BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037872
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08I43|ERI1_SCHPO 3'-5' exonuclease eri1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=eri1 PE=1 SV=1
Length = 313
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 45 FLAKEFSRCSMNIPDNW---RFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSA 101
FLAK+F M IPD W F+D +++ + +T++ + E++G+ EGS
Sbjct: 210 FLAKQFKYDKMPIPD-WIKGPFVDIRSFYKDVYR-----VPRTNINGMLEHWGLQFEGSE 263
Query: 102 HRAMSDVNSLASILERITSD 121
HR + D +L+ I++++ S+
Sbjct: 264 HRGIDDARNLSRIVKKMCSE 283
>sp|Q8CP71|DING_STAES Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=dinG PE=3 SV=1
Length = 902
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>sp|Q5HP88|DING_STAEQ Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=dinG PE=3
SV=1
Length = 902
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>sp|Q49XR1|DING_STAS1 Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=dinG PE=3 SV=1
Length = 900
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
IFVAHN FD+ F+ K F +C +N + +DTL EL K L L E
Sbjct: 86 IFVAHNVA-FDLNFIKKSFKQCHINYRPK-KVMDTL----ELFKVAFPTDKSYQLSELAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
GI L +AHRA D + A ++
Sbjct: 140 AHGIILN-NAHRADEDAATTAQLM 162
>sp|Q9R1A9|TREX2_MOUSE Three prime repair exonuclease 2 OS=Mus musculus GN=Trex2 PE=2 SV=1
Length = 236
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
VAHN +D P L E R ++P + LDTLP R L + + S T Q +
Sbjct: 113 CLVAHNGFDYDFPLLCTELQRLGAHLPQDTVCLDTLPALRGLDRAH---SHGTRAQGRKS 169
Query: 92 YFGIPL--------EGSAHRAMSDVNSL 111
Y L +AH A DV++L
Sbjct: 170 YSLASLFHRYFQAEPSAAHSAEGDVHTL 197
>sp|Q10905|CRN4_CAEEL Cell death-related nuclease 4 OS=Caenorhabditis elegans GN=crn-4
PE=1 SV=1
Length = 298
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 79 SVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILER-ITSDLNFTLSDLLKTS 133
+S+ T++ + EY+ +P G AH AM D ++A+IL+R I T+++LL
Sbjct: 156 ELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTCC 211
>sp|Q89AN3|DPO3E_BUCBP DNA polymerase III subunit epsilon OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=dnaQ PE=3 SV=1
Length = 245
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 34 VAHNARRFDVPFLAKEFSRCSMN---IPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ HNA+ FDV F+ E + + + I D +DTLPLAR+L K SL AL
Sbjct: 95 IIHNAK-FDVGFINYELNMINSDKRKISDYCNVVDTLPLARQLFP-----GKKNSLDALC 148
Query: 91 EYFGIPLEG-SAHRAMSDVNSLASILERITS 120
+ I + H A+ D LA + +TS
Sbjct: 149 NRYKINVSHRDFHSALIDAKLLAKVYTFMTS 179
>sp|Q9BQ50|TREX2_HUMAN Three prime repair exonuclease 2 OS=Homo sapiens GN=TREX2 PE=1 SV=1
Length = 279
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P + LDTLP R L + +
Sbjct: 147 FLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSH 203
Query: 80 VSSKTSLQA------LREYFGIPLEGSAHRAMSDVNSL 111
+ Q YF +AH A DV++L
Sbjct: 204 GTRARGRQGYSLGSLFHRYFRAE-PSAAHSAEGDVHTL 240
>sp|Q91XB0|TREX1_MOUSE Three prime repair exonuclease 1 OS=Mus musculus GN=Trex1 PE=1 SV=2
Length = 314
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
+ VAHN R+D P L E +R S P + F A + ++Q S S S ++
Sbjct: 117 QPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKS 176
Query: 89 -------LREYFGIPLEGSAHRAMSDVNSLASILE 116
R Y+ P + +H A DV +L SI +
Sbjct: 177 YSLGSIYTRLYWQAPTD--SHTAEGDVLTLLSICQ 209
>sp|P55156|MTP_BOVIN Microsomal triglyceride transfer protein large subunit (Fragment)
OS=Bos taurus GN=MTTP PE=1 SV=1
Length = 887
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 9 RMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMN 56
R+ + IP+++KY + G G I+ A +R+DVPF+ E + +MN
Sbjct: 474 RLPEGIPLLLKYTET--GEGPISHLAATTLQRYDVPFITDEVKK-TMN 518
>sp|P43745|DPO3E_HAEIN DNA polymerase III subunit epsilon OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dnaQ PE=3
SV=1
Length = 256
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLD 65
P +++ + Y+N A + HNA FDV F+ EF + ++N+ D D
Sbjct: 76 PEFKEVAQDFLDYING-------AELLIHNAP-FDVGFMDYEFRKLNLNVKTDDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ + +L AL + GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>sp|Q9CPE0|DPO3E_PASMU DNA polymerase III subunit epsilon OS=Pasteurella multocida (strain
Pm70) GN=dnaQ PE=3 SV=1
Length = 253
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDN--WRFLDTLPLARELMKQNGSVSSKTSLQA 88
A + HNA FDV F+ EF + ++NI + DTL +AR++ + SL A
Sbjct: 95 AELLIHNAP-FDVGFMDYEFKKLNLNINTDAICMVTDTLQMARQMYP-----GKRNSLDA 148
Query: 89 LREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
L + GI + + H A+ D LA + +T
Sbjct: 149 LCDRLGIDNSKRTLHGALLDAEILADVYLTMTG 181
>sp|Q08880|DPO3E_BUCAP DNA polymerase III subunit epsilon OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=dnaQ PE=3 SV=2
Length = 233
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 21/102 (20%)
Query: 8 PRMEDLIPIVIKYV-NSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRF--- 63
P +D+ Y+ NS L + HNA FDV F+ +EFS + I D F
Sbjct: 76 PSFKDIAKDFFNYIKNSEL--------IIHNAS-FDVGFINQEFSMLTKKIQDISNFCNI 126
Query: 64 LDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAM 105
+DTL +AR+L K +L AL + I ++HR +
Sbjct: 127 IDTLKIARKLFP-----GKKNTLDALCMRYKIK---NSHRVL 160
>sp|Q5UR48|YR569_MIMIV Uncharacterized exonuclease R569 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R569 PE=4 SV=1
Length = 321
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 34 VAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKT----SLQAL 89
+AHN FD + F + +N P F+DTL + M+ N + K Q
Sbjct: 239 LAHNGNSFDNKIML--FYKL-LN-PQQVFFIDTLSVIPVHMESNSKLDKKNLSAIYYQLF 294
Query: 90 REYFGIPLEGSAHRAMSDVNSLASILERI 118
+E F AHRAM+DV++L I++ +
Sbjct: 295 KEKF------QAHRAMNDVDALIKIMKYL 317
>sp|B7N362|KBAZ_ECO81 D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Escherichia
coli O81 (strain ED1a) GN=kbaZ PE=3 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 45 FLAKEFSR----CSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFG------ 94
++A F + CSM+ D D +PL +++ + + +K + + RE+FG
Sbjct: 116 YVAAGFKKIHLDCSMSCQD-----DPIPLTDDIVAERAARLAKVAEETCREHFGEADLEY 170
Query: 95 -----IPLEGSAHRAMSDV 108
+P+ G AH +S++
Sbjct: 171 VIGTEVPVPGGAHETLSEL 189
>sp|B7LH67|KBAZ_ECO55 D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Escherichia
coli (strain 55989 / EAEC) GN=kbaZ PE=3 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 45 FLAKEFSR----CSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFG------ 94
++A F + CSM+ D D +PL +++ + + +K + + RE+FG
Sbjct: 116 YVAAGFKKIHLDCSMSCQD-----DPIPLTDDIVAERAARLAKVAEETCREHFGEADLEY 170
Query: 95 -----IPLEGSAHRAMSDV 108
+P+ G AH +S++
Sbjct: 171 VIGTEVPVPGGAHETLSEL 189
>sp|Q83JH9|KBAZ_SHIFL D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Shigella
flexneri GN=kbaZ PE=3 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 45 FLAKEFSR----CSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFG------ 94
++A F + CSM+ D D +PL +++ + + +K + + RE+FG
Sbjct: 116 YVAAGFKKIHLDCSMSCQD-----DPIPLTDDIVAERAARLAKVAEETCREHFGEADLEY 170
Query: 95 -----IPLEGSAHRAMSDV 108
+P+ G AH +S++
Sbjct: 171 VIGTEVPVPGGAHETLSEL 189
>sp|B7NKK3|KBAZ_ECO7I D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Escherichia
coli O7:K1 (strain IAI39 / ExPEC) GN=kbaZ PE=3 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 45 FLAKEFSR----CSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFG------ 94
++A F + CSM+ D D +PL +++ + + +K + + RE+FG
Sbjct: 116 YVAAGFKKIHLDCSMSCQD-----DPIPLTDDIVAERAARLAKVAEETCREHFGAADLEY 170
Query: 95 -----IPLEGSAHRAMSDV 108
+P+ G AH +S++
Sbjct: 171 VIGTEVPVPGGAHETLSEL 189
>sp|Q1R6K7|KBAZ_ECOUT D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Escherichia
coli (strain UTI89 / UPEC) GN=kbaZ PE=3 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 45 FLAKEFSR----CSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFG------ 94
++A F + CSM+ D D +PL +++ + + +K + + RE+FG
Sbjct: 116 YVAAGFKKIHLDCSMSCQD-----DPIPLTDDIVAERAARLAKVAEETCREHFGEADLEY 170
Query: 95 -----IPLEGSAHRAMSDV 108
+P+ G AH +S++
Sbjct: 171 VIGTEVPVPGGAHETLSEL 189
>sp|Q0TCX5|KBAZ_ECOL5 D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Escherichia
coli O6:K15:H31 (strain 536 / UPEC) GN=kbaZ PE=3 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 45 FLAKEFSR----CSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFG------ 94
++A F + CSM+ D D +PL +++ + + +K + + RE+FG
Sbjct: 116 YVAAGFKKIHLDCSMSCQD-----DPIPLTDDIVAERAARLAKVAEETCREHFGEADLEY 170
Query: 95 -----IPLEGSAHRAMSDV 108
+P+ G AH +S++
Sbjct: 171 VIGTEVPVPGGAHETLSEL 189
>sp|A1AG39|KBAZ_ECOK1 D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Escherichia
coli O1:K1 / APEC GN=kbaZ PE=3 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 45 FLAKEFSR----CSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFG------ 94
++A F + CSM+ D D +PL +++ + + +K + + RE+FG
Sbjct: 116 YVAAGFKKIHLDCSMSCQD-----DPIPLTDDIVAERAARLAKVAEETCREHFGEADLEY 170
Query: 95 -----IPLEGSAHRAMSDV 108
+P+ G AH +S++
Sbjct: 171 VIGTEVPVPGGAHETLSEL 189
>sp|B7MB55|KBAZ_ECO45 D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Escherichia
coli O45:K1 (strain S88 / ExPEC) GN=kbaZ PE=3 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 45 FLAKEFSR----CSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFG------ 94
++A F + CSM+ D D +PL +++ + + +K + + RE+FG
Sbjct: 116 YVAAGFKKIHLDCSMSCQD-----DPIPLTDDIVAERAARLAKVAEETCREHFGEADLEY 170
Query: 95 -----IPLEGSAHRAMSDV 108
+P+ G AH +S++
Sbjct: 171 VIGTEVPVPGGAHETLSEL 189
>sp|B1LFN5|KBAZ_ECOSM D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Escherichia
coli (strain SMS-3-5 / SECEC) GN=kbaZ PE=3 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 45 FLAKEFSR----CSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFG------ 94
++A F + CSM+ D D +PL +++ + + +K + + RE+FG
Sbjct: 116 YVAAGFKKIHLDCSMSCQD-----DPIPLTDDIVAERAARLAKVAEETCREHFGAADLEY 170
Query: 95 -----IPLEGSAHRAMSDV 108
+P+ G AH +S++
Sbjct: 171 VIGTEVPVPGGAHETLSEL 189
>sp|B7M038|KBAZ_ECO8A D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Escherichia
coli O8 (strain IAI1) GN=kbaZ PE=3 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 45 FLAKEFSR----CSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFG------ 94
++A F + CSM+ D D +PL +++ + + +K + + RE+FG
Sbjct: 116 YVAAGFKKIHLDCSMSCQD-----DPIPLTDDIVAERAARLAKVAEETCREHFGEADLEY 170
Query: 95 -----IPLEGSAHRAMSDV 108
+P+ G AH +S++
Sbjct: 171 VIGTEVPVPGGAHETLSEL 189
>sp|B7NDB8|KBAZ_ECOLU D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Escherichia
coli O17:K52:H18 (strain UMN026 / ExPEC) GN=kbaZ PE=3
SV=1
Length = 426
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 20/79 (25%)
Query: 45 FLAKEFSR----CSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFG------ 94
++A F + CSM+ D D +PL +++ + + +K + + RE+FG
Sbjct: 116 YVAAGFKKIHLDCSMSCQD-----DPVPLTDDIVAERAARLAKVAEETCREHFGEADLVY 170
Query: 95 -----IPLEGSAHRAMSDV 108
+P+ G AH +S++
Sbjct: 171 VIGTEVPVPGGAHETLSEL 189
>sp|B7LMV1|KBAZ_ESCF3 D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=kbaZ PE=3 SV=1
Length = 426
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 16/67 (23%)
Query: 53 CSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFG-----------IPLEGSA 101
CSM+ D D +PL +++ + + +K + + RE+FG +P+ G A
Sbjct: 128 CSMSCQD-----DPVPLTDDIVAERAARLAKVAEETCREHFGEADLVYVIGTEVPVPGGA 182
Query: 102 HRAMSDV 108
H +S++
Sbjct: 183 HETLSEL 189
>sp|P70587|LRRC7_RAT Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus
GN=Lrrc7 PE=1 SV=2
Length = 1490
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 60 NWRFLDTLPLARELMKQNGSVSSKTSLQ----ALREYFGIPLEGSAHRAMSDVNSLASIL 115
N R+ D P +E+ Q GS +K Q + R Y S R +S ++A++L
Sbjct: 1169 NGRYEDEHPSYQEVKAQAGSFPAKNLTQRRPLSARSYSTESYGASQTRPVSARPTMAALL 1228
Query: 116 ERITSDLNF 124
E+I SD N
Sbjct: 1229 EKIPSDYNL 1237
>sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7
PE=1 SV=2
Length = 1490
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 60 NWRFLDTLPLARELMKQNGSVSSKTSLQ----ALREYFGIPLEGSAHRAMSDVNSLASIL 115
N R+ D P +E+ Q GS +K Q + R Y S R +S ++A++L
Sbjct: 1169 NGRYEDEHPSYQEVKAQAGSFPAKNLTQRRPLSARSYSTESYGASQTRPVSARPTMAALL 1228
Query: 116 ERITSDLNF 124
E+I SD N
Sbjct: 1229 EKIPSDYNL 1237
>sp|P75080|DPO3_MYCPN DNA polymerase III PolC-type OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=polC PE=1 SV=1
Length = 1443
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN FD+PFL +F + ++ P +DTL L+ L S + L+
Sbjct: 488 VMVAHNGLSFDLPFLQTQFEKYNI-APLTNPLIDTLALSWALNPGFASHTLSNICAKLKF 546
Query: 92 YFGIPLEGSAHRAMSDVNSLASILE 116
F + HRA D +L + +
Sbjct: 547 DFD---DERLHRADYDTQALKKVFD 568
>sp|Q7Z3K3|POGZ_HUMAN Pogo transposable element with ZNF domain OS=Homo sapiens GN=POGZ
PE=1 SV=2
Length = 1410
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 38 ARRFDVPFLAKEFS--RCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGI 95
A+ + P +A F C+ + +N RF++ + EL +QNG V T Q F
Sbjct: 482 AQLTNFPKVATSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDGHTICQHCYRQFST 541
Query: 96 PLEGSAH 102
P + H
Sbjct: 542 PFQLQCH 548
>sp|Q8BZH4|POGZ_MOUSE Pogo transposable element with ZNF domain OS=Mus musculus GN=Pogz
PE=1 SV=2
Length = 1409
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 44 PFLAKEFS--RCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSA 101
P +A F C+ + +N RF++ + EL +QNG V T Q F P +
Sbjct: 485 PKVATSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQC 544
Query: 102 H 102
H
Sbjct: 545 H 545
>sp|Q9F3X8|RPOB_PORCN DNA-directed RNA polymerase subunit beta OS=Porphyromonas
cangingivalis GN=rpoB PE=3 SV=1
Length = 1270
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 1 MVNRSYVPRMEDLIPIVIKY----VNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMN 56
+V + +P MED P+ + V SR+ G+I + +RR DV F F S++
Sbjct: 1064 IVRQEDMPFMEDGTPMDLCLNPLGVPSRMNLGQIFELSSMGSRRLDVKFATPIFDGASLD 1123
Query: 57 IPDNW 61
D W
Sbjct: 1124 DLDQW 1128
>sp|Q5V1F7|RFCL_HALMA Replication factor C large subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcL PE=3 SV=1
Length = 508
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSD 121
+P+ R+L +Q G +LQ L E L G A+ D+ ++A ER+T+D
Sbjct: 164 VPVLRDLCRQEGVEYESDALQELAEQNSGGLRG----AVKDLQAIAETTERLTAD 214
>sp|B9KB95|LEU1_THENN 2-isopropylmalate synthase OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=leuA PE=3 SV=1
Length = 513
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 2 VNRSYVPRME--DLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFL------AKEFSRC 53
++R Y RME +++ V KYV ++ F A +A R +VPFL A E
Sbjct: 106 IHRKYKLRMEKEEILERVRKYVTYARQFFDLVEFSAEDASRTEVPFLIEVYRTAIESGAT 165
Query: 54 SMNIPD 59
++N+PD
Sbjct: 166 TINVPD 171
>sp|P47277|DPO3_MYCGE DNA polymerase III PolC-type OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=polC PE=3 SV=1
Length = 1451
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN FD+PFL +F + ++ P +DTL L+ L S + L+
Sbjct: 496 VMVAHNGINFDLPFLQTQFEKYNIK-PLTNPLIDTLCLSWALNPLFSSHTLSNICSKLKL 554
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
F + HRA D +L +
Sbjct: 555 EFD---DERLHRAEYDTEALKKVF 575
>sp|Q7V0F1|CLPP2_PROMP ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4)
GN=clpP2 PE=3 SV=1
Length = 201
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 78 GSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFR 135
G+ + +L R PL G++ R SD+ A + RI LN ++SD+ SF
Sbjct: 110 GTKGKRVALPHSRIMIHQPLGGTSQRQASDIEIEAREILRIKDMLNHSMSDMTGQSFE 167
>sp|A8IW34|PURA_CHLRE Adenylosuccinate synthetase, chloroplastic OS=Chlamydomonas
reinhardtii GN=PURA PE=3 SV=1
Length = 463
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 4 RSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNA 38
++YV R+EDLI I +K++ +GPG A+ V A
Sbjct: 428 QAYVQRIEDLIGIPVKWIG--VGPGRDALVVKPEA 460
>sp|Q9J589|RAP94_FOWPN RNA polymerase-associated transcription-specificity factor RAP94
OS=Fowlpox virus (strain NVSL) GN=RAP94 PE=2 SV=1
Length = 798
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 74 MKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSD 128
++QN + K SL A+ Y G E + H D NS + +R+T D+N+ + D
Sbjct: 62 IEQNIDIDDK-SLVAIFSYIGYNFEKNIH----DDNSSIDLGDRMTGDMNYNMYD 111
>sp|Q84UU9|TPS06_ARATH Terpenoid synthase 6 OS=Arabidopsis thaliana GN=TPS06 PE=2 SV=2
Length = 611
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 101 AHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANFD 139
+ + +V SL +ER SD L D LK FR FD
Sbjct: 368 VYGTIDEVKSLVQAIERWDSDAVDVLPDYLKVVFRTTFD 406
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,314,567
Number of Sequences: 539616
Number of extensions: 1752330
Number of successful extensions: 5007
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 4995
Number of HSP's gapped (non-prelim): 42
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)