Query 037872
Match_columns 146
No_of_seqs 123 out of 1054
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:20:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w0h_A 3'-5' exonuclease ERI1; 99.9 2.6E-22 8.8E-27 147.1 11.0 117 1-123 78-196 (204)
2 2gui_A DNA polymerase III epsi 99.9 1.9E-22 6.4E-27 147.0 8.8 108 1-123 75-186 (194)
3 2p1j_A POLIII, DNA polymerase 99.9 3.7E-22 1.3E-26 144.8 7.3 106 1-123 72-177 (186)
4 1zbh_A 3'-5' exonuclease ERI1; 99.8 1E-20 3.5E-25 146.6 10.9 125 1-131 146-273 (299)
5 3mxm_B Three prime repair exon 99.8 3.6E-21 1.2E-25 145.2 7.8 113 6-122 94-215 (242)
6 2f96_A Ribonuclease T; RNAse, 99.8 1.6E-20 5.6E-25 139.7 11.2 113 1-123 97-214 (224)
7 1y97_A Three prime repair exon 99.8 2.1E-20 7.1E-25 140.0 10.7 113 6-122 91-210 (238)
8 3u3y_B Three prime repair exon 99.8 1E-20 3.4E-25 147.3 7.1 112 6-122 94-215 (314)
9 1zbu_A ERI-1 homolog, 3'-5' ex 99.8 3.2E-20 1.1E-24 146.6 10.0 125 1-131 196-323 (349)
10 3v9w_A Ribonuclease T; DEDD nu 99.8 5.8E-20 2E-24 137.6 9.6 113 1-123 105-222 (235)
11 2xri_A ERI1 exoribonuclease 3; 99.8 1.5E-19 5.1E-24 134.7 6.8 110 1-123 97-215 (224)
12 3cg7_A CRN-4, cell death-relat 99.8 4.9E-20 1.7E-24 143.4 3.4 127 1-131 88-219 (308)
13 1wlj_A Interferon stimulated g 99.7 1.8E-18 6.2E-23 125.7 3.7 101 1-123 63-170 (189)
14 2qxf_A Exodeoxyribonuclease I; 99.7 1.7E-17 5.7E-22 135.9 9.1 110 6-122 76-201 (482)
15 3tr8_A Oligoribonuclease; tran 99.7 1.5E-17 5.2E-22 120.9 4.9 100 1-121 78-180 (186)
16 2igi_A Oligoribonuclease; RNAs 99.7 2E-17 6.9E-22 118.9 4.1 101 1-122 74-177 (180)
17 2gbz_A Oligoribonuclease; ORN, 99.6 4.6E-16 1.6E-20 113.4 4.1 102 1-123 78-182 (194)
18 2kfn_A Klenow fragment of DNA 98.8 7.7E-09 2.6E-13 86.8 7.1 102 6-123 71-194 (605)
19 1noy_A Protein (DNA polymerase 98.5 5.4E-07 1.9E-11 71.8 9.3 103 8-118 189-335 (388)
20 1qht_A Protein (DNA polymerase 98.5 1.3E-06 4.6E-11 75.1 12.0 104 7-119 184-327 (775)
21 3iay_A DNA polymerase delta ca 98.3 3.4E-06 1.2E-10 73.8 9.8 102 8-118 311-465 (919)
22 4gmj_B CCR4-NOT transcription 98.2 4E-06 1.4E-10 64.3 7.9 87 29-123 149-246 (285)
23 3k59_A POL II, DNA polymerase 98.2 1E-05 3.6E-10 69.7 11.2 103 8-118 202-349 (786)
24 1x9m_A DNA polymerase; DNA plo 98.2 1.3E-06 4.3E-11 74.5 4.9 103 10-123 39-184 (698)
25 2gv9_A DNA polymerase; polymer 98.1 1.3E-05 4.4E-10 71.8 10.3 102 8-118 399-550 (1193)
26 3d45_A Poly(A)-specific ribonu 98.1 9.9E-06 3.4E-10 66.7 8.0 86 30-123 276-393 (507)
27 2d5r_A CCR4-NOT transcription 98.0 2.4E-05 8.1E-10 59.0 7.8 85 30-122 140-235 (252)
28 3qex_A DNA polymerase, GP43; d 98.0 2.9E-05 1E-09 67.7 9.4 103 8-117 192-337 (903)
29 1uoc_A POP2; hydrolase, DEDD n 97.9 6.8E-05 2.3E-09 57.5 9.2 92 29-122 154-265 (289)
30 1s5j_A DNA polymerase I; repli 97.9 5.2E-05 1.8E-09 65.9 8.7 101 8-115 255-386 (847)
31 2a1r_A Poly(A)-specific ribonu 97.8 8E-05 2.7E-09 60.1 9.0 88 30-123 281-398 (430)
32 4hec_A Putative uncharacterize 97.8 1.9E-05 6.5E-10 57.1 4.9 96 8-122 86-182 (190)
33 2p51_A SPCC18.06C protein; DED 97.8 7.3E-05 2.5E-09 58.3 8.0 85 30-122 161-256 (333)
34 4dfk_A DNA polymerase I, therm 97.7 9.1E-06 3.1E-10 67.4 1.9 84 12-122 45-128 (540)
35 1vk0_A Hypothetical protein; h 97.4 0.0004 1.4E-08 50.7 6.7 94 13-120 96-205 (206)
36 3pv8_A DNA polymerase I; DNA p 97.3 0.00021 7.2E-09 59.8 4.8 96 12-123 68-182 (592)
37 1yt3_A Ribonuclease D, RNAse D 97.1 0.0023 7.7E-08 50.5 8.4 93 14-123 63-171 (375)
38 3saf_A Exosome component 10; e 96.9 0.0023 8E-08 51.5 7.2 94 12-123 169-278 (428)
39 2e6m_A Werner syndrome ATP-dep 96.8 0.0023 8E-08 46.1 5.8 93 14-123 85-196 (208)
40 2hbj_A Exosome complex exonucl 96.8 0.0032 1.1E-07 50.3 7.1 93 13-123 147-255 (410)
41 2py5_A DNA polymerase; protein 96.6 0.0017 5.9E-08 54.1 4.6 90 14-121 44-183 (575)
42 3cym_A Uncharacterized protein 94.9 0.027 9.2E-07 45.4 4.6 89 14-123 84-188 (440)
43 3ikm_A DNA polymerase subunit 93.9 0.0098 3.4E-07 52.6 -0.1 36 29-69 193-228 (1172)
44 1bgx_T TAQ DNA polymerase; DNA 80.9 4.9 0.00017 34.9 7.4 82 15-123 340-421 (832)
45 2zqe_A MUTS2 protein; alpha/be 38.9 40 0.0014 20.2 3.7 41 9-52 13-53 (83)
46 3zy2_A Putative GDP-fucose pro 33.4 1.1E+02 0.0038 23.8 6.1 45 8-56 262-306 (362)
47 2a6p_A Possible phosphoglycera 25.1 44 0.0015 23.2 2.5 34 5-38 119-154 (208)
48 1v37_A Phosphoglycerate mutase 23.1 76 0.0026 21.3 3.3 31 5-38 105-135 (177)
49 3d4i_A STS-2 protein; PGM, 2H- 21.2 95 0.0032 22.3 3.7 33 6-38 168-204 (273)
No 1
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.88 E-value=2.6e-22 Score=147.11 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=97.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHH-HHHHHHHHcCCCCCCC-cceeecHHHHHHHHhhCC
Q 037872 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVP-FLAKEFSRCSMNIPDN-WRFLDTLPLARELMKQNG 78 (146)
Q Consensus 1 mv~~~~ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~-~L~~~~~~~~~~~~~~-~~~iDt~~l~~~~~~~~~ 78 (146)
||+ ++|+|.+|+.+|.+|+.+.....+..++||||+ +||++ ||++++.+++++.|.. ..++||+.+++.+++.
T Consensus 78 ~l~--~~~~~~~v~~~~~~~l~~~~~~~~~~~lv~hn~-~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~-- 152 (204)
T 1w0h_A 78 QVD--RADTFPQVLKKVIDWMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKV-- 152 (204)
T ss_dssp HHH--TSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESS-TTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTC--
T ss_pred HHh--CCCCHHHHHHHHHHHHHhcCCCCCCcEEEEEEC-cchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCC--
Confidence 355 789999999999999987421122347999999 99997 9999999999887642 2799999999988863
Q ss_pred CCCCCCcHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhhhh
Q 037872 79 SVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 79 ~~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
+..+++|.+++++||++.++.+|+|++||.+|++||.++++++.
T Consensus 153 -~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 196 (204)
T 1w0h_A 153 -PRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGC 196 (204)
T ss_dssp -CGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -CCccchHHHHHHHcCCCCCCCccCcHHHHHHHHHHHHHHHHCCC
Confidence 12468999999999999986689999999999999999998764
No 2
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.87 E-value=1.9e-22 Score=146.97 Aligned_cols=108 Identities=29% Similarity=0.449 Sum_probs=93.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCC-C--cceeecHHHHHHHHhhC
Q 037872 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPD-N--WRFLDTLPLARELMKQN 77 (146)
Q Consensus 1 mv~~~~ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~-~--~~~iDt~~l~~~~~~~~ 77 (146)
||+ ++|+|.+|+.+|.+|+++ .++||||+ +||+++|.+++.++|++.|. . +.++||+.+++.++|.
T Consensus 75 ~l~--~~~~~~~v~~~~~~~l~~-------~~lv~hn~-~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~- 143 (194)
T 2gui_A 75 FLL--DKPTFAEVADEFMDYIRG-------AELVIHNA-AFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPG- 143 (194)
T ss_dssp HHT--TSCCHHHHHHHHHHHHTT-------SEEEETTH-HHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTT-
T ss_pred HHh--CCCCHHHHHHHHHHHHCC-------CeEEEEch-HHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCC-
Confidence 456 899999999999999975 58999999 99999999999999988662 2 4799999999998863
Q ss_pred CCCCCCCcHHHHHHHhCCCCCC-CCCchHHHHHHHHHHHHHHHhhhh
Q 037872 78 GSVSSKTSLQALREYFGIPLEG-SAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 78 ~~~~~~~~L~~l~~~~gi~~~~-~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
..++|.+++++||++.++ .+|+|++||.+|++||.++.++..
T Consensus 144 ----~~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 186 (194)
T 2gui_A 144 ----KRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 (194)
T ss_dssp ----SCCSHHHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHTC---
T ss_pred ----CCCCHHHHHHHcCcCCCCCCCCChHHHHHHHHHHHHHHHhccc
Confidence 357999999999999875 489999999999999999987654
No 3
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.86 E-value=3.7e-22 Score=144.85 Aligned_cols=106 Identities=27% Similarity=0.414 Sum_probs=93.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHHHHHHHHhhCCCC
Q 037872 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSV 80 (146)
Q Consensus 1 mv~~~~ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~l~~~~~~~~~~~ 80 (146)
||+ ++|+|.+|+++|.+|+++ .++||||+ +||++||++++.++|++.+. ..++||+.+++.++ .
T Consensus 72 ~l~--~~~~~~~v~~~~~~~l~~-------~~lv~hn~-~fD~~~L~~~~~~~g~~~~~-~~~iDt~~l~~~~~-~---- 135 (186)
T 2p1j_A 72 MLE--NKRSIEEVLPEFLGFLED-------SIIVAHNA-NFDYRFLRLWIKKVMGLDWE-RPYIDTLALAKSLL-K---- 135 (186)
T ss_dssp HHT--TCCBHHHHHHHHHHHSSS-------CEEEETTH-HHHHHHHHHHHHHHHCCCCC-CCEEEHHHHHHHHT-C----
T ss_pred HHh--cCCCHHHHHHHHHHHHCC-------CEEEEECc-HHHHHHHHHHHHHcCCCCCC-CCEEeHHHHHHHHh-h----
Confidence 356 789999999999999975 69999999 99999999999999988654 48999999999887 2
Q ss_pred CCCCcHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhhhh
Q 037872 81 SSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 81 ~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
.++++|.+++++||++.++ +|+|++||.+|++||.++....+
T Consensus 136 ~~~~~L~~l~~~~gi~~~~-~H~Al~Da~~t~~l~~~l~~~~~ 177 (186)
T 2p1j_A 136 LRSYSLDSVVEKLGLGPFR-HHRALDDARVTAQVFLRFVEMMK 177 (186)
T ss_dssp CSCCSHHHHHHHTTCCSTT-CCHHHHHHHHHHHHHHHHTTCC-
T ss_pred cCCCCHHHHHHHcCCCCCC-CcCHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999885 99999999999999999987643
No 4
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=146.63 Aligned_cols=125 Identities=15% Similarity=0.254 Sum_probs=100.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHH-HHHHHHHHcCCCCCC-CcceeecHHHHHHHHhhCC
Q 037872 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVP-FLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNG 78 (146)
Q Consensus 1 mv~~~~ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~-~L~~~~~~~~~~~~~-~~~~iDt~~l~~~~~~~~~ 78 (146)
||+ ++|+|.+|+.+|.+|+.+...+.+..++||||+ .||+. ||.+++.++|++.|. .+.++||+.+++.+++.
T Consensus 146 ~v~--~ap~~~evl~~f~~~l~~~~~~~~~~~lVahn~-~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~-- 220 (299)
T 1zbh_A 146 QVD--RADTFPQVLKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKV-- 220 (299)
T ss_dssp HHH--TSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTC--
T ss_pred HHh--cCCCHHHHHHHHHHHHhhcccCCCCcEEEEEeC-HHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCC--
Confidence 456 789999999999999987421112259999999 99999 999999999988763 23799999988877632
Q ss_pred CCCCCCcHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhhhh-cCHHHHHH
Q 037872 79 SVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN-FTLSDLLK 131 (146)
Q Consensus 79 ~~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~-~~~~~l~~ 131 (146)
..+.++|.+++++||++.++.+|+|++||.+|++||.+++.+.. ..+++++.
T Consensus 221 -~~~~~~L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~~~~~~~~~~l~~ 273 (299)
T 1zbh_A 221 -PRSQTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRMLQDGCELRINEKMH 273 (299)
T ss_dssp -CGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEE
T ss_pred -CCCCccHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHHhCCcCChhhhhh
Confidence 11348999999999999986689999999999999999998765 45555544
No 5
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.84 E-value=3.6e-21 Score=145.16 Aligned_cols=113 Identities=23% Similarity=0.324 Sum_probs=90.8
Q ss_pred CC--CCHH-HHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCC-CCcceeecHHHHHHHHhhCC---
Q 037872 6 YV--PRME-DLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNG--- 78 (146)
Q Consensus 6 ~a--p~f~-ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~-~~~~~iDt~~l~~~~~~~~~--- 78 (146)
++ |+|. +|+++|.+|+++.. ++.++||||+.+||++||++++.++|++++ ..+.++||+.+++.+++...
T Consensus 94 ~~g~p~~~~ev~~~~~~fl~~~~---~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~ 170 (242)
T 3mxm_B 94 VQGRQRFDDNLAILLRAFLQRQP---QPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSG 170 (242)
T ss_dssp HTTCCCSCHHHHHHHHHHHHTSC---SSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC--
T ss_pred hcCCCchhHHHHHHHHHHHhcCC---CCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccc
Confidence 55 8997 99999999998621 126999999328999999999999998865 33478999999998763210
Q ss_pred -CCCCCCcHHHHHHH-hCCCCCCCCCchHHHHHHHHHHHHHHHhhh
Q 037872 79 -SVSSKTSLQALREY-FGIPLEGSAHRAMSDVNSLASILERITSDL 122 (146)
Q Consensus 79 -~~~~~~~L~~l~~~-~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 122 (146)
...++++|++++++ ||++.++ +|+|++||.+|++||.++.+..
T Consensus 171 ~~~~~~~~L~~l~~~~~gi~~~~-~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 171 NGSRKSYSLGSIYTRLYWQAPTD-SHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp ----CCCSHHHHHHHHHSSCCSS-TTSHHHHHHHHHHHHTSSHHHH
T ss_pred cCCCCCcCHHHHHHHHhCCCCCC-CcChHHHHHHHHHHHHHHHHHH
Confidence 12478999999966 9999884 9999999999999999877654
No 6
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.84 E-value=1.6e-20 Score=139.70 Aligned_cols=113 Identities=23% Similarity=0.296 Sum_probs=93.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccC--CCCCcEEEEeCCCCCCHHHHHHHHHHcCCCC-CC-CcceeecHHHHHHHHhh
Q 037872 1 MVNRSYVPRMEDLIPIVIKYVNSRLG--PGEIAIFVAHNARRFDVPFLAKEFSRCSMNI-PD-NWRFLDTLPLARELMKQ 76 (146)
Q Consensus 1 mv~~~~ap~f~ev~~~~~~~l~~~~~--~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~-~~-~~~~iDt~~l~~~~~~~ 76 (146)
||+ ++|++.+++.+|.+|+..... ..+..++||||+ +||++||.+++.++|++. |. .+.++||+.+++.+++
T Consensus 97 ~v~--~~~~~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~-~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~- 172 (224)
T 2f96_A 97 PLR--MAVQEEAALTEIFRGIRKALKANGCKRAILVGHNS-SFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG- 172 (224)
T ss_dssp TTC--CCBCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTH-HHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS-
T ss_pred HHh--cCCCHHHHHHHHHHHHHHHhhhcccCCCEEEEeCh-hhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC-
Confidence 577 899999999999999962100 001369999999 999999999999999874 32 2478999999998874
Q ss_pred CCCCCCCCcHHHHHHHhCCCCCC-CCCchHHHHHHHHHHHHHHHhhhh
Q 037872 77 NGSVSSKTSLQALREYFGIPLEG-SAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 77 ~~~~~~~~~L~~l~~~~gi~~~~-~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
.++|.+++++||++.++ .+|+|++||.+|++||.++++.+.
T Consensus 173 ------~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 173 ------QTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp ------CCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999753 599999999999999999988754
No 7
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.83 E-value=2.1e-20 Score=140.04 Aligned_cols=113 Identities=27% Similarity=0.384 Sum_probs=89.8
Q ss_pred CCCCHH-HHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHHHHHHHHhhCC-----C
Q 037872 6 YVPRME-DLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNG-----S 79 (146)
Q Consensus 6 ~ap~f~-ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~l~~~~~~~~~-----~ 79 (146)
++|+|. ++++.|.+|+++.. ++.++||||+.+||++||.+++.++|++++..+.++||+.+++.++...- .
T Consensus 91 ~~p~f~~~v~~~l~~fl~~~~---~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p 167 (238)
T 1y97_A 91 RKAGFDGAVVRTLQAFLSRQA---GPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRAR 167 (238)
T ss_dssp TCCCSCHHHHHHHHHHHTTSC---SSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC-------
T ss_pred CCCccHHHHHHHHHHHHHhCC---CCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCC
Confidence 789995 99999999998531 23799999975799999999999999887644579999999999873100 0
Q ss_pred CCCCCcHHHHHH-HhCCCCCCCCCchHHHHHHHHHHHHHHHhhh
Q 037872 80 VSSKTSLQALRE-YFGIPLEGSAHRAMSDVNSLASILERITSDL 122 (146)
Q Consensus 80 ~~~~~~L~~l~~-~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 122 (146)
+.++++|.++++ +||++.++ +|+|++||.+|++||.++.+.+
T Consensus 168 ~~~~~~L~~l~~~~~gi~~~~-~H~Al~Da~~ta~l~~~l~~~~ 210 (238)
T 1y97_A 168 GRQGYSLGSLFHRYFRAEPSA-AHSAEGDVHTLLLIFLHRAAEL 210 (238)
T ss_dssp ---CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCHHHHHHHHhCCCCcc-CccHHHHHHHHHHHHHHHHHHH
Confidence 247899999999 69999884 9999999999999999987654
No 8
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.82 E-value=1e-20 Score=147.32 Aligned_cols=112 Identities=23% Similarity=0.331 Sum_probs=90.4
Q ss_pred CC--CCH-HHHHHHHHHHHhcccCCCCCcEEEEeC-CCCCCHHHHHHHHHHcCCCCC-CCcceeecHHHHHHHHhh----
Q 037872 6 YV--PRM-EDLIPIVIKYVNSRLGPGEIAIFVAHN-ARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQ---- 76 (146)
Q Consensus 6 ~a--p~f-~ev~~~~~~~l~~~~~~~~~~~lVahN-~~~FD~~~L~~~~~~~~~~~~-~~~~~iDt~~l~~~~~~~---- 76 (146)
++ |+| .|++++|.+|+++.. +..++|||| + +||++||++++.++|+.++ ..+.++||+.+.+.+.+.
T Consensus 94 ~aG~P~f~~ev~~~l~~fL~~~~---~~~vLVAHNga-~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~ 169 (314)
T 3u3y_B 94 VQGRQRFDDNLAILLRAFLQRQP---QPCCLVAHNGD-RYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (314)
T ss_dssp HTTCCBSCHHHHHHHHHHHHTSC---SSEEEEETTTT-TTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC---
T ss_pred hCCCCCcHHHHHHHHHHHHhcCC---CCcEEEEeCcH-HHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCcc
Confidence 56 899 699999999998621 236999999 8 9999999999999998875 334689999876644432
Q ss_pred CCCCCCCCcHHHHHHH-hCCCCCCCCCchHHHHHHHHHHHHHHHhhh
Q 037872 77 NGSVSSKTSLQALREY-FGIPLEGSAHRAMSDVNSLASILERITSDL 122 (146)
Q Consensus 77 ~~~~~~~~~L~~l~~~-~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 122 (146)
.....++++|++++++ ||++.+ .+|+|++||.+|++||+++.+++
T Consensus 170 ~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 170 GNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp ----CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHHHH
T ss_pred ccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 1011478999999998 999988 59999999999999999887664
No 9
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=146.61 Aligned_cols=125 Identities=16% Similarity=0.267 Sum_probs=100.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHH-HHHHHHHHcCCCCCC-CcceeecHHHHHHHHhhCC
Q 037872 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVP-FLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNG 78 (146)
Q Consensus 1 mv~~~~ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~-~L~~~~~~~~~~~~~-~~~~iDt~~l~~~~~~~~~ 78 (146)
||. ++|+|.+|+.+|.+|+.+...+.+..++||||+ .||++ ||.+++.+++++.|. .+.++||+.+++.+++.
T Consensus 196 ~v~--~ap~~~eVl~~f~~~l~~~~~~~~~~~lVaHNa-~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~-- 270 (349)
T 1zbu_A 196 QVD--RADTFPQVLKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKV-- 270 (349)
T ss_dssp HHH--TSEEHHHHHHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTC--
T ss_pred HHh--CCCCHHHHHHHHHHHHhcccccCCCcEEEEECc-HhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcC--
Confidence 456 789999999999999987321112259999999 99999 999999999988763 23789999988877631
Q ss_pred CCCCCCcHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhhhh-cCHHHHHH
Q 037872 79 SVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN-FTLSDLLK 131 (146)
Q Consensus 79 ~~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~-~~~~~l~~ 131 (146)
..+.++|.+++++||++.++.+|+|++||.+|++||.+++.... ..+++++.
T Consensus 271 -~~~~~~L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~ll~~~~~~~i~ell~ 323 (349)
T 1zbu_A 271 -PRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMH 323 (349)
T ss_dssp -CGGGGSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEE
T ss_pred -CCCCCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHh
Confidence 11348999999999999986689999999999999999998765 45555554
No 10
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.81 E-value=5.8e-20 Score=137.56 Aligned_cols=113 Identities=24% Similarity=0.258 Sum_probs=93.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCC--CCCcEEEEeCCCCCCHHHHHHHHHHcCCCCC-C-CcceeecHHHHHHHHhh
Q 037872 1 MVNRSYVPRMEDLIPIVIKYVNSRLGP--GEIAIFVAHNARRFDVPFLAKEFSRCSMNIP-D-NWRFLDTLPLARELMKQ 76 (146)
Q Consensus 1 mv~~~~ap~f~ev~~~~~~~l~~~~~~--~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~-~-~~~~iDt~~l~~~~~~~ 76 (146)
||. ++|++.+++.+|.+|+.+.... .++.++||||+ .||++||++++.++|++.+ . .+.++||+.+++.+++
T Consensus 105 ~v~--~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~-~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p- 180 (235)
T 3v9w_A 105 PDR--GAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNA-NFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG- 180 (235)
T ss_dssp GGG--CCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTT-HHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS-
T ss_pred HHh--cCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeCh-HHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC-
Confidence 456 7899999999999999631100 02479999999 9999999999999998652 1 1368999999999874
Q ss_pred CCCCCCCCcHHHHHHHhCCCCCC-CCCchHHHHHHHHHHHHHHHhhhh
Q 037872 77 NGSVSSKTSLQALREYFGIPLEG-SAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 77 ~~~~~~~~~L~~l~~~~gi~~~~-~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
.++|.+++++||++.++ .+|+|++||.+|++||.++.+++.
T Consensus 181 ------~~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 181 ------QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp ------CCSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999863 699999999999999999988764
No 11
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.78 E-value=1.5e-19 Score=134.68 Aligned_cols=110 Identities=15% Similarity=0.237 Sum_probs=87.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCCCcEEEEeCCC-------CCCHHH-HHHHHHHcCCCCCCC-cceeecHHHHH
Q 037872 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNAR-------RFDVPF-LAKEFSRCSMNIPDN-WRFLDTLPLAR 71 (146)
Q Consensus 1 mv~~~~ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~-------~FD~~~-L~~~~~~~~~~~~~~-~~~iDt~~l~~ 71 (146)
||+ ++|+|.+|+++|.+|+++ .++||||+. +||++| |.+++.++|++.|.. ..++|+....+
T Consensus 97 ~v~--~a~~~~~v~~~f~~~l~~-------~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~ 167 (224)
T 2xri_A 97 MVD--GQPSLQQVLERVDEWMAK-------EGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYS 167 (224)
T ss_dssp HHT--TCCCHHHHHHHHHHHHHH-------TTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHH
T ss_pred HHc--CCCCHHHHHHHHHHHHhh-------cccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHH
Confidence 466 899999999999999987 467888863 699996 778999999887632 37899544333
Q ss_pred HHHhhCCCCCCCCcHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhhhh
Q 037872 72 ELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 72 ~~~~~~~~~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
..... .++++|.+++++||++.++.+|+|++||.+|++||.+++++..
T Consensus 168 ~~~~~----~p~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~ 215 (224)
T 2xri_A 168 FAMGC----WPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGF 215 (224)
T ss_dssp HHHTS----CCTTTHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhcc----CCCCCHHHHHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHcCC
Confidence 22211 2458999999999999876689999999999999999987643
No 12
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.78 E-value=4.9e-20 Score=143.39 Aligned_cols=127 Identities=20% Similarity=0.336 Sum_probs=96.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCH-HHHHHHHHHcCCCCCCC-cceeecHHHHHHHHhhCC
Q 037872 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDV-PFLAKEFSRCSMNIPDN-WRFLDTLPLARELMKQNG 78 (146)
Q Consensus 1 mv~~~~ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~-~~L~~~~~~~~~~~~~~-~~~iDt~~l~~~~~~~~~ 78 (146)
||. ++|+|.+|+.+|.+|+.+...-+...++|+| + +||+ .||.+++.++|++.|.. ..|+||+.+++.+++...
T Consensus 88 ~v~--~ap~~~evl~~f~~~l~~~~lvahn~~lv~~-g-~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~ 163 (308)
T 3cg7_A 88 SID--TADTFDVVYEQFQQWLITLGLEEGKFAFVCD-S-RQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMG 163 (308)
T ss_dssp HHH--TSCBHHHHHHHHHHHHHHHCCCTTSEEEEES-S-SHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHC
T ss_pred HHh--cCCCHHHHHHHHHHHHHhCCcCCcceEEecc-C-cccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhcccc
Confidence 456 7999999999999999874211112233333 3 6999 79999999999887632 368999999999887531
Q ss_pred C--CCCCCcHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhhhh-cCHHHHHH
Q 037872 79 S--VSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN-FTLSDLLK 131 (146)
Q Consensus 79 ~--~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~-~~~~~l~~ 131 (146)
. ..++++|.+++++||++.++.+|+|++||.+|++||.+++.... .++++++.
T Consensus 164 ~~~~~~~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~~~~~i~~~~~ 219 (308)
T 3cg7_A 164 PKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLT 219 (308)
T ss_dssp CCCCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEE
T ss_pred ccccccCcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCCChHHHHh
Confidence 0 11268999999999999987569999999999999999987654 45554443
No 13
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.72 E-value=1.8e-18 Score=125.68 Aligned_cols=101 Identities=13% Similarity=0.183 Sum_probs=80.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHHHHH--H--HHhh
Q 037872 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAR--E--LMKQ 76 (146)
Q Consensus 1 mv~~~~ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~l~~--~--~~~~ 76 (146)
||+ ++|+|.+|+++|.+|+.+ .++||||+ .||++||+.. .|. ..++||+.++. + .+|
T Consensus 63 ~l~--~a~~~~~v~~~~~~~l~~-------~~lV~hn~-~fD~~~L~~~-------~~~-~~~idt~~~~~~~~~~~~p- 123 (189)
T 1wlj_A 63 HMV--GATPFAVARLEILQLLKG-------KLVVGHDL-KHDFQALKED-------MSG-YTIYDTSTDRLLWREAKLD- 123 (189)
T ss_dssp HHT--TCEEHHHHHHHHHHHHTT-------SEEEESSH-HHHHHHTTCC-------CTT-CEEEEGGGCHHHHHHHTC--
T ss_pred HHc--CCCCHHHHHHHHHHHHCC-------CEEEECCc-HHHHHHHHHh-------CCC-CceechHhhhhhhhcccCC-
Confidence 456 799999999999999975 69999999 8999999743 232 37899988743 2 122
Q ss_pred CCCCCCCCcHHHHHHH-hCCCCCCC--CCchHHHHHHHHHHHHHHHhhhh
Q 037872 77 NGSVSSKTSLQALREY-FGIPLEGS--AHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 77 ~~~~~~~~~L~~l~~~-~gi~~~~~--~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
+.++++|.+++++ ||++..+. +|+|++||.+|++||.++.+.+.
T Consensus 124 ---~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 124 ---HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRA 170 (189)
T ss_dssp -------CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 2368999999998 79998743 99999999999999999987764
No 14
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.72 E-value=1.7e-17 Score=135.86 Aligned_cols=110 Identities=17% Similarity=0.116 Sum_probs=87.5
Q ss_pred CCCCH-HHHHHHHHHHHhcccCCCCCcEEEEeC-CCCCCHHHHHHHHHHcCCCCCC-C----cceeecHHHHHHHHhhCC
Q 037872 6 YVPRM-EDLIPIVIKYVNSRLGPGEIAIFVAHN-ARRFDVPFLAKEFSRCSMNIPD-N----WRFLDTLPLARELMKQNG 78 (146)
Q Consensus 6 ~ap~f-~ev~~~~~~~l~~~~~~~~~~~lVahN-~~~FD~~~L~~~~~~~~~~~~~-~----~~~iDt~~l~~~~~~~~~ 78 (146)
++|.+ .+|+.+|.+|+.. ++.++|||| + +||++||++++.+++++... . ...+||+.+++.+++...
T Consensus 76 ~ap~~~~evl~~f~~~l~~-----~~~~lVaHNs~-~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~ 149 (482)
T 2qxf_A 76 AKGENEAAFAARIHSLFTV-----PKTCILGYNNV-RFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRP 149 (482)
T ss_dssp HHCBCHHHHHHHHHHHHTS-----TTEEEEESSTT-TTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCC
T ss_pred cCCCCHHHHHHHHHHHHcC-----CCCEEEEECCH-HHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCc
Confidence 45655 9999999999972 137999999 8 89999999999999876322 1 257999999998875210
Q ss_pred ---------CCCCCCcHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhhh
Q 037872 79 ---------SVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122 (146)
Q Consensus 79 ---------~~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 122 (146)
.+.++++|.++++++|++.++ +|+|++||.+|++||..+.+..
T Consensus 150 ~~~~wP~~~~~~~s~kL~~L~~~~Gi~~~~-aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 150 EGINWPENDDGLPSFRLEHLTKANGIEHSN-AHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp TTSCCCBCTTSSBCCCHHHHHHHTTCCCC----CTTHHHHHHHHHHHHHHHHS
T ss_pred ccccCcccccCCCCCCHHHHHHHcCCCCCC-CCCHHHHHHHHHHHHHHHHHhC
Confidence 134689999999999999874 9999999999999999998764
No 15
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.69 E-value=1.5e-17 Score=120.85 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=80.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceee--cHH-HHHHHHhhC
Q 037872 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLD--TLP-LARELMKQN 77 (146)
Q Consensus 1 mv~~~~ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iD--t~~-l~~~~~~~~ 77 (146)
||+ ++|++.+|+++|++|+++... .++.++||||+ +||++||++++.+++..++ .+.+| |+. ++|+++|..
T Consensus 78 ~l~--~~p~~~ev~~~~l~fl~~~~~-~~~~~lvghn~-~FD~~FL~~~~~~~~~~~~--~~~iDvsTl~elar~~~P~~ 151 (186)
T 3tr8_A 78 VKN--SSVDEVEAETLTLAFLEKYVS-AGKSPLCGNSV-CQDRRFLSRYMPRLNQFFH--YRHLDVTTLKILAQRWAPQI 151 (186)
T ss_dssp HHT--CCCCHHHHHHHHHHHHTTTSC-TTCSCEEESST-HHHHHHHHHHCHHHHHHSC--SCEEEHHHHHHHHHHHCHHH
T ss_pred HHh--cCCCHHHHHHHHHHHHHHhcc-CCCcEEEEEcH-HHhHHHHHHHHHHcCCCCC--CcEEeHHHHHHHHHHHCccc
Confidence 466 899999999999999953211 12479999999 9999999999998875433 47899 998 999999842
Q ss_pred CCCCCCCcHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhh
Q 037872 78 GSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSD 121 (146)
Q Consensus 78 ~~~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~ 121 (146)
. -|++.. .+|+|++||.+|..++....+.
T Consensus 152 ----~----------~~~~~~-~~HrAl~Da~ati~~l~~y~~~ 180 (186)
T 3tr8_A 152 ----A----------AAHIKE-SQHLALQDIRDSIEELRYYRAH 180 (186)
T ss_dssp ----H----------TTSCCC-CCSCHHHHHHHHHHHHHHHHHH
T ss_pred ----c----------ccCCCC-CCcChHHHHHHHHHHHHHHHHH
Confidence 1 177777 4999999999999998887664
No 16
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.67 E-value=2e-17 Score=118.93 Aligned_cols=101 Identities=19% Similarity=0.252 Sum_probs=79.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceee--cH-HHHHHHHhhC
Q 037872 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLD--TL-PLARELMKQN 77 (146)
Q Consensus 1 mv~~~~ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iD--t~-~l~~~~~~~~ 77 (146)
||+ ++|+|.+|+++|.+|+++.. +++..++||||+ +||++||++++.+++..++ .+++| |+ .+++.++|..
T Consensus 74 ~l~--~~~~~~~v~~~~~~~l~~~~-~~~~~~lv~hn~-~fD~~fL~~~~~~~~~~~~--~~~~d~~tl~~l~~~~~p~~ 147 (180)
T 2igi_A 74 VKA--STMGDREAELATLEFLKQWV-PAGKSPICGNSI-GQDRRFLFKYMPELEAYFH--YRYLDVSTLKELARRWKPEI 147 (180)
T ss_dssp HHH--CCCCHHHHHHHHHHHHTTTS-CTTTSCEEESSH-HHHHHHHHHHCHHHHHHSC--SCEEETHHHHHHHHHHCGGG
T ss_pred HHh--cCCCHHHHHHHHHHHHHHhC-CCCCceEEecCH-HHHHHHHHHHHHHhccCCC--cceeeHHHHHHHHHHhChHh
Confidence 455 79999999999999998521 112369999999 9999999999988764332 46899 88 4888876521
Q ss_pred CCCCCCCcHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhhh
Q 037872 78 GSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122 (146)
Q Consensus 78 ~~~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 122 (146)
..|++.. .+|+|++||.+|++||..+.+.+
T Consensus 148 --------------~~~i~~~-~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 148 --------------LDGFTKQ-GTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp --------------GGGSCCC-CCCCHHHHHHHHHHHHHHHHHHT
T ss_pred --------------hhCCCCc-CCcCcHHHHHHHHHHHHHHHHHh
Confidence 1377666 49999999999999999988764
No 17
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.59 E-value=4.6e-16 Score=113.39 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=76.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHH---HHHHHHhhC
Q 037872 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLP---LARELMKQN 77 (146)
Q Consensus 1 mv~~~~ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~---l~~~~~~~~ 77 (146)
||+ ++|+|.+|+++|.+|++++. +.+..++||||+ +||++||++++.+++..++ ++.+|+.. +++.+.|.
T Consensus 78 ~l~--~~p~~~ev~~~~~~~l~~~~-~~~~~~lvghn~-~FD~~fL~~~~~~~~~~~~--~~~~d~~~l~~l~~~~~p~- 150 (194)
T 2gbz_A 78 VLD--SQVTHAQAEAQTVAFLGEWI-RAGASPMCGNSI-CQDRRFLHRQMSRLERYFH--YRNLDVSTIKELARRWAPA- 150 (194)
T ss_dssp HHH--CCCCHHHHHHHHHHHHTTTC-CTTSSCEEESSH-HHHHHHHHHHCHHHHHHSC--SCEEEHHHHHHHHHHHCGG-
T ss_pred HHh--cCCCHHHHHHHHHHHHHHhC-CCCCceEEecCH-HHhHHHHHHHHHHhcccCC--CccccHHHHHHHHHHhCHH-
Confidence 355 79999999999999998641 112335999999 9999999999988763322 46789764 45554431
Q ss_pred CCCCCCCcHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhhhh
Q 037872 78 GSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 78 ~~~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
+++ +++.. .+|+|++||.+|+++|..+.+.+.
T Consensus 151 -----------~~~--~i~~~-~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 151 -----------VAS--GFAKS-SAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp -----------GGT--TCCCC-SCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred -----------HHh--CCCCC-CCcccHHHHHHHHHHHHHHHHHhc
Confidence 222 46666 499999999999999999988764
No 18
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.80 E-value=7.7e-09 Score=86.76 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHHHHHHHHhhCCCCCCCCc
Q 037872 6 YVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTS 85 (146)
Q Consensus 6 ~ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~~~~ 85 (146)
+++++.++++.|.+|+.+ +..++|+||+ .||+.+|.+ +|+..+. .++||+.+++.+.|. ..+++
T Consensus 71 ~~l~~~~vl~~L~~~L~d-----~~i~kV~hna-k~D~~~L~~----~Gi~l~~--~~~DT~laayLL~p~----~~~~~ 134 (605)
T 2kfn_A 71 DQISRERALELLKPLLED-----EKALKVGQNL-KYDRGILAN----YGIELRG--IAFDTMLESYILNSV----AGRHD 134 (605)
T ss_dssp CCCCHHHHHHHHHHHHTC-----TTSCEEESSH-HHHHHHHHT----TTCCCCC--EEEEHHHHHHHHCTT----SSCCS
T ss_pred cccCHHHHHHHHHHHHcC-----CCCeEEEECc-HHHHHHHHH----CCCCCCC--ccccHHHHHHHhCCC----CCCCC
Confidence 456789999999999986 2358999999 899999974 5776542 589999999888763 35799
Q ss_pred HHHHHHHh-CCCCC--------C-------------CCCchHHHHHHHHHHHHHHHhhhh
Q 037872 86 LQALREYF-GIPLE--------G-------------SAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 86 L~~l~~~~-gi~~~--------~-------------~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
|+++++.| |++.. | ..|+|..||.+|++|+..+.+.+.
T Consensus 135 L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~ 194 (605)
T 2kfn_A 135 MDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQ 194 (605)
T ss_dssp HHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCcccHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 87531 1 126799999999999999987654
No 19
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=98.50 E-value=5.4e-07 Score=71.76 Aligned_cols=103 Identities=21% Similarity=0.225 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHH-cCCC-------CC-------------------CC
Q 037872 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSR-CSMN-------IP-------------------DN 60 (146)
Q Consensus 8 p~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~-~~~~-------~~-------------------~~ 60 (146)
++-.+.+..|++++... .+.+++|||+.+||+++|.+.+.. +|+. +. ..
T Consensus 189 ~~E~~LL~~f~~~i~~~----dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~G 264 (388)
T 1noy_A 189 DNERDMLMEYINLWEQK----RPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDG 264 (388)
T ss_dssp SCHHHHHHHHHHHHHHS----CCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETT
T ss_pred CCHHHHHHHHHHHHHHh----CCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEcC
Confidence 34568999999999765 357999999999999999888776 5520 01 00
Q ss_pred cceeecHHHHHHH-HhhCCCCCCCCcHHHHHH-HhCCCCCCC---------------CCchHHHHHHHHHHHHHH
Q 037872 61 WRFLDTLPLAREL-MKQNGSVSSKTSLQALRE-YFGIPLEGS---------------AHRAMSDVNSLASILERI 118 (146)
Q Consensus 61 ~~~iDt~~l~~~~-~~~~~~~~~~~~L~~l~~-~~gi~~~~~---------------~H~Al~Da~~ta~l~~~l 118 (146)
...+|++.+.+.+ +. +..+++|+++++ .+|.....- ...++.||..|.+|+.++
T Consensus 265 R~~lD~~~~~k~~~~~----~l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 265 VSILDYLDLYKKFAFT----NLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp SEECCHHHHHHHHTCC----CCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeEHHHHHhhcCcC----cccCCCHHHHHHHHhCCCCCCcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1278999999885 32 157999999998 567654320 123688999999999884
No 20
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.49 E-value=1.3e-06 Score=75.11 Aligned_cols=104 Identities=20% Similarity=0.329 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCC---------------------Ccceee
Q 037872 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPD---------------------NWRFLD 65 (146)
Q Consensus 7 ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~---------------------~~~~iD 65 (146)
.++..+.+..|.+++... .+.++||||+.+||+++|...+..+|++... ....+|
T Consensus 184 ~~~E~~LL~~f~~~i~~~----dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lD 259 (775)
T 1qht_A 184 VSTEKEMIKRFLRVVREK----DPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFD 259 (775)
T ss_dssp CSCHHHHHHHHHHHHHHH----CCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEE
T ss_pred cCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEE
Confidence 357788999999999876 2469999999999999999999988876431 124689
Q ss_pred cHHHHHHHHhhCCCCCCCCcHHHHHH-HhCCCCCCC------------------CCchHHHHHHHHHHHHHHH
Q 037872 66 TLPLARELMKQNGSVSSKTSLQALRE-YFGIPLEGS------------------AHRAMSDVNSLASILERIT 119 (146)
Q Consensus 66 t~~l~~~~~~~~~~~~~~~~L~~l~~-~~gi~~~~~------------------~H~Al~Da~~ta~l~~~l~ 119 (146)
++.+.+..+ ...+++|+++++ .+|.....- ....+.||..|..|+.+++
T Consensus 260 l~~~~k~~~-----~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 260 LYPVIRRTI-----NLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp HHHHHHHHS-----CCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----CcCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999988864 257899999997 588865420 2345789999999987654
No 21
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.4e-06 Score=73.81 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCC--------C-------------------
Q 037872 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPD--------N------------------- 60 (146)
Q Consensus 8 p~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~--------~------------------- 60 (146)
++..+.+..|++|+... .+.+++|||+.+||+++|.+.+..+|++... .
T Consensus 311 ~sE~eLL~~F~~~i~~~----DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~ 386 (919)
T 3iay_A 311 ATEEEMLSNWRNFIIKV----DPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETK 386 (919)
T ss_dssp SSHHHHHHHHHHHHHHH----CCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEEC
T ss_pred CCHHHHHHHHHHHHHHh----CCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccc
Confidence 56789999999999876 3579999999999999999999888776210 0
Q ss_pred ------cceeecHHHHHHHHhhCCCCCCCCcHHHHHHH-hCCCCCCC-------------------CCchHHHHHHHHHH
Q 037872 61 ------WRFLDTLPLARELMKQNGSVSSKTSLQALREY-FGIPLEGS-------------------AHRAMSDVNSLASI 114 (146)
Q Consensus 61 ------~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~~-~gi~~~~~-------------------~H~Al~Da~~ta~l 114 (146)
-..+|++.+.+..+ ...+++|++++++ +|....+- ....+.||..|++|
T Consensus 387 ~~~i~GR~~lDl~~~~k~~~-----~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L 461 (919)
T 3iay_A 387 NVNIDGRLQLDLLQFIQREY-----KLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRL 461 (919)
T ss_dssp CBCCTTCEEEEHHHHHHHHC-----CCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEcCeEEEEhHHHHHhhc-----CCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence 03689999888754 3589999999876 46543310 12357899999999
Q ss_pred HHHH
Q 037872 115 LERI 118 (146)
Q Consensus 115 ~~~l 118 (146)
+.++
T Consensus 462 ~~kl 465 (919)
T 3iay_A 462 MEKL 465 (919)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9886
No 22
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.22 E-value=4e-06 Score=64.26 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=67.7
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHHHcCCCCC-----------CCcceeecHHHHHHHHhhCCCCCCCCcHHHHHHHhCCCC
Q 037872 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIP-----------DNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPL 97 (146)
Q Consensus 29 ~~~~lVahN~~~FD~~~L~~~~~~~~~~~~-----------~~~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~~~gi~~ 97 (146)
+...||+|+. .||+.+|-+.+....+|.. ++ .+.|+..+++..- .-..+|+++++.+|++.
T Consensus 149 ~~v~WvtfH~-~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP-~vYD~K~l~~~~~------~l~ggL~~lA~~L~v~r 220 (285)
T 4gmj_B 149 EGVKWLSFHS-GYDFGYLIKILTNSNLPEEELDFFEILRLFFP-VIYDVKYLMKSCK------NLKGGLQEVAEQLELER 220 (285)
T ss_dssp TTCEEEESSC-HHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCS-CEEEHHHHGGGST------TCCSCHHHHHHHTTCCC
T ss_pred CCCceEEecc-hhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCc-hhhhHHHHHHhcc------ccCChHHHHHHhCCCCC
Confidence 3567888888 8999999988764444321 12 5788887765432 13458999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhhh
Q 037872 98 EGSAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 98 ~~~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
-|..|.|-+|++.|+.+|.+|.+.+-
T Consensus 221 ~g~~HqAGsDSllT~~~F~kl~~~~f 246 (285)
T 4gmj_B 221 IGPQHQAGSDSLLTGMAFFKMREMFF 246 (285)
T ss_dssp CSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999988763
No 23
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=98.22 E-value=1e-05 Score=69.69 Aligned_cols=103 Identities=14% Similarity=0.196 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCC-------C-----------------cce
Q 037872 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPD-------N-----------------WRF 63 (146)
Q Consensus 8 p~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~-------~-----------------~~~ 63 (146)
++-.+.+..|.+|+... .+.++||||+.+||+++|...+..+|++... . -..
T Consensus 202 ~~E~~lL~~f~~~i~~~----dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~ 277 (786)
T 3k59_A 202 ASRPQLLEKLNAWFANY----DPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLI 277 (786)
T ss_dssp SSHHHHHHHHHHHHHHH----CCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEE
T ss_pred CCHHHHHHHHHHHHHHc----CCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEE
Confidence 35679999999999886 3469999999999999999998887765310 0 125
Q ss_pred eecHHHHHHHHhhCCCCCCCCcHHHHHHHh-CCCCCC-C-------------------CCchHHHHHHHHHHHHHH
Q 037872 64 LDTLPLARELMKQNGSVSSKTSLQALREYF-GIPLEG-S-------------------AHRAMSDVNSLASILERI 118 (146)
Q Consensus 64 iDt~~l~~~~~~~~~~~~~~~~L~~l~~~~-gi~~~~-~-------------------~H~Al~Da~~ta~l~~~l 118 (146)
+|.+.+.+... ....+++|+++++++ |..... . .+..+.||..|.+||.++
T Consensus 278 lDl~~~lk~~~----~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 278 IDGIEALKSAF----WNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp EEHHHHHHHTT----CCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEhHHHHHhcc----CCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888877531 135899999999885 543321 1 123478999999999884
No 24
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.19 E-value=1.3e-06 Score=74.46 Aligned_cols=103 Identities=26% Similarity=0.348 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHH---cCCCCCCCcceeecHHHHHHHHhhCCCCCCCCcH
Q 037872 10 MEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSR---CSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSL 86 (146)
Q Consensus 10 f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~---~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~~~~L 86 (146)
+.++++.|.+|++ . ..+.|+||+..||+.+|.+.+.+ .|+..+. ..++|||.+++.+.+. ..+++|
T Consensus 39 i~~~l~~L~~~l~-~-----~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~-~~~~DTmlaayLL~p~----~~~~~L 107 (698)
T 1x9m_A 39 FGAYLDALEAEVA-R-----GGLIVFHNGHKYDVPALTKLAKLQLNREFHLPR-ENCIDTLVLSRLIHSN----LKDTDM 107 (698)
T ss_dssp HHHHHHHHHHHHH-T-----TCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCG-GGEEEHHHHHHHHTTT----SCCCTT
T ss_pred HHHHHHHHHHHHh-c-----CCeEEEcCChHHHHHHHHHhhhhcccCCccCCC-CcchhHHHHHHHhCCC----CCCCCH
Confidence 4567888999996 2 36899999636999999887643 3665432 2689999999888763 246677
Q ss_pred HHHHHHh--------CC-------CC----------CC---------------CCCchHHHHHHHHHHHHHHHhhhh
Q 037872 87 QALREYF--------GI-------PL----------EG---------------SAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 87 ~~l~~~~--------gi-------~~----------~~---------------~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
+++++.| |. +. .| ..|+|..||.+|.+|+..+..++.
T Consensus 108 ~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~ 184 (698)
T 1x9m_A 108 GLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKH 184 (698)
T ss_dssp TTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666555 31 10 01 157899999999999999988664
No 25
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=98.13 E-value=1.3e-05 Score=71.80 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHH-HHcCCCCCC---------------------------
Q 037872 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEF-SRCSMNIPD--------------------------- 59 (146)
Q Consensus 8 p~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~-~~~~~~~~~--------------------------- 59 (146)
++-.+.+..|++++...+ +.+|||||+.+||+++|.+.+ ..++++.+.
T Consensus 399 ~sE~eLL~~F~~~I~~~D----PDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~ 474 (1193)
T 2gv9_A 399 DSEFEMLLAFMTLVKQYG----PEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIK 474 (1193)
T ss_dssp SSHHHHHHHHHHHHHHHC----CSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEE
T ss_pred CCHHHHHHHHHHHHHhcC----CCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEE
Confidence 456799999999998763 579999999999999998875 455654330
Q ss_pred --CcceeecHHHHHHHHhhCCCCCCCCcHHHHHHH-hCCCCCCC-------------------CCchHHHHHHHHHHHHH
Q 037872 60 --NWRFLDTLPLARELMKQNGSVSSKTSLQALREY-FGIPLEGS-------------------AHRAMSDVNSLASILER 117 (146)
Q Consensus 60 --~~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~~-~gi~~~~~-------------------~H~Al~Da~~ta~l~~~ 117 (146)
....+|++.+.+..+ ...+++|++++++ +|....+- .+..+.||..|++||.+
T Consensus 475 i~GRv~lDl~~~~~~~~-----kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~k 549 (1193)
T 2gv9_A 475 VNGMVNIDMYGIITDKI-----KLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFK 549 (1193)
T ss_dssp ETTBEEEEHHHHHTTTC-----CCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCeEeehHHHHHHHHh-----ccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 013578888765543 3689999999975 67654320 23457899999999987
Q ss_pred H
Q 037872 118 I 118 (146)
Q Consensus 118 l 118 (146)
+
T Consensus 550 l 550 (1193)
T 2gv9_A 550 F 550 (1193)
T ss_dssp H
T ss_pred H
Confidence 6
No 26
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=98.08 E-value=9.9e-06 Score=66.66 Aligned_cols=86 Identities=24% Similarity=0.257 Sum_probs=63.6
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHcCCCCCCC------------cceeecHHHHHH--HHhhCCCCCCCCcHHHHHHHhCC
Q 037872 30 IAIFVAHNARRFDVPFLAKEFSRCSMNIPDN------------WRFLDTLPLARE--LMKQNGSVSSKTSLQALREYFGI 95 (146)
Q Consensus 30 ~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~------------~~~iDt~~l~~~--~~~~~~~~~~~~~L~~l~~~~gi 95 (146)
..+|||||. -+|+-+|.+.+- + +.|.. -.++||.-++.. +... ..+.+|..+.+.++-
T Consensus 276 ~kpiVgHN~-l~Dl~~l~~~F~--~-pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~----~~~~~L~~l~~~l~~ 347 (507)
T 3d45_A 276 GKLVVGHNM-LLDVMHTIHQFY--C-PLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDI----INNTSLAELEKRLKE 347 (507)
T ss_dssp CCEEEESSC-HHHHHHHHHHHT--C-SCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHH----CCCCCHHHHHHHTTS
T ss_pred CCeEEEech-HHHHHHHHHHhc--C-CCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccc----cCCCCHHHHHHHHhc
Confidence 479999999 899999988774 2 33321 157999887653 2111 247899999999872
Q ss_pred -----CC-------------CCCCCchHHHHHHHHHHHHHHHhhhh
Q 037872 96 -----PL-------------EGSAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 96 -----~~-------------~~~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
+. .+..|.|-.||++|+.+|.+|...+.
T Consensus 348 ~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 348 TPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp TTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 22 23589999999999999999987765
No 27
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=97.98 E-value=2.4e-05 Score=58.95 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=67.0
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHcCCCCC-----------CCcceeecHHHHHHHHhhCCCCCCCCcHHHHHHHhCCCCC
Q 037872 30 IAIFVAHNARRFDVPFLAKEFSRCSMNIP-----------DNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLE 98 (146)
Q Consensus 30 ~~~lVahN~~~FD~~~L~~~~~~~~~~~~-----------~~~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~~~gi~~~ 98 (146)
+..||+++. .||+.+|-+.+.-..+|.. ++ .++||.-+++... + -..+|+.+++.+|++..
T Consensus 140 ~v~Witfhg-~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP-~iyD~K~l~~~~~-----~-l~~gL~~la~~L~v~r~ 211 (252)
T 2d5r_A 140 GVKWLSFHS-GYDFGYLIKILTNSNLPEEELDFFEILRLFFP-VIYDVKYLMKSCK-----N-LKGGLQEVAEQLELERI 211 (252)
T ss_dssp SCEEEESSC-HHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCS-CEEEHHHHGGGCT-----T-CCSSHHHHHHHHTCCCC
T ss_pred CceEEEecC-cchHHHHHHHhcCCCCCCCHHHHHHHHHHHCc-chhhHHHHHHHhc-----c-cCCCHHHHHHHcCCCcc
Confidence 468999999 9999999988764333321 12 5678877766542 1 24679999999999998
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhh
Q 037872 99 GSAHRAMSDVNSLASILERITSDL 122 (146)
Q Consensus 99 ~~~H~Al~Da~~ta~l~~~l~~~~ 122 (146)
|..|.|-+|+..|+.+|.+|.+..
T Consensus 212 g~~HqAGsDsllT~~~F~km~~~~ 235 (252)
T 2d5r_A 212 GPQHQAGSDSLLTGMAFFKMREMF 235 (252)
T ss_dssp SSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred CcccchhhhHHHHHHHHHHHHHHh
Confidence 899999999999999999998765
No 28
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=97.98 E-value=2.9e-05 Score=67.72 Aligned_cols=103 Identities=13% Similarity=0.186 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHH-cCCC-------CCC-------------------C
Q 037872 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSR-CSMN-------IPD-------------------N 60 (146)
Q Consensus 8 p~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~-~~~~-------~~~-------------------~ 60 (146)
++-.+.+..|++|+... .+.+++|||+.+||+++|...+.+ +|++ +.. .
T Consensus 192 ~sE~eLL~~F~~~I~~~----DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~G 267 (903)
T 3qex_A 192 DNEKELLMEYLNFWQQK----TPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFG 267 (903)
T ss_dssp SSHHHHHHHHHHHHHHT----CCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHh----CCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEeC
Confidence 45678999999999865 357999999999999999888876 4642 100 1
Q ss_pred cceeecHHHHHHHHhhCCCCCCCCcHHHHHHHh-CCCCCCC---------------CCchHHHHHHHHHHHHH
Q 037872 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYF-GIPLEGS---------------AHRAMSDVNSLASILER 117 (146)
Q Consensus 61 ~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~~~-gi~~~~~---------------~H~Al~Da~~ta~l~~~ 117 (146)
...+|++.+.+.+.. ....+++|+++++++ |.....- .+..+.||..|.+|+.+
T Consensus 268 Rv~lDl~~~~k~~~~---~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 268 ISVLDYIDLYKKFSF---TNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp CEECCHHHHHHHHSC---CCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeeHHHHHHHhCc---cCcCCCCHHHHHHHHcCCCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 136899999887421 135799999998775 4433320 22447899999999987
No 29
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=97.90 E-value=6.8e-05 Score=57.50 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=68.6
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHHHcCCCCC-----------CCcceeecHHHHHHHHhhCCC---------CCCCCcHHH
Q 037872 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIP-----------DNWRFLDTLPLARELMKQNGS---------VSSKTSLQA 88 (146)
Q Consensus 29 ~~~~lVahN~~~FD~~~L~~~~~~~~~~~~-----------~~~~~iDt~~l~~~~~~~~~~---------~~~~~~L~~ 88 (146)
++..||+++. .||+.+|-+.+....+|.. ++ .+.|+.-+++....-.|. .....+|++
T Consensus 154 ~~v~Witfhg-~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP-~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 231 (289)
T 1uoc_A 154 DSVTWITYHA-AYDLGFLINILMNDSMPNNKEDFEWWVHQYMP-NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTT 231 (289)
T ss_dssp TTSEEEESST-THHHHHHHHHHTTSCCCSSHHHHHHHHHHHCS-SEEEHHHHHHHHTTTCC-------------CCSHHH
T ss_pred CCceEEEccC-cchHHHHHHHhccccCCcCHHHHHHHHHHhCc-cceeHHHHHHHHHhccCcccccccccccccCCCHHH
Confidence 3468999999 9999999887764333321 12 578998887765321110 013468999
Q ss_pred HHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhhh
Q 037872 89 LREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122 (146)
Q Consensus 89 l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 122 (146)
+++.+|++..|..|.|-+|++.|+.+|.+|....
T Consensus 232 lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~ 265 (289)
T 1uoc_A 232 LADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLS 265 (289)
T ss_dssp HHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCccCcccccHHHHHHHHHHHHHHHHHH
Confidence 9999999988889999999999999999998654
No 30
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.85 E-value=5.2e-05 Score=65.88 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCC---CC----------C-cceeecHHHHHH-
Q 037872 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNI---PD----------N-WRFLDTLPLARE- 72 (146)
Q Consensus 8 p~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~---~~----------~-~~~iDt~~l~~~- 72 (146)
++..+.+..|++|+.+. +++||||+.+||+++|...+.++|+.. |. . ...+|.+.+.+.
T Consensus 255 ~~E~~LL~~f~~~i~~~------diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~ 328 (847)
T 1s5j_A 255 NTEYELLGRFFDILLEY------PIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNK 328 (847)
T ss_dssp SSHHHHHHHHHHHHTTC------SEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSH
T ss_pred CCHHHHHHHHHHHhccC------CEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhh
Confidence 56889999999999763 599999999999999999999998852 11 1 135788776532
Q ss_pred H---HhhCCCCCCCCcHHHHHH-HhCCCCCC------------CCCchHHHHHHHHHHH
Q 037872 73 L---MKQNGSVSSKTSLQALRE-YFGIPLEG------------SAHRAMSDVNSLASIL 115 (146)
Q Consensus 73 ~---~~~~~~~~~~~~L~~l~~-~~gi~~~~------------~~H~Al~Da~~ta~l~ 115 (146)
. +.. +....+++|+++++ .+|..... -+...+.||..|..|+
T Consensus 329 ~~~~y~f-~~kl~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 329 AVRNYAF-EGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp HHHHHTS-TTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhcc-ccccccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 1 110 11247899999998 56664331 0234678999999995
No 31
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=97.84 E-value=8e-05 Score=60.10 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=61.9
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHcCCCCCCC------------cceeecHHHHHHHHhhCCCCCCCCcHHHHHHHhCCC-
Q 037872 30 IAIFVAHNARRFDVPFLAKEFSRCSMNIPDN------------WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIP- 96 (146)
Q Consensus 30 ~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~------------~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~~~gi~- 96 (146)
..++||||. =.|+-++.+.|- + +.|.. -.++||.-++... +. +....+.+|..+.+.+.-.
T Consensus 281 ~KpiVGHN~-llDl~~l~~~F~--~-pLP~~~~eFk~~i~~lFP~i~DTK~la~~~-~~-~~~~~~~sL~~l~~~l~~~~ 354 (430)
T 2a1r_A 281 GKLVIGHNM-LLDVMHTVHQFY--C-PLPADLSEFKEMTTCVFPRLLDTKLMASTQ-PF-KDIINNTSLAELEKRLKETP 354 (430)
T ss_dssp CCEEEESSC-HHHHHHHHHHHT--C-CCCSSHHHHHHHHHHHCSSEEEHHHHHTST-TT-TTTCSCCSHHHHHHHTTSTT
T ss_pred CCceEechh-HHHHHHHHHHhc--c-CCCCCHHHHHHHHHHHCCceeehHHhhhcc-ch-hhccCCCCHHHHHHHHHhCC
Confidence 368999999 799998887653 2 33421 2689997776432 11 1113568999999877522
Q ss_pred C-----------------CCCCCchHHHHHHHHHHHHHHHhhhh
Q 037872 97 L-----------------EGSAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 97 ~-----------------~~~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
. .+..|.|-.||++|+.||.+|...+.
T Consensus 355 ~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~ 398 (430)
T 2a1r_A 355 FNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 398 (430)
T ss_dssp CCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 1 13579999999999999999998765
No 32
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=97.84 E-value=1.9e-05 Score=57.09 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHc-CCCCCCCcceeecHHHHHHHHhhCCCCCCCCcH
Q 037872 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRC-SMNIPDNWRFLDTLPLARELMKQNGSVSSKTSL 86 (146)
Q Consensus 8 p~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~-~~~~~~~~~~iDt~~l~~~~~~~~~~~~~~~~L 86 (146)
.++.++..+|.+|+... +++...|+||++ .||..+|.+.+... .++.....-..|...+... .+ ...|
T Consensus 86 ~s~~~i~~~L~~FL~~~--~~~~~eLwa~~~-~yD~~~L~ql~g~m~~lP~~~p~~~~dlr~~~~~----~g----~~~l 154 (190)
T 4hec_A 86 RSRQQIRLDLEEFLRID--GTDSIELWAWVG-AYDHVALCQLWGPMTALPPTVPRFTRELRQLWED----RG----CPRM 154 (190)
T ss_dssp ECHHHHHHHHHHHTTTT--SSCEEEEEESSC-HHHHHHHHTTTSSGGGSCTTSCSSCEEHHHHHHH----TT----CCCC
T ss_pred CCHHHHHHHHHHHHHhc--CCCCCEEEEecc-cccHHHHHHHhcccccCCcccchhhHHHHHHHHH----cC----CCCC
Confidence 47899999999999642 123456999999 89999998765432 1221111112333222211 11 1111
Q ss_pred HHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhhh
Q 037872 87 QALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122 (146)
Q Consensus 87 ~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 122 (146)
. +.++.+|+||.||+..+..|+.+....
T Consensus 155 p--------~~~~~~H~AL~DAR~n~~~~~~~~~~~ 182 (190)
T 4hec_A 155 P--------PRPRDVHDALVDARDQLRRFRLITSTD 182 (190)
T ss_dssp C--------C-----CCHHHHHHHHHHHHHHHHC--
T ss_pred C--------CCCCCCcCcHHHHHHHHHHHHHHhCcc
Confidence 1 223358999999999999999987544
No 33
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=97.81 E-value=7.3e-05 Score=58.25 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=66.6
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHcCCCCC-----------CCcceeecHHHHHHHHhhCCCCCCCCcHHHHHHHhCCCCC
Q 037872 30 IAIFVAHNARRFDVPFLAKEFSRCSMNIP-----------DNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLE 98 (146)
Q Consensus 30 ~~~lVahN~~~FD~~~L~~~~~~~~~~~~-----------~~~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~~~gi~~~ 98 (146)
+..||+++. .||+.+|-+.+....+|.. ++ .++||.-+++... .-..+|..+++.+|++..
T Consensus 161 ~V~Witfhg-~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP-~iYD~K~l~~~~~------~l~ggL~~lA~~L~v~Ri 232 (333)
T 2p51_A 161 EVTWITFHS-GYDFAYLLKAMTQIPLPAEYEEFYKILCIYFP-KNYDIKYIMKSVL------NNSKGLQDIADDLQIHRI 232 (333)
T ss_dssp TCEEEESSC-HHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSS-SEEEHHHHHTTTT------CCCCCHHHHHHHTTCCCC
T ss_pred CceEEEecc-chhHHHHHHHhcCCCCCCCHHHHHHHHHHHCc-chhhHHHHHHHhc------cccCCHHHHHHHcCCCcc
Confidence 468999999 9999999887753333221 11 5678877766542 124689999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhh
Q 037872 99 GSAHRAMSDVNSLASILERITSDL 122 (146)
Q Consensus 99 ~~~H~Al~Da~~ta~l~~~l~~~~ 122 (146)
|..|.|-+|++.|+.+|.+|...+
T Consensus 233 g~~HqAGsDSlLT~~~F~kl~~~~ 256 (333)
T 2p51_A 233 GPQHQAGSDALLTARIFFEIRSRY 256 (333)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHHHHHHHHHh
Confidence 899999999999999999998754
No 34
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=97.72 E-value=9.1e-06 Score=67.37 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHHHHHHHHhhCCCCCCCCcHHHHHH
Q 037872 12 DLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91 (146)
Q Consensus 12 ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~ 91 (146)
++++.|.+|+++ ...|+||+ .||+. ++|+... ..+||+..+..+.| . +++|+++++
T Consensus 45 ~~l~~l~~~l~d-------~~kV~hn~-K~Dl~-------~~Gi~~~---~~fDT~laAyLL~p-----~-~~~L~~La~ 100 (540)
T 4dfk_A 45 EPYKALRDLKEA-------RGLLAKDL-SVLAL-------REGLGLP---PGDDPMLLAYLLDP-----S-NTTPEGVAR 100 (540)
T ss_dssp SHHHHHTTCSSB-------CSTTHHHH-HHHHH-------HTTCCCC---BCCCHHHHHHHHCT-----T-CCCHHHHHH
T ss_pred hhHHHHHHHHcC-------CCEEEecc-HHHHH-------HcCCCCC---cceeHHHHHHHhCC-----C-CCCHHHHHH
Confidence 467888888864 57899999 89998 6677643 57899999988865 2 789999999
Q ss_pred HhCCCCCCCCCchHHHHHHHHHHHHHHHhhh
Q 037872 92 YFGIPLEGSAHRAMSDVNSLASILERITSDL 122 (146)
Q Consensus 92 ~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 122 (146)
.|+... .|+|..||.+|++++..+.+++
T Consensus 101 ~yl~~~---gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 101 RYGGEW---TEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp HHTSCC---CSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhh---ccchHHHHHHHHHHHHHHHHHH
Confidence 887542 4779999999999999998887
No 35
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=97.40 E-value=0.0004 Score=50.66 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHHHHHHHHhhCCCCCCCCcHHHHHH-
Q 037872 13 LIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE- 91 (146)
Q Consensus 13 v~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~- 91 (146)
.+..|.+++.+ +..+.|||++ ++|+..|.+. +|+.. ..++|+..++....... .....+|..+++
T Consensus 96 ~L~~L~~lL~d-----~~i~Kvg~~~-~~D~~~L~~~---~g~~~---~~~~Dl~~la~~~lg~~--~~~~~gL~~Lv~~ 161 (206)
T 1vk0_A 96 NLKDLYRFFAS-----KFVTFVGVQI-EEDLDLLREN---HGLVI---RNAINVGKLAAEARGTL--VLEFLGTRELAHR 161 (206)
T ss_dssp GGHHHHHHHTC-----SSSEEEESSC-HHHHHHHHHH---HCCCC---SSEEEHHHHHHHHHTCG--GGGGCCHHHHHHH
T ss_pred cHHHHHHHhcC-----CCceEEEecc-HHHHHHHHHh---cCCCc---CCeeeHHHHHHHHcCCC--CCCCccHHHHHHH
Confidence 44557888876 4678999999 8999999654 45543 26899988876665320 125789999975
Q ss_pred HhCCCC-C--------------CCCCchHHHHHHHHHHHHHHHh
Q 037872 92 YFGIPL-E--------------GSAHRAMSDVNSLASILERITS 120 (146)
Q Consensus 92 ~~gi~~-~--------------~~~H~Al~Da~~ta~l~~~l~~ 120 (146)
.+|++. + .+-+.|..||+.+..||.++..
T Consensus 162 ~lg~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 162 VLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHCCCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 578877 2 1567899999999999999865
No 36
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=97.31 E-value=0.00021 Score=59.82 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHHHHHHHHhhCCCCCCCCcHHHHHH
Q 037872 12 DLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91 (146)
Q Consensus 12 ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~ 91 (146)
++++.|.+|+++ +....|+||+ .||+.+|. ++|+..+. .++|||-.+..+.|. ..+++|+++++
T Consensus 68 ~~l~~Lk~lLed-----~~i~KV~hn~-K~Dl~vL~----~~Gi~l~g--~~fDTmLAAYLL~p~----~~~~~L~~La~ 131 (592)
T 3pv8_A 68 LADPQFVAWLGD-----ETKKKSMFDS-KRAAVALK----WKGIELCG--VSFDLLLAAYLLDPA----QGVDDVAAAAK 131 (592)
T ss_dssp TTCHHHHHHHTC-----TTSEEEESSH-HHHHHHHH----HTTCCCCC--EEEEHHHHHHHHCGG----GCCCSHHHHHG
T ss_pred hHHHHHHHHHhC-----CCCeEEEech-HHHHHHHH----HcCCCCCC--ccchHHHHHHHcCCC----CCCCCHHHHHH
Confidence 356789999986 3568999999 89999885 46877542 589999998888764 25799999997
Q ss_pred Hh-CCCCC--------C----------CCCchHHHHHHHHHHHHHHHhhhh
Q 037872 92 YF-GIPLE--------G----------SAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 92 ~~-gi~~~--------~----------~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
.| |.+.. | ..+.|..||..|.+++..+.+++.
T Consensus 132 ~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~ 182 (592)
T 3pv8_A 132 MKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELR 182 (592)
T ss_dssp GGTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCchHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 55432 0 135678899999999999987764
No 37
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=97.08 E-value=0.0023 Score=50.47 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=68.7
Q ss_pred HHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHHHHHHHHhhCCCCCCCCcHHHHHHHh
Q 037872 14 IPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYF 93 (146)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~~~ 93 (146)
+..|.+++.+ +..+.|+||+ .+|+..|.+ .+|+... .++||+..+..+-+ ..+++|.++++.|
T Consensus 63 ~~~L~~ll~d-----~~i~Kv~h~~-k~Dl~~L~~---~~Gi~~~---~~fDt~lAa~lL~~-----~~~~~L~~L~~~~ 125 (375)
T 1yt3_A 63 WSPLKAILRD-----PSITKFLHAG-SEDLEVFLN---VFGELPQ---PLIDTQILAAFCGR-----PMSWGFASMVEEY 125 (375)
T ss_dssp CHHHHHHHHC-----TTSEEEESSC-HHHHHHHHH---HHSSCCS---SEEEHHHHHHHTTC-----CTTCCHHHHHHHH
T ss_pred hHHHHHHHcC-----CCceEEEeeH-HHHHHHHHH---HcCCCCC---cEEEcHHHHHHcCC-----CCChhHHHHHHHH
Confidence 4678888876 3457899999 899999964 2466532 57999988766532 2479999999876
Q ss_pred -CCCCCC---------------CCCchHHHHHHHHHHHHHHHhhhh
Q 037872 94 -GIPLEG---------------SAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 94 -gi~~~~---------------~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
|+...- +.+.|..||..+..|+..+..++.
T Consensus 126 l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~ 171 (375)
T 1yt3_A 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 (375)
T ss_dssp HCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765321 124577899999999999987764
No 38
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=96.92 E-value=0.0023 Score=51.50 Aligned_cols=94 Identities=21% Similarity=0.246 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHHHHHHHHhhCCCCCCCCcHHHHHH
Q 037872 12 DLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91 (146)
Q Consensus 12 ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~ 91 (146)
+.+..|.+++.+ ...+-|+||+ .+|+..|.+ .+|+.. ...+||+..+..+- .+.++|..+++
T Consensus 169 ~~l~~L~~lL~d-----p~i~KV~H~~-k~Dl~~L~~---~~Gi~~---~~~fDT~lAa~lL~------~~~~gL~~Lv~ 230 (428)
T 3saf_A 169 SDMYILNESLTD-----PAIVKVFHGA-DSDIEWLQK---DFGLYV---VNMFDTHQAARLLN------LGRHSLDHLLK 230 (428)
T ss_dssp GGGGGGHHHHTC-----TTSEEEESSC-HHHHHHHHH---HHCCCC---SSEEEHHHHHHHTT------CSCCSHHHHHH
T ss_pred hhHHHHHHHHcC-----CCceEEEeeh-HHHHHHHHH---HcCCCc---CceeechhHHHHhC------CCCCCHHHHHH
Confidence 345678888876 3467799999 899998853 456653 25799998876552 23579999986
Q ss_pred -HhCCCCCC---------------CCCchHHHHHHHHHHHHHHHhhhh
Q 037872 92 -YFGIPLEG---------------SAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 92 -~~gi~~~~---------------~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
++|++.+- +.+.|..||..+..|+..+..++.
T Consensus 231 ~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~ 278 (428)
T 3saf_A 231 LYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMW 278 (428)
T ss_dssp HHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45765431 136788999999999999987764
No 39
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=96.80 E-value=0.0023 Score=46.05 Aligned_cols=93 Identities=14% Similarity=0.034 Sum_probs=64.9
Q ss_pred HHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceee-cHHHHHHHHhhCCCCCCCCcHHHHHHH
Q 037872 14 IPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLD-TLPLARELMKQNGSVSSKTSLQALREY 92 (146)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iD-t~~l~~~~~~~~~~~~~~~~L~~l~~~ 92 (146)
.+.+.+++.+ +....||||+ .+|+..|.+. +|+... .++| |+-.+..+-+ ..+++|.++++.
T Consensus 85 ~~~L~~lL~d-----~~i~Kv~~~~-k~D~~~L~~~---~gi~~~---~~fDlt~lAayll~~-----~~~~~L~~L~~~ 147 (208)
T 2e6m_A 85 PQGLKMLLEN-----KSIKKAGVGI-EGDQWKLLRD---FDVKLE---SFVELTDVANEKLKC-----AETWSLNGLVKH 147 (208)
T ss_dssp CHHHHHHHTC-----TTSEEEESSH-HHHHHHHHHH---HCCCCC---SEEEHHHHHHHHTTC-----CCCCCHHHHHHH
T ss_pred hHHHHHHhcC-----CCceEEEEee-HHHHHHHHHH---CCCCCC---CEEEHHHHHHHHccC-----CCChhHHHHHHH
Confidence 3567888876 3467899999 8999988642 566532 4799 5554443322 257899999987
Q ss_pred h-CCCCC----------------C-CCCchHHHHHHHHHHHHHHHhhhh
Q 037872 93 F-GIPLE----------------G-SAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 93 ~-gi~~~----------------~-~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
| |.... . +.+.|..||.++.+++..+.+.+.
T Consensus 148 ~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~ 196 (208)
T 2e6m_A 148 VLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGD 196 (208)
T ss_dssp HHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6 65431 0 234578999999999999988765
No 40
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=96.80 E-value=0.0032 Score=50.35 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHHHHHHHHhhCCCCCCCCcHHHHHHH
Q 037872 13 LIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92 (146)
Q Consensus 13 v~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~~ 92 (146)
.+..|.+++.+ +..+.|+||+ .+|+..|.+. +|+... .++||+..+..+- .+.++|..+++.
T Consensus 147 ~l~~L~~lL~d-----~~i~KV~h~~-k~Dl~~L~~~---~Gi~~~---~~fDt~lAa~LL~------~~~~~L~~L~~~ 208 (410)
T 2hbj_A 147 NLHILNEVFTN-----PSIVKVFHGA-FMDIIWLQRD---LGLYVV---GLFDTYHASKAIG------LPRHSLAYLLEN 208 (410)
T ss_dssp TGGGGHHHHTC-----TTSEEEESSC-HHHHHHHHHH---HCCCCS---SEEEHHHHHHHHT------CSCCSHHHHHHH
T ss_pred hHHHHHHHHcC-----CCceEEEEeh-HHHHHHHHHH---cCCCcC---CEEEcHHHHHHhC------CCccCHHHHHHH
Confidence 34567888876 3467899999 8999999643 466532 4899998776552 236899999987
Q ss_pred h-CCCCCC---------------CCCchHHHHHHHHHHHHHHHhhhh
Q 037872 93 F-GIPLEG---------------SAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 93 ~-gi~~~~---------------~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
| |+...- +...|..||..+..|+..+..++.
T Consensus 209 ~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~ 255 (410)
T 2hbj_A 209 FANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLI 255 (410)
T ss_dssp HSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 654320 124578999999999999988875
No 41
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=96.64 E-value=0.0017 Score=54.12 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=63.6
Q ss_pred HHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcC-------CCCC------CC-------------------c
Q 037872 14 IPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS-------MNIP------DN-------------------W 61 (146)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~-------~~~~------~~-------------------~ 61 (146)
+.+|++|+..+ +.++++||. +||..+|...+...+ ++.. .. .
T Consensus 44 l~~fi~~~~~~-----~~~i~~hNl-~FD~~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i 117 (575)
T 2py5_A 44 LDEFMAWVLKV-----QADLYFHNL-KFAGAFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHT 117 (575)
T ss_dssp HHHHHHHHHHH-----CCEEEETTH-HHHHHHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHc-----CCEEEEECh-hhhHHHHHHHHHHhCcccccccccccccceeccCCeEEEEEEEEecCCCceEEE
Confidence 57788888765 467889999 999999999988875 2111 00 1
Q ss_pred ceeecHHHHHHHHhhCCCCCCCCcHHHHHHHhCCCCCC------------------CCCchHHHHHHHHHHHHHHHhh
Q 037872 62 RFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEG------------------SAHRAMSDVNSLASILERITSD 121 (146)
Q Consensus 62 ~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~~~gi~~~~------------------~~H~Al~Da~~ta~l~~~l~~~ 121 (146)
..+|++.+ -+.+|+.+++.|+++... ..+.++.||..+++++......
T Consensus 118 ~~~Ds~~~------------~~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~f~~ 183 (575)
T 2py5_A 118 VIYDSLKK------------LPFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQFKQ 183 (575)
T ss_dssp EEEEHHHH------------SCSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEhHhh------------hhhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23455544 247999999999987320 1446789999999999876543
No 42
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=94.94 E-value=0.027 Score=45.40 Aligned_cols=89 Identities=26% Similarity=0.329 Sum_probs=63.9
Q ss_pred HHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHHHHHHHHhhCCCCCCCCcHHHHHHHh
Q 037872 14 IPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYF 93 (146)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~~~ 93 (146)
+..|.+++.+ ...|+||+ .+|+..|. .+|+... ..+||+..+..+ . ...++|..+++.|
T Consensus 84 l~~L~~lL~d-------~~KV~h~~-k~Dl~~L~----~~gi~~~---~~fDt~lAa~lL-~-----~~~~gL~~L~~~~ 142 (440)
T 3cym_A 84 WNDFNRAVGD-------AVWILHDS-LQDLPGFD----ELGMEPQ---RLFDTEIAARLL-G-----LKRFGLAAVTEHF 142 (440)
T ss_dssp HHHHHHHHTT-------CEEEESSH-HHHHHHHH----HHTCCCC---EEEEHHHHHHHT-T-----CSSCSHHHHHHHH
T ss_pred HHHHHHHHCC-------CCEEEEcC-HHHHHHHH----HcCCcCC---ceehHHHHHHHh-C-----CCCCCHHHHHHHH
Confidence 4578888865 36899999 89999774 4566532 689997555443 2 1379999999877
Q ss_pred -CCCCC---------------CCCCchHHHHHHHHHHHHHHHhhhh
Q 037872 94 -GIPLE---------------GSAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 94 -gi~~~---------------~~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
|.... .+...|..||..+..|+..+..++.
T Consensus 143 lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~ 188 (440)
T 3cym_A 143 LGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELK 188 (440)
T ss_dssp HCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64321 0134588999999999999987764
No 43
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=93.90 E-value=0.0098 Score=52.64 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=26.6
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHHH
Q 037872 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPL 69 (146)
Q Consensus 29 ~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~l 69 (146)
++.++||||+ +||+..+.. .+.+.... ..++|||.|
T Consensus 193 ~~rlIVGHNV-syDRARI~E---eY~l~~sk-~rFlDTMSL 228 (1172)
T 3ikm_A 193 QEQLVVGHNV-SFDRAHIRE---QYLIQGSR-MRFLDTMSM 228 (1172)
T ss_dssp SCCCCBCBCS-SSSTTGGGT---SSCSSCCC-CCCCBTTHH
T ss_pred CccEEEeCCc-chhHHHHHH---HHhcccCC-ceeeechhh
Confidence 3579999999 999998864 44444333 378999976
No 44
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=80.92 E-value=4.9 Score=34.88 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=58.8
Q ss_pred HHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCCCCCCcceeecHHHHHHHHhhCCCCCCCCcHHHHHHHhC
Q 037872 15 PIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFG 94 (146)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~~~~L~~l~~~~g 94 (146)
+.|..|+++. .+ |+ .||+.+|. ++|+... .+.|||-.+..+.| . .++|+++++.||
T Consensus 340 ~~Lk~lLed~------~i----n~-K~d~~~L~----~~Gi~~~---~~~Dt~laayLl~p-----~-~~~l~~l~~~~g 395 (832)
T 1bgx_T 340 KALRDLKEAR------GL----LA-KDLSVLAL----REGLGLP---PGDDPMLLAYLLDP-----S-NTTPEGVARRYG 395 (832)
T ss_dssp HHHHHCSSBC------BT----TH-HHHHHHHH----HHTCCCC---BCCCHHHHHHHHCT-----T-CCSTTHHHHHHS
T ss_pred HHHHHHHhCC------CC----Ch-HHHHHHHH----HcCCccC---cccCHHHHHHHcCC-----C-CCCHHHHHHHhC
Confidence 4577777652 22 77 78887775 4677653 56899998877754 2 689999999997
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhhhh
Q 037872 95 IPLEGSAHRAMSDVNSLASILERITSDLN 123 (146)
Q Consensus 95 i~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 123 (146)
-... .. .| .||..|.+++..+...+.
T Consensus 396 k~~~-~~-ya-~da~~~~~l~~~l~~~L~ 421 (832)
T 1bgx_T 396 GEWT-EE-AG-ERAALSERLFANLWGRLE 421 (832)
T ss_dssp CCCC-SS-HH-HHHHHHHHHHHHHHHHHT
T ss_pred CCch-HH-HH-HHHHHHHHHHHHHHHHHh
Confidence 4322 12 34 699999999999977664
No 45
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=38.90 E-value=40 Score=20.20 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHH
Q 037872 9 RMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSR 52 (146)
Q Consensus 9 ~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~ 52 (146)
+.+|+..++..|+.++...+-..+.|-|+- .- +.|++....
T Consensus 13 ~~~eA~~~l~~fl~~a~~~g~~~v~IIHGk-G~--GvLr~~V~~ 53 (83)
T 2zqe_A 13 TVAEALLEVDQALEEARALGLSTLRLLHGK-GT--GALRQAIRE 53 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEEEECCS-TT--SHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECC-Cc--hHHHHHHHH
Confidence 578999999999987655556789999985 54 566665543
No 46
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=33.36 E-value=1.1e+02 Score=23.85 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCCHHHHHHHHHHcCCC
Q 037872 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMN 56 (146)
Q Consensus 8 p~f~ev~~~~~~~l~~~~~~~~~~~lVahN~~~FD~~~L~~~~~~~~~~ 56 (146)
|+++++..++.+++.... -+.|+|+.++ .-.+.-|++.+.+.+++
T Consensus 262 PSle~I~rqIk~~vk~~~---lksVFIATDa-~~~~~ELk~~L~~~~v~ 306 (362)
T 3zy2_A 262 PSKQQILEQIVEKVGSIG---AKSVFVASDK-DHMIDEINEALKPYEIE 306 (362)
T ss_dssp CCHHHHHHHHHHHHHHHT---CSEEEEEESS-CCCHHHHHHHHGGGTCC
T ss_pred CCHHHHHHHHHHHHHhcC---CcEEEEecCC-HHHHHHHHHHhhccCce
Confidence 789999999999997532 3689999999 66788998888765543
No 47
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=25.05 E-value=44 Score=23.19 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHhccc--CCCCCcEEEEeCC
Q 037872 5 SYVPRMEDLIPIVIKYVNSRL--GPGEIAIFVAHNA 38 (146)
Q Consensus 5 ~~ap~f~ev~~~~~~~l~~~~--~~~~~~~lVahN~ 38 (146)
|+..++.++...+..++..-. .+++..++|+|+.
T Consensus 119 p~gEs~~~~~~R~~~~l~~l~~~~~~~~vlvVsHg~ 154 (208)
T 2a6p_A 119 PAGESVAQVNDRADSAVALALEHMSSRDVLFVSHGH 154 (208)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHTTTSCEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCcEEEEeCHH
Confidence 345678888777776664321 1335678999986
No 48
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.40A {Thermus thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A 2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A 2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A 2enw_A ...
Probab=23.07 E-value=76 Score=21.32 Aligned_cols=31 Identities=10% Similarity=0.183 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCCCcEEEEeCC
Q 037872 5 SYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNA 38 (146)
Q Consensus 5 ~~ap~f~ev~~~~~~~l~~~~~~~~~~~lVahN~ 38 (146)
|+..++.++...+..++..- . +..++|+|+.
T Consensus 105 p~gEs~~~~~~R~~~~l~~l-~--~~vlvVsHg~ 135 (177)
T 1v37_A 105 PGGESLSAFQERVFRFLEGL-K--APAVLFTHGG 135 (177)
T ss_dssp TTSCCHHHHHHHHHHHHHHC-C--SCEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHc-C--CCEEEEcCHH
Confidence 35568899988888888653 1 4678999985
No 49
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=21.17 E-value=95 Score=22.25 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHhccc--C--CCCCcEEEEeCC
Q 037872 6 YVPRMEDLIPIVIKYVNSRL--G--PGEIAIFVAHNA 38 (146)
Q Consensus 6 ~ap~f~ev~~~~~~~l~~~~--~--~~~~~~lVahN~ 38 (146)
...++.++...+..++..-. . +++..++|+|+.
T Consensus 168 ~gEs~~~~~~R~~~~l~~l~~~~~~~~~~vlvVsHg~ 204 (273)
T 3d4i_A 168 PAESYDQYVERCAVSMGQIINTCPQDMGITLIVSHSS 204 (273)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTSTTCCSEEEEEECTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEechH
Confidence 45678888887777775421 1 235678999996
Done!