BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037875
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 25 DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR 84
+T LH+A + R D A +LL+ + I Q+ G T LHA A S+ A V LLR
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASADAXI-----QDNMGRTPLHA-AVSADAQGVFQILLR 76
Query: 85 KAPGLLGMRNNNGETALFRSAR 106
L R ++G T L +AR
Sbjct: 77 NRATDLDARMHDGTTPLILAAR 98
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 26/194 (13%)
Query: 25 DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR 84
+T LH+A + + A+ L++ PEL MT + G T LH + V L R
Sbjct: 38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97
Query: 85 KAP-------GLLGMRNNN----GETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQ 133
A + R +N GE L +A G +I L AD Q
Sbjct: 98 GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA-------Q 150
Query: 134 RNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKP--EAFKLKQER 191
+ +TVLH+ ++ + A ++ Y L+ D + +L+L+ FKL
Sbjct: 151 DSLGNTVLHILILQPNKTFACQM---YNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE 207
Query: 192 G---FFKKLLHFRK 202
G F+ L+ RK
Sbjct: 208 GNIVMFQHLMQKRK 221
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 25 DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR 84
+T LH+A + R D A +LL+ + I Q+ G T LHA A S+ A V L+R
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANI-----QDNMGRTPLHA-AVSADAQGVFQILIR 79
Query: 85 KAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYD 124
L R ++G T L +AR + L AD +
Sbjct: 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 25 DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR 84
+T LH+A + R D A +LL+ + I Q+ G T LHA A S+ A V L+R
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADANI-----QDNMGRTPLHA-AVSADAQGVFQILIR 112
Query: 85 KAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYD 124
L R ++G T L +AR + L AD +
Sbjct: 113 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 152
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 25 DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR 84
+T LH+A + R D A +LL+ + I Q+ G T LHA A S+ A V L+R
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANI-----QDNMGRTPLHA-AVSADAQGVFQILIR 111
Query: 85 KAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYD 124
L R ++G T L +AR + L AD +
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 151
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 62 GNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIA 121
G T LH A + V KLL +A + ++ NG T L +AR G ++ L A
Sbjct: 2 GRTPLHLAARNGHLEVV--KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 122 DYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK 181
D + K + T LH+A + H E+ +++ E + KD +G T L L +
Sbjct: 60 DVNAKDK-------NGRTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARN 111
Query: 182 P--EAFKLKQERGFF 194
E KL E G +
Sbjct: 112 GHLEVVKLLLEAGAY 126
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 26 TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
T LH+A + R D A +LL+ + I Q+ G T LHA A S+ A V L+R
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANI-----QDNMGRTPLHA-AVSADAQGVFQILIRN 112
Query: 86 APGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYD 124
L R ++G T L +AR + L AD +
Sbjct: 113 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 151
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 62 GNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIA 121
G T LH A + V KLL + ++++G T L +A G ++ L K A
Sbjct: 37 GRTPLHHAAENGHKEVV--KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94
Query: 122 DYDQPSKQPFLQRNDQSTVLHMAVISQHFELA-LEIAKEYKYLIGEKDMDGMTALQLLS- 179
D + + +D T LH A + H E+ L I+K + D DG T L L
Sbjct: 95 DVNA-------KDSDGRTPLHHAAENGHKEVVKLLISKGAD--VNTSDSDGRTPLDLARE 145
Query: 180 -CKPEAFKLKQERGFF 194
E KL +++G +
Sbjct: 146 HGNEEVVKLLEKQGGW 161
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 24 DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL 83
++ VLH+A + +L L+D I + H + + GNT LH A ++ P KLL
Sbjct: 190 EELVLHLAVKVA-NQASLPLVDFIIQNGGH-LDAKAADGNTALHYAALYNQ--PDCLKLL 245
Query: 84 RKAPGLLGMRNNNGETAL 101
K L+G N GETAL
Sbjct: 246 LKGRALVGTVNEAGETAL 263
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 24 DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL 83
++ VLH+A + +L L+D I + H + + GNT LH A ++ P KLL
Sbjct: 171 EELVLHLAVKVA-NQASLPLVDFIIQNGGH-LDAKAADGNTALHYAALYNQ--PDCLKLL 226
Query: 84 RKAPGLLGMRNNNGETAL 101
K L+G N GETAL
Sbjct: 227 LKGRALVGTVNEAGETAL 244
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 14/136 (10%)
Query: 62 GNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIA 121
G T LH A V KLL + ++++G T L +A+ G +I L K A
Sbjct: 37 GRTPLHYAAKEGHKEIV--KLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 94
Query: 122 DYDQPSKQPFLQRNDQSTVLHMAVISQHFELA-LEIAKEYKYLIGEKDMDGMTALQLLS- 179
D + + +D T LH A H E+ L I+K + D DG T L L
Sbjct: 95 DVNA-------KDSDGRTPLHYAAKEGHKEIVKLLISKGAD--VNTSDSDGRTPLDLARE 145
Query: 180 -CKPEAFKLKQERGFF 194
E KL +++G +
Sbjct: 146 HGNEEIVKLLEKQGGW 161
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 55 MTRQNKAGNTVLH---ATATSSR-----ALPVADKLLRKAPGLL------GMRNNNGETA 100
M RQ+ GNTVLH A A ++R + D LL K L + NN+G +
Sbjct: 167 MRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSP 226
Query: 101 LFRSARYGKADIF 113
L +A+ GK IF
Sbjct: 227 LMMAAKTGKIGIF 239
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 55 MTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFN 114
+ ++ +G T LH A L + + LL+ + + G+T L +A YG +I
Sbjct: 40 VNAEDDSGKTPLHLAAIKGH-LEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVE 97
Query: 115 FLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTA 174
L AD + F T LH+A + H E+ +E+ +Y + +D G TA
Sbjct: 98 VLLKNGADVNATDTYGF-------TPLHLAADAGHLEI-VEVLLKYGADVNAQDKFGKTA 149
Query: 175 LQL 177
+
Sbjct: 150 FDI 152
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 55 MTRQNKAGNTVLH---ATATSSR-----ALPVADKLLRKAPGLL------GMRNNNGETA 100
+ RQ+ GNTVLH A A ++R + D LL K L + NN+G +
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP 228
Query: 101 LFRSARYGKADIF-NFLAGKIAD 122
L +A+ GK IF + + +IAD
Sbjct: 229 LMMAAKTGKIGIFQHIIRREIAD 251
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 62 GNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIA 121
G T LH A + V KLL +A + ++ NG T L +AR G ++ L A
Sbjct: 2 GRTPLHLAARNGHLEVV--KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 122 DYDQPSKQPFLQRNDQSTVLHMAVISQHFEL 152
D + K + T LH+A + H E+
Sbjct: 60 DVNAKDK-------NGRTPLHLAARNGHLEV 83
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 136 DQSTVLHMAVISQH---FELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQ 189
D T LH+AVI QH + L + ++YL + D+ G TAL L + EA +++
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEK 63
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 136 DQSTVLHMAVISQH---FELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQ 189
D T LH+AVI QH + L + ++YL + D+ G TAL L + EA +++
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEK 63
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 101 LFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEY 160
L +AR G+ D L AD + ND T LH+A + H E+ +E+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATD-------NDGYTPLHLAASNGHLEI-VEVLLKN 69
Query: 161 KYLIGEKDMDGMTALQLLSC 180
+ D+ G+T L L +
Sbjct: 70 GADVNASDLTGITPLHLAAA 89
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 7 EVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEI--------PELYIHKMTRQ 58
E+ ++S H + LHMA F R L+ ++DEI EL ++
Sbjct: 390 ELSDRLSKKGWHFNALQKPVALHMA--FTR--LSAHVVDEICDILRTTVQELKSESNSKP 445
Query: 59 NKAGNTVLHATATSSRALPVADKLL 83
+ G + L+ A S + VADKL+
Sbjct: 446 SPDGTSALYGVAGSVKTAGVADKLI 470
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 7 EVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEI--------PELYIHKMTRQ 58
E+ ++S H + LHMA F R L+ ++DEI EL ++
Sbjct: 390 ELSDRLSKKGWHFNALQKPVALHMA--FTR--LSAHVVDEICDILRTTVQELKSESNSKP 445
Query: 59 NKAGNTVLHATATSSRALPVADKLL 83
+ G + L+ A S + VADKL+
Sbjct: 446 SPDGTSALYGVAGSVKTAGVADKLI 470
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 56 TRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNF 115
R K+G T LH A ++ KLL +A + +++ +G T L +A +GK +
Sbjct: 193 VRHAKSGGTALHVAA--AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250
Query: 116 LAGKIADYDQPSK 128
L + D + +K
Sbjct: 251 LVENLCDMEAVNK 263
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 17 LHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSR 74
LH + +H D+ LH+A R D + L ++ T +NK G T L + +S+
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV-----TLKNKEGETPLQCASLNSQ 222
>pdb|2CI1|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With S-Nitroso-
Lhomocysteine
Length = 276
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 3 KKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAG 62
+K +++ +++SDH LTV DDT + Y LL PE Y K
Sbjct: 188 QKALKIMQQMSDHRYDKLTVPDDTAAN-CIYLNIPSKGHVLLHRTPEEYPESAKVYEKLK 246
Query: 63 NTVLHATATSSRALPVADKLLRKAPGLL 90
+ +L +PV++ L K GLL
Sbjct: 247 DHML---------IPVSNSELEKVDGLL 265
>pdb|2C6Z|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With Citrulline
pdb|2CI3|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase Crystal Form I
pdb|2CI4|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I Crystal Form Ii
pdb|2CI5|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With L-Homocysteine
pdb|2CI5|B Chain B, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With L-Homocysteine
pdb|2CI6|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I Bound With Zinc Low Ph
pdb|2CI7|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With Zinc, High Ph
Length = 284
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 3 KKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAG 62
+K +++ +++SDH LTV DDT + Y LL PE Y K
Sbjct: 194 QKALKIMQQMSDHRYDKLTVPDDTAAN-CIYLNIPSKGHVLLHRTPEEYPESAKVYEKLK 252
Query: 63 NTVLHATATSSRALPVADKLLRKAPGLL 90
+ +L +PV++ L K GLL
Sbjct: 253 DHML---------IPVSNSELEKVDGLL 271
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 101 LFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEY 160
L +AR G+ D L AD + N T LH+A +S H E+ +E+ ++
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVD-------NTGLTPLHLAAVSGHLEI-VEVLLKH 69
Query: 161 KYLIGEKDMDGMTALQL 177
+ D+ G T L L
Sbjct: 70 GADVDAADVYGFTPLHL 86
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 101 LFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEY 160
L +AR G+ D L AD + N +T LH+A S H E+ +E+ ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAAD-------NTGTTPLHLAAYSGHLEI-VEVLLKH 69
Query: 161 KYLIGEKDMDGMTALQL 177
+ D+ G T L L
Sbjct: 70 GADVDASDVFGYTPLHL 86
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 17 LHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLH 67
++V+ DDT LH+A D+ KLL Y + N+ GN LH
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQ-----YKADINAVNEHGNVPLH 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,755,213
Number of Sequences: 62578
Number of extensions: 216510
Number of successful extensions: 536
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 51
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)