BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037878
(2280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From L.
Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 268 bits (686), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 186/594 (31%), Positives = 289/594 (48%), Gaps = 45/594 (7%)
Query: 464 EFPELSSLDGYLKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSR 523
E+ + SL ++ H +K T++N+E TYE+LD +A IA L
Sbjct: 6 EYLQCQSLVDVVRLRALHSPNKKSC--TFLNKE--LEETXTYEQLDQHAKAIAATLQAEG 61
Query: 524 KPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKXXXXXXXXXXXXQRGGQALLKIENISKSC 583
KPGDRVLL++ PGL + AF GC+ A + +A + N SK
Sbjct: 62 A---KPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTN-SKPV 117
Query: 584 GAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQFT 643
+ I I +A + + P +L + S L + T + +D+ FLQ+T
Sbjct: 118 IVLXIADHIKKFTADELNTNPK--FLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYT 175
Query: 644 SGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGS 703
SGST KGV ++H L+ N+ + + +T++ SWLP +HD GLIG + T + GG
Sbjct: 176 SGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIYGGI 235
Query: 704 TAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKF 763
AI SP +F++NPL WL+ ++KY+AT S PNFA++ V+R+ ++K DLSS
Sbjct: 236 QAIXXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIR--EEKKEGLDLSSWVT 293
Query: 764 LMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCA-------------- 809
AEPVR+ T + F + + FG + P YGLAE + V+
Sbjct: 294 AFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKE 353
Query: 810 -YGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868
+ + D V +P +++I++P+T + + GE+W+ S S G
Sbjct: 354 QFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPC-DFDQVGEIWVQSNSVAKG 412
Query: 869 YWGREELSQITFRNELQNN-RGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSAD 927
YW + E ++ F +++++ R Y RTGDLG + + + ++TGRIKDLII+ G+N Y D
Sbjct: 413 YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLIIIYGKNHYPQD 472
Query: 928 VEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPVD---K 984
+E ++ S H G CA + EE + L V EV++ D
Sbjct: 473 IEFSLXHSPLHHVLGKCAAFVIQEE-------------HEYKLTVXCEVKNRFXDDVAQD 519
Query: 985 DVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDGTLNTV 1038
++ I V E H + V ++ LI + TTSGKI+R C K +D TL V
Sbjct: 520 NLFNEIFELVYENHQLEVHTIVLIPLKAXPHTTSGKIRRNFCRKHLLDKTLPIV 573
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 211 bits (538), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 174/557 (31%), Positives = 258/557 (46%), Gaps = 70/557 (12%)
Query: 501 NQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKXXXXXX 560
+Q Y+ L A A A +LL+ +K GDRV L+ +FV+AFF C A
Sbjct: 47 DQLEYQTLKARAEAGAKRLLSLN---LKKGDRVALIAETSSEFVEAFFACQYAGLVAVPL 103
Query: 561 XXXXXXQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLH--TDSWVKNS 618
+ K++ + SC AI++ + V + N P LH + +W K
Sbjct: 104 AIPXGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDN-PELHVLSHAWFK-- 160
Query: 619 KNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR-YKSTSKT 677
L E V P+D+ +LQ+TSGST +GV+ITH + N++ + K
Sbjct: 161 --ALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGD 218
Query: 678 VLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNF 737
VSWLP YHD GL+G L T + + F PL WL+ +SK R T S P F
Sbjct: 219 RCVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTVSVAPPF 278
Query: 738 AFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGY 797
+EL RR+ + KD + DLS + + AEP+ + +F E R P Y
Sbjct: 279 GYELCQRRV-NEKD-LAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCY 336
Query: 798 GLAENCVFVSCAYGQGKPI-------ILDWQGR--------------VCCGYVDQNDPDV 836
GLAEN + VS + + IL++QG+ V CG + P+
Sbjct: 337 GLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCG---KALPEH 393
Query: 837 DIRIVNPETSEEIGEPGKE---GEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYT 893
I I N E G P E G + IS PS GY+G +++SQ +E+ +
Sbjct: 394 GIEIRN-----EAGXPVAERVVGHICISGPSLXSGYFG-DQVSQ----DEIA---ATGWL 440
Query: 894 RTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEV 953
TGDLG ++DG ++TGRIKDLII+ GRN++ D+E E E A + E++
Sbjct: 441 DTGDLGYLLDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKI 500
Query: 954 LSTKGISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTM 1013
+ +SD E R G+ +I + R+ E GVT A++ L+ P ++
Sbjct: 501 ILQIQCRISD-----------EERRGQ-----LIHALAARIQSEFGVT-AAIDLLPPHSI 543
Query: 1014 SKTTSGKIKRFECLKQF 1030
+T+SGK R E K++
Sbjct: 544 PRTSSGKPARAEAKKRY 560
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 143/467 (30%), Positives = 223/467 (47%), Gaps = 58/467 (12%)
Query: 482 RITQKKTLFTWINEE----GVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVY 537
R+ FT+++ E GVA+ T+ +L +A +L SR GDRV++
Sbjct: 35 RLQPHDPAFTFMDYEQDWDGVAITL-TWSQLYRRTLNVAQEL--SR--CGSTGDRVVISA 89
Query: 538 VPGLDFVDAFFGCMRAKXXXXXXXXXXXXQRGGQALLKIENISKSCGAVAILST------ 591
GL++V AF G ++A +GG + +++ VAIL+T
Sbjct: 90 PQGLEYVVAFLGALQAGRIAVPLSV----PQGGVTDERSDSVLSDSSPVAILTTSSAVDD 145
Query: 592 IGYHSAVRVGSWPNLPWLHTDSWVK-NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDA 650
+ H A R G P S ++ + +L A N F E + +LQ+TSGST
Sbjct: 146 VVQHVARRPGESPP-------SIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTP 198
Query: 651 KGVMITHGGLIHNV-KLMRKRYKSTS-----KTVLVSWLPQYHDMGLIGGLFTAMVGGST 704
GV+++H + N +LM + T + LVSWLP YHDMGL+ G+ ++GG
Sbjct: 199 AGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYP 258
Query: 705 AILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFL 764
A+L SP++F++ P W+ M+ SA PNFAFEL RR ++ D + DL ++ +
Sbjct: 259 AVLTSPVSFLQRPARWMHLMASDFHAFSAAPNFAFELAARR--TTDDDMAGRDLGNILTI 316
Query: 765 MVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDW---- 820
+ +E V+ T+KRF + F L + V+ P Y LAE V+V+ + P +D+
Sbjct: 317 LSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTES 376
Query: 821 ----QGRVCCG--------YVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868
+ C G Y+ P V RIV+ +T E + G GE+W+ + G
Sbjct: 377 LSAGHAKPCAGGGATSLISYMLPRSPIV--RIVDSDTCIECPD-GTVGEIWVHGDNVANG 433
Query: 869 YWGREELSQITFRNEL----QNNRGRKYTRTGDLGRIIDGKFFITGR 911
YW + + S+ TF ++ + RTGD G + DGK FI GR
Sbjct: 434 YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVTDGKMFIIGR 480
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 140/467 (29%), Positives = 217/467 (46%), Gaps = 58/467 (12%)
Query: 482 RITQKKTLFTWINEE----GVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVY 537
R+ FT+ + E GVA+ T+ +L +A +L SR GDRV++
Sbjct: 35 RLQPHDPAFTFXDYEQDWDGVAITL-TWSQLYRRTLNVAQEL--SR--CGSTGDRVVISA 89
Query: 538 VPGLDFVDAFFGCMRAKXXXXXXXXXXXXQRGGQALLKIENISKSCGAVAILST------ 591
GL++V AF G ++A +GG + +++ VAIL+T
Sbjct: 90 PQGLEYVVAFLGALQAGRIAVPLSV----PQGGVTDERSDSVLSDSSPVAILTTSSAVDD 145
Query: 592 IGYHSAVRVGSWPNLPWLHTDSWVK-NSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDA 650
+ H A R G P S ++ + +L A N F E + +LQ+TSGST
Sbjct: 146 VVQHVARRPGESPP-------SIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTP 198
Query: 651 KGVMITHGGLIHNVKLMRKRYKSTS------KTVLVSWLPQYHDMGLIGGLFTAMVGGST 704
GV+ +H + N + + Y + + + LVSWLP YHD GL+ G+ ++GG
Sbjct: 199 AGVVXSHQNVRVNFEQLXSGYFADTDGIPPPNSALVSWLPFYHDXGLVIGICAPILGGYP 258
Query: 705 AILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFL 764
A+L SP++F++ P W + SA PNFAFEL RR ++ D DL ++ +
Sbjct: 259 AVLTSPVSFLQRPARWXHLXASDFHAFSAAPNFAFELAARR--TTDDDXAGRDLGNILTI 316
Query: 765 MVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDW---- 820
+ +E V+ T+KRF + F L + V+ P YGLAE V+V+ + P +D+
Sbjct: 317 LSGSERVQAATIKRFADRFARFNLQERVIRPSYGLAEATVYVATSKPGQPPETVDFDTES 376
Query: 821 ----QGRVCCG--------YVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868
+ C G Y P V RIV+ +T E + G GE+W+ + G
Sbjct: 377 LSAGHAKPCAGGGATSLISYXLPRSPIV--RIVDSDTCIECPD-GTVGEIWVHGDNVANG 433
Query: 869 YWGREELSQITFRNEL----QNNRGRKYTRTGDLGRIIDGKFFITGR 911
YW + + S+ TF ++ + RTGD G + DGK FI GR
Sbjct: 434 YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVTDGKXFIIGR 480
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 142/319 (44%), Gaps = 22/319 (6%)
Query: 1707 ATTLKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSXXXXXX 1766
TTLK R H +G G G++TI ++ + P+H+ F G+ +P +RH+N
Sbjct: 56 GTTLKGFRRATHTVGTGGIGEITIVNDPK-FPEHEFFTAGRTFPARLRHANLKYPDDAGA 114
Query: 1767 XXXXXXXXXXFSDLNGNTSSLLDLTLKTGNA---FYARTIGDFATWLVCGLAAREEHVKR 1823
SD +G LD+ + TG A + + ++ DF + G AA E K
Sbjct: 115 DARSFSIKFADSDSDGP----LDIVMNTGEANIFWNSPSLEDFVP-VEEGDAAEEYVYKN 169
Query: 1824 VPHIRDAVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGED--SG- 1880
+ + V R D++A ++YYS + F+ DG+ Y +++ P D I E+ SG
Sbjct: 170 PYYYYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALPGDVDIKEEDESGR 229
Query: 1881 --EVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEA 1938
E E R I R +N+ RP +L E+ R+ V Y Q+QI D+
Sbjct: 230 LTEEEQRKIW-----IFSRHENEKRPDDYLRKEYVERLQK-GPVNYRLQIQIHEASPDDT 283
Query: 1939 MQDIALDCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQ 1998
WD+ +P+ D+ ++SI LS + EK FN + + ++ A +
Sbjct: 284 A--TIFHAGILWDKETHPWFDLAKVSIKTPLSPDVLEKTAFNIANQPASLGLLEAKSPED 341
Query: 1999 SASIDHGRSLIYEICQHLR 2017
SI R +Y QHLR
Sbjct: 342 YNSIGELRVAVYTWVQHLR 360
>pdb|1U5U|A Chain A, The Structure Of An Allene Oxide Synthase Reveals A Novel
Use For A Catalase Fold
pdb|1U5U|B Chain B, The Structure Of An Allene Oxide Synthase Reveals A Novel
Use For A Catalase Fold
Length = 374
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 142/319 (44%), Gaps = 22/319 (6%)
Query: 1707 ATTLKVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIFHPGKCYPVIVRHSNSLSXXXXXX 1766
TTLK R H +G G G++TI ++ + P+H+ F G+ +P +RH+N
Sbjct: 56 GTTLKGFRRATHTVGTGGIGEITIVNDPK-FPEHEFFTAGRTFPARLRHANLKYPDDAGA 114
Query: 1767 XXXXXXXXXXFSDLNGNTSSLLDLTLKTGNA---FYARTIGDFATWLVCGLAAREEHVKR 1823
SD +G LD+ + TG A + + ++ DF + G AA E K
Sbjct: 115 DARSFSIKFADSDSDGP----LDIVMNTGEANIFWNSPSLEDFVP-VEEGDAAEEYVYKN 169
Query: 1824 VPHIRDAVWKSLRLSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGED--SG- 1880
+ + V R D++A ++YYS + F+ DG+ Y +++ P D I E+ SG
Sbjct: 170 PYYYYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALPGDVDIKEEDESGR 229
Query: 1881 --EVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEA 1938
E E R I R +N+ RP +L E+ R+ V Y Q+QI D+
Sbjct: 230 LTEEEQRKIW-----IFSRHENEKRPDDYLRKEYVERLQK-GPVNYRLQIQIHEASPDDT 283
Query: 1939 MQDIALDCTKPWDEAEYPYIDVGEISIDQNLSTEESEKLEFNPYLKCNEIDVIPATTSSQ 1998
WD+ +P+ D+ ++SI LS + EK FN + + ++ A +
Sbjct: 284 A--TIFHAGILWDKETHPWFDLAKVSIKTPLSPDVLEKTAFNIANQPASLGLLEAKSPED 341
Query: 1999 SASIDHGRSLIYEICQHLR 2017
SI R +Y QHLR
Sbjct: 342 YNSIGELRVAVYTWVQHLR 360
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 90.1 bits (222), Expect = 1e-17, Method: Composition-based stats.
Identities = 94/321 (29%), Positives = 139/321 (43%), Gaps = 47/321 (14%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGL-IG 693
DDL + +TSG+TG + G M++H L N + ++ T VL+ LP YH GL +
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFELMVRRLESSKDK 752
T GS ++F P +P L+ M+ RAT G P F R L+S +
Sbjct: 215 SNVTLFARGS--MIFLPXF---DPDXILDLMA--RATVLMGVPTF----YTRLLQSPRLT 263
Query: 753 VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ 812
+ M+ + + P+ T + + T L + YG+ E + S Y
Sbjct: 264 XET--TGHMRLFISGSAPLLADTHREWSAXTGHAVLER------YGMTETNMNTSNPY-- 313
Query: 813 GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGR 872
G G V P V R+ +PET E+ G G + + P+ GYW
Sbjct: 314 --------DGDRVPGAVGPALPGVSARVTDPETGXELPR-GDIGMIEVXGPNVFXGYWRM 364
Query: 873 EELSQITFRNELQNNRGRKYTRTGDLGRIID-GKFFITGRIKDLIIVAGRNVYSADVEKT 931
E + FR++ + TGDLG I + G I GR DL+I G NVY ++E
Sbjct: 365 PEXTXSEFRDD-------GFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESE 417
Query: 932 VESSTEHIRPGCC--AVIGVP 950
+++ PG AVIGVP
Sbjct: 418 IDA-----MPGVVESAVIGVP 433
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 90.1 bits (222), Expect = 1e-17, Method: Composition-based stats.
Identities = 94/321 (29%), Positives = 139/321 (43%), Gaps = 47/321 (14%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGL-IG 693
DDL + +TSG+TG + G M++H L N + ++ T VL+ LP YH GL +
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFELMVRRLESSKDK 752
T GS ++F P +P L+ M+ RAT G P F R L+S +
Sbjct: 215 SNVTLFARGS--MIFLPXF---DPDXILDLMA--RATVLMGVPTF----YTRLLQSPRLT 263
Query: 753 VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ 812
+ M+ + + P+ T + + T L + YG+ E + S Y
Sbjct: 264 XET--TGHMRLFISGSAPLLADTHREWSAXTGHAVLER------YGMTETNMNTSNPY-- 313
Query: 813 GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGR 872
G G V P V R+ +PET E+ G G + + P+ GYW
Sbjct: 314 --------DGDRVPGAVGPALPGVSARVTDPETGXELPR-GDIGMIEVXGPNVFXGYWRM 364
Query: 873 EELSQITFRNELQNNRGRKYTRTGDLGRIID-GKFFITGRIKDLIIVAGRNVYSADVEKT 931
E + FR++ + TGDLG I + G I GR DL+I G NVY ++E
Sbjct: 365 PEXTXSEFRDD-------GFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESE 417
Query: 932 VESSTEHIRPGCC--AVIGVP 950
+++ PG AVIGVP
Sbjct: 418 IDA-----MPGVVESAVIGVP 433
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 90.1 bits (222), Expect = 1e-17, Method: Composition-based stats.
Identities = 94/321 (29%), Positives = 139/321 (43%), Gaps = 47/321 (14%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGL-IG 693
DDL + +TSG+TG + G M++H L N + ++ T VL+ LP YH GL +
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFELMVRRLESSKDK 752
T GS ++F P +P L+ M+ RAT G P F R L+S +
Sbjct: 215 SNVTLFARGS--MIFLPXF---DPDXILDLMA--RATVLMGVPTF----YTRLLQSPRLT 263
Query: 753 VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ 812
+ M+ + + P+ T + + T L + YG+ E + S Y
Sbjct: 264 XET--TGHMRLFISGSAPLLADTHREWSAXTGHAVLER------YGMTETNMNTSNPY-- 313
Query: 813 GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGR 872
G G V P V R+ +PET E+ G G + + P+ GYW
Sbjct: 314 --------DGDRVPGAVGPALPGVSARVTDPETGXELPR-GDIGMIEVXGPNVFXGYWRM 364
Query: 873 EELSQITFRNELQNNRGRKYTRTGDLGRIID-GKFFITGRIKDLIIVAGRNVYSADVEKT 931
E + FR++ + TGDLG I + G I GR DL+I G NVY ++E
Sbjct: 365 PEXTXSEFRDD-------GFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESE 417
Query: 932 VESSTEHIRPGCC--AVIGVP 950
+++ PG AVIGVP
Sbjct: 418 IDA-----MPGVVESAVIGVP 433
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 138/322 (42%), Gaps = 47/322 (14%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGL-IG 693
DDL + +TSG+TG +KG ++H L N + ++ T VL+ LP YH GL +
Sbjct: 155 DDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 694 GLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAG-PNFAFELMVRRLESSKDK 752
T GS +F P F + +L L RAT G P F R L+S +
Sbjct: 215 SNVTLFARGSX--IFLP-KFDPDKILDLXA----RATVLXGVPTF----YTRLLQSPR-- 261
Query: 753 VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ 812
+ + + + P+ T + + T L + YG E S Y
Sbjct: 262 LTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVLER------YGXTETNXNTSNPY-- 313
Query: 813 GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGR 872
G G V P V R+ +PET +E+ G G + + P+ GYW
Sbjct: 314 --------DGDRVPGAVGPALPGVSARVTDPETGKELPR-GDIGXIEVKGPNVFKGYWRX 364
Query: 873 EELSQITFRNELQNNRGRKYTRTGDLGRIID-GKFFITGRIKDLIIVAGRNVYSADVEKT 931
E ++ FR++ + TGDLG+I + G I GR KDL+I G NVY ++E
Sbjct: 365 PEKTKSEFRDD-------GFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESE 417
Query: 932 VESSTEHIRPGCC--AVIGVPE 951
+++ PG AVIGVP
Sbjct: 418 IDAX-----PGVVESAVIGVPH 434
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 100/406 (24%), Positives = 170/406 (41%), Gaps = 69/406 (16%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYH--DMGLI 692
+D+ + +T G+TG KGV +TH L N + + +V P +H + GL+
Sbjct: 180 EDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEFGLV 239
Query: 693 GGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDK 752
T G+ ++ N E + KY+ T S A ++V LESS
Sbjct: 240 NLXVTV---GNEYVVXGXF----NQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSN-- 290
Query: 753 VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ 812
+++D S +K A PV V++ ++L AE C + Q
Sbjct: 291 -KTYDWSYLKVFATGAWPVAPALVEKLLKLA----------------AEKCNNPRLRHNQ 333
Query: 813 GKPIILDWQGRVCCGYVDQNDP--------------DVDIRIVNPETSEEIGEPGKEGEV 858
W C V N P D+++++++ E E+G G+ GE+
Sbjct: 334 ------IWGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELG-VGESGEI 386
Query: 859 WISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFF-ITGRIKDLII 917
I P+ GYW RE+ +Q + + +GRK+ RTGD+G I + F R+K++I
Sbjct: 387 VIRGPNIFKGYWKREKENQECW---WYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIK 443
Query: 918 VAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVR 977
G + ++E + +H AVIG P+E G +V+
Sbjct: 444 YKGYTIAPFELEALL---XKHEAVXDVAVIGKPDE---------EAGEVPKAFIVLKPEY 491
Query: 978 DGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023
GK ++D+IE ++ R+ V V+ ++ + +T SGK+ R
Sbjct: 492 RGKVDEEDIIEWVRERISGYK--RVREVEFVE--ELPRTASGKLLR 533
>pdb|2B9W|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2B9X|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2B9Y|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2BA9|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2BAB|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2BAC|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
Length = 424
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 129/285 (45%), Gaps = 36/285 (12%)
Query: 153 YTASGYGFVQDMPYAYIHEF----TRTSMA-GKIRRFKGGYTSLWQKLSKYLPTEVHCNS 207
+TA GYG ++P AY+ ++ T S A G + + G ++++ L+ L N
Sbjct: 165 FTAFGYGHFDNVPAAYVLKYLDFVTMMSFAKGDLWTWADGTQAMFEHLNATLEHPAERNV 224
Query: 208 EVLAIRRDSTTVGVDVKHSNGECEVMEFDKIIISGAFPVKNGKFYRSPTSKPTESETQVM 267
++ I R+ V + + E +V+ + P E
Sbjct: 225 DITRITREDGKVHIHTTDWDRESDVLVL---------------------TVPLEKFLDYS 263
Query: 268 DMDELEKELFSKVQTIDYYTTVLKITGLEHLPVGFYYFGEYMDDPATIGHPVAMQKFFAD 327
D D+ E+E FSK+ Y ++ ++ P Y + M P +GH + +AD
Sbjct: 264 DADDDEREYFSKIIHQQY---MVDACLVKEYPTISGYVPDNMR-PERLGHVMVYYHRWAD 319
Query: 328 T-----DIFLFWSYGNSVDITGPTVTEVAIKTVENMGGVIENVVLQRRFKYFPHVNSKDM 382
+L ++ + D T ++ + +E G +E ++ ++ + YFPHV+S+D
Sbjct: 320 DPHQIITTYLLRNHPDYADKTQEECRQMVLDDMETFGHPVEKIIEEQTWYYFPHVSSEDY 379
Query: 383 KDGFYDRLEYELQGQRNTYYVGGLMAFELTERNSSYSMALMCKHF 427
K G+Y+++E +QG+RNT+Y G +M+F + YS L+ + F
Sbjct: 380 KAGWYEKVE-GMQGRRNTFYAGEIMSFGNFDEVCHYSKDLVTRFF 423
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 114/463 (24%), Positives = 183/463 (39%), Gaps = 72/463 (15%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKXXXXXXXXX 563
TY +++A A+R A +LT+ I GDRV L+ ++F F+G +
Sbjct: 45 TYAQMNALANRCAD-VLTALG--IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 101
Query: 564 XXXQRGGQALLKIENISKSCGAVAIL---STIGYHSAVRVGSWPN---LPWLHTDSWVKN 617
A ++ I G+ ++ + A+R + P W+ DS +
Sbjct: 102 L-------AAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAER 154
Query: 618 SKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKT 677
++ A+ E DD F+ +TSG+TG KGV+ TH + +
Sbjct: 155 LRSAAADEPA--VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRD 212
Query: 678 VLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPL-----LWLETMSKYRATHS 732
L+ LP +H L +F+AM G +T I P +W + +
Sbjct: 213 RLLLPLPMFHVAALTTVIFSAMRG---------VTLISMPQFDATKVWSLIVEERVCIGG 263
Query: 733 AGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGV 792
A P M + E ++ D ++ + P+ + +K + + + QG
Sbjct: 264 AVPAI-LNFMRQVPEFAE-----LDAPDFRYFITGGAPMPEALIKIYA--AKNIEVVQG- 314
Query: 793 MAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP 852
Y L E+C G ++L G + D+ + + I E
Sbjct: 315 ----YALTESC--------GGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV--IREH 360
Query: 853 GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIID-GKFFITGR 911
G EGEV I S YW R E ++ F N + RTGD+G I D G +I R
Sbjct: 361 G-EGEVVIKSDILLKEYWNRPEATRDAFDN--------GWFRTGDIGEIDDEGYLYIKDR 411
Query: 912 IKDLIIVAGRNVYSADVEKTVESSTEHIRPGC--CAVIGVPEE 952
+KD+II G NVY A++E + PG AVIG+P+E
Sbjct: 412 LKDMIISGGENVYPAEIESVIIGV-----PGVSEVAVIGLPDE 449
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 104/480 (21%), Positives = 193/480 (40%), Gaps = 66/480 (13%)
Query: 475 LKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVL 534
++ W T +T F W + + TY++L ++ +AH + + P DR
Sbjct: 7 IEKWAAE--TPDQTAFVWRDA------KITYKQLKEDSDALAHWISSEY-----PDDRSP 53
Query: 535 LVYVPGL--DFVDAFFGCMRAKXXXXXXXXXXXXQRGGQALLKIENISKSCGAVAILSTI 592
++ + + + F GC++A R ++ I+++ GA +LS
Sbjct: 54 IMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADR-------VQRIAENSGAKLLLSAT 106
Query: 593 GYHSA---VRVGSWPNLPWLHTDSWVKNSKNLL-AENVVCFTESQPDDLCFLQFTSGSTG 648
VR+ S NL D + + N E+ V + D+ ++ +TSGSTG
Sbjct: 107 AVTVTDLPVRIVSEDNL----KDIFFTHKGNTPNPEHAV-----KGDENFYIIYTSGSTG 157
Query: 649 DAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708
+ KGV IT+ L+ K + + + V ++ P D+ ++ ++ ++V G T
Sbjct: 158 NPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTLWAI 216
Query: 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAA 768
+ L+ ++ P+FA E+ + S+ L +MK +
Sbjct: 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFA-EMCLMEASFSESM-----LPNMKTFLFCG 270
Query: 769 EPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGY 828
E + ++ +E + + YG E V V+ + + +LD + GY
Sbjct: 271 EVLPNEVARKLIE-----RFPKATIMNTYGPTEATVAVTGIHVTEE--VLDQYKSLPVGY 323
Query: 829 VDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNR 888
D R++ + I G++GE+ I PS +GY G EL++ F
Sbjct: 324 CKS-----DCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAF----TMID 374
Query: 889 GRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIG 948
G + +TGD G + +G F GR+ I + G + ++E H+R C V G
Sbjct: 375 GERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIE-------HHLR-ACSYVEG 426
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 104/480 (21%), Positives = 193/480 (40%), Gaps = 66/480 (13%)
Query: 475 LKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGDRVL 534
++ W T +T F W + + TY++L ++ +AH + + P DR
Sbjct: 7 IEKWAAE--TPDQTAFVWRDA------KITYKQLKEDSDALAHWISSEY-----PDDRSP 53
Query: 535 LVYVPGL--DFVDAFFGCMRAKXXXXXXXXXXXXQRGGQALLKIENISKSCGAVAILSTI 592
++ + + + F GC++A R ++ I+++ GA +LS
Sbjct: 54 IMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADR-------VQRIAENSGAKLLLSAT 106
Query: 593 GYHSA---VRVGSWPNLPWLHTDSWVKNSKNLL-AENVVCFTESQPDDLCFLQFTSGSTG 648
VR+ S NL D + + N E+ V + D+ ++ +TSGSTG
Sbjct: 107 AVTVTDLPVRIVSEDNL----KDIFFTHKGNTPNPEHAV-----KGDENFYIIYTSGSTG 157
Query: 649 DAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILF 708
+ KGV IT+ L+ K + + + V ++ P D+ ++ ++ ++V G T
Sbjct: 158 NPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTLWAI 216
Query: 709 SPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAA 768
+ L+ ++ P+FA E+ + S+ L +MK +
Sbjct: 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFA-EMCLMEASFSESM-----LPNMKTFLFCG 270
Query: 769 EPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGY 828
E + ++ +E + + YG E V V+ + + +LD + GY
Sbjct: 271 EVLPNEVARKLIE-----RFPKATIMNTYGPTEATVAVTGIHVTEE--VLDQYKSLPVGY 323
Query: 829 VDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNR 888
D R++ + I G++GE+ I PS +GY G EL++ F
Sbjct: 324 CKS-----DCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAF----TMID 374
Query: 889 GRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIG 948
G + +TGD G + +G F GR+ I + G + ++E H+R C V G
Sbjct: 375 GERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIE-------HHLR-ACSYVEG 426
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 128/520 (24%), Positives = 200/520 (38%), Gaps = 67/520 (12%)
Query: 449 NWARNFKELEELPGVEFPELSSLDGY-LKHWGTHRITQKKTLFTWINEEGVAVNQSTYEE 507
N F +LP + P+ L Y L++ H + K L N + TY +
Sbjct: 2 NPQEEFIFRSKLPDIYIPKNLPLHSYVLENLSNH--SSKPCLINGANG-----DVYTYAD 54
Query: 508 LDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGC------MRAKXXXXXXX 561
++ A R+A L K I+ GD ++L +FV AF G + A
Sbjct: 55 VELTARRVASGL---NKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPA 111
Query: 562 XXXXXQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLP--WLHTDSWVKNSK 619
+ +A L I +++C + S V+V + P LH + +
Sbjct: 112 ELAKHAKASRAKLLI---TQACYYEKV-KDFARESDVKVMCVDSAPDGCLHFSELTQADE 167
Query: 620 NLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLM----RKRYKSTS 675
N + + PDD+ L ++SG+TG KGVM+TH GLI +V S
Sbjct: 168 NEAPQ-----VDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHS 222
Query: 676 KTVLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGP 735
+ V++ LP +H L + + G+ IL P F LL L + KY+ S P
Sbjct: 223 EDVILCVLPMFHIYALNSIMLCGLRVGAP-ILIMP-KFEIGSLLGL--IEKYKV--SIAP 276
Query: 736 NFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP 795
+M DK DLSS++ + P+ + +E T Q +
Sbjct: 277 VVPPVMMSIAKSPDLDK---HDLSSLRMIKSGGAPLGKE-----LEDTVRAKFPQARLGQ 328
Query: 796 GYGLAE-NCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGK 854
GYG+ E V C +P + CG V +N +++IV+PET + +
Sbjct: 329 GYGMTEAGPVLAMCLAFAKEPFDIKPGA---CGTVVRN---AEMKIVDPETGASLPR-NQ 381
Query: 855 EGEVWISSPSAGIGYWGREELSQITFRNE--LQNNRGRKYTRTGDLGRIIDGKFFITGRI 912
GE+ I GY E + T E L +L FI R+
Sbjct: 382 PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDEL--------FIVDRL 433
Query: 913 KDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEE 952
K+LI G V A++E + H AV+G+ +E
Sbjct: 434 KELIKYKGFQVAPAELEALL---IAHPEISDAAVVGLKDE 470
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 135/329 (41%), Gaps = 38/329 (11%)
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSW 682
AE V F+ + D++ F Q + GSTG K + TH ++V+ + S T L+
Sbjct: 179 AETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCA 238
Query: 683 LPQYHDMGLI--GGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFE 740
LP H+ L G L GG + +P PL + +++ ++ A
Sbjct: 239 LPAPHNFMLSSPGALGVLHAGGCVVMAPNP-----EPLNCFSIIQRHQVNMASLVPSAVI 293
Query: 741 LMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMA-PGYGL 799
+ + + KD+++S L + RQ +L + FG+++G++
Sbjct: 294 MWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDD 353
Query: 800 AENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVW 859
++ +F + QG+PI D +I+IV+ E E+ E G+ G +
Sbjct: 354 SDEQIFTT----QGRPI----------------SSDDEIKIVD-EQYREVPE-GEIGMLA 391
Query: 860 ISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDL-GRIIDGKFFITGRIKDLIIV 918
P GY+ E + F + Y +GDL R DG + GRIKD I
Sbjct: 392 TRGPYTFCGYYQSPEHNSQVFDED-------NYYYSGDLVQRTPDGNLRVVGRIKDQINR 444
Query: 919 AGRNVYSADVEKTVESSTEHIRPGCCAVI 947
G + S ++EK + E + A++
Sbjct: 445 GGEKIASEEIEKLILLHPEVMHAALVAIV 473
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 101/415 (24%), Positives = 173/415 (41%), Gaps = 48/415 (11%)
Query: 623 AENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKST----SKTV 678
A V+ E PDD+ L ++SG+TG KGVM+TH GL+ +V S V
Sbjct: 213 ASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDV 272
Query: 679 LVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFA 738
++ LP +H L + + G+ AIL P I L LE + + + T P
Sbjct: 273 ILCVLPMFHIYALNSIMLCGLRVGA-AILIMPKFEIN---LLLELIQRCKVT--VAPMVP 326
Query: 739 FELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYG 798
++ S +K +DLSS++ + A P+ + ++ V P + GYG
Sbjct: 327 PIVLAIAKSSETEK---YDLSSIRVVKSGAAPLGK-ELEDAVNAKFP----NAKLGQGYG 378
Query: 799 LAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEV 858
+ E ++ + G K G CG V +N +++IV+P+T + + + GE+
Sbjct: 379 MTEAGPVLAMSLGFAKEPFPVKSG--ACGTVVRN---AEMKIVDPDTGDSLSR-NQPGEI 432
Query: 859 WISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIV 918
I GY L+ E + G +T D + FI R+K+LI
Sbjct: 433 CIRGHQIMKGY-----LNNPAATAETIDKDGWLHTGD-IGLIDDDDELFIVDRLKELIKY 486
Query: 919 AGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRD 978
G V A++E + H AV+ + EE + +V + + + +D
Sbjct: 487 KGFQVAPAELEALL---IGHPDITDVAVVAMKEE-----------AAGEVPVAFVVKSKD 532
Query: 979 GKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDG 1033
+ + DV + + +VV + K+ ++ K SGKI R + + +G
Sbjct: 533 SELSEDDVKQFVSKQVVFYKRIN----KVFFTESIPKAPSGKILRKDLRAKLANG 583
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 93/409 (22%), Positives = 169/409 (41%), Gaps = 73/409 (17%)
Query: 632 SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMG- 690
++ +D+C + F+SG+ G K M+ H ++ +Y + + + G
Sbjct: 222 TKNEDICLVYFSSGTAGFPK--MVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGK 279
Query: 691 -LIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESS 749
+ G L+ + G ++ F +L E SKY T P + ++
Sbjct: 280 CVWGKLYGQWIAGCAVFVYDYDRFEAKNML--EKASKYGVTTFCAPPTIYRFLI------ 331
Query: 750 KDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSC- 808
K+ + ++ S++K+ +VA EP+ RF+E T G+ + G+G E V ++
Sbjct: 332 KEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT---GIK---LMEGFGQTETVVTIATF 385
Query: 809 AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISS----PS 864
+ + KP G + + P I +++ + + E G+EGE+ I++ P
Sbjct: 386 PWMEPKP-----------GSIGKPTPGYKIELMDRDG--RLCEVGEEGEIVINTMEGKPV 432
Query: 865 AGIGYWGRE-ELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRN 922
++G++ E ++ T+ + Y TGD+ + DG + GR D+I +G
Sbjct: 433 GLFVHYGKDPERTEETWHD--------GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYK 484
Query: 923 VYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVRDGKPV 982
V +VE + +H CA+ GVP+ V QV I +D P
Sbjct: 485 VGPFEVESAL---IQHPAVLECAITGVPDPVRG-----------QVIKATIVLTKDYTPS 530
Query: 983 DKDVIENIKTRVVEEHGVTVASVKLIKPR------TMSKTTSGKIKRFE 1025
D ++K + + A K PR + KT SGKI+R E
Sbjct: 531 D-----SLKNELQDHVKNVTAPYKY--PRIIEFVPELPKTISGKIRRVE 572
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 143/342 (41%), Gaps = 55/342 (16%)
Query: 627 VCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQY 686
V E + D+ FLQ + GSTG +K + TH I+++K + TV ++ LP
Sbjct: 174 VKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMA 233
Query: 687 HDM-----GLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFEL 741
H+ G++G L+ GG + SP PL+ E ++ + P A
Sbjct: 234 HNYPLSSPGVLGVLYA---GGRVVLSPSPSPDDAFPLIEREKVT----ITALVPPLAMVW 286
Query: 742 MVRRLESSKDKVRSFDLSSMKFLMV-----AAEPVRQTTVKRFVELTRPFGLSQGVMAPG 796
M R DLSS++ L V +AE R+ L + FG+++G++
Sbjct: 287 M------DAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYT 340
Query: 797 YGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEG 856
+ V+ QGKP+ + RV D +D DV +PG+ G
Sbjct: 341 RLDDPEEIIVNT---QGKPMSPYDESRVW----DDHDRDV--------------KPGETG 379
Query: 857 EVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDL 915
+ P GY+ EE + +F + + RTGD+ R+ DG + GR KD
Sbjct: 380 HLLTRGPYTIRGYYKAEEHNAASFTED-------GFYRTGDIVRLTRDGYIVVEGRAKDQ 432
Query: 916 IIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTK 957
I G V + +VE + + H A++ +P++ L +
Sbjct: 433 INRGGEKVAAEEVENHLLA---HPAVHDAAMVSMPDQFLGER 471
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 156/405 (38%), Gaps = 73/405 (18%)
Query: 583 CGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCFTESQPDDLCFLQF 642
G + L + A+ GS P P+ K+L ++ E D +
Sbjct: 118 AGVLPSLGGVKKAYAIGDGSGPFAPF----------KDLASDTPFSAPEFGAADGFVIIH 167
Query: 643 TSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTAMVGG 702
T+ G +G +I+ G L+ + ++ T V + LP +H GL G + T G
Sbjct: 168 TAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL-GLMLTLQQAG 226
Query: 703 STAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDLSSMK 762
+++ + +P + ++ T A F M L + D+ L+S++
Sbjct: 227 GASVIAAKF----DPAQAARDIEAHKVTVMA----EFAPM---LGNILDQAAPAQLASLR 275
Query: 763 FLMVAAEPVRQTTVKRFVELTRP-------FGLSQGVMAPGYGLAENCVFVSCAYGQGKP 815
+ P T++RF E T P FG S+ GL+ + G+P
Sbjct: 276 AVTGLDTP---ETIERF-EATCPNATFWATFGQSET-----SGLSTFAPYRDRPKSAGRP 326
Query: 816 IILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREEL 875
+ W+ VD D + PG+ GE+ + P+ GYW
Sbjct: 327 LF--WR---TVAVVDAEDRPL--------------PPGEVGEIVLRGPTVFKGYWNNAAA 367
Query: 876 SQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRI--KDLIIVAGRNVYSADVEKTV 932
+Q FRN + TGD+GR DG F GR K+LI G NVY A+VE +
Sbjct: 368 TQHAFRN--------GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGAL 419
Query: 933 ESSTEHIRPGCCAVIGVPEEVLS--TKGISVSDGSDQVGLVVIAE 975
+ +H VIGVP+ S K + V + + +AE
Sbjct: 420 K---QHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAE 461
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 144/345 (41%), Gaps = 61/345 (17%)
Query: 627 VCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQY 686
V E + D+ FLQ + GSTG +K + TH I+++K + TV ++ LP
Sbjct: 174 VKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPXA 233
Query: 687 HDM-----GLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFEL 741
H+ G++G L+ GG + SP PL+ E ++ + P A +
Sbjct: 234 HNYPLSSPGVLGVLYA---GGRVVLSPSPSPDDAFPLIEREKVT----ITALVPPLA-XV 285
Query: 742 MVRRLESSKDKVRSFDLSSMKFLMV-----AAEPVRQTTVKRFVELTRPFGLSQGVMAPG 796
S +D DLSS++ L V +AE R+ L + FG ++G++
Sbjct: 286 WXDAASSRRD-----DLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLV--N 338
Query: 797 YGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQ---NDPDVDIRIVNPETSEEIGEPG 853
Y ++ + II++ QG+ Y + +D D D++ PG
Sbjct: 339 YTRLDDP----------EEIIVNTQGKPXSPYDESRVWDDHDRDVK------------PG 376
Query: 854 KEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRI 912
+ G + P GY+ EE + +F + + RTGD+ R+ DG + GR
Sbjct: 377 ETGHLLTRGPYTIRGYYKAEEHNAASFTED-------GFYRTGDIVRLTRDGYIVVEGRA 429
Query: 913 KDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTK 957
KD I G V + +VE + + H A + P++ L +
Sbjct: 430 KDQINRGGEKVAAEEVENHLLA---HPAVHDAAXVSXPDQFLGER 471
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 168/408 (41%), Gaps = 74/408 (18%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKT-VLVSWLPQYHDMGLIG 693
DD+ F ++SGSTG KG + TH L +L K ++ V+ S + GL
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242
Query: 694 GLFTAMVGGSTAILFSPLTFIKNPLL--WLETMSKYRATHSAG-PNFAFELMVRRLESSK 750
GL + G+TAIL + + P + ++R T G P ++V ++
Sbjct: 243 GLTFPLSVGATAILMA-----ERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPAR 297
Query: 751 DKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENC-VFVSCA 809
V +++ A E + + +RF T FG + G G E +F+S
Sbjct: 298 ADV------AIRICTSAGEALPREIGERF---TAHFGCE---ILDGIGSTEMLHIFLSNR 345
Query: 810 YGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP---GKEGEVWISSPSAG 866
G + GR GY ++++R +E G G+ G+++I PSA
Sbjct: 346 AGA---VEYGTTGRPVPGY------EIELR-------DEAGHAVPDGEVGDLYIKGPSAA 389
Query: 867 IGYWGREELSQITFRNELQNNRGRKYTRTGD-LGRIIDGKFFITGRIKDLIIVAGRNVYS 925
+ YW E S+ TF E + R+GD R+ +G + GR D++ V+G+ V
Sbjct: 390 VMYWNNREKSRATFLGE--------WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSP 441
Query: 926 ADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLV----VIAEVRDGKP 981
+VE + +H AV+GV D GLV + R+ P
Sbjct: 442 VEVEMVL---VQHDAVLEAAVVGV----------------DHGGLVKTRAFVVLKREFAP 482
Query: 982 VDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQ 1029
+ + E +K V + ++ + KT +GKI+RF+ +Q
Sbjct: 483 -SEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 92/436 (21%), Positives = 168/436 (38%), Gaps = 51/436 (11%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKXXXXXXXXX 563
+Y ELD A+RIA +L +K G V L L+ V G ++A
Sbjct: 491 SYRELDEEANRIARRL---QKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPK 547
Query: 564 XXXQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLA 623
R I + A +L+ H ++ + LP+ T ++ +
Sbjct: 548 LPEDR-------ISYMLADSAAACLLT----HQEMKEQA-AELPYTGTTLFIDDQTRFEE 595
Query: 624 ENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHG---GLIHNVKLMRKRYKSTSKTVLV 680
+ T P+D ++ +TSG+TG KG + TH GL+ +V M + T +V
Sbjct: 596 QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQDTFLSV-- 653
Query: 681 SWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFE 740
Y + +M+ + I+ T LL E ++ + FA
Sbjct: 654 ---SNYAFDAFTFDFYASMLNAARLIIADEHT-----LLDTERLTDLILQENVNVMFATT 705
Query: 741 LMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLA 800
+ L + + + ++ ++ E V++ + + P G + YG
Sbjct: 706 ALFNLLTDAGEDW----MKGLRCILFGGERASVPHVRKALRIMGP-----GKLINCYGPT 756
Query: 801 ENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWI 860
E VF + ++ D + + + + + I+N ++ ++ G GE+ I
Sbjct: 757 EGTVFATAH------VVHDLPDSISSLPIGKPISNASVYILNEQS--QLQPFGAVGELCI 808
Query: 861 SSPSAGIGYWGREELSQITFRNELQN--NRGRKYTRTGDLGR-IIDGKFFITGRIKDLII 917
S GY R +L++ F ++N G RTGDL R + DG GRI D +
Sbjct: 809 SGMGVSKGYVNRADLTKEKF---IENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVK 865
Query: 918 VAGRNVYSADVEKTVE 933
+ G + ++EK ++
Sbjct: 866 IRGHRIELEEIEKQLQ 881
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 138/325 (42%), Gaps = 44/325 (13%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY---KSTSKTVLVSWLPQYHDMGL 691
+ + + +SGSTG KGV +TH ++ R + + T +++ +P +H G+
Sbjct: 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM 251
Query: 692 IGGLFTAMVGGSTAIL--FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESS 749
L + G +L F TF+K T+ Y+ T+ F ++ +
Sbjct: 252 FTTLGYLICGFRVVMLTKFDEETFLK-------TLQDYKCTNVILVPTLFAIL-----NK 299
Query: 750 KDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCA 809
+ + +DLS++ + P+ + + + R F L GV GYGL E
Sbjct: 300 SELLNKYDLSNLVEIASGGAPLSKEVGE---AVARRFNLP-GVRQ-GYGLTETT------ 348
Query: 810 YGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGY 869
II+ +G G + P ++++ +T + +G P + GEV + P GY
Sbjct: 349 ----SAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLG-PNRRGEVCVKGPMLMKGY 403
Query: 870 WGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGK-FFITGRIKDLIIVAGRNVYSADV 928
E ++ EL + G + TGD+G + K FFI R+K LI G V A++
Sbjct: 404 VNNPEATK-----ELIDEEG--WLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAEL 456
Query: 929 EKTVESSTEHIRPGCCAVIGVPEEV 953
E + +H V GVP+ V
Sbjct: 457 ESVL---LQHPSIFDAGVAGVPDPV 478
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 137/325 (42%), Gaps = 44/325 (13%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY---KSTSKTVLVSWLPQYHDMGL 691
+ + + +SGSTG KGV +TH ++ R + + T +++ +P +H G+
Sbjct: 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM 251
Query: 692 IGGLFTAMVGGSTAIL--FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESS 749
L + G +L F TF+K T+ Y+ T F ++ +
Sbjct: 252 FTTLGYLICGFRVVMLTKFDEETFLK-------TLQDYKCTSVILVPTLFAIL-----NK 299
Query: 750 KDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCA 809
+ + +DLS++ + P+ + + + R F L GV GYGL E
Sbjct: 300 SELLNKYDLSNLVEIASGGAPLSKEVGE---AVARRFNLP-GVRQ-GYGLTETT------ 348
Query: 810 YGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGY 869
II+ +G G + P ++++ +T + +G P + GEV + P GY
Sbjct: 349 ----SAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLG-PNRRGEVCVKGPMLMKGY 403
Query: 870 WGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGK-FFITGRIKDLIIVAGRNVYSADV 928
E ++ EL + G + TGD+G + K FFI R+K LI G V A++
Sbjct: 404 VNNPEATK-----ELIDEEG--WLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAEL 456
Query: 929 EKTVESSTEHIRPGCCAVIGVPEEV 953
E + +H V GVP+ V
Sbjct: 457 ESVL---LQHPSIFDAGVAGVPDPV 478
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 137/325 (42%), Gaps = 44/325 (13%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRY---KSTSKTVLVSWLPQYHDMGL 691
+ + + +SGSTG KGV +TH ++ R + + T +++ +P +H G+
Sbjct: 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM 251
Query: 692 IGGLFTAMVGGSTAIL--FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESS 749
L + G +L F TF+K T+ Y+ T F ++ +
Sbjct: 252 FTTLGYLICGFRVVMLTKFDEETFLK-------TLQDYKCTSVILVPTLFAIL-----NK 299
Query: 750 KDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCA 809
+ + +DLS++ + P+ + + + R F L GV GYGL E
Sbjct: 300 SELLNKYDLSNLVEIASGGAPLSKEVGE---AVARRFNLP-GVRQ-GYGLTETT------ 348
Query: 810 YGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGY 869
II+ +G G + P ++++ +T + +G P + GEV + P GY
Sbjct: 349 ----SAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLG-PNRRGEVCVKGPMLMKGY 403
Query: 870 WGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGK-FFITGRIKDLIIVAGRNVYSADV 928
E ++ EL + G + TGD+G + K FFI R+K LI G V A++
Sbjct: 404 VNNPEATK-----ELIDEEG--WLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAEL 456
Query: 929 EKTVESSTEHIRPGCCAVIGVPEEV 953
E + +H V GVP+ V
Sbjct: 457 ESVL---LQHPSIFDAGVAGVPDPV 478
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 108/450 (24%), Positives = 174/450 (38%), Gaps = 67/450 (14%)
Query: 501 NQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKXXXXXX 560
++ +Y LDA + +A LL ++PGDRV L PG + + A ++
Sbjct: 59 DRISYGRLDAWSDAVARTLLAEG---VRPGDRVALRMSPGAEAIVAILAILKCGAAYVPV 115
Query: 561 XXXXXXQRGGQALLKIENISKSCGAVAILSTIGYHSAV-RVGSWPNLPWLHTDSWVKNSK 619
R + I GA A++ AV RV + T + V K
Sbjct: 116 DLRNPVSRS-------DFILADSGASALIGEPHEGCAVTRV--------VRTAA-VAECK 159
Query: 620 NLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVL 679
+ V +D+ ++ +TSG+TG+ KGV + H ++ + + +
Sbjct: 160 DAEPGPVTGAPGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDD-- 217
Query: 680 VSWLPQYHDMGL------IGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSA 733
WL +H + I G F+ G +L P + P +L + T
Sbjct: 218 -RWL-LFHSLSFDFSVWEIWGAFS--TGAELVVL--PHWAARTPEQYLAVIIDRGVTVIN 271
Query: 734 GPNFAFELMVRRLESSKDKVRS-FDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGV 792
AF L ++ VR D+S +++++ E + T + FGL +
Sbjct: 272 QTPTAF------LALTEAAVRGGRDVSGLRYVIFGGE---KLTAPMLRPWAKAFGLDRPR 322
Query: 793 MAPGYGLAENCVF-----VSCAY-GQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETS 846
+ GYG+ E VF ++ AY Q II GR P R+V +
Sbjct: 323 LVNGYGITETTVFTTFEEITEAYLAQDASII----GRAL--------PSFGTRVVGDDGR 370
Query: 847 EEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGR--KYTRTGDL-GRIID 903
+ PG+ GE+W+S GY R EL+ F G +Y RTGDL + D
Sbjct: 371 DVA--PGETGELWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGDLVSELPD 428
Query: 904 GKFFITGRIKDLIIVAGRNVYSADVEKTVE 933
G+F GR I + G + +D+E V
Sbjct: 429 GRFAYEGRADLQIKLRGYRIELSDIETAVR 458
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 130/305 (42%), Gaps = 30/305 (9%)
Query: 639 FLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGLFTA 698
++ +TSGSTG+ KGV I+ L + + + + ++ P D+ ++ L+
Sbjct: 147 YIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMD-LYPC 205
Query: 699 MVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRSFDL 758
+ G T + K +L+ E ++ P+F ++ + S+D + D
Sbjct: 206 LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFV-QMCLMDPGFSQDLLPHADT 264
Query: 759 SSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPIIL 818
M E + + K +E + + YG E V V+ I
Sbjct: 265 -----FMFCGEVLPVSVAKALLER-----FPKAKIFNTYGPTEATVAVTSV-----EITN 309
Query: 819 DWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP---GKEGEVWISSPSAGIGYWGREEL 875
D R V PD++I I++ E G+P G++GE+ I+ PS GY G EL
Sbjct: 310 DVISRSESLPVGFAKPDMNIFIMDEE-----GQPLPEGEKGEIVIAGPSVSRGYLGEPEL 364
Query: 876 SQITFRNELQNNRGRKYTRTGDLGRIIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESS 935
++ F + + G+ RTGD G I DG+ F GR+ I + G + ++E V S
Sbjct: 365 TEKAFFS----HEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQS 420
Query: 936 TEHIR 940
+++R
Sbjct: 421 -QYVR 424
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 94/420 (22%), Positives = 167/420 (39%), Gaps = 55/420 (13%)
Query: 630 TESQPDDLCFLQFTSGSTGDAKGVM-ITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHD 688
T +D FL +TSGSTG KGV T G L+ + MR + + + V + D
Sbjct: 257 TPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFT----AGD 312
Query: 689 MGLIGG----LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVR 744
+G I G ++ ++ G ++F N + + + +++ T A L+ R
Sbjct: 313 IGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKR 372
Query: 745 RLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCV 804
+S + + L S++ L EP+ + + E G ++ + Y E+
Sbjct: 373 AGDSY---IENHSLKSLRCLGSVGEPIAAEVWEWYSE---KIGKNEIPIVDTYWQTESGS 426
Query: 805 FVSCAYGQG----KPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWI 860
+ G KP G + +D +++P T EE+ EG + +
Sbjct: 427 HLVTPLAGGVTPMKP------GSASFPFFG-----IDAVVLDPNTGEELNTSHAEGVLAV 475
Query: 861 SS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGD-LGRIIDGKFFITGRIKDLII 917
+ PS W + T+ N Y TGD + DG +I GR+ D++
Sbjct: 476 KAAWPSFARTIWKNHDRYLDTYLNPYPG-----YYFTGDGAAKDKDGYIWILGRVDDVVN 530
Query: 918 VAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSDGSDQVGLVVIAEVR 977
V+G + +A++E + E CAV+G +++ G VV+
Sbjct: 531 VSGHRLSTAEIEAAI---IEDPIVAECAVVGFNDDLT---------GQAVAAFVVLKNKS 578
Query: 978 DGKPVDKDVIENIKTRVV----EEHGVTVASVKLIKPRTMSKTTSGKIKRFECLKQFVDG 1033
D +++IK +V ++ G A +I + KT SGKI R L++ + G
Sbjct: 579 SWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMR-RILRKILAG 637
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 92/423 (21%), Positives = 163/423 (38%), Gaps = 87/423 (20%)
Query: 631 ESQPD-----DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQ 685
E QP+ D F+ +TSGSTG KGV+ T GG + Y +T+ + + P
Sbjct: 247 EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL--------VYAATTFKYVFDYHPG 298
Query: 686 -----YHDMGLIGG----LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPN 736
D+G + G L+ + G+T ++F + P + + K H
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDK----HQVNIL 354
Query: 737 FAFELMVRRLESSKDK-VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP 795
+ +R L + DK + D SS++ L A EP+ + + + G
Sbjct: 355 YTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWY---WKKIG-------- 403
Query: 796 GYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPD-VDIRI---------VNPET 845
E C P++ W G++ P ++++ V P
Sbjct: 404 ----KEKC-----------PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 846 SEEIGEP---GKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR 900
+ G P EG + I+ P +G E + T+ + +N Y R
Sbjct: 449 VDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN----MYFSGDGARR 504
Query: 901 IIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGIS 960
DG ++ITGR+ D++ V+G + +A++E + H + AV+G+P + KG +
Sbjct: 505 DEDGYYWITGRVDDVLNVSGHRLGTAEIESAL---VAHPKIAEAAVVGIPHAI---KGQA 558
Query: 961 VSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGK 1020
+ + G+ ++ ++ V +E G L ++ KT SGK
Sbjct: 559 I---------YAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGK 609
Query: 1021 IKR 1023
I R
Sbjct: 610 IMR 612
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 91/423 (21%), Positives = 162/423 (38%), Gaps = 87/423 (20%)
Query: 631 ESQPD-----DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQ 685
E QP+ D F+ +TSGSTG KGV+ T GG + Y +T+ + + P
Sbjct: 247 EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL--------VYAATTFKYVFDYHPG 298
Query: 686 -----YHDMGLIGG----LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPN 736
D+G + G L+ + G+T ++F + P + + K H
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDK----HQVNIL 354
Query: 737 FAFELMVRRLESSKDK-VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP 795
+ +R L + DK + D SS++ L EP+ + + + G
Sbjct: 355 YTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYW---KKIG-------- 403
Query: 796 GYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPD-VDIRI---------VNPET 845
E C P++ W G++ P ++++ V P
Sbjct: 404 ----KEKC-----------PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 846 SEEIGEP---GKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR 900
+ G P EG + I+ P +G E + T+ + +N Y R
Sbjct: 449 VDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN----MYFSGDGARR 504
Query: 901 IIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGIS 960
DG ++ITGR+ D++ V+G + +A++E + H + AV+G+P + KG +
Sbjct: 505 DEDGYYWITGRVDDVLNVSGHRLGTAEIESAL---VAHPKIAEAAVVGIPHAI---KGQA 558
Query: 961 VSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGK 1020
+ + G+ ++ ++ V +E G L ++ KT SGK
Sbjct: 559 I---------YAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGK 609
Query: 1021 IKR 1023
I R
Sbjct: 610 IMR 612
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa
Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa
Bound
Length = 652
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 91/423 (21%), Positives = 162/423 (38%), Gaps = 87/423 (20%)
Query: 631 ESQPD-----DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQ 685
E QP+ D F+ +TSGSTG KGV+ T GG + Y +T+ + + P
Sbjct: 247 EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL--------VYAATTFKYVFDYHPG 298
Query: 686 -----YHDMGLIGG----LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPN 736
D+G + G L+ + G+T ++F + P + + K H
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDK----HQVNIL 354
Query: 737 FAFELMVRRLESSKDK-VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP 795
+ +R L + DK + D SS++ L EP+ + + + G
Sbjct: 355 YTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY---WKKIG-------- 403
Query: 796 GYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPD-VDIRI---------VNPET 845
E C P++ W G++ P ++++ V P
Sbjct: 404 ----KEKC-----------PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 846 SEEIGEP---GKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR 900
+ G P EG + I+ P +G E + T+ + +N Y R
Sbjct: 449 VDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN----MYFSGDGARR 504
Query: 901 IIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGIS 960
DG ++ITGR+ D++ V+G + +A++E + H + AV+G+P + KG +
Sbjct: 505 DEDGYYWITGRVDDVLNVSGHRLGTAEIESAL---VAHPKIAEAAVVGIPHAI---KGQA 558
Query: 961 VSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGK 1020
+ + G+ ++ ++ V +E G L ++ KT SGK
Sbjct: 559 I---------YAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGK 609
Query: 1021 IKR 1023
I R
Sbjct: 610 IMR 612
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 91/423 (21%), Positives = 162/423 (38%), Gaps = 87/423 (20%)
Query: 631 ESQPD-----DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQ 685
E QP+ D F+ +TSGSTG KGV+ T GG + Y +T+ + + P
Sbjct: 247 EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL--------VYAATTFKYVFDYHPG 298
Query: 686 -----YHDMGLIGG----LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPN 736
D+G + G L+ + G+T ++F + P + + K H
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDK----HQVNIL 354
Query: 737 FAFELMVRRLESSKDK-VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP 795
+ +R L + DK + D SS++ L EP+ + + + G
Sbjct: 355 YTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYW---KKIG-------- 403
Query: 796 GYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPD-VDIRI---------VNPET 845
E C P++ W G++ P ++++ V P
Sbjct: 404 ----KEKC-----------PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 846 SEEIGEP---GKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR 900
+ G P EG + I+ P +G E + T+ + +N Y R
Sbjct: 449 VDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN----MYFSGDGARR 504
Query: 901 IIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGIS 960
DG ++ITGR+ D++ V+G + +A++E + H + AV+G+P + KG +
Sbjct: 505 DEDGYYWITGRVDDVLNVSGHRLGTAEIESAL---VAHPKIAEAAVVGIPHAI---KGQA 558
Query: 961 VSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGK 1020
+ + G+ ++ ++ V +E G L ++ KT SGK
Sbjct: 559 I---------YAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGK 609
Query: 1021 IKR 1023
I R
Sbjct: 610 IMR 612
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 91/423 (21%), Positives = 162/423 (38%), Gaps = 87/423 (20%)
Query: 631 ESQPD-----DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQ 685
E QP+ D F+ +TSGSTG KGV+ T GG + Y +T+ + + P
Sbjct: 247 EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL--------VYAATTFKYVFDYHPG 298
Query: 686 -----YHDMGLIGG----LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPN 736
D+G + G L+ + G+T ++F + P + + K H
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDK----HQVNIL 354
Query: 737 FAFELMVRRLESSKDK-VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP 795
+ +R L + DK + D SS++ L EP+ + + + G
Sbjct: 355 YTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY---WKKIG-------- 403
Query: 796 GYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPD-VDIRI---------VNPET 845
E C P++ W G++ P ++++ V P
Sbjct: 404 ----KEKC-----------PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 846 SEEIGEP---GKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR 900
+ G P EG + I+ P +G E + T+ + +N Y R
Sbjct: 449 VDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN----MYFSGDGARR 504
Query: 901 IIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGIS 960
DG ++ITGR+ D++ V+G + +A++E + H + AV+G+P + KG +
Sbjct: 505 DEDGYYWITGRVDDVLNVSGHRLGTAEIESAL---VAHPKIAEAAVVGIPHAI---KGQA 558
Query: 961 VSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGK 1020
+ + G+ ++ ++ V +E G L ++ KT SGK
Sbjct: 559 I---------YAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGK 609
Query: 1021 IKR 1023
I R
Sbjct: 610 IMR 612
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 91/423 (21%), Positives = 162/423 (38%), Gaps = 87/423 (20%)
Query: 631 ESQPD-----DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQ 685
E QP+ D F+ +TSGSTG KGV+ T GG + Y +T+ + + P
Sbjct: 247 EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL--------VYAATTFKYVFDYHPG 298
Query: 686 -----YHDMGLIGG----LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPN 736
D+G + G L+ + G+T ++F + P + + K H
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDK----HQVNIL 354
Query: 737 FAFELMVRRLESSKDK-VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP 795
+ +R L + DK + D SS++ L EP+ + + + G
Sbjct: 355 YTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY---WKKIG-------- 403
Query: 796 GYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPD-VDIRI---------VNPET 845
E C P++ W G++ P ++++ V P
Sbjct: 404 ----KEKC-----------PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 846 SEEIGEP---GKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR 900
+ G P EG + I+ P +G E + T+ + +N Y R
Sbjct: 449 VDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN----MYFSGDGARR 504
Query: 901 IIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGIS 960
DG ++ITGR+ D++ V+G + +A++E + H + AV+G+P + KG +
Sbjct: 505 DEDGYYWITGRVDDVLNVSGHRLGTAEIESAL---VAHPKIAEAAVVGIPHAI---KGQA 558
Query: 961 VSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGK 1020
+ + G+ ++ ++ V +E G L ++ KT SGK
Sbjct: 559 I---------YAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGK 609
Query: 1021 IKR 1023
I R
Sbjct: 610 IMR 612
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 102/478 (21%), Positives = 187/478 (39%), Gaps = 68/478 (14%)
Query: 502 QSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMR-------AK 554
Q +Y EL+ A +A L R+ IKPG+ L+ + FF ++ A
Sbjct: 50 QLSYRELNQAADNLACSL---RRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLAL 106
Query: 555 XXXXXXXXXXXXQRGGQALLKIENISKSCGAVAILST-IGYHSAVRVGSWPNLPWLHTDS 613
+ ALL + L+T + HS++RV N H
Sbjct: 107 FSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHN-- 164
Query: 614 WVKNSKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKS 673
++++ N AE+ T S D++ + Q + G+TG K + TH ++V+ + +
Sbjct: 165 -LQDAINHPAEDFTA-TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQF 222
Query: 674 TSKTVLVSWLPQYHD--MGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATH 731
T +T + +P H+ M G L + GG+ + P + PL+ K++
Sbjct: 223 TQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLI-----EKHQVNV 277
Query: 732 SAGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRF-----VELTRPF 786
+A A L ++ L + + + L+S+K L V + T R +L + F
Sbjct: 278 TALVPPAVSLWLQALIEGESRAQ---LASLKLLQVGGARLSATLAARIPAEIGCQLQQVF 334
Query: 787 GLSQGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETS 846
G+++G++ Y ++ I+ QG C PD ++ + + E
Sbjct: 335 GMAEGLV--NYTRLDDSA----------EKIIHTQGYPMC-------PDDEVWVADAE-- 373
Query: 847 EEIGEPGKEGEV---WISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRI-I 902
G P +GEV P GY+ + + F + +GDL I
Sbjct: 374 ---GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAF-------DANGFYCSGDLISIDP 423
Query: 903 DGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGIS 960
+G + GR KD I G + + ++E + H A++ + +E++ K +
Sbjct: 424 EGYITVQGREKDQINRGGEKIAAEEIENLL---LRHPAVIYAALVSMEDELMGEKSCA 478
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/423 (21%), Positives = 161/423 (38%), Gaps = 87/423 (20%)
Query: 631 ESQPD-----DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQ 685
E QP+ D F+ +TSGSTG KGV+ T GG + Y +T+ + + P
Sbjct: 247 EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL--------VYAATTFKYVFDYHPG 298
Query: 686 -----YHDMGLIGG----LFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPN 736
D+G + G L+ + G+T ++F + P + + K H
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDK----HQVNIL 354
Query: 737 FAFELMVRRLESSKDK-VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAP 795
+ +R L + DK + D SS++ L EP+ + + + G
Sbjct: 355 YTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY---WKKIG-------- 403
Query: 796 GYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPD-VDIRI---------VNPET 845
E C P++ W G++ P ++++ V P
Sbjct: 404 ----KEKC-----------PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPAL 448
Query: 846 SEEIGEP---GKEGEVWISS--PSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR 900
+ G P EG + I+ P +G E + T+ + +N Y R
Sbjct: 449 VDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN----MYFSGDGARR 504
Query: 901 IIDGKFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGIS 960
DG ++ITGR+ D++ V+G + +A++E + H + AV+G+P + KG +
Sbjct: 505 DEDGYYWITGRVDDVLNVSGHRLGTAEIESAL---VAHPKIAEAAVVGIPHAI---KGQA 558
Query: 961 VSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGK 1020
+ + G+ ++ ++ V +E G L ++ KT SG
Sbjct: 559 I---------YAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGA 609
Query: 1021 IKR 1023
I R
Sbjct: 610 IMR 612
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 142/334 (42%), Gaps = 42/334 (12%)
Query: 638 CFLQFTSGSTGDAKGVMITHGGLI-HNVKL-MRKRYKSTSKTVLVSWLPQYHDMGLIGGL 695
C + +T+G+TG KGV+ +H L+ H++ + + K V++ +P +H +
Sbjct: 179 CGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFH-VNAWCLP 237
Query: 696 FTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDKVRS 755
+ A + G+ +L P +P +E T +AG + + LES+ +
Sbjct: 238 YAATLVGAKQVLPGPRL---DPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR--- 291
Query: 756 FDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGV-MAPGYGLAENCVFVSCAYGQGK 814
L +++ L+V ++ + RF + GV + GYGL E V + +
Sbjct: 292 --LKTLRRLVVGGSAAPRSLIARFERM--------GVEVRQGYGLTETSPVVVQNFVKSH 341
Query: 815 PIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP----GKE-GEVWISSPSAGIGY 869
L + ++ + + I +V ++E G P GK GEV + P GY
Sbjct: 342 LESLSEEEKLTL----KAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGY 397
Query: 870 WGREELSQITFRNELQNNRGRKYTRTGDLGRIID--GKFFITGRIKDLIIVAGRNVYSAD 927
+G EE ++ + + RTGD+ + D G I R+KDLI G + S D
Sbjct: 398 YGNEEATRSALTPD-------GFFRTGDIA-VWDEEGYVEIKDRLKDLIKSGGEWISSVD 449
Query: 928 VEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISV 961
+E + H + AV+ +P + ++V
Sbjct: 450 LENALMG---HPKVKEAAVVAIPHPKWQERPLAV 480
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 129/320 (40%), Gaps = 33/320 (10%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIH--NVKLMRKRYKSTSKTVLVSWLPQYHDMGLI 692
DD ++ FTSG+TG KGV I+H L+ N + + + +++ P D+ ++
Sbjct: 145 DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM 204
Query: 693 GGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYR-ATHSAGPNFAFELMVRRLESSKD 751
T +GG+ L P + + T+++ ++ P+FA M+ D
Sbjct: 205 YWAPTLALGGTLFAL--PKELVADFKQLFTTIAQLPVGIWTSTPSFADMAML------SD 256
Query: 752 KVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYG 811
+ ++ E + +T ++ E + YG E V +S
Sbjct: 257 DFCQAKMPALTHFYFDGEELTVSTARKLFE-----RFPSAKIINAYGPTEATVALSAIEI 311
Query: 812 QGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWG 871
+ ++D R+ GY PD I++ E +E+ G++GE+ ++ P+ GY
Sbjct: 312 TRE--MVDNYTRLPIGY---PKPDSPTYIID-EDGKELSS-GEQGEIIVTGPAVSKGYLN 364
Query: 872 REELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSADVEK 930
E + F +G+ TGD+G + D GR+ I AG + DV +
Sbjct: 365 NPEKTAEAFF----TFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQ 420
Query: 931 TVESSTEHIRPGCCAVIGVP 950
+ S P + + VP
Sbjct: 421 QLNQS-----PMVASAVAVP 435
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 93/415 (22%), Positives = 155/415 (37%), Gaps = 64/415 (15%)
Query: 504 TYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKXXXXXXXXX 563
TY +++A A+R A +LT+ I GDRV L+ ++F F+G +
Sbjct: 31 TYAQMNALANRCA-DVLTALG--IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 87
Query: 564 XXXQRGGQALLKIENISKSCGAVAIL---STIGYHSAVRVGSWPN---LPWLHTDSWVKN 617
A ++ I G+ ++ + A+R + P W+ DS +
Sbjct: 88 L-------AAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAER 140
Query: 618 SKNLLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKT 677
++ A+ E DD F+ +TSG+TG KGV+ TH + +
Sbjct: 141 LRSAAADEPA--VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRD 198
Query: 678 VLVSWLPQYHDMGLIGGLFTAMVGGSTAILFSPLTFIKNPL-----LWLETMSKYRATHS 732
L+ LP +H L +F+AM G +T I P +W + +
Sbjct: 199 RLLLPLPMFHVAALTTVIFSAMRG---------VTLISMPQFDATKVWSLIVEERVCIGG 249
Query: 733 AGPNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGV 792
A P M + E ++ D ++ + P+ + +K + + + QG
Sbjct: 250 AVPAI-LNFMRQVPEFAE-----LDAPDFRYFITGGAPMPEALIKIYA--AKNIEVVQG- 300
Query: 793 MAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP 852
Y L E+C G ++L G + D+ + + I E
Sbjct: 301 ----YALTESC--------GGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV--IREH 346
Query: 853 GKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFF 907
G EGEV I S YW R E ++ F N + RTGD+G I D +
Sbjct: 347 G-EGEVVIKSDILLKEYWNRPEATRDAFDN--------GWFRTGDIGEIDDEGYL 392
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 123/326 (37%), Gaps = 62/326 (19%)
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694
DD+ + FTSG+TG K V T + ++ T +S LP YH GL
Sbjct: 163 DDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL-SV 221
Query: 695 LFTAMVGGSTAILFSP------LTFIKNPLLWLETMSKYRATH-SAGPNFAFELMVRRLE 747
L A++ G T + LT IKN R TH S P LM + L
Sbjct: 222 LLRAVIEGFTVRIVDKFNAEQILTMIKNE----------RITHISLVPQTLNWLMQQGLH 271
Query: 748 SSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVS 807
+ ++ +++ + T ++ ++ P S +G+ E C
Sbjct: 272 EPYN---------LQKILLGGAKLSATMIETALQYNLPIYNS-------FGMTETC---- 311
Query: 808 CAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGI 867
+ P +L + V +VD++I NP GE+ I +
Sbjct: 312 SQFLTATPEMLHARPDT----VGMPSANVDVKIKNPNKE-------GHGELMIKGANVMN 360
Query: 868 GYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DGKFFITGRIKDLIIVAGRNVYSA 926
GY +L+ TF N Y TGD+ I +G I R KDLII G N+Y
Sbjct: 361 GYLYPTDLTG-TFEN--------GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPY 411
Query: 927 DVEKTVESSTEHIRPGCCAVIGVPEE 952
+E TV I C +G P++
Sbjct: 412 QIE-TVAKQFPGISDAVC--VGHPDD 434
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 48.1 bits (113), Expect = 6e-05, Method: Composition-based stats.
Identities = 84/335 (25%), Positives = 127/335 (37%), Gaps = 56/335 (16%)
Query: 636 DLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGGL 695
D + +TSG+TG KG +I L + + ++ T + VLV LP +H GL+ G+
Sbjct: 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGI 215
Query: 696 FTAM-VGGSTAIL--FSP------LTFIKNPLLWLETM-SKYRATHSAGPNFAFELMVRR 745
+ GGS L FS L L + TM + T A P A L R
Sbjct: 216 LGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLPADPELAKALAGAR 275
Query: 746 LESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVF 805
L S S + E + T +R +E YG+ E +
Sbjct: 276 LLVS---------GSAALPVHDHERIAAATGRRVIER--------------YGMTETLMN 312
Query: 806 VSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKE-GEVWISSPS 864
S G+P G V P V++R+V + + G+ GE+ + P+
Sbjct: 313 TS-VRADGEPR---------AGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPN 362
Query: 865 AGIGYWGREELSQITFRNELQNNRGRKYTRTGDLG-RIIDGKFFITGR-IKDLIIVAGRN 922
Y R + + F + + RTGD+ R DG I GR DLI G
Sbjct: 363 LFTEYLNRPDATAAAFTED-------GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYK 415
Query: 923 VYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTK 957
+ + ++E + EH AV G P+ L +
Sbjct: 416 IGAGEIENAL---LEHPEVREAAVTGEPDPDLGER 447
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 124/536 (23%), Positives = 199/536 (37%), Gaps = 85/536 (15%)
Query: 501 NQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKXXXXXX 560
++ TY L+ A+R+AH+L+ + PG V + G D V A ++A
Sbjct: 99 DELTYGALNERANRLAHRLVGLG---VAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155
Query: 561 XXXXXXQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620
+R +L + GA +L T S G+ T +V++
Sbjct: 156 DPQFPVERLALSL-------EDTGA-PLLVTSRPLSGRLTGT--------TTLYVEDEAA 199
Query: 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLV 680
A T P+D+ + FTSGSTG KGVM H L L + V +
Sbjct: 200 SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALT-GTYLGQDYAGFGPDEVFL 258
Query: 681 SWLPQYHD-MGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAF 739
P D GL LF A++ G+ +L S +PL E ++++ T F
Sbjct: 259 QCSPVSWDAFGL--ELFGALLFGARCVLQSGQN--PDPLEIGELVARHGVTMLQLSASLF 314
Query: 740 ELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGL 799
+V + + + VR + + EP +V + R + + GYG
Sbjct: 315 NFLVDEVPEAFEGVR--------YAITGGEP---ASVPHVAKARRDHPALR--LGNGYGP 361
Query: 800 AENCVFVSC-------AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP 852
AE+ F + G PI + G+ YV +D + P +
Sbjct: 362 AESMGFTTHHAVVAGDLSGTALPIGVPLAGKR--AYVLDDD-------LKPAAN------ 406
Query: 853 GKEGEVWISSPSAGIGYWGREELSQITF-RNELQNNRGRKYTRTGDLG-RIIDGKFFITG 910
G GE++++ GY R L+ F + G + RTGDL R DG G
Sbjct: 407 GALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVG 466
Query: 911 RIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVIGVPEEVLSTKGISVSD---GSDQ 967
R D + + G V +VE ++G P + + D G Q
Sbjct: 467 RADDQVKIRGFRVEPGEVE--------------ARLVGHP--AVRQAAVLAQDSRLGDKQ 510
Query: 968 VGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTTSGKIKR 1023
+ V+AE D P D E ++ V E + V+ + + +T +GK+ R
Sbjct: 511 LVAYVVAERADAPP---DAAE-LRRHVAEALPAYMVPVECVPVDELPRTPNGKLDR 562
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 133/325 (40%), Gaps = 50/325 (15%)
Query: 637 LCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR-----YKSTSKTVLVSWLPQYHDMGL 691
+ + +SGSTG KGV + H L V+ R + T ++S +P +H G+
Sbjct: 197 IALIMNSSGSTGLPKGVALPHRALA--VRFSHARDPIFGNQIAPDTAILSVVPFHHGFGM 254
Query: 692 IGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKD 751
L + G +++ F + L+L ++ Y+ + L+V L S
Sbjct: 255 FTTLGYLISGFRVVLMYR---FEEE--LFLRSLQDYKIQSA--------LLVPTLFSFLA 301
Query: 752 K---VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSC 808
K + +DLS++ + P+ + + + G+ QG YGL E
Sbjct: 302 KSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQG-----YGLTETT----- 351
Query: 809 AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868
I++ +G G V + P + ++V+ +T + +G + GE+ + P G
Sbjct: 352 -----SAILITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV-NQRGELSVRGPMIMSG 405
Query: 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGR-IIDGKFFITGRIKDLIIVAGRNVYSAD 927
Y E + N L + G + +GD+ D FFI R+K LI G V A+
Sbjct: 406 YVNNPEAT-----NALIDKDG--WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAE 458
Query: 928 VEKTVESSTEHIRPGCCAVIGVPEE 952
+E + +H V G+P++
Sbjct: 459 LESIL---LQHPNIFDAGVAGLPDD 480
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Query: 15 HPCLP--------VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
+PCLP + +I ++G GP+ +S A LA+LGY ++T+ EK VGG+
Sbjct: 173 NPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL 226
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Query: 15 HPCLP--------VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
+PCLP + +I ++G GP+ +S A LA+LGY ++T+ EK VGG+
Sbjct: 173 NPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL 226
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 114/301 (37%), Gaps = 36/301 (11%)
Query: 632 SQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGL 691
S+ DL ++ +TSG+TG+ KG M+ H G I N+K+ + + ++ +
Sbjct: 179 SKSTDLAYVIYTSGTTGNPKGTMLEHKG-ISNLKVFFENSLNVTEKDRIGQFASISFDAS 237
Query: 692 IGGLFTAMVGGSTAILFSPLTFIKNPLLWLETM--SKYRATHSAGPNFAFELMVRRLESS 749
+ +F A++ G++ L+ L N + E K + P + L
Sbjct: 238 VWEMFMALLTGAS--LYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL-------- 287
Query: 750 KDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCA 809
D R + ++ A P K V +G ++ + A V
Sbjct: 288 -DPERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTIC-----ATTWVATKET 341
Query: 810 YGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGY 869
G PI G QN I IV+ ++ G+ GE+ I GY
Sbjct: 342 IGHSVPI----------GAPIQN---TQIYIVDENL--QLKSVGEAGELCIGGEGLARGY 386
Query: 870 WGREELSQITFRNELQNNRGRKYTRTGDLGR-IIDGKFFITGRIKDLIIVAGRNVYSADV 928
W R EL+ F + G K +TGD R + DG GRI + + + G V +V
Sbjct: 387 WKRPELTSQKFVDN-PFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEV 445
Query: 929 E 929
E
Sbjct: 446 E 446
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 122/298 (40%), Gaps = 50/298 (16%)
Query: 643 TSGSTGDAKGVMITHGGLIHNVKLMRKRY---KSTSKTVLVSWLPQYHDMGLIGGLFTAM 699
+SGSTG KGV +TH + R + T +++ +P +H G+ L
Sbjct: 232 SSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTLGYLT 291
Query: 700 VGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDK---VRSF 756
G +++ F + L+L ++ Y+ + L+V L S K V +
Sbjct: 292 CGFRIVLMYR---FEEE--LFLRSLQDYKIQSA--------LLVPTLFSFFAKSTLVDKY 338
Query: 757 DLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQGKPI 816
DLS++ + P+ + + + + G+ QG YGL E I
Sbjct: 339 DLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQG-----YGLTETT----------SAI 383
Query: 817 ILDWQGRV----CCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGR 872
I+ +GR CG V P +IV+ +T + +G + GE+ + P GY
Sbjct: 384 IITPRGRDDKPGACGKVV---PFFSAKIVDLDTGKTLGV-NQRGELCVKGPMIMKGYVNN 439
Query: 873 EELSQITFRNELQNNRGRKYTRTGDLGRI-IDGKFFITGRIKDLIIVAGRNVYSADVE 929
E + + L + G + +GD+ DG FFI R+K LI G V A++E
Sbjct: 440 PEAT-----SALIDKDG--WLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELE 490
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 132/325 (40%), Gaps = 50/325 (15%)
Query: 637 LCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR-----YKSTSKTVLVSWLPQYHDMGL 691
+ + +SGSTG KGV + H V+ R + T ++S +P +H G+
Sbjct: 192 IALIMNSSGSTGLPKGVALPHRTAC--VRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM 249
Query: 692 IGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKD 751
L + G +++ F + L+L ++ Y+ + L+V L S
Sbjct: 250 FTTLGYLICGFRVVLMYR---FEEE--LFLRSLQDYKIQSA--------LLVPTLFSFFA 296
Query: 752 K---VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSC 808
K + +DLS++ + P+ + + + G+ QG YGL E
Sbjct: 297 KSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQG-----YGLTETT----- 346
Query: 809 AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868
I++ +G G V + P + ++V+ +T + +G + GE+ + P G
Sbjct: 347 -----SAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV-NQRGELCVRGPMIMSG 400
Query: 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGR-IIDGKFFITGRIKDLIIVAGRNVYSAD 927
Y E + N L + G + +GD+ D FFI R+K LI G V A+
Sbjct: 401 YVNNPEAT-----NALIDKDG--WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 453
Query: 928 VEKTVESSTEHIRPGCCAVIGVPEE 952
+E + +H V G+P++
Sbjct: 454 LESIL---LQHPNIFDAGVAGLPDD 475
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 132/325 (40%), Gaps = 50/325 (15%)
Query: 637 LCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR-----YKSTSKTVLVSWLPQYHDMGL 691
+ + +SGSTG KGV + H V+ R + T ++S +P +H G+
Sbjct: 197 IALIMNSSGSTGLPKGVALPHRTAC--VRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM 254
Query: 692 IGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKD 751
L + G +++ F + L+L ++ Y+ + L+V L S
Sbjct: 255 FTTLGYLICGFRVVLMYR---FEEE--LFLRSLQDYKIQSA--------LLVPTLFSFFA 301
Query: 752 K---VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSC 808
K + +DLS++ + P+ + + + G+ QG YGL E
Sbjct: 302 KSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQG-----YGLTETT----- 351
Query: 809 AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868
I++ +G G V + P + ++V+ +T + +G + GE+ + P G
Sbjct: 352 -----SAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV-NQRGELCVRGPMIMSG 405
Query: 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGR-IIDGKFFITGRIKDLIIVAGRNVYSAD 927
Y E + N L + G + +GD+ D FFI R+K LI G V A+
Sbjct: 406 YVNNPEAT-----NALIDKDG--WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 458
Query: 928 VEKTVESSTEHIRPGCCAVIGVPEE 952
+E + +H V G+P++
Sbjct: 459 LESIL---LQHPNIFDAGVAGLPDD 480
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 132/325 (40%), Gaps = 50/325 (15%)
Query: 637 LCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR-----YKSTSKTVLVSWLPQYHDMGL 691
+ + +SGSTG KGV + H V+ R + T ++S +P +H G+
Sbjct: 192 IALIMNSSGSTGLPKGVALPHRTAC--VRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM 249
Query: 692 IGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKD 751
L + G +++ F + L+L ++ Y+ + L+V L S
Sbjct: 250 FTTLGYLICGFRVVLMYR---FEEE--LFLRSLQDYKIQSA--------LLVPTLFSFFA 296
Query: 752 K---VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSC 808
K + +DLS++ + P+ + + + G+ QG YGL E
Sbjct: 297 KSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQG-----YGLTETT----- 346
Query: 809 AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIG 868
I++ +G G V + P + ++V+ +T + +G + GE+ + P G
Sbjct: 347 -----SAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV-NQRGELCVRGPMIMSG 400
Query: 869 YWGREELSQITFRNELQNNRGRKYTRTGDLGR-IIDGKFFITGRIKDLIIVAGRNVYSAD 927
Y E + N L + G + +GD+ D FFI R+K LI G V A+
Sbjct: 401 YVNNPEAT-----NALIDKDG--WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 453
Query: 928 VEKTVESSTEHIRPGCCAVIGVPEE 952
+E + +H V G+P++
Sbjct: 454 LESIL---LQHPNIFDAGVAGLPDD 475
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 17 CLPVNTRIGIVGGGPSGLSTAYA-LAKLGYRNVTLLEKYHTVGGM 60
CLP +I I+G GPSGL TA A LA+ + VTL E+ + GG+
Sbjct: 2 CLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV 46
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 17 CLPVNTRIGIVGGGPSGLSTAYA-LAKLGYRNVTLLEKYHTVGGM 60
CLP +I I+G GPSGL TA A LA+ + VTL E+ + GG+
Sbjct: 4 CLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV 48
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 129/327 (39%), Gaps = 54/327 (16%)
Query: 631 ESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKR--YKSTSKTVLVSWLPQYHD 688
+ +P F+ +TSG+TG K +I V M + + V++ +P YH
Sbjct: 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208
Query: 689 MGLIGGLFTAMVGGSTAIL---FSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRR 745
+G L A+ T ++ F P+ ++ L+ E ++ AT + A
Sbjct: 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQ--LVQQEQVTSLFATPTHLDALAAAAAHAG 266
Query: 746 LESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAE--NC 803
D +R + E V Q G GYG E N
Sbjct: 267 SSLKLDSLRHVTFAGATMPDAVLETVHQHL--------------PGEKVNGYGTTEAMNS 312
Query: 804 VFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETS-EEIGEPGKEGEVWIS- 861
+++ +P + G+ ++RIV +EI G+EGE+ ++
Sbjct: 313 LYMR------QP---KTGTEMAPGFFS------EVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 862 SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR-IIDGKFFITGRIKDLIIVAG 920
S SA +GY + + + +LQ+ + RT D+ +G I GR+ D+II G
Sbjct: 358 SDSAFVGYLNQPQATA----EKLQDG----WYRTSDVAVWTPEGTVRILGRVDDMIISGG 409
Query: 921 RNVYSADVEKTVESSTEHIRPGCCAVI 947
N++ +++E+ + ++ PG V+
Sbjct: 410 ENIHPSEIERVLGTA-----PGVTEVV 431
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 847 EEIGEPGKEGEVWIS-SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR-IIDG 904
+EI G+EGE+ ++ S SA +GY + E + +LQ+ + RT D+ +G
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPEATA----EKLQDG----WYRTSDVAVWTPEG 393
Query: 905 KFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVI 947
I GR+ D+II G N++ +++E+ + ++ PG V+
Sbjct: 394 TVRILGRVDDMIISGGENIHPSEIERVLGTA-----PGVTEVV 431
>pdb|2ISA|A Chain A, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|B Chain B, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|C Chain C, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|D Chain D, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|E Chain E, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|F Chain F, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|G Chain G, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|H Chain H, Crystal Structure Of Vibrio Salmonicida Catalase
Length = 483
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 40/210 (19%)
Query: 1840 SYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYDESIGEDSGEVEPRGIL---PPETGAIP 1896
+Y MH + + F +D + +VKF V +GI E G +
Sbjct: 186 TYRHMHGFGSHTFSFINSDNERYWVKFHF-------------VSQQGIKNLSDAEAGELV 232
Query: 1897 RDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYP 1956
+D ++ L + + ++ ++QI P + D TK W +YP
Sbjct: 233 GNDRESHQRDLLDS-----IDNQDFPKWTLKVQIMPEADAATVPYNPFDLTKVWPHKDYP 287
Query: 1957 YIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQ 2014
I+VGE +++N E E+ FNP +V+P + S + GR Y Q
Sbjct: 288 LIEVGEFELNRNPQNYFAEVEQAAFNP------ANVVPGISFSPDKML-QGRLFAYGDAQ 340
Query: 2015 HLRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044
+R+ + + V+ CP+
Sbjct: 341 ----------RYRLGVNHQHIPVNAPRCPV 360
>pdb|1H6N|A Chain A, Formation Of A Tyrosyl Radical Intermediate In Proteus
Mirabilis Catalase By Directed Mutagenesis And
Consequences For Nucleotide Reactivity
Length = 484
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 38/209 (18%)
Query: 1840 SYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYD--ESIGEDSGEVEPRGILPPETGAIPR 1897
SY +H Y + F D + +VKF R +++ +D E + +
Sbjct: 187 SYRFVHGYGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEA-----------LVGK 235
Query: 1898 DDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPY 1957
D ++ LF A E R P R+ Q+QI P + + D TK W A+YP
Sbjct: 236 DRESSQRDLFEAIE---RGDYP---RWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPL 289
Query: 1958 IDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQH 2015
+DVG +++N + E+ F+P +++P + S + GR Y
Sbjct: 290 MDVGYFELNRNPDNYFSDVEQAAFSP------ANIVPGISFSPDKML-QGRLFSYGDAH- 341
Query: 2016 LRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044
+R+ + + V+ CP
Sbjct: 342 ---------RYRLGVNHHQIPVNAPKCPF 361
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 847 EEIGEPGKEGEVWIS-SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR-IIDG 904
+EI G+EGE+ ++ S SA +GY + + + +LQ+ + RT D+ +G
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATA----EKLQDG----WYRTSDVAVWTPEG 393
Query: 905 KFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVI 947
I GR+ D+II G N++ +++E+ + ++ PG V+
Sbjct: 394 TVRILGRVDDMIISGGENIHPSEIERVLGTA-----PGVTEVV 431
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 847 EEIGEPGKEGEVWIS-SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR-IIDG 904
+EI G+EGE+ ++ S SA +GY + + + +LQ+ + RT D+ +G
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATA----EKLQDG----WYRTSDVAVWTPEG 393
Query: 905 KFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVI 947
I GR+ D+II G N++ +++E+ + ++ PG V+
Sbjct: 394 TVRILGRVDDMIISGGENIHPSEIERVLGTA-----PGVTEVV 431
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 847 EEIGEPGKEGEVWIS-SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGR-IIDG 904
+EI G+EGE+ ++ S SA +GY + + + +LQ+ + RT D+ +G
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATA----EKLQDG----WYRTSDVAVWTPEG 393
Query: 905 KFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVI 947
I GR+ D+II G N++ +++E+ + ++ PG V+
Sbjct: 394 TVRILGRVPDMIISGGENIHPSEIERVLGTA-----PGVTEVV 431
>pdb|3R3R|A Chain A, Structure Of The Yrda Ferripyochelin Binding Protein From
Salmonella Enterica
Length = 187
Score = 38.9 bits (89), Expect = 0.034, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 1630 VIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGS 1670
++G S+VL +++ DV++GA S+ P H L+ G +Y+GS
Sbjct: 108 LVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGS 148
>pdb|3HB6|A Chain A, Inactive Mutant H54f Of Proteus Mirabilis Catalase
Length = 484
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 80/209 (38%), Gaps = 38/209 (18%)
Query: 1840 SYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYD--ESIGEDSGEVEPRGILPPETGAIPR 1897
SY +H + + F D + +VKF R +++ +D E + +
Sbjct: 187 SYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEA-----------LVGK 235
Query: 1898 DDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPY 1957
D ++ LF A E R P R+ Q+QI P + + D TK W A+YP
Sbjct: 236 DRESSQRDLFEAIE---RGDYP---RWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPL 289
Query: 1958 IDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQH 2015
+DVG +++N + E+ F+P +++P + S + GR Y
Sbjct: 290 MDVGYFELNRNPDNYFSDVEQAAFSP------ANIVPGISFSPDKML-QGRLFSYGDAHR 342
Query: 2016 LRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044
R G + + V+ CP
Sbjct: 343 YRLG----------VNHHQIPVNAPKCPF 361
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 38.1 bits (87), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
+I I+G GP+GL A L +LGY+N L E T GG+
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGL 48
>pdb|1M85|A Chain A, Structure Of Proteus Mirabilis Catalase For The Native Form
pdb|1MQF|A Chain A, Compound I From Proteus Mirabilis Catalase
pdb|1NM0|A Chain A, Proteus Mirabilis Catalase In Complex With Formiate
pdb|2CAG|A Chain A, Catalase Compound Ii
pdb|2CAH|A Chain A, Structure Of Proteus Mirabilis Pr Catalase For The Native
Form (e- Fe(iii)) Complexed With Nadph
Length = 484
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 38/209 (18%)
Query: 1840 SYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYD--ESIGEDSGEVEPRGILPPETGAIPR 1897
SY +H + + F D + +VKF R +++ +D E + +
Sbjct: 187 SYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEA-----------LVGK 235
Query: 1898 DDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPY 1957
D ++ LF A E R P R+ Q+QI P + + D TK W A+YP
Sbjct: 236 DRESSQRDLFEAIE---RGDYP---RWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPL 289
Query: 1958 IDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQH 2015
+DVG +++N + E+ F+P +++P + S + GR Y
Sbjct: 290 MDVGYFELNRNPDNYFSDVEQAAFSP------ANIVPGISFSPDKML-QGRLFSYGDAH- 341
Query: 2016 LRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044
+R+ + + V+ CP
Sbjct: 342 ---------RYRLGVNHHQIPVNAPKCPF 361
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 37.7 bits (86), Expect = 0.069, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 847 EEIGEPGKEGEVWIS-SPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGDLGRII-DG 904
+EI G+EGE+ ++ S SA +GY + + + +LQ+ + RT D+ +G
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATA----EKLQDG----WYRTSDVAVWTPEG 393
Query: 905 KFFITGRIKDLIIVAGRNVYSADVEKTVESSTEHIRPGCCAVI 947
I GR+ D II G N++ +++E+ + ++ PG V+
Sbjct: 394 TVRILGRVDDXIISGGENIHPSEIERVLGTA-----PGVTEVV 431
>pdb|1E93|A Chain A, High Resolution Structure And Biochemical Properties Of A
Recombinant Catalase Depleted In Iron
Length = 484
Score = 37.4 bits (85), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 19/124 (15%)
Query: 1923 RYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFN 1980
R+ Q+QI P + + D TK W A+YP +DVG +++N + E+ F+
Sbjct: 255 RWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDNYFSDVEQAAFS 314
Query: 1981 PYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQHLRNGEPLPESWRIFLEQSDVKVDLS 2040
P +++P + S + GR Y +R+ + + V+
Sbjct: 315 P------ANIVPGISFSPDKML-QGRLFSYGDAH----------RYRLGVNHHQIPVNAP 357
Query: 2041 GCPM 2044
CP
Sbjct: 358 KCPF 361
>pdb|1H7K|A Chain A, Formation Of A Tyrosyl Radical Intermediate In Proteus
Mirabilis Catalase By Directed Mutagenesis And
Consequences For Nucleotide Reactivity
Length = 483
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 38/209 (18%)
Query: 1840 SYAEMHYYSNICRLFRFTDGQEMYVKFKLRPYD--ESIGEDSGEVEPRGILPPETGAIPR 1897
SY +H + + F D + +VKF R +++ +D E + +
Sbjct: 186 SYRFVHGFGSHTYSFINKDNERFWVKFHYRCQQGIKNLMDDEAEA-----------LVGK 234
Query: 1898 DDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPY 1957
D ++ LF A E R P R+ Q+QI P + + D TK W A+YP
Sbjct: 235 DRESSQRDLFEAIE---RGDYP---RWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPL 288
Query: 1958 IDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSASIDHGRSLIYEICQH 2015
+DVG +++N + E+ F+P +++P + S + GR Y
Sbjct: 289 MDVGYFELNRNPDNYFSDVEQAAFSP------ANIVPGISFSPDKML-QGRLFSYGDAH- 340
Query: 2016 LRNGEPLPESWRIFLEQSDVKVDLSGCPM 2044
+R+ + + V+ CP
Sbjct: 341 ---------RYRLGVNHHQIPVNAPKCPF 360
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 106/506 (20%), Positives = 186/506 (36%), Gaps = 83/506 (16%)
Query: 475 LKHWGTHRITQKKT---LFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGD 531
L HW K+ W+N +G + + EL N+ + A+ L S ++ GD
Sbjct: 44 LDHWADMEKAGKRPPSPALWWVNGKGKEL-MWNFRELSENSQQAANVL--SGACGLQRGD 100
Query: 532 RVLLVYVPGLDFVDAFFGCMRAKXX---------------XXXXXXXXXXQRGGQALLKI 576
RV +V ++ GC+RA G + + ++
Sbjct: 101 RVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160
Query: 577 ENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCF--TESQP 634
+ ++ C ++ I + S D W+ N K LL E E+
Sbjct: 161 DTVASECPSLRIKLLVSEKSC--------------DGWL-NFKKLLNEASTTHHCVETGS 205
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694
+ + FTSG++G K ++ L K+ + ++ + D G I
Sbjct: 206 QEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWT----ISDTGWILN 261
Query: 695 LFTAMVG--GSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDK 752
+ +++ A F L +PL+ L+T+S Y G + +++++
Sbjct: 262 ILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------- 314
Query: 753 VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ 812
DLSS KF P Q V E P L G + E +YGQ
Sbjct: 315 ----DLSSYKF------PHLQNCVT-VGESLLPETLENWRAQTGLDIRE-------SYGQ 356
Query: 813 ---GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWIS-SPSAGIG 868
G ++ ++ GY+ D++I++ + + + PG EG++ I P IG
Sbjct: 357 TETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGN--VLPPGTEGDIGIRVKPIRPIG 414
Query: 869 YWGREELSQITFRNELQNNRGRKYTRTGDLG-RIIDGKFFITGRIKDLIIVAGRNVYSAD 927
+ + ++ N + GD G + DG F GR D+I +G + ++
Sbjct: 415 IFS----GYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSE 470
Query: 928 VEKTVESSTEHIRPGCCAVIGVPEEV 953
VE + EH AVI P+ V
Sbjct: 471 VENAL---MEHPAVVETAVISSPDPV 493
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
P++ + ++G GP G A A+LG++ V +EK T+GG C
Sbjct: 4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTV-CIEKNETLGGTC 45
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
Length = 474
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
P++ + ++G GP G A A+LG++ V +EK T+GG C
Sbjct: 4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTV-CIEKNETLGGTC 45
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 106/506 (20%), Positives = 186/506 (36%), Gaps = 83/506 (16%)
Query: 475 LKHWGTHRITQKKT---LFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVIKPGD 531
L HW K+ W+N +G + + EL N+ + A+ L S ++ GD
Sbjct: 44 LDHWADMEKAGKRPPSPALWWVNGKGKEL-MWNFRELSENSQQAANVL--SGACGLQRGD 100
Query: 532 RVLLVYVPGLDFVDAFFGCMRAKXX---------------XXXXXXXXXXQRGGQALLKI 576
RV +V ++ GC+RA G + + ++
Sbjct: 101 RVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160
Query: 577 ENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKNLLAENVVCF--TESQP 634
+ ++ C ++ I + S D W+ N K LL E E+
Sbjct: 161 DTVASECPSLRIKLLVSEKSC--------------DGWL-NFKKLLNEASTTHHCVETGS 205
Query: 635 DDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLVSWLPQYHDMGLIGG 694
+ + FTSG++G K ++ L K+ + ++ + D G I
Sbjct: 206 QEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWT----ISDTGWILN 261
Query: 695 LFTAMVG--GSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAFELMVRRLESSKDK 752
+ +++ A F L +PL+ L+T+S Y G + +++++
Sbjct: 262 ILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------- 314
Query: 753 VRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQ 812
DLSS KF P Q V E P L G + E +YGQ
Sbjct: 315 ----DLSSYKF------PHLQNCVT-VGESLLPETLENWRAQTGLDIRE-------SYGQ 356
Query: 813 ---GKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWIS-SPSAGIG 868
G ++ ++ GY+ D++I++ + + + PG EG++ I P IG
Sbjct: 357 TETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGN--VLPPGTEGDIGIRVKPIRPIG 414
Query: 869 YWGREELSQITFRNELQNNRGRKYTRTGDLG-RIIDGKFFITGRIKDLIIVAGRNVYSAD 927
+ + ++ N + GD G + DG F GR D+I +G + ++
Sbjct: 415 IFS----GYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSE 470
Query: 928 VEKTVESSTEHIRPGCCAVIGVPEEV 953
VE + EH AVI P+ V
Sbjct: 471 VENAL---MEHPAVVETAVISSPDPV 493
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 19 PVNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
P++ + ++G GP G A A+LG++ V +EK T+GG C
Sbjct: 25 PIDADVTVIGSGPGGYVAAIKAAQLGFKTV-CIEKNETLGGTC 66
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 36.6 bits (83), Expect = 0.15, Method: Composition-based stats.
Identities = 100/421 (23%), Positives = 157/421 (37%), Gaps = 62/421 (14%)
Query: 501 NQSTYEELDANASRIAHKLLTSRKPVIKPGDRVLLVYVPGLDFVDAFFGCMRAKXXXXXX 560
++ TY L+ A+R+AH+L+ + PG V + G D V A ++A
Sbjct: 99 DELTYGALNERANRLAHRLVGLG---VAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155
Query: 561 XXXXXXQRGGQALLKIENISKSCGAVAILSTIGYHSAVRVGSWPNLPWLHTDSWVKNSKN 620
+R +L + GA +L T S G+ T +V++
Sbjct: 156 DPQFPVERLALSL-------EDTGA-PLLVTSRPLSGRLTGT--------TTLYVEDEAA 199
Query: 621 LLAENVVCFTESQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMRKRYKSTSKTVLV 680
A T P+D+ + FTSGSTG KGVM H L L + V +
Sbjct: 200 SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALT-GTYLGQDYAGFGPDEVFL 258
Query: 681 SWLPQYHD-MGLIGGLFTAMVGGSTAILFSPLTFIKNPLLWLETMSKYRATHSAGPNFAF 739
P D GL LF A++ G+ +L S +PL E ++++ T F
Sbjct: 259 QCSPVSWDAFGL--ELFGALLFGARCVLQSGQN--PDPLEIGELVARHGVTMLQLSASLF 314
Query: 740 ELMVRRLESSKDKVRSFDLSSMKFLMVAAEPVRQTTVKRFVELTRPFGLSQGVMAPGYGL 799
+V + + + VR + + EP +V + R + + GYG
Sbjct: 315 NFLVDEVPEAFEGVR--------YAITGGEP---ASVPHVAKARRDHPALR--LGNGYGP 361
Query: 800 AENCVFVSC-------AYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEP 852
AE+ F + G PI + G+ YV +D + P +
Sbjct: 362 AESMGFTTHHAVVAGDLSGTALPIGVPLAGKR--AYVLDDD-------LKPAAN------ 406
Query: 853 GKEGEVWISSPSAGIGYWGREELSQITF-RNELQNNRGRKYTRTGDLG-RIIDGKFFITG 910
G GE++++ GY R L+ F + G + RTGDL R DG G
Sbjct: 407 GALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVG 466
Query: 911 R 911
R
Sbjct: 467 R 467
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGM 60
R+ IVG G SGLS AY LA G++ VT+LE GG
Sbjct: 48 RVVIVGAGMSGLSAAYVLANAGHQ-VTVLEASERAGGQ 84
>pdb|2IC7|A Chain A, Crystal Structure Of Maltose Transacetylase From Geobacillus
Kaustophilus
pdb|2IC7|B Chain B, Crystal Structure Of Maltose Transacetylase From Geobacillus
Kaustophilus
pdb|2IC7|C Chain C, Crystal Structure Of Maltose Transacetylase From Geobacillus
Kaustophilus
pdb|2P2O|A Chain A, Crystal Structure Of Maltose Transacetylase From Geobacillus
Kaustophilus P2(1) Crystal Form
pdb|2P2O|B Chain B, Crystal Structure Of Maltose Transacetylase From Geobacillus
Kaustophilus P2(1) Crystal Form
pdb|2P2O|C Chain C, Crystal Structure Of Maltose Transacetylase From Geobacillus
Kaustophilus P2(1) Crystal Form
pdb|2P2O|D Chain D, Crystal Structure Of Maltose Transacetylase From Geobacillus
Kaustophilus P2(1) Crystal Form
pdb|2P2O|E Chain E, Crystal Structure Of Maltose Transacetylase From Geobacillus
Kaustophilus P2(1) Crystal Form
pdb|2P2O|F Chain F, Crystal Structure Of Maltose Transacetylase From Geobacillus
Kaustophilus P2(1) Crystal Form
Length = 185
Score = 35.4 bits (80), Expect = 0.39, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 1331 ITDPSLVLIGDGAVISEGALIQS-------HEVKNGVLSFQPIKIARKVSVGPYAVIQKG 1383
I D V IGD I G I + HE +G+ +P+ I V +G AVI G
Sbjct: 89 ILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPG 148
Query: 1384 SVIGEEAEVAPLQKSEGGKPILKSTNANYVQKGGAVSKI 1422
IG+ A +A G + K AN V GG +K+
Sbjct: 149 VTIGDNAVIA------SGAVVTKDVPANAVV-GGNPAKV 180
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 24 IGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCXXXXXXXXXXXXXXMDSHKLAL 83
+ IVG GPSGL+ A AL K G +V ++E VGG
Sbjct: 8 VAIVGAGPSGLAAATALRKAGL-SVAVIEARDRVGGRTWTDT------------------ 48
Query: 84 IDGSTGEFQDIKVADDYVSVISLTLELQDKAKESGRIG 121
IDG+ E V+ D ++ISL EL K E R G
Sbjct: 49 IDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYREG 86
>pdb|3TIO|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|B Chain B, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|C Chain C, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|D Chain D, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|E Chain E, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|F Chain F, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIS|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
pdb|3TIS|B Chain B, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
pdb|3TIS|C Chain C, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
Length = 183
Score = 35.4 bits (80), Expect = 0.42, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 1630 VIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYIGS 1670
++G S++L ++V DV++GA S+ P + L+ G +Y+GS
Sbjct: 104 LVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGS 144
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 24 IGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCXXXXXXXXXXXXXXMDSHKLAL 83
+ IVG GPSGL+ A AL K G +V ++E VGG
Sbjct: 8 VAIVGAGPSGLAAATALRKAGL-SVAVIEARDRVGGRTWTDT------------------ 48
Query: 84 IDGSTGEFQDIKVADDYVSVISLTLELQDKAKESGRIG 121
IDG+ E V+ D ++ISL EL K E R G
Sbjct: 49 IDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYREG 86
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 24 IGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCXXXXXXXXXXXXXXMDSHKLAL 83
+ IVG GPSGL+ A AL K G +V ++E VGG
Sbjct: 8 VAIVGAGPSGLAAATALRKAGL-SVAVIEARDRVGGRTWTDT------------------ 48
Query: 84 IDGSTGEFQDIKVADDYVSVISLTLELQDKAKESGRIG 121
IDG+ E V+ D ++ISL EL K E R G
Sbjct: 49 IDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYREG 86
>pdb|3DJD|A Chain A, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii)
pdb|3DJD|B Chain B, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii)
pdb|3DJE|A Chain A, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii) In
Complex With Fsa
pdb|3DJE|B Chain B, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii) In
Complex With Fsa
Length = 438
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKY 54
IVG G G STA LA+ GY NVT+L+ Y
Sbjct: 11 IVGAGTWGTSTALHLARRGYTNVTVLDPY 39
>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 26 IVGGGPSGLSTAYALAK-LGYRNVTLLEKYHTVGG 59
IVGGG GL+TAY LAK G NV +LEK GG
Sbjct: 26 IVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGG 60
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
I+GGGP+G A A+LG+ N +EK +GG C
Sbjct: 10 IIGGGPAGYVAAIKAAQLGF-NTACVEKRGKLGGTC 44
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
++GGGP+GL +A+ L K GY+ VT+LE GG
Sbjct: 16 VLGGGPAGLCSAFELQKAGYK-VTVLEARTRPGG 48
>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 26 IVGGGPSGLSTAYALAK-LGYRNVTLLEKYHTVGG 59
IVGGG GL+TAY LAK G NV +LEK GG
Sbjct: 26 IVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGG 60
>pdb|3VBP|A Chain A, Crystal Structure Of The D94n Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBP|C Chain C, Crystal Structure Of The D94n Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBP|E Chain E, Crystal Structure Of The D94n Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
Length = 205
Score = 34.3 bits (77), Expect = 0.88, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 1609 IPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSVAPMHSVLQRGGIYI 1668
IP Y ++ GKV ++ + +IG+ S++ PN V+ V +GA+S+ + L IY+
Sbjct: 123 IPNQYKNVKT--GKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSM--VKESLDDWYIYV 178
Query: 1669 G 1669
G
Sbjct: 179 G 179
>pdb|1SI8|A Chain A, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|B Chain B, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|C Chain C, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|D Chain D, Crystal Structure Of E. Faecalis Catalase
Length = 484
Score = 33.9 bits (76), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 1924 YIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
+ +QI P M++ D TK + EYP I+VG +++++N E E++ F+P
Sbjct: 256 WTLSVQIIPYADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRNPENYFAEVEQVTFSP 315
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+ R+ +VG GPSGL A AL GY +V L E +GG
Sbjct: 391 DARVLVVGAGPSGLEAARALGVRGY-DVVLAEAGRDLGG 428
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 118/312 (37%), Gaps = 79/312 (25%)
Query: 735 PNFAFELMVRRLESSKDKVRSFDLSSMKFLMVAAEP----VRQTTVKRF-VELTRPFGLS 789
P++ L+ + D S S+K + AEP +R R ++ +GLS
Sbjct: 192 PSYMLNLIDEMVRQGMDPAES----SLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLS 247
Query: 790 QGVMAPGYGLAENCVFVSCAYGQGKPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEI 849
+ VM PG V C + P+I W+ D P+ I++P T E +
Sbjct: 248 E-VMGPG-------VACECVETKDGPVI--WE--------DHFYPE----IIDPVTGEVL 285
Query: 850 GEPGKEGEVWISSPSAGIGYWGREELSQITFRNE----LQNNRGRKYTRTGDLGRIIDGK 905
+ G +GE+ +S + +E + I +R L R R
Sbjct: 286 PD-GSQGELVFTSLT-------KEAMPVIRYRTRDLTALLPPTARAMRRLAK-------- 329
Query: 906 FFITGRIKDLIIVAGRNVYSADVEKTV--------ESSTEHIRPGCCAVIGVPEEVLSTK 957
ITGR D++IV G NV+ + +E+ V + R G + + E+ S
Sbjct: 330 --ITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEA 387
Query: 958 GISVSDGSDQVGLVVIAEVRDGKPVDKDVIENIKTRVVEEHGVTVASVKLIKPRTMSKTT 1017
SV+DG + +++ IKT V GVTV + I T
Sbjct: 388 AASVTDGERAA-------------LARELQHRIKTMVGVSSGVTVLAAGGI-----PATA 429
Query: 1018 SGKIKRFECLKQ 1029
+GK +R +Q
Sbjct: 430 TGKARRVIDRRQ 441
>pdb|1DGG|A Chain A, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGG|B Chain B, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGG|C Chain C, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGG|D Chain D, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGF|A Chain A, Human Erythrocyte Catalase
pdb|1DGF|B Chain B, Human Erythrocyte Catalase
pdb|1DGF|C Chain C, Human Erythrocyte Catalase
pdb|1DGF|D Chain D, Human Erythrocyte Catalase
Length = 497
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 106/292 (36%), Gaps = 44/292 (15%)
Query: 1711 KVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSN-SLSXXXXXXXX 1768
++ R H G G + +I K+F H GK P+ VR S +
Sbjct: 64 RIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVR 123
Query: 1769 XXXXXXXXFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIR 1828
F +GN DL F+ R F +++ + H+K
Sbjct: 124 DPRGFAVKFYTEDGN----WDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDP---- 175
Query: 1829 DAVWK--SLR---------------LSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPY 1871
D VW SLR + D + M+ Y + +G+ +Y KF +
Sbjct: 176 DMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYK-T 234
Query: 1872 DESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIR 1931
D+ I S E + + ++D P + D F +++ + F +Q+
Sbjct: 235 DQGIKNLSVE---------DAARLSQED----PDYGIRDLFNA-IATGKYPSWTFYIQVM 280
Query: 1932 PIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
Q E D TK W +YP I VG++ +++N E E++ F+P
Sbjct: 281 TFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDP 332
>pdb|1DGH|A Chain A, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
pdb|1DGH|C Chain C, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
pdb|1DGB|A Chain A, Human Erythrocyte Catalase
pdb|1DGB|B Chain B, Human Erythrocyte Catalase
pdb|1DGB|C Chain C, Human Erythrocyte Catalase
pdb|1DGB|D Chain D, Human Erythrocyte Catalase
Length = 498
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 106/292 (36%), Gaps = 44/292 (15%)
Query: 1711 KVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSN-SLSXXXXXXXX 1768
++ R H G G + +I K+F H GK P+ VR S +
Sbjct: 65 RIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVR 124
Query: 1769 XXXXXXXXFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIR 1828
F +GN DL F+ R F +++ + H+K
Sbjct: 125 DPRGFAVKFYTEDGN----WDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDP---- 176
Query: 1829 DAVWK--SLR---------------LSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPY 1871
D VW SLR + D + M+ Y + +G+ +Y KF +
Sbjct: 177 DMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYK-T 235
Query: 1872 DESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIR 1931
D+ I S E + + ++D P + D F +++ + F +Q+
Sbjct: 236 DQGIKNLSVE---------DAARLSQED----PDYGIRDLFNA-IATGKYPSWTFYIQVM 281
Query: 1932 PIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
Q E D TK W +YP I VG++ +++N E E++ F+P
Sbjct: 282 TFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDP 333
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+VG G SGLS AY LA G++ VT+LE GG
Sbjct: 38 VVGAGMSGLSAAYVLAGAGHK-VTVLEASERAGG 70
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 55/184 (29%)
Query: 759 SSMKFLMVAAEP----VRQTTVKRF-VELTRPFGLSQGVMAPGYGLAENCVFVSCAYGQG 813
SS++ + AEP +R +R ++ +GLS+ VM PG V C +
Sbjct: 210 SSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE-VMGPG-------VASECVETKD 261
Query: 814 KPIILDWQGRVCCGYVDQNDPDVDIRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGRE 873
P I W+ D P+ I++PET E + + G+ GE+ +S + +E
Sbjct: 262 GPTI--WE--------DHFYPE----IIDPETGEVLPD-GELGELVFTSLT-------KE 299
Query: 874 ELSQITFRNELQNNRGRKYTRTGDLGRIIDGKFF-------ITGRIKDLIIVAGRNVYSA 926
L I +R T DL R++ G ITGR D++IV G NV+
Sbjct: 300 ALPIIRYR-------------TRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPT 346
Query: 927 DVEK 930
+E+
Sbjct: 347 QIEE 350
>pdb|1KQA|A Chain A, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KQA|B Chain B, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KQA|C Chain C, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KRR|A Chain A, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KRR|B Chain B, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KRR|C Chain C, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KRU|A Chain A, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|B Chain B, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|C Chain C, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRV|A Chain A, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|B Chain B, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|C Chain C, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
Length = 203
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 1331 ITDPSLVLIGDGAVISEGALIQ------SHEV-KNGVLSFQPIKIARKVSVGPYAVIQKG 1383
I D V IGD +I+ + HE+ KNG + PI I V +G + VI G
Sbjct: 90 IVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPG 149
Query: 1384 SVIGEEAEVAPLQKSEGGKPILKSTNANYVQKG 1416
IG+ + + G + K N V G
Sbjct: 150 VTIGDNSVIG------AGSIVTKDIPPNVVAAG 176
>pdb|1QQW|A Chain A, Crystal Structure Of Human Erythrocyte Catalase
pdb|1QQW|B Chain B, Crystal Structure Of Human Erythrocyte Catalase
pdb|1QQW|C Chain C, Crystal Structure Of Human Erythrocyte Catalase
pdb|1QQW|D Chain D, Crystal Structure Of Human Erythrocyte Catalase
pdb|1F4J|A Chain A, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
pdb|1F4J|B Chain B, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
pdb|1F4J|C Chain C, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
pdb|1F4J|D Chain D, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
Length = 527
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 106/292 (36%), Gaps = 44/292 (15%)
Query: 1711 KVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSN-SLSXXXXXXXX 1768
++ R H G G + +I K+F H GK P+ VR S +
Sbjct: 68 RIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVR 127
Query: 1769 XXXXXXXXFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIR 1828
F +GN DL F+ R F +++ + H+K
Sbjct: 128 DPRGFAVKFYTEDGN----WDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDP---- 179
Query: 1829 DAVWK--SLR---------------LSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPY 1871
D VW SLR + D + M+ Y + +G+ +Y KF +
Sbjct: 180 DMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYK-T 238
Query: 1872 DESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSSPSGVRYIFQLQIR 1931
D+ I S E + + ++D P + D F +++ + F +Q+
Sbjct: 239 DQGIKNLSVE---------DAARLSQED----PDYGIRDLFNA-IATGKYPSWTFYIQVM 284
Query: 1932 PIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
Q E D TK W +YP I VG++ +++N E E++ F+P
Sbjct: 285 TFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDP 336
>pdb|1DGH|B Chain B, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
pdb|1DGH|D Chain D, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
Length = 498
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 1924 YIFQLQIRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
+ F +Q+ Q E D TK W +YP I VG++ +++N E E++ F+P
Sbjct: 274 WTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDP 333
>pdb|3NWL|A Chain A, The Crystal Structure Of The P212121 Form Of Bovine Liver
Catalase Previously Characterized By Electron Microscopy
pdb|3NWL|B Chain B, The Crystal Structure Of The P212121 Form Of Bovine Liver
Catalase Previously Characterized By Electron Microscopy
pdb|3NWL|C Chain C, The Crystal Structure Of The P212121 Form Of Bovine Liver
Catalase Previously Characterized By Electron Microscopy
pdb|3NWL|D Chain D, The Crystal Structure Of The P212121 Form Of Bovine Liver
Catalase Previously Characterized By Electron Microscopy
Length = 527
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 103/294 (35%), Gaps = 48/294 (16%)
Query: 1711 KVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSN-SLSXXXXXXXX 1768
++ R H G G + +I K+F H GK P+ VR S +
Sbjct: 68 RIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVR 127
Query: 1769 XXXXXXXXFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIR 1828
F +GN DL F+ R F +++ + H+K
Sbjct: 128 DPRGFAVKFYTEDGN----WDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDP---- 179
Query: 1829 DAVWK--SLR---------------LSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPY 1871
D VW SLR + D + M Y + DG+ +Y KF +
Sbjct: 180 DMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMDGYGSHTFKLVNADGEAVYCKFHYK-T 238
Query: 1872 DESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSS--PSGVRYIFQLQ 1929
D+ I S E + + +D P L D F + PS YI Q
Sbjct: 239 DQGIKNLSVE---------DAARLAHED----PDYGLRDLFNAIATGNYPSWTLYI---Q 282
Query: 1930 IRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
+ + E D TK W +YP I VG++ +++N E E+L F+P
Sbjct: 283 VMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDP 336
>pdb|7CAT|A Chain A, The Nadph Binding Site On Beef Liver Catalase
pdb|8CAT|A Chain A, The Nadph Binding Site On Beef Liver Catalase
pdb|8CAT|B Chain B, The Nadph Binding Site On Beef Liver Catalase
pdb|4BLC|A Chain A, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|4BLC|B Chain B, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|4BLC|C Chain C, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|4BLC|D Chain D, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|1TGU|A Chain A, The Crystal Structure Of Bovine Liver Catalase Without Nadph
pdb|1TGU|B Chain B, The Crystal Structure Of Bovine Liver Catalase Without Nadph
pdb|1TGU|C Chain C, The Crystal Structure Of Bovine Liver Catalase Without Nadph
pdb|1TGU|D Chain D, The Crystal Structure Of Bovine Liver Catalase Without Nadph
pdb|1TH2|A Chain A, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With Azide
pdb|1TH2|B Chain B, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With Azide
pdb|1TH2|C Chain C, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With Azide
pdb|1TH2|D Chain D, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With Azide
pdb|1TH3|A Chain A, Crystal Structure Of Nadph Depleted Bovine Live Catalase
Complexed With Cyanide
pdb|1TH3|B Chain B, Crystal Structure Of Nadph Depleted Bovine Live Catalase
Complexed With Cyanide
pdb|1TH3|C Chain C, Crystal Structure Of Nadph Depleted Bovine Live Catalase
Complexed With Cyanide
pdb|1TH3|D Chain D, Crystal Structure Of Nadph Depleted Bovine Live Catalase
Complexed With Cyanide
pdb|1TH4|A Chain A, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With 3-Amino-1,2,4-Triazole
pdb|1TH4|B Chain B, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With 3-Amino-1,2,4-Triazole
pdb|1TH4|C Chain C, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With 3-Amino-1,2,4-Triazole
pdb|1TH4|D Chain D, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With 3-Amino-1,2,4-Triazole
pdb|7CAT|B Chain B, The Nadph Binding Site On Beef Liver Catalase
Length = 506
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 103/294 (35%), Gaps = 48/294 (16%)
Query: 1711 KVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSN-SLSXXXXXXXX 1768
++ R H G G + +I K+F H GK P+ VR S +
Sbjct: 67 RIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVR 126
Query: 1769 XXXXXXXXFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIR 1828
F +GN DL F+ R F +++ + H+K
Sbjct: 127 DPRGFAVKFYTEDGN----WDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDP---- 178
Query: 1829 DAVWK--SLR---------------LSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPY 1871
D VW SLR + D + M Y + DG+ +Y KF +
Sbjct: 179 DMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMDGYGSHTFKLVNADGEAVYCKFHYK-T 237
Query: 1872 DESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSS--PSGVRYIFQLQ 1929
D+ I S E + + +D P L D F + PS YI Q
Sbjct: 238 DQGIKNLSVE---------DAARLAHED----PDYGLRDLFNAIATGNYPSWTLYI---Q 281
Query: 1930 IRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
+ + E D TK W +YP I VG++ +++N E E+L F+P
Sbjct: 282 VMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDP 335
>pdb|2G37|A Chain A, Structure Of Thermus Thermophilus L-Proline Dehydrogenase
pdb|2G37|B Chain B, Structure Of Thermus Thermophilus L-Proline Dehydrogenase
Length = 327
Score = 32.3 bits (72), Expect = 3.0, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 107 TLELQDKAKES-GRIGVHAVSDLASDLTPTYLEDRGF-------------KSVPKSVAYG 152
TLE KA E+ R GVHA+ DL ++ T E R F K PK ++
Sbjct: 60 TLEEALKAAEALEREGVHAILDLLGEMVRTEEEARAFQRGLLELVWALAGKPWPKYISLK 119
Query: 153 YTASGYGFVQDMPYAYIHEFTRTS 176
T G +D+ A + E R +
Sbjct: 120 LTQLGLDLSEDLALALLREVLREA 143
>pdb|2EKG|A Chain A, Structure Of Thermus Thermophilus Proline Dehydrogenase
Inactivated By N-propargylglycine
pdb|2EKG|B Chain B, Structure Of Thermus Thermophilus Proline Dehydrogenase
Inactivated By N-propargylglycine
Length = 327
Score = 32.3 bits (72), Expect = 3.1, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 107 TLELQDKAKES-GRIGVHAVSDLASDLTPTYLEDRGF-------------KSVPKSVAYG 152
TLE KA E+ R GVHA+ DL ++ T E R F K PK ++
Sbjct: 60 TLEEALKAAEALEREGVHAILDLLGEMVRTEEEARAFQRGLLELVWALAGKPWPKYISLX 119
Query: 153 YTASGYGFVQDMPYAYIHEFTRTS 176
T G +D+ A + E R +
Sbjct: 120 LTQLGLDLSEDLALALLREVLREA 143
>pdb|3VBN|A Chain A, Crystal Structure Of The D94a Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBN|C Chain C, Crystal Structure Of The D94a Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBN|E Chain E, Crystal Structure Of The D94a Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
Length = 205
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 1621 GKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSV 1654
GKV ++ + +IG+ S++ PN V+ V +GA+S+
Sbjct: 133 GKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSM 166
>pdb|3VBM|A Chain A, Crystal Structure Of The S84t Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBM|C Chain C, Crystal Structure Of The S84t Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBM|E Chain E, Crystal Structure Of The S84t Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
Length = 205
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 1609 IPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSV 1654
IP Y ++ GKV ++ + +IG+ S++ PN V+ V +GA+S+
Sbjct: 123 IPNQYKNVKT--GKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSM 166
>pdb|3VBK|A Chain A, Crystal Structure Of The S84a Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBK|C Chain C, Crystal Structure Of The S84a Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBK|E Chain E, Crystal Structure Of The S84a Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
Length = 205
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 1609 IPGFYSSIGFIFGKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSV 1654
IP Y ++ GKV ++ + +IG+ S++ PN V+ V +GA+S+
Sbjct: 123 IPNQYKNVKT--GKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSM 166
>pdb|3VBL|A Chain A, Crystal Structure Of The S84c Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBL|C Chain C, Crystal Structure Of The S84c Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBL|E Chain E, Crystal Structure Of The S84c Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
Length = 205
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 1621 GKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSV 1654
GKV ++ + +IG+ S++ PN V+ V +GA+S+
Sbjct: 133 GKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSM 166
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53
NT+ +VG GP GL A LA LG R V L+EK
Sbjct: 91 TNTKCLVVGAGPCGLRAAVELALLGAR-VVLVEK 123
>pdb|3VBI|A Chain A, Crystal Structure Of Antd, An N-Acyltransferase From
Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBI|C Chain C, Crystal Structure Of Antd, An N-Acyltransferase From
Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBI|E Chain E, Crystal Structure Of Antd, An N-Acyltransferase From
Bacillus Cereus In Complex With
Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
pdb|3VBJ|A Chain A, Crystal Structure Of Antd, An N-Acyltransferase From
Bacillus Cereus In Complex With Dtdp And
3-Hydroxybutyryl-Coa
pdb|3VBJ|C Chain C, Crystal Structure Of Antd, An N-Acyltransferase From
Bacillus Cereus In Complex With Dtdp And
3-Hydroxybutyryl-Coa
pdb|3VBJ|E Chain E, Crystal Structure Of Antd, An N-Acyltransferase From
Bacillus Cereus In Complex With Dtdp And
3-Hydroxybutyryl-Coa
Length = 205
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 1621 GKVEVQDNSVIGSQSLVLPNSVVSRDVILGALSV 1654
GKV ++ + +IG+ S++ PN V+ V +GA+S+
Sbjct: 133 GKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSM 166
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 21 NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53
NT+ +VG GP GL A LA LG R V L+EK
Sbjct: 84 NTKCLVVGAGPCGLRAAVELALLGAR-VVLVEK 115
>pdb|2J2M|A Chain A, Crystal Structure Analysis Of Catalase From Exiguobacterium
Oxidotolerans
pdb|2J2M|B Chain B, Crystal Structure Analysis Of Catalase From Exiguobacterium
Oxidotolerans
pdb|2J2M|C Chain C, Crystal Structure Analysis Of Catalase From Exiguobacterium
Oxidotolerans
pdb|2J2M|D Chain D, Crystal Structure Analysis Of Catalase From Exiguobacterium
Oxidotolerans
Length = 491
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 1944 LDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNPYLKCNEIDVIPATTSSQSAS 2001
LD TK W E P+ VG +++++N+ E+E + FNP + ++P S+
Sbjct: 278 LDATKDWFEDVIPFQHVGTMTLNKNVDNYFAETESVGFNPGV------LVPGMLPSEDKL 331
Query: 2002 IDHGRSLIYEICQHLRNG 2019
+ GR Y Q R G
Sbjct: 332 L-QGRLFSYSDTQRHRIG 348
>pdb|2BVD|A Chain A, How Family 26 Glycoside Hydrolases Orchestrate Catalysis
On Different Polysaccharides. Structure And Activity Of
A Clostridium Thermocellum Lichenase, Ctlic26a
Length = 283
Score = 32.0 bits (71), Expect = 4.0, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 415 NSSYSMALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKELEELPGVEFPELSSLDGY 474
N +Y A +H + + VK +F + DN L PG + + +S+DGY
Sbjct: 128 NETYIAAF--RHIVDIFRANGATNVKWVFNVNCDNVGNGTSYLGHYPGDNYVDYTSIDGY 185
Query: 475 LKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVI 527
+WGT TQ +W S ++ D SR L + KP+I
Sbjct: 186 --NWGT---TQ-----SW---------GSQWQSFDQVFSRAYQALASINKPII 219
>pdb|2BV9|A Chain A, How Family 26 Glycoside Hydrolases Orchestrate Catalysis
On Different Polysaccharides. Structure And Activity Of
A Clostridium Thermocellum Lichenase, Ctlic26a
Length = 290
Score = 32.0 bits (71), Expect = 4.0, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 415 NSSYSMALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKELEELPGVEFPELSSLDGY 474
N +Y A +H + + VK +F + DN L PG + + +S+DGY
Sbjct: 128 NETYIAAF--RHIVDIFRANGATNVKWVFNVNCDNVGNGTSYLGHYPGDNYVDYTSIDGY 185
Query: 475 LKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVI 527
+WGT TQ +W S ++ D SR L + KP+I
Sbjct: 186 --NWGT---TQ-----SW---------GSQWQSFDQVFSRAYQALASINKPII 219
>pdb|2CIP|A Chain A, Structure Of The Michaelis Complex Of A Family 26
Lichenase
Length = 282
Score = 32.0 bits (71), Expect = 4.0, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 415 NSSYSMALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKELEELPGVEFPELSSLDGY 474
N +Y A +H + + VK +F + DN L PG + + +S+DGY
Sbjct: 128 NETYIAAF--RHIVDIFRANGATNVKWVFNVNCDNVGNGTSYLGHYPGDNYVDYTSIDGY 185
Query: 475 LKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVI 527
+WGT TQ +W S ++ D SR L + KP+I
Sbjct: 186 --NWGT---TQ-----SW---------GSQWQSFDQVFSRAYQALASINKPII 219
>pdb|2CIT|A Chain A, Structure Of The Covalent Intermediate Of A Family 26
Lichenase
Length = 282
Score = 32.0 bits (71), Expect = 4.0, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 415 NSSYSMALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKELEELPGVEFPELSSLDGY 474
N +Y A +H + + VK +F + DN L PG + + +S+DGY
Sbjct: 128 NETYIAAF--RHIVDIFRANGATNVKWVFNVNCDNVGNGTSYLGHYPGDNYVDYTSIDGY 185
Query: 475 LKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVI 527
+WGT TQ +W S ++ D SR L + KP+I
Sbjct: 186 --NWGT---TQ-----SW---------GSQWQSFDQVFSRAYQALASINKPII 219
>pdb|2VI0|A Chain A, Lichenase Ctlic26 In Complex With A Thio-Oligosaccharide
Length = 282
Score = 32.0 bits (71), Expect = 4.1, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 415 NSSYSMALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKELEELPGVEFPELSSLDGY 474
N +Y A +H + + VK +F + DN L PG + + +S+DGY
Sbjct: 128 NETYIAAF--RHIVDIFRANGATNVKWVFNVNCDNVGNGTSYLGHYPGDNYVDYTSIDGY 185
Query: 475 LKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVI 527
+WGT TQ +W S ++ D SR L + KP+I
Sbjct: 186 --NWGT---TQ-----SW---------GSQWQSFDQVFSRAYQALASINKPII 219
>pdb|2V3G|A Chain A, Structure Of A Family 26 Lichenase In Complex With
Noeuromycin
Length = 283
Score = 32.0 bits (71), Expect = 4.1, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 415 NSSYSMALMCKHFANNYSTPEFPYVKNLFPLQSDNWARNFKELEELPGVEFPELSSLDGY 474
N +Y A +H + + VK +F + DN L PG + + +S+DGY
Sbjct: 128 NETYIAAF--RHIVDIFRANGATNVKWVFNVNCDNVGNGTSYLGHYPGDNYVDYTSIDGY 185
Query: 475 LKHWGTHRITQKKTLFTWINEEGVAVNQSTYEELDANASRIAHKLLTSRKPVI 527
+WGT TQ +W S ++ D SR L + KP+I
Sbjct: 186 --NWGT---TQ-----SW---------GSQWQSFDQVFSRAYQALASINKPII 219
>pdb|2FJA|A Chain A, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJA|C Chain C, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJB|A Chain A, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJB|C Chain C, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJD|A Chain A, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJD|C Chain C, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJE|A Chain A, Adenosine-5-Phosphosulfate Reductase Oxidized State
pdb|2FJE|C Chain C, Adenosine-5-Phosphosulfate Reductase Oxidized State
Length = 643
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 16 PCLPVNTRIGIVGGGPSGLSTAYA---LAKLGYRNVTLLEK 53
P V T I I+GGG SG AY AKLG VTL+EK
Sbjct: 17 PTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK 57
>pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 643
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 16 PCLPVNTRIGIVGGGPSGLSTAYA---LAKLGYRNVTLLEK 53
P V T I I+GGG SG AY AKLG VTL+EK
Sbjct: 17 PTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK 57
>pdb|3RGP|A Chain A, Structural And Kinetic Analysis Of The Beef Liver Catalase
Complexed With Nitric Oxide
pdb|3RGP|B Chain B, Structural And Kinetic Analysis Of The Beef Liver Catalase
Complexed With Nitric Oxide
pdb|3RGP|C Chain C, Structural And Kinetic Analysis Of The Beef Liver Catalase
Complexed With Nitric Oxide
pdb|3RGP|D Chain D, Structural And Kinetic Analysis Of The Beef Liver Catalase
Complexed With Nitric Oxide
pdb|3RGS|A Chain A, Structural And Kinetic Analysis Of The Beef Liver Catalase
With The Ammonia As A Ligand
pdb|3RGS|B Chain B, Structural And Kinetic Analysis Of The Beef Liver Catalase
With The Ammonia As A Ligand
pdb|3RGS|C Chain C, Structural And Kinetic Analysis Of The Beef Liver Catalase
With The Ammonia As A Ligand
pdb|3RGS|D Chain D, Structural And Kinetic Analysis Of The Beef Liver Catalase
With The Ammonia As A Ligand
pdb|3RE8|A Chain A, Structural And Kinetic Analysis Of The Beef Liver Catalase
Interacting With Nitric Oxide
pdb|3RE8|B Chain B, Structural And Kinetic Analysis Of The Beef Liver Catalase
Interacting With Nitric Oxide
pdb|3RE8|C Chain C, Structural And Kinetic Analysis Of The Beef Liver Catalase
Interacting With Nitric Oxide
pdb|3RE8|D Chain D, Structural And Kinetic Analysis Of The Beef Liver Catalase
Interacting With Nitric Oxide
Length = 499
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 104/294 (35%), Gaps = 48/294 (16%)
Query: 1711 KVKSRYFHRIGVSGRGQLTIYDNIQGLPDHKIF-HPGKCYPVIVRHSN-SLSXXXXXXXX 1768
++ R H G G + +I K+F H GK P+ VR S +
Sbjct: 65 RIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVR 124
Query: 1769 XXXXXXXXFSDLNGNTSSLLDLTLKTGNAFYARTIGDFATWLVCGLAAREEHVKRVPHIR 1828
F +GN DL F+ R F +++ + H+K
Sbjct: 125 DPRGFAVKFYTEDGN----WDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDP---- 176
Query: 1829 DAVWK--SLR---------------LSDSYAEMHYYSNICRLFRFTDGQEMYVKFKLRPY 1871
D VW SLR + D + M+ Y + +G+ +Y KF +
Sbjct: 177 DMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYK-T 235
Query: 1872 DESIGEDSGEVEPRGILPPETGAIPRDDNDTRPLLFLADEFQRRVSS--PSGVRYIFQLQ 1929
D+ I S E + + +D P L D F + PS YI Q
Sbjct: 236 DQGIKNLSVE---------DAARLAHED----PDYGLRDLFNAIATGNYPSWTLYI---Q 279
Query: 1930 IRPIPQDEAMQDIALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
+ + E D TK W +YP I VG++ +++N E E+L F+P
Sbjct: 280 VMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDP 333
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
+VG G SGLS AY L+ G++ VT+LE GG
Sbjct: 38 VVGAGMSGLSAAYVLSGAGHQ-VTVLEASERAGG 70
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 32.0 bits (71), Expect = 4.7, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGY-RNVTLLE 52
++GIVG G G +TAYALA LG R V L++
Sbjct: 2 KVGIVGSGMVGSATAYALALLGVAREVVLVD 32
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 32.0 bits (71), Expect = 4.7, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGY-RNVTLLE 52
++GIVG G G +TAYALA LG R V L++
Sbjct: 2 KVGIVGSGMVGSATAYALALLGVAREVVLVD 32
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 32.0 bits (71), Expect = 4.7, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 23 RIGIVGGGPSGLSTAYALAKLGY-RNVTLLE 52
++GIVG G G +TAYALA LG R V L++
Sbjct: 2 KVGIVGSGMVGSATAYALALLGVAREVVLVD 32
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
IVG GPSGL+ A L K G +V +LE VGG
Sbjct: 12 IVGAGPSGLTAARELKKAGL-SVAVLEARDRVGG 44
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
IVG G +GLS AY LA G++ VT+LE GG
Sbjct: 38 IVGAGMAGLSAAYVLAGAGHQ-VTVLEASERPGG 70
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 31.6 bits (70), Expect = 5.3, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTL 50
+VGGGPSGLS A LA+ G + + L
Sbjct: 6 VVGGGPSGLSAALFLARAGLKVLVL 30
>pdb|3EEV|A Chain A, Crystal Structure Of Chloramphenicol Acetyltransferase
Vca0300 From Vibrio Cholerae O1 Biovar Eltor
pdb|3EEV|B Chain B, Crystal Structure Of Chloramphenicol Acetyltransferase
Vca0300 From Vibrio Cholerae O1 Biovar Eltor
pdb|3EEV|C Chain C, Crystal Structure Of Chloramphenicol Acetyltransferase
Vca0300 From Vibrio Cholerae O1 Biovar Eltor
Length = 212
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 2232 GKVKFGKIRIGEGGFVGSRAAAMPGVRIENGGSLSSLSLAMKE 2274
G + G IG ++G+ A MPGV+I +G ++S S+ K+
Sbjct: 105 GFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKD 147
>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|B Chain B, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|C Chain C, Crystal Structure Of Lpxd From Escherichia Coli
Length = 341
Score = 31.6 bits (70), Expect = 5.8, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 1318 AKLGSSVLLDTVDITDPSLVLIGDGAVISEGALI-QSHEVKNGVLSFQPIKIARKVSVGP 1376
AKLG++V + + + S V +GD +I G + ++ ++ G + + I ++ +G
Sbjct: 110 AKLGNNVSIGANAVIE-SGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQ 168
Query: 1377 YAVIQKGSVIGEEA 1390
+IQ G+V+G +
Sbjct: 169 NCLIQSGTVVGADG 182
>pdb|2AYY|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-816) Containing Linker Region
Length = 121
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 1043 FTKRKLTRSFTTGTCKEGRTPRPQ--LVSSPVASKKMSNKDIVEFLKGLVSEQTGIPITK 1100
F + L RS T EG+ P P+ L++ V SKK + +V F + GIP+ K
Sbjct: 26 FLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTFCR----RHIGIPLEK 81
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 31/103 (30%)
Query: 838 IRIVNPETSEEIGEPGKEGEVWISSPSAGIGYWGREELSQITFRNELQNNRGRKYTRTGD 897
+ I++PET E + E G+ GE+ +++ RE I +R T D
Sbjct: 267 VEIIDPETGEPVPE-GEIGELVLTT-------LDREXXPLIRYR-------------TRD 305
Query: 898 LGRIIDGKF----------FITGRIKDLIIVAGRNVYSADVEK 930
L RI+ GK I GR D I+ G N++ VEK
Sbjct: 306 LTRILPGKCPCGRTHLRIDRIKGRSDDXFIIKGVNIFPXQVEK 348
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori
In Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori
In Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEK 53
I+GGGP+GLS + G +N L EK
Sbjct: 6 IIGGGPAGLSAGLYATRGGVKNAVLFEK 33
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase
From Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase
From Sinorhizobium Meliloti 1021
Length = 491
Score = 31.2 bits (69), Expect = 6.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
++G GP G A A+LG + V ++EK T GG C
Sbjct: 30 VIGSGPGGYVCAIKAAQLGXK-VAVVEKRSTYGGTC 64
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter
Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter
Jejuni
Length = 315
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 24 IGIVGGGPSGLSTAYALAKLGYRNVTLLEK 53
+ I+GGGP+GLS + G +NV EK
Sbjct: 7 VAIIGGGPAGLSAGLYATRGGLKNVVXFEK 36
>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 472
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 13/138 (9%)
Query: 113 KAKESGRIGVHAVSDLASDLTPTYLEDRGFK-SVPKSVAYGYTASGYGFVQDMP------ 165
+ E+GR + + LA + +EDR + V G+ G V+D+
Sbjct: 113 RTDETGREIFNFLLKLAREEGIPIIEDRLVEIRVKDGKVTGFVTEKRGLVEDVDKLVLAT 172
Query: 166 --YAYIHEFTRTSMA----GKIRRFKGGYTSLWQKLSKYLPTEVHCNSEVLAIRRDSTTV 219
Y+Y++E++ T G FK G + ++ PT + EV +
Sbjct: 173 GGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGEVFLLTETLRGE 232
Query: 220 GVDVKHSNGECEVMEFDK 237
G + + NGE + +DK
Sbjct: 233 GAQIINENGERFLFNYDK 250
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 16 PCLPV--NTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
P LP + +VG GP+GL+ A A G++ VTL + + +GG
Sbjct: 366 PILPAVQKKNLAVVGAGPAGLAFAINAAARGHQ-VTLFDAHSEIGG 410
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
++GGG GL +A+ A+LG R + + H +GG C
Sbjct: 25 VIGGGSGGLESAWRAAELGARAAVV--ESHKLGGTC 58
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 19/98 (19%)
Query: 24 IGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMCXXXXXXXXXXXXXXMDSHKLAL 83
+ IVG G SGL+ A AL K G +V ++E VGG
Sbjct: 8 VAIVGAGISGLAAATALRKAGL-SVAVIEARDRVGGRTWTDT------------------ 48
Query: 84 IDGSTGEFQDIKVADDYVSVISLTLELQDKAKESGRIG 121
IDG+ E V+ D ++ISL EL K E R G
Sbjct: 49 IDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYREG 86
>pdb|3HJJ|A Chain A, Crystal Structure Of Maltose O-Acetyltransferase From
Bacillus Anthracis
pdb|3HJJ|B Chain B, Crystal Structure Of Maltose O-Acetyltransferase From
Bacillus Anthracis
pdb|3HJJ|C Chain C, Crystal Structure Of Maltose O-Acetyltransferase From
Bacillus Anthracis
pdb|3IGJ|A Chain A, Crystal Structure Of Maltose O-Acetyltransferase Complexed
With Acetyl Coenzyme A From Bacillus Anthracis
pdb|3IGJ|B Chain B, Crystal Structure Of Maltose O-Acetyltransferase Complexed
With Acetyl Coenzyme A From Bacillus Anthracis
pdb|3IGJ|C Chain C, Crystal Structure Of Maltose O-Acetyltransferase Complexed
With Acetyl Coenzyme A From Bacillus Anthracis
Length = 190
Score = 31.2 bits (69), Expect = 7.8, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 1319 KLGSSVLLDTVDITDPSLVLIGDGAVISEGALIQSHEVKNGVLSFQPIKIARKV 1372
K+G++V + I +P V IGD AVI+ GA++ N V+ P K+ + +
Sbjct: 136 KIGNNVWVGGGAIINPG-VSIGDNAVIASGAVVTKDVPNNVVVGGNPAKVIKTI 188
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 26 IVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGGMC 61
++GGG GL +A+ A+LG R + + H +GG C
Sbjct: 8 VIGGGSGGLESAWRAAELGARAAVV--ESHKLGGTC 41
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 1043 FTKRKLTRSFTTGTCKEGRTPRPQ--LVSSPVASKKMSNKDIVEFLKGLVSEQTGIPITK 1100
F + L RS T EG+ P P+ L++ V SKK + +V F + GIP+ K
Sbjct: 26 FLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTFCR----RHIGIPLEK 81
>pdb|3VNP|A Chain A, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|B Chain B, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|C Chain C, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
Length = 183
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 2203 NPEMVEMEGNGGCVGKEALLFGHIYEGDG----GKVKFGKIRIGEGGFVGSRAAAMPGVR 2258
NP ++E +G VG + +L I + G + + IGEG F+G+ + PG +
Sbjct: 70 NPLIIE---DGVTVGHQVILHSAIVRKNALIGMGSIILDRAEIGEGAFIGAGSLVPPGKK 126
Query: 2259 IENGGSLSSLSLAMKEEIVR 2278
I ++L+L ++VR
Sbjct: 127 I----PPNTLALGRPAKVVR 142
>pdb|1QWL|A Chain A, Structure Of Helicobacter Pylori Catalase
pdb|1QWL|B Chain B, Structure Of Helicobacter Pylori Catalase
pdb|1QWM|A Chain A, Structure Of Helicobacter Pylori Catalase With Formic Acid
Bound
pdb|1QWM|B Chain B, Structure Of Helicobacter Pylori Catalase With Formic Acid
Bound
Length = 505
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 21/126 (16%)
Query: 1926 FQLQIRPIPQDEAMQDI--ALDCTKPWDEAEYPYIDVGEISIDQNLST--EESEKLEFNP 1981
++L I+ +P+++A + D TK W +YP ++VG + +++N E E+ F P
Sbjct: 258 WKLSIQVMPEEDAKKYRFHPFDVTKIWYTQDYPLMEVGIVELNKNPENYFAEVEQAAFTP 317
Query: 1982 YLKCNEIDVIPATTSSQSASIDHGRSLIYEICQHLRNGEPLPESWRIFLEQSDVKVDLSG 2041
+V+P S + GR Y R G P+ + V+
Sbjct: 318 ------ANVVPGIGYSPDRML-QGRLFSYGDTHRYRLGVNYPQ----------IPVNKPR 360
Query: 2042 CPMAAA 2047
CP ++
Sbjct: 361 CPFHSS 366
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 20 VNTRIGIVGGGPSGLSTAYALAKLGYRNVTLLEKYHTVGG 59
V R+ +VG G SG+S A L++ G ++ +LE +GG
Sbjct: 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,314,404
Number of Sequences: 62578
Number of extensions: 2964899
Number of successful extensions: 6624
Number of sequences better than 100.0: 160
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 6397
Number of HSP's gapped (non-prelim): 243
length of query: 2280
length of database: 14,973,337
effective HSP length: 114
effective length of query: 2166
effective length of database: 7,839,445
effective search space: 16980237870
effective search space used: 16980237870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)