Query 037889
Match_columns 339
No_of_seqs 309 out of 2666
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:20:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 7.2E-26 1.6E-30 242.3 23.7 275 2-322 788-1100(1153)
2 KOG0617 Ras suppressor protein 99.2 1.9E-12 4.1E-17 106.7 -2.0 119 2-123 42-161 (264)
3 KOG0617 Ras suppressor protein 99.0 2.4E-11 5.2E-16 100.2 -3.8 79 3-84 66-146 (264)
4 PF13855 LRR_8: Leucine rich r 98.8 4E-09 8.6E-14 73.4 3.4 58 18-75 1-60 (61)
5 PLN00113 leucine-rich repeat r 98.8 7E-09 1.5E-13 110.6 5.5 89 7-97 155-248 (968)
6 PLN00113 leucine-rich repeat r 98.7 7.7E-09 1.7E-13 110.3 5.2 87 16-102 138-229 (968)
7 PLN03150 hypothetical protein; 98.7 3E-08 6.5E-13 100.5 7.6 75 7-83 433-509 (623)
8 KOG0472 Leucine-rich repeat pr 98.7 2.3E-09 4.9E-14 99.2 -1.6 112 3-123 193-308 (565)
9 KOG0444 Cytoskeletal regulator 98.6 2.7E-09 5.8E-14 103.6 -1.7 88 1-90 230-318 (1255)
10 KOG0444 Cytoskeletal regulator 98.6 3.9E-09 8.5E-14 102.4 -0.7 71 3-75 113-184 (1255)
11 PLN03210 Resistant to P. syrin 98.6 1.8E-07 3.8E-12 101.4 9.5 101 3-106 621-725 (1153)
12 KOG4194 Membrane glycoprotein 98.5 8.3E-08 1.8E-12 92.8 3.4 112 3-123 159-272 (873)
13 PF12799 LRR_4: Leucine Rich r 98.5 1.5E-07 3.4E-12 60.7 3.2 40 18-57 1-40 (44)
14 PLN03150 hypothetical protein; 98.4 4.6E-07 1E-11 91.9 6.4 84 19-102 419-507 (623)
15 KOG0472 Leucine-rich repeat pr 98.4 2E-08 4.2E-13 93.1 -3.2 78 3-83 147-224 (565)
16 PF14580 LRR_9: Leucine-rich r 98.3 6.9E-07 1.5E-11 75.6 5.5 111 5-123 9-124 (175)
17 KOG0618 Serine/threonine phosp 98.3 4.2E-08 9.1E-13 99.1 -2.2 94 3-98 393-489 (1081)
18 PF14580 LRR_9: Leucine-rich r 98.3 5.5E-07 1.2E-11 76.2 4.0 89 3-96 29-124 (175)
19 PRK15387 E3 ubiquitin-protein 98.3 1.5E-06 3.2E-11 89.3 7.3 61 3-73 211-271 (788)
20 KOG4237 Extracellular matrix p 98.3 3.3E-08 7.3E-13 91.3 -4.4 62 20-81 69-132 (498)
21 PRK15387 E3 ubiquitin-protein 98.3 2.1E-06 4.5E-11 88.2 7.5 94 3-109 232-325 (788)
22 PF13855 LRR_8: Leucine rich r 98.2 9.4E-07 2E-11 61.3 3.1 50 3-53 11-61 (61)
23 PRK15370 E3 ubiquitin-protein 98.2 2.2E-06 4.8E-11 88.1 7.0 81 4-93 189-270 (754)
24 KOG4658 Apoptotic ATPase [Sign 98.2 6.9E-07 1.5E-11 93.3 2.3 88 6-94 560-651 (889)
25 KOG4194 Membrane glycoprotein 98.1 1.4E-06 3.1E-11 84.5 3.0 90 3-94 88-182 (873)
26 KOG0532 Leucine-rich repeat (L 98.1 5.1E-07 1.1E-11 87.2 -0.2 99 20-123 145-245 (722)
27 PRK15370 E3 ubiquitin-protein 98.1 8.3E-06 1.8E-10 84.0 8.0 91 2-102 208-299 (754)
28 KOG0618 Serine/threonine phosp 98.1 6.2E-07 1.3E-11 90.9 -0.9 81 14-95 379-462 (1081)
29 KOG4237 Extracellular matrix p 98.0 1.2E-06 2.7E-11 81.2 0.4 91 3-94 77-173 (498)
30 PF12799 LRR_4: Leucine Rich r 98.0 5.5E-06 1.2E-10 53.4 3.3 40 41-81 1-40 (44)
31 PRK15386 type III secretion pr 97.9 2E-05 4.4E-10 74.9 7.0 102 4-112 63-183 (426)
32 COG4886 Leucine-rich repeat (L 97.8 7.1E-06 1.5E-10 78.7 2.0 90 3-95 126-219 (394)
33 KOG0532 Leucine-rich repeat (L 97.8 1.8E-06 3.9E-11 83.5 -2.2 77 3-82 153-251 (722)
34 KOG4658 Apoptotic ATPase [Sign 97.7 2.4E-05 5.1E-10 82.0 3.8 110 3-116 533-649 (889)
35 COG4886 Leucine-rich repeat (L 97.7 1.7E-05 3.6E-10 76.1 2.3 86 2-90 149-234 (394)
36 KOG1259 Nischarin, modulator o 97.7 9.1E-06 2E-10 73.2 0.1 75 18-94 284-361 (490)
37 KOG4579 Leucine-rich repeat (L 97.6 5.7E-06 1.2E-10 66.3 -2.3 78 16-94 51-129 (177)
38 KOG1259 Nischarin, modulator o 97.6 1.7E-05 3.8E-10 71.4 0.2 115 3-123 294-410 (490)
39 PRK15386 type III secretion pr 97.4 0.0003 6.6E-09 67.0 6.2 87 17-112 51-138 (426)
40 KOG0531 Protein phosphatase 1, 97.1 0.0002 4.4E-09 69.3 2.1 81 14-96 91-173 (414)
41 cd00116 LRR_RI Leucine-rich re 97.1 0.0003 6.5E-09 65.0 2.7 79 18-96 108-204 (319)
42 cd00116 LRR_RI Leucine-rich re 97.0 0.00014 3.1E-09 67.2 -0.2 88 7-96 72-176 (319)
43 KOG4579 Leucine-rich repeat (L 97.0 7.1E-05 1.5E-09 60.1 -1.9 77 19-96 28-111 (177)
44 KOG0531 Protein phosphatase 1, 96.9 0.00026 5.7E-09 68.5 0.1 90 2-95 104-196 (414)
45 PF00560 LRR_1: Leucine Rich R 96.8 0.00042 9.2E-09 37.4 0.5 19 43-61 2-20 (22)
46 KOG1859 Leucine-rich repeat pr 96.6 9.4E-05 2E-09 73.8 -4.8 61 20-82 166-226 (1096)
47 PF00560 LRR_1: Leucine Rich R 96.6 0.00066 1.4E-08 36.7 0.3 22 19-40 1-22 (22)
48 KOG1859 Leucine-rich repeat pr 96.4 0.00017 3.7E-09 72.0 -4.8 117 1-124 172-291 (1096)
49 KOG1644 U2-associated snRNP A' 96.2 0.008 1.7E-07 51.6 4.8 76 18-95 42-123 (233)
50 KOG2739 Leucine-rich acidic nu 96.1 0.0034 7.3E-08 55.7 2.4 81 17-98 42-129 (260)
51 KOG3665 ZYG-1-like serine/thre 96.1 0.0044 9.5E-08 63.6 3.6 80 15-95 170-260 (699)
52 KOG1644 U2-associated snRNP A' 95.8 0.015 3.2E-07 50.0 4.6 53 41-94 42-97 (233)
53 PF13504 LRR_7: Leucine rich r 95.6 0.0065 1.4E-07 30.5 1.2 14 43-56 3-16 (17)
54 PF13504 LRR_7: Leucine rich r 95.3 0.011 2.3E-07 29.7 1.3 17 18-34 1-17 (17)
55 KOG2739 Leucine-rich acidic nu 94.8 0.023 4.9E-07 50.5 2.7 60 17-76 64-128 (260)
56 KOG3207 Beta-tubulin folding c 94.7 0.013 2.9E-07 55.6 1.3 58 17-74 245-311 (505)
57 KOG3665 ZYG-1-like serine/thre 94.6 0.022 4.8E-07 58.5 2.7 81 16-98 146-233 (699)
58 PF13306 LRR_5: Leucine rich r 94.4 0.15 3.2E-06 40.2 6.5 81 7-92 2-88 (129)
59 smart00370 LRR Leucine-rich re 94.4 0.034 7.5E-07 31.0 2.0 20 40-59 1-20 (26)
60 smart00369 LRR_TYP Leucine-ric 94.4 0.034 7.5E-07 31.0 2.0 20 40-59 1-20 (26)
61 KOG2123 Uncharacterized conser 94.4 0.0054 1.2E-07 55.1 -2.1 54 18-73 19-72 (388)
62 KOG3207 Beta-tubulin folding c 94.0 0.02 4.4E-07 54.4 0.8 81 16-96 119-208 (505)
63 smart00369 LRR_TYP Leucine-ric 93.3 0.059 1.3E-06 30.0 1.6 21 17-37 1-21 (26)
64 smart00370 LRR Leucine-rich re 93.3 0.059 1.3E-06 30.0 1.6 21 17-37 1-21 (26)
65 KOG2120 SCF ubiquitin ligase, 92.9 0.015 3.3E-07 52.8 -1.7 57 60-118 309-369 (419)
66 KOG0473 Leucine-rich repeat pr 91.0 0.0033 7.2E-08 55.0 -7.9 76 14-90 38-113 (326)
67 KOG2982 Uncharacterized conser 90.2 0.18 4E-06 46.0 2.1 54 17-73 70-130 (418)
68 KOG1909 Ran GTPase-activating 89.8 0.19 4.1E-06 46.7 1.9 80 16-96 155-252 (382)
69 KOG0473 Leucine-rich repeat pr 89.1 0.013 2.7E-07 51.5 -5.9 62 14-75 61-122 (326)
70 KOG2123 Uncharacterized conser 88.9 0.022 4.8E-07 51.3 -4.6 68 14-82 37-106 (388)
71 PF13306 LRR_5: Leucine rich r 88.7 0.92 2E-05 35.5 5.0 74 4-82 22-97 (129)
72 KOG1909 Ran GTPase-activating 87.1 0.19 4.1E-06 46.7 0.1 83 14-96 181-281 (382)
73 smart00364 LRR_BAC Leucine-ric 86.0 0.43 9.3E-06 26.7 1.1 17 42-58 3-19 (26)
74 smart00364 LRR_BAC Leucine-ric 85.8 0.46 1E-05 26.6 1.1 18 18-35 2-19 (26)
75 KOG2120 SCF ubiquitin ligase, 85.0 0.051 1.1E-06 49.5 -4.6 79 19-97 186-272 (419)
76 KOG2982 Uncharacterized conser 84.0 0.4 8.7E-06 43.8 0.6 76 19-94 46-130 (418)
77 smart00365 LRR_SD22 Leucine-ri 82.0 0.99 2.1E-05 25.3 1.5 17 40-56 1-17 (26)
78 COG5238 RNA1 Ran GTPase-activa 78.0 0.9 2E-05 41.1 0.7 81 16-96 28-131 (388)
79 PF13516 LRR_6: Leucine Rich r 69.6 2 4.3E-05 23.2 0.5 14 41-54 2-15 (24)
80 KOG3864 Uncharacterized conser 65.6 1.8 3.8E-05 37.5 -0.4 78 19-96 102-187 (221)
81 smart00368 LRR_RI Leucine rich 64.2 4.9 0.00011 22.7 1.5 14 41-54 2-15 (28)
82 KOG3864 Uncharacterized conser 61.2 2.6 5.7E-05 36.4 -0.1 70 32-101 92-167 (221)
83 KOG3763 mRNA export factor TAP 58.1 5.2 0.00011 39.7 1.3 76 16-92 216-308 (585)
84 smart00367 LRR_CC Leucine-rich 49.5 12 0.00025 20.5 1.4 13 64-76 2-14 (26)
85 COG5238 RNA1 Ran GTPase-activa 49.4 29 0.00063 31.8 4.4 41 15-55 89-134 (388)
86 KOG1947 Leucine rich repeat pr 46.0 10 0.00022 36.7 1.3 85 14-98 210-308 (482)
87 TIGR00864 PCC polycystin catio 39.7 19 0.00042 42.5 2.3 26 3-29 5-30 (2740)
88 KOG1947 Leucine rich repeat pr 39.4 16 0.00035 35.3 1.5 81 17-97 187-281 (482)
89 KOG4341 F-box protein containi 30.6 19 0.00042 34.7 0.4 59 17-75 293-357 (483)
90 TIGR00864 PCC polycystin catio 27.7 37 0.0008 40.4 2.0 31 24-54 1-32 (2740)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=7.2e-26 Score=242.35 Aligned_cols=275 Identities=23% Similarity=0.328 Sum_probs=172.0
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCC-CCccCccccCC---------------------CCCcEEEeecCCCccCchh
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCG-LTAIPQEIGCL---------------------SSLKELDICENNFESLPAS 59 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~-l~~lP~~i~~l---------------------~~L~~L~Ls~n~l~~lP~~ 59 (339)
|+.+..+|.. ++++++|+.|+|++|. +..+|..+ ++ ++|+.|+|++|.++.+|.+
T Consensus 788 n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s 864 (1153)
T PLN03210 788 IPSLVELPSS--IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW 864 (1153)
T ss_pred CCCccccChh--hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHH
Confidence 4556666766 6677777777777663 44465543 23 3556666666677777877
Q ss_pred hhcCccCcEEEcccCCCCccCCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCCCCCcchhhhcccc
Q 037889 60 IMQLSRLTYLYLSKCNMLLSLPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSS 136 (339)
Q Consensus 60 i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 136 (339)
+..+++|+.|+|++|+.+..+|..+ .+|+.|++.+|.+|+.++...... ... .+..+. ....+..
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~-~~~-----~~~~n~------~~~~p~~ 932 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPS-EVA-----MATDNI------HSKLPST 932 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCch-hhh-----hhcccc------cccCCch
Confidence 8888888888888888888777654 456666777887776544311100 000 000000 0011123
Q ss_pred chhhccCcCCCChHHhhhhhhhhHHHHHHHHHHhHhhhccCCCCCCCCcc-EEEecCCCcccccccCCCCceeE-EecCC
Q 037889 137 IEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGP-IIVLPGSEIPEWFSNQSSGSQIT-LQLPQ 214 (339)
Q Consensus 137 ~~l~~~nc~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~pG~~iP~Wf~~qs~g~si~-i~lp~ 214 (339)
..+.|.||.+|++.+.... + ... .+.+||.++|+||+||+.|++++ |.+|+
T Consensus 933 ~~l~f~nC~~L~~~a~l~~--------~-------------------~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~ 985 (1153)
T PLN03210 933 VCINFINCFNLDQEALLQQ--------Q-------------------SIFKQLILSGEEVPSYFTHRTTGASLTNIPLLH 985 (1153)
T ss_pred hccccccccCCCchhhhcc--------c-------------------ccceEEECCCccCchhccCCcccceeeeeccCC
Confidence 3456899999987553110 0 112 67899999999999999999998 99999
Q ss_pred CCC-CCCCcceEEEEEeecCCC--CCceeeEEEEEEEEeccCCCceeeeeeecccee-ecCCceEEEEEecCCCcCCC--
Q 037889 215 HCC-QNLAGFALCAVLERSDSE--WAEFDVGCRYSFEMKTLSGRKHVRRCCVMASYQ-ITKTDHVMLGFRPCGNVGFP-- 288 (339)
Q Consensus 215 ~~~-~~~~gfa~C~v~~~~~~~--~~~~~~~c~~~~~~~~~~g~~~~~~~~~~~~~~-~~~sdHl~l~~~~~~~~~~~-- 288 (339)
.|. ..+.||++|+|++++... ...+.+.|.|+|+ +..|...... +..+.+. ...++|+++|..... ....
T Consensus 986 ~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 1061 (1153)
T PLN03210 986 ISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFI--DRLGNHFDSP-YQPHVFSVTKKGSHLVIFDCCFP-LNEDNA 1061 (1153)
T ss_pred cccCCCccceEEEEEEecCccccCCCceeEEEEEEEE--CCCCCccccC-CCceeEeeeccccceEEeccccc-cccccc
Confidence 999 789999999999877632 2356788888888 6666432211 1111222 235677776644321 1111
Q ss_pred -C-CCCceeEEEEEe--eC-CCccEEeeecEEEEeCCcc
Q 037889 289 -D-DNLHTTVSFNFF--SN-SDTAVTCCGVCAVCKSQRE 322 (339)
Q Consensus 289 -~-~~~~~~~~~~f~--~~-~~~~vk~cGv~liy~~~~~ 322 (339)
. +-..++++|+|. .. ...+||+|||+++|+++..
T Consensus 1062 ~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1062 PLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred chhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCc
Confidence 1 112367777773 32 3369999999999966544
No 2
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=1.9e-12 Score=106.69 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=93.4
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCC-ccC
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNML-LSL 80 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l-~~l 80 (339)
.|+|+.+|+. +..+.+|+.|++.+|+|+++|.+++.|+.|+.|+++.|++..+|.+|+.++.|+.|||.+|+.. ..+
T Consensus 42 HNKl~~vppn--ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~l 119 (264)
T KOG0617|consen 42 HNKLTVVPPN--IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSL 119 (264)
T ss_pred cCceeecCCc--HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccC
Confidence 5789999999 7999999999999999999999999999999999999999999999999999999999998765 468
Q ss_pred CCCCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 81 PELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 81 P~~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
|..+-.++.|.+...... .+...|..++++..+++..+..+.
T Consensus 120 pgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 120 PGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred CcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCc
Confidence 876644443333322221 134455666777766666655544
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.96 E-value=2.4e-11 Score=100.24 Aligned_cols=79 Identities=30% Similarity=0.476 Sum_probs=43.6
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCc--cCchhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFE--SLPASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~--~lP~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+|+.+|.+ ++.|+.|+.|++.-|++..+|..|+.++.|+.|||++|++. .+|..|..|+.|+.|+|++ +-.+.+
T Consensus 66 nqie~lp~~--issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~l 142 (264)
T KOG0617|consen 66 NQIEELPTS--ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEIL 142 (264)
T ss_pred chhhhcChh--hhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccC
Confidence 455666666 55666666666666666666666666666666666665554 3455555555555555554 333444
Q ss_pred CCCC
Q 037889 81 PELS 84 (339)
Q Consensus 81 P~~~ 84 (339)
|.-.
T Consensus 143 p~dv 146 (264)
T KOG0617|consen 143 PPDV 146 (264)
T ss_pred Chhh
Confidence 4433
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=4e-09 Score=73.42 Aligned_cols=58 Identities=40% Similarity=0.622 Sum_probs=52.8
Q ss_pred CCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCC
Q 037889 18 SSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCN 75 (339)
Q Consensus 18 ~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~ 75 (339)
++|++|++++|+|+++|. .|.++++|++|++++|.++.+| ..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999999875 6899999999999999999987 578999999999999975
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.76 E-value=7e-09 Score=110.63 Aligned_cols=89 Identities=31% Similarity=0.433 Sum_probs=61.0
Q ss_pred ccCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCCC
Q 037889 7 TIPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS 84 (339)
Q Consensus 7 ~lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~ 84 (339)
.+|.. ++++++|++|+|++|.+.+ +|..++++++|++|+|++|.+. .+|..++.+++|++|+|++|+..+.+|..+
T Consensus 155 ~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 155 EIPND--IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred cCChH--HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence 45666 6777777777777777764 6777777777777777777766 566777777777777777766666666533
Q ss_pred ---CCCCEEecccCcC
Q 037889 85 ---LSLKWLDASNCKR 97 (339)
Q Consensus 85 ---~~L~~L~~~~~~~ 97 (339)
.+|+.|++.+|..
T Consensus 233 ~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 233 GGLTSLNHLDLVYNNL 248 (968)
T ss_pred hcCCCCCEEECcCcee
Confidence 4566666665543
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.74 E-value=7.7e-09 Score=110.28 Aligned_cols=87 Identities=32% Similarity=0.530 Sum_probs=67.0
Q ss_pred CCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCCC---CCCCEE
Q 037889 16 GLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS---LSLKWL 90 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~~L 90 (339)
.+++|++|+|++|.+.. +|..++++++|++|+|++|.+. .+|..++++++|++|+|++|...+.+|..+ .+|+.|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 57788888888888875 7888888888888888888876 678888888888888888888877888644 567777
Q ss_pred ecccCcCCCcCC
Q 037889 91 DASNCKRLQSLP 102 (339)
Q Consensus 91 ~~~~~~~l~~l~ 102 (339)
++.++.....++
T Consensus 218 ~L~~n~l~~~~p 229 (968)
T PLN00113 218 YLGYNNLSGEIP 229 (968)
T ss_pred ECcCCccCCcCC
Confidence 777665433333
No 7
>PLN03150 hypothetical protein; Provisional
Probab=98.70 E-value=3e-08 Score=100.51 Aligned_cols=75 Identities=33% Similarity=0.542 Sum_probs=44.3
Q ss_pred ccCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCC
Q 037889 7 TIPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPEL 83 (339)
Q Consensus 7 ~lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~ 83 (339)
.+|+. +..+++|+.|+|++|.+.+ +|..++.+++|+.|+|++|+++ .+|..++.|++|+.|+|++|+..+.+|..
T Consensus 433 ~ip~~--i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 433 FIPND--ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred cCCHH--HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 34444 4555666666666666654 5656666666666666666655 45555666666666666666555566554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.66 E-value=2.3e-09 Score=99.19 Aligned_cols=112 Identities=37% Similarity=0.456 Sum_probs=88.1
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhh-cCccCcEEEcccCCCCccCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM-QLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~-~l~~L~~L~L~~c~~l~~lP 81 (339)
|-|+++|+. ++.|.+|..|+|..|.|..+| +|++.+.|..|+++.|.++.+|+.+. +|.+|..|||.+ +++++.|
T Consensus 193 N~L~tlP~~--lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~P 268 (565)
T KOG0472|consen 193 NLLETLPPE--LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVP 268 (565)
T ss_pred hhhhcCChh--hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCc
Confidence 557888888 788888888899988888888 78888888888888888888888777 899999999998 6677888
Q ss_pred CCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 82 ELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 82 ~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
..+ .+|.+|+++++. +...|.+++++ .+.+..+..++
T Consensus 269 de~clLrsL~rLDlSNN~----is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNND----ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hHHHHhhhhhhhcccCCc----cccCCcccccc-eeeehhhcCCc
Confidence 754 567778887743 55566777777 66666555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.65 E-value=2.7e-09 Score=103.58 Aligned_cols=88 Identities=26% Similarity=0.402 Sum_probs=70.5
Q ss_pred CCCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCC-Ccc
Q 037889 1 GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM-LLS 79 (339)
Q Consensus 1 gCn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~-l~~ 79 (339)
.||+|..+|+. +-++.+|+.|+||+|.|+++--..+.+.+|++|+||+|+++.+|+.+.+|++|+.|.+.+|+. ...
T Consensus 230 S~N~Lp~vPec--ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 230 SENNLPIVPEC--LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred cccCCCcchHH--HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccC
Confidence 47888888888 778888999999999888887778888888888888888888888888888888888887654 345
Q ss_pred CCCCCCCCCEE
Q 037889 80 LPELSLSLKWL 90 (339)
Q Consensus 80 lP~~~~~L~~L 90 (339)
+|..+++|..|
T Consensus 308 iPSGIGKL~~L 318 (1255)
T KOG0444|consen 308 IPSGIGKLIQL 318 (1255)
T ss_pred Cccchhhhhhh
Confidence 77766554443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.64 E-value=3.9e-09 Score=102.45 Aligned_cols=71 Identities=30% Similarity=0.326 Sum_probs=42.6
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCN 75 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~ 75 (339)
|+|+..|.. +.+-+++-+|+||+|+|..||.+ +-+|+.|-+||||+|+++.+|+.+..|..|++|+|++|.
T Consensus 113 NqL~EvP~~--LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 113 NQLREVPTN--LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred hhhhhcchh--hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence 455555555 55555555666666666666554 345666666666666666666666666666666666654
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.58 E-value=1.8e-07 Score=101.41 Aligned_cols=101 Identities=34% Similarity=0.543 Sum_probs=72.5
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCC-CCccCccccCCCCCcEEEeecCC-CccCchhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCG-LTAIPQEIGCLSSLKELDICENN-FESLPASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~-l~~lP~~i~~l~~L~~L~Ls~n~-l~~lP~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
++|+.+|.. +..+++|+.|+|+++. ++.+|. ++.+++|+.|+|++|. +..+|.+++.+++|+.|++++|+.++.+
T Consensus 621 s~l~~L~~~--~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 621 SKLEKLWDG--VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred ccccccccc--cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 445666666 5667777777777654 555664 6677777788877764 6678888888888888888888888888
Q ss_pred CCC--CCCCCEEecccCcCCCcCCCCCC
Q 037889 81 PEL--SLSLKWLDASNCKRLQSLPEIPS 106 (339)
Q Consensus 81 P~~--~~~L~~L~~~~~~~l~~l~~~~~ 106 (339)
|.. +.+|+.|++++|..++.+|..+.
T Consensus 698 p~~i~l~sL~~L~Lsgc~~L~~~p~~~~ 725 (1153)
T PLN03210 698 PTGINLKSLYRLNLSGCSRLKSFPDIST 725 (1153)
T ss_pred CCcCCCCCCCEEeCCCCCCccccccccC
Confidence 864 46788888888877766665443
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.48 E-value=8.3e-08 Score=92.77 Aligned_cols=112 Identities=22% Similarity=0.320 Sum_probs=67.9
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
|.|.++|... |..=.++++|+|++|.|+.+ -..|..+.+|..|.|++|+++.+| ..|.+|++|+.|+|..|. ++..
T Consensus 159 N~is~i~~~s-fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-iriv 236 (873)
T KOG4194|consen 159 NLISEIPKPS-FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIV 236 (873)
T ss_pred chhhcccCCC-CCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeee
Confidence 4555666654 44445677777777777775 345777777777777777777777 455567778877777743 2221
Q ss_pred CCCCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 81 PELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 81 P~~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
+.|.+.++.+++.+....+.+.+|+...|..+.++.
T Consensus 237 -------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 237 -------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred -------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 233444555555555555555555555555444443
No 13
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.46 E-value=1.5e-07 Score=60.71 Aligned_cols=40 Identities=28% Similarity=0.556 Sum_probs=29.7
Q ss_pred CCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCc
Q 037889 18 SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP 57 (339)
Q Consensus 18 ~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP 57 (339)
++|++|++++|+|+++|..+++|++|+.|++++|+|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3677888888888888777888888888888888877665
No 14
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=4.6e-07 Score=91.95 Aligned_cols=84 Identities=29% Similarity=0.416 Sum_probs=73.7
Q ss_pred CccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCCC---CCCCEEecc
Q 037889 19 SLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS---LSLKWLDAS 93 (339)
Q Consensus 19 ~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~~L~~~ 93 (339)
.++.|+|++|.+.+ +|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|+..+.+|+.+ .+|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999997 8999999999999999999998 899999999999999999999999999854 678888888
Q ss_pred cCcCCCcCC
Q 037889 94 NCKRLQSLP 102 (339)
Q Consensus 94 ~~~~l~~l~ 102 (339)
+|.....+|
T Consensus 499 ~N~l~g~iP 507 (623)
T PLN03150 499 GNSLSGRVP 507 (623)
T ss_pred CCcccccCC
Confidence 876444444
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.39 E-value=2e-08 Score=93.09 Aligned_cols=78 Identities=36% Similarity=0.575 Sum_probs=44.7
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
|++.++|+. +.++.+|..|++.+|.++++|+..-+|+.|+.||...|.++.+|+.++.|.+|..|+|.+ +.+..+|+
T Consensus 147 N~i~slp~~--~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe 223 (565)
T KOG0472|consen 147 NQISSLPED--MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLPE 223 (565)
T ss_pred cccccCchH--HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCCC
Confidence 455555555 445555555555555555555544445666666666666666666666666666666665 34455554
Q ss_pred C
Q 037889 83 L 83 (339)
Q Consensus 83 ~ 83 (339)
.
T Consensus 224 f 224 (565)
T KOG0472|consen 224 F 224 (565)
T ss_pred C
Confidence 3
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.35 E-value=6.9e-07 Score=75.64 Aligned_cols=111 Identities=28% Similarity=0.340 Sum_probs=32.6
Q ss_pred CcccCCcCcCCCCCCccEEEeecCCCCccCcccc-CCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC-
Q 037889 5 LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIG-CLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE- 82 (339)
Q Consensus 5 L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~-~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~- 82 (339)
|+..|.. .+...+++|+|++|.|+.|. .++ .+.+|+.|+|++|.++.++ .+..+++|+.|++++|. +..+++
T Consensus 9 i~~~~~~---~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 9 IEQIAQY---NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHH
T ss_pred ccccccc---cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccc
Confidence 4444443 45567888999999888874 455 5788899999999988886 57788889999998754 444542
Q ss_pred ---CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 83 ---LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 83 ---~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
.+++|+.|++.++. +..+.. ...++.++.+....+..++
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~-l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNE-LEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCC-CGGGGG-TT--EEE-TT-G
T ss_pred hHHhCCcCCEEECcCCc-CCChHH-hHHHHcCCCcceeeccCCc
Confidence 35688888887654 222322 2445556666666666565
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.35 E-value=4.2e-08 Score=99.10 Aligned_cols=94 Identities=37% Similarity=0.510 Sum_probs=56.2
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCc-cCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLL-SLP 81 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~-~lP 81 (339)
|+|.+||+.. +.++..|+.|+||||.++.+|+.+..+..|++|...+|.+..+| .+..++.|+.+||+.|+... .+|
T Consensus 393 NrL~~fpas~-~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 393 NRLNSFPASK-LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred cccccCCHHH-HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhh
Confidence 4555555554 55555555555555555555555555555555555555565566 56667777777777654432 344
Q ss_pred CC-C-CCCCEEecccCcCC
Q 037889 82 EL-S-LSLKWLDASNCKRL 98 (339)
Q Consensus 82 ~~-~-~~L~~L~~~~~~~l 98 (339)
+. + ++|++|+++++..+
T Consensus 471 ~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 471 EALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhCCCcccceeeccCCccc
Confidence 32 3 57788888777653
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.31 E-value=5.5e-07 Score=76.25 Aligned_cols=89 Identities=29% Similarity=0.386 Sum_probs=37.2
Q ss_pred CCCcccCCcCcCC-CCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhh-cCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSS-GLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM-QLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~-~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~-~l~~L~~L~L~~c~~l~~l 80 (339)
++|+.+.. ++ .+.+|+.|+|++|.|+.++ .+..++.|+.|++++|.++++++.+. .+++|+.|+|++|+ +..+
T Consensus 29 n~I~~Ie~---L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l 103 (175)
T PF14580_consen 29 NQISTIEN---LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK-ISDL 103 (175)
T ss_dssp -------S-----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SC
T ss_pred cccccccc---hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc-CCCh
Confidence 34555543 44 5789999999999999986 48889999999999999999986664 69999999999854 4444
Q ss_pred CCC-----CCCCCEEecccCc
Q 037889 81 PEL-----SLSLKWLDASNCK 96 (339)
Q Consensus 81 P~~-----~~~L~~L~~~~~~ 96 (339)
-+. +++|+.|++.+++
T Consensus 104 ~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 104 NELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp CCCGGGGG-TT--EEE-TT-G
T ss_pred HHhHHHHcCCCcceeeccCCc
Confidence 332 4667777777655
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.29 E-value=1.5e-06 Score=89.28 Aligned_cols=61 Identities=25% Similarity=0.365 Sum_probs=40.7
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEccc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSK 73 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~ 73 (339)
++|+++|+. +. .+|+.|++++|+|+.+|.. +++|++|+|++|+|+.+|..+ ++|+.|+|++
T Consensus 211 ~~LtsLP~~--l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp---~sL~~L~Ls~ 271 (788)
T PRK15387 211 SGLTTLPDC--LP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLP---PGLLELSIFS 271 (788)
T ss_pred CCCCcCCcc--hh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcc---cccceeeccC
Confidence 567888887 33 4677888888888877753 467788888888777776422 3444444444
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.27 E-value=3.3e-08 Score=91.34 Aligned_cols=62 Identities=27% Similarity=0.420 Sum_probs=29.3
Q ss_pred ccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccCC
Q 037889 20 LDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 20 L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
-..+.|..|.|+.||+ +|+.+++|+.||||.|+|+.| |+.|..|.+|..|-+-++++++.+|
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 3344444555555433 244455555555555555444 3444445444444444444444444
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.25 E-value=2.1e-06 Score=88.21 Aligned_cols=94 Identities=37% Similarity=0.483 Sum_probs=69.1
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
|+|+.+|.. +++|++|+|++|+|+.+|.. .++|+.|++++|.++.+|... .+|+.|+|++| .+..+|.
T Consensus 232 N~Lt~LP~l-----p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~ 299 (788)
T PRK15387 232 NNLTSLPAL-----PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGN-QLTSLPV 299 (788)
T ss_pred CcCCCCCCC-----CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCC-ccccccc
Confidence 677778764 47888999999998888864 357888888888888887533 56778888885 4567888
Q ss_pred CCCCCCEEecccCcCCCcCCCCCCCcc
Q 037889 83 LSLSLKWLDASNCKRLQSLPEIPSSLE 109 (339)
Q Consensus 83 ~~~~L~~L~~~~~~~l~~l~~~~~~l~ 109 (339)
.+++|+.|+++++ .+..++..|..+.
T Consensus 300 ~p~~L~~LdLS~N-~L~~Lp~lp~~L~ 325 (788)
T PRK15387 300 LPPGLQELSVSDN-QLASLPALPSELC 325 (788)
T ss_pred cccccceeECCCC-ccccCCCCccccc
Confidence 7788888888876 4455555544443
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=9.4e-07 Score=61.31 Aligned_cols=50 Identities=38% Similarity=0.595 Sum_probs=45.8
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNF 53 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l 53 (339)
|+|+.+|+.. |.++++|++|++++|.|+.+| ..|.++++|++|++++|+|
T Consensus 11 n~l~~i~~~~-f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 11 NKLTEIPPDS-FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp STESEECTTT-TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CCCCccCHHH-HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 6899999887 999999999999999999975 5799999999999999975
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.22 E-value=2.2e-06 Score=88.12 Aligned_cols=81 Identities=30% Similarity=0.415 Sum_probs=39.4
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL 83 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~ 83 (339)
+|+.+|..+ .++|+.|+|++|.|+.+|..+. .+|+.|++++|+|+.+|..+. .+|+.|+|++|+. ..+|..
T Consensus 189 ~LtsLP~~I----p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L-~~LP~~ 259 (754)
T PRK15370 189 GLTTIPACI----PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI-TELPER 259 (754)
T ss_pred CcCcCCccc----ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCcc-CcCChh
Confidence 455555542 2355566666666666655443 355555555555555554332 2344555554332 233332
Q ss_pred -CCCCCEEecc
Q 037889 84 -SLSLKWLDAS 93 (339)
Q Consensus 84 -~~~L~~L~~~ 93 (339)
+.+|+.|+++
T Consensus 260 l~s~L~~L~Ls 270 (754)
T PRK15370 260 LPSALQSLDLF 270 (754)
T ss_pred HhCCCCEEECc
Confidence 2344444444
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.18 E-value=6.9e-07 Score=93.26 Aligned_cols=88 Identities=32% Similarity=0.491 Sum_probs=71.6
Q ss_pred cccCCcCcCCCCCCccEEEeecC-CCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC-
Q 037889 6 VTIPASILSSGLSSLDRLDLRGC-GLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL- 83 (339)
Q Consensus 6 ~~lP~~~~~~~l~~L~~L~Ls~n-~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~- 83 (339)
..++... |..|+.|++|||++| .+.++|.+|+.|-+|++|+|+++.+..+|.++++|..|.+|++..+..+..+|..
T Consensus 560 ~~is~~f-f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 560 LEISGEF-FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred hhcCHHH-HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchh
Confidence 3444443 677899999999977 4777999999999999999999999999999999999999999988888888764
Q ss_pred --CCCCCEEeccc
Q 037889 84 --SLSLKWLDASN 94 (339)
Q Consensus 84 --~~~L~~L~~~~ 94 (339)
+.+|++|.+..
T Consensus 639 ~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 639 LELQSLRVLRLPR 651 (889)
T ss_pred hhcccccEEEeec
Confidence 36777776654
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.12 E-value=1.4e-06 Score=84.45 Aligned_cols=90 Identities=24% Similarity=0.306 Sum_probs=56.7
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
|+|..+-... |.++.+|+.++|.+|.++.||.......+|+.|+|.+|.|.++- +++..++.|+.|||+.|. +..+|
T Consensus 88 Nkl~~id~~~-f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~ 165 (873)
T KOG4194|consen 88 NKLSHIDFEF-FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIP 165 (873)
T ss_pred cccccCcHHH-HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhccc
Confidence 4444443332 66777777888877777777776666666777777777777664 456667777777777743 33344
Q ss_pred C--CC--CCCCEEeccc
Q 037889 82 E--LS--LSLKWLDASN 94 (339)
Q Consensus 82 ~--~~--~~L~~L~~~~ 94 (339)
. .+ .++++|++++
T Consensus 166 ~~sfp~~~ni~~L~La~ 182 (873)
T KOG4194|consen 166 KPSFPAKVNIKKLNLAS 182 (873)
T ss_pred CCCCCCCCCceEEeecc
Confidence 2 12 2455555544
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.12 E-value=5.1e-07 Score=87.18 Aligned_cols=99 Identities=31% Similarity=0.442 Sum_probs=47.2
Q ss_pred ccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCCC--CCCCEEecccCcC
Q 037889 20 LDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELS--LSLKWLDASNCKR 97 (339)
Q Consensus 20 L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~--~~L~~L~~~~~~~ 97 (339)
|+.|.+++|+++.+|..++.+..|..||.+.|.+..+|+.++.+.+|+.|.+..|+ +..+|+.. -.|..|++++++
T Consensus 145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfScNk- 222 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFSCNK- 222 (722)
T ss_pred ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecccCc-
Confidence 33444444444444444444444444444444444444444444444444444422 22233222 235566766533
Q ss_pred CCcCCCCCCCccccccccccccCCCC
Q 037889 98 LQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 98 l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
+..+|..+.+|+.++...+.+++
T Consensus 223 ---is~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 223 ---ISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ---eeecchhhhhhhhheeeeeccCC
Confidence 23344556666666666666655
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.09 E-value=8.3e-06 Score=83.97 Aligned_cols=91 Identities=24% Similarity=0.424 Sum_probs=73.4
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
+|+|+.+|..+ .++|+.|+|++|+|+.+|..+. .+|+.|+|++|+++.+|..+. .+|+.|+|++| .+..+|
T Consensus 208 ~N~LtsLP~~l----~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP 278 (754)
T PRK15370 208 NNELKSLPENL----QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN-KISCLP 278 (754)
T ss_pred CCCCCcCChhh----ccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC-ccCccc
Confidence 57889999883 3589999999999999998764 479999999999999998775 58999999975 556788
Q ss_pred CC-CCCCCEEecccCcCCCcCC
Q 037889 82 EL-SLSLKWLDASNCKRLQSLP 102 (339)
Q Consensus 82 ~~-~~~L~~L~~~~~~~l~~l~ 102 (339)
.. +.+|+.|++++| .++.+|
T Consensus 279 ~~l~~sL~~L~Ls~N-~Lt~LP 299 (754)
T PRK15370 279 ENLPEELRYLSVYDN-SIRTLP 299 (754)
T ss_pred cccCCCCcEEECCCC-ccccCc
Confidence 74 468999999886 344444
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.06 E-value=6.2e-07 Score=90.88 Aligned_cols=81 Identities=35% Similarity=0.468 Sum_probs=72.0
Q ss_pred CCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCCC--CCCCEE
Q 037889 14 SSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELS--LSLKWL 90 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~--~~L~~L 90 (339)
+.++++|+.|+|++|+|..+|++ +.+|..|+.|+||||+++.||.++..+..|++|.... +.+..+|+.. +.|+.+
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~l 457 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVL 457 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEE
Confidence 56889999999999999999987 7899999999999999999999999999999998886 6777889753 788889
Q ss_pred ecccC
Q 037889 91 DASNC 95 (339)
Q Consensus 91 ~~~~~ 95 (339)
|++.+
T Consensus 458 DlS~N 462 (1081)
T KOG0618|consen 458 DLSCN 462 (1081)
T ss_pred ecccc
Confidence 88754
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.02 E-value=1.2e-06 Score=81.15 Aligned_cols=91 Identities=27% Similarity=0.330 Sum_probs=73.3
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeec-CCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICE-NNFESLP-ASIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~-n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~ 79 (339)
|+|+.||+.+ |+.+++|+.|||++|+|+.| |+.|.+|.+|..|-+-+ |+|+.+| ..|+.|..|+.|.+.-|+..-.
T Consensus 77 N~I~~iP~~a-F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 77 NQISSIPPGA-FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred CCcccCChhh-ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 7899999998 99999999999999999996 88999999988887766 9999999 5688999999999997554333
Q ss_pred CCCCC---CCCCEEeccc
Q 037889 80 LPELS---LSLKWLDASN 94 (339)
Q Consensus 80 lP~~~---~~L~~L~~~~ 94 (339)
..+.+ .++.-|.+.+
T Consensus 156 r~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYD 173 (498)
T ss_pred hHHHHHHhhhcchhcccc
Confidence 33333 3444445554
No 30
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=5.5e-06 Score=53.41 Aligned_cols=40 Identities=30% Similarity=0.504 Sum_probs=33.2
Q ss_pred CCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889 41 SSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 41 ~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
++|++|++++|+|+.+|+.+++|++|+.|++++|+ +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 57999999999999999889999999999999975 44444
No 31
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=2e-05 Score=74.88 Aligned_cols=102 Identities=26% Similarity=0.500 Sum_probs=55.8
Q ss_pred CCcccCCcCcCCCCCCccEEEeecC-CCCccCccccCCCCCcEEEeecC-CCccCchhhhcC--------------ccCc
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGC-GLTAIPQEIGCLSSLKELDICEN-NFESLPASIMQL--------------SRLT 67 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n-~l~~lP~~i~~l~~L~~L~Ls~n-~l~~lP~~i~~l--------------~~L~ 67 (339)
.|+++|.- ..+|+.|.+++| +++.+|..+. .+|+.|++++| .+..+|.++..| ++|+
T Consensus 63 ~L~sLP~L-----P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 63 DIESLPVL-----PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred CCcccCCC-----CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccceEEeCCCCCcccccCcchHh
Confidence 57777732 346778888774 4555776553 57777777777 566666543211 1233
Q ss_pred EEEcccCCCC--ccCCC-CCCCCCEEecccCcCCCcCCCCCCCccccc
Q 037889 68 YLYLSKCNML--LSLPE-LSLSLKWLDASNCKRLQSLPEIPSSLEEVD 112 (339)
Q Consensus 68 ~L~L~~c~~l--~~lP~-~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~ 112 (339)
.|.+.+++.. ..+|. +|.+|+.|++.+|......+.+|.++..|.
T Consensus 136 ~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ 183 (426)
T PRK15386 136 SLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSIT 183 (426)
T ss_pred heeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEE
Confidence 3333222111 11221 345777888888776543334565555554
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.84 E-value=7.1e-06 Score=78.70 Aligned_cols=90 Identities=33% Similarity=0.445 Sum_probs=47.7
Q ss_pred CCCcccCCcCcCCCCC-CccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889 3 RSLVTIPASILSSGLS-SLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~-~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
+.+..+|+. ...++ +|+.|++++|.+..+|..++.+++|+.|+++.|++..+|...+.++.|+.|++++ +.+..+|
T Consensus 126 n~i~~i~~~--~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~ 202 (394)
T COG4886 126 NNITDIPPL--IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLP 202 (394)
T ss_pred cccccCccc--cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-CccccCc
Confidence 444555554 33342 5556666666665555555556666666666666665555555555566666655 3344444
Q ss_pred CC---CCCCCEEecccC
Q 037889 82 EL---SLSLKWLDASNC 95 (339)
Q Consensus 82 ~~---~~~L~~L~~~~~ 95 (339)
.. +..|+.|.+.++
T Consensus 203 ~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 203 PEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhhhhhhhcCC
Confidence 42 233555555443
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.83 E-value=1.8e-06 Score=83.47 Aligned_cols=77 Identities=30% Similarity=0.481 Sum_probs=43.8
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCC----------------------CcEEEeecCCCccCchhh
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSS----------------------LKELDICENNFESLPASI 60 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~----------------------L~~L~Ls~n~l~~lP~~i 60 (339)
|+++.+|+. ++.+.+|..||.+.|.|..+|..++.+.+ |..||+|.|++..||-.|
T Consensus 153 Nkl~~lp~~--ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 153 NKLTSLPEE--IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred CccccCCcc--cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhh
Confidence 455555555 34455555555555555555555554444 555666666666666666
Q ss_pred hcCccCcEEEcccCCCCccCCC
Q 037889 61 MQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 61 ~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
.+|+.|++|-|.+ |.+++-|.
T Consensus 231 r~m~~Lq~l~Len-NPLqSPPA 251 (722)
T KOG0532|consen 231 RKMRHLQVLQLEN-NPLQSPPA 251 (722)
T ss_pred hhhhhheeeeecc-CCCCCChH
Confidence 6666666666653 55555554
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.72 E-value=2.4e-05 Score=81.97 Aligned_cols=110 Identities=31% Similarity=0.377 Sum_probs=82.1
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCC--CCccCcc-ccCCCCCcEEEeecCC-CccCchhhhcCccCcEEEcccCCCCc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCG--LTAIPQE-IGCLSSLKELDICENN-FESLPASIMQLSRLTYLYLSKCNMLL 78 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~--l~~lP~~-i~~l~~L~~L~Ls~n~-l~~lP~~i~~l~~L~~L~L~~c~~l~ 78 (339)
+++..++.. . ..+.|++|-+.+|. +..++.. |..++.|+.|||++|. +..+|.+|+.|-+|++|+|++ ....
T Consensus 533 ~~~~~~~~~--~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~ 608 (889)
T KOG4658|consen 533 NKIEHIAGS--S-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGIS 608 (889)
T ss_pred cchhhccCC--C-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCcc
Confidence 455556665 2 34479999998886 6666654 7789999999999875 789999999999999999998 5566
Q ss_pred cCCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccc
Q 037889 79 SLPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVF 116 (339)
Q Consensus 79 ~lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~ 116 (339)
.+|..+ .+|.+|++.....+..++.....+.+|+.+..
T Consensus 609 ~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 609 HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred ccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 889866 45667777777777766555555555555444
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.71 E-value=1.7e-05 Score=76.11 Aligned_cols=86 Identities=31% Similarity=0.417 Sum_probs=71.0
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
.|+++.+|.. +..++.|+.|++++|++..+|...+.+++|+.|++++|+++.+|..+..+..|+.|.+++|. ....|
T Consensus 149 ~N~i~~l~~~--~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~ 225 (394)
T COG4886 149 DNKIESLPSP--LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELL 225 (394)
T ss_pred ccchhhhhhh--hhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecc
Confidence 4678888766 78999999999999999999999889999999999999999999988888889999999865 33344
Q ss_pred CCCCCCCEE
Q 037889 82 ELSLSLKWL 90 (339)
Q Consensus 82 ~~~~~L~~L 90 (339)
.....+..+
T Consensus 226 ~~~~~~~~l 234 (394)
T COG4886 226 SSLSNLKNL 234 (394)
T ss_pred hhhhhcccc
Confidence 433333333
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.68 E-value=9.1e-06 Score=73.15 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=58.0
Q ss_pred CCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC---CCCCCCEEeccc
Q 037889 18 SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE---LSLSLKWLDASN 94 (339)
Q Consensus 18 ~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~---~~~~L~~L~~~~ 94 (339)
..|++|||++|.|+.+-++..-++.++.|++|.|++..+- ++..|++|+.|||++|. +..+-. -+++++.|.+..
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhh
Confidence 5788899999999999888888899999999999988776 48888999999999854 433333 245666665554
No 37
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.59 E-value=5.7e-06 Score=66.29 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=54.4
Q ss_pred CCCCccEEEeecCCCCccCccccCC-CCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCCCCCCCEEeccc
Q 037889 16 GLSSLDRLDLRGCGLTAIPQEIGCL-SSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASN 94 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~lP~~i~~l-~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~~~L~~L~~~~ 94 (339)
....|+..+|++|.++.+|..+... +.++.|+|++|.+..+|..+..++.|+.|+++. +.+...|..+..|..|+...
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhc
Confidence 3456667788888888888776543 477888888888888887788888888888886 44555666543355544433
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.57 E-value=1.7e-05 Score=71.38 Aligned_cols=115 Identities=22% Similarity=0.242 Sum_probs=79.0
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
|.|+.+.++ ..-++.++.|+++.|.|..+-. +..|.+|+.||||+|.++++-..-.+|-+.+.|.|+. +.++.+..
T Consensus 294 N~I~~iDES--vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSG 369 (490)
T KOG1259|consen 294 NLITQIDES--VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIETLSG 369 (490)
T ss_pred cchhhhhhh--hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhhhhh
Confidence 556666666 4556788888999888888755 8888888999999988887776666778888888887 55565554
Q ss_pred C--CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 83 L--SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 83 ~--~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
+ +.+|.+|++.++. .+.+.. -..+++|+.+....+..++
T Consensus 370 L~KLYSLvnLDl~~N~-Ie~lde-V~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQ-IEELDE-VNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hHhhhhheeccccccc-hhhHHH-hcccccccHHHHHhhcCCC
Confidence 3 3567777777643 222222 2456666666666665555
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.40 E-value=0.0003 Score=67.02 Aligned_cols=87 Identities=26% Similarity=0.490 Sum_probs=60.4
Q ss_pred CCCccEEEeecCCCCccCccccCCCCCcEEEeecC-CCccCchhhhcCccCcEEEcccCCCCccCCCCCCCCCEEecccC
Q 037889 17 LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICEN-NFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNC 95 (339)
Q Consensus 17 l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n-~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~~~L~~L~~~~~ 95 (339)
+.+++.|++++|.|+.+|. -..+|+.|.+++| .++.+|..+ .++|++|++++|..+..+|. +|+.|++.+
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~---sLe~L~L~~- 121 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE---SVRSLEIKG- 121 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc---ccceEEeCC-
Confidence 5778899999999998883 2357999999874 577888655 35899999999877766665 466666543
Q ss_pred cCCCcCCCCCCCccccc
Q 037889 96 KRLQSLPEIPSSLEEVD 112 (339)
Q Consensus 96 ~~l~~l~~~~~~l~~l~ 112 (339)
..+..++..|.+|..|.
T Consensus 122 n~~~~L~~LPssLk~L~ 138 (426)
T PRK15386 122 SATDSIKNVPNGLTSLS 138 (426)
T ss_pred CCCcccccCcchHhhee
Confidence 33334555555555443
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.14 E-value=0.0002 Score=69.27 Aligned_cols=81 Identities=33% Similarity=0.384 Sum_probs=63.0
Q ss_pred CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC--CCCCCEEe
Q 037889 14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL--SLSLKWLD 91 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~--~~~L~~L~ 91 (339)
+..+++|+.|++.+|.|+.+...+..+.+|+.|+|++|.|+.+. .+..++.|+.|++++ +.+..++.. +.+|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG-NLISDISGLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheecc-CcchhccCCccchhhhccc
Confidence 56678889999999999888777888899999999999988886 577778899999998 445555554 45666666
Q ss_pred cccCc
Q 037889 92 ASNCK 96 (339)
Q Consensus 92 ~~~~~ 96 (339)
++++.
T Consensus 169 l~~n~ 173 (414)
T KOG0531|consen 169 LSYNR 173 (414)
T ss_pred CCcch
Confidence 66654
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.10 E-value=0.0003 Score=65.01 Aligned_cols=79 Identities=28% Similarity=0.307 Sum_probs=57.9
Q ss_pred CCccEEEeecCCCCc-----cCccccCC-CCCcEEEeecCCCc-----cCchhhhcCccCcEEEcccCCCCc----cCCC
Q 037889 18 SSLDRLDLRGCGLTA-----IPQEIGCL-SSLKELDICENNFE-----SLPASIMQLSRLTYLYLSKCNMLL----SLPE 82 (339)
Q Consensus 18 ~~L~~L~Ls~n~l~~-----lP~~i~~l-~~L~~L~Ls~n~l~-----~lP~~i~~l~~L~~L~L~~c~~l~----~lP~ 82 (339)
++|++|++++|++.. +...+..+ ++|+.|+|++|.++ .++..+..+.+|+.|++++|.... .++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 349999999998873 34556677 88999999999887 345567777889999999877652 2332
Q ss_pred CC---CCCCEEecccCc
Q 037889 83 LS---LSLKWLDASNCK 96 (339)
Q Consensus 83 ~~---~~L~~L~~~~~~ 96 (339)
.+ .+|+.|++++|.
T Consensus 188 ~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 188 GLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHhCCCCCEEeccCCc
Confidence 22 478888888875
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.03 E-value=0.00014 Score=67.21 Aligned_cols=88 Identities=23% Similarity=0.215 Sum_probs=65.6
Q ss_pred ccCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCC---CcEEEeecCCCc-----cCchhhhcC-ccCcEEEcccCCC
Q 037889 7 TIPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSS---LKELDICENNFE-----SLPASIMQL-SRLTYLYLSKCNM 76 (339)
Q Consensus 7 ~lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~---L~~L~Ls~n~l~-----~lP~~i~~l-~~L~~L~L~~c~~ 76 (339)
.++.. +..+++|+.|++++|.+.. .+..+..+.+ |+.|++++|.+. .+...+..+ ++|+.|++++|..
T Consensus 72 ~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 72 SLLQG--LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHHHH--HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 34444 6678899999999999985 5555555555 999999999987 244567777 8999999999886
Q ss_pred Ccc----CCCCC---CCCCEEecccCc
Q 037889 77 LLS----LPELS---LSLKWLDASNCK 96 (339)
Q Consensus 77 l~~----lP~~~---~~L~~L~~~~~~ 96 (339)
... ++..+ .+|+.|++.+|.
T Consensus 150 ~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 150 EGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred CchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 632 22222 479999998865
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.03 E-value=7.1e-05 Score=60.12 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=53.5
Q ss_pred CccEEEeecCCCCccCcc---ccCCCCCcEEEeecCCCccCchhhhc-CccCcEEEcccCCCCccCCCC---CCCCCEEe
Q 037889 19 SLDRLDLRGCGLTAIPQE---IGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNMLLSLPEL---SLSLKWLD 91 (339)
Q Consensus 19 ~L~~L~Ls~n~l~~lP~~---i~~l~~L~~L~Ls~n~l~~lP~~i~~-l~~L~~L~L~~c~~l~~lP~~---~~~L~~L~ 91 (339)
.+..|+|+.|+|-.+++. +.....|...+|++|.|...|+.+.. .+.++.|+|++ +.+..+|+. ++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence 455678888887766654 44445566678888888888877764 45788888886 566677763 36677777
Q ss_pred cccCc
Q 037889 92 ASNCK 96 (339)
Q Consensus 92 ~~~~~ 96 (339)
+..++
T Consensus 107 l~~N~ 111 (177)
T KOG4579|consen 107 LRFNP 111 (177)
T ss_pred cccCc
Confidence 77654
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.87 E-value=0.00026 Score=68.51 Aligned_cols=90 Identities=26% Similarity=0.238 Sum_probs=68.2
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
.|+|+.+... +..+.+|++|+|++|.|+.+.. +..++.|+.|++++|.++.++ .+..++.|+.+++++|.....=+
T Consensus 104 ~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 104 DNKIEKIENL--LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred ccchhhcccc--hhhhhcchheeccccccccccc-hhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhhhhh
Confidence 3567777664 5679999999999999999744 667778999999999999887 56669999999999976655444
Q ss_pred ---CCCCCCCEEecccC
Q 037889 82 ---ELSLSLKWLDASNC 95 (339)
Q Consensus 82 ---~~~~~L~~L~~~~~ 95 (339)
....+++.+.+.++
T Consensus 180 ~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 180 DELSELISLEELDLGGN 196 (414)
T ss_pred hhhhhccchHHHhccCC
Confidence 33345555555443
No 45
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.79 E-value=0.00042 Score=37.45 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=10.1
Q ss_pred CcEEEeecCCCccCchhhh
Q 037889 43 LKELDICENNFESLPASIM 61 (339)
Q Consensus 43 L~~L~Ls~n~l~~lP~~i~ 61 (339)
|++|||++|+|+.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.64 E-value=9.4e-05 Score=73.83 Aligned_cols=61 Identities=25% Similarity=0.390 Sum_probs=30.6
Q ss_pred ccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 20 LDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 20 L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
|.+.+.++|++.-+-.++.-++.|+.|+|++|+++..- .+..+++|++|||++ |.++.+|.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~ 226 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQ 226 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccc
Confidence 33444455555544445555555555555555555443 444555555555555 34444443
No 47
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.57 E-value=0.00066 Score=36.68 Aligned_cols=22 Identities=45% Similarity=0.708 Sum_probs=18.9
Q ss_pred CccEEEeecCCCCccCccccCC
Q 037889 19 SLDRLDLRGCGLTAIPQEIGCL 40 (339)
Q Consensus 19 ~L~~L~Ls~n~l~~lP~~i~~l 40 (339)
+|++|+|++|+|+.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999987754
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.38 E-value=0.00017 Score=72.03 Aligned_cols=117 Identities=25% Similarity=0.226 Sum_probs=82.7
Q ss_pred CCCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCcc
Q 037889 1 GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 1 gCn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~ 79 (339)
.||.|+.+..+ +.-++.|+.|||+.|.+...- .+..++.|++|||++|.++.+|. +...+. |+.|.+++ |.+++
T Consensus 172 syN~L~~mD~S--Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~t 246 (1096)
T KOG1859|consen 172 SYNRLVLMDES--LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTT 246 (1096)
T ss_pred chhhHHhHHHH--HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecc-cHHHh
Confidence 37888888777 677889999999999999875 78899999999999999999994 233344 99999997 55665
Q ss_pred CCC--CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCCC
Q 037889 80 LPE--LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSH 124 (339)
Q Consensus 80 lP~--~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~~ 124 (339)
+-. .+.+|+.|+++++-..+... ...+..|..+....+..++.
T Consensus 247 L~gie~LksL~~LDlsyNll~~hse--L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 247 LRGIENLKSLYGLDLSYNLLSEHSE--LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhHHhhhhhhccchhHhhhhcchh--hhHHHHHHHHHHHhhcCCcc
Confidence 553 34677777777643222111 12233445555566666664
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.19 E-value=0.008 Score=51.56 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=52.1
Q ss_pred CCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhc-CccCcEEEcccCCCCccCCCC-----CCCCCEEe
Q 037889 18 SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNMLLSLPEL-----SLSLKWLD 91 (339)
Q Consensus 18 ~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~-l~~L~~L~L~~c~~l~~lP~~-----~~~L~~L~ 91 (339)
.+...+||++|.|..++. +..++.|.+|.|++|+|+.|-+.+.. +++|+.|.|.+|+ ++.+-++ .++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 356678888888877644 67788888888888888888666664 5678888888743 3333321 24566666
Q ss_pred cccC
Q 037889 92 ASNC 95 (339)
Q Consensus 92 ~~~~ 95 (339)
+.++
T Consensus 120 ll~N 123 (233)
T KOG1644|consen 120 LLGN 123 (233)
T ss_pred ecCC
Confidence 5554
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.0034 Score=55.71 Aligned_cols=81 Identities=28% Similarity=0.350 Sum_probs=47.4
Q ss_pred CCCccEEEeecCCCCccCccccCCCCCcEEEeecCC--Cc-cCchhhhcCccCcEEEcccCCCC--ccCCCC--CCCCCE
Q 037889 17 LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENN--FE-SLPASIMQLSRLTYLYLSKCNML--LSLPEL--SLSLKW 89 (339)
Q Consensus 17 l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~--l~-~lP~~i~~l~~L~~L~L~~c~~l--~~lP~~--~~~L~~ 89 (339)
+..|+.|.+.+..++.+ ..+..|++|+.|.+|.|. +. .++.....+++|++|+|++|+.. .+++.. ..+|..
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 44556666666655543 224456788888888883 33 44444555688888888875542 233322 245666
Q ss_pred EecccCcCC
Q 037889 90 LDASNCKRL 98 (339)
Q Consensus 90 L~~~~~~~l 98 (339)
|++.+|...
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 666666543
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.14 E-value=0.0044 Score=63.61 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=54.9
Q ss_pred CCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCc--hhhhcCccCcEEEcccCCCCccC---------CCC
Q 037889 15 SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP--ASIMQLSRLTYLYLSKCNMLLSL---------PEL 83 (339)
Q Consensus 15 ~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP--~~i~~l~~L~~L~L~~c~~l~~l---------P~~ 83 (339)
.++++|+.||+|+++++.+ ..+++|++|+.|.+.+=.|+.-. ..+.+|++|+.||+|.-+....- +..
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 4677888888888888877 66788888888887776666443 35678888888988864332221 123
Q ss_pred CCCCCEEecccC
Q 037889 84 SLSLKWLDASNC 95 (339)
Q Consensus 84 ~~~L~~L~~~~~ 95 (339)
++.|+.|+.++.
T Consensus 249 LpeLrfLDcSgT 260 (699)
T KOG3665|consen 249 LPELRFLDCSGT 260 (699)
T ss_pred CccccEEecCCc
Confidence 456777776654
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.77 E-value=0.015 Score=49.97 Aligned_cols=53 Identities=26% Similarity=0.385 Sum_probs=30.8
Q ss_pred CCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC---CCCCCEEeccc
Q 037889 41 SSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL---SLSLKWLDASN 94 (339)
Q Consensus 41 ~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~---~~~L~~L~~~~ 94 (339)
.+...+||+.|.+..++ .+..+++|.+|.|++|.....-|.+ .++|..|.+.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 34566667777666555 4556666777777665554444432 24556665555
No 53
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.63 E-value=0.0065 Score=30.53 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=4.9
Q ss_pred CcEEEeecCCCccC
Q 037889 43 LKELDICENNFESL 56 (339)
Q Consensus 43 L~~L~Ls~n~l~~l 56 (339)
|+.|+|++|+|+++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444443
No 54
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.28 E-value=0.011 Score=29.75 Aligned_cols=17 Identities=41% Similarity=0.645 Sum_probs=11.7
Q ss_pred CCccEEEeecCCCCccC
Q 037889 18 SSLDRLDLRGCGLTAIP 34 (339)
Q Consensus 18 ~~L~~L~Ls~n~l~~lP 34 (339)
++|+.|+|++|+|+++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999999887
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.75 E-value=0.023 Score=50.53 Aligned_cols=60 Identities=23% Similarity=0.385 Sum_probs=26.4
Q ss_pred CCCccEEEeecC--CCCc-cCccccCCCCCcEEEeecCCCccCc--hhhhcCccCcEEEcccCCC
Q 037889 17 LSSLDRLDLRGC--GLTA-IPQEIGCLSSLKELDICENNFESLP--ASIMQLSRLTYLYLSKCNM 76 (339)
Q Consensus 17 l~~L~~L~Ls~n--~l~~-lP~~i~~l~~L~~L~Ls~n~l~~lP--~~i~~l~~L~~L~L~~c~~ 76 (339)
|++|+.|.++.| ++.. ++.....+++|++|+|++|+++.+- .....+.+|..|++.+|..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 445555555555 3332 3333333455555555555544210 0133344445555555443
No 56
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.013 Score=55.59 Aligned_cols=58 Identities=28% Similarity=0.520 Sum_probs=27.7
Q ss_pred CCCccEEEeecCCCCccC--ccccCCCCCcEEEeecCCCccC--chh-----hhcCccCcEEEcccC
Q 037889 17 LSSLDRLDLRGCGLTAIP--QEIGCLSSLKELDICENNFESL--PAS-----IMQLSRLTYLYLSKC 74 (339)
Q Consensus 17 l~~L~~L~Ls~n~l~~lP--~~i~~l~~L~~L~Ls~n~l~~l--P~~-----i~~l~~L~~L~L~~c 74 (339)
+..|+.|||++|++...+ ...+.++.|..|+++.|++.++ |+. ...+++|++|+++.|
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence 344555555555555444 3344555555555555555432 322 123445555555553
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.60 E-value=0.022 Score=58.52 Aligned_cols=81 Identities=27% Similarity=0.293 Sum_probs=58.3
Q ss_pred CCCCccEEEeecCCCCc--cCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC-----CCCCCC
Q 037889 16 GLSSLDRLDLRGCGLTA--IPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE-----LSLSLK 88 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~--lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~-----~~~~L~ 88 (339)
-|++|+.|.+++-.+.. +-.-..++++|..||+|+++++.+ .+|++|++|+.|.+.+ -....-+. .+.+|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCCC
Confidence 46788888887766543 334456789999999999999988 6899999999998875 33333232 237888
Q ss_pred EEecccCcCC
Q 037889 89 WLDASNCKRL 98 (339)
Q Consensus 89 ~L~~~~~~~l 98 (339)
.||++.-...
T Consensus 224 vLDIS~~~~~ 233 (699)
T KOG3665|consen 224 VLDISRDKNN 233 (699)
T ss_pred eeeccccccc
Confidence 8888765433
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.38 E-value=0.15 Score=40.22 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=45.7
Q ss_pred ccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccCCCC-
Q 037889 7 TIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLPEL- 83 (339)
Q Consensus 7 ~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~lP~~- 83 (339)
++++.+ |.+.++|+.+.+.. .++.++. .+.+.++|+.+.+..+ +..++. .+..+.+|+.+.+.+ ....++..
T Consensus 2 ~i~~~~-F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~ 76 (129)
T PF13306_consen 2 SIGNNA-FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNA 76 (129)
T ss_dssp EE-TTT-TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTT
T ss_pred EECHHH-HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccc
Confidence 567776 88888899998874 5777754 4777878999998775 777773 566777889988864 34444432
Q ss_pred ---CCCCCEEec
Q 037889 84 ---SLSLKWLDA 92 (339)
Q Consensus 84 ---~~~L~~L~~ 92 (339)
..+|+.+.+
T Consensus 77 F~~~~~l~~i~~ 88 (129)
T PF13306_consen 77 FSNCTNLKNIDI 88 (129)
T ss_dssp TTT-TTECEEEE
T ss_pred cccccccccccc
Confidence 134555554
No 59
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.37 E-value=0.034 Score=31.02 Aligned_cols=20 Identities=45% Similarity=0.821 Sum_probs=12.3
Q ss_pred CCCCcEEEeecCCCccCchh
Q 037889 40 LSSLKELDICENNFESLPAS 59 (339)
Q Consensus 40 l~~L~~L~Ls~n~l~~lP~~ 59 (339)
|++|+.|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666654
No 60
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.37 E-value=0.034 Score=31.02 Aligned_cols=20 Identities=45% Similarity=0.821 Sum_probs=12.3
Q ss_pred CCCCcEEEeecCCCccCchh
Q 037889 40 LSSLKELDICENNFESLPAS 59 (339)
Q Consensus 40 l~~L~~L~Ls~n~l~~lP~~ 59 (339)
|++|+.|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666654
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=0.0054 Score=55.12 Aligned_cols=54 Identities=31% Similarity=0.527 Sum_probs=24.8
Q ss_pred CCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEccc
Q 037889 18 SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSK 73 (339)
Q Consensus 18 ~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~ 73 (339)
.+.+.|++-||.|..| ..+..|+.|+.|.||-|+|+++- .+..+++|+.|+|..
T Consensus 19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK 72 (388)
T ss_pred HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh
Confidence 3444455555554443 11334445555555555554443 244444444444444
No 62
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.02 Score=54.44 Aligned_cols=81 Identities=23% Similarity=0.256 Sum_probs=42.1
Q ss_pred CCCCccEEEeecCCCCccCc--cccCCCCCcEEEeecCCCccC---chhhhcCccCcEEEcccCCCCccCCC----CCCC
Q 037889 16 GLSSLDRLDLRGCGLTAIPQ--EIGCLSSLKELDICENNFESL---PASIMQLSRLTYLYLSKCNMLLSLPE----LSLS 86 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~lP~--~i~~l~~L~~L~Ls~n~l~~l---P~~i~~l~~L~~L~L~~c~~l~~lP~----~~~~ 86 (339)
++++|+...|.++.+...+. ....+++++.||||+|-|... -.-...|++|+.|+|+.|+..-..-. .+..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 44566666666666555442 455566666666666655532 12234566666666665443322211 2344
Q ss_pred CCEEecccCc
Q 037889 87 LKWLDASNCK 96 (339)
Q Consensus 87 L~~L~~~~~~ 96 (339)
|+.|.++.|.
T Consensus 199 lK~L~l~~CG 208 (505)
T KOG3207|consen 199 LKQLVLNSCG 208 (505)
T ss_pred hheEEeccCC
Confidence 5555555553
No 63
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.27 E-value=0.059 Score=30.03 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.5
Q ss_pred CCCccEEEeecCCCCccCccc
Q 037889 17 LSSLDRLDLRGCGLTAIPQEI 37 (339)
Q Consensus 17 l~~L~~L~Ls~n~l~~lP~~i 37 (339)
|++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 568999999999999998764
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.27 E-value=0.059 Score=30.03 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.5
Q ss_pred CCCccEEEeecCCCCccCccc
Q 037889 17 LSSLDRLDLRGCGLTAIPQEI 37 (339)
Q Consensus 17 l~~L~~L~Ls~n~l~~lP~~i 37 (339)
|++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 568999999999999998764
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.015 Score=52.77 Aligned_cols=57 Identities=26% Similarity=0.270 Sum_probs=32.5
Q ss_pred hhcCccCcEEEcccCCCCccC--CC--CCCCCCEEecccCcCCCcCCCCCCCccccccccccc
Q 037889 60 IMQLSRLTYLYLSKCNMLLSL--PE--LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEK 118 (339)
Q Consensus 60 i~~l~~L~~L~L~~c~~l~~l--P~--~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~ 118 (339)
...+++|..|||++|..+..- -+ -+..|++|.++.|-.+ .|...-.+...+.+.+.+
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLD 369 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEE
Confidence 346788888888888776640 00 1356788888887643 222223334444444433
No 66
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.00 E-value=0.0033 Score=55.03 Aligned_cols=76 Identities=20% Similarity=0.195 Sum_probs=57.7
Q ss_pred CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCCCCCCCEE
Q 037889 14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWL 90 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~~~L~~L 90 (339)
+...+..+.||++.|++..+-..++.++.|..|+++.|.+..+|..++.+..+..+++.. +.+..+|.+...+..+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCc
Confidence 455677788888888887777777888888888888888888888888888888887765 5566677766544443
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.24 E-value=0.18 Score=45.99 Aligned_cols=54 Identities=30% Similarity=0.465 Sum_probs=33.8
Q ss_pred CCCccEEEeecCCCCc---cCccccCCCCCcEEEeecCCCc----cCchhhhcCccCcEEEccc
Q 037889 17 LSSLDRLDLRGCGLTA---IPQEIGCLSSLKELDICENNFE----SLPASIMQLSRLTYLYLSK 73 (339)
Q Consensus 17 l~~L~~L~Ls~n~l~~---lP~~i~~l~~L~~L~Ls~n~l~----~lP~~i~~l~~L~~L~L~~ 73 (339)
.+.++.|||.+|.|+. +-..+.+|+.|+.|+|+.|.+. ++| -.+.+|+.|-|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNG 130 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcC
Confidence 3456777777777765 3344567777777777777654 333 2345666666654
No 68
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=89.80 E-value=0.19 Score=46.68 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=47.2
Q ss_pred CCCCccEEEeecCCCCccC-----ccccCCCCCcEEEeecCCCc-----cCchhhhcCccCcEEEcccCCCCc-------
Q 037889 16 GLSSLDRLDLRGCGLTAIP-----QEIGCLSSLKELDICENNFE-----SLPASIMQLSRLTYLYLSKCNMLL------- 78 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~lP-----~~i~~l~~L~~L~Ls~n~l~-----~lP~~i~~l~~L~~L~L~~c~~l~------- 78 (339)
+-..|+++....|++..-+ ..+...+.|+.+.++.|.|. -+-..+..+++|+.|||.+|....
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 3456777777777765432 33555567777777777654 123456667777777777765432
Q ss_pred -cCCCCCCCCCEEecccCc
Q 037889 79 -SLPELSLSLKWLDASNCK 96 (339)
Q Consensus 79 -~lP~~~~~L~~L~~~~~~ 96 (339)
.+|.+ +.|+.|++++|.
T Consensus 235 kaL~s~-~~L~El~l~dcl 252 (382)
T KOG1909|consen 235 KALSSW-PHLRELNLGDCL 252 (382)
T ss_pred HHhccc-chheeecccccc
Confidence 23332 256666666663
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.05 E-value=0.013 Score=51.48 Aligned_cols=62 Identities=21% Similarity=0.124 Sum_probs=36.7
Q ss_pred CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCC
Q 037889 14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCN 75 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~ 75 (339)
|+.++.|..|+++.|++..+|..++.+..++.+++..|..+..|.+++.+++++++++.++.
T Consensus 61 ~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 33444555566666666666666666666666666666666666666666666666655543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.95 E-value=0.022 Score=51.27 Aligned_cols=68 Identities=22% Similarity=0.247 Sum_probs=56.6
Q ss_pred CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCc--hhhhcCccCcEEEcccCCCCccCCC
Q 037889 14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP--ASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP--~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
...|+.|++|.|+-|.|+.+- .+..+++|+.|+|..|.|..+- .-+.++++|+.|+|..|.--+.=+.
T Consensus 37 c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccch
Confidence 357899999999999999873 3778899999999999998775 3567899999999998876665543
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.68 E-value=0.92 Score=35.53 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=46.7
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccCC
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
.++.+++.+ |.+.++|+.+.+.++ +..++. .+.+..+|+.+.+.. .+..++. .+..+++|+.+++..+ +..++
T Consensus 22 ~~~~I~~~~-F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~ 96 (129)
T PF13306_consen 22 TIKKIGENA-FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIG 96 (129)
T ss_dssp T--EE-TTT-TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEH
T ss_pred CeeEeChhh-ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEc
Confidence 456677776 888889999999875 888765 477777999999975 6777764 4667999999999752 44444
Q ss_pred C
Q 037889 82 E 82 (339)
Q Consensus 82 ~ 82 (339)
.
T Consensus 97 ~ 97 (129)
T PF13306_consen 97 S 97 (129)
T ss_dssp T
T ss_pred h
Confidence 3
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=87.09 E-value=0.19 Score=46.67 Aligned_cols=83 Identities=22% Similarity=0.329 Sum_probs=60.8
Q ss_pred CCCCCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCcc-----CchhhhcCccCcEEEcccCCCCcc----
Q 037889 14 SSGLSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFES-----LPASIMQLSRLTYLYLSKCNMLLS---- 79 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~L~~c~~l~~---- 79 (339)
|...+.|+.+.++.|.|.. +-..+..+++|+.|||..|.|+. +-..+..+++|+.|++++|.....
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 4455788999999998764 34567888999999999999873 345567788999999999875432
Q ss_pred ----CCCCCCCCCEEecccCc
Q 037889 80 ----LPELSLSLKWLDASNCK 96 (339)
Q Consensus 80 ----lP~~~~~L~~L~~~~~~ 96 (339)
+-...++|+.|.+.+|.
T Consensus 261 ~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHhccCCCCceeccCcch
Confidence 22344677888777764
No 73
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.02 E-value=0.43 Score=26.75 Aligned_cols=17 Identities=53% Similarity=0.853 Sum_probs=11.0
Q ss_pred CCcEEEeecCCCccCch
Q 037889 42 SLKELDICENNFESLPA 58 (339)
Q Consensus 42 ~L~~L~Ls~n~l~~lP~ 58 (339)
+|+.|+.++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666666666666664
No 74
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.78 E-value=0.46 Score=26.61 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=16.3
Q ss_pred CCccEEEeecCCCCccCc
Q 037889 18 SSLDRLDLRGCGLTAIPQ 35 (339)
Q Consensus 18 ~~L~~L~Ls~n~l~~lP~ 35 (339)
.+|++|+.++|+|+++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468999999999999997
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.98 E-value=0.051 Score=49.51 Aligned_cols=79 Identities=25% Similarity=0.254 Sum_probs=47.0
Q ss_pred CccEEEeecCCCCc--cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCC-----CCCCCCEE
Q 037889 19 SLDRLDLRGCGLTA--IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPE-----LSLSLKWL 90 (339)
Q Consensus 19 ~L~~L~Ls~n~l~~--lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~-----~~~~L~~L 90 (339)
.|++|||++..|+. +-..+..+..|+.|.|.|+.+. .+-..|.+=.+|+.|+|+.|+-....-. ...+|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47778887777654 4444556666777777777666 3445566666677777776655443321 22455555
Q ss_pred ecccCcC
Q 037889 91 DASNCKR 97 (339)
Q Consensus 91 ~~~~~~~ 97 (339)
+++.|..
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 6665543
No 76
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.04 E-value=0.4 Score=43.85 Aligned_cols=76 Identities=30% Similarity=0.310 Sum_probs=51.0
Q ss_pred CccEEEeecCCCCccCc--ccc-CCCCCcEEEeecCCCcc---CchhhhcCccCcEEEcccCCCCc---cCCCCCCCCCE
Q 037889 19 SLDRLDLRGCGLTAIPQ--EIG-CLSSLKELDICENNFES---LPASIMQLSRLTYLYLSKCNMLL---SLPELSLSLKW 89 (339)
Q Consensus 19 ~L~~L~Ls~n~l~~lP~--~i~-~l~~L~~L~Ls~n~l~~---lP~~i~~l~~L~~L~L~~c~~l~---~lP~~~~~L~~ 89 (339)
.+..|-+.++.|...-+ .|+ ..+.++.|||.+|.|+. +-.-..+|+.|++|+|+.|.... .+|.-..+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 34456666776655332 232 45789999999999884 44456789999999999876544 44422257777
Q ss_pred Eeccc
Q 037889 90 LDASN 94 (339)
Q Consensus 90 L~~~~ 94 (339)
|-+.+
T Consensus 126 lVLNg 130 (418)
T KOG2982|consen 126 LVLNG 130 (418)
T ss_pred EEEcC
Confidence 76665
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.97 E-value=0.99 Score=25.31 Aligned_cols=17 Identities=35% Similarity=0.749 Sum_probs=10.6
Q ss_pred CCCCcEEEeecCCCccC
Q 037889 40 LSSLKELDICENNFESL 56 (339)
Q Consensus 40 l~~L~~L~Ls~n~l~~l 56 (339)
+++|+.|+|+.|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35667777777766543
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=78.00 E-value=0.9 Score=41.11 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=55.3
Q ss_pred CCCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCc----cCch-------hhhcCccCcEEEcccCCCCcc
Q 037889 16 GLSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFE----SLPA-------SIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~----~lP~-------~i~~l~~L~~L~L~~c~~l~~ 79 (339)
-+..+..++||+|.|.+ +...|.+-.+|+..+++.-... .+|+ .+-++++|+..+||+|-.--.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 36788999999998864 4455666777888777754321 3333 345678888888888777666
Q ss_pred CCCCC-------CCCCEEecccCc
Q 037889 80 LPELS-------LSLKWLDASNCK 96 (339)
Q Consensus 80 lP~~~-------~~L~~L~~~~~~ 96 (339)
.|+.+ ..|.+|.++||.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 66432 467788887764
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=69.58 E-value=2 Score=23.15 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=7.0
Q ss_pred CCCcEEEeecCCCc
Q 037889 41 SSLKELDICENNFE 54 (339)
Q Consensus 41 ~~L~~L~Ls~n~l~ 54 (339)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666554
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.62 E-value=1.8 Score=37.47 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=49.7
Q ss_pred CccEEEeecCCCCcc-CccccCCCCCcEEEeecCC-CccCc-hhhh-cCccCcEEEcccCCCCccCCC----CCCCCCEE
Q 037889 19 SLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENN-FESLP-ASIM-QLSRLTYLYLSKCNMLLSLPE----LSLSLKWL 90 (339)
Q Consensus 19 ~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~-l~~lP-~~i~-~l~~L~~L~L~~c~~l~~lP~----~~~~L~~L 90 (339)
.++.++-+++.|... -+.+.++++++.|.+.+|. +..-- +.++ -.++|+.|+|++|.....--- -+.+|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 467788888887653 2457788888888888885 22110 1222 357899999999987664321 13566666
Q ss_pred ecccCc
Q 037889 91 DASNCK 96 (339)
Q Consensus 91 ~~~~~~ 96 (339)
.+.+.+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 666544
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.24 E-value=4.9 Score=22.68 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=9.6
Q ss_pred CCCcEEEeecCCCc
Q 037889 41 SSLKELDICENNFE 54 (339)
Q Consensus 41 ~~L~~L~Ls~n~l~ 54 (339)
++|+.|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777765
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.22 E-value=2.6 Score=36.43 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=50.0
Q ss_pred ccCccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCc-----cCCCCCCCCCEEecccCcCCCcC
Q 037889 32 AIPQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLL-----SLPELSLSLKWLDASNCKRLQSL 101 (339)
Q Consensus 32 ~lP~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~-----~lP~~~~~L~~L~~~~~~~l~~l 101 (339)
.+|.....=..++.+|.+++.|...- +.+.+++.++.|.+.+|+... .+-...++|+.|++++|...+.-
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 34444333345788888888876543 467788899999999988654 34446689999999999876543
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.12 E-value=5.2 Score=39.67 Aligned_cols=76 Identities=24% Similarity=0.232 Sum_probs=49.5
Q ss_pred CCCCccEEEeecCCCCcc---CccccCCCCCcEEEeecC--CCccCchhhhcC--ccCcEEEcccCCCCccCC-------
Q 037889 16 GLSSLDRLDLRGCGLTAI---PQEIGCLSSLKELDICEN--NFESLPASIMQL--SRLTYLYLSKCNMLLSLP------- 81 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~l---P~~i~~l~~L~~L~Ls~n--~l~~lP~~i~~l--~~L~~L~L~~c~~l~~lP------- 81 (339)
+.+.+..++|++|++..+ ..--...++|+.|+|++| .+...+ ++.++ ..|+.|.+.+|..-+..-
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 456677888999987654 333445688999999999 444433 33332 357889999987766543
Q ss_pred ---CCCCCCCEEec
Q 037889 82 ---ELSLSLKWLDA 92 (339)
Q Consensus 82 ---~~~~~L~~L~~ 92 (339)
+.+++|..|+-
T Consensus 295 ~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 295 AIRELFPKLLRLDG 308 (585)
T ss_pred HHHHhcchheeecC
Confidence 24566666643
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.55 E-value=12 Score=20.53 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=6.8
Q ss_pred ccCcEEEcccCCC
Q 037889 64 SRLTYLYLSKCNM 76 (339)
Q Consensus 64 ~~L~~L~L~~c~~ 76 (339)
++|+.|+|++|..
T Consensus 2 ~~L~~L~l~~C~~ 14 (26)
T smart00367 2 PNLRELDLSGCTN 14 (26)
T ss_pred CCCCEeCCCCCCC
Confidence 3455555555543
No 85
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=49.40 E-value=29 Score=31.76 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=24.2
Q ss_pred CCCCCccEEEeecCCCCc-cCc----cccCCCCCcEEEeecCCCcc
Q 037889 15 SGLSSLDRLDLRGCGLTA-IPQ----EIGCLSSLKELDICENNFES 55 (339)
Q Consensus 15 ~~l~~L~~L~Ls~n~l~~-lP~----~i~~l~~L~~L~Ls~n~l~~ 55 (339)
-.++.|+..+||.|.+.. .|+ -|++-+.|.+|.|++|++..
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 345666666676666654 333 24555666667776666553
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=46.03 E-value=10 Score=36.72 Aligned_cols=85 Identities=29% Similarity=0.422 Sum_probs=51.9
Q ss_pred CCCCCCccEEEeecC-C-CCcc----CccccCCCCCcEEEeecCC-CccCc-hhhh-cCccCcEEEcccCCCCcc-----
Q 037889 14 SSGLSSLDRLDLRGC-G-LTAI----PQEIGCLSSLKELDICENN-FESLP-ASIM-QLSRLTYLYLSKCNMLLS----- 79 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n-~-l~~l----P~~i~~l~~L~~L~Ls~n~-l~~lP-~~i~-~l~~L~~L~L~~c~~l~~----- 79 (339)
....+.|+.|+++++ . +... +.....+.+|+.|+++++. ++..- ..+. .+++|+.|.+..|..+..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345678888988873 2 1112 2234456788888888887 55322 2232 367888888877765221
Q ss_pred CCCCCCCCCEEecccCcCC
Q 037889 80 LPELSLSLKWLDASNCKRL 98 (339)
Q Consensus 80 lP~~~~~L~~L~~~~~~~l 98 (339)
+-+..++|+.|++..|..+
T Consensus 290 i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHhcCcccEEeeecCccc
Confidence 1122356888888887765
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.67 E-value=19 Score=42.54 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=13.4
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCG 29 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~ 29 (339)
|+|+.||... |..|.+|+.|+|++|.
T Consensus 5 N~LstLp~g~-F~~L~sL~~LdLsgNP 30 (2740)
T TIGR00864 5 NKISTIEEGI-CANLCNLSEIDLSGNP 30 (2740)
T ss_pred CcCCccChHH-hccCCCceEEEeeCCc
Confidence 4455555554 5555555555555543
No 88
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=39.37 E-value=16 Score=35.34 Aligned_cols=81 Identities=27% Similarity=0.365 Sum_probs=42.9
Q ss_pred CCCccEEEeecC-CCCc--cCccccCCCCCcEEEeecC-C-CccCc----hhhhcCccCcEEEcccCCCCccCC-----C
Q 037889 17 LSSLDRLDLRGC-GLTA--IPQEIGCLSSLKELDICEN-N-FESLP----ASIMQLSRLTYLYLSKCNMLLSLP-----E 82 (339)
Q Consensus 17 l~~L~~L~Ls~n-~l~~--lP~~i~~l~~L~~L~Ls~n-~-l~~lP----~~i~~l~~L~~L~L~~c~~l~~lP-----~ 82 (339)
.+.|+.|.+.++ .+.. +-......+.|+.|+++++ . ....+ .....+.+|+.|+++.|......- .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 456666666666 3443 3334556677777777763 2 11111 223345677777777766422111 0
Q ss_pred CCCCCCEEecccCcC
Q 037889 83 LSLSLKWLDASNCKR 97 (339)
Q Consensus 83 ~~~~L~~L~~~~~~~ 97 (339)
.-++|+.|.+.+|..
T Consensus 267 ~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSN 281 (482)
T ss_pred hCCCcceEccCCCCc
Confidence 123566666665654
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=30.60 E-value=19 Score=34.66 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=28.9
Q ss_pred CCCccEEEeecCCC-Cc--cCccccCCCCCcEEEeecCC-CccCc-hhhh-cCccCcEEEcccCC
Q 037889 17 LSSLDRLDLRGCGL-TA--IPQEIGCLSSLKELDICENN-FESLP-ASIM-QLSRLTYLYLSKCN 75 (339)
Q Consensus 17 l~~L~~L~Ls~n~l-~~--lP~~i~~l~~L~~L~Ls~n~-l~~lP-~~i~-~l~~L~~L~L~~c~ 75 (339)
...|++|+.+++.- .. +-.-..+..+|+.|.+++++ |+..- ..++ +...|+.|++..|-
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 45566666666543 21 11112345667777776665 33221 1122 34556666666543
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.68 E-value=37 Score=40.42 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=27.4
Q ss_pred EeecCCCCccCcc-ccCCCCCcEEEeecCCCc
Q 037889 24 DLRGCGLTAIPQE-IGCLSSLKELDICENNFE 54 (339)
Q Consensus 24 ~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~ 54 (339)
||++|+|+.||.. |..|.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 6899999998765 788999999999999876
Done!