Query 037889
Match_columns 339
No_of_seqs 309 out of 2666
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 08:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.4 8.8E-13 3E-17 122.0 9.9 115 3-123 91-217 (328)
2 4fcg_A Uncharacterized protein 99.4 1.7E-12 5.8E-17 120.1 11.7 83 17-99 182-267 (328)
3 2v9t_B SLIT homolog 2 protein 99.2 3.3E-11 1.1E-15 105.0 10.7 89 3-96 21-115 (220)
4 2v70_A SLIT-2, SLIT homolog 2 99.2 5.2E-11 1.8E-15 103.7 10.1 90 3-96 21-116 (220)
5 2wfh_A SLIT homolog 2 protein 99.2 7.3E-11 2.5E-15 100.7 10.3 114 3-123 20-137 (193)
6 3e6j_A Variable lymphocyte rec 99.2 1.6E-10 5.4E-15 101.2 12.1 113 3-123 29-146 (229)
7 1w8a_A SLIT protein; signaling 99.2 8.9E-11 3E-15 100.0 9.3 114 3-123 18-137 (192)
8 2o6s_A Variable lymphocyte rec 99.1 2.9E-10 9.9E-15 97.7 11.7 90 3-96 17-111 (208)
9 2v9t_B SLIT homolog 2 protein 99.1 1.4E-10 4.9E-15 100.9 9.8 118 2-123 41-163 (220)
10 4b8c_D Glucose-repressible alc 99.1 7.7E-11 2.6E-15 120.3 9.2 116 2-124 210-328 (727)
11 3m19_A Variable lymphocyte rec 99.1 1.8E-10 6.2E-15 102.0 10.4 82 14-95 55-141 (251)
12 2r9u_A Variable lymphocyte rec 99.1 2.4E-10 8.3E-15 95.8 10.2 89 3-96 22-116 (174)
13 3e6j_A Variable lymphocyte rec 99.1 2.6E-10 8.9E-15 99.8 10.1 117 2-123 49-170 (229)
14 1w8a_A SLIT protein; signaling 99.1 1.7E-10 5.8E-15 98.2 8.6 95 2-96 38-137 (192)
15 3g39_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 94.5 10.2 90 3-96 19-113 (170)
16 1dce_A Protein (RAB geranylger 99.1 1.3E-10 4.3E-15 115.4 8.7 59 15-74 460-518 (567)
17 2xwt_C Thyrotropin receptor; s 99.1 2.1E-10 7.1E-15 100.8 9.2 90 5-96 68-167 (239)
18 2v70_A SLIT-2, SLIT homolog 2 99.1 2.2E-10 7.4E-15 99.7 9.0 118 2-123 41-164 (220)
19 2wfh_A SLIT homolog 2 protein 99.1 3.8E-10 1.3E-14 96.2 9.6 92 2-96 40-137 (193)
20 3m19_A Variable lymphocyte rec 99.1 5.6E-10 1.9E-14 98.9 10.9 117 3-123 69-190 (251)
21 2o6q_A Variable lymphocyte rec 99.1 5.7E-10 2E-14 99.9 11.1 90 3-96 26-120 (270)
22 1ogq_A PGIP-2, polygalacturona 99.1 3.5E-11 1.2E-15 110.4 2.9 89 7-97 67-161 (313)
23 3rfs_A Internalin B, repeat mo 99.1 9.7E-10 3.3E-14 98.5 12.3 91 3-96 73-168 (272)
24 4g8a_A TOLL-like receptor 4; l 99.1 3.2E-10 1.1E-14 112.8 9.9 91 3-95 62-158 (635)
25 2o6q_A Variable lymphocyte rec 99.1 6.7E-10 2.3E-14 99.4 10.9 93 3-96 47-144 (270)
26 4ezg_A Putative uncharacterize 99.1 4.3E-10 1.5E-14 95.9 9.1 112 3-122 54-169 (197)
27 1ozn_A Reticulon 4 receptor; N 99.1 5.1E-10 1.7E-14 100.9 10.0 91 3-97 21-117 (285)
28 2o6r_A Variable lymphocyte rec 99.1 8.8E-10 3E-14 92.2 10.8 114 3-123 17-135 (177)
29 4g8a_A TOLL-like receptor 4; l 99.1 6.8E-10 2.3E-14 110.4 11.8 111 4-122 42-158 (635)
30 1p9a_G Platelet glycoprotein I 99.1 3E-10 1E-14 103.1 8.3 87 3-95 20-110 (290)
31 3zyi_A Leucine-rich repeat-con 99.1 8E-10 2.7E-14 106.3 11.7 98 3-102 85-188 (452)
32 1p9a_G Platelet glycoprotein I 99.0 1.2E-09 4.2E-14 99.0 12.2 91 3-96 65-159 (290)
33 2o6s_A Variable lymphocyte rec 99.0 1.3E-09 4.3E-14 93.6 11.6 118 2-123 37-159 (208)
34 2je0_A Acidic leucine-rich nuc 99.0 2.5E-10 8.5E-15 92.7 6.7 60 14-74 38-98 (149)
35 4eco_A Uncharacterized protein 99.0 1.4E-10 4.7E-15 116.7 6.3 93 2-96 192-316 (636)
36 2xot_A Amphoterin-induced prot 99.0 7.6E-10 2.6E-14 103.5 10.7 68 4-75 29-99 (361)
37 2ell_A Acidic leucine-rich nuc 99.0 6.4E-10 2.2E-14 92.2 9.1 78 17-95 23-105 (168)
38 2z80_A TOLL-like receptor 2, v 99.0 5.5E-10 1.9E-14 103.8 8.7 96 3-100 62-164 (353)
39 4b8c_D Glucose-repressible alc 99.0 1.9E-10 6.7E-15 117.3 6.0 94 2-98 233-329 (727)
40 1ogq_A PGIP-2, polygalacturona 99.0 3.5E-10 1.2E-14 103.7 7.0 79 18-96 50-136 (313)
41 2id5_A Lingo-1, leucine rich r 99.0 1E-09 3.6E-14 106.0 10.7 92 3-95 42-138 (477)
42 1ozn_A Reticulon 4 receptor; N 99.0 8.5E-10 2.9E-14 99.4 9.4 93 3-96 66-164 (285)
43 3zyj_A Leucine-rich repeat-con 99.0 1.6E-09 5.3E-14 104.0 11.5 97 3-101 74-176 (440)
44 2o6r_A Variable lymphocyte rec 99.0 2.1E-09 7.1E-14 89.9 10.5 70 4-74 39-110 (177)
45 4ezg_A Putative uncharacterize 99.0 1.6E-09 5.5E-14 92.3 9.8 90 4-96 77-170 (197)
46 3rgz_A Protein brassinosteroid 99.0 7.9E-10 2.7E-14 113.5 9.4 94 8-103 624-722 (768)
47 4ecn_A Leucine-rich repeat pro 99.0 3.5E-10 1.2E-14 117.3 6.4 93 2-96 434-559 (876)
48 2xwt_C Thyrotropin receptor; s 99.0 4.8E-10 1.6E-14 98.4 6.3 97 3-101 41-146 (239)
49 3rfs_A Internalin B, repeat mo 99.0 1.7E-09 6E-14 96.9 9.8 90 3-96 51-144 (272)
50 2ell_A Acidic leucine-rich nuc 99.0 1.8E-09 6.2E-14 89.4 9.0 90 3-96 34-131 (168)
51 2ifg_A High affinity nerve gro 99.0 1.8E-09 6.3E-14 100.0 9.9 90 3-96 19-114 (347)
52 1a9n_A U2A', U2A'; complex (nu 99.0 9.1E-10 3.1E-14 92.1 6.9 105 14-123 15-124 (176)
53 4eco_A Uncharacterized protein 98.9 2.1E-09 7.2E-14 108.1 10.5 119 3-123 443-577 (636)
54 3vq2_A TLR4, TOLL-like recepto 98.9 2.1E-09 7.2E-14 106.9 10.1 93 3-96 42-139 (606)
55 3zyj_A Leucine-rich repeat-con 98.9 2.1E-09 7.3E-14 103.0 9.6 92 3-96 146-242 (440)
56 2r9u_A Variable lymphocyte rec 98.9 2.1E-09 7.2E-14 90.0 8.2 75 2-77 42-118 (174)
57 2z80_A TOLL-like receptor 2, v 98.9 1.7E-09 6E-14 100.4 8.5 116 3-122 86-208 (353)
58 3zyi_A Leucine-rich repeat-con 98.9 2.6E-09 8.9E-14 102.7 10.0 91 3-95 157-252 (452)
59 4ecn_A Leucine-rich repeat pro 98.9 1.8E-09 6E-14 112.0 9.2 91 3-97 558-656 (876)
60 1dce_A Protein (RAB geranylger 98.9 1.8E-09 6.1E-14 107.1 8.9 87 2-91 472-566 (567)
61 1xeu_A Internalin C; cellular 98.9 3.3E-09 1.1E-13 94.8 9.6 110 3-123 29-139 (263)
62 2je0_A Acidic leucine-rich nuc 98.9 1.1E-09 3.6E-14 89.0 5.6 87 3-93 52-148 (149)
63 3vq2_A TLR4, TOLL-like recepto 98.9 2.3E-09 7.9E-14 106.6 9.2 94 3-97 66-165 (606)
64 2z81_A CD282 antigen, TOLL-lik 98.9 4E-09 1.4E-13 103.5 10.6 98 3-101 36-139 (549)
65 3t6q_A CD180 antigen; protein- 98.9 3.8E-09 1.3E-13 105.0 10.6 117 3-121 264-385 (606)
66 2z62_A TOLL-like receptor 4, v 98.9 4.3E-09 1.5E-13 94.3 9.6 112 4-122 18-134 (276)
67 3g39_A Variable lymphocyte rec 98.9 3.4E-09 1.2E-13 88.3 8.2 76 2-78 39-116 (170)
68 2z66_A Variable lymphocyte rec 98.9 2E-09 6.9E-14 97.9 7.3 87 4-95 18-111 (306)
69 1xku_A Decorin; proteoglycan, 98.9 8E-09 2.7E-13 95.0 11.2 90 2-96 180-274 (330)
70 2z7x_B TOLL-like receptor 1, v 98.9 3.5E-09 1.2E-13 103.4 9.2 81 15-95 321-409 (520)
71 2z62_A TOLL-like receptor 4, v 98.9 3.5E-09 1.2E-13 94.9 8.5 119 2-123 37-160 (276)
72 3v47_A TOLL-like receptor 5B a 98.9 5.1E-09 1.7E-13 100.4 10.0 83 14-96 295-382 (455)
73 2xot_A Amphoterin-induced prot 98.9 3.5E-09 1.2E-13 99.0 8.6 120 2-123 48-174 (361)
74 1a9n_A U2A', U2A'; complex (nu 98.9 3.3E-09 1.1E-13 88.7 7.4 91 3-97 29-125 (176)
75 2ft3_A Biglycan; proteoglycan, 98.9 7.6E-09 2.6E-13 95.3 10.4 89 3-96 182-275 (332)
76 1xku_A Decorin; proteoglycan, 98.9 9.7E-09 3.3E-13 94.4 11.0 88 4-96 42-132 (330)
77 1h6u_A Internalin H; cell adhe 98.9 1.5E-08 5E-13 92.6 11.8 88 3-96 51-140 (308)
78 2id5_A Lingo-1, leucine rich r 98.9 7E-09 2.4E-13 100.2 10.1 95 3-102 21-121 (477)
79 2z7x_B TOLL-like receptor 1, v 98.9 6.1E-09 2.1E-13 101.6 9.6 90 3-97 10-102 (520)
80 1ziw_A TOLL-like receptor 3; i 98.9 5.8E-09 2E-13 105.2 9.7 92 4-96 36-132 (680)
81 3o6n_A APL1; leucine-rich repe 98.9 3E-09 1E-13 100.1 7.2 91 4-96 56-152 (390)
82 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 1.1E-08 3.8E-13 101.0 11.2 114 3-123 41-157 (562)
83 1h6u_A Internalin H; cell adhe 98.8 1.6E-08 5.5E-13 92.3 11.4 78 16-96 39-118 (308)
84 3o6n_A APL1; leucine-rich repe 98.8 1.3E-08 4.5E-13 95.7 11.1 93 3-96 79-176 (390)
85 2z81_A CD282 antigen, TOLL-lik 98.8 4.3E-09 1.5E-13 103.3 8.0 102 2-104 59-167 (549)
86 1h6t_A Internalin B; cell adhe 98.8 1.9E-08 6.3E-13 91.2 11.4 110 3-123 56-167 (291)
87 3t6q_A CD180 antigen; protein- 98.8 9E-09 3.1E-13 102.3 10.2 93 3-96 43-140 (606)
88 2ft3_A Biglycan; proteoglycan, 98.8 1.5E-08 5.2E-13 93.2 11.0 89 3-96 43-134 (332)
89 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 1.3E-08 4.3E-13 100.6 11.1 82 14-95 373-460 (562)
90 3rgz_A Protein brassinosteroid 98.8 2.2E-09 7.5E-14 110.2 5.6 83 14-96 414-501 (768)
91 2z66_A Variable lymphocyte rec 98.8 6.8E-09 2.3E-13 94.3 8.2 117 3-123 111-234 (306)
92 3oja_B Anopheles plasmodium-re 98.8 3.9E-09 1.3E-13 105.2 7.2 91 4-96 62-158 (597)
93 1jl5_A Outer protein YOPM; leu 98.8 1.8E-08 6.2E-13 97.1 11.4 91 3-102 141-231 (454)
94 1xeu_A Internalin C; cellular 98.8 1.3E-08 4.5E-13 90.8 9.6 109 3-123 51-161 (263)
95 1wwl_A Monocyte differentiatio 98.8 1.6E-09 5.6E-14 99.0 3.7 81 16-96 93-184 (312)
96 3oja_B Anopheles plasmodium-re 98.8 1.8E-08 6E-13 100.5 11.3 93 3-96 85-182 (597)
97 4fmz_A Internalin; leucine ric 98.8 3.5E-08 1.2E-12 91.1 11.6 94 3-102 54-149 (347)
98 4glp_A Monocyte differentiatio 98.8 1.3E-08 4.5E-13 92.8 8.6 93 3-96 155-262 (310)
99 4ay9_X Follicle-stimulating ho 98.8 1.9E-08 6.6E-13 93.4 9.6 99 2-102 138-240 (350)
100 3g06_A SSPH2 (leucine-rich rep 98.8 3.3E-08 1.1E-12 99.0 11.9 83 2-95 49-131 (622)
101 1h6t_A Internalin B; cell adhe 98.8 2.7E-08 9.2E-13 90.1 10.3 110 3-123 78-189 (291)
102 1m9s_A Internalin B; cell inva 98.8 2.4E-08 8.1E-13 99.8 10.7 109 3-122 53-163 (605)
103 3bz5_A Internalin-J, INLJ; leu 98.8 3.2E-08 1.1E-12 95.5 11.1 85 3-95 52-137 (457)
104 2z63_A TOLL-like receptor 4, v 98.8 1.9E-08 6.6E-13 98.9 9.8 92 3-96 38-135 (570)
105 3v47_A TOLL-like receptor 5B a 98.8 2.7E-08 9.1E-13 95.3 10.5 95 3-98 309-408 (455)
106 4fmz_A Internalin; leucine ric 98.7 5.7E-08 1.9E-12 89.6 11.6 89 3-96 76-166 (347)
107 1m9s_A Internalin B; cell inva 98.7 3.4E-08 1.2E-12 98.6 10.5 109 3-122 75-185 (605)
108 2z63_A TOLL-like receptor 4, v 98.7 1.3E-08 4.6E-13 100.1 7.3 93 3-96 62-160 (570)
109 3j0a_A TOLL-like receptor 5; m 98.7 2.8E-08 9.4E-13 103.1 10.0 88 4-96 15-108 (844)
110 3bz5_A Internalin-J, INLJ; leu 98.7 6E-08 2E-12 93.6 11.6 78 15-97 82-160 (457)
111 3oja_A Leucine-rich immune mol 98.7 9.4E-09 3.2E-13 100.0 5.9 55 19-74 35-90 (487)
112 1ziw_A TOLL-like receptor 3; i 98.7 3.5E-08 1.2E-12 99.5 9.5 111 3-121 14-130 (680)
113 4ay9_X Follicle-stimulating ho 98.7 4.7E-08 1.6E-12 90.8 9.5 99 2-102 89-218 (350)
114 3g06_A SSPH2 (leucine-rich rep 98.7 7E-08 2.4E-12 96.6 11.4 96 3-111 71-166 (622)
115 3j0a_A TOLL-like receptor 5; m 98.7 2.7E-08 9.4E-13 103.1 8.5 94 3-97 34-135 (844)
116 1ds9_A Outer arm dynein; leuci 98.7 2.1E-10 7.3E-15 97.9 -6.2 89 4-96 36-126 (198)
117 2ifg_A High affinity nerve gro 98.7 2.8E-08 9.5E-13 91.9 7.6 75 2-77 41-116 (347)
118 3oja_A Leucine-rich immune mol 98.7 1.9E-08 6.6E-13 97.8 6.4 112 3-123 109-225 (487)
119 1jl5_A Outer protein YOPM; leu 98.7 9.6E-08 3.3E-12 92.1 11.1 86 3-96 183-268 (454)
120 1wwl_A Monocyte differentiatio 98.7 1.9E-08 6.6E-13 91.8 5.8 90 7-96 110-212 (312)
121 3cvr_A Invasion plasmid antige 98.7 7.3E-08 2.5E-12 95.5 10.2 88 3-103 110-197 (571)
122 3o53_A Protein LRIM1, AGAP0063 98.6 2.7E-08 9.2E-13 91.1 6.4 112 3-123 109-225 (317)
123 3o53_A Protein LRIM1, AGAP0063 98.6 1.3E-08 4.5E-13 93.2 4.0 79 14-95 30-109 (317)
124 3cvr_A Invasion plasmid antige 98.6 1.3E-07 4.6E-12 93.6 11.2 83 3-96 69-151 (571)
125 4glp_A Monocyte differentiatio 98.6 1.5E-08 5.2E-13 92.4 4.0 104 14-123 193-305 (310)
126 1o6v_A Internalin A; bacterial 98.6 2E-07 6.7E-12 89.9 11.2 81 14-96 239-320 (466)
127 1ds9_A Outer arm dynein; leuci 98.6 2.1E-09 7.2E-14 91.6 -3.5 89 3-96 58-151 (198)
128 1o6v_A Internalin A; bacterial 98.5 3.4E-07 1.2E-11 88.2 11.4 89 3-96 209-298 (466)
129 2ast_B S-phase kinase-associat 98.4 5.5E-08 1.9E-12 89.2 1.2 112 8-123 134-258 (336)
130 2ast_B S-phase kinase-associat 98.3 1.7E-07 5.7E-12 86.0 1.1 87 8-96 110-206 (336)
131 3rw6_A Nuclear RNA export fact 98.1 2.1E-06 7.1E-11 76.7 5.2 65 16-81 168-237 (267)
132 2ca6_A RAN GTPase-activating p 98.1 6.7E-07 2.3E-11 83.9 1.4 110 14-123 183-314 (386)
133 3sb4_A Hypothetical leucine ri 98.0 2.2E-05 7.7E-10 71.8 10.2 26 6-32 113-138 (329)
134 2ca6_A RAN GTPase-activating p 98.0 1.3E-06 4.4E-11 81.9 1.8 79 18-96 159-255 (386)
135 3goz_A Leucine-rich repeat-con 97.9 3.1E-06 1.1E-10 78.7 2.2 83 14-96 18-120 (362)
136 3goz_A Leucine-rich repeat-con 97.8 5E-06 1.7E-10 77.3 2.0 93 3-96 32-149 (362)
137 3e4g_A ATP synthase subunit S, 97.7 0.0001 3.6E-09 61.3 7.5 90 7-99 52-153 (176)
138 3sb4_A Hypothetical leucine ri 97.6 0.00012 4E-09 67.0 8.0 63 17-82 225-290 (329)
139 4fdw_A Leucine rich hypothetic 97.5 0.00016 5.4E-09 68.4 7.5 65 5-72 146-211 (401)
140 1z7x_W Ribonuclease inhibitor; 97.5 1.2E-05 4.1E-10 76.8 -1.0 81 16-96 311-409 (461)
141 1z7x_W Ribonuclease inhibitor; 97.4 2.4E-05 8.1E-10 74.7 0.8 79 17-95 198-294 (461)
142 3un9_A NLR family member X1; l 97.3 5.4E-05 1.8E-09 70.8 1.4 59 17-75 125-194 (372)
143 3ogk_B Coronatine-insensitive 97.2 8.9E-05 3E-09 73.0 2.2 58 17-74 163-230 (592)
144 3rfe_A Platelet glycoprotein I 97.2 0.00055 1.9E-08 54.0 5.8 53 21-75 11-66 (130)
145 4fdw_A Leucine rich hypothetic 97.1 0.0013 4.3E-08 62.1 8.5 74 3-82 122-197 (401)
146 2p1m_B Transport inhibitor res 97.1 6.7E-05 2.3E-09 73.9 -0.8 81 16-97 395-493 (594)
147 2p1m_B Transport inhibitor res 97.0 0.00032 1.1E-08 69.0 3.5 80 16-95 103-194 (594)
148 3rw6_A Nuclear RNA export fact 97.0 0.00034 1.2E-08 62.3 3.3 66 3-71 180-258 (267)
149 3ogk_B Coronatine-insensitive 97.0 0.0005 1.7E-08 67.6 4.7 83 14-96 432-524 (592)
150 3rfe_A Platelet glycoprotein I 96.9 0.0011 3.6E-08 52.3 5.1 48 3-54 18-68 (130)
151 1io0_A Tropomodulin; LRR prote 96.9 0.0003 1E-08 58.9 1.7 79 14-92 32-128 (185)
152 1io0_A Tropomodulin; LRR prote 96.9 0.00041 1.4E-08 58.0 2.6 62 35-96 30-104 (185)
153 3e4g_A ATP synthase subunit S, 96.8 0.00079 2.7E-08 55.9 3.7 65 14-78 81-153 (176)
154 3un9_A NLR family member X1; l 96.6 0.00057 1.9E-08 63.8 1.5 81 16-96 153-250 (372)
155 2ra8_A Uncharacterized protein 96.0 0.0025 8.5E-08 59.2 2.6 81 16-96 217-318 (362)
156 4h09_A Hypothetical leucine ri 96.0 0.018 6E-07 53.3 8.4 58 14-72 259-318 (379)
157 4h09_A Hypothetical leucine ri 95.0 0.027 9.4E-07 51.9 5.8 68 4-73 273-342 (379)
158 4fs7_A Uncharacterized protein 94.5 0.047 1.6E-06 50.8 5.8 65 5-72 59-125 (394)
159 2ra8_A Uncharacterized protein 94.3 0.1 3.6E-06 48.2 7.8 36 37-74 168-203 (362)
160 4gt6_A Cell surface protein; l 93.8 0.13 4.4E-06 47.8 7.4 70 8-82 279-350 (394)
161 4gt6_A Cell surface protein; l 93.8 0.16 5.4E-06 47.1 8.0 65 6-73 254-320 (394)
162 4fs7_A Uncharacterized protein 93.4 0.088 3E-06 48.9 5.5 82 8-101 288-371 (394)
163 1pgv_A TMD-1, tropomodulin TMD 90.1 0.17 5.7E-06 42.6 2.9 81 15-95 38-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 89.5 0.13 4.5E-06 43.2 1.8 59 16-74 68-136 (197)
165 2lz0_A Uncharacterized protein 36.0 58 0.002 23.5 4.9 36 37-73 16-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.39 E-value=8.8e-13 Score=122.03 Aligned_cols=115 Identities=28% Similarity=0.440 Sum_probs=96.3
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
+.++.+|+. +.++++|++|+|++|.++.+|..++.+++|++|+|++|.++.+|..++.+++|++|+|++|+.++.+|.
T Consensus 91 n~l~~lp~~--l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 91 VPLPQFPDQ--AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp SCCSSCCSC--GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred CCchhcChh--hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccCh
Confidence 678899998 778999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C------------CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 83 L------------SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 83 ~------------~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
. +.+|+.|++++|. ++.+ |..+..++.+....++.+.
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~l---p~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTG-IRSL---PASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEEC-CCCC---CGGGGGCTTCCEEEEESSC
T ss_pred hHhhccchhhhccCCCCCEEECcCCC-cCcc---hHhhcCCCCCCEEEccCCC
Confidence 4 5689999998864 3333 3445555555555555443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.39 E-value=1.7e-12 Score=120.09 Aligned_cols=83 Identities=31% Similarity=0.483 Sum_probs=40.7
Q ss_pred CCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCCC---CCCCEEecc
Q 037889 17 LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELS---LSLKWLDAS 93 (339)
Q Consensus 17 l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~~L~~~ 93 (339)
+++|++|+|++|.|+.+|..++.+++|+.|+|++|.++.+|..++.+++|++|+|++|+..+.+|..+ .+|+.|+++
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 44444444444444444544555555555555555555555445555555555555555555554432 344445554
Q ss_pred cCcCCC
Q 037889 94 NCKRLQ 99 (339)
Q Consensus 94 ~~~~l~ 99 (339)
+|..+.
T Consensus 262 ~n~~~~ 267 (328)
T 4fcg_A 262 DCSNLL 267 (328)
T ss_dssp TCTTCC
T ss_pred CCCchh
Confidence 444433
No 3
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=3.3e-11 Score=104.98 Aligned_cols=89 Identities=25% Similarity=0.421 Sum_probs=57.2
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
+.++.+|..+ .++|+.|+|++|.|+.+|. .+..+++|+.|+|++|.++.+ |..|..+++|++|+|++|... .+
T Consensus 21 ~~l~~iP~~l----~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 95 (220)
T 2v9t_B 21 KGLTEIPTNL----PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95 (220)
T ss_dssp SCCSSCCSSC----CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CC
T ss_pred CCcCcCCCcc----CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-cc
Confidence 4566777662 2567777777777777544 567777777777777777755 566777777777777764433 44
Q ss_pred CC-C---CCCCCEEecccCc
Q 037889 81 PE-L---SLSLKWLDASNCK 96 (339)
Q Consensus 81 P~-~---~~~L~~L~~~~~~ 96 (339)
|. . +.+|+.|+++++.
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHhHccCCCCCCEEECCCCC
Confidence 43 2 2566677766654
No 4
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=5.2e-11 Score=103.68 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=55.9
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccC--ccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCcc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP--QEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP--~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~ 79 (339)
+.++.+|..+ ...+++|+|++|.|+.++ ..+..+++|+.|+|++|.++.+|. .|..+++|++|+|++|...+.
T Consensus 21 n~l~~iP~~~----~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 96 (220)
T 2v70_A 21 QKLNKIPEHI----PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96 (220)
T ss_dssp SCCSSCCSCC----CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcccCccCC----CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc
Confidence 4566777662 234567777777777753 236677777777777777776653 566777777777776555444
Q ss_pred CCCC---CCCCCEEecccCc
Q 037889 80 LPEL---SLSLKWLDASNCK 96 (339)
Q Consensus 80 lP~~---~~~L~~L~~~~~~ 96 (339)
.|.. +.+|+.|+++++.
T Consensus 97 ~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 97 QHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp CGGGGTTCSSCCEEECTTSC
T ss_pred CHhHhcCCcCCCEEECCCCc
Confidence 4432 2566666666654
No 5
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=7.3e-11 Score=100.72 Aligned_cols=114 Identities=22% Similarity=0.351 Sum_probs=87.5
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
+.|+.+|..+ .++|++|+|++|+|+.+|..+..+++|+.|+|++|.++.+| ..|..+++|++|+|++|......|
T Consensus 20 ~~l~~ip~~~----~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~ 95 (193)
T 2wfh_A 20 KGLKVLPKGI----PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95 (193)
T ss_dssp SCCSSCCSCC----CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCCCcCCCCC----CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH
Confidence 5789999883 36899999999999999999999999999999999999887 569999999999999977665555
Q ss_pred CCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 82 ELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 82 ~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
..+ .+|+.|+++++. ++.++. ..+..++.+....+..++
T Consensus 96 ~~f~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 96 RTFDGLKSLRLLSLHGND-ISVVPE--GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTTTCTTCCEEECCSSC-CCBCCT--TTTTTCTTCCEEECCSSC
T ss_pred HHhCCCCCCCEEECCCCC-CCeeCh--hhhhcCccccEEEeCCCC
Confidence 443 678899998864 333332 234444444444444444
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.18 E-value=1.6e-10 Score=101.19 Aligned_cols=113 Identities=26% Similarity=0.331 Sum_probs=85.5
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l 80 (339)
++++.+|..+ .++|++|+|++|.|+++ |..+..+++|+.|+|++|+|+.+|.. +..+++|++|+|++|+.....
T Consensus 29 ~~l~~ip~~~----~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 104 (229)
T 3e6j_A 29 KRHASVPAGI----PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104 (229)
T ss_dssp SCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCccCCCC----CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC
Confidence 5688899873 38899999999999995 77789999999999999999988854 688999999999997655444
Q ss_pred CCC---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 81 PEL---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 81 P~~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
|.. +.+|+.|+++++. ++.+ |..+..++.+....++.+.
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~-l~~l---p~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNK-LTEL---PRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCSC---CTTGGGCTTCSEEECCSSC
T ss_pred hhHhCcchhhCeEeccCCc-cccc---CcccccCCCCCEEECCCCc
Confidence 433 4688899998864 3333 4455566666666665554
No 7
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=8.9e-11 Score=99.97 Aligned_cols=114 Identities=22% Similarity=0.274 Sum_probs=88.9
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc--ccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCcc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE--IGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~--i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~ 79 (339)
++|+.+|..+ . .+|++|+|++|.|+++|.. ++.+++|+.|+|++|.|+.+ |..|..+++|++|+|++|+..+.
T Consensus 18 ~~l~~ip~~~--~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 93 (192)
T 1w8a_A 18 RGLKEIPRDI--P--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93 (192)
T ss_dssp SCCSSCCSCC--C--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE
T ss_pred CCcCcCccCC--C--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc
Confidence 5789999983 3 3899999999999998764 89999999999999999977 67899999999999999877766
Q ss_pred CCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 80 LPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 80 lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
.|..+ .+|+.|+++++..-... +..+..++.+....++.++
T Consensus 94 ~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 94 SNKMFLGLHQLKTLNLYDNQISCVM---PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSSSSTTCTTCCEEECCSSCCCEEC---TTSSTTCTTCCEEECTTCC
T ss_pred CHHHhcCCCCCCEEECCCCcCCeeC---HHHhhcCCCCCEEEeCCCC
Confidence 66543 78899999887543333 3344555555555555554
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.14 E-value=2.9e-10 Score=97.67 Aligned_cols=90 Identities=28% Similarity=0.371 Sum_probs=58.7
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l 80 (339)
+.++.+|..+ .++|++|+|++|.++++|.. +..+++|+.|+|++|+++.+|.. +..+++|++|+|++|+..+..
T Consensus 17 ~~l~~~p~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 92 (208)
T 2o6s_A 17 QGRTSVPTGI----PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92 (208)
T ss_dssp SCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCCCCCC----CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence 4566677652 45777777777777776543 56777777777777777777643 567777777777775544333
Q ss_pred CCC---CCCCCEEecccCc
Q 037889 81 PEL---SLSLKWLDASNCK 96 (339)
Q Consensus 81 P~~---~~~L~~L~~~~~~ 96 (339)
+.. +.+|+.|+++++.
T Consensus 93 ~~~~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQ 111 (208)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HhHhcCccCCCEEEcCCCc
Confidence 322 3567777776653
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.14 E-value=1.4e-10 Score=100.89 Aligned_cols=118 Identities=22% Similarity=0.273 Sum_probs=91.8
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCcc
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~ 79 (339)
-|+|+.+|+.. |..+++|++|+|++|.|+.+ |..+.++++|++|+|++|.|+.+|.. +..+++|++|+|++|+....
T Consensus 41 ~n~i~~i~~~~-~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 41 QNTIKVIPPGA-FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL 119 (220)
T ss_dssp SSCCCEECTTS-STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCCcCHhH-hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe
Confidence 36788898865 89999999999999999995 88899999999999999999999865 68899999999999877766
Q ss_pred CCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 80 LPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 80 lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
.|..+ .+|+.|+++++.. +.++ +..+..++.+....+..++
T Consensus 120 ~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 120 RVDAFQDLHNLNLLSLYDNKL-QTIA--KGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCC-SCCC--TTTTTTCTTCCEEECCSSC
T ss_pred CHHHcCCCCCCCEEECCCCcC-CEEC--HHHHhCCCCCCEEEeCCCC
Confidence 66654 6789999988653 3222 2234444444444444444
No 10
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=7.7e-11 Score=120.30 Aligned_cols=116 Identities=24% Similarity=0.225 Sum_probs=81.8
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
|+++...|.. +..+..|+.|+|++|.|..+|..+..+++|+.|+|++|.|+.+|..|+.|++|++|+|++|+.. .+|
T Consensus 210 ~n~~~~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp 286 (727)
T 4b8c_D 210 ENRMVMPKDS--KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLP 286 (727)
T ss_dssp --------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred ccceecChhh--hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence 3445544554 7888999999999999988998888999999999999999999988999999999999986654 788
Q ss_pred CCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCCC
Q 037889 82 ELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSH 124 (339)
Q Consensus 82 ~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~~ 124 (339)
..+ .+|+.|++++|. +..+ |..+..+..+....++.+..
T Consensus 287 ~~~~~l~~L~~L~L~~N~-l~~l---p~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNM-VTTL---PWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SSGGGGTTCSEEECCSSC-CCCC---CSSTTSCTTCCCEECTTSCC
T ss_pred hhhcCCCCCCEEECCCCC-CCcc---ChhhhcCCCccEEeCCCCcc
Confidence 755 678888888763 3444 44466666666666665553
No 11
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.13 E-value=1.8e-10 Score=102.03 Aligned_cols=82 Identities=26% Similarity=0.300 Sum_probs=39.4
Q ss_pred CCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCCCC---CCCCC
Q 037889 14 SSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLPEL---SLSLK 88 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP~~---~~~L~ 88 (339)
|.++++|++|+|++|.|++++ ..+..+++|+.|+|++|+++.+| ..+..+++|++|+|++|+..+..|.. +.+|+
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 134 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc
Confidence 445555555555555555532 23455555555555555555444 23445555555555554333222221 24455
Q ss_pred EEecccC
Q 037889 89 WLDASNC 95 (339)
Q Consensus 89 ~L~~~~~ 95 (339)
.|+++++
T Consensus 135 ~L~Ls~N 141 (251)
T 3m19_A 135 ELRLNTN 141 (251)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 5555544
No 12
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=2.4e-10 Score=95.82 Aligned_cols=89 Identities=27% Similarity=0.352 Sum_probs=69.7
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l 80 (339)
++|+.+|..+ .++|++|+|++|.|+++ |..+.++++|+.|+|++|+|+.+|.. +..+++|++|+|++|+.. .+
T Consensus 22 n~l~~iP~~~----~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l 96 (174)
T 2r9u_A 22 IRLASVPAGI----PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SI 96 (174)
T ss_dssp SCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCCCccCCCc----CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-ee
Confidence 5688888873 37889999999999986 66788999999999999999988865 578999999999986544 45
Q ss_pred CCC----CCCCCEEecccCc
Q 037889 81 PEL----SLSLKWLDASNCK 96 (339)
Q Consensus 81 P~~----~~~L~~L~~~~~~ 96 (339)
|.. +.+|+.|++.++.
T Consensus 97 ~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 97 PRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CTTTTTTCTTCSEEECCSSC
T ss_pred CHHHhccccCCCEEEeCCCC
Confidence 542 3567777777654
No 13
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.11 E-value=2.6e-10 Score=99.82 Aligned_cols=117 Identities=22% Similarity=0.337 Sum_probs=89.4
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCcc
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~ 79 (339)
-|+|+.+++.. |.++++|++|+|++|.|+.+|.. +..+++|+.|+|++|+|+.+|.. +..+++|++|+|++|+ +..
T Consensus 49 ~n~i~~~~~~~-~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~ 126 (229)
T 3e6j_A 49 DNQITKLEPGV-FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTE 126 (229)
T ss_dssp SSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCS
T ss_pred CCccCccCHHH-hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccc
Confidence 36677885554 89999999999999999998755 68999999999999999999855 6899999999999865 558
Q ss_pred CCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 80 LPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 80 lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
+|..+ .+|+.|+++++. ++.++. ..+..++.+....+..++
T Consensus 127 lp~~~~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 127 LPRGIERLTHLTHLALDQNQ-LKSIPH--GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCTTGGGCTTCSEEECCSSC-CCCCCT--TTTTTCTTCCEEECTTSC
T ss_pred cCcccccCCCCCEEECCCCc-CCccCH--HHHhCCCCCCEEEeeCCC
Confidence 88644 688999998864 333332 334445555554554444
No 14
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=1.7e-10 Score=98.19 Aligned_cols=95 Identities=25% Similarity=0.293 Sum_probs=81.1
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCcc
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~ 79 (339)
-|+|+.+|+...+..+++|++|+|++|.|+++ |..+..+++|+.|+|++|+|+.+|. .+..+++|++|+|++|+..+.
T Consensus 38 ~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp SCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred CCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 36788887641278999999999999999996 7889999999999999999998864 588999999999999888887
Q ss_pred CCCCC---CCCCEEecccCc
Q 037889 80 LPELS---LSLKWLDASNCK 96 (339)
Q Consensus 80 lP~~~---~~L~~L~~~~~~ 96 (339)
.|..+ .+|+.|++.++.
T Consensus 118 ~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 118 MPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CTTSSTTCTTCCEEECTTCC
T ss_pred CHHHhhcCCCCCEEEeCCCC
Confidence 78754 578888888765
No 15
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=3.3e-10 Score=94.53 Aligned_cols=90 Identities=27% Similarity=0.303 Sum_probs=69.0
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l 80 (339)
++|+.+|..+ .++|++|+|++|.|+++ |..+..+++|+.|+|++|+|+.+|.. +..+++|++|+|++|+..+..
T Consensus 19 n~l~~ip~~~----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 94 (170)
T 3g39_A 19 KSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94 (170)
T ss_dssp SCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCccCccC----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC
Confidence 5788888873 37888999999999886 66788899999999999999988765 578899999999986554433
Q ss_pred CCCC---CCCCEEecccCc
Q 037889 81 PELS---LSLKWLDASNCK 96 (339)
Q Consensus 81 P~~~---~~L~~L~~~~~~ 96 (339)
|..+ .+|+.|++.++.
T Consensus 95 ~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 95 RGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHhcCCCCCCEEEeCCCC
Confidence 3333 567777777654
No 16
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=1.3e-10 Score=115.39 Aligned_cols=59 Identities=29% Similarity=0.431 Sum_probs=28.4
Q ss_pred CCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccC
Q 037889 15 SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74 (339)
Q Consensus 15 ~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c 74 (339)
+++++|+.|+|++|.|+.+|..++.+++|+.|+|++|.|+.+| .++.+++|+.|+|++|
T Consensus 460 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 460 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred cccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 4444444444444444444444444444444444444444444 4444444444444443
No 17
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.10 E-value=2.1e-10 Score=100.75 Aligned_cols=90 Identities=20% Similarity=0.222 Sum_probs=61.2
Q ss_pred CcccCCcCcCCCCCCccEEEeec-CCCCccC-ccccCCCCCcEEEeecCCCccCchhhhcCccCc---EEEcccCCCCcc
Q 037889 5 LVTIPASILSSGLSSLDRLDLRG-CGLTAIP-QEIGCLSSLKELDICENNFESLPASIMQLSRLT---YLYLSKCNMLLS 79 (339)
Q Consensus 5 L~~lP~~~~~~~l~~L~~L~Ls~-n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~---~L~L~~c~~l~~ 79 (339)
++.+|+.. |.++++|++|+|++ |.++.+| ..+.++++|+.|++++|.++.+|. +..+++|+ +|++++|..+..
T Consensus 68 l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 68 LQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp CCEECTTT-EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred cceeCHhH-cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhh
Confidence 67777654 67777788888877 7777765 457777777777777777777775 66666666 777777634555
Q ss_pred CCCC-C---CCCC-EEecccCc
Q 037889 80 LPEL-S---LSLK-WLDASNCK 96 (339)
Q Consensus 80 lP~~-~---~~L~-~L~~~~~~ 96 (339)
+|.. + .+|+ .|+++++.
T Consensus 146 i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 146 IPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp ECTTTTTTTBSSEEEEECCSCC
T ss_pred cCcccccchhcceeEEEcCCCC
Confidence 5542 2 4566 66666543
No 18
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.10 E-value=2.2e-10 Score=99.74 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=90.2
Q ss_pred CCCCcccC-CcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCc
Q 037889 2 CRSLVTIP-ASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLL 78 (339)
Q Consensus 2 Cn~L~~lP-~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~ 78 (339)
.|+|+.++ ..+ |..+++|++|+|++|.|+.+|. .+..+++|+.|+|++|.++.+|. .+..+++|++|+|++|+..+
T Consensus 41 ~N~l~~~~~~~~-~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 119 (220)
T 2v70_A 41 NNEFTVLEATGI-FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119 (220)
T ss_dssp SSCCCEECCCCC-GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC
T ss_pred CCcCCccCchhh-hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe
Confidence 36788884 444 7899999999999999999765 79999999999999999998875 58899999999999988777
Q ss_pred cCCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 79 SLPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 79 ~lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
..|..+ .+|+.|+++++..-... +..+..++.+....++.++
T Consensus 120 ~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 120 VGNDSFIGLSSVRLLSLYDNQITTVA---PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp BCTTSSTTCTTCSEEECTTSCCCCBC---TTTTTTCTTCCEEECCSCC
T ss_pred ECHhHcCCCccCCEEECCCCcCCEEC---HHHhcCCCCCCEEEecCcC
Confidence 667654 67889999886532222 3344445555444555444
No 19
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.08 E-value=3.8e-10 Score=96.24 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=78.2
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~ 79 (339)
.|+|+.+|.. |.++++|++|+|++|.|+.++ ..|.++++|+.|+|++|.++.+| ..|..+++|++|+|++|+.. .
T Consensus 40 ~n~i~~ip~~--~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~ 116 (193)
T 2wfh_A 40 GNQFTLVPKE--LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-V 116 (193)
T ss_dssp SSCCCSCCGG--GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-B
T ss_pred CCcCchhHHH--hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-e
Confidence 4678899977 899999999999999999975 56999999999999999999887 46999999999999996655 5
Q ss_pred CCC-C---CCCCCEEecccCc
Q 037889 80 LPE-L---SLSLKWLDASNCK 96 (339)
Q Consensus 80 lP~-~---~~~L~~L~~~~~~ 96 (339)
+|. . +.+|+.|++.++.
T Consensus 117 ~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 117 VPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred eChhhhhcCccccEEEeCCCC
Confidence 554 3 3678888888754
No 20
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.08 E-value=5.6e-10 Score=98.86 Aligned_cols=117 Identities=23% Similarity=0.289 Sum_probs=88.4
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+|+.+++.. |.++++|++|+|++|.|+++| ..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+..+..
T Consensus 69 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 69 NQLQTLSAGV-FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp SCCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCCccCHhH-hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 5677787775 899999999999999999976 4579999999999999999999865 689999999999997655444
Q ss_pred CCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 81 PELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 81 P~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
|..+ .+|+.|+++++.. +.++ +..+..++.+....+..++
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l-~~~~--~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQL-QSVP--HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCC-SCCC--TTTTTTCTTCCEEECCSCC
T ss_pred HHHcCcCcCCCEEECCCCcC-CccC--HHHHhCCCCCCEEEeeCCc
Confidence 4333 6889999988653 3222 2334445555555555444
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.08 E-value=5.7e-10 Score=99.89 Aligned_cols=90 Identities=23% Similarity=0.396 Sum_probs=57.4
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l 80 (339)
++|+.+|..+ .++|+.|+|++|.|+.+|. .+..+++|++|+|++|.++.+|.. +..+++|++|+|++|......
T Consensus 26 ~~l~~ip~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~ 101 (270)
T 2o6q_A 26 KKLTAIPSNI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101 (270)
T ss_dssp SCCSSCCSCC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC
T ss_pred CCCCccCCCC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC
Confidence 4566777662 2567777777777777654 577777777777777777777654 356777777777775443322
Q ss_pred CCC---CCCCCEEecccCc
Q 037889 81 PEL---SLSLKWLDASNCK 96 (339)
Q Consensus 81 P~~---~~~L~~L~~~~~~ 96 (339)
+.. +.+|+.|+++++.
T Consensus 102 ~~~~~~l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDRNQ 120 (270)
T ss_dssp TTTTTTCSSCCEEECCSSC
T ss_pred HhHcccccCCCEEECCCCc
Confidence 222 2566777776644
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.07 E-value=3.5e-11 Score=110.42 Aligned_cols=89 Identities=27% Similarity=0.313 Sum_probs=71.7
Q ss_pred ccCCcCcCCCCCCccEEEeec-CCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCC
Q 037889 7 TIPASILSSGLSSLDRLDLRG-CGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPEL 83 (339)
Q Consensus 7 ~lP~~~~~~~l~~L~~L~Ls~-n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~ 83 (339)
.+|+. +.++++|++|+|++ |.+.+ +|..++++++|++|+|++|.++ .+|..+..+++|++|+|++|...+.+|..
T Consensus 67 ~~~~~--l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 67 PIPSS--LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp ECCGG--GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred ccChh--HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence 57777 78888888888884 77775 7888888888888888888887 77888888888888888887777777764
Q ss_pred C---CCCCEEecccCcC
Q 037889 84 S---LSLKWLDASNCKR 97 (339)
Q Consensus 84 ~---~~L~~L~~~~~~~ 97 (339)
+ .+|+.|+++++..
T Consensus 145 ~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRI 161 (313)
T ss_dssp GGGCTTCCEEECCSSCC
T ss_pred HhcCCCCCeEECcCCcc
Confidence 3 6778888877653
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.07 E-value=9.7e-10 Score=98.55 Aligned_cols=91 Identities=32% Similarity=0.401 Sum_probs=65.1
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+++.++ . +..+++|++|+|++|.++++|.. ++.+++|++|+|++|+++.+|.. ++.+++|++|+|++|+..+..
T Consensus 73 n~l~~~~-~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 149 (272)
T 3rfs_A 73 NKLHDIS-A--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149 (272)
T ss_dssp SCCCCCG-G--GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCch-h--hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC
Confidence 4555554 3 67788888888888888886544 67888888888888888877644 678888888888886555443
Q ss_pred CCC---CCCCCEEecccCc
Q 037889 81 PEL---SLSLKWLDASNCK 96 (339)
Q Consensus 81 P~~---~~~L~~L~~~~~~ 96 (339)
|.. +.+|+.|++++|.
T Consensus 150 ~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 150 KGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHhccCccCCEEECCCCC
Confidence 432 3677888887764
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.07 E-value=3.2e-10 Score=112.80 Aligned_cols=91 Identities=26% Similarity=0.287 Sum_probs=48.8
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+|+.+|+.. |.++++|++|+|++|.|+++|+ .|.++++|++|+|++|+|+.+|. .|.++++|++|+|++|+.. .+
T Consensus 62 N~i~~l~~~~-f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l 139 (635)
T 4g8a_A 62 NPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SL 139 (635)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CS
T ss_pred CCCCCCCHHH-HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CC
Confidence 4455555443 5556666666666666665433 35556666666666666665553 3555666666666654333 23
Q ss_pred CC-C---CCCCCEEecccC
Q 037889 81 PE-L---SLSLKWLDASNC 95 (339)
Q Consensus 81 P~-~---~~~L~~L~~~~~ 95 (339)
|. . +.+|+.|+++++
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 140 ENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp TTCCCTTCTTCCEEECCSS
T ss_pred ChhhhhcCcccCeeccccC
Confidence 32 2 245555555554
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.06 E-value=6.7e-10 Score=99.44 Aligned_cols=93 Identities=24% Similarity=0.326 Sum_probs=70.7
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~l 80 (339)
++++.+|+.. |.++++|++|+|++|.|+++|.. +..+++|++|+|++|.++.+|. .+..+++|++|+|++|......
T Consensus 47 n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 125 (270)
T 2o6q_A 47 NKLSSLPSKA-FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP 125 (270)
T ss_dssp SCCSCCCTTS-SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCCeeCHHH-hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC
Confidence 5677787754 78888888888888888887765 4778888888888888888774 4578888888888886655544
Q ss_pred CCC---CCCCCEEecccCc
Q 037889 81 PEL---SLSLKWLDASNCK 96 (339)
Q Consensus 81 P~~---~~~L~~L~~~~~~ 96 (339)
|.. +.+|+.|+++++.
T Consensus 126 ~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 126 PRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHhCcCcCCCEEECCCCc
Confidence 433 3677888887764
No 26
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.06 E-value=4.3e-10 Score=95.95 Aligned_cols=112 Identities=16% Similarity=0.116 Sum_probs=77.2
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCcc-CchhhhcCccCcEEEcccCCCCccCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFES-LPASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
+.++.+| . +..+++|++|++++|.++.++ .+..+++|++|++++|.++. .|..++.+++|++|+|++|......|
T Consensus 54 n~i~~l~-~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 129 (197)
T 4ezg_A 54 INVTDLT-G--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129 (197)
T ss_dssp SCCSCCT-T--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH
T ss_pred CCccChH-H--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH
Confidence 4566677 4 677888888888888776654 67778888888888888874 56778888888888888877666555
Q ss_pred C---CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCC
Q 037889 82 E---LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKH 122 (339)
Q Consensus 82 ~---~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~ 122 (339)
. .+++|+.|++++|..+..++ .+..++.+....++.+
T Consensus 130 ~~l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 130 TKINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFD 169 (197)
T ss_dssp HHHTTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTB
T ss_pred HHHhhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCC
Confidence 4 23678888888776444443 3444454444444443
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.06 E-value=5.1e-10 Score=100.86 Aligned_cols=91 Identities=24% Similarity=0.307 Sum_probs=62.9
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
+.++.+|..+ .++|++|+|++|.++.+| ..+..+++|+.|+|++|.++.+ |..+..+++|++|+|++|..++.+
T Consensus 21 ~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 21 QGLQAVPVGI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp SCCSSCCTTC----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred CCcccCCcCC----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc
Confidence 3467777652 457778888888887765 4577778888888888877766 566777788888888876645555
Q ss_pred -CCCC---CCCCEEecccCcC
Q 037889 81 -PELS---LSLKWLDASNCKR 97 (339)
Q Consensus 81 -P~~~---~~L~~L~~~~~~~ 97 (339)
|..+ .+|+.|++.++..
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~l 117 (285)
T 1ozn_A 97 DPATFHGLGRLHTLHLDRCGL 117 (285)
T ss_dssp CTTTTTTCTTCCEEECTTSCC
T ss_pred CHHHhcCCcCCCEEECCCCcC
Confidence 4332 5677777777653
No 28
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=8.8e-10 Score=92.18 Aligned_cols=114 Identities=26% Similarity=0.406 Sum_probs=86.7
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l 80 (339)
++++.+|..+ .++|+.|++++|.++++|. .++.+++|++|+|++|.++.+|.. +..+++|++|+|++|+..+..
T Consensus 17 ~~l~~~p~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 92 (177)
T 2o6r_A 17 KGLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92 (177)
T ss_dssp SCCSSCCTTC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCccCCCCC----CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC
Confidence 5688899773 4789999999999999765 478999999999999999998855 689999999999997666544
Q ss_pred CCC---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 81 PEL---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 81 P~~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
|.. +.+|+.|+++++. ++.++. ..+..++.+....++.++
T Consensus 93 ~~~~~~l~~L~~L~l~~N~-l~~~~~--~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 93 NGVFDKLTQLKELALDTNQ-LKSVPD--GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTTTCTTCCEEECCSSC-CSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred HHHhhCCcccCEEECcCCc-ceEeCH--HHhcCCcccCEEEecCCC
Confidence 433 3689999998864 343332 223455555556666555
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.06 E-value=6.8e-10 Score=110.36 Aligned_cols=111 Identities=22% Similarity=0.198 Sum_probs=84.4
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccCC
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
+|+++|+. + -+++++|+|++|+|+++| .+|.++++|++|+|++|+|+.+|+ .|.+|++|++|+|++|+ +..+|
T Consensus 42 ~l~~vP~~--l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~ 116 (635)
T 4g8a_A 42 NFYKIPDN--L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLA 116 (635)
T ss_dssp CCSSCCSS--S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEEC
T ss_pred CcCccCCC--C--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCC
Confidence 68899998 3 358999999999999986 579999999999999999999975 68999999999999975 55565
Q ss_pred C-C---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCC
Q 037889 82 E-L---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKH 122 (339)
Q Consensus 82 ~-~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~ 122 (339)
. . +.+|+.|++++|. ++.++. ..++.++.+....++.+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~-l~~l~~--~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETN-LASLEN--FPIGHLKTLKELNVAHN 158 (635)
T ss_dssp GGGGTTCTTCCEEECTTSC-CCCSTT--CCCTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCCEEECCCCc-CCCCCh--hhhhcCcccCeeccccC
Confidence 3 3 4789999999874 333332 22444444444444433
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.05 E-value=3e-10 Score=103.08 Aligned_cols=87 Identities=26% Similarity=0.258 Sum_probs=48.6
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
++|+.+|..+ .++|+.|+|++|.|+.+ |..+..+++|+.|+|++|.++.+|.. +.+++|++|+|++| .+..+|
T Consensus 20 ~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~ 93 (290)
T 1p9a_G 20 RNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLP 93 (290)
T ss_dssp SCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCC
T ss_pred CCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCc
Confidence 4566666652 24566666666666663 44566666666666666666655533 55556666666653 333455
Q ss_pred CCC---CCCCEEecccC
Q 037889 82 ELS---LSLKWLDASNC 95 (339)
Q Consensus 82 ~~~---~~L~~L~~~~~ 95 (339)
..+ .+|+.|+++++
T Consensus 94 ~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 94 LLGQTLPALTVLDVSFN 110 (290)
T ss_dssp CCTTTCTTCCEEECCSS
T ss_pred hhhccCCCCCEEECCCC
Confidence 432 34555555554
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.05 E-value=8e-10 Score=106.33 Aligned_cols=98 Identities=27% Similarity=0.360 Sum_probs=54.2
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+|+.+++.. |.++++|++|+|++|.|+.+ |..+.++++|++|+|++|.++.+|.. +..+++|++|+|++|+.. .+
T Consensus 85 n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~ 162 (452)
T 3zyi_A 85 NNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SI 162 (452)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EE
T ss_pred CcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-ee
Confidence 3444443333 55666666666666666664 34566666666666666666665533 555666666666664433 33
Q ss_pred CC-C---CCCCCEEecccCcCCCcCC
Q 037889 81 PE-L---SLSLKWLDASNCKRLQSLP 102 (339)
Q Consensus 81 P~-~---~~~L~~L~~~~~~~l~~l~ 102 (339)
|. . +.+|+.|++.+|..++.++
T Consensus 163 ~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 163 PSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp CTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CHhHHhcCCcccEEeCCCCCCccccC
Confidence 32 2 2456666666555544443
No 32
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.05 E-value=1.2e-09 Score=99.00 Aligned_cols=91 Identities=29% Similarity=0.361 Sum_probs=69.4
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
|+|+.+|.. ..+++|++|+|++|.|+.+|..+..+++|+.|+|++|+++.+| ..|..+++|++|+|++|+.....|
T Consensus 65 n~l~~~~~~---~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 65 AELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp SCCCEEECC---SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CccCcccCC---CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence 556666653 5788888888888888888888888888888888888888887 567888888888888865554333
Q ss_pred CC---CCCCCEEecccCc
Q 037889 82 EL---SLSLKWLDASNCK 96 (339)
Q Consensus 82 ~~---~~~L~~L~~~~~~ 96 (339)
.. +.+|+.|+++++.
T Consensus 142 ~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp TTTTTCTTCCEEECTTSC
T ss_pred hhcccccCCCEEECCCCc
Confidence 33 3578888888764
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.05 E-value=1.3e-09 Score=93.64 Aligned_cols=118 Identities=25% Similarity=0.364 Sum_probs=89.9
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCcc
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~ 79 (339)
.++++.+|+.+ +.++++|++|+|++|.++.+|.. +..+++|++|+|++|+++.+|.. +..+++|++|+|++|+..+.
T Consensus 37 ~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 115 (208)
T 2o6s_A 37 TNSLKSLPNGV-FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115 (208)
T ss_dssp SSCCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCcCChhh-hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCccc
Confidence 35788888876 88999999999999999998765 68999999999999999998855 68999999999999765544
Q ss_pred CCCC---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 80 LPEL---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 80 lP~~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
.|.. +.+|+.|+++++. ++.++. ..+..++.+....++.+.
T Consensus 116 ~~~~~~~l~~L~~L~l~~N~-l~~~~~--~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 116 PDGVFDKLTQLKDLRLYQNQ-LKSVPD--GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CSCCCT--TTTTTCTTCCEEECCSCC
T ss_pred CHhHhccCCcCCEEECCCCc-cceeCH--HHhccCCCccEEEecCCC
Confidence 4433 3689999998864 333322 234455555555555554
No 34
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.05 E-value=2.5e-10 Score=92.74 Aligned_cols=60 Identities=28% Similarity=0.366 Sum_probs=28.8
Q ss_pred CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCcc-CchhhhcCccCcEEEcccC
Q 037889 14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFES-LPASIMQLSRLTYLYLSKC 74 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~L~~c 74 (339)
+..+++|++|++++|.++.+ ..++.+++|+.|+|++|.++. +|..+..+++|++|++++|
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 44444455555555544444 344444455555555555443 4444444445555555443
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.05 E-value=1.4e-10 Score=116.68 Aligned_cols=93 Identities=10% Similarity=0.150 Sum_probs=77.3
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCc------------------cCcccc--CCCCCcEEEeecCCCc-cCchhh
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTA------------------IPQEIG--CLSSLKELDICENNFE-SLPASI 60 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~------------------lP~~i~--~l~~L~~L~Ls~n~l~-~lP~~i 60 (339)
+|+++.+|+. ++++++|++|+|++|.+++ +|..++ ++++|++|+|++|.+. .+|..+
T Consensus 192 ~n~l~~ip~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITFVSKA--VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEEECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCccCCHH--HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 4677778888 8889999999999999998 899988 9999999999999866 788889
Q ss_pred hcCccCcEEEcccCC-CCc-cCCCCC---------CCCCEEecccCc
Q 037889 61 MQLSRLTYLYLSKCN-MLL-SLPELS---------LSLKWLDASNCK 96 (339)
Q Consensus 61 ~~l~~L~~L~L~~c~-~l~-~lP~~~---------~~L~~L~~~~~~ 96 (339)
+++++|++|+|++|+ ..+ .+|..+ .+|+.|++++|.
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 999999999999887 555 677533 678888888765
No 36
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.04 E-value=7.6e-10 Score=103.49 Aligned_cols=68 Identities=26% Similarity=0.371 Sum_probs=31.5
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCccCcc-cc-CCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCC
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IG-CLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCN 75 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~-~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~ 75 (339)
+|+.+|..+ ...++.|+|++|+|+++|.. +. .+++|+.|+|++|+|+.+| ..|..+++|++|+|++|+
T Consensus 29 ~l~~iP~~~----~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 29 QLPNVPQSL----PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp CCSSCCSSC----CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcCccCccC----CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 455555542 12344555555555543332 32 4455555555555555443 234445555555555433
No 37
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.04 E-value=6.4e-10 Score=92.17 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=49.5
Q ss_pred CCCccEEEeecCCCC--ccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC---CCCCCEEe
Q 037889 17 LSSLDRLDLRGCGLT--AIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL---SLSLKWLD 91 (339)
Q Consensus 17 l~~L~~L~Ls~n~l~--~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~---~~~L~~L~ 91 (339)
.++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++.+ ..+..+++|++|+|++|.....+|.. +++|+.|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 456666666666666 4666666666666666666666666 45666666666666665555545543 35666666
Q ss_pred cccC
Q 037889 92 ASNC 95 (339)
Q Consensus 92 ~~~~ 95 (339)
+++|
T Consensus 102 Ls~N 105 (168)
T 2ell_A 102 LSGN 105 (168)
T ss_dssp CBSS
T ss_pred ccCC
Confidence 6665
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.02 E-value=5.5e-10 Score=103.85 Aligned_cols=96 Identities=28% Similarity=0.330 Sum_probs=60.7
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+++.+|... +.++++|++|+|++|.++++ |..+.++++|++|+|++|+++.+|.. ++.+++|++|+|++|+ +..+
T Consensus 62 n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l 139 (353)
T 2z80_A 62 NRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTL 139 (353)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSS
T ss_pred CcCcccCHHH-hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-Cccc
Confidence 4455665543 66677777777777777764 44577777777777777777777654 6677777777777643 3345
Q ss_pred CC--C---CCCCCEEecccCcCCCc
Q 037889 81 PE--L---SLSLKWLDASNCKRLQS 100 (339)
Q Consensus 81 P~--~---~~~L~~L~~~~~~~l~~ 100 (339)
|. . +.+|+.|+++++..++.
T Consensus 140 ~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 140 GETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CchhhhccCCCCcEEECCCCccccc
Confidence 54 2 35667777766644433
No 39
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.02 E-value=1.9e-10 Score=117.33 Aligned_cols=94 Identities=31% Similarity=0.392 Sum_probs=82.1
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
.|++..+|.. +.++++|++|+|++|.|+.+|..|++|++|+.|+|++|.|+.+|..|+.|++|++|+|++|. ++.+|
T Consensus 233 ~n~l~~l~~~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp 309 (727)
T 4b8c_D 233 NLQIFNISAN--IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLP 309 (727)
T ss_dssp TSCCSCCCGG--GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCC
T ss_pred CCCCCCCChh--hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccC
Confidence 4678889988 56899999999999999999999999999999999999999999999999999999999864 56888
Q ss_pred CCC---CCCCEEecccCcCC
Q 037889 82 ELS---LSLKWLDASNCKRL 98 (339)
Q Consensus 82 ~~~---~~L~~L~~~~~~~l 98 (339)
..+ .+|+.|+++++...
T Consensus 310 ~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SSTTSCTTCCCEECTTSCCC
T ss_pred hhhhcCCCccEEeCCCCccC
Confidence 765 57788888876543
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.01 E-value=3.5e-10 Score=103.67 Aligned_cols=79 Identities=33% Similarity=0.502 Sum_probs=46.0
Q ss_pred CCccEEEeecCCCCc---cCccccCCCCCcEEEeec-CCCc-cCchhhhcCccCcEEEcccCCCCccCCCCC---CCCCE
Q 037889 18 SSLDRLDLRGCGLTA---IPQEIGCLSSLKELDICE-NNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS---LSLKW 89 (339)
Q Consensus 18 ~~L~~L~Ls~n~l~~---lP~~i~~l~~L~~L~Ls~-n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~~ 89 (339)
.+++.|+|++|.+++ +|..++++++|++|+|++ |.+. .+|..++.+++|++|+|++|+..+.+|..+ .+|+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 355666666666653 566666666666666663 5555 456666666666666666655555555432 45555
Q ss_pred EecccCc
Q 037889 90 LDASNCK 96 (339)
Q Consensus 90 L~~~~~~ 96 (339)
|+++++.
T Consensus 130 L~Ls~N~ 136 (313)
T 1ogq_A 130 LDFSYNA 136 (313)
T ss_dssp EECCSSE
T ss_pred EeCCCCc
Confidence 5555543
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.01 E-value=1e-09 Score=106.02 Aligned_cols=92 Identities=23% Similarity=0.339 Sum_probs=50.6
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+|+.+++.. |.++++|++|+|++|.|+.+ |..+.++++|++|+|++|.++.+|.. +..+++|++|+|++|+.....
T Consensus 42 n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 42 NRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120 (477)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred CccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC
Confidence 3444444333 55566666666666666653 55566666666666666666655532 455666666666665554444
Q ss_pred CCCC---CCCCEEecccC
Q 037889 81 PELS---LSLKWLDASNC 95 (339)
Q Consensus 81 P~~~---~~L~~L~~~~~ 95 (339)
|..+ .+|+.|++.++
T Consensus 121 ~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp TTTTTTCTTCCEEEECCT
T ss_pred hhHccccccCCEEECCCC
Confidence 4332 45555555554
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.01 E-value=8.5e-10 Score=99.37 Aligned_cols=93 Identities=26% Similarity=0.352 Sum_probs=68.8
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCC-CCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCcc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCG-LTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~-l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~ 79 (339)
|+++.+++.. +.++++|++|+|++|. +..+ |..+..+++|+.|+|++|.++.+ |..+..+++|++|++++|...+.
T Consensus 66 n~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 144 (285)
T 1ozn_A 66 NVLARIDAAA-FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144 (285)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CccceeCHhh-cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc
Confidence 4566664443 7888888888888886 7776 66788888888888888888876 45678888888888888665544
Q ss_pred CCCC---CCCCCEEecccCc
Q 037889 80 LPEL---SLSLKWLDASNCK 96 (339)
Q Consensus 80 lP~~---~~~L~~L~~~~~~ 96 (339)
.+.. +.+|+.|+++++.
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHhHhccCCCccEEECCCCc
Confidence 4332 3577888887763
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.00 E-value=1.6e-09 Score=103.95 Aligned_cols=97 Identities=26% Similarity=0.393 Sum_probs=54.2
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+++.++... |.++++|++|+|++|.|+.++ ..+.++++|+.|+|++|+++.+|. .+..+++|++|+|++|... .+
T Consensus 74 n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~ 151 (440)
T 3zyj_A 74 NQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SI 151 (440)
T ss_dssp CCCCEECTTT-TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EE
T ss_pred CcCCeeCHHH-hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-cc
Confidence 3444554433 566666666666666666643 456666666666666666666653 4566666666666664433 33
Q ss_pred CC-C---CCCCCEEecccCcCCCcC
Q 037889 81 PE-L---SLSLKWLDASNCKRLQSL 101 (339)
Q Consensus 81 P~-~---~~~L~~L~~~~~~~l~~l 101 (339)
|. . +.+|+.|++.++..+..+
T Consensus 152 ~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 152 PSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp CTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CHHHhhhCcccCEeCCCCCCCccee
Confidence 32 2 245566666555444433
No 44
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=2.1e-09 Score=89.88 Aligned_cols=70 Identities=27% Similarity=0.436 Sum_probs=34.4
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccC
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKC 74 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c 74 (339)
+++.+|+.. +..+++|++|+|++|.|+.+|.. +..+++|+.|+|++|.++.+|.. +..+++|++|+|++|
T Consensus 39 ~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 39 KLQSLPHGV-FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp CCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccEeCHHH-hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence 344444443 44555555555555555554332 34555555555555555544432 344555555555554
No 45
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.99 E-value=1.6e-09 Score=92.34 Aligned_cols=90 Identities=26% Similarity=0.286 Sum_probs=77.8
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCcc-CchhhhcCccCcEEEcccCCCCccCC
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFES-LPASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
.++.++ . +..+++|++|++++|.++. .|..++.+++|+.|+|++|.++. .|..++.+++|++|+|++|+.++.+|
T Consensus 77 ~~~~~~-~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 77 HATNYN-P--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp CCSCCG-G--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred CCCcch-h--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 455554 3 7889999999999999998 78899999999999999999995 67889999999999999988678787
Q ss_pred CC--CCCCCEEecccCc
Q 037889 82 EL--SLSLKWLDASNCK 96 (339)
Q Consensus 82 ~~--~~~L~~L~~~~~~ 96 (339)
.. +++|+.|++++|.
T Consensus 154 ~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 154 PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp GGGGCSSCCEEECTTBC
T ss_pred hhcCCCCCCEEECCCCC
Confidence 43 4789999998875
No 46
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.99 E-value=7.9e-10 Score=113.48 Aligned_cols=94 Identities=28% Similarity=0.329 Sum_probs=84.4
Q ss_pred cCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCCC-
Q 037889 8 IPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS- 84 (339)
Q Consensus 8 lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~- 84 (339)
+|.. +.++++|++|+|++|++++ +|..++++++|+.|+|++|+++ .+|..++.+++|+.|||++|+..+.+|..+
T Consensus 624 ~~~~--~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 624 TSPT--FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp CCCS--CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred Cchh--hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 4666 7889999999999999997 9999999999999999999999 899999999999999999999999999865
Q ss_pred --CCCCEEecccCcCCCcCCC
Q 037889 85 --LSLKWLDASNCKRLQSLPE 103 (339)
Q Consensus 85 --~~L~~L~~~~~~~l~~l~~ 103 (339)
.+|+.|++++|.....+|.
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GCCCCSEEECCSSEEEEECCS
T ss_pred CCCCCCEEECcCCcccccCCC
Confidence 6788999998876556654
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=3.5e-10 Score=117.30 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=74.2
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCc------------------cCcccc--CCCCCcEEEeecCCCc-cCchhh
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTA------------------IPQEIG--CLSSLKELDICENNFE-SLPASI 60 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~------------------lP~~i~--~l~~L~~L~Ls~n~l~-~lP~~i 60 (339)
+|+++.+|+. ++++++|++|+|++|+|++ +|..++ ++++|+.|+|++|++. .+|..+
T Consensus 434 ~N~L~~IP~~--l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l 511 (876)
T 4ecn_A 434 TNRITFISKA--IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511 (876)
T ss_dssp SCEEEEECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred cCcccchhHH--HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH
Confidence 3566668887 7889999999999999988 888887 8999999999998865 788888
Q ss_pred hcCccCcEEEcccCC-CCc-cCCCCC----------CCCCEEecccCc
Q 037889 61 MQLSRLTYLYLSKCN-MLL-SLPELS----------LSLKWLDASNCK 96 (339)
Q Consensus 61 ~~l~~L~~L~L~~c~-~l~-~lP~~~----------~~L~~L~~~~~~ 96 (339)
+++++|+.|+|++|+ ..+ .+|..+ ++|+.|++++|.
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 889999999999887 544 566432 378888887765
No 48
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.98 E-value=4.8e-10 Score=98.41 Aligned_cols=97 Identities=20% Similarity=0.282 Sum_probs=58.4
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCC-CCccCc-cccCCCCCcEEEeec-CCCccCc-hhhhcCccCcEEEcccCCCCc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCG-LTAIPQ-EIGCLSSLKELDICE-NNFESLP-ASIMQLSRLTYLYLSKCNMLL 78 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~-l~~lP~-~i~~l~~L~~L~Ls~-n~l~~lP-~~i~~l~~L~~L~L~~c~~l~ 78 (339)
|+++.+|+.. |.++++|++|++++|. ++.+|. .+.++++|+.|+|++ |+++.+| ..+..+++|++|++++|.. .
T Consensus 41 n~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~ 118 (239)
T 2xwt_C 41 THLRTIPSHA-FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-K 118 (239)
T ss_dssp CCCSEECTTT-TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC-C
T ss_pred CcceEECHHH-ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-c
Confidence 4556666544 6666777777777775 666554 566677777777776 6676665 3456667777777776543 3
Q ss_pred cCCC--CCCCCC---EEecccCcCCCcC
Q 037889 79 SLPE--LSLSLK---WLDASNCKRLQSL 101 (339)
Q Consensus 79 ~lP~--~~~~L~---~L~~~~~~~l~~l 101 (339)
.+|. .+.+|+ .|+++++..++.+
T Consensus 119 ~lp~~~~l~~L~~L~~L~l~~N~~l~~i 146 (239)
T 2xwt_C 119 MFPDLTKVYSTDIFFILEITDNPYMTSI 146 (239)
T ss_dssp SCCCCTTCCBCCSEEEEEEESCTTCCEE
T ss_pred cccccccccccccccEEECCCCcchhhc
Confidence 3554 224454 6666665344443
No 49
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.97 E-value=1.7e-09 Score=96.87 Aligned_cols=90 Identities=21% Similarity=0.278 Sum_probs=64.8
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~lP 81 (339)
+.++.++. +..+++|++|+|++|.++.++ .+..+++|++|+|++|.++.+|.. ++.+++|++|+|++|+..+..|
T Consensus 51 ~~i~~~~~---l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 126 (272)
T 3rfs_A 51 SDIKSVQG---IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126 (272)
T ss_dssp SCCCCCTT---GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCcccccc---cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH
Confidence 34555553 567788888888888888764 677888888888888888877644 6788888888888866555444
Q ss_pred CC---CCCCCEEecccCc
Q 037889 82 EL---SLSLKWLDASNCK 96 (339)
Q Consensus 82 ~~---~~~L~~L~~~~~~ 96 (339)
.. +.+|+.|++++|.
T Consensus 127 ~~~~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHNQ 144 (272)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHhccCCCCCEEECCCCc
Confidence 33 3577888887763
No 50
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.96 E-value=1.8e-09 Score=89.39 Aligned_cols=90 Identities=29% Similarity=0.341 Sum_probs=76.8
Q ss_pred CCCc--ccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCcc-CchhhhcCccCcEEEcccCCCCcc
Q 037889 3 RSLV--TIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFES-LPASIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 3 n~L~--~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~L~~c~~l~~ 79 (339)
+.++ .+|.. +..+++|++|+|++|.|+.+ ..+..+++|+.|+|++|.++. +|..+..+++|++|+|++|+. ..
T Consensus 34 n~l~~~~i~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~ 109 (168)
T 2ell_A 34 CKSNDGKIEGL--TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL-KD 109 (168)
T ss_dssp CBCBTTBCSSC--CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSC-CS
T ss_pred CCCChhhHHHH--HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCcc-Cc
Confidence 4566 88887 78999999999999999999 789999999999999999997 788888899999999999754 55
Q ss_pred CC--C---CCCCCCEEecccCc
Q 037889 80 LP--E---LSLSLKWLDASNCK 96 (339)
Q Consensus 80 lP--~---~~~~L~~L~~~~~~ 96 (339)
+| . .+++|+.|++++|.
T Consensus 110 ~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 110 ISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp SGGGGGGSSCSCCCEEECCSSG
T ss_pred chhHHHHhcCCCCCEEEeeCCc
Confidence 54 2 24689999998875
No 51
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=1.8e-09 Score=99.96 Aligned_cols=90 Identities=23% Similarity=0.239 Sum_probs=74.3
Q ss_pred CCCcccCCcCcCCCCCCccEEEeec-CCCCccC-ccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRG-CGLTAIP-QEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~-n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~ 79 (339)
|+|+.+|. +..+++|+.|+|++ |.|+.+| ..|++|++|+.|+|++|+|+.+| ..|..|++|++|+|++|+.. .
T Consensus 19 n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~ 94 (347)
T 2ifg_A 19 GALDSLHH---LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94 (347)
T ss_dssp CCCTTTTT---SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-C
T ss_pred CCCCccCC---CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-e
Confidence 37899998 47889999999996 9999977 57999999999999999999876 56899999999999996554 5
Q ss_pred CCC-CC--CCCCEEecccCc
Q 037889 80 LPE-LS--LSLKWLDASNCK 96 (339)
Q Consensus 80 lP~-~~--~~L~~L~~~~~~ 96 (339)
+|. .+ .+|+.|++.++.
T Consensus 95 ~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 95 LSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSTTTCSCCCCEEECCSSC
T ss_pred eCHHHcccCCceEEEeeCCC
Confidence 554 33 238888887754
No 52
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.96 E-value=9.1e-10 Score=92.14 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=62.0
Q ss_pred CCCCCCccEEEeecCCCCccCccccCCC-CCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC-C---CCCCC
Q 037889 14 SSGLSSLDRLDLRGCGLTAIPQEIGCLS-SLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE-L---SLSLK 88 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~-~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~-~---~~~L~ 88 (339)
+.++.+|+.|+|++|.++.+|. +..+. +|+.|+|++|.++.+ ..+..+++|++|+|++|... .+|. . +++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCC
Confidence 3456677777777777777754 33333 777777777777766 46777777777777775543 4443 2 36677
Q ss_pred EEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 89 WLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 89 ~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
.|+++++.- ..++. ...+..++.+....++.+.
T Consensus 92 ~L~L~~N~i-~~~~~-~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 92 ELILTNNSL-VELGD-LDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp EEECCSCCC-CCGGG-GGGGGGCTTCCEEECCSSG
T ss_pred EEECCCCcC-Ccchh-hHhhhcCCCCCEEEecCCC
Confidence 777776542 33322 0134444444444444443
No 53
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.95 E-value=2.1e-09 Score=108.06 Aligned_cols=119 Identities=21% Similarity=0.215 Sum_probs=67.2
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCC--------CCCcEEEeecCCCccCchhhh--cCccCcEEEcc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCL--------SSLKELDICENNFESLPASIM--QLSRLTYLYLS 72 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l--------~~L~~L~Ls~n~l~~lP~~i~--~l~~L~~L~L~ 72 (339)
|+++.+|..+ +..+++|++|+|++|.++.+|..+... ++|+.|+|++|+++.+|..+. .+++|+.|+|+
T Consensus 443 N~l~~lp~~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls 521 (636)
T 4eco_A 443 NQISKFPKEL-FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521 (636)
T ss_dssp SCCCSCCTHH-HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECC
T ss_pred CccCcCCHHH-HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECC
Confidence 4455566553 445666666666666666666543322 267777777777777776665 67777777777
Q ss_pred cCCCCccCCCCC---CCCCEEecccCc---CCCcCCCCCCCccccccccccccCCCC
Q 037889 73 KCNMLLSLPELS---LSLKWLDASNCK---RLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 73 ~c~~l~~lP~~~---~~L~~L~~~~~~---~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
+|+..+ +|..+ .+|+.|+++++. ........|..+..++.+....++.+.
T Consensus 522 ~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 522 YNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp SSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 655544 66533 456666665433 112223344455555555555555444
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.94 E-value=2.1e-09 Score=106.89 Aligned_cols=93 Identities=24% Similarity=0.260 Sum_probs=59.6
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+++.+|+.. |.++++|++|+|++|.++++ |..|+++++|++|+|++|.++.+ |..|+++++|++|+|++|...+..
T Consensus 42 n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 42 NPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred CCcCEeChhh-ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence 4555665543 66777777777777777774 55667777777777777777765 566777777777777775544433
Q ss_pred CCCC---CCCCEEecccCc
Q 037889 81 PELS---LSLKWLDASNCK 96 (339)
Q Consensus 81 P~~~---~~L~~L~~~~~~ 96 (339)
|..+ .+|+.|++++|.
T Consensus 121 ~~~~~~l~~L~~L~L~~n~ 139 (606)
T 3vq2_A 121 SFPIGQLITLKKLNVAHNF 139 (606)
T ss_dssp SSCCTTCTTCCEEECCSSC
T ss_pred ccccCCCCCCCEEeCCCCc
Confidence 3322 456666666654
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.94 E-value=2.1e-09 Score=102.99 Aligned_cols=92 Identities=26% Similarity=0.324 Sum_probs=64.5
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecC-CCCccCc-cccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGC-GLTAIPQ-EIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n-~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+|+.+|... |.++++|++|+|++| .+..+|. .+.++++|+.|+|++|+++.+| .+..+++|+.|+|++|+..+..
T Consensus 146 N~i~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 146 NPIESIPSYA-FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp CCCCEECTTT-TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEEC
T ss_pred CcccccCHHH-hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccC
Confidence 5667777765 777788888888774 4555554 5777788888888888887777 4777778888888877655555
Q ss_pred CCCC---CCCCEEecccCc
Q 037889 81 PELS---LSLKWLDASNCK 96 (339)
Q Consensus 81 P~~~---~~L~~L~~~~~~ 96 (339)
|..+ .+|+.|++.++.
T Consensus 224 ~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp TTTTTTCTTCCEEECTTCC
T ss_pred hhhhccCccCCEEECCCCc
Confidence 5543 566777776654
No 56
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=2.1e-09 Score=90.03 Aligned_cols=75 Identities=27% Similarity=0.403 Sum_probs=66.6
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCC
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNML 77 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l 77 (339)
.|+|+.+++.. |.++++|++|+|++|+|+.+|.. +..+++|+.|+|++|+|+.+|.. +..+++|++|+|++|...
T Consensus 42 ~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 42 NNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCccccCHHH-hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 47788886665 89999999999999999998876 68999999999999999999875 899999999999996543
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.93 E-value=1.7e-09 Score=100.42 Aligned_cols=116 Identities=22% Similarity=0.233 Sum_probs=88.6
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCch--hhhcCccCcEEEcccCCCCcc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPA--SIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~--~i~~l~~L~~L~L~~c~~l~~ 79 (339)
|+++.+++.. |.++++|++|+|++|.++++|.. ++++++|++|+|++|+++.+|. .+..+++|++|++++|+.++.
T Consensus 86 n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 86 NGINTIEEDS-FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CccCccCHhh-cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence 5677886654 89999999999999999998876 8999999999999999999987 688999999999999876666
Q ss_pred CC-CCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCC
Q 037889 80 LP-ELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKH 122 (339)
Q Consensus 80 lP-~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~ 122 (339)
+| ..+ .+|+.|+++++......+ ..+..++.+....++.+
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEP---KSLKSIQNVSHLILHMK 208 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECT---TTTTTCSEEEEEEEECS
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCH---HHHhccccCCeecCCCC
Confidence 64 333 567788888765333223 33444444444444433
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.93 E-value=2.6e-09 Score=102.74 Aligned_cols=91 Identities=29% Similarity=0.264 Sum_probs=47.4
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecC-CCCccCc-cccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGC-GLTAIPQ-EIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n-~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+|+.+|... |.++++|+.|+|++| .+..+|. .+.++++|+.|+|++|+++.+| .+..+++|+.|+|++|...+..
T Consensus 157 N~l~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 157 NPIESIPSYA-FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp CCCCEECTTT-TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEEC
T ss_pred CCcceeCHhH-HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccC
Confidence 4455555544 555566666666553 3444443 3555555555655555555555 3555555555555555444444
Q ss_pred CCCC---CCCCEEecccC
Q 037889 81 PELS---LSLKWLDASNC 95 (339)
Q Consensus 81 P~~~---~~L~~L~~~~~ 95 (339)
|..+ .+|+.|++.++
T Consensus 235 ~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp GGGGTTCTTCCEEECTTS
T ss_pred cccccCccCCCEEEeCCC
Confidence 4322 34555555544
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=1.8e-09 Score=112.04 Aligned_cols=91 Identities=21% Similarity=0.243 Sum_probs=49.2
Q ss_pred CCCcccCC--cCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCcc-CcEEEcccCCCCcc
Q 037889 3 RSLVTIPA--SILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSR-LTYLYLSKCNMLLS 79 (339)
Q Consensus 3 n~L~~lP~--~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~-L~~L~L~~c~~l~~ 79 (339)
|+++.+|. . +.++++|+.|+|++|.++.+| .++.+++|+.|+|++|.++.+|..+..+++ |+.|+|++|+.. .
T Consensus 558 N~L~~ip~~~~--l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 558 NNLEEFPASAS--LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp SCCCBCCCHHH--HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred CcCCccCChhh--hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-c
Confidence 34445555 4 455555555555555555555 555555555555555555555555555555 555655554433 5
Q ss_pred CCCCCC-----CCCEEecccCcC
Q 037889 80 LPELSL-----SLKWLDASNCKR 97 (339)
Q Consensus 80 lP~~~~-----~L~~L~~~~~~~ 97 (339)
+|..+. +|+.|++++|..
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCT
T ss_pred CchhhhccccCCCCEEECcCCcC
Confidence 554331 255555555443
No 60
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.93 E-value=1.8e-09 Score=107.12 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=75.1
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccC--chhhhcCccCcEEEcccCCCCcc
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESL--PASIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~l--P~~i~~l~~L~~L~L~~c~~l~~ 79 (339)
-|+|+.+|.. ++++++|+.|+|++|.|+++| .++.+++|+.|+|++|.|+.+ |..++.+++|+.|+|++|+..+.
T Consensus 472 ~N~l~~lp~~--~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 472 HNRLRALPPA--LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SSCCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred cccccccchh--hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 4788899998 899999999999999999999 899999999999999999988 89999999999999999766555
Q ss_pred CCCC------CCCCCEEe
Q 037889 80 LPEL------SLSLKWLD 91 (339)
Q Consensus 80 lP~~------~~~L~~L~ 91 (339)
.|.. +++|+.|+
T Consensus 549 ~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 549 EGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCTTHHHHHCTTCSEEE
T ss_pred ccHHHHHHHHCcccCccC
Confidence 4432 34566553
No 61
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.92 E-value=3.3e-09 Score=94.75 Aligned_cols=110 Identities=18% Similarity=0.292 Sum_probs=83.9
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
++++.++ . +..+++|++|++++|.|+.+| .+..+++|+.|+|++|.++.+|. +..+++|++|+|++|+. ..+|.
T Consensus 29 ~~i~~~~-~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l-~~l~~ 102 (263)
T 1xeu_A 29 QSVTDLV-S--QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL-KNLNG 102 (263)
T ss_dssp SCTTSEE-C--HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC-SCCTT
T ss_pred CCccccc-c--hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc-CCcCc
Confidence 4566666 3 567899999999999999998 68899999999999999999987 99999999999998654 44554
Q ss_pred CC-CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 83 LS-LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 83 ~~-~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
.. .+|+.|++++|. ++.++ .+..++.+....++.+.
T Consensus 103 ~~~~~L~~L~L~~N~-l~~~~----~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 103 IPSACLSRLFLDNNE-LRDTD----SLIHLKNLEILSIRNNK 139 (263)
T ss_dssp CCCSSCCEEECCSSC-CSBSG----GGTTCTTCCEEECTTSC
T ss_pred cccCcccEEEccCCc-cCCCh----hhcCcccccEEECCCCc
Confidence 33 789999998874 33332 35555566665565554
No 62
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.91 E-value=1.1e-09 Score=88.95 Aligned_cols=87 Identities=23% Similarity=0.368 Sum_probs=72.0
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCccCc--hhhhcCccCcEEEcccCCCCcc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFESLP--ASIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~~lP--~~i~~l~~L~~L~L~~c~~l~~ 79 (339)
|+++.+ +. +..+++|++|+|++|.++. +|..+..+++|+.|++++|.++.+| ..++.+++|++|++++|... .
T Consensus 52 n~l~~~-~~--~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~ 127 (149)
T 2je0_A 52 VGLTSI-AN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-N 127 (149)
T ss_dssp SCCCCC-TT--CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-G
T ss_pred CCCCCc-hh--hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-c
Confidence 456666 44 7899999999999999999 8888888999999999999999876 78999999999999997554 4
Q ss_pred CCC----C---CCCCCEEecc
Q 037889 80 LPE----L---SLSLKWLDAS 93 (339)
Q Consensus 80 lP~----~---~~~L~~L~~~ 93 (339)
+|. . +++|+.|+++
T Consensus 128 ~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 128 LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp STTHHHHHHHHCTTCCEETTB
T ss_pred hHHHHHHHHHHCCCcccccCC
Confidence 443 2 3567777654
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.91 E-value=2.3e-09 Score=106.59 Aligned_cols=94 Identities=28% Similarity=0.268 Sum_probs=80.5
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCc-c
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLL-S 79 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~-~ 79 (339)
|+++.+++.. |.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+| ..++++++|++|++++|...+ .
T Consensus 66 n~l~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 144 (606)
T 3vq2_A 66 CEIETIEDKA-WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144 (606)
T ss_dssp CCCCEECTTT-TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC
T ss_pred CcccccCHHH-hhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee
Confidence 5677886655 89999999999999999996 888999999999999999999887 779999999999999987765 6
Q ss_pred CCCCC---CCCCEEecccCcC
Q 037889 80 LPELS---LSLKWLDASNCKR 97 (339)
Q Consensus 80 lP~~~---~~L~~L~~~~~~~ 97 (339)
+|..+ .+|+.|+++++..
T Consensus 145 lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CCGGGGTCTTCCEEECCSSCC
T ss_pred chHhHhhcCCCCEEEccCCcc
Confidence 78754 6788888888653
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.91 E-value=4e-09 Score=103.54 Aligned_cols=98 Identities=24% Similarity=0.302 Sum_probs=60.1
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCc-c
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLL-S 79 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~-~ 79 (339)
|+++.+++.. |.++++|++|+|++|.++.+ |..++++++|++|+|++|.++.+|.. |+.+++|++|+|++|...+ .
T Consensus 36 n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 36 NKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp SCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred CccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence 3455554333 66677777777777777764 35577777777777777777766543 6777777777777765443 2
Q ss_pred CCCC---CCCCCEEecccCcCCCcC
Q 037889 80 LPEL---SLSLKWLDASNCKRLQSL 101 (339)
Q Consensus 80 lP~~---~~~L~~L~~~~~~~l~~l 101 (339)
.|.. ..+|+.|++.++..+..+
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~ 139 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEI 139 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred hhhhhhccCCccEEECCCCcccccc
Confidence 3332 246666777666544433
No 65
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.91 E-value=3.8e-09 Score=105.00 Aligned_cols=117 Identities=26% Similarity=0.227 Sum_probs=88.6
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
++++.+|+.. |.++++|++|++++|.++++|..+..+++|++|++++|.++.+ |..+..+++|++|++++|...+.+|
T Consensus 264 n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 264 HYFFNISSNT-FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp CCCSSCCTTT-TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred CccCccCHHH-hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 4677777776 8899999999999999999999999999999999999999977 5688999999999999988877777
Q ss_pred CC----CCCCCEEecccCcCCCcCCCCCCCccccccccccccCC
Q 037889 82 EL----SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121 (339)
Q Consensus 82 ~~----~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~ 121 (339)
.. +.+|+.|+++++... .+...+..+..++.+....++.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~ 385 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSY 385 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCC-EEEESTTTTTTCTTCCEEECCS
T ss_pred hhhhhccCcCCEEECCCCccc-cccCcchhcccCCCCCEEECCC
Confidence 53 367888888876532 2221233344444444444433
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.90 E-value=4.3e-09 Score=94.26 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=75.3
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccCC
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
++..+|.. + .++|++|+|++|.++++|. .+.++++|++|+|++|.++.+|. .+..+++|++|+|++|...+..|
T Consensus 18 ~l~~ip~~--l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 18 NFYKIPDN--L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp CCSSCCSS--S--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CccccCCC--C--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 35667877 3 2578888888888888655 78888888888888888887764 67888888888888876655554
Q ss_pred CCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCC
Q 037889 82 ELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKH 122 (339)
Q Consensus 82 ~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~ 122 (339)
..+ .+|+.|++.++.... ++. ..+..++.+....++.+
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~-~~~--~~~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLAS-LEN--FPIGHLKTLKELNVAHN 134 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCC-STT--CCCTTCTTCCEEECCSS
T ss_pred hhhcCCccccEEECCCCCccc-cCc--hhcccCCCCCEEECcCC
Confidence 433 577888887764322 221 12444444444444443
No 67
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=3.4e-09 Score=88.31 Aligned_cols=76 Identities=25% Similarity=0.394 Sum_probs=66.9
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCc
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLL 78 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~ 78 (339)
.|+|+.+++.. |.++++|++|+|++|+|+.+|.. +..+++|+.|+|++|+|+.+|. .+..+++|++|+|++|....
T Consensus 39 ~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 39 DNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCcCCccChhh-hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 47888886665 89999999999999999998765 6899999999999999999986 48899999999999976543
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.89 E-value=2e-09 Score=97.86 Aligned_cols=87 Identities=26% Similarity=0.376 Sum_probs=53.1
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccC---chhhhcCccCcEEEcccCCCCcc
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESL---PASIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~l---P~~i~~l~~L~~L~L~~c~~l~~ 79 (339)
.++.+|..+ .++|++|+|++|.++++|.. +.++++|+.|+|++|.++.+ |..+..+++|++|+|++|.. ..
T Consensus 18 ~l~~ip~~~----~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~ 92 (306)
T 2z66_A 18 GLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-IT 92 (306)
T ss_dssp CCSSCCSCC----CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EE
T ss_pred CcccCCCCC----CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-cc
Confidence 466666652 25667777777777776654 56677777777777776644 45566666677777766443 33
Q ss_pred CCCC---CCCCCEEecccC
Q 037889 80 LPEL---SLSLKWLDASNC 95 (339)
Q Consensus 80 lP~~---~~~L~~L~~~~~ 95 (339)
+|.. ..+|+.|+++++
T Consensus 93 l~~~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHS 111 (306)
T ss_dssp EEEEEETCTTCCEEECTTS
T ss_pred ChhhcCCCCCCCEEECCCC
Confidence 4432 245666666554
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.89 E-value=8e-09 Score=94.96 Aligned_cols=90 Identities=22% Similarity=0.307 Sum_probs=75.2
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~ 79 (339)
.++++.+|..+ .++|++|+|++|.++++ |..+..+++|+.|+|++|.++.++ ..+..+++|+.|+|++|+ +..
T Consensus 180 ~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 254 (330)
T 1xku_A 180 DTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVK 254 (330)
T ss_dssp SSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSS
T ss_pred CCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-Ccc
Confidence 35677888873 37899999999999995 778999999999999999999776 478999999999999965 557
Q ss_pred CCCCC---CCCCEEecccCc
Q 037889 80 LPELS---LSLKWLDASNCK 96 (339)
Q Consensus 80 lP~~~---~~L~~L~~~~~~ 96 (339)
+|..+ .+|+.|++.++.
T Consensus 255 lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSC
T ss_pred CChhhccCCCcCEEECCCCc
Confidence 88754 678889998865
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.89 E-value=3.5e-09 Score=103.39 Aligned_cols=81 Identities=23% Similarity=0.227 Sum_probs=44.0
Q ss_pred CCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCcc---CchhhhcCccCcEEEcccCCCCccCCCC----CCC
Q 037889 15 SGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFES---LPASIMQLSRLTYLYLSKCNMLLSLPEL----SLS 86 (339)
Q Consensus 15 ~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~~---lP~~i~~l~~L~~L~L~~c~~l~~lP~~----~~~ 86 (339)
..+++|++|+|++|.+++ +|..++.+++|+.|+|++|+++. +|..++.+++|++|+|++|+..+.+|.. +.+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 345556666666666655 55555666666666666666553 3344555566666666655544434432 244
Q ss_pred CCEEecccC
Q 037889 87 LKWLDASNC 95 (339)
Q Consensus 87 L~~L~~~~~ 95 (339)
|+.|++++|
T Consensus 401 L~~L~Ls~N 409 (520)
T 2z7x_B 401 LLSLNMSSN 409 (520)
T ss_dssp CCEEECCSS
T ss_pred CCEEECcCC
Confidence 555555544
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.89 E-value=3.5e-09 Score=94.89 Aligned_cols=119 Identities=22% Similarity=0.210 Sum_probs=89.9
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~ 79 (339)
.|+++.+|... +.++++|++|+|++|.++++|. .+..+++|++|+|++|.++.+| ..+..+++|++|++++|+....
T Consensus 37 ~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 115 (276)
T 2z62_A 37 FNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115 (276)
T ss_dssp TCCCCEECTTT-TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS
T ss_pred CCcccccCHhH-hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcccc
Confidence 36788888754 8899999999999999999654 7999999999999999999776 6789999999999999766554
Q ss_pred CCCC---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 80 LPEL---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 80 lP~~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
.+.. +.+|+.|+++++..- .+ ..+..+..++.+....++.+.
T Consensus 116 ~~~~~~~l~~L~~L~l~~n~l~-~~-~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 116 ENFPIGHLKTLKELNVAHNLIQ-SF-KLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TTCCCTTCTTCCEEECCSSCCC-CC-CCCGGGGGCTTCCEEECCSSC
T ss_pred CchhcccCCCCCEEECcCCccc-ee-cCchhhccCCCCCEEECCCCC
Confidence 4433 367889999886532 21 124455556666555665554
No 72
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.88 E-value=5.1e-09 Score=100.35 Aligned_cols=83 Identities=22% Similarity=0.195 Sum_probs=55.9
Q ss_pred CCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccCCCCC---CCCC
Q 037889 14 SSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSLPELS---LSLK 88 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~ 88 (339)
+..+++|++|+|++|.++++ |..+..+++|+.|+|++|.++.+ |..++.+++|++|+|++|+..+..|..+ ++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 66777777777777777774 55677777777777777777755 4556677777777777766655555433 5666
Q ss_pred EEecccCc
Q 037889 89 WLDASNCK 96 (339)
Q Consensus 89 ~L~~~~~~ 96 (339)
.|+++++.
T Consensus 375 ~L~L~~N~ 382 (455)
T 3v47_A 375 ELALDTNQ 382 (455)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 77776643
No 73
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.88 E-value=3.5e-09 Score=98.95 Aligned_cols=120 Identities=19% Similarity=0.220 Sum_probs=90.6
Q ss_pred CCCCcccCCcCcCC-CCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCc
Q 037889 2 CRSLVTIPASILSS-GLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLL 78 (339)
Q Consensus 2 Cn~L~~lP~~~~~~-~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~ 78 (339)
-|+|+.+|... +. ++++|++|+|++|+|+++| ..+..+++|+.|+|++|+|+.+|. .|..+++|+.|+|++|+...
T Consensus 48 ~N~l~~l~~~~-~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 48 HNNLSRLRAEW-TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp SSCCCEECTTS-SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCccChhh-hhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence 46788898886 66 8999999999999999976 569999999999999999998875 58899999999999987766
Q ss_pred cCCCCC---CCCCEEecccCcCCCcCCC-CCCCccccccccccccCCCC
Q 037889 79 SLPELS---LSLKWLDASNCKRLQSLPE-IPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 79 ~lP~~~---~~L~~L~~~~~~~l~~l~~-~~~~l~~l~~~~~~~l~~~~ 123 (339)
..|..+ .+|+.|+++++. ++.++. ....+..++.+...+++.+.
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 127 VDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred ECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 666544 688899998864 333332 12112445555555555554
No 74
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.88 E-value=3.3e-09 Score=88.68 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=74.6
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhh-hcCccCcEEEcccCCCCccCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASI-MQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i-~~l~~L~~L~L~~c~~l~~lP 81 (339)
|+++.+|.. ....++|++|+|++|.|+++ ..++.+++|+.|+|++|.++.+|+.+ ..+++|++|+|++|.. +.+|
T Consensus 29 n~l~~i~~~--~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~ 104 (176)
T 1a9n_A 29 YKIPVIENL--GATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELG 104 (176)
T ss_dssp SCCCSCCCG--GGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGG
T ss_pred CCCchhHHh--hhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-Ccch
Confidence 567777653 33334999999999999999 67999999999999999999998665 8999999999999654 6677
Q ss_pred C--C---CCCCCEEecccCcC
Q 037889 82 E--L---SLSLKWLDASNCKR 97 (339)
Q Consensus 82 ~--~---~~~L~~L~~~~~~~ 97 (339)
. . +++|+.|++.++..
T Consensus 105 ~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 105 DLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp GGGGGGGCTTCCEEECCSSGG
T ss_pred hhHhhhcCCCCCEEEecCCCC
Confidence 5 2 36889999988753
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.87 E-value=7.6e-09 Score=95.26 Aligned_cols=89 Identities=22% Similarity=0.249 Sum_probs=68.9
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+++.+|..+ .++|++|+|++|.++.++ ..+..+++|+.|+|++|.++.+| ..+..+++|+.|+|++|+ +..+
T Consensus 182 n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l 256 (332)
T 2ft3_A 182 AKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRV 256 (332)
T ss_dssp SBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBC
T ss_pred CCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-Ceec
Confidence 5677788773 268888889998888854 67888888999999999888776 468888889999998864 4477
Q ss_pred CCCC---CCCCEEecccCc
Q 037889 81 PELS---LSLKWLDASNCK 96 (339)
Q Consensus 81 P~~~---~~L~~L~~~~~~ 96 (339)
|..+ .+|+.|+++++.
T Consensus 257 p~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CTTGGGCTTCCEEECCSSC
T ss_pred ChhhhcCccCCEEECCCCC
Confidence 7644 578888888754
No 76
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.87 E-value=9.7e-09 Score=94.40 Aligned_cols=88 Identities=28% Similarity=0.405 Sum_probs=67.8
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccCC
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
.++.+|.. + .++|++|+|++|.|+++|. .++++++|++|+|++|.++.+ |..+..+++|++|+|++|. +..+|
T Consensus 42 ~l~~lp~~--~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~ 116 (330)
T 1xku_A 42 GLEKVPKD--L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELP 116 (330)
T ss_dssp CCCSCCCS--C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCC
T ss_pred CccccCcc--C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccC
Confidence 57778876 3 3678888888888888765 688888888888888888876 6788888888888888855 44566
Q ss_pred CC-CCCCCEEecccCc
Q 037889 82 EL-SLSLKWLDASNCK 96 (339)
Q Consensus 82 ~~-~~~L~~L~~~~~~ 96 (339)
.. +.+|+.|+++++.
T Consensus 117 ~~~~~~L~~L~l~~n~ 132 (330)
T 1xku_A 117 EKMPKTLQELRVHENE 132 (330)
T ss_dssp SSCCTTCCEEECCSSC
T ss_pred hhhcccccEEECCCCc
Confidence 53 4678888887754
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.86 E-value=1.5e-08 Score=92.63 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=68.8
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
+.++.+| . +..+++|++|+|++|.++.+|. +..+++|+.|+|++|.++.+| .+..+++|++|+|++|.. ..+|.
T Consensus 51 ~~i~~l~-~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l-~~~~~ 124 (308)
T 1h6u_A 51 TGVTTIE-G--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQI-TDVTP 124 (308)
T ss_dssp SCCCCCT-T--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCC-CCCGG
T ss_pred CCccCch-h--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCC-CCchh
Confidence 4567776 3 6788899999999999988877 888899999999999988887 688888899999988654 34553
Q ss_pred --CCCCCCEEecccCc
Q 037889 83 --LSLSLKWLDASNCK 96 (339)
Q Consensus 83 --~~~~L~~L~~~~~~ 96 (339)
.+.+|+.|++++|.
T Consensus 125 l~~l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQ 140 (308)
T ss_dssp GTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCc
Confidence 23678888887764
No 78
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.86 E-value=7e-09 Score=100.20 Aligned_cols=95 Identities=26% Similarity=0.345 Sum_probs=78.4
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
++++.+|..+ .++|+.|+|++|+|+++ |..|.++++|+.|+|++|.++.+ |..|.++++|++|+|++|+ +..+
T Consensus 21 ~~l~~ip~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~ 95 (477)
T 2id5_A 21 KRFVAVPEGI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLI 95 (477)
T ss_dssp CCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSC
T ss_pred CCcCcCCCCC----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCcc
Confidence 4688999883 46899999999999996 67899999999999999999977 7889999999999999965 4556
Q ss_pred CC-C---CCCCCEEecccCcCCCcCC
Q 037889 81 PE-L---SLSLKWLDASNCKRLQSLP 102 (339)
Q Consensus 81 P~-~---~~~L~~L~~~~~~~l~~l~ 102 (339)
|. . +.+|+.|+++++......+
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred CcccccCCCCCCEEECCCCccccCCh
Confidence 54 3 3789999999876443333
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.85 E-value=6.1e-09 Score=101.64 Aligned_cols=90 Identities=24% Similarity=0.264 Sum_probs=70.9
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
++|+.+|.. +. ++|++|+|++|.++++| ..+.++++|++|+|++|+++.+ |..|+.+++|++|+|++|+.. .+
T Consensus 10 n~l~~ip~~--~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 84 (520)
T 2z7x_B 10 NGLIHVPKD--LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KI 84 (520)
T ss_dssp SCCSSCCCS--CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EE
T ss_pred CCccccccc--cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ec
Confidence 678888887 33 78888999999888865 5788888899999999888876 678888888999999886544 56
Q ss_pred CC-CCCCCCEEecccCcC
Q 037889 81 PE-LSLSLKWLDASNCKR 97 (339)
Q Consensus 81 P~-~~~~L~~L~~~~~~~ 97 (339)
|. ...+|+.|++++|..
T Consensus 85 p~~~l~~L~~L~L~~N~l 102 (520)
T 2z7x_B 85 SCHPTVNLKHLDLSFNAF 102 (520)
T ss_dssp ECCCCCCCSEEECCSSCC
T ss_pred CccccCCccEEeccCCcc
Confidence 65 356788888887653
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.85 E-value=5.8e-09 Score=105.19 Aligned_cols=92 Identities=24% Similarity=0.202 Sum_probs=47.0
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccCC
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
+++.+|+.. |.++++|++|+|++|.++++ |..++++++|++|+|++|.++.+|. .|+.+++|++|+|++|+..+..|
T Consensus 36 ~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 114 (680)
T 1ziw_A 36 QLRRLPAAN-FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114 (680)
T ss_dssp CCCCCCGGG-GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS
T ss_pred CCCCcCHHH-HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh
Confidence 344444432 44555555555555555553 4445555555555555555555553 35555666666666544433222
Q ss_pred CCC---CCCCEEecccCc
Q 037889 82 ELS---LSLKWLDASNCK 96 (339)
Q Consensus 82 ~~~---~~L~~L~~~~~~ 96 (339)
..+ .+|+.|++++|.
T Consensus 115 ~~~~~l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNG 132 (680)
T ss_dssp CTTTTCTTCCEEECCSSC
T ss_pred hHccccCCCCEEECCCCc
Confidence 322 455555555543
No 81
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.85 E-value=3e-09 Score=100.10 Aligned_cols=91 Identities=22% Similarity=0.321 Sum_probs=61.2
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCC
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
.++.+|+.+ +..+++|++|+|++|.++.+| ..+..+++|++|+|++|.++.+| ..++.+++|++|+|++|.. ..+|
T Consensus 56 ~l~~l~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~ 133 (390)
T 3o6n_A 56 TMRKLPAAL-LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLP 133 (390)
T ss_dssp EESEECTHH-HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCC
T ss_pred chhhCChhH-hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc-CcCC
Confidence 455666664 566777777777777777754 36777777777777777777664 4467777777777777543 3455
Q ss_pred CC----CCCCCEEecccCc
Q 037889 82 EL----SLSLKWLDASNCK 96 (339)
Q Consensus 82 ~~----~~~L~~L~~~~~~ 96 (339)
.. +.+|+.|+++++.
T Consensus 134 ~~~~~~l~~L~~L~L~~n~ 152 (390)
T 3o6n_A 134 RGIFHNTPKLTTLSMSNNN 152 (390)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHhcCCCCCcEEECCCCc
Confidence 32 3567777777654
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.84 E-value=1.1e-08 Score=101.05 Aligned_cols=114 Identities=24% Similarity=0.308 Sum_probs=86.2
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
++|+.+|..+ .++|++|+|++|.|+++| ..+.++++|++|+|++|.++.+ |..|..+++|++|+|++|+. ..+
T Consensus 41 ~~L~~ip~~~----~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l 115 (562)
T 3a79_B 41 RNLTHVPKDL----PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QNI 115 (562)
T ss_dssp SCCCSCCTTS----CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC-CEE
T ss_pred CCCccCCCCC----CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC-Ccc
Confidence 5688899873 278999999999999976 5799999999999999999977 57799999999999999664 467
Q ss_pred CC-CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 81 PE-LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 81 P~-~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
|. .+.+|+.|+++++.. +.++ .+..+..++.+....++.+.
T Consensus 116 p~~~l~~L~~L~Ls~N~l-~~l~-~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 116 SCCPMASLRHLDLSFNDF-DVLP-VCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CSCCCTTCSEEECCSSCC-SBCC-CCGGGGGCTTCCEEEEECSB
T ss_pred CccccccCCEEECCCCCc-cccC-chHhhcccCcccEEecCCCc
Confidence 75 457899999988753 3222 22445555555555555443
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.84 E-value=1.6e-08 Score=92.35 Aligned_cols=78 Identities=27% Similarity=0.397 Sum_probs=57.8
Q ss_pred CCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC--CCCCCEEecc
Q 037889 16 GLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL--SLSLKWLDAS 93 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~--~~~L~~L~~~ 93 (339)
.+++|++|++++|.++.+| .+..+++|+.|+|++|.++.+|. +..+++|++|+|++|+ +..+|.. +.+|+.|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECC
Confidence 4677888888888888776 57778888888888888887776 7788888888888755 4445542 3577788777
Q ss_pred cCc
Q 037889 94 NCK 96 (339)
Q Consensus 94 ~~~ 96 (339)
+|.
T Consensus 116 ~n~ 118 (308)
T 1h6u_A 116 STQ 118 (308)
T ss_dssp TSC
T ss_pred CCC
Confidence 764
No 84
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.84 E-value=1.3e-08 Score=95.71 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=78.5
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l 80 (339)
++++.+|+.. |..+++|++|+|++|.++.+ |..++.+++|++|+|++|.++.+|.. ++.+++|++|++++|...+..
T Consensus 79 n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 79 LQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CcccccChhh-ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 5677887755 89999999999999999996 45689999999999999999999976 589999999999998776665
Q ss_pred CCCC---CCCCEEecccCc
Q 037889 81 PELS---LSLKWLDASNCK 96 (339)
Q Consensus 81 P~~~---~~L~~L~~~~~~ 96 (339)
|..+ .+|+.|+++++.
T Consensus 158 ~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp TTTTSSCTTCCEEECCSSC
T ss_pred hhhccCCCCCCEEECCCCc
Confidence 6543 678899888764
No 85
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.84 E-value=4.3e-09 Score=103.32 Aligned_cols=102 Identities=23% Similarity=0.265 Sum_probs=82.9
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCcc--CchhhhcCccCcEEEcccCCCCc
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFES--LPASIMQLSRLTYLYLSKCNMLL 78 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~--lP~~i~~l~~L~~L~L~~c~~l~ 78 (339)
.|+++.+|+.. |.++++|++|+|++|.++++|.. ++++++|++|+|++|.++. +|..++.+++|++|++++|...+
T Consensus 59 ~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~ 137 (549)
T 2z81_A 59 SSRINTIEGDA-FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137 (549)
T ss_dssp TSCCCEECTTT-TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred CCCcCccChhh-ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc
Confidence 35677887655 89999999999999999997765 9999999999999999995 46789999999999999988788
Q ss_pred cCCC-CC---CCCCEEecccCcCCCcCCCC
Q 037889 79 SLPE-LS---LSLKWLDASNCKRLQSLPEI 104 (339)
Q Consensus 79 ~lP~-~~---~~L~~L~~~~~~~l~~l~~~ 104 (339)
.+|. .+ .+|+.|++.++......+..
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHhhhhcccccCeeeccCCcccccChhh
Confidence 8874 33 56778888876644434433
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.83 E-value=1.9e-08 Score=91.21 Aligned_cols=110 Identities=22% Similarity=0.234 Sum_probs=77.1
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
+.++.+|. +..+++|++|+|++|.++.++. +..+++|+.|+|++|.++.+|. +..+++|++|+|++|.. ..+|.
T Consensus 56 ~~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i-~~~~~ 129 (291)
T 1h6t_A 56 SDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGI-SDING 129 (291)
T ss_dssp SCCCCCTT---GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCC-CCCGG
T ss_pred CCcccChh---HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcC-CCChh
Confidence 45666653 5678888888888888888776 8888888888888888888774 88888888888888654 44554
Q ss_pred C--CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 83 L--SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 83 ~--~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
. +.+|+.|++++|.. +.+ ..+..++.+....++.+.
T Consensus 130 l~~l~~L~~L~l~~n~l-~~~----~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKI-TDI----TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp GGGCTTCCEEECCSSCC-CCC----GGGGGCTTCSEEECCSSC
T ss_pred hcCCCCCCEEEccCCcC-Ccc----hhhccCCCCCEEEccCCc
Confidence 2 36788888887642 222 234455555555555443
No 87
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.83 E-value=9e-09 Score=102.33 Aligned_cols=93 Identities=19% Similarity=0.142 Sum_probs=48.4
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+|+.+++.. |.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+ |..++.+++|++|+|++|...+..
T Consensus 43 n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 43 NVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp CCCSEECTTT-STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred CccCcCChhH-hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 3444453332 55555666666666655553 45555566666666666655543 445555666666666654433322
Q ss_pred CCC---CCCCCEEecccCc
Q 037889 81 PEL---SLSLKWLDASNCK 96 (339)
Q Consensus 81 P~~---~~~L~~L~~~~~~ 96 (339)
|.. ..+|+.|+++++.
T Consensus 122 ~~~~~~l~~L~~L~L~~n~ 140 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNH 140 (606)
T ss_dssp GSCCTTCTTCCEEECCSSC
T ss_pred cchhccCCcccEEECCCCc
Confidence 222 2445555555543
No 88
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.83 E-value=1.5e-08 Score=93.22 Aligned_cols=89 Identities=22% Similarity=0.356 Sum_probs=70.8
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
+.++.+|..+ .++|++|+|++|.++++ |..+.++++|++|+|++|.++.+ |..++.+++|++|+|++|.. ..+
T Consensus 43 ~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l 117 (332)
T 2ft3_A 43 LGLKAVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEI 117 (332)
T ss_dssp SCCSSCCSCC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSC
T ss_pred CCccccCCCC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-Ccc
Confidence 4577888773 36888999999999886 45789999999999999999876 67888999999999998654 466
Q ss_pred CCC-CCCCCEEecccCc
Q 037889 81 PEL-SLSLKWLDASNCK 96 (339)
Q Consensus 81 P~~-~~~L~~L~~~~~~ 96 (339)
|.. +.+|+.|++.++.
T Consensus 118 ~~~~~~~L~~L~l~~n~ 134 (332)
T 2ft3_A 118 PPNLPSSLVELRIHDNR 134 (332)
T ss_dssp CSSCCTTCCEEECCSSC
T ss_pred CccccccCCEEECCCCc
Confidence 653 4788888888765
No 89
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.83 E-value=1.3e-08 Score=100.60 Aligned_cols=82 Identities=27% Similarity=0.176 Sum_probs=38.5
Q ss_pred CCCCCCccEEEeecCCCCccC---ccccCCCCCcEEEeecCCCcc-Cchh-hhcCccCcEEEcccCCCCccCCCCC-CCC
Q 037889 14 SSGLSSLDRLDLRGCGLTAIP---QEIGCLSSLKELDICENNFES-LPAS-IMQLSRLTYLYLSKCNMLLSLPELS-LSL 87 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP---~~i~~l~~L~~L~Ls~n~l~~-lP~~-i~~l~~L~~L~L~~c~~l~~lP~~~-~~L 87 (339)
+.++++|++|+|++|.++.+| ..++.+++|+.|+|++|.++. +|.. +..+++|+.|+|++|+..+.+|..+ .+|
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L 452 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV 452 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTC
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcC
Confidence 444444445555444444332 234444445555555554443 4432 3444455555555544444444433 355
Q ss_pred CEEecccC
Q 037889 88 KWLDASNC 95 (339)
Q Consensus 88 ~~L~~~~~ 95 (339)
+.|++++|
T Consensus 453 ~~L~L~~N 460 (562)
T 3a79_B 453 KVLDLHNN 460 (562)
T ss_dssp SEEECCSS
T ss_pred CEEECCCC
Confidence 55555554
No 90
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.83 E-value=2.2e-09 Score=110.20 Aligned_cols=83 Identities=30% Similarity=0.431 Sum_probs=43.0
Q ss_pred CCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCCC---CCCC
Q 037889 14 SSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS---LSLK 88 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~ 88 (339)
+.++++|++|+|++|.+++ +|..++.+++|+.|+|++|.++ .+|..++.+++|++|+|++|+..+.+|..+ .+|+
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 4455555555555555543 4555555555555555555555 445555555555555555555554555432 3455
Q ss_pred EEecccCc
Q 037889 89 WLDASNCK 96 (339)
Q Consensus 89 ~L~~~~~~ 96 (339)
.|++++|.
T Consensus 494 ~L~L~~N~ 501 (768)
T 3rgz_A 494 WISLSNNR 501 (768)
T ss_dssp EEECCSSC
T ss_pred EEEccCCc
Confidence 55555544
No 91
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.82 E-value=6.8e-09 Score=94.33 Aligned_cols=117 Identities=26% Similarity=0.278 Sum_probs=84.1
Q ss_pred CCCcccCC-cCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCcc--CchhhhcCccCcEEEcccCCCCc
Q 037889 3 RSLVTIPA-SILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFES--LPASIMQLSRLTYLYLSKCNMLL 78 (339)
Q Consensus 3 n~L~~lP~-~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~~--lP~~i~~l~~L~~L~L~~c~~l~ 78 (339)
|+++.+|. .. +..+++|++|++++|.+.. .|..+..+++|+.|+|++|.++. +|..+..+++|++|+|++|+..+
T Consensus 111 n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 111 SNLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp SEEESSTTTTT-TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred Ccccccccchh-hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC
Confidence 45566665 22 7888999999999999887 56678889999999999999875 78888899999999999877766
Q ss_pred cCCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 79 SLPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 79 ~lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
..|..+ ++|+.|+++++.. ..++. ..+..++.+...+++.+.
T Consensus 190 ~~~~~~~~l~~L~~L~L~~N~l-~~~~~--~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 190 LSPTAFNSLSSLQVLNMSHNNF-FSLDT--FPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp ECTTTTTTCTTCCEEECTTSCC-SBCCS--GGGTTCTTCCEEECTTSC
T ss_pred cCHHHhcCCCCCCEEECCCCcc-CccCh--hhccCcccCCEeECCCCC
Confidence 656544 5788888887653 22221 234444555555555443
No 92
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.82 E-value=3.9e-09 Score=105.19 Aligned_cols=91 Identities=22% Similarity=0.351 Sum_probs=58.8
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccCC
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
.++.+|+.+ +.++++|++|+|++|.|+.+| ..++.+++|+.|+|++|.++.+|+ .|+.+++|++|+|++|... .+|
T Consensus 62 ~l~~lp~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~ 139 (597)
T 3oja_B 62 TMRKLPAAL-LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 139 (597)
T ss_dssp EESEECTHH-HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred CCCCcCHHH-HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCC
Confidence 355566654 566777777777777777754 367777777777777777776653 4567777777777775444 444
Q ss_pred C-C---CCCCCEEecccCc
Q 037889 82 E-L---SLSLKWLDASNCK 96 (339)
Q Consensus 82 ~-~---~~~L~~L~~~~~~ 96 (339)
. . +.+|+.|++++|.
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHhccCCCCCEEEeeCCc
Confidence 3 2 3566777776654
No 93
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.82 E-value=1.8e-08 Score=97.15 Aligned_cols=91 Identities=31% Similarity=0.444 Sum_probs=65.1
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
|+++.+| . ++++++|++|++++|.++++|..+ .+|++|++++|.++.+| .++.+++|++|++++|.. ..+|.
T Consensus 141 n~l~~lp-~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~ 212 (454)
T 1jl5_A 141 NQLEKLP-E--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL-KKLPD 212 (454)
T ss_dssp SCCSSCC-C--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-SSCCC
T ss_pred CCCCCCc-c--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC-CcCCC
Confidence 4566666 3 667777777777777777776644 46777777777777777 578888888888888654 45777
Q ss_pred CCCCCCEEecccCcCCCcCC
Q 037889 83 LSLSLKWLDASNCKRLQSLP 102 (339)
Q Consensus 83 ~~~~L~~L~~~~~~~l~~l~ 102 (339)
.+.+|+.|++++|. ++.++
T Consensus 213 ~~~~L~~L~l~~n~-l~~lp 231 (454)
T 1jl5_A 213 LPLSLESIVAGNNI-LEELP 231 (454)
T ss_dssp CCTTCCEEECCSSC-CSSCC
T ss_pred CcCcccEEECcCCc-CCccc
Confidence 77788888888764 33444
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.81 E-value=1.3e-08 Score=90.83 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=84.9
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
+.++.+| . +..+++|++|+|++|.|+++|. +..+++|+.|+|++|+++.+|.... ++|++|+|++|.. ..+|.
T Consensus 51 n~i~~l~-~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l-~~~~~ 123 (263)
T 1xeu_A 51 SNIQSLA-G--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNEL-RDTDS 123 (263)
T ss_dssp SCCCCCT-T--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCC-SBSGG
T ss_pred CCcccch-H--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCcc-CCChh
Confidence 5678888 4 7889999999999999999888 9999999999999999999985433 8999999999654 44664
Q ss_pred --CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 83 --LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 83 --~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
.+.+|+.|+++++. ++.++ .+..++.+....++.+.
T Consensus 124 l~~l~~L~~L~Ls~N~-i~~~~----~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNK-LKSIV----MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp GTTCTTCCEEECTTSC-CCBCG----GGGGCTTCCEEECTTSC
T ss_pred hcCcccccEEECCCCc-CCCCh----HHccCCCCCEEECCCCc
Confidence 24789999998865 33332 45556666666665554
No 95
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.81 E-value=1.6e-09 Score=99.02 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=53.6
Q ss_pred CCCCccEEEeecCCCCc-cCccc--cCCCCCcEEEeecCCCccCchhhhcC-----ccCcEEEcccCCCCccCCCCC---
Q 037889 16 GLSSLDRLDLRGCGLTA-IPQEI--GCLSSLKELDICENNFESLPASIMQL-----SRLTYLYLSKCNMLLSLPELS--- 84 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~-lP~~i--~~l~~L~~L~Ls~n~l~~lP~~i~~l-----~~L~~L~L~~c~~l~~lP~~~--- 84 (339)
++++|++|+|++|.+++ +|..+ ..+++|++|+|++|+++.+|..++.+ ++|++|+|++|+..+..|..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 46677777777777764 66665 67777777777777777666666665 677777777765554444433
Q ss_pred CCCCEEecccCc
Q 037889 85 LSLKWLDASNCK 96 (339)
Q Consensus 85 ~~L~~L~~~~~~ 96 (339)
.+|+.|+++++.
T Consensus 173 ~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 173 PALSTLDLSDNP 184 (312)
T ss_dssp SSCCEEECCSCT
T ss_pred CCCCEEECCCCC
Confidence 566667776655
No 96
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.81 E-value=1.8e-08 Score=100.47 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=77.8
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l 80 (339)
+.|+.+|+.. |..+++|++|+|++|.|+.+|. .++++++|++|+|++|.++.+|.. ++.+++|++|+|++|...+..
T Consensus 85 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 85 LQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCCCChHH-hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence 5677887754 8999999999999999999654 579999999999999999999876 589999999999998777766
Q ss_pred CCCC---CCCCEEecccCc
Q 037889 81 PELS---LSLKWLDASNCK 96 (339)
Q Consensus 81 P~~~---~~L~~L~~~~~~ 96 (339)
|..+ .+|+.|+++++.
T Consensus 164 ~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 164 DDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp TTTTTTCTTCCEEECTTSC
T ss_pred hhhhhcCCcCcEEECcCCC
Confidence 6544 678888888764
No 97
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.78 E-value=3.5e-08 Score=91.06 Aligned_cols=94 Identities=23% Similarity=0.342 Sum_probs=69.8
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
+.++.+|. +..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+..+++|++|++++|... .+|.
T Consensus 54 ~~i~~~~~---~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~-~~~~ 127 (347)
T 4fmz_A 54 EKVASIQG---IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS-DISP 127 (347)
T ss_dssp SCCCCCTT---GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC-CCGG
T ss_pred Cccccchh---hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc-Cchh
Confidence 34556654 5678888888888888888777 888888888888888888876 5888888888888886543 4443
Q ss_pred --CCCCCCEEecccCcCCCcCC
Q 037889 83 --LSLSLKWLDASNCKRLQSLP 102 (339)
Q Consensus 83 --~~~~L~~L~~~~~~~l~~l~ 102 (339)
...+|+.|++.+|..+..++
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~ 149 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLS 149 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCG
T ss_pred hccCCceeEEECCCCCCccccc
Confidence 23678888888876555443
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.78 E-value=1.3e-08 Score=92.82 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=58.1
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCc---cC--ccccCCCCCcEEEeecCCCccCchh----hhcCccCcEEEccc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTA---IP--QEIGCLSSLKELDICENNFESLPAS----IMQLSRLTYLYLSK 73 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~---lP--~~i~~l~~L~~L~Ls~n~l~~lP~~----i~~l~~L~~L~L~~ 73 (339)
|++..+|... +..+++|++|+|++|++.+ +| ..++.+++|++|+|++|+++.+|.. ++.+++|++|+|++
T Consensus 155 n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 155 AHSPAFSCEQ-VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp CSSCCCCTTS-CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred CCcchhhHHH-hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence 4455555443 6667777777777777654 32 2235667777777777777665542 45667777777777
Q ss_pred CCCCccCCCCC------CCCCEEecccCc
Q 037889 74 CNMLLSLPELS------LSLKWLDASNCK 96 (339)
Q Consensus 74 c~~l~~lP~~~------~~L~~L~~~~~~ 96 (339)
|...+..|..+ ++|+.|++++|.
T Consensus 234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 234 NSLRATVNPSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp SCCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred CCCCccchhhHHhccCcCcCCEEECCCCC
Confidence 66665555432 467777777654
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.77 E-value=1.9e-08 Score=93.42 Aligned_cols=99 Identities=30% Similarity=0.286 Sum_probs=62.6
Q ss_pred CCCCcccCCcCcCCCCC-CccEEEeecCCCCccCccccCCCCCcEEEeec-CCCccCch-hhhcCccCcEEEcccCCCCc
Q 037889 2 CRSLVTIPASILSSGLS-SLDRLDLRGCGLTAIPQEIGCLSSLKELDICE-NNFESLPA-SIMQLSRLTYLYLSKCNMLL 78 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~-~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~-n~l~~lP~-~i~~l~~L~~L~L~~c~~l~ 78 (339)
+++++.+|... |..+. .++.|+|++|+|+++|..+....+|+.|++++ |.++.+|. .|..+++|+.|+|++| .+.
T Consensus 138 ~~~i~~l~~~~-f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~ 215 (350)
T 4ay9_X 138 NINIHTIERNS-FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIH 215 (350)
T ss_dssp CTTCCEECTTS-STTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCC
T ss_pred ccccccccccc-hhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcC
Confidence 45566666654 44443 46667777777777766666666677777753 55667764 3566777777777764 344
Q ss_pred cCCC-CCCCCCEEecccCcCCCcCC
Q 037889 79 SLPE-LSLSLKWLDASNCKRLQSLP 102 (339)
Q Consensus 79 ~lP~-~~~~L~~L~~~~~~~l~~l~ 102 (339)
.+|. .+.+|+.|.+.++..++.+|
T Consensus 216 ~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 216 SLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp CCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred ccChhhhccchHhhhccCCCcCcCC
Confidence 5554 45667777776666666655
No 100
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.77 E-value=3.3e-08 Score=98.96 Aligned_cols=83 Identities=25% Similarity=0.302 Sum_probs=56.1
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP 81 (339)
.+.|+.+|..+ . ++|++|+|++|.|+.+|. .+++|+.|+|++|+|+.+|. .+++|++|+|++| .+..+|
T Consensus 49 ~n~L~~lp~~l--~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~ 117 (622)
T 3g06_A 49 ESGLTTLPDCL--P--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTHLP 117 (622)
T ss_dssp SSCCSCCCSCC--C--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCCCC
T ss_pred CCCcCccChhh--C--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCCCC
Confidence 46778888873 2 678888888888887777 46777777887777777775 5566777777664 334455
Q ss_pred CCCCCCCEEecccC
Q 037889 82 ELSLSLKWLDASNC 95 (339)
Q Consensus 82 ~~~~~L~~L~~~~~ 95 (339)
..+.+|+.|++++|
T Consensus 118 ~~l~~L~~L~L~~N 131 (622)
T 3g06_A 118 ALPSGLCKLWIFGN 131 (622)
T ss_dssp CCCTTCCEEECCSS
T ss_pred CCCCCcCEEECCCC
Confidence 55555555555544
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.77 E-value=2.7e-08 Score=90.12 Aligned_cols=110 Identities=20% Similarity=0.253 Sum_probs=84.6
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
|+++.+++ +.++++|++|+|++|.++.+|. +..+++|+.|+|++|.++.+| .+..+++|+.|++++|+.. .++.
T Consensus 78 n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~~ 151 (291)
T 1h6t_A 78 NKLTDIKP---LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-DITV 151 (291)
T ss_dssp SCCCCCGG---GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCC-CCGG
T ss_pred CccCCCcc---cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCC-cchh
Confidence 56666665 5789999999999999999876 999999999999999999986 6899999999999997554 4453
Q ss_pred --CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 83 --LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 83 --~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
.+.+|+.|++++|. ++.++. +..++.+....++.+.
T Consensus 152 l~~l~~L~~L~L~~N~-l~~~~~----l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQ-ISDIVP----LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp GGGCTTCSEEECCSSC-CCCCGG----GTTCTTCCEEECCSSC
T ss_pred hccCCCCCEEEccCCc-cccchh----hcCCCccCEEECCCCc
Confidence 24789999999874 333322 5555555555555554
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.77 E-value=2.4e-08 Score=99.75 Aligned_cols=109 Identities=23% Similarity=0.237 Sum_probs=75.5
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
+.|..+|. +..+++|+.|+|++|.|..+|. +..+++|+.|+|++|.++.+| .+..+++|+.|+|++|... .+|.
T Consensus 53 n~i~~l~~---l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l~~ 126 (605)
T 1m9s_A 53 SDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS-DING 126 (605)
T ss_dssp CCCCCCTT---GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC-CCGG
T ss_pred CCCCCChH---HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC-CCcc
Confidence 45666663 6778888899998888888776 888888888888888888877 6888888888888886544 4554
Q ss_pred C--CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCC
Q 037889 83 L--SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKH 122 (339)
Q Consensus 83 ~--~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~ 122 (339)
. +.+|+.|++++|.. ..+ ..+..++.|....++.+
T Consensus 127 l~~l~~L~~L~Ls~N~l-~~l----~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKI-TDI----TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp GGGCTTCSEEECCSSCC-CCC----GGGGSCTTCSEEECCSS
T ss_pred ccCCCccCEEECCCCcc-CCc----hhhcccCCCCEEECcCC
Confidence 2 36788888877642 222 23444444444444443
No 103
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.76 E-value=3.2e-08 Score=95.52 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=57.9
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
+.++.+| . +..+++|++|+|++|.|+++| ++.+++|++|+|++|.++.+| ++.+++|++|++++|+..+ +|-
T Consensus 52 n~l~~~~-~--l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~~ 123 (457)
T 3bz5_A 52 SSITDMT-G--IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-LDV 123 (457)
T ss_dssp SCCCCCT-T--GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC-CCC
T ss_pred CCcccCh-h--hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe-ecC
Confidence 4566666 3 667778888888888877775 777777777777777777765 6777777777777754433 441
Q ss_pred -CCCCCCEEecccC
Q 037889 83 -LSLSLKWLDASNC 95 (339)
Q Consensus 83 -~~~~L~~L~~~~~ 95 (339)
.+.+|+.|+++++
T Consensus 124 ~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 124 SQNPLLTYLNCARN 137 (457)
T ss_dssp TTCTTCCEEECTTS
T ss_pred CCCCcCCEEECCCC
Confidence 2355666666654
No 104
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.76 E-value=1.9e-08 Score=98.94 Aligned_cols=92 Identities=27% Similarity=0.281 Sum_probs=53.7
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+++.+++.. |.++++|++|+|++|.++++ |..++++++|++|+|++|.++.+| ..|+.+++|++|++++|+ +..+
T Consensus 38 n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l 115 (570)
T 2z63_A 38 NPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASL 115 (570)
T ss_dssp CCCCEECTTT-TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCS
T ss_pred CccCccChhH-hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccC
Confidence 4455554433 56666666666666666664 344666666666666666666554 456666666666666643 3333
Q ss_pred CC----CCCCCCEEecccCc
Q 037889 81 PE----LSLSLKWLDASNCK 96 (339)
Q Consensus 81 P~----~~~~L~~L~~~~~~ 96 (339)
|. ...+|+.|+++++.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~ 135 (570)
T 2z63_A 116 ENFPIGHLKTLKELNVAHNL 135 (570)
T ss_dssp TTCSCTTCTTCCEEECCSSC
T ss_pred CCccccccccccEEecCCCc
Confidence 32 12456666666543
No 105
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.76 E-value=2.7e-08 Score=95.30 Aligned_cols=95 Identities=22% Similarity=0.181 Sum_probs=78.6
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
|+++.+++.. |.++++|++|+|++|.++++ |..++.+++|+.|+|++|+++.+ |..+..+++|++|+|++|+..+..
T Consensus 309 n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 309 NEINKIDDNA-FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhH-hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 5677776544 89999999999999999996 67799999999999999999977 678999999999999997655533
Q ss_pred CCC---CCCCCEEecccCcCC
Q 037889 81 PEL---SLSLKWLDASNCKRL 98 (339)
Q Consensus 81 P~~---~~~L~~L~~~~~~~l 98 (339)
+.. +.+|+.|+++++...
T Consensus 388 ~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCBC
T ss_pred HhHhccCCcccEEEccCCCcc
Confidence 333 367889999887643
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.74 E-value=5.7e-08 Score=89.63 Aligned_cols=89 Identities=25% Similarity=0.370 Sum_probs=76.4
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
++++.+|. +..+++|++|+|++|.++.+| .+..+++|++|++++|.++.+|. +..+++|+.|++++|.....++.
T Consensus 76 n~i~~~~~---~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~ 150 (347)
T 4fmz_A 76 NQITDISP---LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP 150 (347)
T ss_dssp SCCCCCGG---GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG
T ss_pred Cccccchh---hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc
Confidence 45666665 578999999999999999986 59999999999999999999986 89999999999999988887775
Q ss_pred C--CCCCCEEecccCc
Q 037889 83 L--SLSLKWLDASNCK 96 (339)
Q Consensus 83 ~--~~~L~~L~~~~~~ 96 (339)
. +.+|+.|++.+|.
T Consensus 151 ~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESK 166 (347)
T ss_dssp GTTCTTCCEEECCSSC
T ss_pred hhhCCCCcEEEecCCC
Confidence 3 4688899888865
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.73 E-value=3.4e-08 Score=98.58 Aligned_cols=109 Identities=20% Similarity=0.224 Sum_probs=72.8
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
|+|..+|+ +..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.++.+| .+..+++|+.|+|++|.... ++.
T Consensus 75 N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l~~ 148 (605)
T 1m9s_A 75 NKLTDIKP---LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-ITV 148 (605)
T ss_dssp SCCCCCGG---GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-CGG
T ss_pred CCCCCChh---hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC-chh
Confidence 45556654 467888888888888888876 5788888888888888888775 57788888888888765443 443
Q ss_pred --CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCC
Q 037889 83 --LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKH 122 (339)
Q Consensus 83 --~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~ 122 (339)
.+.+|+.|++++|... .++. +..++.|....++.+
T Consensus 149 l~~l~~L~~L~Ls~N~l~-~~~~----l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQIS-DIVP----LAGLTKLQNLYLSKN 185 (605)
T ss_dssp GGSCTTCSEEECCSSCCC-CCGG----GTTCTTCCEEECCSS
T ss_pred hcccCCCCEEECcCCcCC-Cchh----hccCCCCCEEECcCC
Confidence 2367788888776432 2211 444444444444444
No 108
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.72 E-value=1.3e-08 Score=100.09 Aligned_cols=93 Identities=31% Similarity=0.334 Sum_probs=79.6
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCc-c
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLL-S 79 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~-~ 79 (339)
++++.+|+.. |.++++|++|+|++|.++.+| ..|+++++|++|++++|+++.+|. .++.+++|++|++++|.... .
T Consensus 62 n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (570)
T 2z63_A 62 CEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140 (570)
T ss_dssp CCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC
T ss_pred CcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec
Confidence 4678887765 899999999999999999965 679999999999999999999885 69999999999999987665 4
Q ss_pred CCCCC---CCCCEEecccCc
Q 037889 80 LPELS---LSLKWLDASNCK 96 (339)
Q Consensus 80 lP~~~---~~L~~L~~~~~~ 96 (339)
+|..+ .+|+.|+++++.
T Consensus 141 lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 141 LPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp CCGGGGGCTTCCEEECTTSC
T ss_pred ChhhhcccCCCCEEeCcCCc
Confidence 77754 678899988865
No 109
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.72 E-value=2.8e-08 Score=103.06 Aligned_cols=88 Identities=19% Similarity=0.263 Sum_probs=56.5
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCC-CccC-chhhhcCccCcEEEcccCCCCccC
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENN-FESL-PASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~-l~~l-P~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
+++.+|. . .++|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+ |..|+++++|++|+|++|+..+..
T Consensus 15 ~L~~vP~-l----p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 15 NLTQVPQ-V----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CSSCCCS-S----CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCC-C----CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 4666665 2 45677777777777763 5667777777777777774 3355 556777777777777776665555
Q ss_pred CCCC---CCCCEEecccCc
Q 037889 81 PELS---LSLKWLDASNCK 96 (339)
Q Consensus 81 P~~~---~~L~~L~~~~~~ 96 (339)
|..+ .+|+.|++++|.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp TTSSCSCSSCCCEECTTCC
T ss_pred HhHccCCcccCEeeCcCCC
Confidence 6544 456666666654
No 110
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.72 E-value=6e-08 Score=93.58 Aligned_cols=78 Identities=24% Similarity=0.234 Sum_probs=39.7
Q ss_pred CCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC-CCCCCCCEEecc
Q 037889 15 SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP-ELSLSLKWLDAS 93 (339)
Q Consensus 15 ~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP-~~~~~L~~L~~~ 93 (339)
+.+++|++|+|++|.|+++| ++.+++|++|++++|+++.+| ++.+++|++|++++|+..+ +| ....+|+.|++.
T Consensus 82 ~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 82 SQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCH 156 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECT
T ss_pred ccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECC
Confidence 44555555555555555553 555555555555555555554 5555555555555543333 22 122445555555
Q ss_pred cCcC
Q 037889 94 NCKR 97 (339)
Q Consensus 94 ~~~~ 97 (339)
+|..
T Consensus 157 ~n~~ 160 (457)
T 3bz5_A 157 LNKK 160 (457)
T ss_dssp TCSC
T ss_pred CCCc
Confidence 5443
No 111
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.72 E-value=9.4e-09 Score=100.05 Aligned_cols=55 Identities=25% Similarity=0.353 Sum_probs=32.3
Q ss_pred CccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccC
Q 037889 19 SLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74 (339)
Q Consensus 19 ~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c 74 (339)
+|++|+|++|.|+.+ |..++.+++|++|+|++|.++.+++ ++.+++|++|+|++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC
Confidence 566666666666654 3456666666666666666654443 555666666666654
No 112
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.70 E-value=3.5e-08 Score=99.46 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=83.8
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
++|+.+|.. +. ++|++|+|++|.++++|. .++++++|++|+|++|.++.+ |..++++++|++|+|++|+. ..+
T Consensus 14 ~~L~~ip~~--~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l 88 (680)
T 1ziw_A 14 LKLTQVPDD--LP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQL 88 (680)
T ss_dssp SCCSSCCSC--SC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCC
T ss_pred CCccccccc--cC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-Ccc
Confidence 468899988 43 789999999999999765 599999999999999999977 67799999999999999754 456
Q ss_pred CC-C---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCC
Q 037889 81 PE-L---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121 (339)
Q Consensus 81 P~-~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~ 121 (339)
|. . ..+|+.|+++++.. ..++ +..+..+..+....++.
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l-~~~~--~~~~~~l~~L~~L~Ls~ 130 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSI-QKIK--NNPFVKQKNLITLDLSH 130 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCC-CCCC--SCTTTTCTTCCEEECCS
T ss_pred ChhhhccCCCCCEEECCCCcc-CccC--hhHccccCCCCEEECCC
Confidence 64 3 36899999998753 3222 22344444444444433
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.69 E-value=4.7e-08 Score=90.80 Aligned_cols=99 Identities=26% Similarity=0.272 Sum_probs=66.1
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccC-------------------------C-CCCcEEEeecCCCc
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGC-------------------------L-SSLKELDICENNFE 54 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~-------------------------l-~~L~~L~Ls~n~l~ 54 (339)
+|+|+.+|+.+ |.++++|++|++++|.|+.+|.. +.. + ..|+.|+|++|+|+
T Consensus 89 ~N~l~~l~~~~-f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEA-FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTS-BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchh-hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 57788887765 88888888888888887765542 111 1 23566777777777
Q ss_pred cCchhhhcCccCcEEEcccCCCCccCCCC----CCCCCEEecccCcCCCcCC
Q 037889 55 SLPASIMQLSRLTYLYLSKCNMLLSLPEL----SLSLKWLDASNCKRLQSLP 102 (339)
Q Consensus 55 ~lP~~i~~l~~L~~L~L~~c~~l~~lP~~----~~~L~~L~~~~~~~l~~l~ 102 (339)
.+|..+....+|+.|++++|+.++.+|.. +.+|+.|+++++ .++.+|
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp 218 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP 218 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC
Confidence 77766666667777777776777777752 256777777765 344444
No 114
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.69 E-value=7e-08 Score=96.59 Aligned_cols=96 Identities=36% Similarity=0.497 Sum_probs=76.8
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
|+|+.+|.. +++|++|+|++|.|+.+|. .+++|++|+|++|+++.+|. .+++|+.|++++|+ +..+|.
T Consensus 71 N~l~~lp~~-----l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~ 138 (622)
T 3g06_A 71 NNLTSLPAL-----PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV 138 (622)
T ss_dssp CCCSCCCCC-----CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCC
T ss_pred CCCCCCCCc-----CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCC
Confidence 567788874 6889999999999999988 67899999999999999987 67889999999854 666888
Q ss_pred CCCCCCEEecccCcCCCcCCCCCCCcccc
Q 037889 83 LSLSLKWLDASNCKRLQSLPEIPSSLEEV 111 (339)
Q Consensus 83 ~~~~L~~L~~~~~~~l~~l~~~~~~l~~l 111 (339)
.+.+|+.|++++| .+..++..+..+..|
T Consensus 139 ~l~~L~~L~Ls~N-~l~~l~~~~~~L~~L 166 (622)
T 3g06_A 139 LPPGLQELSVSDN-QLASLPALPSELCKL 166 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCCCCTTCCEE
T ss_pred CCCCCCEEECcCC-cCCCcCCccCCCCEE
Confidence 8899999999887 445555555444444
No 115
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.68 E-value=2.7e-08 Score=103.08 Aligned_cols=94 Identities=24% Similarity=0.198 Sum_probs=72.6
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCC-Ccc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCcc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGL-TAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l-~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~ 79 (339)
|.|+.+++.. |.++++|++|+|++|.+ ..+ |..|+++++|++|+|++|.++.+ |..|+.+++|++|+|++|...+.
T Consensus 34 N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 112 (844)
T 3j0a_A 34 NYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112 (844)
T ss_dssp CCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred CcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence 5677775544 88888999999988854 446 67788889999999999988866 77888888999999988877766
Q ss_pred CCCC-----CCCCCEEecccCcC
Q 037889 80 LPEL-----SLSLKWLDASNCKR 97 (339)
Q Consensus 80 lP~~-----~~~L~~L~~~~~~~ 97 (339)
+|.. +.+|+.|++++|..
T Consensus 113 ~~~~~~~~~L~~L~~L~Ls~N~l 135 (844)
T 3j0a_A 113 VLKDGYFRNLKALTRLDLSKNQI 135 (844)
T ss_dssp CSTTCCCSSCSSCCEEEEESCCC
T ss_pred cccCccccccCCCCEEECCCCcc
Confidence 6542 36788888887653
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.68 E-value=2.1e-10 Score=97.91 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=67.3
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL 83 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~ 83 (339)
.++.+|.. +..+++|++|+|++|.++.+| .+..+++|+.|+|++|.++.+|..+..+++|++|+|++|.. ..+|..
T Consensus 36 ~l~~l~~~--~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l-~~l~~~ 111 (198)
T 1ds9_A 36 PIEKMDAT--LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI-ASLSGI 111 (198)
T ss_dssp TCCCCHHH--HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEEC-CCHHHH
T ss_pred cHhhhhHH--HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcC-CcCCcc
Confidence 34555555 677888888888888888888 78888888888888888888888777888888888888644 446632
Q ss_pred --CCCCCEEecccCc
Q 037889 84 --SLSLKWLDASNCK 96 (339)
Q Consensus 84 --~~~L~~L~~~~~~ 96 (339)
+.+|+.|+++++.
T Consensus 112 ~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK 126 (198)
T ss_dssp HHHHHSSEEEESEEE
T ss_pred ccCCCCCEEECCCCc
Confidence 2567788777753
No 117
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=2.8e-08 Score=91.95 Aligned_cols=75 Identities=25% Similarity=0.263 Sum_probs=64.9
Q ss_pred CCCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCC
Q 037889 2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNML 77 (339)
Q Consensus 2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l 77 (339)
+|+|+.+|+.. |.+|++|+.|+|++|+|+++ |..|.+|++|+.|+|++|+|+.+|..+.....|+.|+|.+|+..
T Consensus 41 ~n~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 41 QQHLQHLELRD-LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSSCCEECGGG-SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCCCCCcChhH-hccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 58999999765 89999999999999999996 45789999999999999999999976554444999999986543
No 118
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.67 E-value=1.9e-08 Score=97.83 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=80.7
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCcc-Cchhhh-cCccCcEEEcccCCCCcc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFES-LPASIM-QLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~-lP~~i~-~l~~L~~L~L~~c~~l~~ 79 (339)
|.|+.+|.. .+++|+.|+|++|.|+.+ |..++.+++|+.|+|++|.++. .|..+. .+++|++|+|++|...+.
T Consensus 109 N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 109 NNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 455556554 467899999999999985 6678889999999999999986 466665 789999999998765544
Q ss_pred CCCC--CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 80 LPEL--SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 80 lP~~--~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
|.. +++|+.|++++|. +..+ +..+..++.+...+++.+.
T Consensus 185 -~~~~~l~~L~~L~Ls~N~-l~~~---~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 185 -KGQVVFAKLKTLDLSSNK-LAFM---GPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp -ECCCCCTTCCEEECCSSC-CCEE---CGGGGGGTTCSEEECTTSC
T ss_pred -cccccCCCCCEEECCCCC-CCCC---CHhHcCCCCccEEEecCCc
Confidence 433 4788999988865 2333 3345556666666665554
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.66 E-value=9.6e-08 Score=92.07 Aligned_cols=86 Identities=27% Similarity=0.342 Sum_probs=54.2
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
|+++.+| . ++++++|++|++++|.++++|... ++|+.|++++|.++.+| .++.+++|++|++++|+ +..+|.
T Consensus 183 n~l~~l~-~--~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~ 254 (454)
T 1jl5_A 183 NQLEELP-E--LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPD 254 (454)
T ss_dssp SCCSSCC-C--CTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCS
T ss_pred CcCCcCc-c--ccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCcccc
Confidence 3445555 3 456666666666666666555433 35666666666666666 37777777777777744 445676
Q ss_pred CCCCCCEEecccCc
Q 037889 83 LSLSLKWLDASNCK 96 (339)
Q Consensus 83 ~~~~L~~L~~~~~~ 96 (339)
.+.+|+.|++++|.
T Consensus 255 ~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 255 LPPSLEALNVRDNY 268 (454)
T ss_dssp CCTTCCEEECCSSC
T ss_pred cccccCEEECCCCc
Confidence 66777777777654
No 120
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.66 E-value=1.9e-08 Score=91.83 Aligned_cols=90 Identities=22% Similarity=0.184 Sum_probs=58.7
Q ss_pred ccCCcCcCCCCCCccEEEeecCCCCccCccccCC-----CCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccC
Q 037889 7 TIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCL-----SSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 7 ~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l-----~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
.+|..+++..+++|++|+|++|.++++|..++.+ ++|++|+|++|+++.+| ..++.+++|++|+|++|+..+.+
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence 4566531267777777777777777776666665 77777777777777665 56777777777777776654431
Q ss_pred --C-----CCCCCCCEEecccCc
Q 037889 81 --P-----ELSLSLKWLDASNCK 96 (339)
Q Consensus 81 --P-----~~~~~L~~L~~~~~~ 96 (339)
| ..+.+|+.|++++|.
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSC
T ss_pred HHHHHHHhccCCCCCEEECCCCc
Confidence 1 334567777776653
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.65 E-value=7.3e-08 Score=95.46 Aligned_cols=88 Identities=33% Similarity=0.451 Sum_probs=68.4
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
|+|+.+|. + . + +|++|+|++|.|+++|. .+++|+.|+|++|.|+.+|. .+++|+.|+|++|+. ..+|.
T Consensus 110 N~l~~ip~-l-~-~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L-~~lp~ 177 (571)
T 3cvr_A 110 NRLSTLPE-L-P-A--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQL-TFLPE 177 (571)
T ss_dssp SCCSCCCC-C-C-T--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCCC
T ss_pred CCCCCcch-h-h-c--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCC-CCcch
Confidence 56666776 3 2 2 88888888888888887 67889999999999998886 678999999998654 44887
Q ss_pred CCCCCCEEecccCcCCCcCCC
Q 037889 83 LSLSLKWLDASNCKRLQSLPE 103 (339)
Q Consensus 83 ~~~~L~~L~~~~~~~l~~l~~ 103 (339)
...+|+.|++++|. ++.+|.
T Consensus 178 l~~~L~~L~Ls~N~-L~~lp~ 197 (571)
T 3cvr_A 178 LPESLEALDVSTNL-LESLPA 197 (571)
T ss_dssp CCTTCCEEECCSSC-CSSCCC
T ss_pred hhCCCCEEECcCCC-CCchhh
Confidence 55789999998864 455554
No 122
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.65 E-value=2.7e-08 Score=91.08 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=76.3
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCc-hhh-hcCccCcEEEcccCCCCcc
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLP-ASI-MQLSRLTYLYLSKCNMLLS 79 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP-~~i-~~l~~L~~L~L~~c~~l~~ 79 (339)
|+++.++.. .+++|++|+|++|.++.+ |..++.+++|+.|+|++|.++.++ ..+ ..+++|++|+|++|.. ..
T Consensus 109 n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~ 183 (317)
T 3o53_A 109 NNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YD 183 (317)
T ss_dssp SCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CE
T ss_pred CccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-cc
Confidence 455566554 367888999999998886 447888888999999999888664 445 4688899999988654 44
Q ss_pred CCCC--CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 80 LPEL--SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 80 lP~~--~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
+|.. +.+|+.|++++|. ++.+ +..+..++.+....++.+.
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~-l~~l---~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 184 VKGQVVFAKLKTLDLSSNK-LAFM---GPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp EECCCCCTTCCEEECCSSC-CCEE---CGGGGGGTTCSEEECTTSC
T ss_pred cccccccccCCEEECCCCc-CCcc---hhhhcccCcccEEECcCCc
Confidence 4543 4788888888764 2223 2335555555555555543
No 123
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.64 E-value=1.3e-08 Score=93.19 Aligned_cols=79 Identities=24% Similarity=0.250 Sum_probs=49.0
Q ss_pred CCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCCCCCCCEEec
Q 037889 14 SSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDA 92 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~~~L~~L~~ 92 (339)
+..+++|++|+|++|.++.++ ..+..+++|+.|+|++|.++.+++ +..+++|++|+|++|+ +..+|.. ++|+.|++
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~~-~~L~~L~l 106 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLVG-PSIETLHA 106 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEEC-TTCCEEEC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccCC-CCcCEEEC
Confidence 344556777777777777754 457777777777777777765554 6677777777777654 3333322 45555555
Q ss_pred ccC
Q 037889 93 SNC 95 (339)
Q Consensus 93 ~~~ 95 (339)
+++
T Consensus 107 ~~n 109 (317)
T 3o53_A 107 ANN 109 (317)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.63 E-value=1.3e-07 Score=93.57 Aligned_cols=83 Identities=27% Similarity=0.511 Sum_probs=61.2
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
++|+.+|..+ +++|++|+|++|.|+.+| ..+++|+.|+|++|+|+.+|. +.. +|++|+|++|+..+ +|.
T Consensus 69 n~L~~lp~~l----~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~-lp~ 137 (571)
T 3cvr_A 69 LNLSSLPDNL----PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM-LPE 137 (571)
T ss_dssp SCCSCCCSCC----CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC-CCC
T ss_pred CCCCccCHhH----cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC-CCC
Confidence 4677788873 367888888888888888 456788888888888888876 554 78888888755443 666
Q ss_pred CCCCCCEEecccCc
Q 037889 83 LSLSLKWLDASNCK 96 (339)
Q Consensus 83 ~~~~L~~L~~~~~~ 96 (339)
.+.+|+.|+++++.
T Consensus 138 ~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 138 LPALLEYINADNNQ 151 (571)
T ss_dssp CCTTCCEEECCSSC
T ss_pred cCccccEEeCCCCc
Confidence 66777777777754
No 125
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.62 E-value=1.5e-08 Score=92.40 Aligned_cols=104 Identities=22% Similarity=0.287 Sum_probs=79.5
Q ss_pred CCCCCCccEEEeecCCCCccCcc----ccCCCCCcEEEeecCCCccC-chhhhcC---ccCcEEEcccCCCCccCCCC-C
Q 037889 14 SSGLSSLDRLDLRGCGLTAIPQE----IGCLSSLKELDICENNFESL-PASIMQL---SRLTYLYLSKCNMLLSLPEL-S 84 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP~~----i~~l~~L~~L~Ls~n~l~~l-P~~i~~l---~~L~~L~L~~c~~l~~lP~~-~ 84 (339)
+..+++|++|+|++|.++.+|.. ++.+++|++|+|++|.++.+ |+.+..+ ++|++|+|++|+.. .+|.. +
T Consensus 193 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~ 271 (310)
T 4glp_A 193 PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP 271 (310)
T ss_dssp TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC
T ss_pred hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc
Confidence 57899999999999999877653 57889999999999999976 8888776 69999999997655 77764 4
Q ss_pred CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 85 LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 85 ~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
.+|+.|++++|. ++.++. + ..++.+....++.++
T Consensus 272 ~~L~~L~Ls~N~-l~~~~~-~---~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 272 AKLRVLDLSSNR-LNRAPQ-P---DELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCSCEECCSCC-CCSCCC-T---TSCCCCSCEECSSTT
T ss_pred CCCCEEECCCCc-CCCCch-h---hhCCCccEEECcCCC
Confidence 789999999875 333332 2 334444445555554
No 126
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.60 E-value=2e-07 Score=89.92 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=54.8
Q ss_pred CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC-CCCCCCCEEec
Q 037889 14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP-ELSLSLKWLDA 92 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP-~~~~~L~~L~~ 92 (339)
+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|+..+..| ..+++|+.|++
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 316 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 316 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEEC
T ss_pred hhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEEC
Confidence 5567777777777777777655 7777777777777777777765 6777777777777755443322 12356777777
Q ss_pred ccCc
Q 037889 93 SNCK 96 (339)
Q Consensus 93 ~~~~ 96 (339)
++|.
T Consensus 317 ~~n~ 320 (466)
T 1o6v_A 317 YFNN 320 (466)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 7664
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.56 E-value=2.1e-09 Score=91.65 Aligned_cols=89 Identities=27% Similarity=0.242 Sum_probs=75.4
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
|+++.+| . +..+++|++|+|++|.|+.+|..+..+++|+.|+|++|+++.+| .+..+++|++|+|++|+.. .+|.
T Consensus 58 n~l~~l~-~--~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~-~~~~ 132 (198)
T 1ds9_A 58 NNIEKIS-S--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT-NWGE 132 (198)
T ss_dssp EEESCCC-C--HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECC-CHHH
T ss_pred CCCcccc-c--cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCC-chhH
Confidence 4566777 5 78899999999999999999998888999999999999999998 6999999999999996544 3332
Q ss_pred -----CCCCCCEEecccCc
Q 037889 83 -----LSLSLKWLDASNCK 96 (339)
Q Consensus 83 -----~~~~L~~L~~~~~~ 96 (339)
.+.+|+.|++.+|.
T Consensus 133 ~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 133 IDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHTTTTTCSEEEECSCH
T ss_pred HHHHhcCCCCCEEEecCCc
Confidence 34678888888765
No 128
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.55 E-value=3.4e-07 Score=88.20 Aligned_cols=89 Identities=26% Similarity=0.355 Sum_probs=69.7
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC-
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP- 81 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP- 81 (339)
+.+..+++ ++.+++|+.|++++|.+++++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|...+..|
T Consensus 209 n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 283 (466)
T 1o6v_A 209 NQISDITP---LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPL 283 (466)
T ss_dssp SCCCCCGG---GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGG
T ss_pred Cccccccc---ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccccc
Confidence 34444443 456889999999999999875 58889999999999999998876 8899999999999876554333
Q ss_pred CCCCCCCEEecccCc
Q 037889 82 ELSLSLKWLDASNCK 96 (339)
Q Consensus 82 ~~~~~L~~L~~~~~~ 96 (339)
..+.+|+.|++++|.
T Consensus 284 ~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 284 AGLTALTNLELNENQ 298 (466)
T ss_dssp TTCTTCSEEECCSSC
T ss_pred cCCCccCeEEcCCCc
Confidence 134788999998865
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.39 E-value=5.5e-08 Score=89.23 Aligned_cols=112 Identities=25% Similarity=0.337 Sum_probs=83.4
Q ss_pred cCCcCcCCCCCCccEEEeecC-CCCc--cCccccCCCCCcEEEeecC-CCcc--CchhhhcCc-cCcEEEcccCC--CC-
Q 037889 8 IPASILSSGLSSLDRLDLRGC-GLTA--IPQEIGCLSSLKELDICEN-NFES--LPASIMQLS-RLTYLYLSKCN--ML- 77 (339)
Q Consensus 8 lP~~~~~~~l~~L~~L~Ls~n-~l~~--lP~~i~~l~~L~~L~Ls~n-~l~~--lP~~i~~l~-~L~~L~L~~c~--~l- 77 (339)
.|.. +..+++|++|+|++| .++. +|..+..+++|+.|++++| .++. +|..+..++ +|++|+|++|. ..
T Consensus 134 ~~~~--l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 211 (336)
T 2ast_B 134 IVNT--LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211 (336)
T ss_dssp HHHH--HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred HHHH--HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence 4455 678999999999999 7885 7888999999999999999 8984 788899999 99999999984 22
Q ss_pred ccCCCC---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889 78 LSLPEL---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS 123 (339)
Q Consensus 78 ~~lP~~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~ 123 (339)
+.+|.. .++|+.|++++|..++. ..+..+..++.+....++.+.
T Consensus 212 ~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 212 SDLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHHHHHCTTCSEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTCT
T ss_pred HHHHHHHhhCCCCCEEeCCCCCcCCH--HHHHHHhCCCCCCEeeCCCCC
Confidence 445543 47899999999875432 122344555555555555443
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.26 E-value=1.7e-07 Score=85.98 Aligned_cols=87 Identities=25% Similarity=0.305 Sum_probs=72.3
Q ss_pred cCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecC-CCc--cCchhhhcCccCcEEEcccC-CCCcc-CC
Q 037889 8 IPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICEN-NFE--SLPASIMQLSRLTYLYLSKC-NMLLS-LP 81 (339)
Q Consensus 8 lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n-~l~--~lP~~i~~l~~L~~L~L~~c-~~l~~-lP 81 (339)
+|.. +..+++|++|+|++|.++. .|..++.+++|+.|+|++| .++ .+|..+..+++|++|++++| ..... +|
T Consensus 110 ~~~~--~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 110 LHGI--LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHH--HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHH--HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 5555 6789999999999999986 7888999999999999999 788 47888999999999999998 44332 44
Q ss_pred CC---CC-CCCEEecccCc
Q 037889 82 EL---SL-SLKWLDASNCK 96 (339)
Q Consensus 82 ~~---~~-~L~~L~~~~~~ 96 (339)
.. .+ +|+.|++++|.
T Consensus 188 ~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp HHHHHSCTTCCEEECCSCG
T ss_pred HHHHhcccCCCEEEeCCCc
Confidence 42 35 89999999985
No 131
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=2.1e-06 Score=76.69 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=50.2
Q ss_pred CCCCccEEEeecCCCCcc---CccccCCCCCcEEEeecCCCccCchhhhcCc--cCcEEEcccCCCCccCC
Q 037889 16 GLSSLDRLDLRGCGLTAI---PQEIGCLSSLKELDICENNFESLPASIMQLS--RLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~l---P~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~--~L~~L~L~~c~~l~~lP 81 (339)
++++|+.|+|++|.|+.+ |..+..+++|+.|+|++|.|+.+. .+..+. +|+.|+|++|...+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 467888899999888774 456678888999999998888773 455555 88888888887777666
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.09 E-value=6.7e-07 Score=83.87 Aligned_cols=110 Identities=16% Similarity=0.253 Sum_probs=77.0
Q ss_pred CCCCCCccEEEeecCCCC------ccCccccCCCCCcEEEeecCCC-----ccCchhhhcCccCcEEEcccCCCCcc---
Q 037889 14 SSGLSSLDRLDLRGCGLT------AIPQEIGCLSSLKELDICENNF-----ESLPASIMQLSRLTYLYLSKCNMLLS--- 79 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~------~lP~~i~~l~~L~~L~Ls~n~l-----~~lP~~i~~l~~L~~L~L~~c~~l~~--- 79 (339)
+..+++|++|+|++|.|. -+|..+..+++|+.|+|++|.+ ..+|..+..+++|++|+|++|.....
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 556789999999999988 2455788899999999999998 56788889999999999999876544
Q ss_pred -CCCC-----CCCCCEEecccCcCCCc-CCCCCCCc-cccccccccccCCCC
Q 037889 80 -LPEL-----SLSLKWLDASNCKRLQS-LPEIPSSL-EEVDASVFEKLSKHS 123 (339)
Q Consensus 80 -lP~~-----~~~L~~L~~~~~~~l~~-l~~~~~~l-~~l~~~~~~~l~~~~ 123 (339)
+|.. .++|+.|++++|..-.. +...+..+ .+++.+....++.+.
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4442 56789999988753220 00122233 234455555555554
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=2.2e-05 Score=71.84 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=15.2
Q ss_pred cccCCcCcCCCCCCccEEEeecCCCCc
Q 037889 6 VTIPASILSSGLSSLDRLDLRGCGLTA 32 (339)
Q Consensus 6 ~~lP~~~~~~~l~~L~~L~Ls~n~l~~ 32 (339)
+.+++.+ |.++++|+.|++++|.+..
T Consensus 113 ~~I~~~a-F~~~~~L~~l~l~~n~i~~ 138 (329)
T 3sb4_A 113 KNIEDAA-FKGCDNLKICQIRKKTAPN 138 (329)
T ss_dssp CEECTTT-TTTCTTCCEEEBCCSSCCE
T ss_pred cchhHHH-hhcCcccceEEcCCCCccc
Confidence 3455555 6666666666666665433
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.02 E-value=1.3e-06 Score=81.90 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=65.9
Q ss_pred CCccEEEeecCCCCc--cC---ccccCCCCCcEEEeecCCCc------cCchhhhcCccCcEEEcccCCCC----ccCCC
Q 037889 18 SSLDRLDLRGCGLTA--IP---QEIGCLSSLKELDICENNFE------SLPASIMQLSRLTYLYLSKCNML----LSLPE 82 (339)
Q Consensus 18 ~~L~~L~Ls~n~l~~--lP---~~i~~l~~L~~L~Ls~n~l~------~lP~~i~~l~~L~~L~L~~c~~l----~~lP~ 82 (339)
++|++|+|++|.+.. +| ..+..+++|+.|+|++|+++ .+|..+..+++|++|+|++|... ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 899999999999973 66 56888999999999999998 24558889999999999998763 56664
Q ss_pred C---CCCCCEEecccCc
Q 037889 83 L---SLSLKWLDASNCK 96 (339)
Q Consensus 83 ~---~~~L~~L~~~~~~ 96 (339)
. .++|+.|++++|.
T Consensus 239 ~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HGGGCTTCCEEECTTCC
T ss_pred HHccCCCcCEEECCCCC
Confidence 3 3689999999876
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.90 E-value=3.1e-06 Score=78.68 Aligned_cols=83 Identities=20% Similarity=0.230 Sum_probs=56.2
Q ss_pred CCCCCCccEEEeecCCCCccC-----ccccCCC-CCcEEEeecCCCccC-chhhhcC-----ccCcEEEcccCCCCccCC
Q 037889 14 SSGLSSLDRLDLRGCGLTAIP-----QEIGCLS-SLKELDICENNFESL-PASIMQL-----SRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP-----~~i~~l~-~L~~L~Ls~n~l~~l-P~~i~~l-----~~L~~L~L~~c~~l~~lP 81 (339)
+...++|++|+|++|.|+.++ ..+..++ +|+.|+|++|.++.. +..+..+ ++|++|+|++|......+
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 444556888888888887765 4566777 788888888887755 4555554 778888888776544333
Q ss_pred C--------CCCCCCEEecccCc
Q 037889 82 E--------LSLSLKWLDASNCK 96 (339)
Q Consensus 82 ~--------~~~~L~~L~~~~~~ 96 (339)
. .+.+|+.|++++|.
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHHHhCCCCccEEECcCCc
Confidence 2 11567777777765
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.82 E-value=5e-06 Score=77.30 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=69.4
Q ss_pred CCCcccCC----cCcCCCCC-CccEEEeecCCCCcc-CccccCC-----CCCcEEEeecCCCccCc-hh----hhcC-cc
Q 037889 3 RSLVTIPA----SILSSGLS-SLDRLDLRGCGLTAI-PQEIGCL-----SSLKELDICENNFESLP-AS----IMQL-SR 65 (339)
Q Consensus 3 n~L~~lP~----~~~~~~l~-~L~~L~Ls~n~l~~l-P~~i~~l-----~~L~~L~Ls~n~l~~lP-~~----i~~l-~~ 65 (339)
|.++..+. .. +..++ +|++|+|++|.|... +..+..+ ++|+.|+|++|.++..+ .. +..+ ++
T Consensus 32 n~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~ 110 (362)
T 3goz_A 32 NNLYSISTVELIQA-FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFT 110 (362)
T ss_dssp SCGGGSCHHHHHHH-HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred CCCChHHHHHHHHH-HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCC
Confidence 45666664 32 66777 899999999999884 5556664 99999999999998654 43 4445 89
Q ss_pred CcEEEcccCCCCccCCCC--------CCCCCEEecccCc
Q 037889 66 LTYLYLSKCNMLLSLPEL--------SLSLKWLDASNCK 96 (339)
Q Consensus 66 L~~L~L~~c~~l~~lP~~--------~~~L~~L~~~~~~ 96 (339)
|++|+|++|.....-+.. ..+|+.|++++|.
T Consensus 111 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred ccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 999999997754443321 3589999999875
No 137
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=0.0001 Score=61.29 Aligned_cols=90 Identities=16% Similarity=0.256 Sum_probs=64.1
Q ss_pred ccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCC-CccCc-hhhhcC----ccCcEEEcccCCCCcc
Q 037889 7 TIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENN-FESLP-ASIMQL----SRLTYLYLSKCNMLLS 79 (339)
Q Consensus 7 ~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~-l~~lP-~~i~~l----~~L~~L~L~~c~~l~~ 79 (339)
.+|.. ...--.|+.|||++|.|+.. -..+..+++|+.|+|++|. ++.-- ..+..+ ++|++|+|++|..+..
T Consensus 52 ~LP~~--~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 52 HLPTG--PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GSCCC--STTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cCCcc--cCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 45654 22234799999999998762 2457889999999999996 66321 245554 4799999999986542
Q ss_pred -----CCCCCCCCCEEecccCcCCC
Q 037889 80 -----LPELSLSLKWLDASNCKRLQ 99 (339)
Q Consensus 80 -----lP~~~~~L~~L~~~~~~~l~ 99 (339)
+- ..++|+.|++.+|..++
T Consensus 130 ~Gl~~L~-~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 130 KGIIALH-HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHHHGG-GCTTCCEEEEESCTTCC
T ss_pred HHHHHHh-cCCCCCEEECCCCCCCC
Confidence 32 24789999999988654
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.00012 Score=67.00 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=46.9
Q ss_pred CCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCc-hhhhcCccCc-EEEcccCCCCccCCC
Q 037889 17 LSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLP-ASIMQLSRLT-YLYLSKCNMLLSLPE 82 (339)
Q Consensus 17 l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~-~L~L~~c~~l~~lP~ 82 (339)
+++|+.|+|++|+++.||.. |.++++|+.|+|..| ++.|+ ..|.++++|+ .|++.+ .+..++.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEch
Confidence 56788888888888887654 778888888888877 77776 4577888888 888875 4455553
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.52 E-value=0.00016 Score=68.37 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=31.6
Q ss_pred CcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcc
Q 037889 5 LVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLS 72 (339)
Q Consensus 5 L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~ 72 (339)
++.++..+ |.+ .+|+.+.|.+ .++.|+ ..|.++++|+.++|+.|+++.+|.......+|+.+.|.
T Consensus 146 i~~I~~~a-F~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 146 LKSIGDMA-FFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCEECTTT-TTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred ccEECHHh-cCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 44444444 444 2455555543 444443 33555555555555555555555333333455555554
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.47 E-value=1.2e-05 Score=76.76 Aligned_cols=81 Identities=31% Similarity=0.346 Sum_probs=64.0
Q ss_pred CCCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCccC-chhhhc-----CccCcEEEcccCCCCc----cC
Q 037889 16 GLSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFESL-PASIMQ-----LSRLTYLYLSKCNMLL----SL 80 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~-----l~~L~~L~L~~c~~l~----~l 80 (339)
..++|++|+|++|.++. +|..+..+++|+.|+|++|.++.. +..+.. .++|++|+|++|+... .+
T Consensus 311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 390 (461)
T 1z7x_W 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL 390 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHH
Confidence 34689999999999885 467788889999999999998854 333432 6799999999987664 66
Q ss_pred CCC---CCCCCEEecccCc
Q 037889 81 PEL---SLSLKWLDASNCK 96 (339)
Q Consensus 81 P~~---~~~L~~L~~~~~~ 96 (339)
|.. .++|+.|++++|.
T Consensus 391 ~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 391 AATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHCCCCCEEECCSSS
T ss_pred HHHHHhCCCccEEECCCCC
Confidence 754 4789999998875
No 141
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.45 E-value=2.4e-05 Score=74.67 Aligned_cols=79 Identities=27% Similarity=0.405 Sum_probs=40.8
Q ss_pred CCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCccC-----chh-hhcCccCcEEEcccCCCCcc----CC
Q 037889 17 LSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFESL-----PAS-IMQLSRLTYLYLSKCNMLLS----LP 81 (339)
Q Consensus 17 l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~l-----P~~-i~~l~~L~~L~L~~c~~l~~----lP 81 (339)
+++|++|+|++|.++. +|..+..+++|+.|+|++|.++.. ++. +..+++|++|++++|..... +|
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 3456666666666654 355555566666666666655532 111 22355666666665533321 33
Q ss_pred CC---CCCCCEEecccC
Q 037889 82 EL---SLSLKWLDASNC 95 (339)
Q Consensus 82 ~~---~~~L~~L~~~~~ 95 (339)
.. ..+|+.|+++++
T Consensus 278 ~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHCTTCCEEECTTC
T ss_pred HHHhhCCCcceEECCCC
Confidence 32 245555555554
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.31 E-value=5.4e-05 Score=70.84 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=33.2
Q ss_pred CCCccEEEeecCCCCcc-Ccc----c-cCCCCCcEEEeecCCCcc-----CchhhhcCccCcEEEcccCC
Q 037889 17 LSSLDRLDLRGCGLTAI-PQE----I-GCLSSLKELDICENNFES-----LPASIMQLSRLTYLYLSKCN 75 (339)
Q Consensus 17 l~~L~~L~Ls~n~l~~l-P~~----i-~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~L~~c~ 75 (339)
+++|+.|+|++|.|... ... + ...++|+.|+|++|.|+. ++..+..+++|++|+|++|.
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 44566666666666542 111 1 234566666666666653 34445556666666666654
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.25 E-value=8.9e-05 Score=73.01 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=26.4
Q ss_pred CCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCc-----cCchhhhcCccCcEEEcccC
Q 037889 17 LSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFE-----SLPASIMQLSRLTYLYLSKC 74 (339)
Q Consensus 17 l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~-----~lP~~i~~l~~L~~L~L~~c 74 (339)
+++|++|+|++|.+.+ ++..+..+++|+.|+|++|.++ .++..+..+++|+.|+|++|
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 4455555555554322 1122334445555555555543 22333344555555555554
No 144
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.18 E-value=0.00055 Score=53.96 Aligned_cols=53 Identities=26% Similarity=0.320 Sum_probs=41.1
Q ss_pred cEEEeecCCCC--ccCccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCC
Q 037889 21 DRLDLRGCGLT--AIPQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCN 75 (339)
Q Consensus 21 ~~L~Ls~n~l~--~lP~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~ 75 (339)
..++.+++.++ .+|..+. .+|+.|+|++|+|+.||. .|..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 46788888888 7887654 468888888888888874 45678888888888764
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.10 E-value=0.0013 Score=62.11 Aligned_cols=74 Identities=23% Similarity=0.235 Sum_probs=53.9
Q ss_pred CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccC
Q 037889 3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSL 80 (339)
Q Consensus 3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~l 80 (339)
++++.+++.+ |.+ .+|+.+.|..+ ++.|+.. |.+ .+|+.+.|.. .++.|+ ..|.++++|+.++|++| .+..+
T Consensus 122 ~~i~~I~~~a-F~~-~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I 195 (401)
T 4fdw_A 122 NSVKSIPKDA-FRN-SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKL 195 (401)
T ss_dssp TTCCEECTTT-TTT-CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEE
T ss_pred CccCEehHhh-ccc-CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEe
Confidence 4567777776 666 47999988765 7777654 555 5799999885 777776 56888899999999874 45555
Q ss_pred CC
Q 037889 81 PE 82 (339)
Q Consensus 81 P~ 82 (339)
|.
T Consensus 196 ~~ 197 (401)
T 4fdw_A 196 PA 197 (401)
T ss_dssp CT
T ss_pred ch
Confidence 54
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.06 E-value=6.7e-05 Score=73.86 Aligned_cols=81 Identities=16% Similarity=0.088 Sum_probs=45.5
Q ss_pred CCCCccEEEee--c----CCCCccC------ccccCCCCCcEEEeecCCCc-cCchhhhc-CccCcEEEcccCCCCccCC
Q 037889 16 GLSSLDRLDLR--G----CGLTAIP------QEIGCLSSLKELDICENNFE-SLPASIMQ-LSRLTYLYLSKCNMLLSLP 81 (339)
Q Consensus 16 ~l~~L~~L~Ls--~----n~l~~lP------~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~-l~~L~~L~L~~c~~l~~lP 81 (339)
.+++|+.|+|+ + +.++..| ..+..+++|+.|+|++ .++ ..+..+.. +++|+.|+|++|.....-+
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 35677777777 3 4555333 2255666777777765 444 22334443 6677777777665432222
Q ss_pred ----CCCCCCCEEecccCcC
Q 037889 82 ----ELSLSLKWLDASNCKR 97 (339)
Q Consensus 82 ----~~~~~L~~L~~~~~~~ 97 (339)
...++|+.|++++|..
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSC
T ss_pred HHHHhcCCCcCEEECcCCCC
Confidence 1235677777776653
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.01 E-value=0.00032 Score=68.98 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=51.4
Q ss_pred CCCCccEEEeecCCCCc-cCcccc-CCCCCcEEEeecC-CCcc--CchhhhcCccCcEEEcccCCCC-------ccCCCC
Q 037889 16 GLSSLDRLDLRGCGLTA-IPQEIG-CLSSLKELDICEN-NFES--LPASIMQLSRLTYLYLSKCNML-------LSLPEL 83 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~-lP~~i~-~l~~L~~L~Ls~n-~l~~--lP~~i~~l~~L~~L~L~~c~~l-------~~lP~~ 83 (339)
.+++|++|+|++|.++. .+..+. .+++|+.|+|++| .++. ++..+..+++|++|+|++|... ..++..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 45678888888887766 344443 5778888888887 4553 5555557778888888876622 223333
Q ss_pred CCCCCEEecccC
Q 037889 84 SLSLKWLDASNC 95 (339)
Q Consensus 84 ~~~L~~L~~~~~ 95 (339)
.++|+.|++.+|
T Consensus 183 ~~~L~~L~l~~~ 194 (594)
T 2p1m_B 183 YTSLVSLNISCL 194 (594)
T ss_dssp CCCCCEEECTTC
T ss_pred CCcCcEEEeccc
Confidence 346666666655
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.00 E-value=0.00034 Score=62.26 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=49.8
Q ss_pred CCCcccC---CcCcCCCCCCccEEEeecCCCCccCccccCCC--CCcEEEeecCCCc-cCch-------hhhcCccCcEE
Q 037889 3 RSLVTIP---ASILSSGLSSLDRLDLRGCGLTAIPQEIGCLS--SLKELDICENNFE-SLPA-------SIMQLSRLTYL 69 (339)
Q Consensus 3 n~L~~lP---~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~--~L~~L~Ls~n~l~-~lP~-------~i~~l~~L~~L 69 (339)
|+|..++ .. +..+++|+.|+|++|.|+.+ ..+..+. +|+.|+|++|.+. .+|. .+..+++|+.|
T Consensus 180 N~l~~l~~l~~~--~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~L 256 (267)
T 3rw6_A 180 NRLYRLDDMSSI--VQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 256 (267)
T ss_dssp SCCCCCGGGTTH--HHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCccchhH--HhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeE
Confidence 5555544 44 56799999999999999987 3455555 9999999999997 4552 36678888887
Q ss_pred Ec
Q 037889 70 YL 71 (339)
Q Consensus 70 ~L 71 (339)
|=
T Consensus 257 Dg 258 (267)
T 3rw6_A 257 DG 258 (267)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.98 E-value=0.0005 Score=67.57 Aligned_cols=83 Identities=16% Similarity=0.044 Sum_probs=63.6
Q ss_pred CCCCCCccEEEeecCC--CCc-cCccc-cCCCCCcEEEeecCCCc--cCchhhhcCccCcEEEcccCCCCcc-CCC---C
Q 037889 14 SSGLSSLDRLDLRGCG--LTA-IPQEI-GCLSSLKELDICENNFE--SLPASIMQLSRLTYLYLSKCNMLLS-LPE---L 83 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~--l~~-lP~~i-~~l~~L~~L~Ls~n~l~--~lP~~i~~l~~L~~L~L~~c~~l~~-lP~---~ 83 (339)
+.++++|+.|+|++|. ++. .+..+ ..+++|+.|+|++|+++ .+|..+..+++|++|+|++|..... ++. .
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 4468999999998654 665 33334 44889999999999997 4566678899999999999984322 333 2
Q ss_pred CCCCCEEecccCc
Q 037889 84 SLSLKWLDASNCK 96 (339)
Q Consensus 84 ~~~L~~L~~~~~~ 96 (339)
.++|+.|++++|.
T Consensus 512 l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 512 LPSLRYLWVQGYR 524 (592)
T ss_dssp CSSCCEEEEESCB
T ss_pred cCccCeeECcCCc
Confidence 5789999999987
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.90 E-value=0.0011 Score=52.29 Aligned_cols=48 Identities=27% Similarity=0.493 Sum_probs=40.7
Q ss_pred CCCc--ccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCc
Q 037889 3 RSLV--TIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFE 54 (339)
Q Consensus 3 n~L~--~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~ 54 (339)
+.|+ .+|..+ -.+|+.|+|++|+|+.+|.. |..+++|+.|+|++|.+.
T Consensus 18 ~~L~~~~vP~~l----p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 18 RGLTWASLPTAF----PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp SCCCTTTSCSCC----CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCccccCCCCC----CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4567 889873 35799999999999998765 788999999999999875
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.87 E-value=0.0003 Score=58.93 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=60.1
Q ss_pred CCCCCCccEEEeecC-CCCc-----cCccccCCCCCcEEEeecCCCcc-----CchhhhcCccCcEEEcccCCCCcc---
Q 037889 14 SSGLSSLDRLDLRGC-GLTA-----IPQEIGCLSSLKELDICENNFES-----LPASIMQLSRLTYLYLSKCNMLLS--- 79 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n-~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~L~~c~~l~~--- 79 (339)
+...++|++|+|++| .|.. +...+...++|+.|+|++|.|.. +...+...+.|++|+|++|.....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 456789999999999 8874 45667778999999999999873 455667778999999999765432
Q ss_pred -CCCC---CCCCCEEec
Q 037889 80 -LPEL---SLSLKWLDA 92 (339)
Q Consensus 80 -lP~~---~~~L~~L~~ 92 (339)
+.+. ..+|+.|++
T Consensus 112 ~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 112 ALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEe
Confidence 2222 246889998
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.87 E-value=0.00041 Score=58.02 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=33.0
Q ss_pred ccccCCCCCcEEEeecC-CCc-----cCchhhhcCccCcEEEcccCCCCcc----CCCC---CCCCCEEecccCc
Q 037889 35 QEIGCLSSLKELDICEN-NFE-----SLPASIMQLSRLTYLYLSKCNMLLS----LPEL---SLSLKWLDASNCK 96 (339)
Q Consensus 35 ~~i~~l~~L~~L~Ls~n-~l~-----~lP~~i~~l~~L~~L~L~~c~~l~~----lP~~---~~~L~~L~~~~~~ 96 (339)
..+...++|+.|+|++| .+. .+...+...+.|++|+|++|..... +.+. ..+|+.|++++|.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 33455666777777766 654 2344455556677777776543211 1111 1356666666543
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.81 E-value=0.00079 Score=55.95 Aligned_cols=65 Identities=20% Similarity=0.367 Sum_probs=49.6
Q ss_pred CCCCCCccEEEeecCC-CCc-cCccccCC----CCCcEEEeecCC-CccCc-hhhhcCccCcEEEcccCCCCc
Q 037889 14 SSGLSSLDRLDLRGCG-LTA-IPQEIGCL----SSLKELDICENN-FESLP-ASIMQLSRLTYLYLSKCNMLL 78 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~-l~~-lP~~i~~l----~~L~~L~Ls~n~-l~~lP-~~i~~l~~L~~L~L~~c~~l~ 78 (339)
+.++++|+.|+|++|. |+. -=..+..+ ++|+.|+|++|. ++.-- ..+..+++|++|+|++|..+.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 5678999999999995 765 12335554 479999999985 77321 356789999999999997665
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.58 E-value=0.00057 Score=63.83 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=64.1
Q ss_pred CCCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCcc-----CchhhhcCccCcEEEcccCCCCc----cCC
Q 037889 16 GLSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFES-----LPASIMQLSRLTYLYLSKCNMLL----SLP 81 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~L~~c~~l~----~lP 81 (339)
..++|++|+|++|.|+. ++..+...++|++|+|++|.|+. ++..+...++|+.|+|++|.... .++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 45789999999999875 56667889999999999999874 45677888899999999986543 222
Q ss_pred CC---CCCCCEEecccCc
Q 037889 82 EL---SLSLKWLDASNCK 96 (339)
Q Consensus 82 ~~---~~~L~~L~~~~~~ 96 (339)
.. .++|+.|++++|.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHCSSCCEEECTTSS
T ss_pred HHHHhCCCCCEEeccCCC
Confidence 22 2679999999874
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.05 E-value=0.0025 Score=59.24 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=54.1
Q ss_pred CCCCccEEEeecC--C------CCccCccc--cCCCCCcEEEeecCCCcc-Cchhhh---cCccCcEEEcccCCCCc---
Q 037889 16 GLSSLDRLDLRGC--G------LTAIPQEI--GCLSSLKELDICENNFES-LPASIM---QLSRLTYLYLSKCNMLL--- 78 (339)
Q Consensus 16 ~l~~L~~L~Ls~n--~------l~~lP~~i--~~l~~L~~L~Ls~n~l~~-lP~~i~---~l~~L~~L~L~~c~~l~--- 78 (339)
.+++|+.|+|+.+ . +..+...+ ..+++|+.|+|++|.+.. .+..+. .+++|++|+|+.|....
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 6789999998631 1 22222223 357899999999999873 333332 57899999999865443
Q ss_pred -cCCCC---CCCCCEEecccCc
Q 037889 79 -SLPEL---SLSLKWLDASNCK 96 (339)
Q Consensus 79 -~lP~~---~~~L~~L~~~~~~ 96 (339)
.++.. +++|+.|++++|.
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHhhcccCCcceEEECCCCc
Confidence 24433 3678999988763
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.04 E-value=0.018 Score=53.27 Aligned_cols=58 Identities=17% Similarity=0.258 Sum_probs=29.6
Q ss_pred CCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcc
Q 037889 14 SSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLS 72 (339)
Q Consensus 14 ~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~ 72 (339)
|.+..+|+.+.+.. .++.++. .+.++++|+.+.+.++.++.|+ ..|.++.+|+.+.|.
T Consensus 259 F~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 259 LQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 33444444444432 2333332 3455566666666666666554 345556666666554
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.04 E-value=0.027 Score=51.94 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=55.1
Q ss_pred CCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEccc
Q 037889 4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSK 73 (339)
Q Consensus 4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~ 73 (339)
+++.++..+ |.++.+|+.+.+.++.++.|++ .|.++.+|+.+.|..+ ++.|+ ..|.++++|+.+.+..
T Consensus 273 ~i~~i~~~a-F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 273 KVKTVPYLL-CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCSEECTTT-TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cceeccccc-cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 355566666 8899999999999999999864 5889999999999754 88887 4688888888887653
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.46 E-value=0.047 Score=50.79 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=49.4
Q ss_pred CcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcc
Q 037889 5 LVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLS 72 (339)
Q Consensus 5 L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~ 72 (339)
++++++.+ |.++.+|+.+.|.. .++.|++ .|.++++|+.++|..+ ++.|+ ..|..+.+|+.+.+.
T Consensus 59 VtsIg~~A-F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAA-FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTT-TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHH-hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 45677777 88899999999964 5888754 5888999999999754 77776 456677777776665
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.34 E-value=0.1 Score=48.17 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=16.7
Q ss_pred ccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccC
Q 037889 37 IGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74 (339)
Q Consensus 37 i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c 74 (339)
+..+++|+.|+|++|.-..+|. +. +++|+.|+|..|
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~ 203 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISG 203 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECS
T ss_pred HhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecC
Confidence 3444555555555552112332 22 455555555543
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.83 E-value=0.13 Score=47.79 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=52.4
Q ss_pred cCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCCC
Q 037889 8 IPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLPE 82 (339)
Q Consensus 8 lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP~ 82 (339)
++..+ |.+..+|+.+.+. +.++.+++ .|.++.+|+.++|..+ ++.|. ..|.++.+|+.+.|.. .+..++.
T Consensus 279 I~~~a-F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~ 350 (394)
T 4gt6_A 279 IGTGA-FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPE 350 (394)
T ss_dssp ECTTT-TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCG
T ss_pred ecCcc-cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhH
Confidence 44455 7788899999985 56777765 4888899999999754 77776 5688899999998864 2455554
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.81 E-value=0.16 Score=47.14 Aligned_cols=65 Identities=11% Similarity=0.179 Sum_probs=41.3
Q ss_pred cccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEccc
Q 037889 6 VTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSK 73 (339)
Q Consensus 6 ~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~ 73 (339)
+.+...+ |.+...|+.+.+..+. ..+ ...+.++++|+.+.+. +.++.|+ ..|.++.+|+.+.|..
T Consensus 254 ~~i~~~a-F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 254 ARIETHA-FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp EEECTTT-TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred eEcccce-eeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence 3444444 6677777777775433 333 3446677778888775 4566776 4566777788777754
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.43 E-value=0.088 Score=48.91 Aligned_cols=82 Identities=20% Similarity=0.245 Sum_probs=60.1
Q ss_pred cCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCCCCCC
Q 037889 8 IPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLPELSL 85 (339)
Q Consensus 8 lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP~~~~ 85 (339)
+|+.. |....+|+.+.+.++ ++.|++ .|.++++|+.++|.. .++.|+ ..|.++++|+.+.+..+ +..++..
T Consensus 288 i~~~~-F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-- 360 (394)
T 4fs7_A 288 VPEKT-FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGAN-- 360 (394)
T ss_dssp ECTTT-TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTT--
T ss_pred ecccc-ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHH--
Confidence 56665 788899999999754 777754 588899999999974 488886 56889999999988753 5555542
Q ss_pred CCCEEecccCcCCCcC
Q 037889 86 SLKWLDASNCKRLQSL 101 (339)
Q Consensus 86 ~L~~L~~~~~~~l~~l 101 (339)
.+.+|.+|+.+
T Consensus 361 -----aF~~C~~L~~i 371 (394)
T 4fs7_A 361 -----AFQGCINLKKV 371 (394)
T ss_dssp -----TBTTCTTCCEE
T ss_pred -----HhhCCCCCCEE
Confidence 24556666554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.13 E-value=0.17 Score=42.60 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=56.5
Q ss_pred CCCCCccEEEeecC-CCCc-----cCccccCCCCCcEEEeecCCCc-----cCchhhhcCccCcEEEcccCCCCcc----
Q 037889 15 SGLSSLDRLDLRGC-GLTA-----IPQEIGCLSSLKELDICENNFE-----SLPASIMQLSRLTYLYLSKCNMLLS---- 79 (339)
Q Consensus 15 ~~l~~L~~L~Ls~n-~l~~-----lP~~i~~l~~L~~L~Ls~n~l~-----~lP~~i~~l~~L~~L~L~~c~~l~~---- 79 (339)
.+-++|+.|+|++| .|.. +-..+..-+.|+.|+|++|.|. .|-..+..=+.|++|+|+.|..-..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34578999999985 7753 4455667789999999999987 3445566668899999998654321
Q ss_pred CCC---CCCCCCEEecccC
Q 037889 80 LPE---LSLSLKWLDASNC 95 (339)
Q Consensus 80 lP~---~~~~L~~L~~~~~ 95 (339)
+-+ .-..|+.|++.++
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 111 1145788888754
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.45 E-value=0.13 Score=43.21 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=46.0
Q ss_pred CCCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCcc-----CchhhhcCccCcEEEcccC
Q 037889 16 GLSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFES-----LPASIMQLSRLTYLYLSKC 74 (339)
Q Consensus 16 ~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~L~~c 74 (339)
.-++|+.|+|++|.|.. |-..+..=+.|+.|+|++|.|.. |-+.+..-+.|+.|+|++|
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34689999999999874 34455566889999999999873 3445555677999999864
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.99 E-value=58 Score=23.45 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=17.2
Q ss_pred ccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEccc
Q 037889 37 IGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSK 73 (339)
Q Consensus 37 i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~ 73 (339)
|.++++|+.+.|..+ ++.|- ..|.++.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 444444444444432 33343 2455556666665554
Done!