Query 037896
Match_columns 316
No_of_seqs 169 out of 1498
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:22:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 7.8E-65 1.7E-69 447.3 28.2 262 5-292 5-268 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 9.2E-64 2E-68 440.4 29.0 280 5-292 6-289 (300)
3 COG0667 Tas Predicted oxidored 100.0 1.5E-59 3.2E-64 428.7 28.0 264 1-289 1-310 (316)
4 KOG1575 Voltage-gated shaker-l 100.0 5.9E-59 1.3E-63 417.3 26.0 274 1-297 12-334 (336)
5 PRK11172 dkgB 2,5-diketo-D-glu 100.0 5.9E-57 1.3E-61 404.4 29.2 250 12-289 1-253 (267)
6 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.9E-56 6.4E-61 401.2 29.3 262 4-292 5-266 (275)
7 PRK09912 L-glyceraldehyde 3-ph 100.0 1.5E-56 3.2E-61 415.7 28.2 267 1-289 13-334 (346)
8 PRK10625 tas putative aldo-ket 100.0 2E-56 4.3E-61 415.3 28.4 280 1-289 1-340 (346)
9 TIGR01293 Kv_beta voltage-depe 100.0 3.3E-56 7.2E-61 409.1 27.7 261 3-286 1-316 (317)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 1.7E-54 3.8E-59 392.3 28.8 260 3-285 1-284 (285)
11 PLN02587 L-galactose dehydroge 100.0 4.2E-54 9E-59 394.8 27.9 267 3-289 1-301 (314)
12 PRK10376 putative oxidoreducta 100.0 3.4E-53 7.4E-58 384.4 27.7 258 1-288 5-288 (290)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.6E-52 5.7E-57 377.6 22.9 251 16-287 1-282 (283)
14 PRK14863 bifunctional regulato 100.0 3.4E-51 7.4E-56 370.9 20.6 252 11-286 2-280 (292)
15 COG4989 Predicted oxidoreducta 100.0 4.3E-51 9.3E-56 345.7 18.5 265 1-288 1-293 (298)
16 COG1453 Predicted oxidoreducta 100.0 2E-48 4.3E-53 346.7 22.9 262 1-289 1-286 (391)
17 KOG1576 Predicted oxidoreducta 100.0 1.6E-44 3.4E-49 308.0 21.2 264 1-285 22-318 (342)
18 KOG3023 Glutamate-cysteine lig 98.3 2.4E-06 5.2E-11 73.1 7.5 74 135-208 153-227 (285)
19 PF07021 MetW: Methionine bios 91.4 6.5 0.00014 33.3 12.3 104 90-212 60-170 (193)
20 PRK10558 alpha-dehydro-beta-de 88.4 4.6 0.0001 35.9 9.7 101 144-273 10-115 (256)
21 PRK10128 2-keto-3-deoxy-L-rham 87.1 6.5 0.00014 35.2 9.9 103 144-274 9-115 (267)
22 cd03319 L-Ala-DL-Glu_epimerase 85.8 28 0.0006 31.8 13.8 151 26-211 133-289 (316)
23 TIGR03239 GarL 2-dehydro-3-deo 85.7 7.2 0.00016 34.6 9.3 99 146-273 5-108 (249)
24 TIGR00216 ispH_lytB (E)-4-hydr 83.7 33 0.00071 31.0 12.6 108 150-268 153-273 (280)
25 PRK00912 ribonuclease P protei 78.2 46 0.00099 29.0 11.6 171 28-243 15-203 (237)
26 PRK12360 4-hydroxy-3-methylbut 77.2 56 0.0012 29.5 12.7 70 188-268 198-274 (281)
27 COG1748 LYS9 Saccharopine dehy 76.8 16 0.00035 34.6 8.7 79 28-117 78-159 (389)
28 PF03102 NeuB: NeuB family; I 76.6 12 0.00026 33.0 7.4 115 26-166 53-185 (241)
29 PRK08392 hypothetical protein; 76.1 50 0.0011 28.3 16.5 180 30-242 15-209 (215)
30 TIGR02311 HpaI 2,4-dihydroxyhe 75.8 28 0.00061 30.8 9.6 100 144-273 3-108 (249)
31 PF00809 Pterin_bind: Pterin b 74.0 42 0.0009 28.8 10.0 96 98-210 28-125 (210)
32 COG1140 NarY Nitrate reductase 73.5 2.9 6.2E-05 38.9 2.7 53 150-203 263-317 (513)
33 cd03316 MR_like Mandelate race 72.5 81 0.0018 29.2 14.1 148 27-208 139-298 (357)
34 PRK01045 ispH 4-hydroxy-3-meth 70.6 85 0.0019 28.6 13.6 69 189-268 200-275 (298)
35 PRK00087 4-hydroxy-3-methylbut 70.3 73 0.0016 32.4 12.3 69 188-267 195-270 (647)
36 PRK05414 urocanate hydratase; 68.7 88 0.0019 30.7 11.5 126 33-184 116-267 (556)
37 KOG0369 Pyruvate carboxylase [ 67.5 73 0.0016 32.4 10.9 150 28-214 42-197 (1176)
38 COG0761 lytB 4-Hydroxy-3-methy 66.2 41 0.00089 30.4 8.2 118 140-268 145-277 (294)
39 PRK13361 molybdenum cofactor b 64.8 1.2E+02 0.0025 28.0 14.3 106 26-152 45-154 (329)
40 TIGR01228 hutU urocanate hydra 64.0 1.2E+02 0.0026 29.7 11.3 126 33-184 107-258 (545)
41 PLN02746 hydroxymethylglutaryl 63.8 1.1E+02 0.0024 28.5 11.1 150 89-272 68-236 (347)
42 PF01175 Urocanase: Urocanase; 63.4 87 0.0019 30.7 10.3 127 32-184 105-257 (546)
43 PRK04452 acetyl-CoA decarbonyl 62.5 54 0.0012 30.2 8.6 117 96-241 83-205 (319)
44 COG2040 MHT1 Homocysteine/sele 60.1 1.4E+02 0.0029 27.2 15.5 214 27-271 41-296 (300)
45 TIGR02026 BchE magnesium-proto 59.9 99 0.0021 30.3 10.6 139 119-269 204-360 (497)
46 COG3653 N-acyl-D-aspartate/D-g 59.3 1.7E+02 0.0038 28.2 15.2 78 31-114 184-277 (579)
47 COG0635 HemN Coproporphyrinoge 58.2 1E+02 0.0022 29.5 10.1 71 88-163 204-276 (416)
48 COG0773 MurC UDP-N-acetylmuram 57.2 5.7 0.00012 38.2 1.4 59 191-257 80-141 (459)
49 TIGR00190 thiC thiamine biosyn 56.9 70 0.0015 30.4 8.3 67 104-204 152-219 (423)
50 PRK02301 putative deoxyhypusin 56.8 1.3E+02 0.0027 27.8 9.9 139 29-211 43-195 (316)
51 PF01408 GFO_IDH_MocA: Oxidore 56.4 83 0.0018 23.6 8.7 86 143-237 15-114 (120)
52 PF02401 LYTB: LytB protein; 56.0 32 0.00069 31.1 5.9 114 144-268 146-274 (281)
53 PRK05283 deoxyribose-phosphate 55.8 72 0.0016 28.4 8.0 77 26-107 143-227 (257)
54 PRK07535 methyltetrahydrofolat 55.7 87 0.0019 27.9 8.7 100 88-209 25-124 (261)
55 PRK07534 methionine synthase I 55.5 1.8E+02 0.0038 27.1 20.2 207 28-272 44-294 (336)
56 TIGR00126 deoC deoxyribose-pho 55.4 89 0.0019 26.9 8.4 74 26-105 129-205 (211)
57 PRK07328 histidinol-phosphatas 54.6 1.6E+02 0.0034 26.2 14.6 121 30-157 19-159 (269)
58 cd03174 DRE_TIM_metallolyase D 53.8 67 0.0014 28.1 7.7 97 92-208 22-135 (265)
59 cd00423 Pterin_binding Pterin 53.7 1.6E+02 0.0035 26.0 14.2 106 88-210 24-129 (258)
60 COG3623 SgaU Putative L-xylulo 53.4 48 0.001 29.1 6.2 72 9-83 65-156 (287)
61 TIGR01496 DHPS dihydropteroate 53.3 1.6E+02 0.0035 26.1 11.0 102 88-208 23-125 (257)
62 TIGR00321 dhys deoxyhypusine s 52.2 1.9E+02 0.0041 26.5 10.7 141 29-211 31-184 (301)
63 PRK07094 biotin synthase; Prov 52.0 1.6E+02 0.0034 26.9 10.1 121 135-270 70-203 (323)
64 PRK13796 GTPase YqeH; Provisio 51.6 2.1E+02 0.0045 26.8 11.6 119 26-170 54-180 (365)
65 cd01973 Nitrogenase_VFe_beta_l 50.3 2.5E+02 0.0054 27.3 13.3 117 47-177 63-191 (454)
66 cd03322 rpsA The starvation se 49.9 48 0.001 31.0 6.4 69 140-210 202-274 (361)
67 PRK13352 thiamine biosynthesis 49.6 1.1E+02 0.0023 29.3 8.4 68 104-205 155-223 (431)
68 cd00739 DHPS DHPS subgroup of 49.1 1.9E+02 0.0042 25.6 11.3 70 135-209 59-128 (257)
69 PF11242 DUF2774: Protein of u 48.8 24 0.00053 23.9 3.0 22 227-248 15-36 (63)
70 COG2089 SpsE Sialic acid synth 48.4 2.3E+02 0.0049 26.3 10.7 116 26-172 87-225 (347)
71 PRK05692 hydroxymethylglutaryl 48.0 1.5E+02 0.0031 26.9 9.0 98 90-206 27-138 (287)
72 COG1880 CdhB CO dehydrogenase/ 46.8 1.3E+02 0.0029 24.6 7.4 102 29-149 49-169 (170)
73 PRK00164 moaA molybdenum cofac 46.3 2.3E+02 0.0051 25.8 14.5 127 26-173 49-183 (331)
74 PRK13958 N-(5'-phosphoribosyl) 46.2 55 0.0012 28.0 5.7 79 97-199 16-95 (207)
75 KOG1579 Homocysteine S-methylt 46.1 2.4E+02 0.0052 25.9 14.8 218 27-271 51-312 (317)
76 COG0422 ThiC Thiamine biosynth 45.7 2.7E+02 0.0059 26.4 11.9 67 104-204 153-220 (432)
77 cd07944 DRE_TIM_HOA_like 4-hyd 45.0 1E+02 0.0023 27.4 7.5 105 88-207 19-128 (266)
78 COG1149 MinD superfamily P-loo 45.0 35 0.00075 30.7 4.2 50 161-212 201-250 (284)
79 cd03315 MLE_like Muconate lact 42.9 2.3E+02 0.0051 24.9 14.0 150 27-211 85-241 (265)
80 TIGR01278 DPOR_BchB light-inde 42.3 3.2E+02 0.007 26.9 11.1 147 51-211 66-243 (511)
81 PF04748 Polysacc_deac_2: Dive 41.3 2E+02 0.0043 24.8 8.4 104 25-152 70-203 (213)
82 COG4992 ArgD Ornithine/acetylo 41.2 1.1E+02 0.0024 29.1 7.1 64 40-114 39-108 (404)
83 PRK09413 IS2 repressor TnpA; R 41.2 49 0.0011 25.6 4.2 40 26-65 13-53 (121)
84 COG0159 TrpA Tryptophan syntha 39.9 2.8E+02 0.006 24.9 9.7 140 135-285 76-242 (265)
85 PF05913 DUF871: Bacterial pro 39.3 1.2E+02 0.0027 28.4 7.2 200 27-270 12-235 (357)
86 PRK13602 putative ribosomal pr 39.2 73 0.0016 22.9 4.6 58 144-208 3-60 (82)
87 PRK13347 coproporphyrinogen II 39.0 3.1E+02 0.0067 26.5 10.2 104 14-161 163-289 (453)
88 PRK07379 coproporphyrinogen II 38.5 3.4E+02 0.0074 25.7 10.3 73 88-163 182-255 (400)
89 PRK00730 rnpA ribonuclease P; 38.1 1.2E+02 0.0026 24.3 6.0 45 72-116 46-93 (138)
90 PRK00208 thiG thiazole synthas 37.7 2.9E+02 0.0063 24.5 17.6 68 88-172 76-143 (250)
91 PRK00507 deoxyribose-phosphate 37.5 1.4E+02 0.003 26.0 6.8 73 26-105 133-209 (221)
92 cd07948 DRE_TIM_HCS Saccharomy 37.5 2.1E+02 0.0044 25.5 8.1 94 91-208 24-132 (262)
93 COG1210 GalU UDP-glucose pyrop 36.1 37 0.0008 30.5 3.0 34 13-46 8-53 (291)
94 COG1168 MalY Bifunctional PLP- 36.1 3.8E+02 0.0083 25.4 12.3 74 28-116 40-117 (388)
95 COG2102 Predicted ATPases of P 35.9 1.2E+02 0.0027 26.3 6.1 99 135-240 73-177 (223)
96 PRK08609 hypothetical protein; 35.6 4.7E+02 0.01 26.2 16.9 183 30-242 350-553 (570)
97 PRK06294 coproporphyrinogen II 35.4 3.7E+02 0.0081 25.1 10.0 70 88-163 170-243 (370)
98 TIGR02660 nifV_homocitr homoci 35.3 3.8E+02 0.0082 25.1 10.2 93 91-207 25-132 (365)
99 PRK12581 oxaloacetate decarbox 35.3 4.4E+02 0.0095 25.8 14.5 114 26-163 102-216 (468)
100 COG1751 Uncharacterized conser 35.2 1.2E+02 0.0026 24.7 5.5 68 29-104 14-85 (186)
101 PF00682 HMGL-like: HMGL-like 35.1 2.9E+02 0.0063 23.7 11.2 142 89-272 14-176 (237)
102 PRK15072 bifunctional D-altron 34.8 1.9E+02 0.0041 27.5 7.9 68 141-210 246-317 (404)
103 PRK06015 keto-hydroxyglutarate 34.5 1.1E+02 0.0024 26.1 5.6 60 140-206 42-102 (201)
104 COG1751 Uncharacterized conser 34.5 2.6E+02 0.0056 22.9 8.3 74 137-210 12-92 (186)
105 COG4669 EscJ Type III secretor 34.5 1.8E+02 0.004 25.6 6.9 76 26-102 28-122 (246)
106 TIGR01182 eda Entner-Doudoroff 34.2 1.4E+02 0.003 25.7 6.2 60 140-206 46-106 (204)
107 PRK13561 putative diguanylate 33.8 2.2E+02 0.0048 28.7 8.7 70 136-207 532-610 (651)
108 PRK01222 N-(5'-phosphoribosyl) 32.7 1.1E+02 0.0024 26.2 5.5 50 151-205 53-104 (210)
109 PRK14017 galactonate dehydrata 32.0 2.2E+02 0.0048 26.8 7.8 67 141-209 217-287 (382)
110 PF01784 NIF3: NIF3 (NGG1p int 31.9 27 0.00059 30.6 1.6 55 9-64 165-233 (241)
111 KOG1720 Protein tyrosine phosp 31.8 1.1E+02 0.0023 26.5 5.0 55 192-257 139-194 (225)
112 TIGR01862 N2-ase-Ialpha nitrog 31.5 4.8E+02 0.01 25.1 12.3 144 50-210 97-271 (443)
113 cd00308 enolase_like Enolase-s 31.3 3.4E+02 0.0073 23.2 8.9 69 141-211 134-206 (229)
114 COG2185 Sbm Methylmalonyl-CoA 31.1 2.8E+02 0.0061 22.3 10.3 107 31-171 28-135 (143)
115 cd03323 D-glucarate_dehydratas 30.8 1.6E+02 0.0035 27.9 6.7 69 140-210 249-321 (395)
116 PF07287 DUF1446: Protein of u 30.0 1.8E+02 0.0038 27.4 6.6 87 141-238 12-100 (362)
117 cd00668 Ile_Leu_Val_MetRS_core 30.0 1E+02 0.0022 28.0 5.1 47 88-155 82-131 (312)
118 KOG0077 Vesicle coat complex C 29.9 2.1E+02 0.0046 23.9 6.2 37 137-173 7-43 (193)
119 cd00959 DeoC 2-deoxyribose-5-p 29.8 2.2E+02 0.0047 24.1 6.8 72 26-103 128-202 (203)
120 PRK10799 metal-binding protein 29.7 91 0.002 27.5 4.5 23 34-57 199-221 (247)
121 COG3215 PilZ Tfp pilus assembl 29.6 74 0.0016 24.0 3.2 70 28-104 19-111 (117)
122 COG4626 Phage terminase-like p 29.5 1.7E+02 0.0036 29.1 6.5 45 135-179 410-454 (546)
123 PRK03971 putative deoxyhypusin 29.3 4.7E+02 0.01 24.3 9.7 146 29-211 49-214 (334)
124 COG0673 MviM Predicted dehydro 29.1 3.2E+02 0.007 24.7 8.3 99 144-251 20-143 (342)
125 PRK07945 hypothetical protein; 29.0 4.7E+02 0.01 24.2 17.2 24 29-52 111-134 (335)
126 PRK08645 bifunctional homocyst 29.0 6.2E+02 0.013 25.6 18.5 206 27-272 41-286 (612)
127 cd07943 DRE_TIM_HOA 4-hydroxy- 28.9 3E+02 0.0064 24.3 7.8 96 91-207 24-131 (263)
128 PF01118 Semialdhyde_dh: Semia 28.9 80 0.0017 24.2 3.6 28 26-53 74-101 (121)
129 PRK06361 hypothetical protein; 28.8 3.5E+02 0.0077 22.7 14.4 184 30-246 11-200 (212)
130 PF14871 GHL6: Hypothetical gl 28.7 56 0.0012 25.9 2.7 21 191-211 47-67 (132)
131 PRK14456 ribosomal RNA large s 28.7 3.4E+02 0.0074 25.5 8.4 78 135-212 259-353 (368)
132 COG2987 HutU Urocanate hydrata 28.7 1.5E+02 0.0032 28.8 5.8 88 72-184 165-267 (561)
133 PRK13803 bifunctional phosphor 28.6 3.1E+02 0.0068 27.7 8.6 88 99-205 20-108 (610)
134 PRK01221 putative deoxyhypusin 28.5 4.7E+02 0.01 24.1 10.9 138 29-211 41-194 (312)
135 cd04728 ThiG Thiazole synthase 28.1 4.3E+02 0.0092 23.4 17.5 68 88-172 76-143 (248)
136 PRK06740 histidinol-phosphatas 28.0 4.9E+02 0.011 24.0 14.4 61 92-157 156-220 (331)
137 PRK00805 putative deoxyhypusin 27.9 5E+02 0.011 24.1 10.1 142 29-212 32-187 (329)
138 TIGR01060 eno phosphopyruvate 27.8 2.9E+02 0.0063 26.5 8.0 67 141-209 292-365 (425)
139 PRK14455 ribosomal RNA large s 27.2 2.9E+02 0.0063 25.8 7.7 77 136-212 244-337 (356)
140 PRK09490 metH B12-dependent me 27.2 9.1E+02 0.02 26.9 17.5 55 155-209 433-488 (1229)
141 PF06080 DUF938: Protein of un 27.1 84 0.0018 27.0 3.7 40 178-217 108-150 (204)
142 COG0626 MetC Cystathionine bet 27.1 2.9E+02 0.0063 26.3 7.6 76 137-212 112-190 (396)
143 TIGR00289 conserved hypothetic 26.9 3.3E+02 0.0071 23.6 7.4 86 191-290 75-170 (222)
144 TIGR00689 rpiB_lacA_lacB sugar 26.7 3.4E+02 0.0074 21.8 8.7 94 88-208 10-105 (144)
145 TIGR00035 asp_race aspartate r 26.4 4.2E+02 0.0091 22.8 8.7 82 88-175 17-99 (229)
146 PRK01018 50S ribosomal protein 26.3 2E+02 0.0044 21.3 5.3 61 140-207 4-64 (99)
147 cd01822 Lysophospholipase_L1_l 26.3 2.6E+02 0.0057 22.2 6.6 60 150-209 36-109 (177)
148 cd03770 SR_TndX_transposase Se 26.2 1.3E+02 0.0028 23.7 4.5 44 91-150 54-97 (140)
149 PF00356 LacI: Bacterial regul 26.2 49 0.0011 20.9 1.6 41 228-272 2-42 (46)
150 PRK00770 deoxyhypusine synthas 26.2 5.7E+02 0.012 24.3 11.9 49 28-82 36-89 (384)
151 PRK12323 DNA polymerase III su 26.0 2.8E+02 0.006 28.6 7.5 67 88-173 107-175 (700)
152 COG2949 SanA Uncharacterized m 26.0 3.6E+02 0.0079 23.3 7.1 72 137-208 78-180 (235)
153 cd00740 MeTr MeTr subgroup of 25.9 4.6E+02 0.01 23.1 10.1 102 88-210 26-128 (252)
154 TIGR03822 AblA_like_2 lysine-2 25.9 4.9E+02 0.011 23.8 8.8 100 127-234 143-253 (321)
155 PF01081 Aldolase: KDPG and KH 25.9 1.3E+02 0.0027 25.7 4.5 45 155-206 61-106 (196)
156 PRK15418 transcriptional regul 25.8 5.2E+02 0.011 23.7 10.3 230 31-302 18-253 (318)
157 PF10171 DUF2366: Uncharacteri 25.8 1.7E+02 0.0037 24.4 5.2 51 92-162 67-117 (173)
158 cd00405 PRAI Phosphoribosylant 25.5 4E+02 0.0087 22.3 10.7 24 142-165 89-112 (203)
159 PRK15408 autoinducer 2-binding 25.4 5.3E+02 0.011 23.6 10.8 71 72-165 22-93 (336)
160 PF03102 NeuB: NeuB family; I 25.3 2.3E+02 0.0051 24.9 6.3 66 191-271 59-135 (241)
161 PF06506 PrpR_N: Propionate ca 25.3 67 0.0015 26.5 2.8 69 135-206 61-130 (176)
162 PLN02489 homocysteine S-methyl 25.2 5.5E+02 0.012 23.7 21.6 168 74-272 131-332 (335)
163 KOG1196 Predicted NAD-dependen 25.2 1.6E+02 0.0034 27.1 5.1 20 137-156 291-310 (343)
164 cd07939 DRE_TIM_NifV Streptomy 25.0 4.7E+02 0.01 22.9 10.3 97 89-209 20-131 (259)
165 PLN02389 biotin synthase 24.8 6E+02 0.013 24.0 13.5 105 26-152 116-227 (379)
166 COG2089 SpsE Sialic acid synth 24.5 1.3E+02 0.0028 27.8 4.5 66 191-271 93-169 (347)
167 COG2069 CdhD CO dehydrogenase/ 24.5 5.5E+02 0.012 23.5 9.7 102 95-212 157-262 (403)
168 TIGR01579 MiaB-like-C MiaB-lik 24.4 3.1E+02 0.0068 26.0 7.5 140 118-270 148-313 (414)
169 PRK08195 4-hyroxy-2-oxovalerat 24.3 5.7E+02 0.012 23.6 11.6 24 26-49 22-45 (337)
170 COG1099 Predicted metal-depend 24.3 4.9E+02 0.011 22.9 11.8 101 137-245 44-163 (254)
171 PF00388 PI-PLC-X: Phosphatidy 24.2 60 0.0013 25.8 2.2 16 33-48 30-45 (146)
172 PRK01313 rnpA ribonuclease P; 24.2 3.4E+02 0.0075 21.3 6.4 62 72-149 47-113 (129)
173 cd01821 Rhamnogalacturan_acety 24.0 4.1E+02 0.0088 21.8 8.1 88 152-239 36-149 (198)
174 PRK08776 cystathionine gamma-s 23.7 6.3E+02 0.014 23.9 10.0 73 139-212 111-186 (405)
175 COG1104 NifS Cysteine sulfinat 23.5 1.6E+02 0.0035 27.9 5.2 66 136-206 100-176 (386)
176 COG4152 ABC-type uncharacteriz 23.2 2.7E+02 0.0059 25.0 6.1 36 135-172 164-199 (300)
177 PRK02901 O-succinylbenzoate sy 23.1 4.7E+02 0.01 24.1 8.1 18 26-43 51-68 (327)
178 PRK06552 keto-hydroxyglutarate 22.7 2.5E+02 0.0055 24.1 5.9 60 140-206 51-114 (213)
179 PRK14469 ribosomal RNA large s 22.7 5.5E+02 0.012 23.7 8.6 77 136-212 233-325 (343)
180 TIGR03471 HpnJ hopanoid biosyn 22.6 7.1E+02 0.015 24.1 10.4 138 118-271 206-362 (472)
181 PLN00191 enolase 22.5 7.3E+02 0.016 24.2 10.2 69 140-210 324-397 (457)
182 PF00155 Aminotran_1_2: Aminot 22.4 5.9E+02 0.013 23.1 11.1 150 31-212 20-192 (363)
183 PF10007 DUF2250: Uncharacteri 22.1 1.1E+02 0.0025 22.5 3.1 51 91-161 9-59 (92)
184 PRK09058 coproporphyrinogen II 22.1 7.2E+02 0.016 24.0 14.5 121 88-211 43-183 (449)
185 TIGR02329 propionate_PrpR prop 22.1 4.4E+02 0.0095 26.2 8.1 72 136-210 82-154 (526)
186 cd01965 Nitrogenase_MoFe_beta_ 21.9 7E+02 0.015 23.8 14.4 113 50-177 61-185 (428)
187 cd01306 PhnM PhnM is believed 21.9 1.6E+02 0.0035 27.1 4.8 71 137-208 94-183 (325)
188 COG0135 TrpF Phosphoribosylant 21.9 1.2E+02 0.0025 26.2 3.6 43 93-162 66-111 (208)
189 smart00148 PLCXc Phospholipase 21.9 76 0.0016 25.1 2.3 18 32-49 31-48 (135)
190 TIGR02026 BchE magnesium-proto 21.8 7.6E+02 0.016 24.1 10.9 161 26-202 222-392 (497)
191 cd00338 Ser_Recombinase Serine 21.8 1.9E+02 0.0041 22.2 4.6 53 90-159 50-102 (137)
192 COG4130 Predicted sugar epimer 21.8 3.7E+02 0.008 23.5 6.4 51 162-212 50-107 (272)
193 KOG1549 Cysteine desulfurase N 21.7 2.3E+02 0.005 27.3 5.8 71 140-210 144-220 (428)
194 PRK08599 coproporphyrinogen II 21.3 6.7E+02 0.015 23.3 12.0 100 109-211 4-120 (377)
195 COG1801 Uncharacterized conser 21.1 6E+02 0.013 22.7 10.8 94 16-117 4-115 (263)
196 PRK04165 acetyl-CoA decarbonyl 21.0 7.1E+02 0.015 24.2 9.1 86 100-209 121-209 (450)
197 PRK04390 rnpA ribonuclease P; 20.9 4E+02 0.0086 20.5 6.8 46 72-117 44-93 (120)
198 TIGR01378 thi_PPkinase thiamin 20.7 3.4E+02 0.0074 23.0 6.3 73 173-271 34-110 (203)
199 TIGR01120 rpiB ribose 5-phosph 20.6 4.6E+02 0.0099 21.1 8.8 94 88-208 11-106 (143)
200 PRK12268 methionyl-tRNA synthe 20.3 4.2E+02 0.0091 26.3 7.7 47 88-154 73-119 (556)
201 PRK14461 ribosomal RNA large s 20.3 5.2E+02 0.011 24.4 7.7 78 135-212 252-352 (371)
202 TIGR00381 cdhD CO dehydrogenas 20.2 7.5E+02 0.016 23.5 11.2 93 105-211 153-250 (389)
203 PRK14463 ribosomal RNA large s 20.1 4.8E+02 0.01 24.3 7.6 77 136-212 232-325 (349)
204 PF06819 Arc_PepC: Archaeal Pe 20.1 3E+02 0.0066 21.1 5.1 70 68-154 36-105 (110)
205 PRK07003 DNA polymerase III su 20.1 3.6E+02 0.0079 28.3 7.1 91 88-203 102-197 (830)
206 PLN02363 phosphoribosylanthran 20.0 2.5E+02 0.0054 25.0 5.4 80 80-184 49-130 (256)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=7.8e-65 Score=447.28 Aligned_cols=262 Identities=46% Similarity=0.814 Sum_probs=238.6
Q ss_pred eeecCCCCccCccceeccccCCChhHHHHHHHHHHHcCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCC
Q 037896 5 QVRLNCGITIPVLGLGTYSFDNHRETTQLAVHTALKMGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWG 84 (316)
Q Consensus 5 ~lgl~tg~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~ 84 (316)
+..+++|.+||.||||||+++.. ..+.+.|.+|++.|+|+||||..||||+.+|+++++ +.++|+++||+||+|.
T Consensus 5 ~~~l~~g~~iP~iGlGt~~~~~~-~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~----s~v~ReelFittKvw~ 79 (280)
T COG0656 5 KVTLNNGVEIPAIGLGTWQIGDD-EWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKE----SGVPREELFITTKVWP 79 (280)
T ss_pred eeecCCCCcccCcceEeeecCCc-hhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHh----cCCCHHHeEEEeecCC
Confidence 34457889999999999996522 228899999999999999999999999999999998 3459999999999998
Q ss_pred CCC--chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEecccc
Q 037896 85 SDH--DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFS 162 (316)
Q Consensus 85 ~~~--~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 162 (316)
... +.+.+++++||++||+||+|||+||||... .. ..+.++|++|++++++||||+||||||+
T Consensus 80 ~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~~--------------~~~~etw~alE~l~~~G~ir~IGVSNF~ 144 (280)
T COG0656 80 SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-KY--------------VVIEETWKALEELVDEGLIRAIGVSNFG 144 (280)
T ss_pred ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-cC--------------ccHHHHHHHHHHHHhcCCccEEEeeCCC
Confidence 875 999999999999999999999999999532 11 2278999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHH
Q 037896 163 STKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQV 242 (316)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~ 242 (316)
.++++++++..++.|+++|++|||+.++.+++++|+++||.+++||||+. |. .++..+.+.+||++||.|++|+
T Consensus 145 ~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g~-----~l~~~~~l~~Ia~k~g~t~AQv 218 (280)
T COG0656 145 VEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-GG-----KLLDNPVLAEIAKKYGKTPAQV 218 (280)
T ss_pred HHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-cc-----ccccChHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999996 31 2677889999999999999999
Q ss_pred HHHHhhcCCCEEEeCCCCHHHHHHhhcccCCcCCHHHHHHHhchhccccc
Q 037896 243 ALKWGLTKGASVIVKSFNEERMRENMASFNIKLDDEDLLQIDNLEERKIM 292 (316)
Q Consensus 243 al~~~l~~~~~~ivg~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~~~ 292 (316)
+|+|++++|++|||.+++++|++||++++++.||++||+.|+++......
T Consensus 219 ~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 219 ALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred HHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 99999999999999999999999999999999999999999999887543
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=9.2e-64 Score=440.42 Aligned_cols=280 Identities=45% Similarity=0.785 Sum_probs=254.0
Q ss_pred eeecCCCCccCccceeccccCCChhHHHHHHHHHHHcCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCC
Q 037896 5 QVRLNCGITIPVLGLGTYSFDNHRETTQLAVHTALKMGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWG 84 (316)
Q Consensus 5 ~lgl~tg~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~ 84 (316)
.+.|++|.+||.||||||+ .++.++.+.+..|++.|+||||||..||+|+.+|++|++.+.++.++|+++||+||+|.
T Consensus 6 ~~~Ln~G~~mP~iGlGTw~--~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTSKlw~ 83 (300)
T KOG1577|consen 6 TVKLNNGFKMPIIGLGTWQ--SPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITSKLWP 83 (300)
T ss_pred eEeccCCCccceeeeEecc--cChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeeeccCc
Confidence 5778999999999999999 66788999999999999999999999999999999999999888899999999999998
Q ss_pred C--CCchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCC--ccchhhhHhHHHHHHHHHHHHHcCCeeEEEecc
Q 037896 85 S--DHDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPK--EEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSN 160 (316)
Q Consensus 85 ~--~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~ 160 (316)
. .++.++.++++||++||+||+|||++|||...++ ..+.. .+......+..++|++||++++.|++|+|||||
T Consensus 84 ~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~---~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSN 160 (300)
T KOG1577|consen 84 TDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD---SFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSN 160 (300)
T ss_pred cccChhhHHHHHHHHHHHhChhhhheeeEecccccCC---CCCcccccccccccchHHHHHHHHHHHHHcCCceEeeeec
Confidence 5 4489999999999999999999999999987644 11111 122222156889999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHH
Q 037896 161 FSSTKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPA 240 (316)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~ 240 (316)
|+..++++++..+.++|.++|++++|++++.+++++|+++||.|.+||||+.++. .. +++.++.+.+||++|++|++
T Consensus 161 F~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~~-~ll~~~~l~~iA~K~~kt~a 237 (300)
T KOG1577|consen 161 FNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--GS-DLLEDPVLKEIAKKYNKTPA 237 (300)
T ss_pred CCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--cc-ccccCHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999998443 12 67889999999999999999
Q ss_pred HHHHHHhhcCCCEEEeCCCCHHHHHHhhcccCCcCCHHHHHHHhchhccccc
Q 037896 241 QVALKWGLTKGASVIVKSFNEERMRENMASFNIKLDDEDLLQIDNLEERKIM 292 (316)
Q Consensus 241 q~al~~~l~~~~~~ivg~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~~~ 292 (316)
|++|||++++|++|||.++|++|++||++++++.||++|++.|++.....+.
T Consensus 238 QIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 238 QILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNERY 289 (300)
T ss_pred HHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccccee
Confidence 9999999999999999999999999999999999999999999988877654
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.5e-59 Score=428.73 Aligned_cols=264 Identities=34% Similarity=0.530 Sum_probs=233.1
Q ss_pred CCCCeeecCCCCccCccceeccccCC-----ChhHHHHHHHHHHHcCCCEEecCCCCC---ChHHHHHHHHhHhhcCCCC
Q 037896 1 MRSDQVRLNCGITIPVLGLGTYSFDN-----HRETTQLAVHTALKMGYRHFDTAKIYG---SEPALGNALAESILEGTVK 72 (316)
Q Consensus 1 M~~r~lgl~tg~~vs~lglG~~~~~~-----~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~al~~~~~~~~~~ 72 (316)
|+||++| ++|++||+||||||.++. +.+++.++|++|+++||||||||+.|| ||+++|+||+.. + .
T Consensus 1 m~~r~lG-~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~--~ 74 (316)
T COG0667 1 MKYRRLG-RSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G--R 74 (316)
T ss_pred CCceecC-CCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C--C
Confidence 8999999 999999999999999983 233666799999999999999999999 899999999984 2 2
Q ss_pred CCceEEEeccCCCC------------CchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHH
Q 037896 73 RENVFVTSKLWGSD------------HDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEAT 140 (316)
Q Consensus 73 R~~~~I~tK~~~~~------------~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (316)
|++++|+||++... +++|+++++.||+||||||||||++|+|+.. .+.+++
T Consensus 75 Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~-----------------~p~~e~ 137 (316)
T COG0667 75 RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPE-----------------TPIEET 137 (316)
T ss_pred CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCC-----------------CCHHHH
Confidence 89999999996542 2789999999999999999999999999653 668999
Q ss_pred HHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCccccc--HHHHHHHHhcCCeEEEeccCCCCCCCCC
Q 037896 141 WAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ--SKLREICADNKIHVSAYSPLGGPGNSWG 218 (316)
Q Consensus 141 ~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~~~G~~~~ 218 (316)
+++|.+|+++||||+||+||++.+++.++.+.+ .+++++|..||+++++ .+++++|+++||++++|+||++ |.+.+
T Consensus 138 ~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~Ltg 215 (316)
T COG0667 138 LEALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLLTG 215 (316)
T ss_pred HHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-cccCC
Confidence 999999999999999999999999999999886 6789999999999976 4589999999999999999998 64433
Q ss_pred CCCC----------CC------------cHHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhcccCCc
Q 037896 219 STAV----------VE------------SPVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASFNIK 274 (316)
Q Consensus 219 ~~~~----------~~------------~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~~~~ 274 (316)
.... .. ...++++|+++|+|++|+||+|++++| ++||+|+++++||++|+++++..
T Consensus 216 k~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~ 295 (316)
T COG0667 216 KYLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIK 295 (316)
T ss_pred CcCCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCC
Confidence 2110 00 134889999999999999999999997 79999999999999999999999
Q ss_pred CCHHHHHHHhchhcc
Q 037896 275 LDDEDLLQIDNLEER 289 (316)
Q Consensus 275 Lt~e~~~~l~~~~~~ 289 (316)
|+++++++|++....
T Consensus 296 L~~~~~~~l~~~~~~ 310 (316)
T COG0667 296 LSEEELAALDEISAE 310 (316)
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999999977654
No 4
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.9e-59 Score=417.25 Aligned_cols=274 Identities=27% Similarity=0.428 Sum_probs=243.2
Q ss_pred CCCCeeecCCCCccCccceeccccC-----CChhHHHHHHHHHHHcCCCEEecCCCCC---ChHHHHHHHHhHhhcCCCC
Q 037896 1 MRSDQVRLNCGITIPVLGLGTYSFD-----NHRETTQLAVHTALKMGYRHFDTAKIYG---SEPALGNALAESILEGTVK 72 (316)
Q Consensus 1 M~~r~lgl~tg~~vs~lglG~~~~~-----~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~al~~~~~~~~~~ 72 (316)
|.|+++| ++|++||++|||+|.+. .+++++.+++++|+|+|+||||||++|| ||.++|++|+++ ++ +
T Consensus 12 ~~~~~lg-~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~---~~-~ 86 (336)
T KOG1575|consen 12 MLRRKLG-NSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR---GW-R 86 (336)
T ss_pred ceeeecc-CCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc---CC-c
Confidence 6899999 99999999999995432 5889999999999999999999999999 799999999985 43 8
Q ss_pred CCceEEEeccCCCCC---------chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHH
Q 037896 73 RENVFVTSKLWGSDH---------DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAG 143 (316)
Q Consensus 73 R~~~~I~tK~~~~~~---------~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (316)
|++++|+||++.... ..++..++.|++|||++|||||++||+|.. .+.++++++
T Consensus 87 R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~-----------------~piee~m~a 149 (336)
T KOG1575|consen 87 RDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPM-----------------VPIEETMRA 149 (336)
T ss_pred CCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCC-----------------CCHHHHHHH
Confidence 999999999865431 678889999999999999999999999655 668999999
Q ss_pred HHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCccccc---HHHHHHHHhcCCeEEEeccCCCCCCCCCCC
Q 037896 144 MEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ---SKLREICADNKIHVSAYSPLGGPGNSWGST 220 (316)
Q Consensus 144 L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~ 220 (316)
|.+++++|||||||+|+++++++.++...+.++++++|++||++.++ .+++++|++.||++++||||++ |.+.+..
T Consensus 150 L~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~-G~Ltgk~ 228 (336)
T KOG1575|consen 150 LTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGR-GLLTGKY 228 (336)
T ss_pred HHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEeccccc-ceeccCc
Confidence 99999999999999999999999999999888899999999999997 4699999999999999999998 6543311
Q ss_pred C-------------------CC--------CcHHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhccc
Q 037896 221 A-------------------VV--------ESPVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASF 271 (316)
Q Consensus 221 ~-------------------~~--------~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~ 271 (316)
. .. ...++.++|+++|+|++|+||+|+++++ ++||||+++++|++||++|+
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al 308 (336)
T KOG1575|consen 229 KLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGAL 308 (336)
T ss_pred ccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhh
Confidence 1 00 0145889999999999999999999998 89999999999999999999
Q ss_pred CCcCCHHHHHHHhchhcccccccccc
Q 037896 272 NIKLDDEDLLQIDNLEERKIMRGEYL 297 (316)
Q Consensus 272 ~~~Lt~e~~~~l~~~~~~~~~~~~~~ 297 (316)
...||++++.+|++..+.....++++
T Consensus 309 ~~~Lt~e~~~~l~~~~~~~~~~~~~~ 334 (336)
T KOG1575|consen 309 SVKLTPEEIKELEEIIDKILGFGPRS 334 (336)
T ss_pred hccCCHHHHHHHHHhhccccCcCCCC
Confidence 99999999999999988866655543
No 5
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=5.9e-57 Score=404.38 Aligned_cols=250 Identities=38% Similarity=0.660 Sum_probs=224.4
Q ss_pred CccCccceeccccCCChhHHHHHHHHHHHcCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCCC--CCch
Q 037896 12 ITIPVLGLGTYSFDNHRETTQLAVHTALKMGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWGS--DHDD 89 (316)
Q Consensus 12 ~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~--~~~~ 89 (316)
++||.||||||+++ .+++.++++.|++.||||||||+.||+|+.+|++|+.. + ++|+++||+||++.. +++.
T Consensus 1 ~~vs~lglGt~~~~--~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~v~i~TK~~~~~~~~~~ 74 (267)
T PRK11172 1 MSIPAFGLGTFRLK--DQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---G-VPRDELFITTKIWIDNLAKDK 74 (267)
T ss_pred CCCCCEeeEccccC--hHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---C-CChhHeEEEEEeCCCCCCHHH
Confidence 46999999999854 56789999999999999999999999999999999863 3 379999999998643 3488
Q ss_pred HHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHH
Q 037896 90 PISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRL 169 (316)
Q Consensus 90 i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~ 169 (316)
+++++++||+|||+||||+|++|+|+..+. .+.+++|++|++|+++||||+||||||+.+++.++
T Consensus 75 ~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~---------------~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~ 139 (267)
T PRK11172 75 LIPSLKESLQKLRTDYVDLTLIHWPSPNDE---------------VSVEEFMQALLEAKKQGLTREIGISNFTIALMKQA 139 (267)
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCCCCCCC---------------CCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHH
Confidence 999999999999999999999999853211 34678999999999999999999999999999998
Q ss_pred HHhcCC-CCcccccccCcccccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHHhh
Q 037896 170 LDFASV-PPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQVALKWGL 248 (316)
Q Consensus 170 ~~~~~~-~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l 248 (316)
++..+. +++++|++||++++..+++++|+++||++++|+||++ |.+ ...+.+.++|+++|+|++|+||+|++
T Consensus 140 ~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~-G~~------~~~~~l~~~a~~~~~s~aqval~w~l 212 (267)
T PRK11172 140 IAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY-GKV------LKDPVIARIAAKHNATPAQVILAWAM 212 (267)
T ss_pred HHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC-Ccc------cCCHHHHHHHHHhCCCHHHHHHHHHH
Confidence 887654 6899999999999888999999999999999999997 643 33578999999999999999999999
Q ss_pred cCCCEEEeCCCCHHHHHHhhcccCCcCCHHHHHHHhchhcc
Q 037896 249 TKGASVIVKSFNEERMRENMASFNIKLDDEDLLQIDNLEER 289 (316)
Q Consensus 249 ~~~~~~ivg~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~ 289 (316)
+++.+||+|+++++|+++|+++++++||++++++|+++.+.
T Consensus 213 ~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 213 QLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred hCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999765
No 6
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2.9e-56 Score=401.24 Aligned_cols=262 Identities=40% Similarity=0.729 Sum_probs=234.6
Q ss_pred CeeecCCCCccCccceeccccCCChhHHHHHHHHHHHcCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccC
Q 037896 4 DQVRLNCGITIPVLGLGTYSFDNHRETTQLAVHTALKMGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLW 83 (316)
Q Consensus 4 r~lgl~tg~~vs~lglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~ 83 (316)
+.+.|++|+.||.||||||++ +.+++.++|++|++.|+||||||+.||+|+.+|++|+.. + ++|++++|+||++
T Consensus 5 ~~~~l~~g~~v~~lglG~~~~--~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~~~i~tK~~ 78 (275)
T PRK11565 5 TVIKLQDGNVMPQLGLGVWQA--SNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---S-VAREELFITTKLW 78 (275)
T ss_pred ceEEcCCCCccCCcceECccC--CHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---C-CCHHHEEEEEEec
Confidence 345568999999999999984 577899999999999999999999999999999999863 3 3699999999998
Q ss_pred CCCCchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccH
Q 037896 84 GSDHDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSS 163 (316)
Q Consensus 84 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~ 163 (316)
..+.+.+++++++||++||+||||+|++|+|+... ....++|++|++|+++|+||+||||||++
T Consensus 79 ~~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~----------------~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 142 (275)
T PRK11565 79 NDDHKRPREALEESLKKLQLDYVDLYLMHWPVPAI----------------DHYVEAWKGMIELQKEGLIKSIGVCNFQI 142 (275)
T ss_pred CcchHHHHHHHHHHHHHhCCCceEEEEecCCCCCc----------------CcHHHHHHHHHHHHHcCCeeEEeeccCCH
Confidence 76668999999999999999999999999995421 12568999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHH
Q 037896 164 TKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQVA 243 (316)
Q Consensus 164 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~a 243 (316)
+++.+++..++++|.++|++|+++.++.+++++|+++||++++|+||++ |.. .....+.+.++|+++|+|++|+|
T Consensus 143 ~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~~----~~~~~~~l~~ia~~~g~s~aq~a 217 (275)
T PRK11565 143 HHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-GGK----GVFDQKVIRDLADKYGKTPAQIV 217 (275)
T ss_pred HHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCC-CCc----ccccCHHHHHHHHHhCCCHHHHH
Confidence 9999998877788999999999999888999999999999999999986 421 12345789999999999999999
Q ss_pred HHHhhcCCCEEEeCCCCHHHHHHhhcccCCcCCHHHHHHHhchhccccc
Q 037896 244 LKWGLTKGASVIVKSFNEERMRENMASFNIKLDDEDLLQIDNLEERKIM 292 (316)
Q Consensus 244 l~~~l~~~~~~ivg~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~~~ 292 (316)
|+|+++++.+||+|+++++|+++|+++++++|+++++++|+++....++
T Consensus 218 L~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~~ 266 (275)
T PRK11565 218 IRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKRL 266 (275)
T ss_pred HHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCCc
Confidence 9999999988999999999999999999999999999999999765543
No 7
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.5e-56 Score=415.72 Aligned_cols=267 Identities=26% Similarity=0.441 Sum_probs=228.8
Q ss_pred CCCCeeecCCCCccCccceeccc-cC--CChhHHHHHHHHHHHcCCCEEecCCCCC-----ChHHHHHHHHhHhhcCCCC
Q 037896 1 MRSDQVRLNCGITIPVLGLGTYS-FD--NHRETTQLAVHTALKMGYRHFDTAKIYG-----SEPALGNALAESILEGTVK 72 (316)
Q Consensus 1 M~~r~lgl~tg~~vs~lglG~~~-~~--~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-----sE~~lG~al~~~~~~~~~~ 72 (316)
|+||+|| +||++||+||||||+ ++ .+.+++.++|++|+++|||+||||+.|| +|+.+|++|++. ....
T Consensus 13 m~~r~lg-~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~---~~~~ 88 (346)
T PRK09912 13 MQYRYCG-KSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLRED---FAAY 88 (346)
T ss_pred cceeecC-CCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhc---ccCC
Confidence 8999999 999999999999996 55 3556788999999999999999999998 699999999852 1115
Q ss_pred CCceEEEeccCCC----------CCchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHH
Q 037896 73 RENVFVTSKLWGS----------DHDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWA 142 (316)
Q Consensus 73 R~~~~I~tK~~~~----------~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (316)
|+++||+||++.. +++.+++++++||+|||+||||+|++|+|+.. .+.+++|+
T Consensus 89 Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~-----------------~~~~e~~~ 151 (346)
T PRK09912 89 RDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDEN-----------------TPMEETAS 151 (346)
T ss_pred CCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCC-----------------CCHHHHHH
Confidence 9999999997531 12679999999999999999999999999542 44788999
Q ss_pred HHHHHHHcCCeeEEEeccccHHHHHHHHHh---cCCCCcccccccCccccc---HHHHHHHHhcCCeEEEeccCCCCCCC
Q 037896 143 GMEKCLDMGLCRGIGVSNFSSTKIQRLLDF---ASVPPATNQVEMHPMWRQ---SKLREICADNKIHVSAYSPLGGPGNS 216 (316)
Q Consensus 143 ~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~---~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~~G~~ 216 (316)
+|++|+++||||+||||||++++++++.+. ..++++++|++||++++. .+++++|+++||++++|+||++ |.+
T Consensus 152 al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~-G~L 230 (346)
T PRK09912 152 ALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQ-GLL 230 (346)
T ss_pred HHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcC-ccc
Confidence 999999999999999999999988766543 356788999999999874 4699999999999999999997 654
Q ss_pred CCCC--------C--------------CCC------cHHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHH
Q 037896 217 WGST--------A--------------VVE------SPVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRE 266 (316)
Q Consensus 217 ~~~~--------~--------------~~~------~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~e 266 (316)
.+.. . ... .+.+.++|+++|+|++|+||+|++++| ++||||+++++||++
T Consensus 231 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~e 310 (346)
T PRK09912 231 TGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEE 310 (346)
T ss_pred cCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHH
Confidence 3310 0 000 156788999999999999999999998 789999999999999
Q ss_pred hhcccC-CcCCHHHHHHHhchhcc
Q 037896 267 NMASFN-IKLDDEDLLQIDNLEER 289 (316)
Q Consensus 267 nl~a~~-~~Lt~e~~~~l~~~~~~ 289 (316)
|+++++ ++|+++++++|+++.++
T Consensus 311 n~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 311 NVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred HHhhhcCCCCCHHHHHHHHHhhCc
Confidence 999984 89999999999998654
No 8
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2e-56 Score=415.30 Aligned_cols=280 Identities=28% Similarity=0.400 Sum_probs=230.6
Q ss_pred CCCCeeecCCCCccCccceeccccC--CChhHHHHHHHHHHHcCCCEEecCCCCC----------ChHHHHHHHHhHhhc
Q 037896 1 MRSDQVRLNCGITIPVLGLGTYSFD--NHRETTQLAVHTALKMGYRHFDTAKIYG----------SEPALGNALAESILE 68 (316)
Q Consensus 1 M~~r~lgl~tg~~vs~lglG~~~~~--~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----------sE~~lG~al~~~~~~ 68 (316)
|+||+|| +||++||+||||||.+| .+.+++.++|+.|+++||||||||+.|| ||..+|++|+..
T Consensus 1 m~~r~lg-~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~--- 76 (346)
T PRK10625 1 MQYHRIP-HSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR--- 76 (346)
T ss_pred CCceecC-CCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc---
Confidence 9999999 99999999999999987 4678899999999999999999999996 899999999852
Q ss_pred CCCCCCceEEEeccCCC--------------CCchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCC--CCCCCccchh
Q 037896 69 GTVKRENVFVTSKLWGS--------------DHDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTC--YPVPKEEDFE 132 (316)
Q Consensus 69 ~~~~R~~~~I~tK~~~~--------------~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~--~~~~~~~~~~ 132 (316)
+ .|++++|+||++.. +++.+++++++||++||+||||||++|||+....... .+....+.
T Consensus 77 ~--~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~-- 152 (346)
T PRK10625 77 G--SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSA-- 152 (346)
T ss_pred C--CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCccccccccccccccccc--
Confidence 2 59999999998531 2378999999999999999999999999964210000 00000000
Q ss_pred hhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhc---C-CCCcccccccCccccc--HHHHHHHHhcCCeEEE
Q 037896 133 QQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFA---S-VPPATNQVEMHPMWRQ--SKLREICADNKIHVSA 206 (316)
Q Consensus 133 ~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~---~-~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~ 206 (316)
+..+++++|++|++|+++||||+||+|||+.+++.+++..+ . ..+.++|++||++++. .+++++|+++||++++
T Consensus 153 ~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via 232 (346)
T PRK10625 153 PAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLA 232 (346)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEE
Confidence 00347899999999999999999999999999887766532 2 3567899999999876 5799999999999999
Q ss_pred eccCCCCCCCCCC-------CC----CC-------------CcHHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCC
Q 037896 207 YSPLGGPGNSWGS-------TA----VV-------------ESPVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFN 260 (316)
Q Consensus 207 ~~pl~~~G~~~~~-------~~----~~-------------~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~ 260 (316)
|+||++ |.+.+. .. .. ..+.+.++|+++|+|++|+||+|++++| +++|+|+++
T Consensus 233 ~spL~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~ 311 (346)
T PRK10625 233 YSCLAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATT 311 (346)
T ss_pred eccccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCC
Confidence 999997 644221 00 00 0246889999999999999999999998 468999999
Q ss_pred HHHHHHhhcccCCcCCHHHHHHHhchhcc
Q 037896 261 EERMRENMASFNIKLDDEDLLQIDNLEER 289 (316)
Q Consensus 261 ~~~l~enl~a~~~~Lt~e~~~~l~~~~~~ 289 (316)
++|+++|+++++++|++++++.|+++...
T Consensus 312 ~~~l~en~~a~~~~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 312 MEQLKTNIESLHLTLSEEVLAEIEAVHQV 340 (346)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999998653
No 9
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.3e-56 Score=409.09 Aligned_cols=261 Identities=28% Similarity=0.445 Sum_probs=224.7
Q ss_pred CCeeecCCCCccCccceeccc-cC--CChhHHHHHHHHHHHcCCCEEecCCCCC---ChHHHHHHHHhHhhcCCCCCCce
Q 037896 3 SDQVRLNCGITIPVLGLGTYS-FD--NHRETTQLAVHTALKMGYRHFDTAKIYG---SEPALGNALAESILEGTVKRENV 76 (316)
Q Consensus 3 ~r~lgl~tg~~vs~lglG~~~-~~--~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~al~~~~~~~~~~R~~~ 76 (316)
||+|| +||++||+||||||. ++ .+.+++.++|+.|+++|||+||||+.|| ||+.+|++|+.. +. .|+++
T Consensus 1 ~r~lg-~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~-~R~~~ 75 (317)
T TIGR01293 1 YRNLG-KSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GW-RRSSY 75 (317)
T ss_pred CcccC-CCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CC-CcccE
Confidence 78999 999999999999997 43 5778899999999999999999999998 799999999852 22 69999
Q ss_pred EEEeccCCC---------CCchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHH
Q 037896 77 FVTSKLWGS---------DHDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKC 147 (316)
Q Consensus 77 ~I~tK~~~~---------~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 147 (316)
+|+||++.. +++.+++++++||++||+||||+|++|||+.. .+.+++|++|++|
T Consensus 76 ~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~-----------------~~~~e~~~aL~~l 138 (317)
T TIGR01293 76 VITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPN-----------------TPMEETVRAMTYV 138 (317)
T ss_pred EEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCC-----------------CCHHHHHHHHHHH
Confidence 999997421 23789999999999999999999999999543 4478899999999
Q ss_pred HHcCCeeEEEeccccHHHHHHHHHhcC----CCCcccccccCccccc---HHHHHHHHhcCCeEEEeccCCCCCCCCCCC
Q 037896 148 LDMGLCRGIGVSNFSSTKIQRLLDFAS----VPPATNQVEMHPMWRQ---SKLREICADNKIHVSAYSPLGGPGNSWGST 220 (316)
Q Consensus 148 ~~~G~ir~iGvS~~~~~~~~~~~~~~~----~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~ 220 (316)
+++||||+||||||+.+++.++...+. ++++++|++||++.++ .+++++|+++||++++|+||++ |.+.+..
T Consensus 139 ~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Ltg~~ 217 (317)
T TIGR01293 139 INQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVSGKY 217 (317)
T ss_pred HHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccCCCC
Confidence 999999999999999999877755432 5788999999999876 3699999999999999999997 5432210
Q ss_pred ------C-------C-------C---------CcHHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhc
Q 037896 221 ------A-------V-------V---------ESPVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRENMA 269 (316)
Q Consensus 221 ------~-------~-------~---------~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~ 269 (316)
. . . ..+.+.++|+++|+|++|+||+|++++| +++|+|+++++|+++|++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~ 297 (317)
T TIGR01293 218 DSGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLG 297 (317)
T ss_pred CCCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHH
Confidence 0 0 0 0146888999999999999999999997 579999999999999999
Q ss_pred ccCC--cCCHHHHHHHhch
Q 037896 270 SFNI--KLDDEDLLQIDNL 286 (316)
Q Consensus 270 a~~~--~Lt~e~~~~l~~~ 286 (316)
+++. +||++++++|+++
T Consensus 298 a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 298 SLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HhhccCCCCHHHHHHHHhh
Confidence 9986 9999999999864
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.7e-54 Score=392.26 Aligned_cols=260 Identities=41% Similarity=0.642 Sum_probs=233.2
Q ss_pred CCeeecCCCCccCccceeccccCC---ChhHHHHHHHHHHHcCCCEEecCCCCC---ChHHHHHHHHhHhhcCCCCCCce
Q 037896 3 SDQVRLNCGITIPVLGLGTYSFDN---HRETTQLAVHTALKMGYRHFDTAKIYG---SEPALGNALAESILEGTVKRENV 76 (316)
Q Consensus 3 ~r~lgl~tg~~vs~lglG~~~~~~---~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~al~~~~~~~~~~R~~~ 76 (316)
||+|| +||++||.||||||.++. +.+++.++++.|++.|||+||||+.|| +|+.+|++|+.. + .|+++
T Consensus 1 ~r~lg-~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~--~R~~~ 74 (285)
T cd06660 1 YRTLG-KTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G--PREEV 74 (285)
T ss_pred CcccC-CCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C--CcCcE
Confidence 68999 999999999999999873 568999999999999999999999999 899999999974 1 49999
Q ss_pred EEEeccCCCC-------CchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHH
Q 037896 77 FVTSKLWGSD-------HDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLD 149 (316)
Q Consensus 77 ~I~tK~~~~~-------~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 149 (316)
+|+||++... .+.+++++++||++||+||||+|+||+|+...+ ...++|++|+++++
T Consensus 75 ~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~----------------~~~~~~~~l~~l~~ 138 (285)
T cd06660 75 FIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTP----------------DIEETLRALEELVK 138 (285)
T ss_pred EEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCC----------------CHHHHHHHHHHHHH
Confidence 9999998663 488999999999999999999999999965421 27889999999999
Q ss_pred cCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCcccccH--HHHHHHHhcCCeEEEeccCCCCCCCCCCCCCC----
Q 037896 150 MGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQS--KLREICADNKIHVSAYSPLGGPGNSWGSTAVV---- 223 (316)
Q Consensus 150 ~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~--~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~---- 223 (316)
+|+||+||||||+++.+.+++..+..+|+++|++||++++.. +++++|+++||++++|+||++ |.+.......
T Consensus 139 ~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~~~~~~~ 217 (285)
T cd06660 139 EGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYLPGAPPP 217 (285)
T ss_pred cCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCCCCCCCC
Confidence 999999999999999999999888789999999999999985 599999999999999999997 6554322211
Q ss_pred ---CcHHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhcccCCcCCHHHHHHHhc
Q 037896 224 ---ESPVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASFNIKLDDEDLLQIDN 285 (316)
Q Consensus 224 ---~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~~~~Lt~e~~~~l~~ 285 (316)
....+..++++++++++|+|++|++++| ++||+|+++++|+++|+++...+||+++++.|++
T Consensus 218 ~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 218 EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 1356889999999999999999999996 8999999999999999999999999999999986
No 11
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=4.2e-54 Score=394.81 Aligned_cols=267 Identities=20% Similarity=0.263 Sum_probs=224.2
Q ss_pred CCeeecCCCCccCccceeccccC-----CChhHHHHHHHHHHHcCCCEEecCCCCC---ChHHHHHHHHhHhhcCCCCCC
Q 037896 3 SDQVRLNCGITIPVLGLGTYSFD-----NHRETTQLAVHTALKMGYRHFDTAKIYG---SEPALGNALAESILEGTVKRE 74 (316)
Q Consensus 3 ~r~lgl~tg~~vs~lglG~~~~~-----~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~al~~~~~~~~~~R~ 74 (316)
||+|| +||++||.||||||+++ .+.+++.++|+.|+++|||+||||+.|| +|+.+|++|++. + ..|+
T Consensus 1 ~r~lg-~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~-~~R~ 75 (314)
T PLN02587 1 LRELG-STGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---G-IPRE 75 (314)
T ss_pred CCcCC-CCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---C-CCcc
Confidence 79999 99999999999999875 4678899999999999999999999997 699999999863 2 2699
Q ss_pred ceEEEeccCCC------CCchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHH
Q 037896 75 NVFVTSKLWGS------DHDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCL 148 (316)
Q Consensus 75 ~~~I~tK~~~~------~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 148 (316)
++||+||++.. +++.+++++++||++||+||||+|++|+|+..++. ...+++|++|++|+
T Consensus 76 ~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~--------------~~~~~~~~~l~~l~ 141 (314)
T PLN02587 76 KYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLD--------------QIVNETIPALQKLK 141 (314)
T ss_pred eEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchh--------------hhHHHHHHHHHHHH
Confidence 99999998742 23789999999999999999999999999532211 34678999999999
Q ss_pred HcCCeeEEEeccccHHHHHHHHHhcC---CCCcccccccCccccc-HHHHHHHHhcCCeEEEeccCCCCCCCCCCC--CC
Q 037896 149 DMGLCRGIGVSNFSSTKIQRLLDFAS---VPPATNQVEMHPMWRQ-SKLREICADNKIHVSAYSPLGGPGNSWGST--AV 222 (316)
Q Consensus 149 ~~G~ir~iGvS~~~~~~~~~~~~~~~---~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~--~~ 222 (316)
++||||+||+|||+++++..+..... +.+..+|+.||+.++. .+++++|+++||++++|+||++ |.+.+.. ..
T Consensus 142 ~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~~~~ 220 (314)
T PLN02587 142 ESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGPPEW 220 (314)
T ss_pred HCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCCCCC
Confidence 99999999999999988877765432 3344467888887654 5899999999999999999997 7554321 10
Q ss_pred C-C-------cHHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhcccC----CcCCHHHHHHHhchhc
Q 037896 223 V-E-------SPVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASFN----IKLDDEDLLQIDNLEE 288 (316)
Q Consensus 223 ~-~-------~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~~----~~Lt~e~~~~l~~~~~ 288 (316)
. . .+.+.++|+++++|++|+||+|++++| ++||+|+++++|+++|+++++ .+|+++++++|+++..
T Consensus 221 ~~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 221 HPAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILA 300 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhc
Confidence 0 0 134678999999999999999999998 678999999999999999976 3799999999998875
Q ss_pred c
Q 037896 289 R 289 (316)
Q Consensus 289 ~ 289 (316)
.
T Consensus 301 ~ 301 (314)
T PLN02587 301 P 301 (314)
T ss_pred c
Confidence 3
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.4e-53 Score=384.39 Aligned_cols=258 Identities=25% Similarity=0.379 Sum_probs=222.9
Q ss_pred CCCCeeecCCCCccCccceeccccC--------CChhHHHHHHHHHHHcCCCEEecCCCCC---ChHHHHHHHHhHhhcC
Q 037896 1 MRSDQVRLNCGITIPVLGLGTYSFD--------NHRETTQLAVHTALKMGYRHFDTAKIYG---SEPALGNALAESILEG 69 (316)
Q Consensus 1 M~~r~lgl~tg~~vs~lglG~~~~~--------~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~al~~~~~~~ 69 (316)
|..+++.++ |++||+||||||+++ .+++++.++|+.|+++|||+||||+.|| +|+.+|++++.
T Consensus 5 ~~~~~~~l~-g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~----- 78 (290)
T PRK10376 5 MSSGTFTLG-GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP----- 78 (290)
T ss_pred ccCCceecC-CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-----
Confidence 556677765 999999999999875 2467899999999999999999999998 58899999964
Q ss_pred CCCCCceEEEeccCC-----------CCCchHHHHHHHHHHhhCCCccceEeeecCCC-CCCCCCCCCCCccchhhhHhH
Q 037896 70 TVKRENVFVTSKLWG-----------SDHDDPISALNQTLKNLGMEYVDMYLVHWPVR-LKPWTCYPVPKEEDFEQQLEF 137 (316)
Q Consensus 70 ~~~R~~~~I~tK~~~-----------~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~-~~~~~~~~~~~~~~~~~~~~~ 137 (316)
.|+++||+||++. .+++.+++++++||+|||+||||+|++|++.. ..|. . ...
T Consensus 79 --~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~---------~----~~~ 143 (290)
T PRK10376 79 --YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPA---------E----GSI 143 (290)
T ss_pred --CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCC---------C----CCH
Confidence 5999999999743 12378999999999999999999999998632 1111 0 336
Q ss_pred HHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCccccc-HHHHHHHHhcCCeEEEeccCCCCCCC
Q 037896 138 EATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ-SKLREICADNKIHVSAYSPLGGPGNS 216 (316)
Q Consensus 138 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~v~~~~pl~~~G~~ 216 (316)
.++|++|++|+++||||+||||||+++++.++.+.+ +++++|++||++++. .+++++|+++||++++|+||++ +.
T Consensus 144 ~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~~- 219 (290)
T PRK10376 144 EEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-FT- 219 (290)
T ss_pred HHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-CC-
Confidence 789999999999999999999999999999988774 568899999999876 6799999999999999999974 42
Q ss_pred CCCCCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhcccCCcCCHHHHHHHhchhc
Q 037896 217 WGSTAVVESPVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASFNIKLDDEDLLQIDNLEE 288 (316)
Q Consensus 217 ~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~ 288 (316)
....+.+.++|+++|+|++|+||+|+++++ +++|+|+++++|+++|+++++++|++++++.|+++.+
T Consensus 220 -----~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 220 -----PLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred -----hhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 123478999999999999999999999874 7899999999999999999999999999999998754
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=2.6e-52 Score=377.64 Aligned_cols=251 Identities=36% Similarity=0.616 Sum_probs=212.2
Q ss_pred ccceeccccC---CChhHHHHHHHHHHHcCCCEEecCCCCC---ChHHHHHHHHhHhhcCCCCCCceEEEecc-------
Q 037896 16 VLGLGTYSFD---NHRETTQLAVHTALKMGYRHFDTAKIYG---SEPALGNALAESILEGTVKRENVFVTSKL------- 82 (316)
Q Consensus 16 ~lglG~~~~~---~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~al~~~~~~~~~~R~~~~I~tK~------- 82 (316)
+||||||+++ .+.+++.++|+.|++.|||+||||+.|| +|+.+|++|++ ...+|++++|+||+
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~----~~~~r~~~~i~tK~~~~~~~~ 76 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRK----SRVPRDDIFISTKVYGDGKPE 76 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHH----TSSTGGGSEEEEEEESSSSTG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccc----ccccccccccccccccccccc
Confidence 5899999985 7889999999999999999999999993 89999999998 23389999999999
Q ss_pred CCCCCchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEecccc
Q 037896 83 WGSDHDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFS 162 (316)
Q Consensus 83 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 162 (316)
...+.+.+++++++||++||+||||+|++|+|+... ....++|++|++|+++|+||+||||||+
T Consensus 77 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~----------------~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 140 (283)
T PF00248_consen 77 PDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSE----------------DALEEVWEALEELKKEGKIRHIGVSNFS 140 (283)
T ss_dssp GGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTS----------------SHHHHHHHHHHHHHHTTSEEEEEEES--
T ss_pred ccccccccccccccccccccccchhccccccccccc----------------cccchhhhhhhhcccccccccccccccc
Confidence 233338999999999999999999999999997542 2388999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccccccCcccc--cHHHHHHHHhcCCeEEEeccCCCCCCCCCCCC--------------CCCcH
Q 037896 163 STKIQRLLDFASVPPATNQVEMHPMWR--QSKLREICADNKIHVSAYSPLGGPGNSWGSTA--------------VVESP 226 (316)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~q~~~~~~~~--~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~--------------~~~~~ 226 (316)
++.+..+.....++|+++|++||++.+ .++++++|+++||++++|+|+++ |.+.+... ....+
T Consensus 141 ~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (283)
T PF00248_consen 141 PEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDAQELAD 219 (283)
T ss_dssp HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTHGGGHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchhhhhhh
Confidence 999999977777999999999999933 37899999999999999999997 65432110 13457
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhcccCCcCCHHHHHHHhchh
Q 037896 227 VIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASFNIKLDDEDLLQIDNLE 287 (316)
Q Consensus 227 ~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~ 287 (316)
.+.++++++|+|++|+||+|+++++ .+||+|+++++|+++|+++++.+||++++++|+++.
T Consensus 220 ~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 220 ALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 8999999999999999999999875 899999999999999999999999999999999874
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=3.4e-51 Score=370.90 Aligned_cols=252 Identities=19% Similarity=0.212 Sum_probs=213.0
Q ss_pred CCccCccceeccccCC------------ChhHHHHHHHHHHHcCCCEEecCCCCC-ChHHHHHHHHhHhhcCCCCCCceE
Q 037896 11 GITIPVLGLGTYSFDN------------HRETTQLAVHTALKMGYRHFDTAKIYG-SEPALGNALAESILEGTVKRENVF 77 (316)
Q Consensus 11 g~~vs~lglG~~~~~~------------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-sE~~lG~al~~~~~~~~~~R~~~~ 77 (316)
+++||+||||||.+|. +.+++.++|+.|+++||||||||+.|| ||..+|++|++. .|++++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~------~~~~~~ 75 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP------VPFRVT 75 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC------CceEee
Confidence 6889999999998862 578899999999999999999999999 799999999741 356799
Q ss_pred EEeccCCCCCchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEE
Q 037896 78 VTSKLWGSDHDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIG 157 (316)
Q Consensus 78 I~tK~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iG 157 (316)
|+||.....++.+++++++||+|||+||||+|++|+|+.... ...+++|++|++|+++||||+||
T Consensus 76 i~tk~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~---------------~~~~~~~~~l~~l~~~Gkir~iG 140 (292)
T PRK14863 76 LSTVRADRGPDFVEAEARASLRRMGVERADAILVHSPTELFG---------------PHGAALWERLQALKDQGLFAKIG 140 (292)
T ss_pred cccccccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcC---------------cchHHHHHHHHHHHHcCCcceEe
Confidence 999965445588999999999999999999999999853100 11257899999999999999999
Q ss_pred eccccHHHHHHHHHhcCCCCcccccccCccccc---HHHHHHHHhcCCeEEEeccCCCCCCCCCCCCC----C-----Cc
Q 037896 158 VSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ---SKLREICADNKIHVSAYSPLGGPGNSWGSTAV----V-----ES 225 (316)
Q Consensus 158 vS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~----~-----~~ 225 (316)
||||+++++..+... .+|+++|++||+++++ .+++++|+++||++++|+||++ |.++..... . ..
T Consensus 141 vSn~~~~~~~~~~~~--~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~~~~ 217 (292)
T PRK14863 141 VSAHASDDPVGVARR--FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLKGASGRL 217 (292)
T ss_pred eeccCHHHHHHHHhc--CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchhhhhHHH
Confidence 999999988877643 6889999999999986 3599999999999999999997 766543211 0 11
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhcccCCcCCHHHHHHHhch
Q 037896 226 PVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASFNIKLDDEDLLQIDNL 286 (316)
Q Consensus 226 ~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~~~~Lt~e~~~~l~~~ 286 (316)
..+.+++.++++|++|+||+|++++| +++|+|+++++|+++|+++.+.+++++.+++|..-
T Consensus 218 ~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~ 280 (292)
T PRK14863 218 SRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAID 280 (292)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCC
Confidence 34566778889999999999999998 78899999999999999999989999888887643
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=4.3e-51 Score=345.71 Aligned_cols=265 Identities=26% Similarity=0.383 Sum_probs=237.4
Q ss_pred CCCCeeecCCCCccCccceeccccC---CChhHHHHHHHHHHHcCCCEEecCCCCC---ChHHHHHHHHhHhhcCCCCCC
Q 037896 1 MRSDQVRLNCGITIPVLGLGTYSFD---NHRETTQLAVHTALKMGYRHFDTAKIYG---SEPALGNALAESILEGTVKRE 74 (316)
Q Consensus 1 M~~r~lgl~tg~~vs~lglG~~~~~---~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~al~~~~~~~~~~R~ 74 (316)
|++.+++ +.|+++|++.+|+|++. ....+....|+.|++.|||+||-|+.|| .|+++|++|+.. +-.|+
T Consensus 1 m~rI~l~-~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~----p~lRe 75 (298)
T COG4989 1 MQRITLA-PDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA----PGLRE 75 (298)
T ss_pred CceEEec-CCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC----hhhhh
Confidence 7888999 99999999999999976 5667888999999999999999999999 599999999863 22699
Q ss_pred ceEEEeccCCCCC--------------chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHH
Q 037896 75 NVFVTSKLWGSDH--------------DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEAT 140 (316)
Q Consensus 75 ~~~I~tK~~~~~~--------------~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (316)
++.|+||.+.... ++|..++++||++|+|||+|+++||+|+.. ++.+++
T Consensus 76 kieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpL-----------------md~eeV 138 (298)
T COG4989 76 KIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL-----------------MDAEEV 138 (298)
T ss_pred heEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCccc-----------------CCHHHH
Confidence 9999999975322 889999999999999999999999999544 779999
Q ss_pred HHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCccccc---HHHHHHHHhcCCeEEEeccCCCCCCCC
Q 037896 141 WAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ---SKLREICADNKIHVSAYSPLGGPGNSW 217 (316)
Q Consensus 141 ~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~~G~~~ 217 (316)
.+|+..|++.|||||+|||||+|.+++.+.+....+.+.||+++|+++.. ++.+++|+.+.|.+++||||++ |..|
T Consensus 139 AeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~g-G~~F 217 (298)
T COG4989 139 AEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGG-GGLF 217 (298)
T ss_pred HHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCC-Cccc
Confidence 99999999999999999999999999999988888899999999999886 6799999999999999999998 5555
Q ss_pred CCCCC--CCcHHHHHHHHHhC-CCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhcccCCcCCHHHHHHHhchhc
Q 037896 218 GSTAV--VESPVIKSIALKHK-ATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASFNIKLDDEDLLQIDNLEE 288 (316)
Q Consensus 218 ~~~~~--~~~~~l~~ia~~~~-~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~ 288 (316)
...+. .-...+..+|.++| +|..+++++|++.+| ..||+|+.+++++++.+++++..||.++|-+|-.+..
T Consensus 218 ~g~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~ 293 (298)
T COG4989 218 LGDDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAI 293 (298)
T ss_pred cCCcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 43222 22468899999999 799999999999999 7999999999999999999999999999999877653
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2e-48 Score=346.70 Aligned_cols=262 Identities=25% Similarity=0.352 Sum_probs=227.5
Q ss_pred CCCCeeecCCCCccCccceeccccC------CChhHHHHHHHHHHHcCCCEEecCCCC--C-ChHHHHHHHHhHhhcCCC
Q 037896 1 MRSDQVRLNCGITIPVLGLGTYSFD------NHRETTQLAVHTALKMGYRHFDTAKIY--G-SEPALGNALAESILEGTV 71 (316)
Q Consensus 1 M~~r~lgl~tg~~vs~lglG~~~~~------~~~~~~~~~l~~A~~~Gi~~~DTA~~Y--g-sE~~lG~al~~~~~~~~~ 71 (316)
|-||++| +||.++|.+|||+|+++ .+.+.+.++|++|+++||||||||..| | ||..+|+||++.
T Consensus 1 Mlyr~~~-k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------ 73 (391)
T COG1453 1 MLYRKFP-KTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------ 73 (391)
T ss_pred CchhhcC-CCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc------
Confidence 8999999 99999999999999987 378899999999999999999999999 6 899999999984
Q ss_pred CCCceEEEeccCCCC---CchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHH
Q 037896 72 KRENVFVTSKLWGSD---HDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCL 148 (316)
Q Consensus 72 ~R~~~~I~tK~~~~~---~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 148 (316)
.|++++++||+.... .+.+++-++++|++||+||+|+|+||.... +.|.. ....++++.+++++
T Consensus 74 ~Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~------------e~~~k-~~~~g~~df~~kak 140 (391)
T COG1453 74 YREKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT------------ETWEK-IERLGVFDFLEKAK 140 (391)
T ss_pred ccceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccH------------HHHHH-HHccChHHHHHHHH
Confidence 699999999997432 388999999999999999999999998743 23444 33444899999999
Q ss_pred HcCCeeEEEecccc-HHHHHHHHHhcCCCCcccccccCccccc-H---HHHHHHHhcCCeEEEeccCCCCCCCCCCCCCC
Q 037896 149 DMGLCRGIGVSNFS-STKIQRLLDFASVPPATNQVEMHPMWRQ-S---KLREICADNKIHVSAYSPLGGPGNSWGSTAVV 223 (316)
Q Consensus 149 ~~G~ir~iGvS~~~-~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~---~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~ 223 (316)
++|+||++|+|.|+ .+.+.+++.. .+++++|++||.++.. . +.+++|.++|++|+.++|+.+||+...
T Consensus 141 ~eGkIr~~GFSfHgs~e~~~~iv~a--~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~----- 213 (391)
T COG1453 141 AEGKIRNAGFSFHGSTEVFKEIVDA--YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN----- 213 (391)
T ss_pred hcCcEEEeeecCCCCHHHHHHHHhc--CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----
Confidence 99999999999996 4677777776 4589999999998876 2 789999999999999999998443222
Q ss_pred CcHHHHHHHHHhC--CCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhcccC--Cc-CCHHHHHHHhchhcc
Q 037896 224 ESPVIKSIALKHK--ATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASFN--IK-LDDEDLLQIDNLEER 289 (316)
Q Consensus 224 ~~~~l~~ia~~~~--~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~~--~~-Lt~e~~~~l~~~~~~ 289 (316)
..+.+++++++.. .||+.+|+||++++| .++++||++++|++||++.++ .| ||+++++.|.++.+.
T Consensus 214 vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~ 286 (391)
T COG1453 214 VPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEI 286 (391)
T ss_pred CCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHH
Confidence 2368899999875 689999999999999 788999999999999999886 44 999999988887655
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.6e-44 Score=308.03 Aligned_cols=264 Identities=19% Similarity=0.222 Sum_probs=217.5
Q ss_pred CCCCeeecCCCCccCccceeccccC-----CChhHHHHHHHHHHHcCCCEEecCCCCC---ChHHHHHHHHhHhhcCCCC
Q 037896 1 MRSDQVRLNCGITIPVLGLGTYSFD-----NHRETTQLAVHTALKMGYRHFDTAKIYG---SEPALGNALAESILEGTVK 72 (316)
Q Consensus 1 M~~r~lgl~tg~~vs~lglG~~~~~-----~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---sE~~lG~al~~~~~~~~~~ 72 (316)
|+||.+| +||++||+||||+..++ .+.++....|..|+.+|||+|||++.|| +|..+|.++++. |
T Consensus 22 meyR~lg-~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~v------P 94 (342)
T KOG1576|consen 22 MEYRQLG-STGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDV------P 94 (342)
T ss_pred HHHhhcC-CCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhC------C
Confidence 8899999 99999999999997764 4778888888889999999999999999 799999999885 9
Q ss_pred CCceEEEeccCCCCC----------chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHH
Q 037896 73 RENVFVTSKLWGSDH----------DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWA 142 (316)
Q Consensus 73 R~~~~I~tK~~~~~~----------~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (316)
|+..||+||++.... +.+++++++||+||++||+|++++|..+.... .. ..+.|++.
T Consensus 95 R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~------------ld-~vl~Etlp 161 (342)
T KOG1576|consen 95 REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPN------------LD-IVLNETLP 161 (342)
T ss_pred hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeeccccccc------------cc-HHHHHHHH
Confidence 999999999976432 88999999999999999999999998765411 01 55889999
Q ss_pred HHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccc--cccCccccc-HHHHHHHHhcCCeEEEeccCCCCCCCCCC
Q 037896 143 GMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQ--VEMHPMWRQ-SKLREICADNKIHVSAYSPLGGPGNSWGS 219 (316)
Q Consensus 143 ~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q--~~~~~~~~~-~~~~~~~~~~gi~v~~~~pl~~~G~~~~~ 219 (316)
+|++++++||||+|||+.++.+.+..+++...-..+++- ++|++.+.. -..+++.+.+|++|+.-++++. |++.+.
T Consensus 162 ~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsm-gLLt~~ 240 (342)
T KOG1576|consen 162 ALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSM-GLLTNQ 240 (342)
T ss_pred HHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHH-HHhhcC
Confidence 999999999999999999999999999887665555555 445443333 3567888899999999999998 766542
Q ss_pred CCCC---Cc-------HHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhcccCCcCCHHHHHHHhc
Q 037896 220 TAVV---ES-------PVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASFNIKLDDEDLLQIDN 285 (316)
Q Consensus 220 ~~~~---~~-------~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~~~~Lt~e~~~~l~~ 285 (316)
.+.. .. .+..++|++.|+..+.+|+.|.++.+ +++++|+++.++++.|+++....||..+-++...
T Consensus 241 gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~ 318 (342)
T KOG1576|consen 241 GPPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLR 318 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHH
Confidence 2211 11 34556778899999999999999987 8999999999999999998766788744333333
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.30 E-value=2.4e-06 Score=73.12 Aligned_cols=74 Identities=24% Similarity=0.416 Sum_probs=68.5
Q ss_pred HhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCccccc-HHHHHHHHhcCCeEEEec
Q 037896 135 LEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ-SKLREICADNKIHVSAYS 208 (316)
Q Consensus 135 ~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~v~~~~ 208 (316)
..+.+.|+.||+++.+|+|..||||.++..+++++.+.+.+.|.++|++..-...- .++.++|.+++|.+..++
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecC
Confidence 56788999999999999999999999999999999999999999999999877665 799999999999998765
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=91.43 E-value=6.5 Score=33.34 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHH
Q 037896 90 PISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRL 169 (316)
Q Consensus 90 i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~ 169 (316)
+...+++.|....-+.+|.+.+..- . .......+.|+++.+-|+---|++.||.-+....-
T Consensus 60 iq~Dld~gL~~f~d~sFD~VIlsqt-----------------L--Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~ 120 (193)
T PF07021_consen 60 IQGDLDEGLADFPDQSFDYVILSQT-----------------L--QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQ 120 (193)
T ss_pred EECCHHHhHhhCCCCCccEEehHhH-----------------H--HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHH
Confidence 4555677788888778888877632 1 12333456688888889888899999998887766
Q ss_pred HHhcCCCCcccccccCccccc-------HHHHHHHHhcCCeEEEeccCCC
Q 037896 170 LDFASVPPATNQVEMHPMWRQ-------SKLREICADNKIHVSAYSPLGG 212 (316)
Q Consensus 170 ~~~~~~~~~~~q~~~~~~~~~-------~~~~~~~~~~gi~v~~~~pl~~ 212 (316)
+-..+--|..-.++|.-++.. ++.-++|++.|+.|.-..++.+
T Consensus 121 l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 121 LLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred HHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 664554556677777665443 6899999999999999999986
No 20
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=88.44 E-value=4.6 Score=35.94 Aligned_cols=101 Identities=18% Similarity=0.062 Sum_probs=70.1
Q ss_pred HHHHHHcCCeeEEEe-ccccHHHHHHHHHhcCCCCcccccccCccccc--HHHHHHHHhcCCeEEEeccCCCCCCCCCCC
Q 037896 144 MEKCLDMGLCRGIGV-SNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ--SKLREICADNKIHVSAYSPLGGPGNSWGST 220 (316)
Q Consensus 144 L~~l~~~G~ir~iGv-S~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~ 220 (316)
|.+-.++|+. -+|+ .......+.+++..++.++.++-.+.++++.. .+++..|+..|+..++.-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 4455555775 3443 33444456677777788888888888887766 5789999999999999887653
Q ss_pred CCCCcHHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhcccCC
Q 037896 221 AVVESPVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASFNI 273 (316)
Q Consensus 221 ~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~~~ 273 (316)
...+..+|..| .+++|-..|.++.++.+++..+
T Consensus 81 --------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 --------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred --------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 12445566666 5666777788888887776665
No 21
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=87.14 E-value=6.5 Score=35.23 Aligned_cols=103 Identities=13% Similarity=-0.036 Sum_probs=72.3
Q ss_pred HHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCccccc--HHHHHHHHhcCCeEEEeccCCCCCCCCCCCC
Q 037896 144 MEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ--SKLREICADNKIHVSAYSPLGGPGNSWGSTA 221 (316)
Q Consensus 144 L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~ 221 (316)
|.+..++|+.-.-...+.....+.+++..++.++.++-.+.+++... ..++..++..|+..++.-|-..
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~--------- 79 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS--------- 79 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC---------
Confidence 44555567754323334444456666777788888888888888766 5789999999999988877542
Q ss_pred CCCcHHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhcccCCc
Q 037896 222 VVESPVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASFNIK 274 (316)
Q Consensus 222 ~~~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~~~~ 274 (316)
...+..+|..| .+++|-..|+++.++.+++..+|
T Consensus 80 -------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYp 115 (267)
T PRK10128 80 -------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYP 115 (267)
T ss_pred -------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCC
Confidence 13456778877 57777888888888888887654
No 22
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=85.80 E-value=28 Score=31.78 Aligned_cols=151 Identities=15% Similarity=0.072 Sum_probs=87.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEecCCCCCChHH--HHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHHHhhCC
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTAKIYGSEPA--LGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTLKNLGM 103 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~--lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~Lg~ 103 (316)
.+.++..+.++.+.+.|++.|+.--.-..+.. .=+++++. .. ++-|.-+........--..+-+.|+..
T Consensus 133 ~~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~------~g-~~~l~vD~n~~~~~~~A~~~~~~l~~~-- 203 (316)
T cd03319 133 DTPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA------AP-DARLRVDANQGWTPEEAVELLRELAEL-- 203 (316)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh------CC-CCeEEEeCCCCcCHHHHHHHHHHHHhc--
Confidence 34566677788888999999986421111222 22334432 12 455666664322211112223344444
Q ss_pred CccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCee-EEEeccccHHHHHHHHHhcCCCCccccc
Q 037896 104 EYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCR-GIGVSNFSSTKIQRLLDFASVPPATNQV 182 (316)
Q Consensus 104 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~~~~~~~~~~~~~~~~q~ 182 (316)
++.++..|-.. +-++.+.+|.+...|. +.|=+-++.+.+..+++... .+++|.
T Consensus 204 ---~l~~iEeP~~~---------------------~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~--~d~v~~ 257 (316)
T cd03319 204 ---GVELIEQPVPA---------------------GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGA--YDGINI 257 (316)
T ss_pred ---CCCEEECCCCC---------------------CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCC--CCEEEE
Confidence 44555555221 1256677788876666 44666678888888887643 456666
Q ss_pred ccCcc---cccHHHHHHHHhcCCeEEEeccCC
Q 037896 183 EMHPM---WRQSKLREICADNKIHVSAYSPLG 211 (316)
Q Consensus 183 ~~~~~---~~~~~~~~~~~~~gi~v~~~~pl~ 211 (316)
..+.. ....++..+|+++|+.++..+-+.
T Consensus 258 ~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~ 289 (316)
T cd03319 258 KLMKTGGLTEALRIADLARAAGLKVMVGCMVE 289 (316)
T ss_pred eccccCCHHHHHHHHHHHHHcCCCEEEECchh
Confidence 65442 122589999999999999875553
No 23
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=85.70 E-value=7.2 Score=34.57 Aligned_cols=99 Identities=16% Similarity=0.004 Sum_probs=67.6
Q ss_pred HHHHcCCeeEEEe-ccccHHHHHHHHHhcCCCCcccccccCccccc--HHHHHHHHhcCCeEEEeccCCCCCCCCCCCCC
Q 037896 146 KCLDMGLCRGIGV-SNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ--SKLREICADNKIHVSAYSPLGGPGNSWGSTAV 222 (316)
Q Consensus 146 ~l~~~G~ir~iGv-S~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~ 222 (316)
+-.++|+.. +|+ ++.....+.+++..++.++.++-.+.++++.. ..++..|+..|+..++.-|-..
T Consensus 5 ~~l~~g~~~-~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~---------- 73 (249)
T TIGR03239 5 QDLLARETL-IGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE---------- 73 (249)
T ss_pred HHHHcCCce-EEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC----------
Confidence 334446643 443 34444456667777788888888888887766 5788999999999999877643
Q ss_pred CCcHHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhcccCC
Q 037896 223 VESPVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASFNI 273 (316)
Q Consensus 223 ~~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~~~ 273 (316)
...++.+|..| .+++|-..|.++.++.+++..+
T Consensus 74 ------------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 ------------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred ------------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 12345566666 4666777788888877776655
No 24
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=83.72 E-value=33 Score=31.02 Aligned_cols=108 Identities=13% Similarity=0.174 Sum_probs=66.7
Q ss_pred cCCeeEEEeccccHHHHHHHHHhcC--C----CCcccccccCcccccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCC
Q 037896 150 MGLCRGIGVSNFSSTKIQRLLDFAS--V----PPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVV 223 (316)
Q Consensus 150 ~G~ir~iGvS~~~~~~~~~~~~~~~--~----~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~ 223 (316)
..++-.+-=.+.+.+....+.+... . -+..+-+-+--..|++.+.+.+++-++-++.-+.=.+
T Consensus 153 ~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSs----------- 221 (280)
T TIGR00216 153 EDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSS----------- 221 (280)
T ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCc-----------
Confidence 4455555555566555555444322 1 1111222222223446789999998887766322221
Q ss_pred CcHHHHHHHHHhCC------CHHHHHHHHhhcCC-CEEEeCCCCHHHHHHhh
Q 037896 224 ESPVIKSIALKHKA------TPAQVALKWGLTKG-ASVIVKSFNEERMRENM 268 (316)
Q Consensus 224 ~~~~l~~ia~~~~~------s~~q~al~~~l~~~-~~~ivg~~~~~~l~enl 268 (316)
.-..|.++|+++|. ++.++-..|.-... +.+..|+|+|+.+-+.+
T Consensus 222 NT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 222 NTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred hHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 23689999999874 67899999988766 78889999999876543
No 25
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=78.16 E-value=46 Score=29.01 Aligned_cols=171 Identities=9% Similarity=0.025 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHHcCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHHHhhCCCccc
Q 037896 28 RETTQLAVHTALKMGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTLKNLGMEYVD 107 (316)
Q Consensus 28 ~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~Lg~d~iD 107 (316)
.....+++..|.+.|+..|=.+++...........+.. .+=+++...-+.....+. +...+++. .+.+|
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~------~~i~Il~GiEi~~~~~~~----~~~~~~~~-~~~~d 83 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL------LGFEIFRGVEIVASNPSK----LRGLVGKF-RKKVD 83 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh------cCCcEEeeEEEecCCHHH----HHHHHHhc-cCccc
Confidence 34577899999999999887777653211111111111 111232222222222122 33333332 23578
Q ss_pred eEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccc---c---HHHHHHHHHhcCCCCcccc
Q 037896 108 MYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNF---S---STKIQRLLDFASVPPATNQ 181 (316)
Q Consensus 108 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~---~---~~~~~~~~~~~~~~~~~~q 181 (316)
++.+| |. .+ +....+.+.+.+.-||-... . ...+.++....+ .++.
T Consensus 84 ~v~v~-~~---------------------~~---~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g---v~lE 135 (237)
T PRK00912 84 VLAVH-GG---------------------DE---KVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN---VAIE 135 (237)
T ss_pred EEEEe-CC---------------------CH---HHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC---eEEE
Confidence 88898 21 01 12235777888877775432 1 112222222222 2344
Q ss_pred cccCccc------------ccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHH
Q 037896 182 VEMHPMW------------RQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQVA 243 (316)
Q Consensus 182 ~~~~~~~------------~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~a 243 (316)
++++++. +...++..|+++|+.++.-|--.. +..+........+++..|.+..++-
T Consensus 136 In~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~------~~~l~~~~~~~~l~~~~Gl~~~~~~ 203 (237)
T PRK00912 136 FNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMS------CYDLRSPREMIALAELFGMEEDEAL 203 (237)
T ss_pred EEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc------ccccCCHHHHHHHHHHcCCCHHHHH
Confidence 4554431 114689999999988865332211 1233345667788888887765543
No 26
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=77.21 E-value=56 Score=29.53 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=52.0
Q ss_pred cccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCC------CHHHHHHHHhhcCC-CEEEeCCCC
Q 037896 188 WRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKA------TPAQVALKWGLTKG-ASVIVKSFN 260 (316)
Q Consensus 188 ~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~-~~~ivg~~~ 260 (316)
.|++.+.+++++-++-++.-+.-.+ .-..|.++|++.+. ++.++-..|+.... +.+..|+|+
T Consensus 198 ~RQ~a~~~La~~vD~miVVGg~~Ss-----------NT~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGAST 266 (281)
T PRK12360 198 KRQESAKELSKEVDVMIVIGGKHSS-----------NTQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGAST 266 (281)
T ss_pred hHHHHHHHHHHhCCEEEEecCCCCc-----------cHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCC
Confidence 3446788899888888776333221 23589999999874 57888889998776 788899999
Q ss_pred HHHHHHhh
Q 037896 261 EERMRENM 268 (316)
Q Consensus 261 ~~~l~enl 268 (316)
|+.+-+.+
T Consensus 267 P~~li~eV 274 (281)
T PRK12360 267 PDWIIEEV 274 (281)
T ss_pred CHHHHHHH
Confidence 99876544
No 27
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=76.80 E-value=16 Score=34.56 Aligned_cols=79 Identities=13% Similarity=0.025 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHcCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCC--chH-HHHHHHHHHhhCCC
Q 037896 28 RETTQLAVHTALKMGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWGSDH--DDP-ISALNQTLKNLGME 104 (316)
Q Consensus 28 ~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~--~~i-~~~~~~sL~~Lg~d 104 (316)
......++++|++.|++++|||.+......+.+.. .+-.+.+..-++.... .-+ ...+++-.+ .++
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a---------~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~--~i~ 146 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEA---------KKAGITAVLGCGFDPGITNVLAAYAAKELFD--EIE 146 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHH---------HHcCeEEEcccCcCcchHHHHHHHHHHHhhc--ccc
Confidence 34456889999999999999998665532233222 2345555555554433 111 222222222 688
Q ss_pred ccceEeeecCCCC
Q 037896 105 YVDMYLVHWPVRL 117 (316)
Q Consensus 105 ~iDl~~lH~p~~~ 117 (316)
+||+|..+.|+..
T Consensus 147 si~iy~g~~g~~~ 159 (389)
T COG1748 147 SIDIYVGGLGEHG 159 (389)
T ss_pred EEEEEEecCCCCC
Confidence 9999999998764
No 28
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=76.64 E-value=12 Score=32.96 Aligned_cols=115 Identities=13% Similarity=0.067 Sum_probs=57.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEecCCCCCChHHH----------------H-HHHHhHhhcCCCCCCceEEEeccCCCCCc
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTAKIYGSEPAL----------------G-NALAESILEGTVKRENVFVTSKLWGSDHD 88 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~l----------------G-~al~~~~~~~~~~R~~~~I~tK~~~~~~~ 88 (316)
.+.++..++.+.+-+.||.||=|.-.-.+-..+ - ..|+.. ++ ....++|+|=.. +.+
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~-A~---tgkPvIlSTG~s--tl~ 126 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYI-AK---TGKPVILSTGMS--TLE 126 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHH-HT---T-S-EEEE-TT----HH
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHH-HH---hCCcEEEECCCC--CHH
Confidence 678889999999999999999775432210000 0 011211 11 344677877443 224
Q ss_pred hHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHc-CCeeEEEeccccHHHH
Q 037896 89 DPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDM-GLCRGIGVSNFSSTKI 166 (316)
Q Consensus 89 ~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvS~~~~~~~ 166 (316)
.|.++++...++ ...++.++|+...+.. ...+--+..+..|++. | --||+|.|+....
T Consensus 127 EI~~Av~~~~~~---~~~~l~llHC~s~YP~---------------~~e~~NL~~i~~L~~~f~--~~vG~SDHt~g~~ 185 (241)
T PF03102_consen 127 EIERAVEVLREA---GNEDLVLLHCVSSYPT---------------PPEDVNLRVIPTLKERFG--VPVGYSDHTDGIE 185 (241)
T ss_dssp HHHHHHHHHHHH---CT--EEEEEE-SSSS-----------------GGG--TTHHHHHHHHST--SEEEEEE-SSSSH
T ss_pred HHHHHHHHHHhc---CCCCEEEEecCCCCCC---------------ChHHcChHHHHHHHHhcC--CCEEeCCCCCCcH
Confidence 555555444222 3578999999865521 1111235666666654 5 4689999986533
No 29
>PRK08392 hypothetical protein; Provisional
Probab=76.07 E-value=50 Score=28.33 Aligned_cols=180 Identities=12% Similarity=0.072 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHcCCCEEecCCCCC--ChHHHHHHHHhHhhcCCCCCCce--EEEeccCCCCCchHHHHHHHHHHhhCCCc
Q 037896 30 TTQLAVHTALKMGYRHFDTAKIYG--SEPALGNALAESILEGTVKRENV--FVTSKLWGSDHDDPISALNQTLKNLGMEY 105 (316)
Q Consensus 30 ~~~~~l~~A~~~Gi~~~DTA~~Yg--sE~~lG~al~~~~~~~~~~R~~~--~I~tK~~~~~~~~i~~~~~~sL~~Lg~d~ 105 (316)
...+.++.|.+.|++.+=.+++.. ....+-..++...+-. .+.++ ++..=+.... +. ....++.++ ..||
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~--~~~~i~il~GiE~~~~~-~~-~~~~~~~~~--~~D~ 88 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG--EESEIVVLAGIEANITP-NG-VDITDDFAK--KLDY 88 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh--hccCceEEEeEEeeecC-Cc-chhHHHHHh--hCCE
Confidence 366899999999999997777653 1111222221110001 11222 2222222222 11 233444444 3466
Q ss_pred cceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEecc-------c-cHHHHHHHHHhc---C
Q 037896 106 VDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSN-------F-SSTKIQRLLDFA---S 174 (316)
Q Consensus 106 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~-------~-~~~~~~~~~~~~---~ 174 (316)
+ +.-+|... ++ .......+.+.++.+.|.+.-+|=-. . ..+.+.++++.+ +
T Consensus 89 v-I~SvH~~~--~~---------------~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g 150 (215)
T PRK08392 89 V-IASVHEWF--GR---------------PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG 150 (215)
T ss_pred E-EEEeecCc--CC---------------cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC
Confidence 5 66778431 11 12456678888888888766555211 1 112333333332 3
Q ss_pred CCCcccccccCcccccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHH
Q 037896 175 VPPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQV 242 (316)
Q Consensus 175 ~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~ 242 (316)
..+.+|- ....+...+++.|++.|+.++.- .=+. .+..+-..+...+++++.|.++.++
T Consensus 151 ~~lEiNt---~~~~p~~~~l~~~~~~G~~~~ig-SDAH-----~~~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 151 KAFEISS---RYRVPDLEFIRECIKRGIKLTFA-SDAH-----RPEDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred CEEEEeC---CCCCCCHHHHHHHHHcCCEEEEe-CCCC-----ChHHCCcHHHHHHHHHHcCCCHHHe
Confidence 3333331 12234568999999999876432 2222 1111212356677888888877654
No 30
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=75.75 E-value=28 Score=30.78 Aligned_cols=100 Identities=16% Similarity=0.058 Sum_probs=64.9
Q ss_pred HHHHHHcCCeeEEEe--ccccHHHHHHHHHhcCCCCcccccccCccccc--HHHHHHHHhcCCeEEEeccCCCCCCCCCC
Q 037896 144 MEKCLDMGLCRGIGV--SNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ--SKLREICADNKIHVSAYSPLGGPGNSWGS 219 (316)
Q Consensus 144 L~~l~~~G~ir~iGv--S~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~~~G~~~~~ 219 (316)
|.+..++|+. -+|+ ...++. +.+.+...+.++.++-++.++.... ..++..|+..|+.+++.-|-..
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~-~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~------- 73 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPY-AAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD------- 73 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcH-HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC-------
Confidence 3444556775 2443 333444 4444555667777777777776444 3577888888888888765432
Q ss_pred CCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCC--CEEEeCCCCHHHHHHhhcccCC
Q 037896 220 TAVVESPVIKSIALKHKATPAQVALKWGLTKG--ASVIVKSFNEERMRENMASFNI 273 (316)
Q Consensus 220 ~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~--~~~ivg~~~~~~l~enl~a~~~ 273 (316)
+ .-++.+|..| .+++|-..+++++++.+++..+
T Consensus 74 -------------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 -------------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -------------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1456777777 5777888889988888887764
No 31
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=73.98 E-value=42 Score=28.79 Aligned_cols=96 Identities=9% Similarity=0.117 Sum_probs=61.7
Q ss_pred HHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHH--cCCeeEEEeccccHHHHHHHHHhcCC
Q 037896 98 LKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLD--MGLCRGIGVSNFSSTKIQRLLDFASV 175 (316)
Q Consensus 98 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~G~ir~iGvS~~~~~~~~~~~~~~~~ 175 (316)
+..-|-++||+ +.....|.. ........++.+...++.+++ .+. -+.|-+++++.++.+++. +.
T Consensus 28 ~~~~GAdiIDI----g~~st~p~~-------~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~ 93 (210)
T PF00809_consen 28 QVEAGADIIDI----GAESTRPGA-------TPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GA 93 (210)
T ss_dssp HHHTT-SEEEE----ESSTSSTTS-------SSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TS
T ss_pred HHHhcCCEEEe----cccccCCCC-------CcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-Cc
Confidence 45668899998 432222210 111222445667777777775 455 488999999999999998 55
Q ss_pred CCcccccccCcccccHHHHHHHHhcCCeEEEeccC
Q 037896 176 PPATNQVEMHPMWRQSKLREICADNKIHVSAYSPL 210 (316)
Q Consensus 176 ~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 210 (316)
++..+...+. ..+++++.++++|..++++..-
T Consensus 94 ~~ind~~~~~---~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 94 DIINDISGFE---DDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp SEEEETTTTS---SSTTHHHHHHHHTSEEEEESES
T ss_pred ceEEeccccc---ccchhhhhhhcCCCEEEEEecc
Confidence 5433333222 2568999999999999997665
No 32
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=73.55 E-value=2.9 Score=38.91 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=34.8
Q ss_pred cCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCcc-cc-cHHHHHHHHhcCCe
Q 037896 150 MGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPM-WR-QSKLREICADNKIH 203 (316)
Q Consensus 150 ~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~-~~-~~~~~~~~~~~gi~ 203 (316)
-|+|||+||--++.+++.++.+.... -++.+.+..++ ++ +..+++.|++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e-~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENE-KDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccH-HHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 39999999999999999887765442 23332222222 22 25677777777765
No 33
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=72.54 E-value=81 Score=29.19 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=85.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEecCCCCCC------hH--HHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHH
Q 037896 27 HRETTQLAVHTALKMGYRHFDTAKIYGS------EP--ALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTL 98 (316)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DTA~~Ygs------E~--~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL 98 (316)
+.++..+.++.+.+.|++.|-.--..+. +. ..=+++++. --+++.|........ .. +...+-+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~------~g~~~~l~vDaN~~~--~~-~~a~~~~ 209 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA------VGPDVDLMVDANGRW--DL-AEAIRLA 209 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh------hCCCCEEEEECCCCC--CH-HHHHHHH
Confidence 4566677778888999998864322221 11 122334432 223555555553221 12 2222333
Q ss_pred HhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCee-EEEeccccHHHHHHHHHhcCCCC
Q 037896 99 KNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCR-GIGVSNFSSTKIQRLLDFASVPP 177 (316)
Q Consensus 99 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~~~~~~~~~~~~~ 177 (316)
++|. ..++.+++.|-.. +.++.+..|++.-.+. ..|=|.++++.+.++++... +
T Consensus 210 ~~l~--~~~i~~iEqP~~~---------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~--~ 264 (357)
T cd03316 210 RALE--EYDLFWFEEPVPP---------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGA--V 264 (357)
T ss_pred HHhC--ccCCCeEcCCCCc---------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCC--C
Confidence 4443 2355667766221 1356677787775555 45566678888888887643 4
Q ss_pred cccccccCcc---cccHHHHHHHHhcCCeEEEec
Q 037896 178 ATNQVEMHPM---WRQSKLREICADNKIHVSAYS 208 (316)
Q Consensus 178 ~~~q~~~~~~---~~~~~~~~~~~~~gi~v~~~~ 208 (316)
+++|+..... .+..++...|+++|+.++..+
T Consensus 265 d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 265 DIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred CEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 6676665433 223689999999999987754
No 34
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=70.63 E-value=85 Score=28.63 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=51.0
Q ss_pred ccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCC------CHHHHHHHHhhcCC-CEEEeCCCCH
Q 037896 189 RQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKA------TPAQVALKWGLTKG-ASVIVKSFNE 261 (316)
Q Consensus 189 ~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~-~~~ivg~~~~ 261 (316)
|++.+.+++++.++-++.-++-.+ .-..|.++|++.+. ++.++-..|+.... +.+..|+|+|
T Consensus 200 RQ~a~~~La~~vD~miVVGg~~Ss-----------NT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP 268 (298)
T PRK01045 200 RQEAVKELAPQADLVIVVGSKNSS-----------NSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAP 268 (298)
T ss_pred HHHHHHHHHhhCCEEEEECCCCCc-----------cHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCC
Confidence 346788899988887776333221 23579999999874 57899999997666 7888999999
Q ss_pred HHHHHhh
Q 037896 262 ERMRENM 268 (316)
Q Consensus 262 ~~l~enl 268 (316)
+.+-+.+
T Consensus 269 ~~li~eV 275 (298)
T PRK01045 269 EWLVQEV 275 (298)
T ss_pred HHHHHHH
Confidence 9776544
No 35
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=70.34 E-value=73 Score=32.44 Aligned_cols=69 Identities=9% Similarity=0.096 Sum_probs=50.9
Q ss_pred cccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCC------CHHHHHHHHhhcCC-CEEEeCCCC
Q 037896 188 WRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKA------TPAQVALKWGLTKG-ASVIVKSFN 260 (316)
Q Consensus 188 ~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~-~~~ivg~~~ 260 (316)
.|++.+.+.|++.++-++.-++-.+ .-..|.++|++.|. ++.++.-.|.-... +.+..|+|+
T Consensus 195 ~Rq~a~~~la~~~d~~~vvGg~~Ss-----------Nt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaSt 263 (647)
T PRK00087 195 VRQEAAEKLAKKVDVMIVVGGKNSS-----------NTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGAST 263 (647)
T ss_pred hHHHHHHHHHhhCCEEEEECCCCCc-----------cHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCC
Confidence 3446788999888887766333221 23689999998874 57888889988766 788899999
Q ss_pred HHHHHHh
Q 037896 261 EERMREN 267 (316)
Q Consensus 261 ~~~l~en 267 (316)
|+.+-+.
T Consensus 264 P~~~i~~ 270 (647)
T PRK00087 264 PDWIIEE 270 (647)
T ss_pred CHHHHHH
Confidence 9977544
No 36
>PRK05414 urocanate hydratase; Provisional
Probab=68.71 E-value=88 Score=30.68 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=86.0
Q ss_pred HHHHHHHHcCCCEEe--cCCCC---C-------ChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHH--------
Q 037896 33 LAVHTALKMGYRHFD--TAKIY---G-------SEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPIS-------- 92 (316)
Q Consensus 33 ~~l~~A~~~Gi~~~D--TA~~Y---g-------sE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~-------- 92 (316)
+-.++.-+.|+..+= ||-+| | +.+.+..+-++.+. +. -+.++||++-++.....+-..
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g~-L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 193 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-GD-LAGRLVLTAGLGGMGGAQPLAATMAGAVC 193 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-CC-CceeEEEEecCCccccccHHHHHhcCceE
Confidence 455667788887553 55544 2 34555556555443 33 588999999998776522111
Q ss_pred -----HHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHH
Q 037896 93 -----ALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQ 167 (316)
Q Consensus 93 -----~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~ 167 (316)
.-...-+|+.+.|+|.+. .+.++.++..++.+++|+..+||+-..-.+.+.
T Consensus 194 i~vEvd~~ri~kR~~~gyld~~~------------------------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~ 249 (556)
T PRK05414 194 LAVEVDESRIDKRLRTGYLDEKA------------------------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLP 249 (556)
T ss_pred EEEEECHHHHHHHHhCCcceeEc------------------------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHH
Confidence 124455889999988742 237889999999999999999999998888888
Q ss_pred HHHHhcC-CCCccccccc
Q 037896 168 RLLDFAS-VPPATNQVEM 184 (316)
Q Consensus 168 ~~~~~~~-~~~~~~q~~~ 184 (316)
++++..- +++..-|...
T Consensus 250 ~l~~~~i~pDlvtDQTSa 267 (556)
T PRK05414 250 ELVRRGIRPDLVTDQTSA 267 (556)
T ss_pred HHHHcCCCCCccCcCccc
Confidence 8887632 2333446654
No 37
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=67.46 E-value=73 Score=32.42 Aligned_cols=150 Identities=19% Similarity=0.147 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHcCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHHHhhCCCccc
Q 037896 28 RETTQLAVHTALKMGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTLKNLGMEYVD 107 (316)
Q Consensus 28 ~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~Lg~d~iD 107 (316)
-+.+.++.+.|-|.|++.+- .|. |+--+..-+. +-++-|+..|...+-..++ .+++..+--....+|
T Consensus 42 gEIaIRvFRa~tEL~~~tvA---iYs-eqD~~sMHRq-------KADEaY~iGk~l~PV~AYL--~ideii~iak~~~vd 108 (1176)
T KOG0369|consen 42 GEIAIRVFRAATELSMRTVA---IYS-EQDRLSMHRQ-------KADEAYLIGKGLPPVGAYL--AIDEIISIAKKHNVD 108 (1176)
T ss_pred CcchhHHHHHHhhhcceEEE---EEe-ccchhhhhhh-------ccccceecccCCCchhhhh--hHHHHHHHHHHcCCC
Confidence 35678899999999999874 664 3332333332 6788999999854433222 333333333334455
Q ss_pred eEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHH------HHHHHhcCCCCcccc
Q 037896 108 MYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKI------QRLLDFASVPPATNQ 181 (316)
Q Consensus 108 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~------~~~~~~~~~~~~~~q 181 (316)
. +|--... ..|--+.-+...+.| |++||=|.--.+.+ ..+.-.++++ ++.
T Consensus 109 a--vHPGYGF-------------------LSErsdFA~av~~AG-i~fiGPspeVi~~mGDKv~AR~~Ai~agVp--vVP 164 (1176)
T KOG0369|consen 109 A--VHPGYGF-------------------LSERSDFAQAVQDAG-IRFIGPSPEVIDSMGDKVAARAIAIEAGVP--VVP 164 (1176)
T ss_pred e--ecCCccc-------------------cccchHHHHHHHhcC-ceEeCCCHHHHHHhhhHHHHHHHHHHcCCC--ccC
Confidence 5 4521100 111223334444555 68999775433322 1112223332 222
Q ss_pred cccCcccccHHHHHHHHhcCCeEEEeccCCCCC
Q 037896 182 VEMHPMWRQSKLREICADNKIHVSAYSPLGGPG 214 (316)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G 214 (316)
-.-.|...-++..++|+++|.+|+.-..++|+|
T Consensus 165 GTpgPitt~~EA~eF~k~yG~PvI~KAAyGGGG 197 (1176)
T KOG0369|consen 165 GTPGPITTVEEALEFVKEYGLPVIIKAAYGGGG 197 (1176)
T ss_pred CCCCCcccHHHHHHHHHhcCCcEEEeecccCCC
Confidence 233344444789999999999999999998855
No 38
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=66.16 E-value=41 Score=30.37 Aligned_cols=118 Identities=10% Similarity=0.078 Sum_probs=74.1
Q ss_pred HHHHHHHHH--HcCCeeEEEeccccHHHHHHHHHhcCCCC------cccccccCcccccHHHHHHHHhcCCeEEEeccCC
Q 037896 140 TWAGMEKCL--DMGLCRGIGVSNFSSTKIQRLLDFASVPP------ATNQVEMHPMWRQSKLREICADNKIHVSAYSPLG 211 (316)
Q Consensus 140 ~~~~L~~l~--~~G~ir~iGvS~~~~~~~~~~~~~~~~~~------~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 211 (316)
..+.++.|. ...++-++-=.+-+.+...++.+.....+ ..+-+-|---++++.+.+.+.+-++-++.-++-.
T Consensus 145 ~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nS 224 (294)
T COG0761 145 SVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNS 224 (294)
T ss_pred cHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCC
Confidence 344445553 22354444444555555555444432222 2222223223455678888999888887755544
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHhCC------CHHHHHHHHhhcCC-CEEEeCCCCHHHHHHhh
Q 037896 212 GPGNSWGSTAVVESPVIKSIALKHKA------TPAQVALKWGLTKG-ASVIVKSFNEERMRENM 268 (316)
Q Consensus 212 ~~G~~~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~-~~~ivg~~~~~~l~enl 268 (316)
+ ...+|.++|+++|. ++.++=..|+.... +.+-.|+|+|+.+-+++
T Consensus 225 S-----------Ns~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 225 S-----------NSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred c-----------cHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHH
Confidence 3 24689999999986 56788888988866 77889999999877654
No 39
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=64.77 E-value=1.2e+02 Score=27.97 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=55.8
Q ss_pred CChhHHHHHHHHHHHcCCCEEecCCCCCChHHH----HHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHHHhh
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTAKIYGSEPAL----GNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTLKNL 101 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~l----G~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~L 101 (316)
.+.++...+++.+.+.|+..|-- .|.|..+ -+.++...+.+ ...++.|+|-.. .+. ..-+.|...
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~---tGGEPllr~dl~~li~~i~~~~--~l~~i~itTNG~-----ll~-~~~~~L~~a 113 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRL---TGGEPLVRRGCDQLVARLGKLP--GLEELSLTTNGS-----RLA-RFAAELADA 113 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---ECcCCCccccHHHHHHHHHhCC--CCceEEEEeChh-----HHH-HHHHHHHHc
Confidence 45678888898889999988853 3544442 23333221111 122566666532 222 344567777
Q ss_pred CCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCC
Q 037896 102 GMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGL 152 (316)
Q Consensus 102 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ 152 (316)
|++++-+ -|+..+.... +.......++.+++.++.+++.|.
T Consensus 114 Gl~~v~I-SlDs~~~e~~---------~~i~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 114 GLKRLNI-SLDTLRPELF---------AALTRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred CCCeEEE-EeccCCHHHh---------hhhcCCCCHHHHHHHHHHHHHcCC
Confidence 8776653 3443321100 000000236678888888887764
No 40
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=64.00 E-value=1.2e+02 Score=29.70 Aligned_cols=126 Identities=18% Similarity=0.192 Sum_probs=86.0
Q ss_pred HHHHHHHHcCCCEEe--cCCCC---C-------ChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHH--------
Q 037896 33 LAVHTALKMGYRHFD--TAKIY---G-------SEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPIS-------- 92 (316)
Q Consensus 33 ~~l~~A~~~Gi~~~D--TA~~Y---g-------sE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~-------- 92 (316)
+-.++.-..|+..+= ||-+| | +.+.+..+-++.+. +. -+.++||++-++.....+-..
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~-~~-L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 184 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFG-GS-LKGKWVLTAGLGGMGGAQPLAVTMNGGVS 184 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcC-CC-CceeEEEEeCCCccccccHHHHHHcCceE
Confidence 456667788887653 55444 2 34555666565542 32 588999999998776522111
Q ss_pred -----HHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHH
Q 037896 93 -----ALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQ 167 (316)
Q Consensus 93 -----~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~ 167 (316)
.-...-+|+.+.|+|.+. .+.++.++..++.+++|+..+||+-..-.+.+.
T Consensus 185 i~vEvd~~ri~kR~~~gyld~~~------------------------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~ 240 (545)
T TIGR01228 185 IAVEVDESRIDKRLETKYCDEQT------------------------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLP 240 (545)
T ss_pred EEEEECHHHHHHHHhcCcceeEc------------------------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHH
Confidence 123445889999988742 237889999999999999999999999888888
Q ss_pred HHHHhcC-CCCccccccc
Q 037896 168 RLLDFAS-VPPATNQVEM 184 (316)
Q Consensus 168 ~~~~~~~-~~~~~~q~~~ 184 (316)
++++..- +++..-|...
T Consensus 241 ~l~~r~i~pDlvtDQTSa 258 (545)
T TIGR01228 241 ELLKRGVVPDVVTDQTSA 258 (545)
T ss_pred HHHHcCCCCCCcCCCCcc
Confidence 8887631 3333446655
No 41
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=63.81 E-value=1.1e+02 Score=28.51 Aligned_cols=150 Identities=11% Similarity=0.049 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHH
Q 037896 89 DPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQR 168 (316)
Q Consensus 89 ~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~ 168 (316)
.-+-.+-+.|.++|+++|++-..-+|... |.+ .+.+++++.+. +...++..++. .+...++.
T Consensus 68 e~Ki~ia~~L~~~GV~~IEvGs~vspk~v-Pqm-------------ad~~ev~~~i~---~~~~~~~~~l~-~n~~die~ 129 (347)
T PLN02746 68 SVKVELIQRLVSSGLPVVEATSFVSPKWV-PQL-------------ADAKDVMAAVR---NLEGARFPVLT-PNLKGFEA 129 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCcccc-ccc-------------ccHHHHHHHHH---hccCCceeEEc-CCHHHHHH
Confidence 34566777899999999998644343211 110 11234445543 33335555554 47788888
Q ss_pred HHHhcCCCCcccccccCcccc--------c------HHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHH
Q 037896 169 LLDFASVPPATNQVEMHPMWR--------Q------SKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALK 234 (316)
Q Consensus 169 ~~~~~~~~~~~~q~~~~~~~~--------~------~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~ 234 (316)
+++..- +...+-+..|..+. + .+++++|+++|+.+.++-...- |..+. .....+.+.+++++
T Consensus 130 A~~~g~-~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~f-g~p~~--~r~~~~~l~~~~~~ 205 (347)
T PLN02746 130 AIAAGA-KEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVV-GCPIE--GPVPPSKVAYVAKE 205 (347)
T ss_pred HHHcCc-CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeee-cCCcc--CCCCHHHHHHHHHH
Confidence 887532 11111111221111 1 3689999999998864432221 11111 01223444444443
Q ss_pred hCCCHHHHHHHHhhcCC--CEEE---eCCCCHHHHHHhhcccC
Q 037896 235 HKATPAQVALKWGLTKG--ASVI---VKSFNEERMRENMASFN 272 (316)
Q Consensus 235 ~~~s~~q~al~~~l~~~--~~~i---vg~~~~~~l~enl~a~~ 272 (316)
. ...| .+.| +|.-+|.++.+.+..+.
T Consensus 206 ~------------~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~ 236 (347)
T PLN02746 206 L------------YDMGCYEISLGDTIGVGTPGTVVPMLEAVM 236 (347)
T ss_pred H------------HHcCCCEEEecCCcCCcCHHHHHHHHHHHH
Confidence 2 1223 1222 57888888888887663
No 42
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=63.37 E-value=87 Score=30.70 Aligned_cols=127 Identities=17% Similarity=0.174 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCCCEEe--cCCCC---CC-------hHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHH-------
Q 037896 32 QLAVHTALKMGYRHFD--TAKIY---GS-------EPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPIS------- 92 (316)
Q Consensus 32 ~~~l~~A~~~Gi~~~D--TA~~Y---gs-------E~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~------- 92 (316)
.+-.++....|+..+= ||-+| |+ ...+..+-++.+. +. -+.++||++-++.....+-..
T Consensus 105 ~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g-~~-L~Gk~~lTaGLGGMgGAQplA~~m~g~v 182 (546)
T PF01175_consen 105 WEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFG-GD-LAGKLFLTAGLGGMGGAQPLAATMAGGV 182 (546)
T ss_dssp HHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHST-TS--TT-EEEEE--STTCCHHHHHHHHTT-E
T ss_pred HHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcC-CC-CcceEEEEecccccccchHHHHHhcCce
Confidence 4566777888998663 55555 22 3445555555443 33 688999999998877622211
Q ss_pred ------HHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHH
Q 037896 93 ------ALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKI 166 (316)
Q Consensus 93 ------~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~ 166 (316)
.-...-+|+.+.|+|.+. .+.++.++..++.+++|+..+||+-..-.+.+
T Consensus 183 ~l~vEvd~~ri~kR~~~g~ld~~~------------------------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~ 238 (546)
T PF01175_consen 183 GLIVEVDPSRIEKRLEQGYLDEVT------------------------DDLDEALARAKEARAKKEPLSIGLLGNAADLW 238 (546)
T ss_dssp EEEEES-HHHHHHHHHTTSSSEEE------------------------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHH
T ss_pred EEEEEECHHHHHHHHhCCCeeEEc------------------------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHH
Confidence 124556888899999743 23788999999999999999999999888888
Q ss_pred HHHHHhcC-CCCccccccc
Q 037896 167 QRLLDFAS-VPPATNQVEM 184 (316)
Q Consensus 167 ~~~~~~~~-~~~~~~q~~~ 184 (316)
+++++..- +++..-|...
T Consensus 239 ~~l~~~~i~pDl~tDQTS~ 257 (546)
T PF01175_consen 239 EELVERGIIPDLVTDQTSA 257 (546)
T ss_dssp HHHHHTT---SEE---SST
T ss_pred HHHHHcCCCCCcccCCCcc
Confidence 88887632 2333346654
No 43
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=62.49 E-value=54 Score=30.23 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=64.7
Q ss_pred HHHHhhCCCccceEeeec-CCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCee-EEEeccc---cHHHHHHHH
Q 037896 96 QTLKNLGMEYVDMYLVHW-PVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCR-GIGVSNF---SSTKIQRLL 170 (316)
Q Consensus 96 ~sL~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~---~~~~~~~~~ 170 (316)
+.-+.+|.|+||+-+.-. |+.. + ...++....++...+.=.+- .|..|.. +++.+.+++
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~------------d----~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaal 146 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGK------------D----KSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVA 146 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccc------------c----chHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHH
Confidence 444688888888854322 2110 0 12333333444433322222 2665533 688899999
Q ss_pred HhcCC-CCcccccccCcccccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHH
Q 037896 171 DFASV-PPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQ 241 (316)
Q Consensus 171 ~~~~~-~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q 241 (316)
+.++- ++.++-+.. .+-+.+.+.|+++|..|++.+|.. +-....+...+.++|+++.+
T Consensus 147 e~~~g~~pLInSat~---en~~~i~~lA~~y~~~Vva~s~~D----------ln~ak~L~~~l~~~Gi~~ed 205 (319)
T PRK04452 147 EAAEGERCLLGSAEE---DNYKKIAAAAMAYGHAVIAWSPLD----------INLAKQLNILLTELGVPRER 205 (319)
T ss_pred HHhCCCCCEEEECCH---HHHHHHHHHHHHhCCeEEEEcHHH----------HHHHHHHHHHHHHcCCCHHH
Confidence 88763 343333221 112689999999999999987652 22234455555566665544
No 44
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=60.07 E-value=1.4e+02 Score=27.18 Aligned_cols=214 Identities=14% Similarity=0.067 Sum_probs=116.4
Q ss_pred ChhHHHHHHHHHHHcCCCEEecCCCCC------ChHHHHHHHHhHhh---------cCCCCCCceEEEeccCCCCC----
Q 037896 27 HRETTQLAVHTALKMGYRHFDTAKIYG------SEPALGNALAESIL---------EGTVKRENVFVTSKLWGSDH---- 87 (316)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg------sE~~lG~al~~~~~---------~~~~~R~~~~I~tK~~~~~~---- 87 (316)
.++...++-...+++|-+.++|+ .|. +|+.-.+-++.+++ +.-+-.+...|+.-+++...
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~-TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~ 119 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTA-TYQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALAD 119 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeeh-hhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcCh
Confidence 34555666666789999999987 575 23321111222111 00002333445555544321
Q ss_pred ----------chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEE
Q 037896 88 ----------DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIG 157 (316)
Q Consensus 88 ----------~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iG 157 (316)
+.+.+-...-++.|.-.-+|++.......- ...+.+.+.++++ +|=-.|+
T Consensus 120 Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i-----------------~Ea~Aiv~l~~~~---s~p~wIS 179 (300)
T COG2040 120 EYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNI-----------------TEAEAIVQLVQEF---SKPAWIS 179 (300)
T ss_pred hhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCCh-----------------HHHHHHHHHHHHh---CCceEEE
Confidence 444455566777777777999988764211 3355566666666 7777888
Q ss_pred eccccH------HHHHHHHHhcC-C-CCcccccccCcccccHHHHHHH--HhcCCeEEEeccCCCCCCCCCCCCCCCc-H
Q 037896 158 VSNFSS------TKIQRLLDFAS-V-PPATNQVEMHPMWRQSKLREIC--ADNKIHVSAYSPLGGPGNSWGSTAVVES-P 226 (316)
Q Consensus 158 vS~~~~------~~~~~~~~~~~-~-~~~~~q~~~~~~~~~~~~~~~~--~~~gi~v~~~~pl~~~G~~~~~~~~~~~-~ 226 (316)
++-.+. ..+.++.+... . .+....+++...++-..+++.. ...|+++++|-- . |..+++..-... +
T Consensus 180 fT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN--S-Ge~~d~~~k~w~~p 256 (300)
T COG2040 180 FTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN--S-GEQYDPAGKTWHGP 256 (300)
T ss_pred EEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC--c-ccccCcCCCcCCCC
Confidence 886631 22344444332 2 3455566665555557788887 444888998855 2 444433221000 0
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCCEEEeCC--CCHHHHHHhhccc
Q 037896 227 VIKSIALKHKATPAQVALKWGLTKGASVIVKS--FNEERMRENMASF 271 (316)
Q Consensus 227 ~l~~ia~~~~~s~~q~al~~~l~~~~~~ivg~--~~~~~l~enl~a~ 271 (316)
. . .--+-.++++.|+-. |..+|=|+ +++.|+.+.-+++
T Consensus 257 ~--~----~~~~~~~~a~~w~~~-GA~iiGGCCrt~p~~I~ei~~~~ 296 (300)
T COG2040 257 A--L----SADSYSTLAKSWVEA-GARIIGGCCRTGPAHIAEIAKAL 296 (300)
T ss_pred C--C----chhHHHHHHHHHHhc-ccceeeeccCCChHHHHHHHHHH
Confidence 0 0 001234567777654 55566554 4688887776654
No 45
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=59.93 E-value=99 Score=30.33 Aligned_cols=139 Identities=9% Similarity=0.090 Sum_probs=76.6
Q ss_pred CCCCCCCCCcc---chhhhHhHHHHHHHHHHHHHcCCeeEEEecc----ccHHHHHHHHHhc---C-CCCc-ccccccCc
Q 037896 119 PWTCYPVPKEE---DFEQQLEFEATWAGMEKCLDMGLCRGIGVSN----FSSTKIQRLLDFA---S-VPPA-TNQVEMHP 186 (316)
Q Consensus 119 ~~~~~~~~~~~---~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~----~~~~~~~~~~~~~---~-~~~~-~~q~~~~~ 186 (316)
|..|.++.... .+.. .+.+.+++.++.++++.-++++-++. .+...+.++++.. + ..+. ..+...+.
T Consensus 204 p~~C~FC~~~~~~~~~R~-rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~ 282 (497)
T TIGR02026 204 PFTCNFCSQWKFWRRYRH-RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTD 282 (497)
T ss_pred CCCCCCCCCCCCCceeec-CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEeccccc
Confidence 44456654322 2222 56888999999998876678776653 2344444443321 1 1111 12333333
Q ss_pred ccccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCC----CEEEeCC--CC
Q 037896 187 MWRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQVALKWGLTKG----ASVIVKS--FN 260 (316)
Q Consensus 187 ~~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~----~~~ivg~--~~ 260 (316)
+..++++++..++.|+..+..+.=.+ ..+.++.+.+.+......-+++.+.+.| ...|+|. .+
T Consensus 283 i~~d~ell~~l~~aG~~~v~iGiES~-----------~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et 351 (497)
T TIGR02026 283 IVRDADILHLYRRAGLVHISLGTEAA-----------AQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENET 351 (497)
T ss_pred ccCCHHHHHHHHHhCCcEEEEccccC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCC
Confidence 44457899999999987766544432 1234444433332223334556666665 3456663 46
Q ss_pred HHHHHHhhc
Q 037896 261 EERMRENMA 269 (316)
Q Consensus 261 ~~~l~enl~ 269 (316)
.+.+++.++
T Consensus 352 ~e~~~~t~~ 360 (497)
T TIGR02026 352 DETFEETYR 360 (497)
T ss_pred HHHHHHHHH
Confidence 677776665
No 46
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.29 E-value=1.7e+02 Score=28.20 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCCEEe--------cCCCCC-------ChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHH
Q 037896 31 TQLAVHTALKMGYRHFD--------TAKIYG-------SEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALN 95 (316)
Q Consensus 31 ~~~~l~~A~~~Gi~~~D--------TA~~Yg-------sE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~ 95 (316)
..+++++|+|+|---+- |...|. .++..+.++.-.- .+..+.-+|.. ......+.+.++
T Consensus 184 MaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~-----ag~~iLqst~d-~~egaa~L~~l~ 257 (579)
T COG3653 184 MAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVAR-----AGGRILQSTHD-RDEGAAALEALL 257 (579)
T ss_pred HHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHH-----hcCceeEeecc-ccchHHHHHHHH
Confidence 45789999999876665 667775 3566666654320 23344444432 233356677777
Q ss_pred HHHHhhCC-CccceEeeecC
Q 037896 96 QTLKNLGM-EYVDMYLVHWP 114 (316)
Q Consensus 96 ~sL~~Lg~-d~iDl~~lH~p 114 (316)
++.+.-+. ..+-+.+.|.-
T Consensus 258 ~a~ri~~R~~~vr~v~s~~a 277 (579)
T COG3653 258 EASRIGNRRKGVRMVMSHSA 277 (579)
T ss_pred HHHHhcCcccCceEEEeccc
Confidence 77777743 35888888865
No 47
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=58.24 E-value=1e+02 Score=29.55 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHhhCCCccceEeeec-CCCCCCCCCCCCCCccchhhhHhHHHHHHHH-HHHHHcCCeeEEEeccccH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHW-PVRLKPWTCYPVPKEEDFEQQLEFEATWAGM-EKCLDMGLCRGIGVSNFSS 163 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~l~~~G~ir~iGvS~~~~ 163 (316)
+.+.+.+++.+ .|+.|+|.+|.+-. |.... ..... ++....+.....+.++.. +.|.+.|. +++|+|||..
T Consensus 204 ~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~-~~~~~--~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 204 ESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKF-AQRKI--KGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred HHHHHHHHHHH-hCCCCEEEEeeeecCCCchh-hhhcc--cCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 45555555544 47799999996543 32211 00000 011011101223445444 44555676 8999999986
No 48
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=57.23 E-value=5.7 Score=38.23 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCC---CEEEeC
Q 037896 191 SKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQVALKWGLTKG---ASVIVK 257 (316)
Q Consensus 191 ~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~---~~~ivg 257 (316)
..-+.+++++||+++.+.-+-+ .++....--.+|-.||+|...-.|+|+++.. .+.++|
T Consensus 80 NpEi~~A~e~~ipi~~r~e~La--------elm~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 80 NPEIVAALERGIPVISRAEMLA--------ELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred CHHHHHHHHcCCCeEcHHHHHH--------HHHhCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 3556666666666665544432 1111112223445689999999999999864 566666
No 49
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=56.89 E-value=70 Score=30.36 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=45.6
Q ss_pred CccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccc
Q 037896 104 EYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVE 183 (316)
Q Consensus 104 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~ 183 (316)
|-+|.+.||.-- ..+.++.++++|. ..|+-+-...-+..+....+ .
T Consensus 152 dGVDfmTiH~Gi------------------------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~--------~ 197 (423)
T TIGR00190 152 DGVDFMTIHAGV------------------------LLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH--------K 197 (423)
T ss_pred hCCCEEEEccch------------------------hHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC--------C
Confidence 668999999641 4688899999995 47777776665555554422 1
Q ss_pred cCccccc-HHHHHHHHhcCCeE
Q 037896 184 MHPMWRQ-SKLREICADNKIHV 204 (316)
Q Consensus 184 ~~~~~~~-~~~~~~~~~~gi~v 204 (316)
=||++.. +.+++.|+++++.+
T Consensus 198 ENPlye~fD~lLeI~~~yDVtl 219 (423)
T TIGR00190 198 ENPLYKNFDYILEIAKEYDVTL 219 (423)
T ss_pred cCchHHHHHHHHHHHHHhCeee
Confidence 3455444 56788888888777
No 50
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=56.81 E-value=1.3e+02 Score=27.79 Aligned_cols=139 Identities=14% Similarity=0.101 Sum_probs=72.7
Q ss_pred hHHHHHHHHHH-HcCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHH------------H
Q 037896 29 ETTQLAVHTAL-KMGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISAL------------N 95 (316)
Q Consensus 29 ~~~~~~l~~A~-~~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~------------~ 95 (316)
.+|.+++...+ +.+.+.|=|=..-=.-.-+++.++..++.+. =+++|+|=.... +.+.+++ +
T Consensus 43 ~~A~~i~~~ml~~~~~~ifL~~tg~mvsaGlr~ii~~Li~~~~---VD~iVtTganie--hD~~~~lg~~~y~G~~~~dd 117 (316)
T PRK02301 43 AEAVDIYEEMLADDDVTKFFGLAGAMVPAGMRGIVSDLIRDGH---IDVLVTTGANLT--HDVIEAIGGHHHHGTAHAHD 117 (316)
T ss_pred HHHHHHHHHHHhCCCCeEEEEcccchhHHHHHHHHHHHHHcCC---eeEEEcCCCchH--HHHHHHcCCCeeccCCCCCH
Confidence 46778888887 6677755432111124557777877644443 356666644321 1222222 5
Q ss_pred HHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHH-HHHHHHHHcCCeeEEEeccccHHHHHHHHHhcC
Q 037896 96 QTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATW-AGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFAS 174 (316)
Q Consensus 96 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~ 174 (316)
.-|++.|+++|==+++.. +++ ...++.+ +.++++.+++ .|++..+...+-.
T Consensus 118 ~~Lr~~ginRIgd~~ip~---------------e~y---~~~E~~i~~il~~~~~~~--------~~s~~e~i~~lGk-- 169 (316)
T PRK02301 118 EELRDEGIDRIYDVYLPQ---------------EHF---ADFEEFLQDVFPGLEEEG--------TVSIRDLLTEIGR-- 169 (316)
T ss_pred HHHHHcCCCccceeCCCh---------------HHH---HHHHHHHHHHHHhhhhcC--------CcCHHHHHHHHHh--
Confidence 566677766654444432 111 1233332 3455554432 2455444332211
Q ss_pred CCCcccccccCcccccHHHHHHHHhcCCeEEEeccCC
Q 037896 175 VPPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLG 211 (316)
Q Consensus 175 ~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 211 (316)
. ++.+..++.+|.++||+|++=....
T Consensus 170 ~-----------i~~e~Sil~~Ay~~~VPIf~Pa~~D 195 (316)
T PRK02301 170 D-----------LDDDSGILAAAYECDVPVYCPAIQD 195 (316)
T ss_pred h-----------ccCCCcHHHHHHHcCCCEECCCcch
Confidence 1 1224689999999999998754443
No 51
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=56.43 E-value=83 Score=23.58 Aligned_cols=86 Identities=12% Similarity=0.117 Sum_probs=56.3
Q ss_pred HHHHHHHc-CCeeEEEeccccHHHHHHHHHhcCCC-------------CcccccccCcccccHHHHHHHHhcCCeEEEec
Q 037896 143 GMEKCLDM-GLCRGIGVSNFSSTKIQRLLDFASVP-------------PATNQVEMHPMWRQSKLREICADNKIHVSAYS 208 (316)
Q Consensus 143 ~L~~l~~~-G~ir~iGvS~~~~~~~~~~~~~~~~~-------------~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~ 208 (316)
.+..+.+. ..++-+|+++-+++....+.+..+.+ ++++-+ ..+-....+++..|-++|+.|+.=+
T Consensus 15 ~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I-~tp~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 15 HLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVII-ATPPSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEE-ESSGGGHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEE-ecCCcchHHHHHHHHHcCCEEEEEc
Confidence 35555555 67788899998888777665554422 222211 1111122588999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcHHHHHHHHHhCC
Q 037896 209 PLGGPGNSWGSTAVVESPVIKSIALKHKA 237 (316)
Q Consensus 209 pl~~~G~~~~~~~~~~~~~l~~ia~~~~~ 237 (316)
|++. +.....++.+.+++.|+
T Consensus 94 P~~~--------~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 94 PLAL--------TLEEAEELVEAAKEKGV 114 (120)
T ss_dssp SSSS--------SHHHHHHHHHHHHHHTS
T ss_pred CCcC--------CHHHHHHHHHHHHHhCC
Confidence 9985 34445677777777765
No 52
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=55.98 E-value=32 Score=31.11 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=65.9
Q ss_pred HHHHHHc--CCeeEEEeccccHHHHHHHHHhcC--CCC----cccccccCcccccHHHHHHHHhcCCeEEEeccCCCCCC
Q 037896 144 MEKCLDM--GLCRGIGVSNFSSTKIQRLLDFAS--VPP----ATNQVEMHPMWRQSKLREICADNKIHVSAYSPLGGPGN 215 (316)
Q Consensus 144 L~~l~~~--G~ir~iGvS~~~~~~~~~~~~~~~--~~~----~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~ 215 (316)
++.+... +++-.+.=++++.+...++.+... .+- ..+.+-+--..|++.+.++|++-++-++.-++-.
T Consensus 146 ~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~S---- 221 (281)
T PF02401_consen 146 VEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNS---- 221 (281)
T ss_dssp HHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-----
T ss_pred hcccCCCCCCeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCC----
Confidence 3444433 477778878888877666655432 111 1111111111234678888888887776522221
Q ss_pred CCCCCCCCCcHHHHHHHHHhCC------CHHHHHHHHhhcCC-CEEEeCCCCHHHHHHhh
Q 037896 216 SWGSTAVVESPVIKSIALKHKA------TPAQVALKWGLTKG-ASVIVKSFNEERMRENM 268 (316)
Q Consensus 216 ~~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~-~~~ivg~~~~~~l~enl 268 (316)
-.-..|.++|++++. ++.++...|+-... +.+..|+|+|+.+-+.+
T Consensus 222 -------sNT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 222 -------SNTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp -------HHHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred -------ccHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 123689999999874 67899999998877 88889999999887654
No 53
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=55.79 E-value=72 Score=28.44 Aligned_cols=77 Identities=18% Similarity=0.119 Sum_probs=51.7
Q ss_pred CChh-HHHHHHHHHHHcCCCEEecCCCCCC-----h--HHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHH
Q 037896 26 NHRE-TTQLAVHTALKMGYRHFDTAKIYGS-----E--PALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQT 97 (316)
Q Consensus 26 ~~~~-~~~~~l~~A~~~Gi~~~DTA~~Ygs-----E--~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~s 97 (316)
.+++ +...+.+.|.++|..|+=|+..|+. | +++-++++++ + ...++-|=.-.+..+.+...+-++.-
T Consensus 143 L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~--~~~~vgIKAsGGIrt~~~A~~~i~ag 217 (257)
T PRK05283 143 LKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---G--VAKTVGFKPAGGVRTAEDAAQYLALA 217 (257)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---c--cCCCeeEEccCCCCCHHHHHHHHHHH
Confidence 3445 4778888999999999999999962 2 3344444431 1 12333333333555668888889999
Q ss_pred HHhhCCCccc
Q 037896 98 LKNLGMEYVD 107 (316)
Q Consensus 98 L~~Lg~d~iD 107 (316)
-+.||.++++
T Consensus 218 ~~~lg~~~~~ 227 (257)
T PRK05283 218 DEILGADWAD 227 (257)
T ss_pred HHHhChhhcC
Confidence 9999999865
No 54
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=55.71 E-value=87 Score=27.90 Aligned_cols=100 Identities=15% Similarity=0.039 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQ 167 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~ 167 (316)
+.+.+...+. ..-|-+.||+=.= . .+. ...+.+...++.+++.-.+ -+.|-+++++.++
T Consensus 25 ~~i~~~A~~~-~~~GAdiIDVg~~----~-~~~--------------eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~e 83 (261)
T PRK07535 25 AFIQKLALKQ-AEAGADYLDVNAG----T-AVE--------------EEPETMEWLVETVQEVVDV-PLCIDSPNPAAIE 83 (261)
T ss_pred HHHHHHHHHH-HHCCCCEEEECCC----C-Cch--------------hHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHH
Confidence 3444444443 3678899998421 1 110 2244455556666554222 4899999999999
Q ss_pred HHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEecc
Q 037896 168 RLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYSP 209 (316)
Q Consensus 168 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~p 209 (316)
.+++...-.+.+|-+.... .+.+.+++.++++|..++.+.-
T Consensus 84 aaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 84 AGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred HHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 9998754334444333211 1236799999999999998653
No 55
>PRK07534 methionine synthase I; Validated
Probab=55.54 E-value=1.8e+02 Score=27.07 Aligned_cols=207 Identities=14% Similarity=0.072 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHHHcCCCEEecCCCCC-ChHH-------------HHHHHH--hHhhcCCCCCCceEEEeccCCCCC----
Q 037896 28 RETTQLAVHTALKMGYRHFDTAKIYG-SEPA-------------LGNALA--ESILEGTVKRENVFVTSKLWGSDH---- 87 (316)
Q Consensus 28 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg-sE~~-------------lG~al~--~~~~~~~~~R~~~~I~tK~~~~~~---- 87 (316)
++...++=+..+++|-+.+=|.. |+ +-.. .-.+++ +..... ...+++|+.-+++...
T Consensus 44 Pe~V~~vH~~Yl~AGAdiI~TnT-y~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~--~~~~~~VaGsIGP~g~~l~~ 120 (336)
T PRK07534 44 PDNITALHQGFVDAGSDIILTNS-FGGTAARLKLHDAQDRVHELNRAAAEIAREVADK--AGRKVIVAGSVGPTGEIMEP 120 (336)
T ss_pred HHHHHHHHHHHHHhcCCEEEecC-cccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh--cCCccEEEEecCCCccccCC
Confidence 34444444445799999998664 54 3111 111111 110001 1235788888865432
Q ss_pred ------chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccc
Q 037896 88 ------DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNF 161 (316)
Q Consensus 88 ------~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~ 161 (316)
+.+.+.....++.|--.-+|++++... ....|+..+++.+++.|+=-.+.++..
T Consensus 121 ~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~--------------------p~l~E~~a~~~~~~~~~~Pv~vSft~~ 180 (336)
T PRK07534 121 MGALTHALAVEAFHEQAEGLKAGGADVLWVETI--------------------SAPEEIRAAAEAAKLAGMPWCGTMSFD 180 (336)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc--------------------CCHHHHHHHHHHHHHcCCeEEEEEEEC
Confidence 456666777777774455999999864 225566666666666676555665542
Q ss_pred c---------HHHHHHHHHhcCCCCcccccccCc-cccc-HHHHHHHHhc-CCeEEEeccCCCCCC-CCCCCCCCCcHHH
Q 037896 162 S---------STKIQRLLDFASVPPATNQVEMHP-MWRQ-SKLREICADN-KIHVSAYSPLGGPGN-SWGSTAVVESPVI 228 (316)
Q Consensus 162 ~---------~~~~~~~~~~~~~~~~~~q~~~~~-~~~~-~~~~~~~~~~-gi~v~~~~pl~~~G~-~~~~~~~~~~~~l 228 (316)
. ...+..++...+..++++-+++.. ...- ..++...... ++.+++|- =+ |. .+......
T Consensus 181 ~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyP-Na--G~p~~~~~~~~----- 252 (336)
T PRK07534 181 TAGRTMMGLTPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKG-NA--GIPKYVDGHIH----- 252 (336)
T ss_pred CCCeeCCCCcHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEc-CC--CCcccCCCccc-----
Confidence 2 223333333333345777777764 2211 3344444433 56666663 33 32 11111110
Q ss_pred HHHHHHhCCC---HHHHHHHHhhcCCCEEEeCC--CCHHHHHHhhcccC
Q 037896 229 KSIALKHKAT---PAQVALKWGLTKGASVIVKS--FNEERMRENMASFN 272 (316)
Q Consensus 229 ~~ia~~~~~s---~~q~al~~~l~~~~~~ivg~--~~~~~l~enl~a~~ 272 (316)
+..+ .++.+-.| ...++.+|=|+ ++|+||++..+.++
T Consensus 253 ------~~~~p~~~~~~~~~~-~~~Ga~iIGGCCGTtP~hI~~la~~l~ 294 (336)
T PRK07534 253 ------YDGTPELMAEYAVLA-RDAGARIIGGCCGTMPEHLAAMRAALD 294 (336)
T ss_pred ------cCCCHHHHHHHHHHH-HHcCCcEEeeecCCCHHHHHHHHHHHc
Confidence 1112 34556667 44577777775 68999998877664
No 56
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=55.43 E-value=89 Score=26.92 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=47.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEecCCCCC-ChHHHH--HHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHHHhhC
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTAKIYG-SEPALG--NALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTLKNLG 102 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-sE~~lG--~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~Lg 102 (316)
.+.++...+.+.+.++|..|+=|+..|+ .-..++ +.+++. .++++=|-.-.+..+.+...+.++.--.|+|
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~------v~~~v~IKaaGGirt~~~a~~~i~aGa~riG 202 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNT------VGDTIGVKASGGVRTAEDAIAMIEAGASRIG 202 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHH------hccCCeEEEeCCCCCHHHHHHHHHHhhHHhC
Confidence 4456777888999999999999999986 211122 223332 1222222222244455778888888889999
Q ss_pred CCc
Q 037896 103 MEY 105 (316)
Q Consensus 103 ~d~ 105 (316)
+++
T Consensus 203 ts~ 205 (211)
T TIGR00126 203 ASA 205 (211)
T ss_pred cch
Confidence 875
No 57
>PRK07328 histidinol-phosphatase; Provisional
Probab=54.58 E-value=1.6e+02 Score=26.19 Aligned_cols=121 Identities=17% Similarity=0.073 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCCCEEecCCCCCC---------------hHHHHHHHHhH--hhcCCCCCCceEEEeccCCCCCchHHH
Q 037896 30 TTQLAVHTALKMGYRHFDTAKIYGS---------------EPALGNALAES--ILEGTVKRENVFVTSKLWGSDHDDPIS 92 (316)
Q Consensus 30 ~~~~~l~~A~~~Gi~~~DTA~~Ygs---------------E~~lG~al~~~--~~~~~~~R~~~~I~tK~~~~~~~~i~~ 92 (316)
...+++++|.+.|+..+=.+++... ..-+-..++.. .++.. .+=+|.+--=+.... ....
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y-~~i~Il~GiE~~~~~--~~~~ 95 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARF-PDLYVRLGIEADYHP--GTEE 95 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHc-CCCeEEEEEEecccC--CcHH
Confidence 4678999999999998755544221 01111111111 00010 122344443333332 3345
Q ss_pred HHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhh---hHhHHHHHHHHHHHHHcCCeeEEE
Q 037896 93 ALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQ---QLEFEATWAGMEKCLDMGLCRGIG 157 (316)
Q Consensus 93 ~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~l~~~G~ir~iG 157 (316)
.+++.|++-..||+ +.-+|.....+-..... ...+.. ....+.-++.+.++.+.|.+.-+|
T Consensus 96 ~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~---~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlg 159 (269)
T PRK07328 96 FLERLLEAYPFDYV-IGSVHYLGAWGFDNPDF---VAEYEERDLDELYRRYFALVEQAARSGLFDIIG 159 (269)
T ss_pred HHHHHHHhCCCCeE-EEEEeecCCcCCCChhH---HHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 56667777777776 77789864321100000 000000 012233444577788888877666
No 58
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=53.84 E-value=67 Score=28.14 Aligned_cols=97 Identities=11% Similarity=0.146 Sum_probs=60.1
Q ss_pred HHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcC-CeeEEEeccccHHHHHHHH
Q 037896 92 SALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMG-LCRGIGVSNFSSTKIQRLL 170 (316)
Q Consensus 92 ~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvS~~~~~~~~~~~ 170 (316)
..+-+.|..+|+++|.+-.--.+... | ...+.++.++.+.+.+ .++...++......++.+.
T Consensus 22 ~~i~~~L~~~GV~~IEvg~~~~~~~~-p----------------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~ 84 (265)
T cd03174 22 LEIAEALDEAGVDSIEVGSGASPKAV-P----------------QMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERAL 84 (265)
T ss_pred HHHHHHHHHcCCCEEEeccCcCcccc-c----------------cCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHH
Confidence 44445578899998888655433111 1 1234678888888888 6777677766566666666
Q ss_pred HhcCCCCcccccccCccc--------c--------cHHHHHHHHhcCCeEEEec
Q 037896 171 DFASVPPATNQVEMHPMW--------R--------QSKLREICADNKIHVSAYS 208 (316)
Q Consensus 171 ~~~~~~~~~~q~~~~~~~--------~--------~~~~~~~~~~~gi~v~~~~ 208 (316)
+.. .+.+++.+..-. + -.+.++++++.|+.+...-
T Consensus 85 ~~g---~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 85 EAG---VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hCC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 542 233444333220 1 1467889999999877654
No 59
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=53.69 E-value=1.6e+02 Score=26.03 Aligned_cols=106 Identities=14% Similarity=0.110 Sum_probs=63.9
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQ 167 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~ 167 (316)
+.+.+..++. -.-|-|.||+= .....|.. ..+......+.+...++.+++.-.+ -|.+-+++++.++
T Consensus 24 ~~~~~~a~~~-~~~GAdiIDvG----~~st~p~~-------~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~ 90 (258)
T cd00423 24 DKALEHARRM-VEEGADIIDIG----GESTRPGA-------EPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAE 90 (258)
T ss_pred HHHHHHHHHH-HHCCCCEEEEC----CCcCCCCC-------CcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHH
Confidence 4444444444 36688999983 32221210 0111113345566777777766333 3899999999999
Q ss_pred HHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEeccC
Q 037896 168 RLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYSPL 210 (316)
Q Consensus 168 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 210 (316)
++++.. .+.+|-+ +.....+++++.++++|..++.+..-
T Consensus 91 aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 91 AALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred HHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcC
Confidence 999875 2333322 22222268999999999999987543
No 60
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=53.45 E-value=48 Score=29.13 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=43.0
Q ss_pred CCCCccCccceeccc-c--C-CC---hhHHHH----HHHHHHHcCCCEEecCCCCC------ChHHHHHH---HHhHhhc
Q 037896 9 NCGITIPVLGLGTYS-F--D-NH---RETTQL----AVHTALKMGYRHFDTAKIYG------SEPALGNA---LAESILE 68 (316)
Q Consensus 9 ~tg~~vs~lglG~~~-~--~-~~---~~~~~~----~l~~A~~~Gi~~~DTA~~Yg------sE~~lG~a---l~~~~~~ 68 (316)
.+|+.+|.+||.+.+ | | .+ ++++.+ .+..|.+.|||.|--| .|. ++....++ ++.....
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLA-GYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLA-GYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeec-cceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 689999999998865 3 3 12 234444 4556679999999877 343 33333332 3322111
Q ss_pred CCCCCCceEEEeccC
Q 037896 69 GTVKRENVFVTSKLW 83 (316)
Q Consensus 69 ~~~~R~~~~I~tK~~ 83 (316)
. .+-.|.++--+.
T Consensus 144 A--~~aqV~lAvEiM 156 (287)
T COG3623 144 A--ARAQVMLAVEIM 156 (287)
T ss_pred H--HhhccEEEeeec
Confidence 1 466777777664
No 61
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=53.34 E-value=1.6e+02 Score=26.07 Aligned_cols=102 Identities=14% Similarity=0.189 Sum_probs=61.2
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHc-CCeeEEEeccccHHHH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDM-GLCRGIGVSNFSSTKI 166 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvS~~~~~~~ 166 (316)
+.+.+..++.+ .-|-++||+ +.....|+ .+.+......+.+...++.+++. +. -+.+-+++++.+
T Consensus 23 ~~~~~~a~~~~-~~GA~iIDI----G~~st~p~-------~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi 88 (257)
T TIGR01496 23 DKAVAHAERML-EEGADIIDV----GGESTRPG-------ADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVA 88 (257)
T ss_pred HHHHHHHHHHH-HCCCCEEEE----CCCCCCCC-------CCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHH
Confidence 34444444433 558899999 32111111 01111112344466677777766 54 389999999999
Q ss_pred HHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEec
Q 037896 167 QRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYS 208 (316)
Q Consensus 167 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~ 208 (316)
+.+++. +. ..++-+.. .. .+++++.++++|..++.+.
T Consensus 89 ~~al~~-G~-~iINsis~--~~-~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 89 RAALEA-GA-DIINDVSG--GQ-DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred HHHHHc-CC-CEEEECCC--CC-CchhHHHHHHcCCcEEEEe
Confidence 999987 32 23333322 21 4579999999999999964
No 62
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=52.24 E-value=1.9e+02 Score=26.46 Aligned_cols=141 Identities=16% Similarity=0.095 Sum_probs=72.6
Q ss_pred hHHHHHHHHHH-HcCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHH-----------HH
Q 037896 29 ETTQLAVHTAL-KMGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISAL-----------NQ 96 (316)
Q Consensus 29 ~~~~~~l~~A~-~~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~-----------~~ 96 (316)
.+|.+++...+ +.+.+.|=|=..-=.-.-+|+.++..++++. =+++|+|=... . +.+.+++ +.
T Consensus 31 ~~A~~i~~~m~~~~~~~ifLt~tg~mvsaGlr~ii~~Li~~g~---Vd~ivtTganl-~-hD~~~~~g~~~~g~f~~dd~ 105 (301)
T TIGR00321 31 GEADKIWKEMCFDEEITIFMGYAGNLVPSGMREIIAYLIQHGM---IDALVTTGANL-E-HDLIEALGPTHLGDFAVDDK 105 (301)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeccccchhhHHHHHHHHHHcCC---eeEEEeCCCch-H-HHHHHHcCcccccCCCCChH
Confidence 36777787777 3345554322111134557777777654443 35666664432 1 2233333 56
Q ss_pred HHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHH-HHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCC
Q 037896 97 TLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATW-AGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASV 175 (316)
Q Consensus 97 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~ 175 (316)
.|++.|.++|==+++.. +++ ...++.+ +.++++.++.+ .+++..+...+-. .+
T Consensus 106 ~Lr~~ginRI~dv~ip~---------------e~y---~~~E~~i~~i~~~~~~~~~-------~~s~~e~i~~lGk-~i 159 (301)
T TIGR00321 106 KLREEGINRIGDVFVPN---------------ENF---EVFEEWLVEIFSEMLGEQP-------IITPSEFIDEIGK-RI 159 (301)
T ss_pred HHHHcCCCccceecCCH---------------HHH---HHHHHHHHHHHHHHHhcCC-------CcCHHHHHHHHHh-hc
Confidence 67777776654444432 111 2233333 35555554443 2455444322211 01
Q ss_pred CCcccccccCcccccHHHHHHHHhcCCeEEEeccCC
Q 037896 176 PPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLG 211 (316)
Q Consensus 176 ~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 211 (316)
+ +.+..++.+|.++||+|++=....
T Consensus 160 ---------~--~~e~Sil~~Ayk~~VPIf~Pa~~D 184 (301)
T TIGR00321 160 ---------N--DKRSSIRYAAYKRKIPIFCPALTD 184 (301)
T ss_pred ---------C--CccchHHHHHHHcCCCEECCCchH
Confidence 1 024689999999999998754443
No 63
>PRK07094 biotin synthase; Provisional
Probab=52.05 E-value=1.6e+02 Score=26.89 Aligned_cols=121 Identities=12% Similarity=0.066 Sum_probs=68.5
Q ss_pred HhHHHHHHHHHHHHHcCCeeEEEecc-----ccHHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEecc
Q 037896 135 LEFEATWAGMEKCLDMGLCRGIGVSN-----FSSTKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYSP 209 (316)
Q Consensus 135 ~~~~~~~~~L~~l~~~G~ir~iGvS~-----~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~p 209 (316)
.+.+++++.++.+++.| ++.+.++. +..+.+.++++...-.+. +.+.+++.....+.+...++.|+..+..+.
T Consensus 70 ls~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~gl 147 (323)
T PRK07094 70 LSPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRH 147 (323)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEecc
Confidence 35788888888888877 46665542 244556555544322111 123344444557889999999988766433
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHH--HHHHhhcCC----CEEEeCC--CCHHHHHHhhcc
Q 037896 210 LGGPGNSWGSTAVVESPVIKSIALKHKATPAQV--ALKWGLTKG----ASVIVKS--FNEERMRENMAS 270 (316)
Q Consensus 210 l~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~--al~~~l~~~----~~~ivg~--~~~~~l~enl~a 270 (316)
=.. ..+.+..+.+ +.+..+. +++++...+ ...++|. .+.+++.+.+..
T Consensus 148 Es~-----------~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~ 203 (323)
T PRK07094 148 ETA-----------DKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILF 203 (323)
T ss_pred ccC-----------CHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHH
Confidence 221 1233333432 3344333 466666555 5667774 577777765543
No 64
>PRK13796 GTPase YqeH; Provisional
Probab=51.63 E-value=2.1e+02 Score=26.81 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=73.6
Q ss_pred CChhHHHHHHHHHHHcC---CCEEecCCCCCC-hHHHHHHHHhHhhcCCCCCCceEEEeccCCCCC----chHHHHHHHH
Q 037896 26 NHRETTQLAVHTALKMG---YRHFDTAKIYGS-EPALGNALAESILEGTVKRENVFVTSKLWGSDH----DDPISALNQT 97 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~G---i~~~DTA~~Ygs-E~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~----~~i~~~~~~s 97 (316)
.+.++..++++..-+.- +-.+|..+.-++ ...+.+.. + .+.-++|.+|.--... +.+.+-++..
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~------~--~kpviLViNK~DLl~~~~~~~~i~~~l~~~ 125 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV------G--NNPVLLVGNKADLLPKSVKKNKVKNWLRQE 125 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh------C--CCCEEEEEEchhhCCCccCHHHHHHHHHHH
Confidence 34555666666665555 446786665443 22222222 1 3567889999854332 3455555555
Q ss_pred HHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHH
Q 037896 98 LKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLL 170 (316)
Q Consensus 98 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~ 170 (316)
.+.+|....|++++..-.. ....++++.+.+..+.+.+-.+|.+|.+-..+...+
T Consensus 126 ~k~~g~~~~~v~~vSAk~g------------------~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 126 AKELGLRPVDVVLISAQKG------------------HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HHhcCCCcCcEEEEECCCC------------------CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 6677765557777654321 236778888888777888999999999877654443
No 65
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=50.31 E-value=2.5e+02 Score=27.26 Aligned_cols=117 Identities=10% Similarity=0.022 Sum_probs=60.3
Q ss_pred ecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCC-CCCchHHHHHHHHHHhhCCC----ccceEeeecCCCCCCCC
Q 037896 47 DTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWG-SDHDDPISALNQTLKNLGME----YVDMYLVHWPVRLKPWT 121 (316)
Q Consensus 47 DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~-~~~~~i~~~~~~sL~~Lg~d----~iDl~~lH~p~~~~~~~ 121 (316)
+..-.||.|.-+-++|+...++.+ +.+-++|.|-... .-.+.+..-+++.-++++-+ .+.++.+|.|.....
T Consensus 63 E~d~VfGG~~~L~~~I~~~~~~~~-~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs-- 139 (454)
T cd01973 63 EDSAVFGGAKRVEEGVLVLARRYP-DLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGS-- 139 (454)
T ss_pred CCceEECcHHHHHHHHHHHHHhcC-CCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCC--
Confidence 344567888888888887644431 1234666665422 12255555554443333211 478889998865421
Q ss_pred CCCCCCccchhhhHhHHHHHHHHH-HHHH----cCCeeEEEecc--ccHHHHHHHHHhcCCCC
Q 037896 122 CYPVPKEEDFEQQLEFEATWAGME-KCLD----MGLCRGIGVSN--FSSTKIQRLLDFASVPP 177 (316)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~L~-~l~~----~G~ir~iGvS~--~~~~~~~~~~~~~~~~~ 177 (316)
.+ .-...+++++- .+.. +++|--||-.+ .+.+.+.++++..++++
T Consensus 140 --------~~---~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v 191 (454)
T cd01973 140 --------MV---TGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEA 191 (454)
T ss_pred --------HH---HHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCE
Confidence 11 11222333322 2222 46677776433 23456777777766543
No 66
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=49.89 E-value=48 Score=30.97 Aligned_cols=69 Identities=9% Similarity=-0.041 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCee-EEEeccccHHHHHHHHHhcCCCCcccccccCcc---cccHHHHHHHHhcCCeEEEeccC
Q 037896 140 TWAGMEKCLDMGLCR-GIGVSNFSSTKIQRLLDFASVPPATNQVEMHPM---WRQSKLREICADNKIHVSAYSPL 210 (316)
Q Consensus 140 ~~~~L~~l~~~G~ir-~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~v~~~~pl 210 (316)
-++.+.+|++...+. ..|=|-++...+..++... -++++|...... .+..++.+.|+++|+.++.++..
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~--a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQER--LIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhC--CCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 367788888887665 6777778888888887763 356677665432 22368999999999999876543
No 67
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=49.61 E-value=1.1e+02 Score=29.26 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=48.0
Q ss_pred CccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccc
Q 037896 104 EYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVE 183 (316)
Q Consensus 104 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~ 183 (316)
+-+|.+.||.-- ..+.++.++++|. ..|+-+-.-.-+..+....+ .
T Consensus 155 ~GVDfmTiHcGi------------------------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~--------~ 200 (431)
T PRK13352 155 DGVDFMTIHCGV------------------------TRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN--------K 200 (431)
T ss_pred hCCCEEEEccch------------------------hHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC--------C
Confidence 568999999641 4578899999885 47777777666655554422 2
Q ss_pred cCccccc-HHHHHHHHhcCCeEE
Q 037896 184 MHPMWRQ-SKLREICADNKIHVS 205 (316)
Q Consensus 184 ~~~~~~~-~~~~~~~~~~gi~v~ 205 (316)
=||++.. +.+++.|+++++.+.
T Consensus 201 ENPlye~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 201 ENPLYEHFDYLLEILKEYDVTLS 223 (431)
T ss_pred cCchHHHHHHHHHHHHHhCeeee
Confidence 4555555 678888999888873
No 68
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=49.10 E-value=1.9e+02 Score=25.63 Aligned_cols=70 Identities=14% Similarity=0.056 Sum_probs=47.5
Q ss_pred HhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEecc
Q 037896 135 LEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYSP 209 (316)
Q Consensus 135 ~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~p 209 (316)
...+.+...++.+++.-.+. +.|-+++++.++++++.. ...+|- .+.....+++++.++++|..++.+..
T Consensus 59 ~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G--~~iINd--isg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 59 EELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAG--ADIIND--VSGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhC--CCEEEe--CCCCCCChHHHHHHHHcCCCEEEECC
Confidence 33455555667777663443 899999999999999873 223332 23322226899999999999999543
No 69
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=48.80 E-value=24 Score=23.86 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHhh
Q 037896 227 VIKSIALKHKATPAQVALKWGL 248 (316)
Q Consensus 227 ~l~~ia~~~~~s~~q~al~~~l 248 (316)
.+.+||+++|+++.++|..|+-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 3789999999999999999974
No 70
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=48.43 E-value=2.3e+02 Score=26.28 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=68.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEecCCCCCC---------------------hHHHHHHHHhHhhcCCCCCCceEEEeccCC
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTAKIYGS---------------------EPALGNALAESILEGTVKRENVFVTSKLWG 84 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Ygs---------------------E~~lG~al~~~~~~~~~~R~~~~I~tK~~~ 84 (316)
.+.+...++.+.|-+.|+-+|=|--.+.+ ..++-...+ .-..+.++|-..
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--------~~kPiIlSTGma- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--------KGKPIILSTGMA- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--------cCCCEEEEcccc-
Confidence 56777788999999999999876544431 122222222 233788888553
Q ss_pred CCCchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHH-HHHHHHHHHHc-CCeeEEEecccc
Q 037896 85 SDHDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEA-TWAGMEKCLDM-GLCRGIGVSNFS 162 (316)
Q Consensus 85 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~l~~~-G~ir~iGvS~~~ 162 (316)
..+.+.++++...+ -|. .|+.++|+...+.. +.++ -+.+|..|.+. +. -||+|.|+
T Consensus 158 -~~~ei~~av~~~r~-~g~--~~i~LLhC~s~YPa----------------p~ed~NL~~i~~l~~~Fn~--~vGlSDHT 215 (347)
T COG2089 158 -TIEEIEEAVAILRE-NGN--PDIALLHCTSAYPA----------------PFEDVNLKAIPKLAEAFNA--IVGLSDHT 215 (347)
T ss_pred -cHHHHHHHHHHHHh-cCC--CCeEEEEecCCCCC----------------CHHHhhHHHHHHHHHHhCC--ccccccCc
Confidence 22566666654433 343 49999999755421 1111 23444444443 33 49999999
Q ss_pred HHHHHHHHHh
Q 037896 163 STKIQRLLDF 172 (316)
Q Consensus 163 ~~~~~~~~~~ 172 (316)
...+.-+.+.
T Consensus 216 ~g~~a~l~Av 225 (347)
T COG2089 216 LGILAPLAAV 225 (347)
T ss_pred cchhHHHHHH
Confidence 8755555444
No 71
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=48.00 E-value=1.5e+02 Score=26.88 Aligned_cols=98 Identities=11% Similarity=0.056 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHH
Q 037896 90 PISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRL 169 (316)
Q Consensus 90 i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~ 169 (316)
-+..+-+.|.++|+++|.+-..+.|... |. ..+.++.+..+.+...++...+. .+...++.+
T Consensus 27 ~k~~ia~~L~~~Gv~~IEvgsf~~p~~~-p~----------------~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A 88 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEVASFVSPKWV-PQ----------------MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAA 88 (287)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCcccc-cc----------------cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHH
Confidence 3455677799999999999744444211 11 11234555555554446655554 467778877
Q ss_pred HHhcCCCCcccccccCccc------c--------cHHHHHHHHhcCCeEEE
Q 037896 170 LDFASVPPATNQVEMHPMW------R--------QSKLREICADNKIHVSA 206 (316)
Q Consensus 170 ~~~~~~~~~~~q~~~~~~~------~--------~~~~~~~~~~~gi~v~~ 206 (316)
++.. .+...+-+..|..+ . -.+.+++++++|+.+.+
T Consensus 89 ~~~g-~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 89 LAAG-ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred HHcC-CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 7652 21111111222111 0 13689999999998863
No 72
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=46.78 E-value=1.3e+02 Score=24.64 Aligned_cols=102 Identities=16% Similarity=0.052 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHcC-CCEEecCCCCCC--hHH----------HHHHHHhHhhcC---CCCCCceEEEeccCCCCCchHHH
Q 037896 29 ETTQLAVHTALKMG-YRHFDTAKIYGS--EPA----------LGNALAESILEG---TVKRENVFVTSKLWGSDHDDPIS 92 (316)
Q Consensus 29 ~~~~~~l~~A~~~G-i~~~DTA~~Ygs--E~~----------lG~al~~~~~~~---~~~R~~~~I~tK~~~~~~~~i~~ 92 (316)
++..+.+-.-.+.+ +..+-||+.+++ ++- ++..|++.--.| . ---+++|.+-.- -....
T Consensus 49 ee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg~-g~yDlviflG~~----~yy~s 123 (170)
T COG1880 49 EELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDGN-GNYDLVIFLGSI----YYYLS 123 (170)
T ss_pred HHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCCC-CCcceEEEEecc----HHHHH
Confidence 34444444445555 999999999972 222 333333310001 0 122344444221 23444
Q ss_pred HHHHHHHhh---CCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHH
Q 037896 93 ALNQTLKNL---GMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLD 149 (316)
Q Consensus 93 ~~~~sL~~L---g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 149 (316)
++-.+|+.. .+=.||=++.-+.+.+-|. +..++.++.|++|.+
T Consensus 124 q~Ls~lKhFs~i~tiaId~~Y~pnAd~SFpN--------------l~kde~~~~L~ell~ 169 (170)
T COG1880 124 QVLSGLKHFSNIKTIAIDRYYQPNADYSFPN--------------LSKDEYLAYLDELLD 169 (170)
T ss_pred HHHHHhhhhhcceEEEeccccCcCccccCCC--------------cCHHHHHHHHHHHhc
Confidence 444555444 3334555555555444333 556777888888765
No 73
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=46.30 E-value=2.3e+02 Score=25.82 Aligned_cols=127 Identities=18% Similarity=0.242 Sum_probs=65.3
Q ss_pred CChhHHHHHHHHHHHcCCCEEecCCCCCChHH----HHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHHHhh
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTAKIYGSEPA----LGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTLKNL 101 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~----lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~L 101 (316)
.+.++..++++.+.+.|++.|.-. |.|.. +-+.++.. ++.. .-.++.|+|-.. .+.+ .-+.|...
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~t---GGEPll~~~l~~li~~i-~~~~-~~~~i~itTNG~-----ll~~-~~~~L~~a 117 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLT---GGEPLLRKDLEDIIAAL-AALP-GIRDLALTTNGY-----LLAR-RAAALKDA 117 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---CCCCcCccCHHHHHHHH-HhcC-CCceEEEEcCch-----hHHH-HHHHHHHc
Confidence 456788889988899999988643 33332 33444332 1110 123577777642 1222 22345555
Q ss_pred CCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCC----eeEEEeccccHHHHHHHHHhc
Q 037896 102 GMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGL----CRGIGVSNFSSTKIQRLLDFA 173 (316)
Q Consensus 102 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~~~~~~~~~ 173 (316)
|++.+- +-+|..+.... .........+.++++++.+++.|. |..+.+...+.+++..+++.+
T Consensus 118 gl~~i~-ISlds~~~e~~---------~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~ 183 (331)
T PRK00164 118 GLDRVN-VSLDSLDPERF---------KAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWA 183 (331)
T ss_pred CCCEEE-EEeccCCHHHh---------ccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHH
Confidence 665443 23343321100 000000247789999999999885 223333344445555555443
No 74
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=46.22 E-value=55 Score=28.03 Aligned_cols=79 Identities=11% Similarity=0.049 Sum_probs=45.6
Q ss_pred HHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEec-cccHHHHHHHHHhcCC
Q 037896 97 TLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVS-NFSSTKIQRLLDFASV 175 (316)
Q Consensus 97 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~~~~~~~~~~~ 175 (316)
....+|.|++=+.+...--+. .+.+.. ..+.... .+.++.+||. |-+++.+.++++. .
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~-----------------V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~--~ 74 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRH-----------------QTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSN--T 74 (207)
T ss_pred HHHHcCCCEEEEecCCCCccc-----------------CCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh--C
Confidence 456699999999744321111 222222 2222222 3567889996 6778888888776 4
Q ss_pred CCcccccccCcccccHHHHHHHHh
Q 037896 176 PPATNQVEMHPMWRQSKLREICAD 199 (316)
Q Consensus 176 ~~~~~q~~~~~~~~~~~~~~~~~~ 199 (316)
.++++|++-. ...+.++..++
T Consensus 75 ~~d~vQLHG~---e~~~~~~~l~~ 95 (207)
T PRK13958 75 SINTIQLHGT---ESIDFIQEIKK 95 (207)
T ss_pred CCCEEEECCC---CCHHHHHHHhh
Confidence 5688888642 22344444444
No 75
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=46.12 E-value=2.4e+02 Score=25.91 Aligned_cols=218 Identities=15% Similarity=0.049 Sum_probs=107.3
Q ss_pred ChhHHHHHHHHHHHcCCCEEecCCCCCC-----hH----HHHHHHHhHhhcCCCCCCce-----EEEeccCCCCC-----
Q 037896 27 HRETTQLAVHTALKMGYRHFDTAKIYGS-----EP----ALGNALAESILEGTVKRENV-----FVTSKLWGSDH----- 87 (316)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DTA~~Ygs-----E~----~lG~al~~~~~~~~~~R~~~-----~I~tK~~~~~~----- 87 (316)
.++...++-+..+++|.+.+-|...+.+ +. ..-+..+...+--...|+++ +|+.-+++...
T Consensus 51 ~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g 130 (317)
T KOG1579|consen 51 NPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADG 130 (317)
T ss_pred ChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCC
Confidence 3566677777789999999999866652 11 11111111110000123333 34444433211
Q ss_pred -------------chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCee
Q 037896 88 -------------DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCR 154 (316)
Q Consensus 88 -------------~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir 154 (316)
+.+....+..|+.+.-.-+|++.+...-.. .....+++.|+++. -.+=-
T Consensus 131 ~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~~-----------------~EA~a~l~~l~~~~-~~~p~ 192 (317)
T KOG1579|consen 131 SEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPNV-----------------AEAKAALELLQELG-PSKPF 192 (317)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecCCH-----------------HHHHHHHHHHHhcC-CCCcE
Confidence 567788888888888777999999875211 22344455555541 11122
Q ss_pred EEEecccc------HHHHHHHHHhcCC--CCcccccccCcccccH-HHHHH-HHhcCCeEEEeccCCCCCCCCCCCCCCC
Q 037896 155 GIGVSNFS------STKIQRLLDFASV--PPATNQVEMHPMWRQS-KLREI-CADNKIHVSAYSPLGGPGNSWGSTAVVE 224 (316)
Q Consensus 155 ~iGvS~~~------~~~~~~~~~~~~~--~~~~~q~~~~~~~~~~-~~~~~-~~~~gi~v~~~~pl~~~G~~~~~~~~~~ 224 (316)
+|+++-.. .+.+++++....- .+..+=+++....... .+.+. ++-.++.+++| |.++ ..+........
T Consensus 193 ~is~t~~d~g~l~~G~t~e~~~~~~~~~~~~~~IGvNC~~~~~~~~~~~~L~~~~~~~~llvY-PNsG-e~yd~~~g~~~ 270 (317)
T KOG1579|consen 193 WISFTIKDEGRLRSGETGEEAAQLLKDGINLLGIGVNCVSPNFVEPLLKELMAKLTKIPLLVY-PNSG-EVYDNEKGGWI 270 (317)
T ss_pred EEEEEecCCCcccCCCcHHHHHHHhccCCceEEEEeccCCchhccHHHHHHhhccCCCeEEEe-cCCC-CCCccccCccc
Confidence 55555433 1234444444332 2455555554433332 22233 35668899998 6654 22211111000
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHhhcCCCEEEeCC--CCHHHHHHhhccc
Q 037896 225 SPVIKSIALKHKATPAQVALKWGLTKGASVIVKS--FNEERMRENMASF 271 (316)
Q Consensus 225 ~~~l~~ia~~~~~s~~q~al~~~l~~~~~~ivg~--~~~~~l~enl~a~ 271 (316)
.. ..+..+-+--.+...+.++-+|=|+ ++|.|+++.-+++
T Consensus 271 ~~-------~~~~~~~~~~~~~~~~lGv~iIGGCCrt~P~~I~aI~e~v 312 (317)
T KOG1579|consen 271 PT-------PFGLEPWQTYVKKAIDLGVRIIGGCCRTTPKHIRAIAEAV 312 (317)
T ss_pred CC-------CcccchHHHHHHHHHhcccceeCcccCCChHHHHHHHHHh
Confidence 00 0111221222222334466666665 5788888776654
No 76
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=45.72 E-value=2.7e+02 Score=26.38 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=43.4
Q ss_pred CccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccc
Q 037896 104 EYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVE 183 (316)
Q Consensus 104 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~ 183 (316)
+-+|.+.||.- -.++.++.+++.|.+ .|+.+-...-+....-... .
T Consensus 153 ~GVdfmTIHaG------------------------V~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~~--------~ 198 (432)
T COG0422 153 QGVDFMTIHAG------------------------VLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHNH--------K 198 (432)
T ss_pred hCCcEEEeehh------------------------hhHHHHHHHHhcCce--eeeeccchHHHHHHHHHcC--------C
Confidence 45888999953 256888999999986 6776666555544443321 1
Q ss_pred cCccccc-HHHHHHHHhcCCeE
Q 037896 184 MHPMWRQ-SKLREICADNKIHV 204 (316)
Q Consensus 184 ~~~~~~~-~~~~~~~~~~gi~v 204 (316)
=||++.. +.+++.|+++++.+
T Consensus 199 ENply~~fd~lleI~k~yDvtl 220 (432)
T COG0422 199 ENPLYEHFDELLEIFKEYDVTL 220 (432)
T ss_pred cCchhhhHHHHHHHHHHhCeee
Confidence 2444443 67777777777776
No 77
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=44.99 E-value=1e+02 Score=27.42 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEecccc---HH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFS---ST 164 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~---~~ 164 (316)
..-+..+-+.|.++|+++|++-+........... ......+.++.+..+.+ +..+..+++... .+
T Consensus 19 ~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~ 86 (266)
T cd07944 19 DEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGK-----------SAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDID 86 (266)
T ss_pred HHHHHHHHHHHHHCCCCEEEeecCCCCccccCCC-----------ccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHH
Confidence 3445667777999999999997654432110000 00112445555555543 345656665544 33
Q ss_pred HHHHHHHhcCCCCcccccc--cCcccccHHHHHHHHhcCCeEEEe
Q 037896 165 KIQRLLDFASVPPATNQVE--MHPMWRQSKLREICADNKIHVSAY 207 (316)
Q Consensus 165 ~~~~~~~~~~~~~~~~q~~--~~~~~~~~~~~~~~~~~gi~v~~~ 207 (316)
.+..+.+ .++ +.+.+. .+.+..-.+.+++++++|+.|...
T Consensus 87 ~l~~a~~-~gv--~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 87 LLEPASG-SVV--DMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred HHHHHhc-CCc--CEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 3443322 222 332222 222222257899999999876654
No 78
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=44.95 E-value=35 Score=30.67 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEeccCCC
Q 037896 161 FSSTKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLGG 212 (316)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 212 (316)
|+...+.++.+..+++..++-..||+... ++-++|++.|+.+++.-|+..
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 33456677778888888888888866444 899999999999999999875
No 79
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=42.89 E-value=2.3e+02 Score=24.87 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHHHcCCCEEecCCCCCChHH--HHHHHHhHhhcCCCCCCceEEEeccCCCCC-chHHHHHHHHHHhhCC
Q 037896 27 HRETTQLAVHTALKMGYRHFDTAKIYGSEPA--LGNALAESILEGTVKRENVFVTSKLWGSDH-DDPISALNQTLKNLGM 103 (316)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~--lG~al~~~~~~~~~~R~~~~I~tK~~~~~~-~~i~~~~~~sL~~Lg~ 103 (316)
+.++..+.++.+.+.|++.|-.--.-..+.. .=+++++. -.+++.|.-....... +...+ +-+.|+.+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~------~g~~~~l~vDan~~~~~~~a~~-~~~~l~~~-- 155 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA------VGDDAELRVDANRGWTPKQAIR-ALRALEDL-- 155 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh------cCCCCEEEEeCCCCcCHHHHHH-HHHHHHhc--
Confidence 3455667777888999998865322112222 22344442 1234444444322111 22111 22333433
Q ss_pred CccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCee-EEEeccccHHHHHHHHHhcCCCCccccc
Q 037896 104 EYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCR-GIGVSNFSSTKIQRLLDFASVPPATNQV 182 (316)
Q Consensus 104 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~~~~~~~~~~~~~~~~q~ 182 (316)
++.+++.|-.. +-++.+.+|++.-.+. ..|=+-++...+..+++.. .++++|+
T Consensus 156 ---~i~~iEeP~~~---------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~--~~d~v~~ 209 (265)
T cd03315 156 ---GLDYVEQPLPA---------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALG--AADAVNI 209 (265)
T ss_pred ---CCCEEECCCCc---------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC--CCCEEEE
Confidence 44556666321 1246677777775554 4555667788888777653 3466666
Q ss_pred ccCcc---cccHHHHHHHHhcCCeEEEeccCC
Q 037896 183 EMHPM---WRQSKLREICADNKIHVSAYSPLG 211 (316)
Q Consensus 183 ~~~~~---~~~~~~~~~~~~~gi~v~~~~pl~ 211 (316)
..... ....++...|+++|+.++..+.+.
T Consensus 210 k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~ 241 (265)
T cd03315 210 KTAKTGGLTKAQRVLAVAEALGLPVMVGSMIE 241 (265)
T ss_pred ecccccCHHHHHHHHHHHHHcCCcEEecCccc
Confidence 65443 222588999999999998876554
No 80
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=42.34 E-value=3.2e+02 Score=26.88 Aligned_cols=147 Identities=12% Similarity=0.066 Sum_probs=74.3
Q ss_pred CCCChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccc
Q 037896 51 IYGSEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEED 130 (316)
Q Consensus 51 ~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 130 (316)
.+|++..+-+++++..++. +.+-++|.|-. .. +-+-..++...++++.+.++++.++.|...... .
T Consensus 66 v~G~~~~L~~aI~~~~~~~--~P~~I~V~sTC-~s--elIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~---------~ 131 (511)
T TIGR01278 66 ARGSQTRLVDTVRRVDDRF--KPDLIVVTPSC-TS--SLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKE---------N 131 (511)
T ss_pred ecchHHHHHHHHHHHHHhc--CCCEEEEeCCC-hH--HHhccCHHHHHHHhccCCCcEEEecCCCcccch---------h
Confidence 3677888888887754333 23334454433 21 334445555556566556889999988543110 0
Q ss_pred hhhhHhHHHHHHHHHHH-------HHcCCeeEEEeccc------cHHHHHHHHHhcCCCCccc--------------ccc
Q 037896 131 FEQQLEFEATWAGMEKC-------LDMGLCRGIGVSNF------SSTKIQRLLDFASVPPATN--------------QVE 183 (316)
Q Consensus 131 ~~~~~~~~~~~~~L~~l-------~~~G~ir~iGvS~~------~~~~~~~~~~~~~~~~~~~--------------q~~ 183 (316)
.-.......+++.+..- .+.+.|--||.++. +...+.++++..++.+.++ ...
T Consensus 132 ~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~ 211 (511)
T TIGR01278 132 QAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAW 211 (511)
T ss_pred HHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCc
Confidence 00001122233322211 23456888898763 3356677777766443222 112
Q ss_pred cCcc-ccc--HHHHHHH-HhcCCeEEEeccCC
Q 037896 184 MHPM-WRQ--SKLREIC-ADNKIHVSAYSPLG 211 (316)
Q Consensus 184 ~~~~-~~~--~~~~~~~-~~~gi~v~~~~pl~ 211 (316)
+|+. .+. ...-++. ++.|++++...|++
T Consensus 212 ~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 212 LNICPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred EEEEechHHHHHHHHHHHHHhCCCcccccccC
Confidence 2222 111 1233333 34599988777775
No 81
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=41.35 E-value=2e+02 Score=24.78 Aligned_cols=104 Identities=16% Similarity=0.099 Sum_probs=55.6
Q ss_pred CCChhHHHHHHHHHHHc-----CCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCCCC-------------
Q 037896 25 DNHRETTQLAVHTALKM-----GYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWGSD------------- 86 (316)
Q Consensus 25 ~~~~~~~~~~l~~A~~~-----Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~------------- 86 (316)
+.++++....++.|++. |+|--=.+....++..+...++.. . .|.-+||=|+....+
T Consensus 70 ~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l---~--~~gl~FvDS~T~~~s~a~~~A~~~gvp~ 144 (213)
T PF04748_consen 70 GMSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVL---K--ERGLFFVDSRTTPRSVAPQVAKELGVPA 144 (213)
T ss_dssp TS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHH---H--HTT-EEEE-S--TT-SHHHHHHHCT--E
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHH---H--HcCCEEEeCCCCcccHHHHHHHHcCCCE
Confidence 35677777777777765 443222221212455566555543 1 355566645443221
Q ss_pred ------------CchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCC
Q 037896 87 ------------HDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGL 152 (316)
Q Consensus 87 ------------~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ 152 (316)
.+.|++++++..+.-+..-.=+..-|-- | ...+.+-+.+.++.++|.
T Consensus 145 ~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~----p---------------~Tl~~L~~~~~~l~~~gi 203 (213)
T PF04748_consen 145 ARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHPR----P---------------ETLEALEEWLPELEAQGI 203 (213)
T ss_dssp EE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-S----C---------------CHHHHHHHHHHHHHHCTE
T ss_pred EeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcCC----H---------------HHHHHHHHHHhHHhhCCE
Confidence 1778899998888888766666666632 1 235555566666666664
No 82
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=41.23 E-value=1.1e+02 Score=29.14 Aligned_cols=64 Identities=27% Similarity=0.356 Sum_probs=38.4
Q ss_pred HcCCCEEecCCCCC------ChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHHHhhCCCccceEeeec
Q 037896 40 KMGYRHFDTAKIYG------SEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTLKNLGMEYVDMYLVHW 113 (316)
Q Consensus 40 ~~Gi~~~DTA~~Yg------sE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~ 113 (316)
+.|=+|+|....|+ +...+=++|++ .-+++..++.+... .....+-+.|-.+-- ..|-+++-+
T Consensus 39 ~~G~~YlDf~~Giav~~lGH~hP~iv~al~~-------Q~~kl~h~sn~~~~---~~~~~la~~L~~~s~-~~d~vff~N 107 (404)
T COG4992 39 QQGREYLDFAAGIAVNNLGHCHPALVEALKE-------QAEKLWHVSNLFYN---EPQAELAEKLVELSP-FADRVFFCN 107 (404)
T ss_pred CCCCEeeeeccceeeeccCCCCHHHHHHHHH-------HHHHhhhcccccCC---hHHHHHHHHHHhhCc-cccEEEEcC
Confidence 35778899888887 46777888887 35555555555433 233444444433332 367776665
Q ss_pred C
Q 037896 114 P 114 (316)
Q Consensus 114 p 114 (316)
-
T Consensus 108 S 108 (404)
T COG4992 108 S 108 (404)
T ss_pred C
Confidence 3
No 83
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=41.18 E-value=49 Score=25.57 Aligned_cols=40 Identities=13% Similarity=0.001 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEecCCCCC-ChHHHHHHHHhH
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTAKIYG-SEPALGNALAES 65 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-sE~~lG~al~~~ 65 (316)
.+.+.-..++...++.|.+.-+.|..|| +...+..|.+.+
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455666788889999999999999999 999999999986
No 84
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.92 E-value=2.8e+02 Score=24.87 Aligned_cols=140 Identities=14% Similarity=0.017 Sum_probs=72.6
Q ss_pred HhHHHHHHHHHHHHHcCCeeEEEeccc-cH---HHHHHHHHhcC-CCCcccccccCcccccHHHHHHHHhcCCeEEEecc
Q 037896 135 LEFEATWAGMEKCLDMGLCRGIGVSNF-SS---TKIQRLLDFAS-VPPATNQVEMHPMWRQSKLREICADNKIHVSAYSP 209 (316)
Q Consensus 135 ~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~---~~~~~~~~~~~-~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~p 209 (316)
...+.+++.+++.++++.---|++-++ ++ ..++++++.+. ...+-+-+.=-|.....++.+.|+++||..+-.-+
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeC
Confidence 446778888888887755444554443 22 12333222221 11122222222333346789999999998876544
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHh----------CCCH--------HHHHHHHhhcC---CCEEEeCCCCHHHHHHhh
Q 037896 210 LGGPGNSWGSTAVVESPVIKSIALKH----------KATP--------AQVALKWGLTK---GASVIVKSFNEERMRENM 268 (316)
Q Consensus 210 l~~~G~~~~~~~~~~~~~l~~ia~~~----------~~s~--------~q~al~~~l~~---~~~~ivg~~~~~~l~enl 268 (316)
-.. .+++++++++.- |+|- ..-.++.+.+. |.++=.|.++++|+++..
T Consensus 156 Ptt-----------~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~ 224 (265)
T COG0159 156 PTT-----------PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVA 224 (265)
T ss_pred CCC-----------CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHH
Confidence 332 245555555432 2221 23334444443 344446778888888888
Q ss_pred cccCC-cCCHHHHHHHhc
Q 037896 269 ASFNI-KLDDEDLLQIDN 285 (316)
Q Consensus 269 ~a~~~-~Lt~e~~~~l~~ 285 (316)
++.+. -.-.+-++.|.+
T Consensus 225 ~~ADGVIVGSAiV~~i~~ 242 (265)
T COG0159 225 EAADGVIVGSAIVKIIEE 242 (265)
T ss_pred HhCCeEEEcHHHHHHHHh
Confidence 77652 333344444443
No 85
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=39.31 E-value=1.2e+02 Score=28.38 Aligned_cols=200 Identities=15% Similarity=0.157 Sum_probs=88.8
Q ss_pred ChhHHHHHHHHHHHcCCCEEecCCCCCC---hHH---HHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHH--HHHH
Q 037896 27 HRETTQLAVHTALKMGYRHFDTAKIYGS---EPA---LGNALAESILEGTVKRENVFVTSKLWGSDHDDPISAL--NQTL 98 (316)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DTA~~Ygs---E~~---lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~--~~sL 98 (316)
+.++..+.|+.|.++|++.+=|+=+..- +.. +.+.++.. ....+.|..-+.+..-+.+-.+. -..+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a------~~~~~~v~~Disp~~l~~lg~~~~dl~~~ 85 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLA------KELGMEVIADISPKVLKKLGISYDDLSFF 85 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHH------HHCT-EEEEEE-CCHHHTTT-BTTBTHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHH------HHCCCEEEEECCHHHHHHcCCCHHHHHHH
Confidence 3567888999999999999999876641 111 22222222 23455555555432111110000 1234
Q ss_pred HhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCc
Q 037896 99 KNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPA 178 (316)
Q Consensus 99 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~ 178 (316)
+.||++.+= | |.+ . ..+.+.+|-++|.--.+=.|+.+.+.+..+.+... .+.
T Consensus 86 ~~lGi~~lR---l------D~G--------------f----~~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~-~~~ 137 (357)
T PF05913_consen 86 KELGIDGLR---L------DYG--------------F----SGEEIAKLSKNGIKIELNASTITEEELDELIKYGA-NFS 137 (357)
T ss_dssp HHHT-SEEE---E------SSS-------------------SCHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT---GG
T ss_pred HHcCCCEEE---E------CCC--------------C----CHHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcC-CHH
Confidence 455544221 1 111 1 12445555555776667778877777777665432 111
Q ss_pred ccccccCccccc----------HHHHHHHHhcCCeEEEeccCCC--CCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHH
Q 037896 179 TNQVEMHPMWRQ----------SKLREICADNKIHVSAYSPLGG--PGNSWGSTAVVESPVIKSIALKHKATPAQVALKW 246 (316)
Q Consensus 179 ~~q~~~~~~~~~----------~~~~~~~~~~gi~v~~~~pl~~--~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~ 246 (316)
-+.. ++-++++ .+.-.+.++.|+.+.|+-|-.. .|.++..-+-+ -...+.+|. +|...
T Consensus 138 ~i~a-~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~~rGPl~~GLPTl--------E~hR~~~p~-~aa~~ 207 (357)
T PF05913_consen 138 NIIA-CHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDENKRGPLYEGLPTL--------EKHRNLPPY-AAALE 207 (357)
T ss_dssp GEEE-E---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SSS-BTTT-S--BSB--------GGGTTS-HH-HHHHH
T ss_pred HeEE-EecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCcccCCccCCCCcc--------HHHcCCCHH-HHHHH
Confidence 1111 2223332 3567788999999999887653 12211111111 111234444 45555
Q ss_pred hhcCC--CEEEeCCC--CHHHHHHhhcc
Q 037896 247 GLTKG--ASVIVKSF--NEERMRENMAS 270 (316)
Q Consensus 247 ~l~~~--~~~ivg~~--~~~~l~enl~a 270 (316)
+...+ .-|++|=. +.++++.....
T Consensus 208 L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 208 LFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 55555 78888854 55556555444
No 86
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=39.25 E-value=73 Score=22.87 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=36.6
Q ss_pred HHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEec
Q 037896 144 MEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYS 208 (316)
Q Consensus 144 L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~ 208 (316)
+++|++.|++. +|. .+..+++.......+++--+.++ +....+...|+.++|+++-+.
T Consensus 3 ~~~~~ragkl~-~G~-----~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-IGT-----KQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-EcH-----HHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 45667777652 343 45556666655555555544444 223578899999999997764
No 87
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=38.98 E-value=3.1e+02 Score=26.51 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred cCccceeccccC----------CChhHHHHHHHHHHHcCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccC
Q 037896 14 IPVLGLGTYSFD----------NHRETTQLAVHTALKMGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLW 83 (316)
Q Consensus 14 vs~lglG~~~~~----------~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~ 83 (316)
+.+|.+|.-++. .+.+++.+.++.+.++|+..+ .+-+..-+.
T Consensus 163 ~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v----------------------------~~dli~GlP 214 (453)
T PRK13347 163 FNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESI----------------------------NFDLIYGLP 214 (453)
T ss_pred CCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcE----------------------------EEeEEEeCC
Q ss_pred CCCCchHHHHHHHHHHhhCCCccceEee-ecCC------------CCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHc
Q 037896 84 GSDHDDPISALNQTLKNLGMEYVDMYLV-HWPV------------RLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDM 150 (316)
Q Consensus 84 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~l-H~p~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 150 (316)
..+.+.+.+.++..+ +|+.++|.++-+ |.|. ..++. ...+-...+.+.|.+.
T Consensus 215 gqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~--------------~~~~~~~~~~~~L~~~ 279 (453)
T PRK13347 215 HQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAE--------------ERLRQARAVADRLLAA 279 (453)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHH--------------HHHHHHHHHHHHHHHC
Q ss_pred CCeeEEEeccc
Q 037896 151 GLCRGIGVSNF 161 (316)
Q Consensus 151 G~ir~iGvS~~ 161 (316)
|..+ +|+++|
T Consensus 280 Gy~~-~~~~~f 289 (453)
T PRK13347 280 GYVP-IGLDHF 289 (453)
T ss_pred CCEE-Eeccce
No 88
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=38.46 E-value=3.4e+02 Score=25.72 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHH-HHHHHHHHcCCeeEEEeccccH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATW-AGMEKCLDMGLCRGIGVSNFSS 163 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~~G~ir~iGvS~~~~ 163 (316)
+.+++.++..+ +|+.++|.++.+.--... +-..................+.+ .+.+.|.+.|.. ++++|||..
T Consensus 182 e~~~~tl~~~~-~l~p~~is~y~L~~~pgT-~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 182 EDWQASLEAAI-ALNPTHLSCYDLVLEPGT-AFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred HHHHHHHHHHH-cCCCCEEEEecceecCCc-hhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 55555555443 488899998877632110 00000000000000001122233 466778888875 689999974
No 89
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=38.14 E-value=1.2e+02 Score=24.25 Aligned_cols=45 Identities=4% Similarity=0.047 Sum_probs=33.4
Q ss_pred CCCceEEEeccCCCCC-chHHHHHHHHHHhhC--CCccceEeeecCCC
Q 037896 72 KRENVFVTSKLWGSDH-DDPISALNQTLKNLG--MEYVDMYLVHWPVR 116 (316)
Q Consensus 72 ~R~~~~I~tK~~~~~~-~~i~~~~~~sL~~Lg--~d~iDl~~lH~p~~ 116 (316)
.|=.+.|+-|++.... ..+++.+.++++... ....|++++..+..
T Consensus 46 ~RlG~sVSKKvg~AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~ 93 (138)
T PRK00730 46 CKVGITVSKKFGKAHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNS 93 (138)
T ss_pred ceEEEEEecccccchhHHHHHHHHHHHHHHhhcccCCceEEEEecccc
Confidence 5778888888765322 778888888887764 34689999998754
No 90
>PRK00208 thiG thiazole synthase; Reviewed
Probab=37.71 E-value=2.9e+02 Score=24.48 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQ 167 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~ 167 (316)
+...+-.+-..+-++++.|=|=.+..+...-| +..+++++.++|.++|.+- +=+++-++....
T Consensus 76 ~eAv~~a~lare~~~~~~iKlEVi~d~~~llp----------------d~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak 138 (250)
T PRK00208 76 EEAVRTARLAREALGTNWIKLEVIGDDKTLLP----------------DPIETLKAAEILVKEGFVV-LPYCTDDPVLAK 138 (250)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCCCCCCc----------------CHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHH
Confidence 45555566677788899888877776644333 3788999999999999974 445666666555
Q ss_pred HHHHh
Q 037896 168 RLLDF 172 (316)
Q Consensus 168 ~~~~~ 172 (316)
++.+.
T Consensus 139 ~l~~~ 143 (250)
T PRK00208 139 RLEEA 143 (250)
T ss_pred HHHHc
Confidence 55554
No 91
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=37.48 E-value=1.4e+02 Score=25.96 Aligned_cols=73 Identities=14% Similarity=0.038 Sum_probs=47.0
Q ss_pred CChhHHHHHHHHHHHcCCCEEecCCCCC----ChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHHHhh
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTAKIYG----SEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTLKNL 101 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----sE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~L 101 (316)
.+.++..++.+.+.++|..|+=|+..|+ +-+.+....+. .+.++-|-.-.+..+.+...+-++.--.|+
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~-------~~~~~~IKasGGIrt~~~a~~~i~aGA~ri 205 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET-------VGPRVGVKASGGIRTLEDALAMIEAGATRL 205 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-------hCCCceEEeeCCcCCHHHHHHHHHcCcceE
Confidence 4567788899999999999999999985 33333333222 233333333334455566777777666777
Q ss_pred CCCc
Q 037896 102 GMEY 105 (316)
Q Consensus 102 g~d~ 105 (316)
|+.+
T Consensus 206 GtS~ 209 (221)
T PRK00507 206 GTSA 209 (221)
T ss_pred ccCc
Confidence 7654
No 92
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=37.46 E-value=2.1e+02 Score=25.52 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCC-eeEEEeccccHHHHHHH
Q 037896 91 ISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGL-CRGIGVSNFSSTKIQRL 169 (316)
Q Consensus 91 ~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~~~~~ 169 (316)
+..+-+.|.++|++.|.+-. |... .+.+++.+.+.+.++ .+-.+....+...++.+
T Consensus 24 k~~i~~~L~~~Gv~~IEvG~---P~~~--------------------~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a 80 (262)
T cd07948 24 KIEIAKALDAFGVDYIELTS---PAAS--------------------PQSRADCEAIAKLGLKAKILTHIRCHMDDARIA 80 (262)
T ss_pred HHHHHHHHHHcCCCEEEEEC---CCCC--------------------HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHH
Confidence 44556669999998888863 5221 122344444444333 33355556677788887
Q ss_pred HHhcCCCCcccccccCccc------cc--------HHHHHHHHhcCCeEEEec
Q 037896 170 LDFASVPPATNQVEMHPMW------RQ--------SKLREICADNKIHVSAYS 208 (316)
Q Consensus 170 ~~~~~~~~~~~q~~~~~~~------~~--------~~~~~~~~~~gi~v~~~~ 208 (316)
.+. +++..-+-+..|..+ .. .+.+.+++++|+.|....
T Consensus 81 ~~~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 81 VET-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred HHc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 774 332211111112111 11 356789999998876554
No 93
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=36.13 E-value=37 Score=30.53 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=27.0
Q ss_pred ccCccceeccccC------------CChhHHHHHHHHHHHcCCCEE
Q 037896 13 TIPVLGLGTYSFD------------NHRETTQLAVHTALKMGYRHF 46 (316)
Q Consensus 13 ~vs~lglG~~~~~------------~~~~~~~~~l~~A~~~Gi~~~ 46 (316)
-+|.-||||--++ .|+....-+++.|+++||..|
T Consensus 8 ViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i 53 (291)
T COG1210 8 VIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEI 53 (291)
T ss_pred EEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEE
Confidence 4678899997765 466677889999999999844
No 94
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=36.11 E-value=3.8e+02 Score=25.36 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHcCCCEEecCCCCCChHH---HHHHHHhHhhcCCCCCCc-eEEEeccCCCCCchHHHHHHHHHHhhCC
Q 037896 28 RETTQLAVHTALKMGYRHFDTAKIYGSEPA---LGNALAESILEGTVKREN-VFVTSKLWGSDHDDPISALNQTLKNLGM 103 (316)
Q Consensus 28 ~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~---lG~al~~~~~~~~~~R~~-~~I~tK~~~~~~~~i~~~~~~sL~~Lg~ 103 (316)
..+..+.++.++++|+-= ..|+++.. +-.|.++.. ++..+++ ++.+ ..+...+...++.+-
T Consensus 40 pp~i~~Al~~rvdhGvfG----Y~~~~~~~~~ai~~w~~~r~--~~~i~~e~i~~~--------p~VVpgi~~~I~~~T- 104 (388)
T COG1168 40 PPEIIEALRERVDHGVFG----YPYGSDELYAAIAHWFKQRH--QWEIKPEWIVFV--------PGVVPGISLAIRALT- 104 (388)
T ss_pred CHHHHHHHHHHHhcCCCC----CCCCCHHHHHHHHHHHHHhc--CCCCCcceEEEc--------CcchHhHHHHHHHhC-
Confidence 456788999999999842 23445544 333443321 2212322 2222 234455555555554
Q ss_pred CccceEeeecCCC
Q 037896 104 EYVDMYLVHWPVR 116 (316)
Q Consensus 104 d~iDl~~lH~p~~ 116 (316)
+.=|-+.++.|..
T Consensus 105 ~~gd~Vvi~tPvY 117 (388)
T COG1168 105 KPGDGVVIQTPVY 117 (388)
T ss_pred cCCCeeEecCCCc
Confidence 5678888888754
No 95
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=35.90 E-value=1.2e+02 Score=26.28 Aligned_cols=99 Identities=17% Similarity=0.252 Sum_probs=61.8
Q ss_pred HhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCccccc--HHHHHHHHhcCCeEEEeccCCC
Q 037896 135 LEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ--SKLREICADNKIHVSAYSPLGG 212 (316)
Q Consensus 135 ~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~~ 212 (316)
...++..++|..|+-+|.+--==.|.+....++.+++..+.+ .|.|++.. .+++...-+.|..++.-+.-+.
T Consensus 73 ~eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~ 146 (223)
T COG2102 73 REVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAVSAE 146 (223)
T ss_pred hhHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEEecc
Confidence 347778888888884444322224556666777777776654 37777765 5788888888887777666665
Q ss_pred CCCC--CCCCCC--CCcHHHHHHHHHhCCCHH
Q 037896 213 PGNS--WGSTAV--VESPVIKSIALKHKATPA 240 (316)
Q Consensus 213 ~G~~--~~~~~~--~~~~~l~~ia~~~~~s~~ 240 (316)
|+. |-...+ ...+.+..+++++|+.|+
T Consensus 147 -gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 147 -GLDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred -CCChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 432 111111 122567778888887663
No 96
>PRK08609 hypothetical protein; Provisional
Probab=35.60 E-value=4.7e+02 Score=26.24 Aligned_cols=183 Identities=11% Similarity=0.097 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCCEEecCCCCC--------ChHHHHHH---HHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHH
Q 037896 30 TTQLAVHTALKMGYRHFDTAKIYG--------SEPALGNA---LAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTL 98 (316)
Q Consensus 30 ~~~~~l~~A~~~Gi~~~DTA~~Yg--------sE~~lG~a---l~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL 98 (316)
...++++.|.+.|+++|=.++|+. +...+-.. ++..-... ..=+|++..=+.... +......+..|
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~--~~i~Il~GiEv~i~~-~g~~d~~~~~L 426 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKY--PEIDILSGIEMDILP-DGSLDYDDEVL 426 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhc--CCCeEEEEEEEeecC-CcchhhcHHHH
Confidence 356799999999999998888862 11111111 22210001 111334333333322 22233334455
Q ss_pred HhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEecc------cc--HHHHHHHH
Q 037896 99 KNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSN------FS--STKIQRLL 170 (316)
Q Consensus 99 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~------~~--~~~~~~~~ 170 (316)
.. .||+ +.-+|++.. .+.++.++.+.++.+.|.+.-||=-. .. ...+++++
T Consensus 427 ~~--~D~v-I~SvH~~~~------------------~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~ 485 (570)
T PRK08609 427 AE--LDYV-IAAIHSSFS------------------QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLI 485 (570)
T ss_pred Hh--hCEE-EEEeecCCC------------------CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHH
Confidence 54 5666 677886521 12455678888888888877665332 11 22333443
Q ss_pred HhcCCCCcccccccCccc--ccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHH
Q 037896 171 DFASVPPATNQVEMHPMW--RQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQV 242 (316)
Q Consensus 171 ~~~~~~~~~~q~~~~~~~--~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~ 242 (316)
+.+.-.=.++|++-+++. ....++..|.+.|+.++. ++=+. .+..+-..+.-..+|++-+.++.++
T Consensus 486 ~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~i-gSDAH-----~~~~l~~~~~~v~~ar~~~~~~~~v 553 (570)
T PRK08609 486 ELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAI-NTDAH-----HTEMLDDMKYGVATARKGWIQKDRV 553 (570)
T ss_pred HHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEE-ECCCC-----ChhhhCcHHHHHHHHHHcCCCHHHc
Confidence 332111134555555442 236789999999997543 23222 1123333455667777777776654
No 97
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=35.44 E-value=3.7e+02 Score=25.12 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHhhCCCccceEeeec-CCCC--CCC-CCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHW-PVRL--KPW-TCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSS 163 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~-p~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~ 163 (316)
+.+++.++..+ .|+.++|.+|.+.- |... ... ........++ ...+-...+.+.|.+.|.. ++++|||..
T Consensus 170 ~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 243 (370)
T PRK06294 170 SDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEE----ILAEMSLAAEELLTSQGFT-RYELASYAK 243 (370)
T ss_pred HHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHH----HHHHHHHHHHHHHHHcCCC-eeeeeeeeC
Confidence 56666666655 48899999987763 2110 000 0000000000 1112222456667788874 689999964
No 98
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=35.32 E-value=3.8e+02 Score=25.06 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcC-CeeEEEeccccHHHHHHH
Q 037896 91 ISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMG-LCRGIGVSNFSSTKIQRL 169 (316)
Q Consensus 91 ~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvS~~~~~~~~~~ 169 (316)
+..+-+.|.++|+++|++- .|... +.-++.++.+.+.+ ..+..+++......++.+
T Consensus 25 k~~ia~~L~~~Gv~~IEvG---~p~~~--------------------~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a 81 (365)
T TIGR02660 25 KLAIARALDEAGVDELEVG---IPAMG--------------------EEERAVIRAIVALGLPARLMAWCRARDADIEAA 81 (365)
T ss_pred HHHHHHHHHHcCCCEEEEe---CCCCC--------------------HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHH
Confidence 4556677999999998884 34211 12255566666553 366677777777778776
Q ss_pred HHhcCCCCcccccccCcccc--------c------HHHHHHHHhcCCeEEEe
Q 037896 170 LDFASVPPATNQVEMHPMWR--------Q------SKLREICADNKIHVSAY 207 (316)
Q Consensus 170 ~~~~~~~~~~~q~~~~~~~~--------~------~~~~~~~~~~gi~v~~~ 207 (316)
.+. +.+...+-+..|..+. + .+.+++++++|+.+...
T Consensus 82 ~~~-g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~ 132 (365)
T TIGR02660 82 ARC-GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG 132 (365)
T ss_pred HcC-CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 654 2221111112222111 1 36788999999876543
No 99
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=35.28 E-value=4.4e+02 Score=25.79 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=59.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCC-chHHHHHHHHHHhhCCC
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWGSDH-DDPISALNQTLKNLGME 104 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~-~~i~~~~~~sL~~Lg~d 104 (316)
.+.+-....++.|.++||..|=..+.-.--+.+-.+++...+.|. .-.+.|+-...+... +.+.+.+++ +..+|.+
T Consensus 102 ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~--~~~~~i~yt~sp~~t~~y~~~~a~~-l~~~Gad 178 (468)
T PRK12581 102 YADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGK--EAQLCIAYTTSPVHTLNYYLSLVKE-LVEMGAD 178 (468)
T ss_pred CcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCC--EEEEEEEEEeCCcCcHHHHHHHHHH-HHHcCCC
Confidence 345566777999999999988766655433334444433211242 222334433322211 445454444 5567854
Q ss_pred ccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccH
Q 037896 105 YVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSS 163 (316)
Q Consensus 105 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~ 163 (316)
.+.|-..... ..+.++.+.+..+++...+ -||+=.|+.
T Consensus 179 ---~I~IkDtaG~-----------------l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt 216 (468)
T PRK12581 179 ---SICIKDMAGI-----------------LTPKAAKELVSGIKAMTNL-PLIVHTHAT 216 (468)
T ss_pred ---EEEECCCCCC-----------------cCHHHHHHHHHHHHhccCC-eEEEEeCCC
Confidence 4444432111 3455666666666665443 478777764
No 100
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=35.21 E-value=1.2e+02 Score=24.75 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHcCCCEEecCCCCC-ChHHHHHHHHhHhhcCCCCCCceEEEeccCCC-CC--chHHHHHHHHHHhhCCC
Q 037896 29 ETTQLAVHTALKMGYRHFDTAKIYG-SEPALGNALAESILEGTVKRENVFVTSKLWGS-DH--DDPISALNQTLKNLGME 104 (316)
Q Consensus 29 ~~~~~~l~~A~~~Gi~~~DTA~~Yg-sE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~-~~--~~i~~~~~~sL~~Lg~d 104 (316)
+...-.+++|-+.||.+|=.|..|| +-..+-+.+.. . =+++++|--... .. ..+.+.+++-|+..|.+
T Consensus 14 ~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg-------~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~ 85 (186)
T COG1751 14 ETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG-------D-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAK 85 (186)
T ss_pred HHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc-------C-ceEEEEEeecccccCCceecCHHHHHHHHHcCce
Confidence 3445567888999999999999998 33333333322 1 246655543222 22 56778889999999964
No 101
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=35.08 E-value=2.9e+02 Score=23.69 Aligned_cols=142 Identities=11% Similarity=0.106 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHH
Q 037896 89 DPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQR 168 (316)
Q Consensus 89 ~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~ 168 (316)
..+..+-+.|.++|+++|++- .|... ....+.++.+.+.... .+-.+++......++.
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg---~~~~~-----------------~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~ 71 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVG---FPFAS-----------------EDDFEQVRRLREALPN--ARLQALCRANEEDIER 71 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE---HCTSS-----------------HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEc---ccccC-----------------HHHHHHhhhhhhhhcc--cccceeeeehHHHHHH
Confidence 344556667999999999987 23211 2234445555555555 4445566666666666
Q ss_pred HHH---hcCCCCcccccccCccc--------------ccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHH
Q 037896 169 LLD---FASVPPATNQVEMHPMW--------------RQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSI 231 (316)
Q Consensus 169 ~~~---~~~~~~~~~q~~~~~~~--------------~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~i 231 (316)
.++ .++.+..-+-...|..+ .-.+.+.++++.|..+...-+-.. ....+.+.++
T Consensus 72 ~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~---------~~~~~~~~~~ 142 (237)
T PF00682_consen 72 AVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS---------RTDPEELLEL 142 (237)
T ss_dssp HHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG---------GSSHHHHHHH
T ss_pred HHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc---------cccHHHHHHH
Confidence 443 23333222223333311 114689999999999933322221 1223444444
Q ss_pred HHHhCCCHHHHHHHHhhcCC-CEEE---eCCCCHHHHHHhhcccC
Q 037896 232 ALKHKATPAQVALKWGLTKG-ASVI---VKSFNEERMRENMASFN 272 (316)
Q Consensus 232 a~~~~~s~~q~al~~~l~~~-~~~i---vg~~~~~~l~enl~a~~ 272 (316)
++.. ... .. ...| +|.-+|+++.+.+..+.
T Consensus 143 ~~~~--------~~~---g~~~i~l~Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 143 AEAL--------AEA---GADIIYLADTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp HHHH--------HHH---T-SEEEEEETTS-S-HHHHHHHHHHHH
T ss_pred HHHH--------HHc---CCeEEEeeCccCCcCHHHHHHHHHHHH
Confidence 4431 111 12 3333 47788888888776654
No 102
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=34.75 E-value=1.9e+02 Score=27.51 Aligned_cols=68 Identities=7% Similarity=0.002 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCee-EEEeccccHHHHHHHHHhcCCCCcccccccCcc---cccHHHHHHHHhcCCeEEEeccC
Q 037896 141 WAGMEKCLDMGLCR-GIGVSNFSSTKIQRLLDFASVPPATNQVEMHPM---WRQSKLREICADNKIHVSAYSPL 210 (316)
Q Consensus 141 ~~~L~~l~~~G~ir-~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~v~~~~pl 210 (316)
++.+.+|++.-.+. ..|=|-++...+..+++... ++++|...... ....++.+.|+.+|+.++.++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a--~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQL--IDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCC--CCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 57788888886665 67778888888888887643 46677655432 22368999999999999886554
No 103
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.50 E-value=1.1e+02 Score=26.15 Aligned_cols=60 Identities=8% Similarity=0.091 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCeeEEEeccc-cHHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEE
Q 037896 140 TWAGMEKCLDMGLCRGIGVSNF-SSTKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSA 206 (316)
Q Consensus 140 ~~~~L~~l~~~G~ir~iGvS~~-~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 206 (316)
..+.+++++++..=-.||..+. +.++++.+.+... ++-.+|. -+.+++++|+++|+.++.
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA------~FivSP~-~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS------RFIVSPG-TTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC------CEEECCC-CCHHHHHHHHHcCCCEeC
Confidence 4456666665533246898884 7788888777532 2223442 236999999999998875
No 104
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=34.49 E-value=2.6e+02 Score=22.92 Aligned_cols=74 Identities=12% Similarity=0.004 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCccccc-------HHHHHHHHhcCCeEEEecc
Q 037896 137 FEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ-------SKLREICADNKIHVSAYSP 209 (316)
Q Consensus 137 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-------~~~~~~~~~~gi~v~~~~p 209 (316)
.+++++.--+=-++.-|++|=|.+-+.....++++...-...++-+.|+.-+.+ +++-+..+++|..|+.-|-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 566777666666778889998888777777777777543333444444444332 5789999999999887554
Q ss_pred C
Q 037896 210 L 210 (316)
Q Consensus 210 l 210 (316)
.
T Consensus 92 a 92 (186)
T COG1751 92 A 92 (186)
T ss_pred h
Confidence 4
No 105
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=34.49 E-value=1.8e+02 Score=25.55 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=55.0
Q ss_pred CChhHHHHHHHHHHHcCCCEEecCCCCC------ChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCC------------
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTAKIYG------SEPALGNALAESILEGTVKRENVFVTSKLWGSDH------------ 87 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg------sE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~------------ 87 (316)
.+++++.+++..-..+||+-==.++.-| .|.-+-+|+.-. +.+++||+++.=...++..+.
T Consensus 28 L~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~~~fa~Av~iL-~~~GlPr~~f~~l~d~Fp~dgLVsSP~eEkaR~ 106 (246)
T COG4669 28 LSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEESDFAEAVEIL-NQNGLPRKKFTTLGDIFPKDGLVSSPTEEKARL 106 (246)
T ss_pred CCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcHHHHHHHHHHH-HhcCCCCCCCCcHHHhCCcccccCCcHHHHHHH
Confidence 6788999999888999999877777666 367777776433 224458888766666665543
Q ss_pred -chHHHHHHHHHHhhC
Q 037896 88 -DDPISALNQTLKNLG 102 (316)
Q Consensus 88 -~~i~~~~~~sL~~Lg 102 (316)
..+.++++++|+++.
T Consensus 107 ~~~~eQ~le~tLs~mD 122 (246)
T COG4669 107 NYAKEQQLEQTLSKMD 122 (246)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 445677888888876
No 106
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=34.19 E-value=1.4e+02 Score=25.65 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCeeEEEeccc-cHHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEE
Q 037896 140 TWAGMEKCLDMGLCRGIGVSNF-SSTKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSA 206 (316)
Q Consensus 140 ~~~~L~~l~~~G~ir~iGvS~~-~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 206 (316)
.++.+++++++..=-.||..+. +.++++.+.+..- .+ -.+|.. +.+++++|+++|+.++.
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~F-----ivsP~~-~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QF-----IVSPGL-TPELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CE-----EECCCC-CHHHHHHHHHcCCcEEC
Confidence 4566666666533246899885 7788888877532 22 234432 46999999999998876
No 107
>PRK13561 putative diguanylate cyclase; Provisional
Probab=33.82 E-value=2.2e+02 Score=28.70 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHcCCeeEEEeccccH--HHHHHHHHhcCCCCcccccccCcccc---c----HHHHHHHHhcCCeEEE
Q 037896 136 EFEATWAGMEKCLDMGLCRGIGVSNFSS--TKIQRLLDFASVPPATNQVEMHPMWR---Q----SKLREICADNKIHVSA 206 (316)
Q Consensus 136 ~~~~~~~~L~~l~~~G~ir~iGvS~~~~--~~~~~~~~~~~~~~~~~q~~~~~~~~---~----~~~~~~~~~~gi~v~~ 206 (316)
..+.+.+.++.|++.|- .|++.+|+. ..+..+......+++++-+.-+.... + +.++..|+..|+.|++
T Consensus 532 ~~~~~~~~~~~l~~~G~--~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viA 609 (651)
T PRK13561 532 DPHAAVAILRPLRNAGV--RVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIA 609 (651)
T ss_pred CHHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 35678888999999998 688877753 33444433333455555444332211 1 5789999999999988
Q ss_pred e
Q 037896 207 Y 207 (316)
Q Consensus 207 ~ 207 (316)
-
T Consensus 610 e 610 (651)
T PRK13561 610 E 610 (651)
T ss_pred e
Confidence 4
No 108
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=32.67 E-value=1.1e+02 Score=26.16 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=31.3
Q ss_pred CCeeEEEec-cccHHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHh-cCCeEE
Q 037896 151 GLCRGIGVS-NFSSTKIQRLLDFASVPPATNQVEMHPMWRQSKLREICAD-NKIHVS 205 (316)
Q Consensus 151 G~ir~iGvS-~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~gi~v~ 205 (316)
+.++.+||. +-+++.+.++++. ..++++|++-. .....++..++ .++.++
T Consensus 53 ~~i~~VgVf~~~~~~~i~~~~~~--~~~d~vQLHg~---e~~~~~~~l~~~~~~~ii 104 (210)
T PRK01222 53 PFVKVVGVFVNASDEEIDEIVET--VPLDLLQLHGD---ETPEFCRQLKRRYGLPVI 104 (210)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHh--cCCCEEEECCC---CCHHHHHHHHhhcCCcEE
Confidence 568899987 4577888887776 45688898642 12334444444 345443
No 109
>PRK14017 galactonate dehydratase; Provisional
Probab=32.03 E-value=2.2e+02 Score=26.76 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCee-EEEeccccHHHHHHHHHhcCCCCcccccccCcc---cccHHHHHHHHhcCCeEEEecc
Q 037896 141 WAGMEKCLDMGLCR-GIGVSNFSSTKIQRLLDFASVPPATNQVEMHPM---WRQSKLREICADNKIHVSAYSP 209 (316)
Q Consensus 141 ~~~L~~l~~~G~ir-~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~v~~~~p 209 (316)
++.+.+|.++..+. ..|=|-++...+..+++... ++++|+..+.. ....++.+.|+++|+.++.++.
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a--~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGG--VDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCC--CCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 57788888887665 66777888888888887643 46677665443 2236899999999999988654
No 110
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=31.86 E-value=27 Score=30.65 Aligned_cols=55 Identities=20% Similarity=0.090 Sum_probs=31.6
Q ss_pred CCCCccCccceeccccC--------------CChhHHHHHHHHHHHcCCCEEecCCCCCChHHHHHHHHh
Q 037896 9 NCGITIPVLGLGTYSFD--------------NHRETTQLAVHTALKMGYRHFDTAKIYGSEPALGNALAE 64 (316)
Q Consensus 9 ~tg~~vs~lglG~~~~~--------------~~~~~~~~~l~~A~~~Gi~~~DTA~~YgsE~~lG~al~~ 64 (316)
+..-+|.+|++.+...+ ..-+-.......|.+.|++.||.. ||.+|+..=+.|.+
T Consensus 165 ~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~lI~~g-H~~sE~~~~~~l~~ 233 (241)
T PF01784_consen 165 DPDKKVKRVAVCGGSGGSFIEEAAEAGADVYITGDIKYHDAQDAKENGINLIDAG-HYASERPGMEALAE 233 (241)
T ss_dssp CTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEESS--HHHHHHHHHCTSEEEE---HHHHGGHHHHHHHH
T ss_pred CCCCcccEEEEEcccCccHHHHHHhCCCeEEEEccCcHHHHHHHHHCCCEEEEcC-CHHHHHHHHHHHHH
Confidence 56677778777543322 111223445677889999999976 67777664444433
No 111
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=31.80 E-value=1.1e+02 Score=26.50 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=37.1
Q ss_pred HHHHHHHhcC-CeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCCCEEEeC
Q 037896 192 KLREICADNK-IHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQVALKWGLTKGASVIVK 257 (316)
Q Consensus 192 ~~~~~~~~~g-i~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~~~ivg 257 (316)
++.+.|.+.| |+|.++.-|+.+|.+ ..--+..++|.|+.| |++|+...-...|+|
T Consensus 139 ~i~e~~~~~g~iaVHCkaGlGRTG~l----------iAc~lmy~~g~ta~e-aI~~lR~~RpG~V~g 194 (225)
T KOG1720|consen 139 KIVENAEKGGKIAVHCKAGLGRTGTL----------IACYLMYEYGMTAGE-AIAWLRICRPGAVIG 194 (225)
T ss_pred HHHHHHHhcCeEEEEeccCCCchhHH----------HHHHHHHHhCCCHHH-HHHHHHhcCCccccC
Confidence 5677777643 678888888776631 122355679999999 899998865444443
No 112
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=31.50 E-value=4.8e+02 Score=25.12 Aligned_cols=144 Identities=13% Similarity=0.043 Sum_probs=76.0
Q ss_pred CCCCChHHHHHHHHhHhhcCCCCC-CceEEEeccCC-CCCchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCC
Q 037896 50 KIYGSEPALGNALAESILEGTVKR-ENVFVTSKLWG-SDHDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPK 127 (316)
Q Consensus 50 ~~YgsE~~lG~al~~~~~~~~~~R-~~~~I~tK~~~-~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~ 127 (316)
-.||.+.-+-++|++..++. ++ +-++|.|-... .-.+.+..-+++.-++.+ +.++.+|.|......
T Consensus 97 ~V~Gg~~~L~~aI~~~~~~~--~p~~~I~V~~tC~~~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~------- 164 (443)
T TIGR01862 97 IVFGGEKKLKKLIHEAFTEF--PLIKAISVYATCPTGLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVS------- 164 (443)
T ss_pred eeeCcHHHHHHHHHHHHHhC--CccceEEEECCChHHHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCc-------
Confidence 46788888888888765544 33 55666664422 112555555555444544 789999988653211
Q ss_pred ccchhhhHhHHHHHHH-HHHHH--------HcCCeeEEEeccc--cHHHHHHHHHhcCCCCccc--------------cc
Q 037896 128 EEDFEQQLEFEATWAG-MEKCL--------DMGLCRGIGVSNF--SSTKIQRLLDFASVPPATN--------------QV 182 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~-L~~l~--------~~G~ir~iGvS~~--~~~~~~~~~~~~~~~~~~~--------------q~ 182 (316)
.. .-.....++ ++.+. +.++|--||-.++ +.+.+.++++..++++... ..
T Consensus 165 --~~---~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~A 239 (443)
T TIGR01862 165 --QS---KGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHKA 239 (443)
T ss_pred --cc---hHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccC
Confidence 00 012222222 22333 2467888885554 3356777777776544321 11
Q ss_pred ccCccc-cc--HHHHHH-HHhcCCeEEEeccC
Q 037896 183 EMHPMW-RQ--SKLREI-CADNKIHVSAYSPL 210 (316)
Q Consensus 183 ~~~~~~-~~--~~~~~~-~~~~gi~v~~~~pl 210 (316)
.+|+.. +. ...-++ .++.|++++...|+
T Consensus 240 ~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~ 271 (443)
T TIGR01862 240 KLNLVHCARSANYIANELEERYGIPWMKIDFF 271 (443)
T ss_pred CEEEEEChHHHHHHHHHHHHHhCCCeEecccC
Confidence 222221 11 122333 34669999887765
No 113
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=31.29 E-value=3.4e+02 Score=23.25 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCee-EEEeccccHHHHHHHHHhcCCCCcccccccCcc---cccHHHHHHHHhcCCeEEEeccCC
Q 037896 141 WAGMEKCLDMGLCR-GIGVSNFSSTKIQRLLDFASVPPATNQVEMHPM---WRQSKLREICADNKIHVSAYSPLG 211 (316)
Q Consensus 141 ~~~L~~l~~~G~ir-~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~v~~~~pl~ 211 (316)
++.+.+|.+...+. ..+=|.++.+.+..+++.. .++++|+..+.. ....++..+|+++|+.++..+.+.
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~--~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~ 206 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELG--AVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLE 206 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC--CCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCC
Confidence 56677777777665 4455566777776666543 346666665443 222578999999999999877654
No 114
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=31.09 E-value=2.8e+02 Score=22.32 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=68.2
Q ss_pred HHHHHHHHH-HcCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHHHhhCCCccceE
Q 037896 31 TQLAVHTAL-KMGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTLKNLGMEYVDMY 109 (316)
Q Consensus 31 ~~~~l~~A~-~~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~Lg~d~iDl~ 109 (316)
....+.+|+ +.|+..+.+.-.=..|+.+-.|+.+ .-+-+.||+--+ .+...-..+-+.|+..|.+.|= +
T Consensus 28 gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~-------dv~vIgvSsl~g--~h~~l~~~lve~lre~G~~~i~-v 97 (143)
T COG2185 28 GAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE-------DVDVIGVSSLDG--GHLTLVPGLVEALREAGVEDIL-V 97 (143)
T ss_pred chHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc-------CCCEEEEEeccc--hHHHHHHHHHHHHHHhCCcceE-E
Confidence 446777776 7788888766554468888888765 233344444332 2266778888999999987554 2
Q ss_pred eeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHH
Q 037896 110 LVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLD 171 (316)
Q Consensus 110 ~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~ 171 (316)
+.-.. .+. +-++.|++.|--+.++-.+--.+.+..++.
T Consensus 98 ~~GGv--------------------ip~----~d~~~l~~~G~~~if~pgt~~~~~~~~v~~ 135 (143)
T COG2185 98 VVGGV--------------------IPP----GDYQELKEMGVDRIFGPGTPIEEALSDLLT 135 (143)
T ss_pred eecCc--------------------cCc----hhHHHHHHhCcceeeCCCCCHHHHHHHHHH
Confidence 33322 112 227788888988888886665555555444
No 115
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=30.75 E-value=1.6e+02 Score=27.89 Aligned_cols=69 Identities=7% Similarity=0.022 Sum_probs=48.6
Q ss_pred HHHHHHHHHHcCCee-EEEeccccHHHHHHHHHhcCCCCcccccccCcc---cccHHHHHHHHhcCCeEEEeccC
Q 037896 140 TWAGMEKCLDMGLCR-GIGVSNFSSTKIQRLLDFASVPPATNQVEMHPM---WRQSKLREICADNKIHVSAYSPL 210 (316)
Q Consensus 140 ~~~~L~~l~~~G~ir-~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~v~~~~pl 210 (316)
-++.+.+|++...+. +.|-|-++..++..+++... ++++|...... ....++.+.|+++|+.+..++..
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~a--vdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNA--VDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCC--CcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 367788888876665 66767777778888777543 46666665432 22368999999999999887654
No 116
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=29.99 E-value=1.8e+02 Score=27.40 Aligned_cols=87 Identities=11% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCccccc--HHHHHHHHhcCCeEEEeccCCCCCCCCC
Q 037896 141 WAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ--SKLREICADNKIHVSAYSPLGGPGNSWG 218 (316)
Q Consensus 141 ~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~~~G~~~~ 218 (316)
.+++.+|.+.|.+.+|-.---..-.+..+...-.-.|. --|.+...+ +.+++.|+++||.|+.-+-=..
T Consensus 12 ~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~n------ 82 (362)
T PF07287_consen 12 PDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNAGGLN------ 82 (362)
T ss_pred HHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeCCCCC------
Q ss_pred CCCCCCcHHHHHHHHHhCCC
Q 037896 219 STAVVESPVIKSIALKHKAT 238 (316)
Q Consensus 219 ~~~~~~~~~l~~ia~~~~~s 238 (316)
+.-....++++++++|.+
T Consensus 83 --p~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 83 --PAGCADIVREIARELGLS 100 (362)
T ss_pred --HHHHHHHHHHHHHhcCCC
No 117
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=29.99 E-value=1e+02 Score=28.03 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHhhCCCccc--e-EeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeE
Q 037896 88 DDPISALNQTLKNLGMEYVD--M-YLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRG 155 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iD--l-~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~ 155 (316)
+...+.+.+.+++||+. .| . +.=+.| ...+.+++.+.+|+++|.|-.
T Consensus 82 ~~~~~~~~~~l~~lgI~-~Dw~~~~~T~~~--------------------~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 82 EEMSGEHKEDFRRLGIS-YDWSDEYITTEP--------------------EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHhCcc-ccCCCCeECCCH--------------------HHHHHHHHHHHHHHHCCCEEe
Confidence 66778889999999985 33 2 222222 346789999999999999864
No 118
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.85 E-value=2.1e+02 Score=23.89 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhc
Q 037896 137 FEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFA 173 (316)
Q Consensus 137 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~ 173 (316)
+..+++.|-=.++.||+-++|+-|-.--.+-..++..
T Consensus 7 F~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdD 43 (193)
T KOG0077|consen 7 FSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDD 43 (193)
T ss_pred HHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccc
Confidence 5678888888888999999999999877666655543
No 119
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=29.76 E-value=2.2e+02 Score=24.09 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=43.0
Q ss_pred CChhHHHHHHHHHHHcCCCEEecCCCCCC-hHHHH--HHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHHHhhC
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTAKIYGS-EPALG--NALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTLKNLG 102 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Ygs-E~~lG--~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~Lg 102 (316)
.+.++.....+.|.++|..++=|+..|.. -..++ +.+++.++ .+-.+.++. +..+.+.+.+.++..-.|+|
T Consensus 128 l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~v~ik~aG--Gikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 128 LTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GRVGVKAAG--GIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CCceEEEeC--CCCCHHHHHHHHHhChhhcc
Confidence 34677888899999999999999988862 11122 23333211 122333332 33344666666666667776
Q ss_pred C
Q 037896 103 M 103 (316)
Q Consensus 103 ~ 103 (316)
+
T Consensus 202 ~ 202 (203)
T cd00959 202 T 202 (203)
T ss_pred C
Confidence 5
No 120
>PRK10799 metal-binding protein; Provisional
Probab=29.68 E-value=91 Score=27.45 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=16.4
Q ss_pred HHHHHHHcCCCEEecCCCCCChHH
Q 037896 34 AVHTALKMGYRHFDTAKIYGSEPA 57 (316)
Q Consensus 34 ~l~~A~~~Gi~~~DTA~~YgsE~~ 57 (316)
....|.+.|++.+|.. ||.+|..
T Consensus 199 ~~~~A~~~gl~li~~G-H~~sE~~ 221 (247)
T PRK10799 199 TIHSAREQGLHFYAAG-HHATERG 221 (247)
T ss_pred HHHHHHHCCCeEEEcC-chHHHHH
Confidence 3566788888888865 6667766
No 121
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.60 E-value=74 Score=24.00 Aligned_cols=70 Identities=20% Similarity=0.074 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHcCCCEEecCCCCC--ChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCC------------------
Q 037896 28 RETTQLAVHTALKMGYRHFDTAKIYG--SEPALGNALAESILEGTVKRENVFVTSKLWGSDH------------------ 87 (316)
Q Consensus 28 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg--sE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~------------------ 87 (316)
..-..+..--.+++|.=|+-|-..|. .|-.+--.|-+ ..+++++++|+--..+
T Consensus 19 ~a~LYsaYMpfl~nGglFVpTnk~y~iG~evfl~l~lld-------~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e 91 (117)
T COG3215 19 MALLYSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELLD-------FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGE 91 (117)
T ss_pred HHHHHHHHhHHHhcCcEEcccCCccccchhhhhhhhhcC-------chhhccccceEEEEccCCCCCCCCceeeeccCCC
Confidence 33334444455799999999999996 55555444433 4668999999721110
Q ss_pred --chHHHHHHHHHH-hhCCC
Q 037896 88 --DDPISALNQTLK-NLGME 104 (316)
Q Consensus 88 --~~i~~~~~~sL~-~Lg~d 104 (316)
..++.++|.-|- .+|-+
T Consensus 92 ~g~~vr~~IE~~Lg~~igss 111 (117)
T COG3215 92 NGLKVRNQIETLLGGTIGSS 111 (117)
T ss_pred chhhHHHHHHHHHHhhccCC
Confidence 578999998883 44443
No 122
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=29.52 E-value=1.7e+02 Score=29.12 Aligned_cols=45 Identities=9% Similarity=0.074 Sum_probs=37.1
Q ss_pred HhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcc
Q 037896 135 LEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPAT 179 (316)
Q Consensus 135 ~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~ 179 (316)
....++++.+.+.++..+|+.||+-.+....+...++-++++++.
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~ 454 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVG 454 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceee
Confidence 456778889999999999999999999988888888887766433
No 123
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=29.27 E-value=4.7e+02 Score=24.32 Aligned_cols=146 Identities=15% Similarity=0.091 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHH----cCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHH----------
Q 037896 29 ETTQLAVHTALK----MGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISAL---------- 94 (316)
Q Consensus 29 ~~~~~~l~~A~~----~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~---------- 94 (316)
.+|.+++...++ .+.+.|=|-..-=.-.-+++.++..++++. =+++|+|=... . +.+.+++
T Consensus 49 ~~A~~i~~~M~~~~~~~~~~ifL~~tg~misaGlr~~i~~Li~~~~---Vd~iVtTganl-e-hDi~~~l~~~~~G~f~~ 123 (334)
T PRK03971 49 GKAIKIWKKIEEKRKKEEATVFLGYTSNIVSSGLREIIAYLVKEKK---VDVIVTTAGGV-E-EDFIKCLKPFILGEWDV 123 (334)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEEccccccchhHHHHHHHHHHcCC---eeEEEeCCCch-H-HHHHHHhcccccCCCCC
Confidence 467778888885 677765432211134557777877644442 25666664321 1 1222222
Q ss_pred -HHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHH-HHHHHHHH----cCCeeEEEeccccHHHHHH
Q 037896 95 -NQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATW-AGMEKCLD----MGLCRGIGVSNFSSTKIQR 168 (316)
Q Consensus 95 -~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~----~G~ir~iGvS~~~~~~~~~ 168 (316)
+.-|+..|+++|==+++..- ++ ..+++.+ +.++++.+ .++. |++..+..
T Consensus 124 dd~~Lr~~ginRIgnv~ip~e---------------~y---~~~E~~i~~il~~~~~~q~~~~~~-------~s~~e~i~ 178 (334)
T PRK03971 124 DGAELREKGINRIGNIFVPND---------------RY---IEFEEYMYEFFEELLAKQREEGKI-------ITASEFCY 178 (334)
T ss_pred CHHHHHHcCCCccceeeeChH---------------HH---HHHHHHHHHHHHHHHHhhhccCCc-------ccHHHHHH
Confidence 45566666665544444321 11 1233322 34444432 3332 45544432
Q ss_pred HHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEeccCC
Q 037896 169 LLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLG 211 (316)
Q Consensus 169 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 211 (316)
.+-.. + .+ .++ ..++..++.+|.++||+|++=....
T Consensus 179 ~lGk~-i----~~-~~~-~~~e~Sil~~Ayk~~VPIf~Pa~tD 214 (334)
T PRK03971 179 ELGRF-M----DE-KLG-KEKEKSILYWAYKNNIPIFCPAITD 214 (334)
T ss_pred HHHHH-H----hh-hcc-CCccchHHHHHHHcCCCEEcCCcch
Confidence 22110 1 10 111 1234689999999999998855544
No 124
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=29.13 E-value=3.2e+02 Score=24.67 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=64.0
Q ss_pred HHHHHHcCC-eeEEEeccccHHHHHHHHHhcCCC--------------CcccccccCcccccHHHHHHHHhcCCeEEEec
Q 037896 144 MEKCLDMGL-CRGIGVSNFSSTKIQRLLDFASVP--------------PATNQVEMHPMWRQSKLREICADNKIHVSAYS 208 (316)
Q Consensus 144 L~~l~~~G~-ir~iGvS~~~~~~~~~~~~~~~~~--------------~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~ 208 (316)
+..+.+.+. +..++++.-+++....+.+..+++ ++++-+ ..|-....++...|-++|+.|++=+
T Consensus 20 ~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~I-atp~~~H~e~~~~AL~aGkhVl~EK 98 (342)
T COG0673 20 LPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYI-ATPNALHAELALAALEAGKHVLCEK 98 (342)
T ss_pred HHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEE-cCCChhhHHHHHHHHhcCCEEEEcC
Confidence 344444444 788999998888877776655432 111111 1111122578899999999999999
Q ss_pred cCCCCCCCCCCCCCCCcHHHHHHHHHhCC----------CHHHHHHHHhhcCC
Q 037896 209 PLGGPGNSWGSTAVVESPVIKSIALKHKA----------TPAQVALKWGLTKG 251 (316)
Q Consensus 209 pl~~~G~~~~~~~~~~~~~l~~ia~~~~~----------s~~q~al~~~l~~~ 251 (316)
|++. .+...+++.++|++.|+ +|.-..++=.+..+
T Consensus 99 Pla~--------t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~g 143 (342)
T COG0673 99 PLAL--------TLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELIDSG 143 (342)
T ss_pred CCCC--------CHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhcC
Confidence 9986 44455678888888754 45556666666654
No 125
>PRK07945 hypothetical protein; Provisional
Probab=28.97 E-value=4.7e+02 Score=24.18 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHcCCCEEecCCCC
Q 037896 29 ETTQLAVHTALKMGYRHFDTAKIY 52 (316)
Q Consensus 29 ~~~~~~l~~A~~~Gi~~~DTA~~Y 52 (316)
....+++++|.+.|+..+=.++|.
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~ 134 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHS 134 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCC
Confidence 456789999999999988766664
No 126
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=28.97 E-value=6.2e+02 Score=25.61 Aligned_cols=206 Identities=16% Similarity=0.093 Sum_probs=111.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEecCCCCCC-------------hHHHHHHHHhHhhcCCCCCCceEEEeccCCCC-------
Q 037896 27 HRETTQLAVHTALKMGYRHFDTAKIYGS-------------EPALGNALAESILEGTVKRENVFVTSKLWGSD------- 86 (316)
Q Consensus 27 ~~~~~~~~l~~A~~~Gi~~~DTA~~Ygs-------------E~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~------- 86 (316)
+++...++=+..+++|.+.+.|...+.+ +++...+++-. +.- ...+++|+.-+++..
T Consensus 41 ~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lA--r~a-~~~~~~VagsiGP~g~~~~~~~ 117 (612)
T PRK08645 41 HPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLA--REA-AGDDVYVAGTIGPIGGRGPLGD 117 (612)
T ss_pred CHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHH--HHH-hcCCCeEEEeCCCCCCCCCCCC
Confidence 4455555555557999999988765443 12222222211 010 113477887776432
Q ss_pred --CchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcC-CeeEEEecccc-
Q 037896 87 --HDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMG-LCRGIGVSNFS- 162 (316)
Q Consensus 87 --~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvS~~~- 162 (316)
.+.+++...+..+.|.-.-+|++++... ....|+..+++.+++.+ +=-.+.++-..
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~--------------------~~~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~ 177 (612)
T PRK08645 118 ISLEEIRREFREQIDALLEEGVDGLLLETF--------------------YDLEELLLALEAAREKTDLPIIAQVAFHED 177 (612)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcc--------------------CCHHHHHHHHHHHHHhCCCcEEEEEEECCC
Confidence 2667777777777775566999999864 22455555555555555 22234444322
Q ss_pred --------HHHHHHHHHhcCCCCcccccccCc-ccccHHHHHHHHh-cCCeEEEeccCCCCCCC-CCCCCCCCcHHHHHH
Q 037896 163 --------STKIQRLLDFASVPPATNQVEMHP-MWRQSKLREICAD-NKIHVSAYSPLGGPGNS-WGSTAVVESPVIKSI 231 (316)
Q Consensus 163 --------~~~~~~~~~~~~~~~~~~q~~~~~-~~~~~~~~~~~~~-~gi~v~~~~pl~~~G~~-~~~~~~~~~~~l~~i 231 (316)
...+...+.. .+++.+-+++.. ...-..+++.... .++.+.+| |-+ |.. .......
T Consensus 178 g~l~~G~~~~~~~~~~~~--~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vy-pNa--G~~~~~~~~~~-------- 244 (612)
T PRK08645 178 GVTQNGTSLEEALKELVA--AGADVVGLNCGLGPYHMLEALERIPIPENAPLSAY-PNA--GLPEYVDGRYV-------- 244 (612)
T ss_pred CeeCCCCCHHHHHHHHHh--CCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEE-ECC--CCCCCCCCccc--------
Confidence 1222222222 346777888763 2222445544444 35666666 333 321 1111100
Q ss_pred HHHhCCC---HHHHHHHHhhcCCCEEEeCC--CCHHHHHHhhcccC
Q 037896 232 ALKHKAT---PAQVALKWGLTKGASVIVKS--FNEERMRENMASFN 272 (316)
Q Consensus 232 a~~~~~s---~~q~al~~~l~~~~~~ivg~--~~~~~l~enl~a~~ 272 (316)
+..+ .++.+..|.-. |+.+|=|| ++|+|+++.-+.++
T Consensus 245 ---~~~~p~~~~~~~~~~~~~-Ga~iiGGCCgt~P~hI~~la~~l~ 286 (612)
T PRK08645 245 ---YSANPEYFAEYALEFVEQ-GVRLIGGCCGTTPEHIRAMARALK 286 (612)
T ss_pred ---cCCCHHHHHHHHHHHHHh-CCCEEeEecCCCHHHHHHHHHHhc
Confidence 1112 45667778654 77777665 68999888877665
No 127
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=28.93 E-value=3e+02 Score=24.31 Aligned_cols=96 Identities=9% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCccceEeeec---------CCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHH-HHcCCeeEEEecc
Q 037896 91 ISALNQTLKNLGMEYVDMYLVHW---------PVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKC-LDMGLCRGIGVSN 160 (316)
Q Consensus 91 ~~~~~~sL~~Lg~d~iDl~~lH~---------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~~G~ir~iGvS~ 160 (316)
+..+-+.|.++|+++|++-+... |...++ ++.++.+ +..+.++...++.
T Consensus 24 k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~---------------------~e~i~~~~~~~~~~~~~~~~~ 82 (263)
T cd07943 24 VRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTD---------------------EEYLEAAAEALKQAKLGVLLL 82 (263)
T ss_pred HHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCCh---------------------HHHHHHHHHhccCCEEEEEec
Q ss_pred ccHHHHHHHHHhcCCCCcccccccCccccc--HHHHHHHHhcCCeEEEe
Q 037896 161 FSSTKIQRLLDFASVPPATNQVEMHPMWRQ--SKLREICADNKIHVSAY 207 (316)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~~ 207 (316)
+.......+-......++.+.+..+.-... .+.+++++++|+.+...
T Consensus 83 ~~~~~~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 83 PGIGTVDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred CCccCHHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
No 128
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=28.87 E-value=80 Score=24.17 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=24.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEecCCCCC
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTAKIYG 53 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg 53 (316)
.+...+.+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 4566788889999999999999999985
No 129
>PRK06361 hypothetical protein; Provisional
Probab=28.85 E-value=3.5e+02 Score=22.74 Aligned_cols=184 Identities=13% Similarity=0.065 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHcCCCEEecCCCCCC--hH-H---HHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHHHhhCC
Q 037896 30 TTQLAVHTALKMGYRHFDTAKIYGS--EP-A---LGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTLKNLGM 103 (316)
Q Consensus 30 ~~~~~l~~A~~~Gi~~~DTA~~Ygs--E~-~---lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~Lg~ 103 (316)
...++++.|.+.|+..|=.+++... .. . +-+..++. +.. ..=+++...=+.....+.+ ..+.+.+.+++
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~~~--~~i~v~~GiE~~~~~~~~~-~~~~~~~~~~~- 85 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-ELY--WDIEVIPGVELTHVPPKLI-PKLAKKARDLG- 85 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-hhc--CCCEEEEEEEEcccCchhh-chHHHHHHHCC-
Confidence 4678999999999999877777541 11 1 11111111 000 1223444443433332333 33334555554
Q ss_pred CccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccc
Q 037896 104 EYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVE 183 (316)
Q Consensus 104 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~ 183 (316)
.|+..+|......+ ..... . ..+.+.|.+.-+|=-..-...+.+++...++.+.++- .
T Consensus 86 --~~~~svH~~~~~~~---------------~~~~~---~-~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~-~ 143 (212)
T PRK06361 86 --AEIVVVHGETIVEP---------------VEEGT---N-LAAIECEDVDILAHPGLITEEEAELAAENGVFLEITA-R 143 (212)
T ss_pred --CEEEEECCCCcchh---------------hhhhh---H-HHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEEC-C
Confidence 56668995422111 10100 1 3466777765554222111122233333333222221 0
Q ss_pred cCcccccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHH
Q 037896 184 MHPMWRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQVALKW 246 (316)
Q Consensus 184 ~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~ 246 (316)
.+.......+++.|++.|+.++.-|.... +.++...+.+..++++.|.+..++---+
T Consensus 144 ~~~~~~~~~~l~~a~~~gi~vv~~SDaH~------~~d~~~~~~~~~i~~~~gl~~~~v~~~~ 200 (212)
T PRK06361 144 KGHSLTNGHVARIAREAGAPLVINTDTHA------PSDLITYEFARKVALGAGLTEKELEEAL 200 (212)
T ss_pred CCcccchHHHHHHHHHhCCcEEEECCCCC------HHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 11112235799999999999876655442 1233334667777777788777765443
No 130
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.72 E-value=56 Score=25.87 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCeEEEeccCC
Q 037896 191 SKLREICADNKIHVSAYSPLG 211 (316)
Q Consensus 191 ~~~~~~~~~~gi~v~~~~pl~ 211 (316)
.++++.|++.||.|++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 689999999999999998875
No 131
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.68 E-value=3.4e+02 Score=25.54 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=49.0
Q ss_pred HhHHHHHHHHHH-HHHcC---CeeEEEec--cccHHHHHHHHHhcC-CCCcccccccCccccc----------HHHHHHH
Q 037896 135 LEFEATWAGMEK-CLDMG---LCRGIGVS--NFSSTKIQRLLDFAS-VPPATNQVEMHPMWRQ----------SKLREIC 197 (316)
Q Consensus 135 ~~~~~~~~~L~~-l~~~G---~ir~iGvS--~~~~~~~~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~~~~~ 197 (316)
.+++++++++.+ +.+.| +|+++=+. |.+.+.+..+.+... ....++-++||++... ....+..
T Consensus 259 ~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L 338 (368)
T PRK14456 259 YPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRL 338 (368)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHH
Confidence 357788888875 44455 34455444 344555666666543 3455667777776432 3566778
Q ss_pred HhcCCeEEEeccCCC
Q 037896 198 ADNKIHVSAYSPLGG 212 (316)
Q Consensus 198 ~~~gi~v~~~~pl~~ 212 (316)
+++|+.+......+.
T Consensus 339 ~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 339 LDAGLQVTVRKSYGT 353 (368)
T ss_pred HHCCCcEEeeCCCCc
Confidence 888999988877754
No 132
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=28.66 E-value=1.5e+02 Score=28.76 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=63.0
Q ss_pred CCCceEEEeccCCCCCch-----------HHHHHH--HHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHH
Q 037896 72 KRENVFVTSKLWGSDHDD-----------PISALN--QTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFE 138 (316)
Q Consensus 72 ~R~~~~I~tK~~~~~~~~-----------i~~~~~--~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 138 (316)
-+.+++|++-++.....+ |.-.++ ..-+||.+.|+|.. . .+++
T Consensus 165 L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~----a--------------------~~ld 220 (561)
T COG2987 165 LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI----A--------------------ETLD 220 (561)
T ss_pred ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh----c--------------------CCHH
Confidence 688999999987765411 111122 33378889998862 1 3488
Q ss_pred HHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcc--ccccc
Q 037896 139 ATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPAT--NQVEM 184 (316)
Q Consensus 139 ~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~--~q~~~ 184 (316)
+.++..++-.++|+-.+||+-..-.+.+.++++.. +.|++ -|...
T Consensus 221 eAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~-~~pD~vtDQTsa 267 (561)
T COG2987 221 EALALAEEATAAGEPISIGLLGNAAEILPELLRRG-IRPDLVTDQTSA 267 (561)
T ss_pred HHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcC-CCCceecccccc
Confidence 89999999999999999999999888888888764 33333 36554
No 133
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=28.55 E-value=3.1e+02 Score=27.73 Aligned_cols=88 Identities=11% Similarity=0.032 Sum_probs=47.9
Q ss_pred HhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEec-cccHHHHHHHHHhcCCCC
Q 037896 99 KNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVS-NFSSTKIQRLLDFASVPP 177 (316)
Q Consensus 99 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~~~~~~~~~~~~~ 177 (316)
..+|.|++=+++....-+. .+.+.....+.+......++.+||. |-+++.+.++.+. ..+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~-----------------V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~--~~l 80 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRF-----------------VGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK--NGI 80 (610)
T ss_pred HHcCCCEEEEEecCCCCCC-----------------CCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh--cCC
Confidence 5589999998755432111 2233312323332222347789986 6788888888776 556
Q ss_pred cccccccCcccccHHHHHHHHhcCCeEE
Q 037896 178 ATNQVEMHPMWRQSKLREICADNKIHVS 205 (316)
Q Consensus 178 ~~~q~~~~~~~~~~~~~~~~~~~gi~v~ 205 (316)
+++|+.-..-....+.++..++.++.++
T Consensus 81 d~vQLHG~e~~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 81 DFVQLHGAESKAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred CEEEECCCCCcccHHHHHHhhhcCCcEE
Confidence 8888865321111334444444444443
No 134
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=28.46 E-value=4.7e+02 Score=24.05 Aligned_cols=138 Identities=13% Similarity=0.098 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHcCCCEEecCCCCCC---hHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHH-----------
Q 037896 29 ETTQLAVHTALKMGYRHFDTAKIYGS---EPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISAL----------- 94 (316)
Q Consensus 29 ~~~~~~l~~A~~~Gi~~~DTA~~Ygs---E~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~----------- 94 (316)
.+|.+++...++.+-+.|= .|.+ -.-+++.++..++.+. =+++|+|=.... +.+.+++
T Consensus 41 ~~A~~i~~~ml~d~~~ifL---~~tg~mvs~Glr~ii~~Li~~~~---VD~iVtTgani~--hD~~~~lg~~~y~G~~~~ 112 (312)
T PRK01221 41 VRASEILKEMISDADLRFL---SFTANLVSTGLRGLIADLIKRGL---FNVVITTCGTLD--HDIARSFGGVYYKGSFDI 112 (312)
T ss_pred HHHHHHHHHHHcCCCeEEE---EecchhHHHHHHHHHHHHHHcCC---eeEEEeCCCchH--HHHHHHcCCCeEecCCCC
Confidence 4677888888855544332 2321 3337777777654443 366677654321 1222222
Q ss_pred -HHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHH-HHHHHHHHcCCeeEEEeccccHHHHHHHHHh
Q 037896 95 -NQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATW-AGMEKCLDMGLCRGIGVSNFSSTKIQRLLDF 172 (316)
Q Consensus 95 -~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~ 172 (316)
+..|++.|+++|==+++..- ++. ..+++.+ +.++++.++++ .|++..+...+=
T Consensus 113 dd~~Lr~~GinRIgdv~ip~e---------------~y~--~~~E~~i~~il~~~~~~~~-------~~s~~e~i~~lG- 167 (312)
T PRK01221 113 DDAMLKDLGIHRLGNVLIPVE---------------SYG--PLIEKFVRKFLEELYKDKK-------EWSTYELLWEFG- 167 (312)
T ss_pred ChHHHHHcCCCcceeeccChH---------------HHH--HHHHHHHHHHHHHHHhcCC-------CccHHHHHHHHH-
Confidence 56677777777655555321 110 1122222 34555544331 245544433221
Q ss_pred cCCCCcccccccCcccccHHHHHHHHhcCCeEEEeccCC
Q 037896 173 ASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLG 211 (316)
Q Consensus 173 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 211 (316)
+. ++.+..++.+|.++||+|++=....
T Consensus 168 -k~-----------i~~e~Sil~~Ay~~~VPVf~Pa~~D 194 (312)
T PRK01221 168 -KR-----------INDENSILRAAYEKGVPVFVPGIVD 194 (312)
T ss_pred -hh-----------cCCcCcHHHHHHHcCCCEECCCccH
Confidence 10 0124689999999999998755443
No 135
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=28.14 E-value=4.3e+02 Score=23.45 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQ 167 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~ 167 (316)
+...+-.+-..+-+|++.|=|=.+..+...-| +..+++++-++|.++|.+- +=+++-++....
T Consensus 76 ~eAv~~a~lare~~~~~~iKlEVi~d~~~Llp----------------d~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar 138 (248)
T cd04728 76 EEAVRTARLAREALGTDWIKLEVIGDDKTLLP----------------DPIETLKAAEILVKEGFTV-LPYCTDDPVLAK 138 (248)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCcccccc----------------CHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHH
Confidence 44445556677888999888887876654433 3788999999999999974 445666666555
Q ss_pred HHHHh
Q 037896 168 RLLDF 172 (316)
Q Consensus 168 ~~~~~ 172 (316)
++.+.
T Consensus 139 ~l~~~ 143 (248)
T cd04728 139 RLEDA 143 (248)
T ss_pred HHHHc
Confidence 55554
No 136
>PRK06740 histidinol-phosphatase; Validated
Probab=27.97 E-value=4.9e+02 Score=24.04 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=34.2
Q ss_pred HHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCC-ccch---hhhHhHHHHHHHHHHHHHcCCeeEEE
Q 037896 92 SALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPK-EEDF---EQQLEFEATWAGMEKCLDMGLCRGIG 157 (316)
Q Consensus 92 ~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~L~~l~~~G~ir~iG 157 (316)
..+++.|.....||+ +.-+|..+..+-. ... .+.+ ........-++.+.++.+.|.+..||
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~----~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIg 220 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFD----NPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIA 220 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCC----CccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 456667777777877 7788875422110 000 0000 00022355667888888898887776
No 137
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=27.85 E-value=5e+02 Score=24.11 Aligned_cols=142 Identities=13% Similarity=-0.009 Sum_probs=73.0
Q ss_pred hHHHHHHHHHH-HcCCCEEecCCCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHH------------H
Q 037896 29 ETTQLAVHTAL-KMGYRHFDTAKIYGSEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISAL------------N 95 (316)
Q Consensus 29 ~~~~~~l~~A~-~~Gi~~~DTA~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~------------~ 95 (316)
.+|.+++...+ +.+.+.|=|=..-=.-.-++..++..++.+. =+++|+|=... . +.+.+++ +
T Consensus 32 ~~A~~i~~~Ml~d~~~~ifL~~tg~mvsaGlr~~i~~Li~~g~---VD~iVTTgani-~-hD~~~~lg~~~y~g~f~~dd 106 (329)
T PRK00805 32 GESVRVWTEMLKDPDNTIFMGLSGAMVPAGMRKIIKWLIRNRY---VDVLVSTGANI-F-HDIHEALGFKHYKGSHHVDD 106 (329)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeccchHHHHHHHHHHHHHHcCC---eeEEEeCCCch-H-HHHHHHcCCCeeccCCCCCH
Confidence 36778888887 6777755321110024457777877654443 36677775432 1 1222222 5
Q ss_pred HHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHH-HHHHHHHcCCeeEEEeccccHHHHHHHHHhcC
Q 037896 96 QTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWA-GMEKCLDMGLCRGIGVSNFSSTKIQRLLDFAS 174 (316)
Q Consensus 96 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~ 174 (316)
..|++.|+++|==+++.. +++ ...++.+. .|+++.+ ++ .|++..+...+-..
T Consensus 107 ~~Lr~~ginRIgdv~ip~---------------e~y---~~~E~~i~~il~~~~~-~~-------~~s~~e~i~~lGk~- 159 (329)
T PRK00805 107 EELFKEGIDRIYDVFAYE---------------EEF---RKADNLIAEFAETLPG-FK-------SYSSREFLYLLGKW- 159 (329)
T ss_pred HHHHHcCCCcccccccCH---------------HHH---HHHHHHHHHHHHHhcc-CC-------CccHHHHHHHHHHh-
Confidence 566777766654444432 111 12333332 3444432 22 34554443322110
Q ss_pred CCCcccccccCcccccHHHHHHHHhcCCeEEEeccCCC
Q 037896 175 VPPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLGG 212 (316)
Q Consensus 175 ~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 212 (316)
+ .. .+...++.+|.++||+|++=....+
T Consensus 160 i----~~------~~~~Sil~~Ayk~~VPVf~Pa~~Ds 187 (329)
T PRK00805 160 L----NE------KDIDSIVAAAYRANVPIFVPALCDS 187 (329)
T ss_pred h----cc------cCcchHHHHHHHcCCCEEcCCcchh
Confidence 1 00 0346899999999999988555543
No 138
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=27.82 E-value=2.9e+02 Score=26.50 Aligned_cols=67 Identities=6% Similarity=0.068 Sum_probs=41.1
Q ss_pred HHHHHHHHHcC--CeeEEEecc-c-cHHHHHHHHHhcCCCCcccccccCcc---cccHHHHHHHHhcCCeEEEecc
Q 037896 141 WAGMEKCLDMG--LCRGIGVSN-F-SSTKIQRLLDFASVPPATNQVEMHPM---WRQSKLREICADNKIHVSAYSP 209 (316)
Q Consensus 141 ~~~L~~l~~~G--~ir~iGvS~-~-~~~~~~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~v~~~~p 209 (316)
|+.+.+|.+.- .+.-.|=-. . ++..+..+++... .+++|+..+-. ....++...|+++|+.++....
T Consensus 292 ~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a--~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~ 365 (425)
T TIGR01060 292 WEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGV--ANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHR 365 (425)
T ss_pred HHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCC--CCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 56677776664 554433222 2 5788888776633 45566555432 2235789999999998665433
No 139
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.24 E-value=2.9e+02 Score=25.82 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHcC----CeeEEEec--cccHHHHHHHHHhcC-CCCcccccccCccccc----------HHHHHHHH
Q 037896 136 EFEATWAGMEKCLDMG----LCRGIGVS--NFSSTKIQRLLDFAS-VPPATNQVEMHPMWRQ----------SKLREICA 198 (316)
Q Consensus 136 ~~~~~~~~L~~l~~~G----~ir~iGvS--~~~~~~~~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~~~~~~ 198 (316)
+.++++++++.+.+.+ +|+++=+. |.+.+.+.++.+... .+..++-++||++... ....+.++
T Consensus 244 ~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~ 323 (356)
T PRK14455 244 PLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLK 323 (356)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHH
Confidence 4688999999887754 23344333 444566666666543 3456677778776421 24566688
Q ss_pred hcCCeEEEeccCCC
Q 037896 199 DNKIHVSAYSPLGG 212 (316)
Q Consensus 199 ~~gi~v~~~~pl~~ 212 (316)
++|+.+......+.
T Consensus 324 ~~gi~v~ir~~~g~ 337 (356)
T PRK14455 324 KNGVNCTIRREHGT 337 (356)
T ss_pred HCCCcEEEeCCCCc
Confidence 88999988777654
No 140
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=27.18 E-value=9.1e+02 Score=26.93 Aligned_cols=55 Identities=9% Similarity=-0.070 Sum_probs=40.4
Q ss_pred EEEeccccHHHHHHHHHhcCCCCcccccccCcccc-cHHHHHHHHhcCCeEEEecc
Q 037896 155 GIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWR-QSKLREICADNKIHVSAYSP 209 (316)
Q Consensus 155 ~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~gi~v~~~~p 209 (316)
-|-|-+..++.++.+++...-++.+|-+..--... -..+++.|+++|..|+++.-
T Consensus 433 PlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~ 488 (1229)
T PRK09490 433 PIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAF 488 (1229)
T ss_pred eEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEec
Confidence 37888899999999999866556666544322221 24799999999999999853
No 141
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=27.12 E-value=84 Score=26.98 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=25.5
Q ss_pred cccccccCcccccHHHHHHHHhc---CCeEEEeccCCCCCCCC
Q 037896 178 ATNQVEMHPMWRQSKLREICADN---KIHVSAYSPLGGPGNSW 217 (316)
Q Consensus 178 ~~~q~~~~~~~~~~~~~~~~~~~---gi~v~~~~pl~~~G~~~ 217 (316)
.+|.+.+.++...+.++.-+.+. |=.++.|+||...|.+.
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t 150 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFT 150 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeC
Confidence 44555565555556666665533 55688999998766543
No 142
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.12 E-value=2.9e+02 Score=26.32 Aligned_cols=76 Identities=9% Similarity=0.021 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCccccc---HHHHHHHHhcCCeEEEeccCCC
Q 037896 137 FEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ---SKLREICADNKIHVSAYSPLGG 212 (316)
Q Consensus 137 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~ 212 (316)
...+.+.++.+.++.-|....+..-+.+.+.+.+...+.+..++..+-||..+- ..+.+.|+++|+-++.=..++.
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat 190 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT 190 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc
Confidence 556888899998888887777777666555544433346667788888887765 6889999999998988888875
No 143
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=26.92 E-value=3.3e+02 Score=23.65 Aligned_cols=86 Identities=12% Similarity=0.154 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCC---------CHHHHHHHHhhcCC-CEEEeCCCC
Q 037896 191 SKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKA---------TPAQVALKWGLTKG-ASVIVKSFN 260 (316)
Q Consensus 191 ~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~---------s~~q~al~~~l~~~-~~~ivg~~~ 260 (316)
+++.+..++.|+..++++.+.. ......++.+|++.|+ ++.++ +.++ ..+ .++|+.+.+
T Consensus 75 ~~l~~~l~~~gv~~vv~GdI~s---------~~qr~~~e~vc~~~gl~~~~PLW~~d~~~l-~e~i-~~Gf~aiIv~v~~ 143 (222)
T TIGR00289 75 EDLAGQLGELDVEALCIGAIES---------NYQKSRIDKVCRELGLKSIAPLWHADPEKL-MYEV-AEKFEVIIVSVSA 143 (222)
T ss_pred HHHHHHHHHcCCCEEEECcccc---------HHHHHHHHHHHHHcCCEEeccccCCCHHHH-HHHH-HcCCeEEEEEEcc
Confidence 4677777777887777655543 0123566777777654 45555 4654 677 455555443
Q ss_pred HHHHHHhhcccCCcCCHHHHHHHhchhccc
Q 037896 261 EERMRENMASFNIKLDDEDLLQIDNLEERK 290 (316)
Q Consensus 261 ~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~ 290 (316)
..|.+. -+...|+++.+++|.++.+++
T Consensus 144 -~gL~~~--~LGr~id~~~~~~L~~l~~~~ 170 (222)
T TIGR00289 144 -MGLDES--WLGRRIDKECIDDLKRLNEKY 170 (222)
T ss_pred -CCCChH--HcCCccCHHHHHHHHHHHhhc
Confidence 234432 245689999999998876664
No 144
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=26.70 E-value=3.4e+02 Score=21.84 Aligned_cols=94 Identities=14% Similarity=0.068 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCe-eEEEeccccHHHH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLC-RGIGVSNFSSTKI 166 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~i-r~iGvS~~~~~~~ 166 (316)
-.+++.+.+-|+..|-+.+|+= +...++ .+..+.-..+.+.+.+|.. +.|-++.......
T Consensus 10 ~~lK~~l~~~L~~~g~eV~D~G----~~~~~~---------------~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~s 70 (144)
T TIGR00689 10 LELKSEIIEHLKQKGHEVIDCG----TLYDER---------------VDYPDYAKLVADKVVAGEVSLGILICGTGIGMS 70 (144)
T ss_pred HHHHHHHHHHHHHCCCEEEEcC----CCCCCC---------------CChHHHHHHHHHHHHcCCCceEEEEcCCcHHHH
Confidence 4688999999999998888873 221111 2355577788888889988 7788888887766
Q ss_pred HHHHHhcCCCCcccccccCcccccHHHHHHHHh-cCCeEEEec
Q 037896 167 QRLLDFASVPPATNQVEMHPMWRQSKLREICAD-NKIHVSAYS 208 (316)
Q Consensus 167 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~gi~v~~~~ 208 (316)
..+.+..++....+ .+......+++ +|..|++++
T Consensus 71 iaANK~~GIraa~~--------~d~~~A~~ar~hNnaNVl~lG 105 (144)
T TIGR00689 71 IAANKFKGIRAALC--------VDEYTAALARQHNDANVLCLG 105 (144)
T ss_pred HHHhcCCCeEEEEE--------CCHHHHHHHHHhcCCcEEEEC
Confidence 66666555443332 22233444544 467788754
No 145
>TIGR00035 asp_race aspartate racemase.
Probab=26.38 E-value=4.2e+02 Score=22.77 Aligned_cols=82 Identities=10% Similarity=-0.127 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHH-H
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTK-I 166 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~-~ 166 (316)
+.+++-++..-.+.+.++++.+.+++|+..+...... .+++. .....+.+.++.|.+.| +.+|-++-.+... +
T Consensus 17 ~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~---~~~~~--~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~ 90 (229)
T TIGR00035 17 ELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYIL---GRGED--RPRPILIDIAVKLENAG-ADFIIMPCNTAHKFA 90 (229)
T ss_pred HHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHh---cCCcc--hHHHHHHHHHHHHHHcC-CCEEEECCccHHHHH
Confidence 4555556666678899999999999986432110000 00000 23455677777777765 6888887776544 4
Q ss_pred HHHHHhcCC
Q 037896 167 QRLLDFASV 175 (316)
Q Consensus 167 ~~~~~~~~~ 175 (316)
+++.+...+
T Consensus 91 ~~l~~~~~i 99 (229)
T TIGR00035 91 EDIQKAIGI 99 (229)
T ss_pred HHHHHhCCC
Confidence 444443333
No 146
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=26.29 E-value=2e+02 Score=21.33 Aligned_cols=61 Identities=10% Similarity=0.073 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEe
Q 037896 140 TWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAY 207 (316)
Q Consensus 140 ~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~ 207 (316)
+-.+|...++.|++. .|. .+..+.+.....+.+++-.+.+. +..+.+..+|+.++|+++.|
T Consensus 4 ~~~~l~~a~ragkl~-~G~-----~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 4 FNRELRVAVDTGKVI-LGS-----KRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHHHcCCEE-EcH-----HHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 346688888888873 443 44556666555555555544432 33368999999999998776
No 147
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=26.29 E-value=2.6e+02 Score=22.23 Aligned_cols=60 Identities=13% Similarity=-0.017 Sum_probs=34.6
Q ss_pred cCCeeEEEeccccHHH----HHHHHHhcCCCCcccccccCccccc----------HHHHHHHHhcCCeEEEecc
Q 037896 150 MGLCRGIGVSNFSSTK----IQRLLDFASVPPATNQVEMHPMWRQ----------SKLREICADNKIHVSAYSP 209 (316)
Q Consensus 150 ~G~ir~iGvS~~~~~~----~~~~~~~~~~~~~~~q~~~~~~~~~----------~~~~~~~~~~gi~v~~~~p 209 (316)
.=.+...|++..+... +...+...+.+.+++++--|-.... ..+++.+++++..++..++
T Consensus 36 ~~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 36 DVTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGM 109 (177)
T ss_pred CeEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3456677888776543 3333333233344444444432221 4789999999988887654
No 148
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=26.25 E-value=1.3e+02 Score=23.72 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHc
Q 037896 91 ISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDM 150 (316)
Q Consensus 91 ~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 150 (316)
+..+++.|+.+....+|.++++..++.. ....++...++.|.+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~----------------R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLG----------------RNYLKVGLYMEILFPK 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhc----------------cCHHHHHHHHHHHHhh
Confidence 5667777777777788888888876653 2255566677777766
No 149
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=26.22 E-value=49 Score=20.94 Aligned_cols=41 Identities=24% Similarity=0.213 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCCCEEEeCCCCHHHHHHhhcccC
Q 037896 228 IKSIALKHKATPAQVALKWGLTKGASVIVKSFNEERMRENMASFN 272 (316)
Q Consensus 228 l~~ia~~~~~s~~q~al~~~l~~~~~~ivg~~~~~~l~enl~a~~ 272 (316)
+++||+..|+|++.+.-. |+.+ .-++..+.+++.+.++.++
T Consensus 2 i~dIA~~agvS~~TVSr~--ln~~--~~vs~~tr~rI~~~a~~lg 42 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRV--LNGP--PRVSEETRERILEAAEELG 42 (46)
T ss_dssp HHHHHHHHTSSHHHHHHH--HTTC--SSSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHH--HhCC--CCCCHHHHHHHHHHHHHHC
Confidence 678999999999987755 4433 2344456666666665444
No 150
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=26.16 E-value=5.7e+02 Score=24.28 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=30.9
Q ss_pred hhHHHHHHH-HHHHcCCCEEecCCCCC---ChHHHH-HHHHhHhhcCCCCCCceEEEecc
Q 037896 28 RETTQLAVH-TALKMGYRHFDTAKIYG---SEPALG-NALAESILEGTVKRENVFVTSKL 82 (316)
Q Consensus 28 ~~~~~~~l~-~A~~~Gi~~~DTA~~Yg---sE~~lG-~al~~~~~~~~~~R~~~~I~tK~ 82 (316)
-.++.+++. .+++.+.+.|= .|+ .-.-++ ..|+..++.|.+ +++|+|=.
T Consensus 36 L~~A~~il~~~m~~~~~tvfL---tltgamisaGLr~~ii~~LIr~g~V---D~IVTTGA 89 (384)
T PRK00770 36 LREACQLLAQRMIDDGVTVGL---TLSGAMTPAGFGVSALAPLIEAGFI---DWIISTGA 89 (384)
T ss_pred HHHHHHHHHHHHHhcCCcEEE---EeccchhhhhcChHHHHHHHHcCCc---cEEEcCCc
Confidence 346778888 88888888664 343 234477 677776544433 56666633
No 151
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.99 E-value=2.8e+02 Score=28.56 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHc--CCeeEEEeccccHHH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDM--GLCRGIGVSNFSSTK 165 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvS~~~~~~ 165 (316)
+.+++-++.....-.....-+++|+..+.. ....+.+|-+..++ +.+++|.++|.....
T Consensus 107 DdIReLie~~~~~P~~gr~KViIIDEah~L-------------------s~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 107 DEMAQLLDKAVYAPTAGRFKVYMIDEVHML-------------------TNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HHHHHHHHHHHhchhcCCceEEEEEChHhc-------------------CHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 556665555444333445678888866432 23455666666666 899999999986655
Q ss_pred HHHHHHhc
Q 037896 166 IQRLLDFA 173 (316)
Q Consensus 166 ~~~~~~~~ 173 (316)
+..+.+.+
T Consensus 168 lpTIrSRC 175 (700)
T PRK12323 168 PVTVLSRC 175 (700)
T ss_pred hhHHHHHH
Confidence 55555553
No 152
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=25.99 E-value=3.6e+02 Score=23.32 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecccc-------HHHHHHHHHhcCCCCcccccccCccc---------------------
Q 037896 137 FEATWAGMEKCLDMGLCRGIGVSNFS-------STKIQRLLDFASVPPATNQVEMHPMW--------------------- 188 (316)
Q Consensus 137 ~~~~~~~L~~l~~~G~ir~iGvS~~~-------~~~~~~~~~~~~~~~~~~q~~~~~~~--------------------- 188 (316)
...=+++-.+|.++|||+++=+|..+ +..+.+.+...+++...+-+.|--+.
T Consensus 78 y~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftIIt 157 (235)
T COG2949 78 YTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTIIT 157 (235)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEEe
Confidence 44456788899999999999988765 33455555555555444444332221
Q ss_pred c---cHHHHHHHHhcCCeEEEec
Q 037896 189 R---QSKLREICADNKIHVSAYS 208 (316)
Q Consensus 189 ~---~~~~~~~~~~~gi~v~~~~ 208 (316)
| .+..+=.|+.+||.-+++.
T Consensus 158 Q~FHceRAlfiA~~~gIdAic~~ 180 (235)
T COG2949 158 QRFHCERALFIARQMGIDAICFA 180 (235)
T ss_pred cccccHHHHHHHHHhCCceEEec
Confidence 1 1455666777777666644
No 153
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=25.95 E-value=4.6e+02 Score=23.13 Aligned_cols=102 Identities=10% Similarity=0.018 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccccHHHHH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQ 167 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~ 167 (316)
+.+.+..++.++ -|-|+||+=. .|.. ..+......+...+++.. + + -|.|-+++++.++
T Consensus 26 d~~~~~A~~~~~-~GAdiIDIG~--~~~~--------------~~~~ee~~r~v~~i~~~~--~-~-piSIDT~~~~v~e 84 (252)
T cd00740 26 DEALDVARQQVE-GGAQILDLNV--DYGG--------------LDGVSAMKWLLNLLATEP--T-V-PLMLDSTNWEVIE 84 (252)
T ss_pred HHHHHHHHHHHH-CCCCEEEECC--CCCC--------------CCHHHHHHHHHHHHHHhc--C-C-cEEeeCCcHHHHH
Confidence 556666666654 5999999843 1210 001012223333333332 2 2 4889999999999
Q ss_pred HHHHhcCCCCcccccccCcc-cccHHHHHHHHhcCCeEEEeccC
Q 037896 168 RLLDFASVPPATNQVEMHPM-WRQSKLREICADNKIHVSAYSPL 210 (316)
Q Consensus 168 ~~~~~~~~~~~~~q~~~~~~-~~~~~~~~~~~~~gi~v~~~~pl 210 (316)
++++.+.-...+|-+..... .+.+.+++.++++|..++.+..-
T Consensus 85 ~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 85 AGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 99987432233333332111 12367889999999999987543
No 154
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=25.92 E-value=4.9e+02 Score=23.83 Aligned_cols=100 Identities=10% Similarity=-0.042 Sum_probs=0.0
Q ss_pred CccchhhhHhHHHHHHHHHHHHHcCCeeEEEecc---------ccHHHHHHHHHhcCCCCcccccccCccccc--HHHHH
Q 037896 127 KEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSN---------FSSTKIQRLLDFASVPPATNQVEMHPMWRQ--SKLRE 195 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~---------~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~ 195 (316)
+++|.+- .+...+.+.++.+++-|.++.+.+.+ .+.+.+..+.+....-....+.+...-... .+.++
T Consensus 143 SGGDPl~-~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~ 221 (321)
T TIGR03822 143 TGGDPLV-LSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACA 221 (321)
T ss_pred eCCCccc-CCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHH
Q ss_pred HHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHH
Q 037896 196 ICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALK 234 (316)
Q Consensus 196 ~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~ 234 (316)
.+++.|+.+...+++.. | .....+.+.++.+.
T Consensus 222 ~L~~~Gi~v~~q~vLl~-g------vNd~~~~l~~l~~~ 253 (321)
T TIGR03822 222 RLIDAGIPMVSQSVLLR-G------VNDDPETLAALMRA 253 (321)
T ss_pred HHHHcCCEEEEEeeEeC-C------CCCCHHHHHHHHHH
No 155
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=25.86 E-value=1.3e+02 Score=25.69 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=30.6
Q ss_pred EEEeccc-cHHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEE
Q 037896 155 GIGVSNF-SSTKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSA 206 (316)
Q Consensus 155 ~iGvS~~-~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 206 (316)
.||..+. +.++++.+++..- . +-.+|. -+++++++|+++|+.++.
T Consensus 61 ~vGAGTV~~~e~a~~a~~aGA-~-----FivSP~-~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 61 LVGAGTVLTAEQAEAAIAAGA-Q-----FIVSPG-FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp EEEEES--SHHHHHHHHHHT--S-----EEEESS---HHHHHHHHHHTSEEEE
T ss_pred eeEEEeccCHHHHHHHHHcCC-C-----EEECCC-CCHHHHHHHHHcCCcccC
Confidence 5888884 7788888877643 1 223332 236899999999999986
No 156
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=25.84 E-value=5.2e+02 Score=23.68 Aligned_cols=230 Identities=9% Similarity=-0.025 Sum_probs=112.7
Q ss_pred HHHHHHHHHHcCCCEEecCCCCC-ChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHH-HhhCCCccce
Q 037896 31 TQLAVHTALKMGYRHFDTAKIYG-SEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTL-KNLGMEYVDM 108 (316)
Q Consensus 31 ~~~~l~~A~~~Gi~~~DTA~~Yg-sE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL-~~Lg~d~iDl 108 (316)
..++-...+..|.+-=+-|..+| |-..+.+.|++. |+.=+|.-++..+.. .. ..+++.| +++|+..+=+
T Consensus 18 ~~~vA~lYY~~g~tQ~eIA~~lgiSR~~VsRlL~~A-------r~~GiV~I~I~~~~~-~~-~~Le~~L~~~fgLk~~iV 88 (318)
T PRK15418 18 VARIAWFYYHDGLTQSEIGERLGLTRLKVSRLLEKG-------RQSGIIRVQINSRFE-GC-LELENALRQHFSLQHIRV 88 (318)
T ss_pred HHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHH-------HHcCcEEEEEeCCCc-cH-HHHHHHHHHHhCCCEEEE
Confidence 33444445788999999999998 777788888875 444344444433321 11 2244444 6677765433
Q ss_pred EeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccc-cHHHHHHHHHh--cCCCCcccccccC
Q 037896 109 YLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNF-SSTKIQRLLDF--ASVPPATNQVEMH 185 (316)
Q Consensus 109 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~~~~~~~~--~~~~~~~~q~~~~ 185 (316)
+-.++ + ++... .--....+.|.++.+.|.+ ||||-- +...+...+.. ......++|+.=+
T Consensus 89 --vp~~~--~----------~~~~~-~vg~~aA~~L~~~l~~~~~--IGvswG~Tl~~~~~~l~~~~~~~~~~vV~l~Gg 151 (318)
T PRK15418 89 --LPALA--D----------ADIGG-RLGIGAAHMLMSLLQPQQL--LAVGFGEATMNTLQHLSGFISSQQIRLVTLSGG 151 (318)
T ss_pred --EeCCC--c----------ccHHH-HHHHHHHHHHHHhcCCCCE--EEEcchHHHHHHHHhccccCCCCCCEEEEcCCC
Confidence 32211 1 11111 2244566788889999985 888632 22222222211 1123455555322
Q ss_pred cccccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHH-HHHHHHHhCCCHHHHHHHHhhcCCCEEEeCCCCHHHH
Q 037896 186 PMWRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPV-IKSIALKHKATPAQVALKWGLTKGASVIVKSFNEERM 264 (316)
Q Consensus 186 ~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~-l~~ia~~~~~s~~q~al~~~l~~~~~~ivg~~~~~~l 264 (316)
+-..... +..+....-....+.|+ +...+. .+.+.++. +..++.-.| .+-.+.++|..++...
T Consensus 152 ~~~~~~~-~~~~~~~~~~~~l~aP~-----------~v~s~e~~~~l~~e~--~i~~vl~~~--~~~Dial~GIG~~~~~ 215 (318)
T PRK15418 152 VGPYMTG-IGQLDAACSVSIIPAPL-----------RASSAEIARTLRNEN--SVRDVMLAA--QAADVAIVGIGAVNQK 215 (318)
T ss_pred CCcchhh-HHHHhccCCeEEeccCe-----------ecCCHHHHHHHHhCh--HHHHHHHHH--HhCCEEEEEecCCCCC
Confidence 2111111 21121111122333332 222222 33333221 112211111 2226778777776542
Q ss_pred HHhhcccCCcCCHHHHHHHhchhccccccccccccCCC
Q 037896 265 RENMASFNIKLDDEDLLQIDNLEERKIMRGEYLVNETT 302 (316)
Q Consensus 265 ~enl~a~~~~Lt~e~~~~l~~~~~~~~~~~~~~~~~~~ 302 (316)
....-....-+++++++.|.+..---...+.+|+..++
T Consensus 216 ~~s~~~~~g~l~~~~~~~L~~~gAVGdi~g~f~D~~G~ 253 (318)
T PRK15418 216 DDATILRSGYISQGEQLMIGRKGAVGDILGYFFDADGE 253 (318)
T ss_pred CCCceeecCCCCHHHHHHHHHCCceEEEeeeEECCCCC
Confidence 12222222358999999998765555667777776664
No 157
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=25.77 E-value=1.7e+02 Score=24.36 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=33.1
Q ss_pred HHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEecccc
Q 037896 92 SALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNFS 162 (316)
Q Consensus 92 ~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 162 (316)
.+++++|..- .-+|++++...+. ..-.+-++.|+.+..+|++|++-+.-++
T Consensus 67 ~~f~~~L~e~---sn~l~lv~~~~rN-----------------p~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 67 QSFEDALLEA---SNDLLLVSPAIRN-----------------PTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred HHHHHHHHHH---hCceeccChhhcC-----------------chHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 4444444443 3667777755443 2256678999999999999987544443
No 158
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=25.52 E-value=4e+02 Score=22.29 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=15.5
Q ss_pred HHHHHHHHcCCeeEEEeccccHHH
Q 037896 142 AGMEKCLDMGLCRGIGVSNFSSTK 165 (316)
Q Consensus 142 ~~L~~l~~~G~ir~iGvS~~~~~~ 165 (316)
+.+.+......++.+|++.+....
T Consensus 89 ~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 89 AQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred HHHHhhcCCcEEEEEecCChhhHH
Confidence 333333345789999999886544
No 159
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=25.40 E-value=5.3e+02 Score=23.63 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=47.6
Q ss_pred CCCceEEEeccCCCCC-chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHc
Q 037896 72 KRENVFVTSKLWGSDH-DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDM 150 (316)
Q Consensus 72 ~R~~~~I~tK~~~~~~-~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 150 (316)
.++.+.++.|...... ..+.+.+++..+.+| +++.+ ..|... +.....+.++.++.+
T Consensus 22 ~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G---~~v~~-~~~~~~------------------d~~~q~~~i~~li~~ 79 (336)
T PRK15408 22 AAERIAFIPKLVGVGFFTSGGNGAKEAGKELG---VDVTY-DGPTEP------------------SVSGQVQLINNFVNQ 79 (336)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHHHHhC---CEEEE-ECCCCC------------------CHHHHHHHHHHHHHc
Confidence 4678888888754333 778888999999998 44443 334221 134456888888887
Q ss_pred CCeeEEEeccccHHH
Q 037896 151 GLCRGIGVSNFSSTK 165 (316)
Q Consensus 151 G~ir~iGvS~~~~~~ 165 (316)
| +..|-++..++..
T Consensus 80 ~-vdgIiv~~~d~~a 93 (336)
T PRK15408 80 G-YNAIIVSAVSPDG 93 (336)
T ss_pred C-CCEEEEecCCHHH
Confidence 6 7788887666543
No 160
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=25.30 E-value=2.3e+02 Score=24.89 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCC---------HHHHHHHHhhcCC--CEEEeCCC
Q 037896 191 SKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKAT---------PAQVALKWGLTKG--ASVIVKSF 259 (316)
Q Consensus 191 ~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s---------~~q~al~~~l~~~--~~~ivg~~ 259 (316)
.++.++|+++||.+++ +|+.- +.+..+ .++++. ..--.|+++.+.+ ..+-.|++
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd~-------------~s~d~l-~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~s 123 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFDE-------------ESVDFL-EELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMS 123 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-SH-------------HHHHHH-HHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT-
T ss_pred HHHHHHHHHcCCEEEE-CCCCH-------------HHHHHH-HHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCC
Confidence 5799999999999876 46542 222222 333322 1122456666654 66668999
Q ss_pred CHHHHHHhhccc
Q 037896 260 NEERMRENMASF 271 (316)
Q Consensus 260 ~~~~l~enl~a~ 271 (316)
+.+++++.++.+
T Consensus 124 tl~EI~~Av~~~ 135 (241)
T PF03102_consen 124 TLEEIERAVEVL 135 (241)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999888766
No 161
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.27 E-value=67 Score=26.54 Aligned_cols=69 Identities=9% Similarity=0.045 Sum_probs=39.0
Q ss_pred HhHHHHHHHHHHHHHcC-CeeEEEeccccHHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEE
Q 037896 135 LEFEATWAGMEKCLDMG-LCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSA 206 (316)
Q Consensus 135 ~~~~~~~~~L~~l~~~G-~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 206 (316)
.+..+++++|.++++.| +|..+|..+... .+..+.+..+. .+.+..|+-...-+..+..+++.|+.++.
T Consensus 61 ~s~~Dil~al~~a~~~~~~Iavv~~~~~~~-~~~~~~~ll~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 61 ISGFDILRALAKAKKYGPKIAVVGYPNIIP-GLESIEELLGV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp --HHHHHHHHHHCCCCTSEEEEEEESS-SC-CHHHHHHHHT---EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred CCHhHHHHHHHHHHhcCCcEEEEecccccH-HHHHHHHHhCC--ceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 45778899999998776 666666666542 13333333233 33444443222225788899999999877
No 162
>PLN02489 homocysteine S-methyltransferase
Probab=25.20 E-value=5.5e+02 Score=23.74 Aligned_cols=168 Identities=13% Similarity=0.039 Sum_probs=91.2
Q ss_pred CceEEEeccCCCC------------------CchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhH
Q 037896 74 ENVFVTSKLWGSD------------------HDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQL 135 (316)
Q Consensus 74 ~~~~I~tK~~~~~------------------~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~ 135 (316)
.+++|+.-+++.. .+.+.+.....++.|--.-+|++++... .
T Consensus 131 ~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~--------------------~ 190 (335)
T PLN02489 131 RPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETI--------------------P 190 (335)
T ss_pred CCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc--------------------C
Confidence 4578888776432 1456666666677664456999999864 2
Q ss_pred hHHHHHHHHHHHHHcC--CeeEEEeccccH------HHHHHHHHhc--CCCCcccccccCcccccHHHHHHHHhc-CCeE
Q 037896 136 EFEATWAGMEKCLDMG--LCRGIGVSNFSS------TKIQRLLDFA--SVPPATNQVEMHPMWRQSKLREICADN-KIHV 204 (316)
Q Consensus 136 ~~~~~~~~L~~l~~~G--~ir~iGvS~~~~------~~~~~~~~~~--~~~~~~~q~~~~~~~~~~~~~~~~~~~-gi~v 204 (316)
...|+..+++.+++.+ +--.+.++..+. ..+..++... ...++.+-+++.....-..+++..+.. ++.+
T Consensus 191 ~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl 270 (335)
T PLN02489 191 NKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCTPPRFIHGLILSIRKVTSKPI 270 (335)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHhhcCCcE
Confidence 2555666666666654 444555553211 1122333221 124567777775322224566665554 6777
Q ss_pred EEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCC---HHHHHHHHhhcCCCEEEeCC--CCHHHHHHhhcccC
Q 037896 205 SAYSPLGGPGNSWGSTAVVESPVIKSIALKHKAT---PAQVALKWGLTKGASVIVKS--FNEERMRENMASFN 272 (316)
Q Consensus 205 ~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s---~~q~al~~~l~~~~~~ivg~--~~~~~l~enl~a~~ 272 (316)
++| |-+ |..+....-... ..+..+ .++.+.+|.- .++.+|=|+ ++|+||++.-+.++
T Consensus 271 ~vy-PNa--G~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~Ga~iIGGCCgt~P~hI~al~~~l~ 332 (335)
T PLN02489 271 VVY-PNS--GETYDGEAKEWV-------ESTGVSDEDFVSYVNKWRD-AGASLIGGCCRTTPNTIRAISKALS 332 (335)
T ss_pred EEE-CCC--CCCCCCccCccc-------CCCCCCHHHHHHHHHHHHH-CCCcEEeeCCCCCHHHHHHHHHHHh
Confidence 766 444 333321110000 012223 4566777864 477777665 68999998776554
No 163
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=25.15 E-value=1.6e+02 Score=27.10 Aligned_cols=20 Identities=5% Similarity=-0.026 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcCCeeEE
Q 037896 137 FEATWAGMEKCLDMGLCRGI 156 (316)
Q Consensus 137 ~~~~~~~L~~l~~~G~ir~i 156 (316)
..+.++.|..++++|||+++
T Consensus 291 ~~k~ld~l~~~ikegKI~y~ 310 (343)
T KOG1196|consen 291 YPKFLDFLLPYIKEGKITYV 310 (343)
T ss_pred hHHHHHHHHHHHhcCceEEe
Confidence 56788999999999999987
No 164
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=24.96 E-value=4.7e+02 Score=22.92 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHc-CCeeEEEeccccHHHHH
Q 037896 89 DPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDM-GLCRGIGVSNFSSTKIQ 167 (316)
Q Consensus 89 ~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvS~~~~~~~~ 167 (316)
.-+..+-+.|.++|+++|++-+ |... +.-++.++.+.+. ..++..+.+..+.+.++
T Consensus 20 ~~k~~i~~~L~~~Gv~~iE~g~---p~~~--------------------~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~ 76 (259)
T cd07939 20 EEKLAIARALDEAGVDEIEVGI---PAMG--------------------EEEREAIRAIVALGLPARLIVWCRAVKEDIE 76 (259)
T ss_pred HHHHHHHHHHHHcCCCEEEEec---CCCC--------------------HHHHHHHHHHHhcCCCCEEEEeccCCHHHHH
Confidence 3445666779999999999852 3211 1124556666653 34777777767777787
Q ss_pred HHHHhcCCCCcccccccCccc------c--c------HHHHHHHHhcCCeEEEecc
Q 037896 168 RLLDFASVPPATNQVEMHPMW------R--Q------SKLREICADNKIHVSAYSP 209 (316)
Q Consensus 168 ~~~~~~~~~~~~~q~~~~~~~------~--~------~~~~~~~~~~gi~v~~~~p 209 (316)
.+.+. +++..-+-+..|..+ . + .+.+++|+++|+.+....+
T Consensus 77 ~a~~~-g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 77 AALRC-GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred HHHhC-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 76654 222111111122221 1 0 3678899999997764333
No 165
>PLN02389 biotin synthase
Probab=24.78 E-value=6e+02 Score=24.01 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=57.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEecCCC-C--CCh----HHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHH
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTAKI-Y--GSE----PALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTL 98 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA~~-Y--gsE----~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL 98 (316)
.+.++..+.++.+.+.|++.|--... . +.+ ..+-+.++.. +...+.|+...+..+ +..-+.|
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i------k~~~l~i~~s~G~l~-----~E~l~~L 184 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI------RGMGMEVCCTLGMLE-----KEQAAQL 184 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH------hcCCcEEEECCCCCC-----HHHHHHH
Confidence 46778888888889999998753211 1 122 2455566653 222344554444332 3333445
Q ss_pred HhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCC
Q 037896 99 KNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGL 152 (316)
Q Consensus 99 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ 152 (316)
+..|+|++-. +.+.. +. .+ .+......+++.++.++.+++.|.
T Consensus 185 keAGld~~~~----~LeTs-~~--~y----~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 185 KEAGLTAYNH----NLDTS-RE--YY----PNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHcCCCEEEe----eecCC-hH--Hh----CCcCCCCCHHHHHHHHHHHHHcCC
Confidence 6668776433 33211 10 00 011111357888999999999985
No 166
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=24.54 E-value=1.3e+02 Score=27.80 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCH---------HHHHHHHhhcC--CCEEEeCCC
Q 037896 191 SKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATP---------AQVALKWGLTK--GASVIVKSF 259 (316)
Q Consensus 191 ~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~---------~q~al~~~l~~--~~~~ivg~~ 259 (316)
.++.++|++.||.++. +||.. . -..+..+.+++. --=.|.|+.+. |...-.|+.
T Consensus 93 ~~Lke~a~~~Gi~~~S-SPfd~-~-------------svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma 157 (347)
T COG2089 93 AQLKEYARKRGIIFFS-SPFDL-T-------------AVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMA 157 (347)
T ss_pred HHHHHHHHHcCeEEEe-cCCCH-H-------------HHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccc
Confidence 5899999999998865 68764 1 112222222111 01134555553 466667889
Q ss_pred CHHHHHHhhccc
Q 037896 260 NEERMRENMASF 271 (316)
Q Consensus 260 ~~~~l~enl~a~ 271 (316)
+.+++.+.++.+
T Consensus 158 ~~~ei~~av~~~ 169 (347)
T COG2089 158 TIEEIEEAVAIL 169 (347)
T ss_pred cHHHHHHHHHHH
Confidence 988888777543
No 167
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=24.48 E-value=5.5e+02 Score=23.54 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=66.1
Q ss_pred HHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCee-EEEeccc---cHHHHHHHH
Q 037896 95 NQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCR-GIGVSNF---SSTKIQRLL 170 (316)
Q Consensus 95 ~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~---~~~~~~~~~ 170 (316)
++..++.| .|++.||-... +|. ..+ .+..+..+.|+++.+.=++- .||=|.. +++.++++.
T Consensus 157 rk~Vk~fg---admvTiHlIsT-dPk----------i~D-~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaA 221 (403)
T COG2069 157 RKCVKKFG---ADMVTIHLIST-DPK----------IKD-TPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAA 221 (403)
T ss_pred HHHHHHhC---CceEEEEeecC-Ccc----------ccC-CCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHH
Confidence 44556677 56777776433 221 111 55788889999998887765 4577765 467788888
Q ss_pred HhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEeccCCC
Q 037896 171 DFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLGG 212 (316)
Q Consensus 171 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 212 (316)
+.+.-. .+.....|+-..-+.+.+.|.++|=.|++|+++.-
T Consensus 222 EvaEGe-RclLaSanldlDy~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 222 EVAEGE-RCLLASANLDLDYERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred HhhcCc-eEEeeccccccCHHHHHHHHHhcCceEEEeeccCh
Confidence 776522 12222233322236899999999999999999863
No 168
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=24.42 E-value=3.1e+02 Score=26.01 Aligned_cols=140 Identities=17% Similarity=0.200 Sum_probs=66.8
Q ss_pred CCCCCCCCCC---ccchhhhHhHHHHHHHHHHHHHcCCeeEEEecc-----cc-----HHHHHHHHHhc-CCCCcccccc
Q 037896 118 KPWTCYPVPK---EEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSN-----FS-----STKIQRLLDFA-SVPPATNQVE 183 (316)
Q Consensus 118 ~~~~~~~~~~---~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~-----~~-----~~~~~~~~~~~-~~~~~~~q~~ 183 (316)
.|..|.++.. ...+.. .+.+.+++.++.+++.| ++.|-+.. +. ...+.++++.. ..+. ...+.
T Consensus 148 Cp~~CsfC~~~~~~g~~r~-r~~e~I~~Ei~~l~~~g-~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~-~~~ir 224 (414)
T TIGR01579 148 CNFFCSYCIIPFARGRSRS-VPMEAILKQVKILVAKG-YKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPG-IKRIR 224 (414)
T ss_pred cCCCCCCCceeeecCCCcc-CCHHHHHHHHHHHHHCC-CceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCC-CcEEE
Confidence 3445666543 122333 77899999999999987 45554421 22 11233343321 1111 11122
Q ss_pred c---CcccccHHHHHHHHhcC-CeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHHhhc--CC----CE
Q 037896 184 M---HPMWRQSKLREICADNK-IHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQVALKWGLT--KG----AS 253 (316)
Q Consensus 184 ~---~~~~~~~~~~~~~~~~g-i~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~--~~----~~ 253 (316)
+ ++-.-.+++++..++.+ +-....-++-. | .++.++.+.+.+......-+++.+.+ .+ ..
T Consensus 225 ~~~~~p~~~~~ell~~m~~~~~~~~~l~lglES-g---------s~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~ 294 (414)
T TIGR01579 225 LSSIDPEDIDEELLEAIASEKRLCPHLHLSLQS-G---------SDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTD 294 (414)
T ss_pred EeCCChhhCCHHHHHHHHhcCccCCCeEECCCc-C---------ChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeee
Confidence 2 23223468899988765 32223334443 3 12334444333322223334444444 33 34
Q ss_pred EEeCC--CCHHHHHHhhcc
Q 037896 254 VIVKS--FNEERMRENMAS 270 (316)
Q Consensus 254 ~ivg~--~~~~~l~enl~a 270 (316)
.|+|. .+.+.+++.++.
T Consensus 295 ~IvG~PgET~ed~~~tl~~ 313 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRM 313 (414)
T ss_pred EEEECCCCCHHHHHHHHHH
Confidence 56663 466666655543
No 169
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=24.34 E-value=5.7e+02 Score=23.65 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=20.5
Q ss_pred CChhHHHHHHHHHHHcCCCEEecC
Q 037896 26 NHRETTQLAVHTALKMGYRHFDTA 49 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi~~~DTA 49 (316)
.+.++..++++..-++||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 456788889999899999999984
No 170
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=24.29 E-value=4.9e+02 Score=22.86 Aligned_cols=101 Identities=13% Similarity=0.180 Sum_probs=58.7
Q ss_pred HHHHHHHHH-----HHHHcCCeeEEEeccccH-------HHHHHHHHhcC-CCC-cccccccCccccc-----HHHHHHH
Q 037896 137 FEATWAGME-----KCLDMGLCRGIGVSNFSS-------TKIQRLLDFAS-VPP-ATNQVEMHPMWRQ-----SKLREIC 197 (316)
Q Consensus 137 ~~~~~~~L~-----~l~~~G~ir~iGvS~~~~-------~~~~~~~~~~~-~~~-~~~q~~~~~~~~~-----~~~~~~~ 197 (316)
+.+.|+.|. +..+.|.--+++|.-|+. ..+.++.+... ... .+-.+-+...... ..-++.|
T Consensus 44 ~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA 123 (254)
T COG1099 44 YLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELA 123 (254)
T ss_pred HHHHHHHHHccchhhHHhhCceeeEEeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHH
Confidence 445555544 346678888888877752 23333333322 111 1123333333332 4578999
Q ss_pred HhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHH
Q 037896 198 ADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQVALK 245 (316)
Q Consensus 198 ~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~ 245 (316)
++.+++++.+.|-.. +...-+...+++.+.|..+.++.+.
T Consensus 124 ~e~dvPviVHTPr~n--------K~e~t~~ildi~~~~~l~~~lvvID 163 (254)
T COG1099 124 RELDVPVIVHTPRRN--------KKEATSKILDILIESGLKPSLVVID 163 (254)
T ss_pred HHcCCcEEEeCCCCc--------chhHHHHHHHHHHHcCCChhheehh
Confidence 999999999999764 2222356677777888777665543
No 171
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=24.20 E-value=60 Score=25.81 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=11.9
Q ss_pred HHHHHHHHcCCCEEec
Q 037896 33 LAVHTALKMGYRHFDT 48 (316)
Q Consensus 33 ~~l~~A~~~Gi~~~DT 48 (316)
..+...++.|||+||-
T Consensus 30 ~~i~~QL~~GiR~lDl 45 (146)
T PF00388_consen 30 WSIREQLESGIRYLDL 45 (146)
T ss_dssp HHHHHHHHTT--EEEE
T ss_pred HhHHHHHhccCceEEE
Confidence 5788899999999984
No 172
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=24.17 E-value=3.4e+02 Score=21.32 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=42.5
Q ss_pred CCCceEEEeccCCCCC-chHHHHHHHHHHhhCC----CccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHH
Q 037896 72 KRENVFVTSKLWGSDH-DDPISALNQTLKNLGM----EYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEK 146 (316)
Q Consensus 72 ~R~~~~I~tK~~~~~~-~~i~~~~~~sL~~Lg~----d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 146 (316)
.|=.+.|+-|++.... ..+++.+.++++.+.. ...|++++-.+...+ .+..++.+.|+.
T Consensus 47 ~RvG~~VSKKvG~AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~----------------~~~~~l~~~L~~ 110 (129)
T PRK01313 47 PRVGFTVTKKNGNAVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALN----------------APFSQLTEELSR 110 (129)
T ss_pred cEEEEEEecccCcchHHHHHHHHHHHHHHHhchhccCCCceEEEEECccccc----------------CCHHHHHHHHHH
Confidence 5667888888765332 7788888888887653 458999999885432 335556666665
Q ss_pred HHH
Q 037896 147 CLD 149 (316)
Q Consensus 147 l~~ 149 (316)
+.+
T Consensus 111 ~l~ 113 (129)
T PRK01313 111 RIE 113 (129)
T ss_pred HHH
Confidence 554
No 173
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=23.97 E-value=4.1e+02 Score=21.81 Aligned_cols=88 Identities=8% Similarity=-0.062 Sum_probs=49.9
Q ss_pred CeeEEEeccccHHHHH------HHHHhc-CCCCcccccccCcccc-------c--------HHHHHHHHhcCCeEEEecc
Q 037896 152 LCRGIGVSNFSSTKIQ------RLLDFA-SVPPATNQVEMHPMWR-------Q--------SKLREICADNKIHVSAYSP 209 (316)
Q Consensus 152 ~ir~iGvS~~~~~~~~------~~~~~~-~~~~~~~q~~~~~~~~-------~--------~~~~~~~~~~gi~v~~~~p 209 (316)
.|...|++..+..++. .++... ..+.+++++-.|-... . ..+++.++++|..++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 6667799888765432 333322 2334445554443222 1 4689999999999998887
Q ss_pred CCCCCCC----CCCCCCCCcHHHHHHHHHhCCCH
Q 037896 210 LGGPGNS----WGSTAVVESPVIKSIALKHKATP 239 (316)
Q Consensus 210 l~~~G~~----~~~~~~~~~~~l~~ia~~~~~s~ 239 (316)
....... ....-..-.+.++++|+++|+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 116 VTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred ccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 6531100 00000111367888899988763
No 174
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=23.65 E-value=6.3e+02 Score=23.91 Aligned_cols=73 Identities=11% Similarity=0.026 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHhcCCCCcccccccCccccc---HHHHHHHHhcCCeEEEeccCCC
Q 037896 139 ATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQ---SKLREICADNKIHVSAYSPLGG 212 (316)
Q Consensus 139 ~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~ 212 (316)
.++..++.+.+.+.++.+-+...+.+.+++++.. +.+..++..+-||.-.- +++.+.|+++|+.++.=..++.
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 3455555555555566666655566666665531 23334444444554322 6899999999999887666553
No 175
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=23.55 E-value=1.6e+02 Score=27.88 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHcC-CeeEEEecccc---HHHHHHHHHhcCCCCcccccccCccccc-------HHHHHHHHhcCCeE
Q 037896 136 EFEATWAGMEKCLDMG-LCRGIGVSNFS---STKIQRLLDFASVPPATNQVEMHPMWRQ-------SKLREICADNKIHV 204 (316)
Q Consensus 136 ~~~~~~~~L~~l~~~G-~ir~iGvS~~~---~~~~~~~~~~~~~~~~~~q~~~~~~~~~-------~~~~~~~~~~gi~v 204 (316)
....+++.+..|..+| .|.|+.|.... ++++.++++- +...+.....+.+ +++-+.|+++|+.+
T Consensus 100 EH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~-----~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~f 174 (386)
T COG1104 100 EHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRP-----DTILVSIMHANNETGTIQPIAEIGEICKERGILF 174 (386)
T ss_pred ccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCC-----CceEEEEEecccCeeecccHHHHHHHHHHcCCeE
Confidence 3556889999997888 89999998765 4555555542 2332222222222 68999999999766
Q ss_pred EE
Q 037896 205 SA 206 (316)
Q Consensus 205 ~~ 206 (316)
..
T Consensus 175 Hv 176 (386)
T COG1104 175 HV 176 (386)
T ss_pred EE
Confidence 54
No 176
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.22 E-value=2.7e+02 Score=24.99 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=30.4
Q ss_pred HhHHHHHHHHHHHHHcCCeeEEEeccccHHHHHHHHHh
Q 037896 135 LEFEATWAGMEKCLDMGLCRGIGVSNFSSTKIQRLLDF 172 (316)
Q Consensus 135 ~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~~~~~~~~ 172 (316)
...+-+-++.-+++++|. .|=+|+|..++++++++.
T Consensus 164 VN~elLk~~I~~lk~~Ga--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 164 VNVELLKDAIFELKEEGA--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred hhHHHHHHHHHHHHhcCC--EEEEecchHHHHHHHhhh
Confidence 345666688899999999 599999999999999876
No 177
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=23.12 E-value=4.7e+02 Score=24.09 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=13.3
Q ss_pred CChhHHHHHHHHHHHcCC
Q 037896 26 NHRETTQLAVHTALKMGY 43 (316)
Q Consensus 26 ~~~~~~~~~l~~A~~~Gi 43 (316)
.+.+++...+..+++.+.
T Consensus 51 ~~~~~~~~~~~~~~~~~~ 68 (327)
T PRK02901 51 YDPAEAAAWLASAIEAAY 68 (327)
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 556677788888887765
No 178
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.72 E-value=2.5e+02 Score=24.14 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCC---eeEEEeccc-cHHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEE
Q 037896 140 TWAGMEKCLDMGL---CRGIGVSNF-SSTKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSA 206 (316)
Q Consensus 140 ~~~~L~~l~~~G~---ir~iGvS~~-~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 206 (316)
..+.+++++++-. =-.||..+. ++++++.+.+... . +-.+|. -..+++++|+++|+.++.
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA-~-----FivsP~-~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA-Q-----FIVSPS-FNRETAKICNLYQIPYLP 114 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC-C-----EEECCC-CCHHHHHHHHHcCCCEEC
Confidence 4456666665421 125898884 7788888877543 2 223332 236899999999998875
No 179
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.70 E-value=5.5e+02 Score=23.74 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHc-CC---eeEEEec--cccHHHHHHHHHhcC-CCCcccccccCccccc---------HHHHHHHHh
Q 037896 136 EFEATWAGMEKCLDM-GL---CRGIGVS--NFSSTKIQRLLDFAS-VPPATNQVEMHPMWRQ---------SKLREICAD 199 (316)
Q Consensus 136 ~~~~~~~~L~~l~~~-G~---ir~iGvS--~~~~~~~~~~~~~~~-~~~~~~q~~~~~~~~~---------~~~~~~~~~ 199 (316)
+++++++.+..+.+. |. ++++=+. |.+.+.+.++.+..+ .+..++-++||+.... ....+..++
T Consensus 233 ~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~~~~~~ps~e~l~~f~~~l~~ 312 (343)
T PRK14469 233 SIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTVPGLEKPSRERIERFKEILLK 312 (343)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCCccCCCCCHHHHHHHHHHHHH
Confidence 577888888877765 32 4455554 455567777666543 3445666778875421 245667788
Q ss_pred cCCeEEEeccCCC
Q 037896 200 NKIHVSAYSPLGG 212 (316)
Q Consensus 200 ~gi~v~~~~pl~~ 212 (316)
+|+.+......+.
T Consensus 313 ~gi~vtvr~~~g~ 325 (343)
T PRK14469 313 NGIEAEIRREKGS 325 (343)
T ss_pred CCCeEEEeCCCCc
Confidence 8999988766543
No 180
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=22.57 E-value=7.1e+02 Score=24.06 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=76.6
Q ss_pred CCCCCCCCCC-----ccchhhhHhHHHHHHHHHHHHHcC-CeeEEEec--cc--cHHHHHHHHHhc---CCCCccccccc
Q 037896 118 KPWTCYPVPK-----EEDFEQQLEFEATWAGMEKCLDMG-LCRGIGVS--NF--SSTKIQRLLDFA---SVPPATNQVEM 184 (316)
Q Consensus 118 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvS--~~--~~~~~~~~~~~~---~~~~~~~q~~~ 184 (316)
.|..|.++.. ...+.. .+.+.+++.++.+++.. .++.|-+. ++ +...+.++++.. ++... .+..
T Consensus 206 Cp~~C~FC~~~~~~~g~~~r~-rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~-~~~~- 282 (472)
T TIGR03471 206 CPSKCTFCLWPQTVGGHRYRT-RSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWS-CNAR- 282 (472)
T ss_pred CCCCCCCCCCCccCCCCceEe-CCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEE-EEec-
Confidence 4555666642 112222 66889999999999874 46655543 33 234444443322 22111 1111
Q ss_pred CcccccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCC----CEEEeCC--
Q 037896 185 HPMWRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQVALKWGLTKG----ASVIVKS-- 258 (316)
Q Consensus 185 ~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~----~~~ivg~-- 258 (316)
..-..++++..++.|+..+..+.=.+ ..+.++.+.+.+...-..-+++++...+ ...|+|.
T Consensus 283 --~~~~~e~l~~l~~aG~~~v~iGiES~-----------s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPg 349 (472)
T TIGR03471 283 --ANVDYETLKVMKENGLRLLLVGYESG-----------DQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPG 349 (472)
T ss_pred --CCCCHHHHHHHHHcCCCEEEEcCCCC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCC
Confidence 12247899999999988766554432 2344555533322222334666666666 4567774
Q ss_pred CCHHHHHHhhccc
Q 037896 259 FNEERMRENMASF 271 (316)
Q Consensus 259 ~~~~~l~enl~a~ 271 (316)
.+.+.+.+.++.+
T Consensus 350 et~e~~~~ti~~~ 362 (472)
T TIGR03471 350 ETRETIRKTIDFA 362 (472)
T ss_pred CCHHHHHHHHHHH
Confidence 6888888777643
No 181
>PLN00191 enolase
Probab=22.52 E-value=7.3e+02 Score=24.18 Aligned_cols=69 Identities=6% Similarity=0.036 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCeeEEE-ec-cccHHHHHHHHHhcCCCCcccccccCcc---cccHHHHHHHHhcCCeEEEeccC
Q 037896 140 TWAGMEKCLDMGLCRGIG-VS-NFSSTKIQRLLDFASVPPATNQVEMHPM---WRQSKLREICADNKIHVSAYSPL 210 (316)
Q Consensus 140 ~~~~L~~l~~~G~ir~iG-vS-~~~~~~~~~~~~~~~~~~~~~q~~~~~~---~~~~~~~~~~~~~gi~v~~~~pl 210 (316)
-|+.+.+|.+..++.-+| =+ ..++..+.++++... .+++++..+-. ....++++.|+++|+.++.....
T Consensus 324 D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~a--ad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrs 397 (457)
T PLN00191 324 DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKA--CNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRS 397 (457)
T ss_pred cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCC--CCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCC
Confidence 367788888888887666 22 255777777776633 34555554432 22368999999999999875433
No 182
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=22.38 E-value=5.9e+02 Score=23.07 Aligned_cols=150 Identities=19% Similarity=0.162 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCCEEecCCCCCC---hHHHHHHHHhHhhc--CC-CCCC-ceEEEeccCCCCCchHHHHHHHHHHhhCC
Q 037896 31 TQLAVHTALKMGYRHFDTAKIYGS---EPALGNALAESILE--GT-VKRE-NVFVTSKLWGSDHDDPISALNQTLKNLGM 103 (316)
Q Consensus 31 ~~~~l~~A~~~Gi~~~DTA~~Ygs---E~~lG~al~~~~~~--~~-~~R~-~~~I~tK~~~~~~~~i~~~~~~sL~~Lg~ 103 (316)
..+.++++.+ |.....+...|+. ...+-+++.+++.+ +. ...+ .+++++ .....+...+.-+..
T Consensus 20 ~~~~~~~~~~-~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~--------G~~~~~~~~~~~~~~ 90 (363)
T PF00155_consen 20 PPAAIKAAIR-GAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTS--------GAQAALFLLLRLLKI 90 (363)
T ss_dssp HHHHHHHHHH-HHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEES--------HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHH-HhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEec--------ccccchhhhhhcccc
Confidence 3444444444 3333444457772 34445555444320 11 1345 555554 234444444444424
Q ss_pred CccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEec-----cccHHHHHHHHHhc-----
Q 037896 104 EYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVS-----NFSSTKIQRLLDFA----- 173 (316)
Q Consensus 104 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS-----~~~~~~~~~~~~~~----- 173 (316)
+.-|-+++..|... ...+.++.+ ...+..+-+. ..+.+.+.+.++..
T Consensus 91 ~~~~~vlv~~P~y~---------------------~~~~~~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 147 (363)
T PF00155_consen 91 NPGDTVLVPDPCYP---------------------SYIEAARLL--GAEVIPVPLDSENDFHLDPEALEEALDELPSKGP 147 (363)
T ss_dssp STTSEEEEEESSST---------------------HHHHHHHHT--TSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTE
T ss_pred cccccceecCCccc---------------------ccccccccc--Cceeeecccccccccccccccccccccccccccc
Confidence 45677888877432 122222222 2334455543 56778888877764
Q ss_pred CCCCcccccccCccccc------HHHHHHHHhcCCeEEEeccCCC
Q 037896 174 SVPPATNQVEMHPMWRQ------SKLREICADNKIHVSAYSPLGG 212 (316)
Q Consensus 174 ~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~v~~~~pl~~ 212 (316)
+....++-...||.-.. .+++++|+++|+-++.=...+.
T Consensus 148 ~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~ 192 (363)
T PF00155_consen 148 RPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSD 192 (363)
T ss_dssp TEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTT
T ss_pred ccceeeecccccccccccccccccchhhhhcccccceeeeeceec
Confidence 12233333344443221 4678889999999987666553
No 183
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=22.12 E-value=1.1e+02 Score=22.55 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEeccc
Q 037896 91 ISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVSNF 161 (316)
Q Consensus 91 ~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS~~ 161 (316)
...+-.=|.+.|.||.=.+.-..- .+.+++.+.+++|.+.|.|..+.=+.-
T Consensus 9 ~~~IL~hl~~~~~Dy~k~ia~~l~--------------------~~~~~v~~~l~~Le~~GLler~~g~~i 59 (92)
T PF10007_consen 9 DLKILQHLKKAGPDYAKSIARRLK--------------------IPLEEVREALEKLEEMGLLERVEGKTI 59 (92)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHC--------------------CCHHHHHHHHHHHHHCCCeEEecCccc
Confidence 344555567777777655443321 568999999999999999998875533
No 184
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=22.06 E-value=7.2e+02 Score=23.96 Aligned_cols=121 Identities=9% Similarity=0.027 Sum_probs=63.8
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCC---C--ccchhhhHhHHHHHHHHHHHHH-----cCCeeEEE
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVP---K--EEDFEQQLEFEATWAGMEKCLD-----MGLCRGIG 157 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~L~~l~~-----~G~ir~iG 157 (316)
+.+.....+.++.-..+.--.++||-|-.. ..|.++. . ..+... ...+.+.+.++...+ .+.|+.|=
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~lYiHIPFC~--~~C~yC~f~~~~~~~~~~~-~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy 119 (449)
T PRK09058 43 EQLAATWQRLTQQTLRARKRLLYIHIPFCR--THCTFCGFFQNAWNPEAVA-RYTDALIRELAMEADSPLTQSAPIHAVY 119 (449)
T ss_pred HHHHHHHHHHHhhcCCCCceEEEEEeCCcC--CcCCCCCCcCcCCchhhHH-HHHHHHHHHHHHHhhccccCCCeeeEEE
Confidence 445555666553322233447899999743 3444443 1 111111 234444555554443 25677553
Q ss_pred e-----ccccHHHHHHHHHhcC----CCCc-ccccccCcccccHHHHHHHHhcCCeEEEeccCC
Q 037896 158 V-----SNFSSTKIQRLLDFAS----VPPA-TNQVEMHPMWRQSKLREICADNKIHVSAYSPLG 211 (316)
Q Consensus 158 v-----S~~~~~~~~~~~~~~~----~~~~-~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 211 (316)
+ |..+++++.++++... ...+ -+=++.+|-.-..+.++.+++.|+.-+..+.=.
T Consensus 120 ~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQS 183 (449)
T PRK09058 120 FGGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQS 183 (449)
T ss_pred ECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCc
Confidence 3 2235677777766542 1111 122334444445789999999999888765543
No 185
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=22.05 E-value=4.4e+02 Score=26.17 Aligned_cols=72 Identities=6% Similarity=-0.105 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHc-CCeeEEEeccccHHHHHHHHHhcCCCCcccccccCcccccHHHHHHHHhcCCeEEEeccC
Q 037896 136 EFEATWAGMEKCLDM-GLCRGIGVSNFSSTKIQRLLDFASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYSPL 210 (316)
Q Consensus 136 ~~~~~~~~L~~l~~~-G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 210 (316)
+..+++++|...++. ++|--||+.+... .+..+.+..+.+ +.+..|+--..-...+..+++.|+.++.-..+
T Consensus 82 s~~Dil~al~~a~~~~~~ia~vg~~~~~~-~~~~~~~ll~~~--i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~~ 154 (526)
T TIGR02329 82 TGFDVMQALARARRIASSIGVVTHQDTPP-ALRRFQAAFNLD--IVQRSYVTEEDARSCVNDLRARGIGAVVGAGL 154 (526)
T ss_pred ChhhHHHHHHHHHhcCCcEEEEecCcccH-HHHHHHHHhCCc--eEEEEecCHHHHHHHHHHHHHCCCCEEECChH
Confidence 355688888888775 7888888887753 344555554433 34444433222257888899999988774433
No 186
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=21.92 E-value=7e+02 Score=23.75 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=59.0
Q ss_pred CCCCChHHHHHHHHhHhhcCCCCCCceEEEeccCCC-CCchHHHHHHHHHHhhC-CCccceEeeecCCCCCCCCCCCCCC
Q 037896 50 KIYGSEPALGNALAESILEGTVKRENVFVTSKLWGS-DHDDPISALNQTLKNLG-MEYVDMYLVHWPVRLKPWTCYPVPK 127 (316)
Q Consensus 50 ~~YgsE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~-~~~~i~~~~~~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~ 127 (316)
-.||.+..+-+++++...+. +.+-++|.|-.... -.+.+..-+++.-++.. ...+.++.+|.|.....
T Consensus 61 ~V~Gg~~~L~~~i~~~~~~~--~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~-------- 130 (428)
T cd01965 61 AVFGGEDNLIEALKNLLSRY--KPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGS-------- 130 (428)
T ss_pred eeECcHHHHHHHHHHHHHhc--CCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCc--------
Confidence 45677888888888764443 23345665543221 11444444443333221 02366788888754321
Q ss_pred ccchhhhHhHHHHHHHHHHH-------HHcCCeeEEEeccc---cHHHHHHHHHhcCCCC
Q 037896 128 EEDFEQQLEFEATWAGMEKC-------LDMGLCRGIGVSNF---SSTKIQRLLDFASVPP 177 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~L~~l-------~~~G~ir~iGvS~~---~~~~~~~~~~~~~~~~ 177 (316)
.+ .-...++++|-+. ++.++|--||-++. +.+.+.++++..++++
T Consensus 131 --~~---~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v 185 (428)
T cd01965 131 --HE---TGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEP 185 (428)
T ss_pred --HH---HHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCE
Confidence 11 1233344444322 23466777875554 3577888888777544
No 187
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=21.92 E-value=1.6e+02 Score=27.15 Aligned_cols=71 Identities=8% Similarity=0.154 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCeeEEEeccccHHH-----HHHHHHhc----CCCCcc----------cccccCcccccHHHHHHH
Q 037896 137 FEATWAGMEKCLDMGLCRGIGVSNFSSTK-----IQRLLDFA----SVPPAT----------NQVEMHPMWRQSKLREIC 197 (316)
Q Consensus 137 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~-----~~~~~~~~----~~~~~~----------~q~~~~~~~~~~~~~~~~ 197 (316)
..+.++.|+.+.+.++|+.+-+-.|.|.+ +.++..+. +....- .|-.+.. ..-..+++.|
T Consensus 94 ~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~~A 172 (325)
T cd01306 94 DPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYAP-ANRSELAALA 172 (325)
T ss_pred CccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCH-HHHHHHHHHH
Confidence 45588999999999999999999999865 22332222 110000 0111110 0114689999
Q ss_pred HhcCCeEEEec
Q 037896 198 ADNKIHVSAYS 208 (316)
Q Consensus 198 ~~~gi~v~~~~ 208 (316)
+++|+.+.++.
T Consensus 173 ~~~gl~vasH~ 183 (325)
T cd01306 173 RARGIPLASHD 183 (325)
T ss_pred HHCCCcEEEec
Confidence 99999998875
No 188
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=21.88 E-value=1.2e+02 Score=26.20 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=26.9
Q ss_pred HHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHH---cCCeeEEEecccc
Q 037896 93 ALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLD---MGLCRGIGVSNFS 162 (316)
Q Consensus 93 ~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~---~G~ir~iGvS~~~ 162 (316)
.+.+.++.+ .+|++|||.+.. .+.+++|++ -..++++.++.-.
T Consensus 66 ~i~~i~~~~---~ld~VQlHG~e~------------------------~~~~~~l~~~~~~~v~kai~v~~~~ 111 (208)
T COG0135 66 EILEIAEEL---GLDAVQLHGDED------------------------PEYIDQLKEELGVPVIKAISVSEEG 111 (208)
T ss_pred HHHHHHHhc---CCCEEEECCCCC------------------------HHHHHHHHhhcCCceEEEEEeCCcc
Confidence 334444444 489999998732 234444555 4688999998754
No 189
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=21.86 E-value=76 Score=25.09 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCCEEecC
Q 037896 32 QLAVHTALKMGYRHFDTA 49 (316)
Q Consensus 32 ~~~l~~A~~~Gi~~~DTA 49 (316)
...+..+++.|+|+||.-
T Consensus 31 ~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 31 VEGYIQALDHGCRCVELD 48 (135)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 467889999999999843
No 190
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=21.79 E-value=7.6e+02 Score=24.14 Aligned_cols=161 Identities=8% Similarity=-0.025 Sum_probs=74.0
Q ss_pred CChhHHHHHHHHHH-HcCCCEEecCCCC-C-ChHHHHHHHHhHhhcCCCCCCceEEEeccCCCCCchHHHHHHHHHHhhC
Q 037896 26 NHRETTQLAVHTAL-KMGYRHFDTAKIY-G-SEPALGNALAESILEGTVKRENVFVTSKLWGSDHDDPISALNQTLKNLG 102 (316)
Q Consensus 26 ~~~~~~~~~l~~A~-~~Gi~~~DTA~~Y-g-sE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~Lg 102 (316)
.+.+...+-|+... +.|+++|.-++.- . +.+.+-+.++...+++. ..-.+.+.|.+..... .+.+-+.+++.|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~-l~i~w~~~~r~~~i~~---d~ell~~l~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNP-ISVTWGINTRVTDIVR---DADILHLYRRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCC-CCeEEEEecccccccC---CHHHHHHHHHhC
Confidence 34555555566555 5799987433321 1 33333333333221221 1122334444322110 133445566667
Q ss_pred CCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeE----EEeccccHHHHHHHHHhcC-CCC
Q 037896 103 MEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRG----IGVSNFSSTKIQRLLDFAS-VPP 177 (316)
Q Consensus 103 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~----iGvS~~~~~~~~~~~~~~~-~~~ 177 (316)
+.++-+ ..+..++.. . +........++..++++.+++.|..-. +|+-+.+.+.+.+.++... .++
T Consensus 298 ~~~v~i----GiES~~~~~----L--~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~ 367 (497)
T TIGR02026 298 LVHISL----GTEAAAQAT----L--DHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDP 367 (497)
T ss_pred CcEEEE----ccccCCHHH----H--HHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 655444 222211100 0 000000335677888888888886433 4566666666665555432 334
Q ss_pred cccccccCccc--ccHHHHHHHHhcCC
Q 037896 178 ATNQVEMHPMW--RQSKLREICADNKI 202 (316)
Q Consensus 178 ~~~q~~~~~~~--~~~~~~~~~~~~gi 202 (316)
+..+ ++.+. +..++.+.+++.+.
T Consensus 368 ~~~~--~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 368 DQAN--WLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CceE--EEEecCCCCcHHHHHHHhhcc
Confidence 3333 33333 23466666666543
No 191
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=21.76 E-value=1.9e+02 Score=22.15 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEec
Q 037896 90 PISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGVS 159 (316)
Q Consensus 90 i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvS 159 (316)
-+..+++.|+.+....+|.+++..+++... ...+....++.|...| |+-+-++
T Consensus 50 ~R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R----------------~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 50 DRPGLQRLLADVKAGKIDVVLVEKLDRLSR----------------NLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecchhhC----------------CHHHHHHHHHHHHHCC-CEEEEec
Confidence 356777777777767899999998876543 2456777777777765 4444443
No 192
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=21.76 E-value=3.7e+02 Score=23.47 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=34.2
Q ss_pred cHHHHHHHHHhcCCCCccc--ccccCccccc-----HHHHHHHHhcCCeEEEeccCCC
Q 037896 162 SSTKIQRLLDFASVPPATN--QVEMHPMWRQ-----SKLREICADNKIHVSAYSPLGG 212 (316)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~--q~~~~~~~~~-----~~~~~~~~~~gi~v~~~~pl~~ 212 (316)
++.++..+.+.+++.+..+ -.+||.+..+ .++.++++.-|-.-+.+.|+..
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd 107 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLND 107 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccC
Confidence 3456666666666433322 2235555443 5799999999999999999986
No 193
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=21.74 E-value=2.3e+02 Score=27.25 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCC-eeEEEeccccHHHHHHHHHhcCC-----CCcccccccCcccccHHHHHHHHhcCCeEEEeccC
Q 037896 140 TWAGMEKCLDMGL-CRGIGVSNFSSTKIQRLLDFASV-----PPATNQVEMHPMWRQSKLREICADNKIHVSAYSPL 210 (316)
Q Consensus 140 ~~~~L~~l~~~G~-ir~iGvS~~~~~~~~~~~~~~~~-----~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 210 (316)
+.+..+.++++|. ++++.|.+-....++.+.+.-.. -++.+......+.+-+++...|++.||.|+.-..-
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQ 220 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQ 220 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhh
Confidence 5677777788883 56888886555555555554321 11222223333344478999999999977754443
No 194
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=21.35 E-value=6.7e+02 Score=23.34 Aligned_cols=100 Identities=14% Similarity=0.115 Sum_probs=52.8
Q ss_pred EeeecCCCCCCCCCCCCCC-----ccchhhhHhHHHHHHHHHHHHHcC--CeeEEEec--c---ccHHHHHHHHHhcC--
Q 037896 109 YLVHWPVRLKPWTCYPVPK-----EEDFEQQLEFEATWAGMEKCLDMG--LCRGIGVS--N---FSSTKIQRLLDFAS-- 174 (316)
Q Consensus 109 ~~lH~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvS--~---~~~~~~~~~~~~~~-- 174 (316)
+++|.|. .+..|.++.- ...... ...+.+.+.++.+.+.| .|+.|-+. + .+++.+.++++...
T Consensus 4 lYihiPf--C~~~C~yC~~~~~~~~~~~~~-~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~ 80 (377)
T PRK08599 4 AYIHIPF--CEHICYYCDFNKVFIKNQPVD-EYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALSAEQLERLLTAIHRN 80 (377)
T ss_pred EEEEeCC--cCCCCCCCCCeeeccCccCHH-HHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCCHHHHHHHHHHHHHh
Confidence 6788886 3344555441 111121 23455556665444433 56666443 2 23566666665432
Q ss_pred --CCCc-ccccccCcccccHHHHHHHHhcCCeEEEeccCC
Q 037896 175 --VPPA-TNQVEMHPMWRQSKLREICADNKIHVSAYSPLG 211 (316)
Q Consensus 175 --~~~~-~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 211 (316)
.... -+-++.||-.-..+.++..++.|+.-+..++=.
T Consensus 81 ~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS 120 (377)
T PRK08599 81 LPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQT 120 (377)
T ss_pred CCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEeccc
Confidence 1111 122234554445789999999998777765543
No 195
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=21.06 E-value=6e+02 Score=22.67 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=58.1
Q ss_pred ccceeccccC------CChhHHHHHHHHHHHcCCCEEecCC-CCC--ChHHHHHHHHhHhhcCCCCCCceEEEeccCCC-
Q 037896 16 VLGLGTYSFD------NHRETTQLAVHTALKMGYRHFDTAK-IYG--SEPALGNALAESILEGTVKRENVFVTSKLWGS- 85 (316)
Q Consensus 16 ~lglG~~~~~------~~~~~~~~~l~~A~~~Gi~~~DTA~-~Yg--sE~~lG~al~~~~~~~~~~R~~~~I~tK~~~~- 85 (316)
.||+++|.+. .++....+-....+....|.+.-=. .|. +++.+-+|.+. ..+++..+.|+...
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~-------~p~~FrFsvK~~~~i 76 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE-------TPDDFRFSVKAPRAI 76 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh-------CCCCeEEEEEecccc
Confidence 4667777654 2222222322344556677765332 454 67888888876 68999999998642
Q ss_pred CC--------chHHHHHHHHHHhhCCCccceEeeecCCCC
Q 037896 86 DH--------DDPISALNQTLKNLGMEYVDMYLVHWPVRL 117 (316)
Q Consensus 86 ~~--------~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~ 117 (316)
++ ..+.+.+.+-++.|| +++..+++.-|-.-
T Consensus 77 TH~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 77 THQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred cchhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 11 234444555566777 58999999987543
No 196
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=21.04 E-value=7.1e+02 Score=24.21 Aligned_cols=86 Identities=12% Similarity=0.118 Sum_probs=53.9
Q ss_pred hhCCC-ccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHc-CCeeEEEeccccHHHHHHHHHhcC-CC
Q 037896 100 NLGME-YVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDM-GLCRGIGVSNFSSTKIQRLLDFAS-VP 176 (316)
Q Consensus 100 ~Lg~d-~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvS~~~~~~~~~~~~~~~-~~ 176 (316)
+.|-. ..|++-|+.... + .+.+.+.++.+++. +. -+.|.+++++.++++++... ..
T Consensus 121 rvG~~~~AD~IaL~~~s~-d------------------p~~v~~~Vk~V~~~~dv--PLSIDT~dpevleaAleagad~~ 179 (450)
T PRK04165 121 RVGEILKLDMVALRNASG-D------------------PEKFAKAVKKVAETTDL--PLILCSEDPAVLKAALEVVADRK 179 (450)
T ss_pred hhcccccCCEEEEeCCCC-C------------------HHHHHHHHHHHHHhcCC--CEEEeCCCHHHHHHHHHhcCCCC
Confidence 44522 378888887532 1 33455566666553 44 37888999999999998763 34
Q ss_pred CcccccccCcccccHHHHHHHHhcCCeEEEecc
Q 037896 177 PATNQVEMHPMWRQSKLREICADNKIHVSAYSP 209 (316)
Q Consensus 177 ~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~p 209 (316)
+.++-+.. .+-+.+.+.|+++|..++...+
T Consensus 180 plI~Sat~---dN~~~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 180 PLLYAATK---ENYEEMAELAKEYNCPLVVKAP 209 (450)
T ss_pred ceEEecCc---chHHHHHHHHHHcCCcEEEEch
Confidence 43332221 1115788889999988888654
No 197
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=20.89 E-value=4e+02 Score=20.52 Aligned_cols=46 Identities=11% Similarity=-0.076 Sum_probs=31.9
Q ss_pred CCCceEEEeccCCC--CCchHHHHHHHHHHhhCC--CccceEeeecCCCC
Q 037896 72 KRENVFVTSKLWGS--DHDDPISALNQTLKNLGM--EYVDMYLVHWPVRL 117 (316)
Q Consensus 72 ~R~~~~I~tK~~~~--~~~~i~~~~~~sL~~Lg~--d~iDl~~lH~p~~~ 117 (316)
+|=.+.|+-|+... ....+++.+.++++.... ...|++++..+...
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~ 93 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFD 93 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcc
Confidence 56677888885532 237788888888865543 34799999987543
No 198
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=20.65 E-value=3.4e+02 Score=22.99 Aligned_cols=73 Identities=14% Similarity=0.250 Sum_probs=49.6
Q ss_pred cCCCCcccccccCcccccHHHHHHHHhcCCeEEEeccCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHHhhcCC-
Q 037896 173 ASVPPATNQVEMHPMWRQSKLREICADNKIHVSAYSPLGGPGNSWGSTAVVESPVIKSIALKHKATPAQVALKWGLTKG- 251 (316)
Q Consensus 173 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~- 251 (316)
.++.|+++--.+-- -.++..++.+++++.++.+.|-- .-|-.++||+|++.++
T Consensus 34 ~gi~Pd~iiGDfDS--i~~~~~~~~~~~~~~~~~~~~eK------------------------D~TD~e~Al~~~~~~~~ 87 (203)
T TIGR01378 34 LGLTPDLIVGDFDS--IDEEELDFYKKAGVKIIVFPPEK------------------------DTTDLELALKYALERGA 87 (203)
T ss_pred CCCCCCEEEeCccc--CCHHHHHHHHHcCCceEEcCCCC------------------------CCCHHHHHHHHHHHCCC
Confidence 44566655444311 12567788888888887765432 2467889999999876
Q ss_pred -CEEEeCCC--CHHHHHHhhccc
Q 037896 252 -ASVIVKSF--NEERMRENMASF 271 (316)
Q Consensus 252 -~~~ivg~~--~~~~l~enl~a~ 271 (316)
.+++.|+. ..+|.-.|+..+
T Consensus 88 ~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 88 DEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Confidence 57777764 788888888765
No 199
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=20.55 E-value=4.6e+02 Score=21.09 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCe-eEEEeccccHHHH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLC-RGIGVSNFSSTKI 166 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~i-r~iGvS~~~~~~~ 166 (316)
-.+++.+.+-|+..|-+.+|+= +...++ .+..+.-..+.+.+.+|.. +.|-++.......
T Consensus 11 ~~lK~~l~~~L~~~g~eV~D~G----~~~~~~---------------~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~s 71 (143)
T TIGR01120 11 FILKEEIKAFLVERGVKVIDKG----TWSSER---------------TDYPHYAKQVALAVAGGEVDGGILICGTGIGMS 71 (143)
T ss_pred HHHHHHHHHHHHHCCCEEEEeC----CCCCCC---------------CCHHHHHHHHHHHHHCCCCceEEEEcCCcHHHH
Confidence 5688999999999998888863 211111 2344566777777778877 6778888877666
Q ss_pred HHHHHhcCCCCcccccccCcccccHHHHHHHH-hcCCeEEEec
Q 037896 167 QRLLDFASVPPATNQVEMHPMWRQSKLREICA-DNKIHVSAYS 208 (316)
Q Consensus 167 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~-~~gi~v~~~~ 208 (316)
..+.+..++....+. +...-..++ .+|..|++++
T Consensus 72 iaANK~~GIraa~~~--------d~~~A~~ar~hNnaNvl~lG 106 (143)
T TIGR01120 72 IAANKFAGIRAALCS--------EPYMAQMSRLHNDANVLCLG 106 (143)
T ss_pred HHHhcCCCeEEEEEC--------CHHHHHHHHHhcCCcEEEEC
Confidence 666665554433332 223334444 4567788754
No 200
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=20.27 E-value=4.2e+02 Score=26.26 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCee
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCR 154 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir 154 (316)
+...+.+.+.+++||++ .|.+ +...++ .....+.+.+.+|.++|.|-
T Consensus 73 ~~~~~~~~~~~~~l~i~-~d~~----~~t~~~---------------~~~~~~~~~~~~L~~~G~~y 119 (556)
T PRK12268 73 DKYHEEHKEDFKKLGIS-YDLF----TRTTSP---------------NHHEVVQEFFLKLYENGYIY 119 (556)
T ss_pred HHHHHHHHHHHHHcCCc-CCCC----cCCCCH---------------HHHHHHHHHHHHHHHCCCeE
Confidence 56778899999999996 5743 222222 34677889999999999985
No 201
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.25 E-value=5.2e+02 Score=24.44 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=54.1
Q ss_pred HhHHHHHHHHHHHHHcCCee----EEEec--cccHHHHHHHHHhcC-C------CCcccccccCccccc----------H
Q 037896 135 LEFEATWAGMEKCLDMGLCR----GIGVS--NFSSTKIQRLLDFAS-V------PPATNQVEMHPMWRQ----------S 191 (316)
Q Consensus 135 ~~~~~~~~~L~~l~~~G~ir----~iGvS--~~~~~~~~~~~~~~~-~------~~~~~q~~~~~~~~~----------~ 191 (316)
.+++++++++.+..++..=| |+=+. |.+++++.++.+..+ . +..++-++||+.... .
T Consensus 252 ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~i~ 331 (371)
T PRK14461 252 YPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERERVT 331 (371)
T ss_pred CCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHHHH
Confidence 45888999988887653311 22222 566777777777654 3 568899999986421 3
Q ss_pred HHHHHHHhcCCeEEEeccCCC
Q 037896 192 KLREICADNKIHVSAYSPLGG 212 (316)
Q Consensus 192 ~~~~~~~~~gi~v~~~~pl~~ 212 (316)
...+.++++||.+......+.
T Consensus 332 ~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 332 TFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred HHHHHHHHCCceEEEeCCCCc
Confidence 567778899999999988765
No 202
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=20.25 E-value=7.5e+02 Score=23.51 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=55.7
Q ss_pred ccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCee-EEEec---cccHHHHHHHHHhcCC-CCcc
Q 037896 105 YVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCR-GIGVS---NFSSTKIQRLLDFASV-PPAT 179 (316)
Q Consensus 105 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvS---~~~~~~~~~~~~~~~~-~~~~ 179 (316)
..|++.||.-.. ||. ..| .+.++..+..++..+.=.+- -|+=| ..+++.+.++++.+.- +|.+
T Consensus 153 ~aD~Ialr~~S~-DP~-------~~d----~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL 220 (389)
T TIGR00381 153 GADMVTIHLIST-DPK-------LDD----KSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLL 220 (389)
T ss_pred CCCEEEEEecCC-Ccc-------ccc----cCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEE
Confidence 378888887532 221 001 23445556666654432222 23323 4578889999988764 5544
Q ss_pred cccccCcccccHHHHHHHHhcCCeEEEeccCC
Q 037896 180 NQVEMHPMWRQSKLREICADNKIHVSAYSPLG 211 (316)
Q Consensus 180 ~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 211 (316)
+-..... +-+.+.+.|+++|..+++++|..
T Consensus 221 ~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~D 250 (389)
T TIGR00381 221 ASANLDL--DYEKIANAAKKYGHVVLSWTIMD 250 (389)
T ss_pred EecCchh--hHHHHHHHHHHhCCeEEEEcCCc
Confidence 3332211 22689999999999999999875
No 203
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.15 E-value=4.8e+02 Score=24.33 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHcC--C--eeEEEec--cccHHHHHHHHHhcC-CCCcccccccCcccc------c----HHHHHHHH
Q 037896 136 EFEATWAGMEKCLDMG--L--CRGIGVS--NFSSTKIQRLLDFAS-VPPATNQVEMHPMWR------Q----SKLREICA 198 (316)
Q Consensus 136 ~~~~~~~~L~~l~~~G--~--ir~iGvS--~~~~~~~~~~~~~~~-~~~~~~q~~~~~~~~------~----~~~~~~~~ 198 (316)
+.+++++++.+..+.+ + ++++=+. |.+.+.+.++.+... .+..++-++||+... . .......+
T Consensus 232 ~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~ 311 (349)
T PRK14463 232 PLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLL 311 (349)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4577788877776654 2 3345444 445577777766654 445667778887632 1 24567788
Q ss_pred hcCCeEEEeccCCC
Q 037896 199 DNKIHVSAYSPLGG 212 (316)
Q Consensus 199 ~~gi~v~~~~pl~~ 212 (316)
++|+.+......+.
T Consensus 312 ~~gi~v~vR~~~G~ 325 (349)
T PRK14463 312 DKHVTVITRSSRGS 325 (349)
T ss_pred HCCceEEEeCCCCc
Confidence 88999999888765
No 204
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=20.14 E-value=3e+02 Score=21.07 Aligned_cols=70 Identities=11% Similarity=-0.018 Sum_probs=39.3
Q ss_pred cCCCCCCceEEEeccCCCCCchHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHH
Q 037896 68 EGTVKRENVFVTSKLWGSDHDDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKC 147 (316)
Q Consensus 68 ~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 147 (316)
+|.+.|+.+++-.---..+...+...+...++.-....+-=-.+-.|+.. --.++..+.|.+|
T Consensus 36 EgdIL~e~I~~k~~~v~~d~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~E-----------------GLs~E~IE~Lk~L 98 (110)
T PF06819_consen 36 EGDILGEIIYEKDDGVYRDRSSFFKRFKFALKTEDGSALTGEKIISTDAE-----------------GLSKEDIEKLKKL 98 (110)
T ss_pred ccceehheEEEeCCcEEEecccHHHHHHHHHHhcccccccCCeEEecccc-----------------CCCHHHHHHHHHH
Confidence 36666777665443222333556666666665555444310112223221 2256788999999
Q ss_pred HHcCCee
Q 037896 148 LDMGLCR 154 (316)
Q Consensus 148 ~~~G~ir 154 (316)
+++||+.
T Consensus 99 v~eGKi~ 105 (110)
T PF06819_consen 99 VEEGKIE 105 (110)
T ss_pred HHcCCCc
Confidence 9999985
No 205
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=20.14 E-value=3.6e+02 Score=28.30 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHc--CCeeEEEeccccHHH
Q 037896 88 DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDM--GLCRGIGVSNFSSTK 165 (316)
Q Consensus 88 ~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvS~~~~~~ 165 (316)
+.+++.++.....-.....-+|+|+..+.. ..+.+.+|-+..++ ..+++|-++|.....
T Consensus 102 DdIReLIe~a~~~P~~gr~KVIIIDEah~L-------------------T~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 102 DEMAALLERAVYAPVDARFKVYMIDEVHML-------------------TNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred HHHHHHHHHHHhccccCCceEEEEeChhhC-------------------CHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 455555554433322234568888765432 23456666666666 689999999986544
Q ss_pred HHHHHHhcCCCCcccccccCccccc---HHHHHHHHhcCCe
Q 037896 166 IQRLLDFASVPPATNQVEMHPMWRQ---SKLREICADNKIH 203 (316)
Q Consensus 166 ~~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~ 203 (316)
+..+++.+ .++.+..+... +-+...|.+.||.
T Consensus 163 p~TIrSRC------q~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 163 PVTVLSRC------LQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred cchhhhhe------EEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 44444442 34455544433 2334445555553
No 206
>PLN02363 phosphoribosylanthranilate isomerase
Probab=20.01 E-value=2.5e+02 Score=24.95 Aligned_cols=80 Identities=19% Similarity=0.193 Sum_probs=45.0
Q ss_pred eccCCCCC-chHHHHHHHHHHhhCCCccceEeeecCCCCCCCCCCCCCCccchhhhHhHHHHHHHHHHHHHcCCeeEEEe
Q 037896 80 SKLWGSDH-DDPISALNQTLKNLGMEYVDMYLVHWPVRLKPWTCYPVPKEEDFEQQLEFEATWAGMEKCLDMGLCRGIGV 158 (316)
Q Consensus 80 tK~~~~~~-~~i~~~~~~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGv 158 (316)
.|++.... +.++.. .++|.|++=+++...--+. .+.+. .+.+.+......++.+||
T Consensus 49 VKICGit~~eda~~a-----~~~GaD~iGfIf~~~SpR~-----------------Vs~e~-a~~I~~~l~~~~~~~VgV 105 (256)
T PLN02363 49 VKMCGITSARDAAMA-----VEAGADFIGMILWPKSKRS-----------------ISLSV-AKEISQVAREGGAKPVGV 105 (256)
T ss_pred EEECCCCcHHHHHHH-----HHcCCCEEEEecCCCCCCc-----------------CCHHH-HHHHHHhccccCccEEEE
Confidence 56665543 334333 4589999998643321111 22222 233333332224667998
Q ss_pred c-cccHHHHHHHHHhcCCCCccccccc
Q 037896 159 S-NFSSTKIQRLLDFASVPPATNQVEM 184 (316)
Q Consensus 159 S-~~~~~~~~~~~~~~~~~~~~~q~~~ 184 (316)
. +-+++.+.++++. ..++++|++-
T Consensus 106 fv~~~~~~I~~~~~~--~~ld~VQLHG 130 (256)
T PLN02363 106 FVDDDANTILRAADS--SDLELVQLHG 130 (256)
T ss_pred EeCCCHHHHHHHHHh--cCCCEEEECC
Confidence 6 6778888777776 5568889864
Done!