BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037898
         (287 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DI8|A Chain A, Crystal Structure Of The D248a Mutant Of
           2-pyrone-4,6-dicarboxylic Acid Hydrolase From
           Sphingomonas Paucimobilis Complexed With Substrate At Ph
           8.5
 pdb|4DI8|B Chain B, Crystal Structure Of The D248a Mutant Of
           2-pyrone-4,6-dicarboxylic Acid Hydrolase From
           Sphingomonas Paucimobilis Complexed With Substrate At Ph
           8.5
 pdb|4DI9|A Chain A, Crystal Structure Of The D248a Mutant Of
           2-pyrone-4,6-dicarboxylic Acid Hydrolase From
           Sphingomonas Paucimobilis Complexed With Substrate At Ph
           6.5
          Length = 303

 Score = 30.0 bits (66), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 93  VKGFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGAN 152
           +K F R LLD     + K        P  PP+D +A S+  L+A Y    +  T +   +
Sbjct: 195 MKAFRR-LLDSREDIWFKATCPDRLDPAGPPWDDFARSVAPLVADYADRVIWGTAW--PH 251

Query: 153 PRLQDA 158
           P +QDA
Sbjct: 252 PNMQDA 257


>pdb|4DIA|A Chain A, Crystal Structure Of The D248n Mutant Of
           2-pyrone-4,6-dicarboxylic Acid Hydrolase From
           Sphingomonas Paucimobilis Complexed With Substrate At Ph
           4.6
          Length = 303

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 93  VKGFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGAN 152
           +K F R LLD     + K        P  PP+D +A S+  L+A Y    +  T +   +
Sbjct: 195 MKAFRR-LLDSREDIWFKATCPDRLDPAGPPWDDFARSVAPLVADYADRVIWGTNW--PH 251

Query: 153 PRLQDA 158
           P +QDA
Sbjct: 252 PNMQDA 257


>pdb|4D8L|A Chain A, Crystal Structure Of The 2-pyrone-4,6-dicarboxylic Acid
           Hydrolase From Sphingomonas Paucimobilis
          Length = 303

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 93  VKGFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGAN 152
           +K F R LLD     + K        P  PP+D +A S+  L+A Y    +  T +   +
Sbjct: 195 MKAFRR-LLDSREDIWFKATCPDRLDPAGPPWDDFARSVAPLVADYADRVIWGTDW--PH 251

Query: 153 PRLQDA 158
           P +QDA
Sbjct: 252 PNMQDA 257


>pdb|3AIU|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye
 pdb|3AIV|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
           With An Aglycone Dimboa
 pdb|3AIW|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
           With 2-Deoxy-2- Fluoroglucoside And Dinitrophenol
          Length = 564

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 107 TFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGY 148
           ++++++    GKP     D Y N IN LI   ++PYV +  +
Sbjct: 150 SWSRILPNGTGKPNQKGIDYYNNLINSLIRHGIVPYVTIWHW 191


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.139    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,542,016
Number of Sequences: 62578
Number of extensions: 430550
Number of successful extensions: 891
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 18
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)