Query 037898
Match_columns 287
No_of_seqs 181 out of 342
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:24:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13668 Ferritin_2: Ferritin- 100.0 1.4E-33 3.1E-38 234.4 13.0 134 17-184 1-137 (137)
2 cd01045 Ferritin_like_AB Uncha 98.5 1.1E-06 2.4E-11 70.5 10.0 134 20-181 1-138 (139)
3 cd00657 Ferritin_like Ferritin 98.4 7.3E-06 1.6E-10 62.7 11.9 129 20-182 1-130 (130)
4 PF02915 Rubrerythrin: Rubrery 97.7 0.00022 4.7E-09 57.3 9.0 127 20-181 1-136 (137)
5 cd01048 Ferritin_like_AB2 Unch 97.6 0.00054 1.2E-08 57.8 10.1 124 19-175 2-128 (135)
6 COG1633 Uncharacterized conser 96.9 0.019 4E-07 51.0 12.4 144 16-185 23-169 (176)
7 cd07908 Mn_catalase_like Manga 96.7 0.022 4.7E-07 48.3 10.7 105 68-182 46-154 (154)
8 PRK12775 putative trifunctiona 96.6 0.029 6.2E-07 61.5 13.2 142 15-188 858-1001(1006)
9 PRK13456 DNA protection protei 96.4 0.022 4.7E-07 51.3 9.1 140 19-186 22-166 (186)
10 cd01044 Ferritin_CCC1_N Ferrit 96.2 0.13 2.9E-06 42.3 12.0 121 21-183 2-124 (125)
11 cd01052 DPSL DPS-like protein, 95.7 0.31 6.7E-06 40.4 12.4 138 19-182 8-148 (148)
12 cd00907 Bacterioferritin Bacte 95.4 0.46 1E-05 39.6 12.3 130 19-185 7-140 (153)
13 PF13668 Ferritin_2: Ferritin- 95.1 0.11 2.4E-06 43.0 7.6 65 7-94 70-136 (137)
14 cd07908 Mn_catalase_like Manga 93.5 0.26 5.7E-06 41.6 6.8 55 16-93 100-154 (154)
15 cd01045 Ferritin_like_AB Uncha 93.2 0.33 7.1E-06 38.6 6.6 55 15-92 84-138 (139)
16 cd01051 Mn_catalase Manganese 93.1 1.1 2.5E-05 38.9 10.2 97 68-184 52-154 (156)
17 PRK10635 bacterioferritin; Pro 91.4 5.8 0.00013 34.5 12.5 126 19-186 8-142 (158)
18 PF02915 Rubrerythrin: Rubrery 88.4 1.2 2.5E-05 35.5 5.4 53 17-92 84-136 (137)
19 cd01041 Rubrerythrin Rubreryth 88.4 13 0.00028 30.7 11.9 126 18-184 2-132 (134)
20 TIGR02284 conserved hypothetic 87.9 6.1 0.00013 33.5 9.7 135 19-181 2-138 (139)
21 cd00657 Ferritin_like Ferritin 86.3 3.3 7.2E-05 31.1 6.6 56 15-93 75-130 (130)
22 PF09968 DUF2202: Uncharacteri 85.6 24 0.00053 31.3 12.4 149 19-204 2-159 (162)
23 TIGR00754 bfr bacterioferritin 82.3 29 0.00064 29.3 12.7 130 19-185 8-141 (157)
24 PRK12775 putative trifunctiona 79.3 5 0.00011 44.4 7.0 56 16-94 940-996 (1006)
25 cd01046 Rubrerythrin_like rubr 78.2 37 0.00079 27.9 11.3 115 20-184 4-121 (123)
26 cd01041 Rubrerythrin Rubreryth 78.1 5.4 0.00012 33.0 5.4 58 17-94 73-131 (134)
27 cd01042 DMQH Demethoxyubiquino 73.2 13 0.00028 32.9 6.7 105 68-180 28-136 (165)
28 cd01055 Nonheme_Ferritin nonhe 72.9 54 0.0012 27.3 12.6 129 19-183 5-137 (156)
29 PF00210 Ferritin: Ferritin-li 70.5 51 0.0011 26.0 11.4 132 19-184 1-138 (142)
30 PF11272 DUF3072: Protein of u 68.9 13 0.00028 27.7 4.7 39 172-212 18-56 (57)
31 COG2406 Protein distantly rela 65.2 57 0.0012 29.0 8.8 134 21-187 21-164 (172)
32 PF14530 DUF4439: Domain of un 64.8 63 0.0014 27.4 8.9 97 66-183 22-124 (131)
33 cd01048 Ferritin_like_AB2 Unch 64.6 25 0.00055 29.5 6.5 55 14-91 79-133 (135)
34 PRK13456 DNA protection protei 61.8 31 0.00067 31.3 6.8 68 7-95 95-164 (186)
35 PRK13654 magnesium-protoporphy 58.5 14 0.0003 36.5 4.2 56 131-186 85-142 (355)
36 COG1633 Uncharacterized conser 57.9 34 0.00074 30.4 6.4 58 14-94 110-167 (176)
37 PRK10635 bacterioferritin; Pro 57.3 27 0.00059 30.3 5.6 59 16-94 81-139 (158)
38 cd01047 ACSF Aerobic Cyclase S 56.9 14 0.00031 36.0 4.0 56 131-186 65-122 (323)
39 cd01046 Rubrerythrin_like rubr 55.6 32 0.00069 28.3 5.5 59 16-94 62-120 (123)
40 cd00907 Bacterioferritin Bacte 52.2 39 0.00085 27.9 5.6 58 17-94 81-138 (153)
41 TIGR02029 AcsF magnesium-proto 51.3 19 0.00041 35.3 3.9 56 131-186 75-132 (337)
42 CHL00185 ycf59 magnesium-proto 50.9 20 0.00043 35.3 4.0 55 131-185 81-137 (351)
43 cd01051 Mn_catalase Manganese 49.2 84 0.0018 27.3 7.3 55 17-94 99-153 (156)
44 PLN02508 magnesium-protoporphy 49.1 19 0.00041 35.5 3.6 55 131-185 81-137 (357)
45 PF09537 DUF2383: Domain of un 48.2 73 0.0016 25.2 6.3 104 19-151 3-108 (111)
46 cd01055 Nonheme_Ferritin nonhe 45.4 53 0.0011 27.4 5.4 58 17-94 80-137 (156)
47 PF04305 DUF455: Protein of un 45.1 38 0.00083 31.9 4.8 57 68-125 180-237 (253)
48 PF00210 Ferritin: Ferritin-li 43.7 74 0.0016 25.1 5.8 58 17-94 80-137 (142)
49 PF03232 COQ7: Ubiquinone bios 41.0 60 0.0013 28.8 5.2 53 138-193 11-64 (172)
50 cd01044 Ferritin_CCC1_N Ferrit 39.7 51 0.0011 26.9 4.3 55 134-188 3-57 (125)
51 PF11220 DUF3015: Protein of u 38.9 65 0.0014 28.0 5.0 64 137-206 68-131 (144)
52 COG2941 CAT5 Ubiquinone biosyn 37.2 59 0.0013 29.9 4.6 33 68-100 69-102 (204)
53 PF03232 COQ7: Ubiquinone bios 36.7 87 0.0019 27.8 5.5 100 68-175 31-137 (172)
54 PF11583 AurF: P-aminobenzoate 35.7 1.2E+02 0.0025 28.4 6.6 112 67-188 110-230 (304)
55 PF11553 DUF3231: Protein of u 35.2 2.8E+02 0.0062 23.6 8.9 86 68-170 45-136 (166)
56 COG2193 Bfr Bacterioferritin ( 30.4 86 0.0019 27.8 4.3 59 16-94 81-139 (157)
57 cd07910 MiaE MiaE tRNA-modifyi 29.7 4.3E+02 0.0093 24.0 11.6 110 69-186 48-159 (180)
58 PF12902 Ferritin-like: Ferrit 28.8 1.9E+02 0.0042 26.6 6.7 61 22-102 1-62 (227)
59 COG1867 TRM1 N2,N2-dimethylgua 28.4 39 0.00084 33.9 2.1 63 123-186 126-195 (380)
60 PF01786 AOX: Alternative oxid 27.5 83 0.0018 28.9 3.9 56 28-88 139-201 (207)
61 cd01052 DPSL DPS-like protein, 27.4 2.4E+02 0.0051 23.0 6.4 57 16-93 92-148 (148)
62 PF13628 DUF4142: Domain of un 27.4 3.5E+02 0.0076 22.2 8.4 106 68-180 30-138 (139)
63 TIGR00754 bfr bacterioferritin 25.7 98 0.0021 26.1 3.9 58 17-94 82-139 (157)
64 COG3546 Mn-containing catalase 25.1 6.3E+02 0.014 24.4 9.8 115 69-188 52-192 (277)
65 PF05974 DUF892: Domain of unk 22.2 1.5E+02 0.0033 25.5 4.4 112 68-182 33-150 (159)
66 TIGR02284 conserved hypothetic 21.5 3E+02 0.0066 23.1 6.1 79 141-222 12-90 (139)
67 PF05067 Mn_catalase: Manganes 21.3 1.1E+02 0.0023 29.6 3.6 118 71-188 55-197 (283)
68 cd01042 DMQH Demethoxyubiquino 20.6 1.4E+02 0.0029 26.5 3.8 50 141-193 12-61 (165)
69 cd00904 Ferritin Ferritin iron 20.4 5.4E+02 0.012 21.9 7.6 97 19-149 5-103 (160)
70 cd01050 Acyl_ACP_Desat Acyl AC 20.2 7.9E+02 0.017 23.7 10.5 106 71-186 95-206 (297)
No 1
>PF13668 Ferritin_2: Ferritin-like domain
Probab=100.00 E-value=1.4e-33 Score=234.43 Aligned_cols=134 Identities=39% Similarity=0.685 Sum_probs=125.1
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhh-c-
Q 037898 17 SDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTV-K- 94 (287)
Q Consensus 17 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aL-g- 94 (287)
+|++||||||+|||||.+||.+++.+++.++ . +..+++.+++++++|+.||..|+++|+++| |
T Consensus 1 ~D~~iL~~Al~lE~l~~~fY~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~g~ 65 (137)
T PF13668_consen 1 GDLDILNFALNLEYLEADFYQQAAEGFTLQD-N--------------KAALDPEVRDLFQEIADQEQGHVDFLQAALEGG 65 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCChhh-h--------------hccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6999999999999999999999998877653 1 355789999999999999999999999999 6
Q ss_pred -CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHhHHHhhhh
Q 037898 95 -GFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESG 173 (287)
Q Consensus 95 -av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~ 173 (287)
++++|.+|+ +||||+|+.+||..|+.||++|+++|+|++++++|++++.++++|++||++
T Consensus 66 ~~~~~~~~~~-------------------~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~i~~~Ea~ 126 (137)
T PF13668_consen 66 RPVPPPAYDF-------------------PFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAASIAGVEAR 126 (137)
T ss_pred CCCCCCcccc-------------------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 788898887 489999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 037898 174 QDAVIRALLYE 184 (287)
Q Consensus 174 Haa~IR~lL~~ 184 (287)
|++|||++|+|
T Consensus 127 H~~~ir~ll~~ 137 (137)
T PF13668_consen 127 HAAWIRNLLGQ 137 (137)
T ss_pred HHHHHHHHhcC
Confidence 99999999985
No 2
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.50 E-value=1.1e-06 Score=70.54 Aligned_cols=134 Identities=17% Similarity=0.217 Sum_probs=103.2
Q ss_pred hhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCC---
Q 037898 20 DLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVKGF--- 96 (287)
Q Consensus 20 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLgav--- 96 (287)
+|||.|+.+|.....||...+... -++.++.++++++.+|..|...|...+...
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~-----------------------~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~ 57 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKA-----------------------KDPELKKLFEELAEEEKEHAERLEELYEKLFGE 57 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHC-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 589999999999999999986321 146799999999999999999999998722
Q ss_pred CCccccCCcchHHHHHHHhcCCCCC-CCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHhHHHhhhhhH
Q 037898 97 PRPLLDLSAGTFAKVMDKAFGKPLN-PPFDPYANSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQD 175 (287)
Q Consensus 97 ~~P~id~s~~~F~~~~~~A~g~~l~-p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Ha 175 (287)
+-|..... .+.... .+.... ..+.+-.+...-|..+.-+|..++.-|.-.+..+.++..+.+...|...|.+|.
T Consensus 58 ~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d~~~~~~~~~l~~~E~~H~ 132 (139)
T cd01045 58 ELPELEPE--DYKEEV---EEEPEFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEKAEDPEVKKLFEELAEEERGHL 132 (139)
T ss_pred cCCcccHH--HHHHHH---hhhhhHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 44544332 121110 010000 011234578889999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 037898 176 AVIRAL 181 (287)
Q Consensus 176 a~IR~l 181 (287)
..+|.+
T Consensus 133 ~~l~~~ 138 (139)
T cd01045 133 RLLEEL 138 (139)
T ss_pred HHHHHh
Confidence 999975
No 3
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.40 E-value=7.3e-06 Score=62.70 Aligned_cols=129 Identities=22% Similarity=0.155 Sum_probs=99.7
Q ss_pred hhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCC
Q 037898 20 DLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK-GFPR 98 (287)
Q Consensus 20 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg-av~~ 98 (287)
.+||-++..|+....+|...... +. ++.++.++.+++.+|..|.+.|.+.+. -...
T Consensus 1 ~~L~~~~~~E~~a~~~y~~~~~~----------------------~~-~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~ 57 (130)
T cd00657 1 RLLNDALAGEYAAIIAYGQLAAR----------------------AP-DPDLKDELLEIADEERRHADALAERLRELGGT 57 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH----------------------cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 36899999999999999998632 11 588999999999999999999999886 1122
Q ss_pred ccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHH
Q 037898 99 PLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVI 178 (287)
Q Consensus 99 P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~I 178 (287)
|..... .+. .. . ++..+..+....|..+...|..++..|......+.+++.+.....|...|.+|...+
T Consensus 58 ~~~~~~--~~~----~~-~----~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~d~~~~~~~~~~~~~E~~H~~~~ 126 (130)
T cd00657 58 PPLPPA--HLL----AA-Y----ALPKTSDDPAEALRAALEVEARAIAAYRELIEQADDPELRRLLERILADEQRHAAWF 126 (130)
T ss_pred CCCCHH--HHH----Hh-c----ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 221111 000 01 1 122334677888999999999999999999998899999999999999999999998
Q ss_pred HHHH
Q 037898 179 RALL 182 (287)
Q Consensus 179 R~lL 182 (287)
+.++
T Consensus 127 ~~~~ 130 (130)
T cd00657 127 RKLL 130 (130)
T ss_pred HhhC
Confidence 8653
No 4
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=97.74 E-value=0.00022 Score=57.27 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=98.4
Q ss_pred hhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-C--C
Q 037898 20 DLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK-G--F 96 (287)
Q Consensus 20 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg-a--v 96 (287)
++|+.|+..|.-...||...+... +..+ |.++.++.+++.+|..|.++|.+.+. - -
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~-------------------~~~~--p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~ 59 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKA-------------------KDEG--PELKELFRRLAEEEQEHAKFLEKLLRKLGPG 59 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHTT--HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh-------------------hhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 689999999999999999986321 0111 78999999999999999999999987 2 1
Q ss_pred CCccccCCcchHHHHHHHhcCCCCCCCCCC------CCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHhHHHh
Q 037898 97 PRPLLDLSAGTFAKVMDKAFGKPLNPPFDP------YANSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGV 170 (287)
Q Consensus 97 ~~P~id~s~~~F~~~~~~A~g~~l~p~FdP------y~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~V 170 (287)
..|.+--. ...+.+.+ -.|....+..+...|.-++.-|.-.+..+.++..+...-.|...
T Consensus 60 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~~~~~~~~~~l~~~ 125 (137)
T PF02915_consen 60 EEPPFLEE--------------KVEYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAELARKAPDPEIRKLFEELAKE 125 (137)
T ss_dssp HHTHCHCC--------------CCCHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred cCcchhhh--------------hhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22321100 01111222 12467788889999999999999999999999999999999999
Q ss_pred hhhhHHHHHHH
Q 037898 171 ESGQDAVIRAL 181 (287)
Q Consensus 171 EA~Haa~IR~l 181 (287)
|.+|...++.+
T Consensus 126 E~~H~~~l~~l 136 (137)
T PF02915_consen 126 EKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 5
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=97.63 E-value=0.00054 Score=57.80 Aligned_cols=124 Identities=20% Similarity=0.262 Sum_probs=97.6
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CC
Q 037898 19 IDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK--GF 96 (287)
Q Consensus 19 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg--av 96 (287)
.++|.||+..|++.-+||......+| .+.++..|+..|..|...|+..+. .+
T Consensus 2 ~~~L~~Ale~Ek~a~~~Y~~~~~k~~--------------------------~~~~F~~la~~E~~H~~~l~~L~~~~~~ 55 (135)
T cd01048 2 IAALLYALEEEKLARDVYLALYEKFG--------------------------GLRPFSNIAESEQRHMDALKTLLERYGL 55 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc--------------------------CcchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999875432 336788899999999999999998 88
Q ss_pred CCccccCCcchHHHHH-HHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHhHHHhhhhhH
Q 037898 97 PRPLLDLSAGTFAKVM-DKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQD 175 (287)
Q Consensus 97 ~~P~id~s~~~F~~~~-~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Ha 175 (287)
+.|..+...+.|...- +... ...-.+...-|..+..+|...+.=|.-++...+|++++..--.+...|-.|-
T Consensus 56 ~~p~~~~~~~~f~~~~~~~l~-------~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~~d~d~k~v~~~L~~~e~~H~ 128 (135)
T cd01048 56 PDPVDPFSGGVFTNPQYNQLV-------EQGPKSLQDALEVGVLIEELDIADYDRLLERTQNPDIRDVFENLQAASRNHH 128 (135)
T ss_pred CCCCCccccccccchhHHHHH-------HhccccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 8887766554443110 0000 0113467888999999999999999999999999999999888888888774
No 6
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.019 Score=51.02 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=104.7
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-
Q 037898 16 QSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK- 94 (287)
Q Consensus 16 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg- 94 (287)
.+-.++|++|+..|.=.-.||.+.+.- --++.++.++.+|+.+|..|.+-+++.+.
T Consensus 23 ~~~~e~L~~Ai~~E~eA~~fY~~lae~-----------------------~~~~~~rk~~~~la~eE~~H~~~f~~l~~~ 79 (176)
T COG1633 23 LSIEELLAIAIRGELEAIKFYEELAER-----------------------IEDEEIRKLFEDLADEEMRHLRKFEKLLEK 79 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------cCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466899999999999999999998632 12578999999999999999999998887
Q ss_pred CCCCccccCCcchHHHHHHHhcCCCCCC--CCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHhHHHhhh
Q 037898 95 GFPRPLLDLSAGTFAKVMDKAFGKPLNP--PFDPYANSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVES 172 (287)
Q Consensus 95 av~~P~id~s~~~F~~~~~~A~g~~l~p--~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA 172 (287)
-.++|.-......+. +........| .++.=.+...=+..|.--|--.+--|...+-.+.|.+.+.+.-.|...|-
T Consensus 80 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~~~~~~~~~~~a~~E~ 156 (176)
T COG1633 80 LTPKEVSSEEEEGEI---ESEILEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVNEEAKKLFKTIADDEK 156 (176)
T ss_pred hcCCccchhhhhcch---hhhhccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 444442111110000 0000111111 23333344455666777799999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhh
Q 037898 173 GQDAVIRALLYEK 185 (287)
Q Consensus 173 ~Haa~IR~lL~~~ 185 (287)
+|..+++..+...
T Consensus 157 ~H~~~l~~~~~~~ 169 (176)
T COG1633 157 GHASGLLSLYNRL 169 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877654
No 7
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=96.71 E-value=0.022 Score=48.30 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc---CCCCccccCCcchHHHHHHHhcCCCCCCC-CCCCCChHHHHHHHhhccch
Q 037898 68 DAFANDVVLQFAWQEVGHLKAIKKTVK---GFPRPLLDLSAGTFAKVMDKAFGKPLNPP-FDPYANSINYLIASYLIPYV 143 (287)
Q Consensus 68 ~~~~~~~~~eia~~E~~HV~~L~~aLg---av~~P~id~s~~~F~~~~~~A~g~~l~p~-FdPy~n~~~FL~~A~~~E~V 143 (287)
++.+++++.+++.+|..|...|...++ +.|...-. ....| ....+. +.+-.+....|..+..+|.-
T Consensus 46 ~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~L~~~~~~E~~ 115 (154)
T cd07908 46 YPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSS-SSDKF---------TYWTGKYVNYGESIKEMLKLDIASEKA 115 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhh-ccccC---------CcCCccccCCccCHHHHHHHHHHHHHH
Confidence 588999999999999999999999876 33321111 00001 001111 11224677899999999999
Q ss_pred hHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHH
Q 037898 144 GLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVIRALL 182 (287)
Q Consensus 144 GvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL 182 (287)
++.-|..++..+.|++.+...-.|+.-|-.|..++..+|
T Consensus 116 ai~~Y~~~~~~~~d~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 116 AIAKYKRQAETIKDPYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999987664
No 8
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.59 E-value=0.029 Score=61.46 Aligned_cols=142 Identities=12% Similarity=0.125 Sum_probs=109.4
Q ss_pred CCCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037898 15 PQSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK 94 (287)
Q Consensus 15 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg 94 (287)
..++.+||.+|+.+|==--+||+..+.. + -++.+++++.++|..|..|.+.|++.+.
T Consensus 858 ~~~~~eil~~Ai~mE~~g~~FY~~~A~~----------------------a-~~~~~K~lF~~LA~eE~~H~~~l~~~~~ 914 (1006)
T PRK12775 858 DAAALEAIRTAFEIELGGMAFYARAAKE----------------------T-SDPVLKELFLKFAGMEQEHMATLARRYH 914 (1006)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----------------------c-CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577899999999999999999998732 1 2688999999999999999999988876
Q ss_pred -CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChh-HHHHHHhHHHhhh
Q 037898 95 -GFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRLQDAT-SKRLVAGLLGVES 172 (287)
Q Consensus 95 -av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~-~l~aAa~Il~VEA 172 (287)
..+.+.-++. .+. ...-..+ +++..++.+.|..|.-+|.=.+.=|..++-...+++ .+++...|..-|-
T Consensus 915 ~~~~~~~~~~~--~~~----~~~~~~~---~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~~d~e~~k~l~~~LA~EEk 985 (1006)
T PRK12775 915 AAAPSPTEGFK--IER----AAIMAGV---KGRPDDPGNLFRIAIEFERRAVKFFKERVAETPDGSVERQLYKELAAEER 985 (1006)
T ss_pred hccCCcccccc--cch----hhhhhhh---ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence 3333222221 010 0000011 122356788999999999999999999999999986 6899999999999
Q ss_pred hhHHHHHHHHHhhhhc
Q 037898 173 GQDAVIRALLYEKANE 188 (287)
Q Consensus 173 ~Haa~IR~lL~~~~~~ 188 (287)
.|-..+..++.+.++-
T Consensus 986 ~Hl~~L~~~~d~~~~~ 1001 (1006)
T PRK12775 986 EHVALLTTEFERWKQG 1001 (1006)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999988876643
No 9
>PRK13456 DNA protection protein DPS; Provisional
Probab=96.41 E-value=0.022 Score=51.33 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=98.4
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhh---cC
Q 037898 19 IDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTV---KG 95 (287)
Q Consensus 19 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aL---ga 95 (287)
+++||=||.-||+-.=.|..... ...| -..+.+...+++-+.+|..|...|-.-| |+
T Consensus 22 i~lLn~AlA~E~~a~~~Y~~~a~-----------~~~G---------~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG 81 (186)
T PRK13456 22 VELLVKNAAAEFTTYYYYTILRA-----------HLIG---------LEGEGLKEIAEDARLEDRNHFEALVPRIYELGG 81 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHhC---------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 78999999999998888866542 1111 0136788999999999999999998665 44
Q ss_pred CCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCC--ChhHHHHHHhHHHhhhh
Q 037898 96 FPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRLQ--DATSKRLVAGLLGVESG 173 (287)
Q Consensus 96 v~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~--~~~~l~aAa~Il~VEA~ 173 (287)
.| ..|. ..|-.+.....- .+|=| -+|...+|...-.=|...+..|.=....+. ++.....+-.||+.|-.
T Consensus 82 ~P--~~~p--~~~~~ls~~~~~---~~p~d-~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~IL~dE~e 153 (186)
T PRK13456 82 KL--PRDI--REFHDISACPDA---YLPEN-PTDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALAILQEEIE 153 (186)
T ss_pred CC--CCCh--HHHhhhhcCccc---cCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 33 2222 223222111110 11222 235778999988889999999987776664 55578999999999999
Q ss_pred hHHHHHHHHHhhh
Q 037898 174 QDAVIRALLYEKA 186 (287)
Q Consensus 174 Haa~IR~lL~~~~ 186 (287)
|..++..+|..+.
T Consensus 154 H~~dl~~lL~~~~ 166 (186)
T PRK13456 154 HEAWFSELLGGGP 166 (186)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998653
No 10
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=96.18 E-value=0.13 Score=42.28 Aligned_cols=121 Identities=21% Similarity=0.139 Sum_probs=84.4
Q ss_pred hhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCC
Q 037898 21 LLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK--GFPR 98 (287)
Q Consensus 21 iLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg--av~~ 98 (287)
.+|=.+.-|.-...||...+.- --++.++.++.++|.+|..|..++++.++ +.+.
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~-----------------------~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~ 58 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKR-----------------------EKDPENREILLKLAEDERRHAEFWKKFLGKRGVPP 58 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 4666788999999999998631 12578999999999999999999999988 3332
Q ss_pred ccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHH
Q 037898 99 PLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVI 178 (287)
Q Consensus 99 P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~I 178 (287)
|.-++. ..|-......+ +....+..+.-.|.-++.-|...... +.....|..-|-.|-..+
T Consensus 59 ~~~~~~-~~~~~~l~~~~------------g~~~~l~~~~~~E~~ai~~Y~~~~~~------~~~~~~Ii~dE~~H~~~L 119 (125)
T cd01044 59 PRPKLK-IFFYKLLARIF------------GPTFVLKLLERGEERAIEKYDRLLEE------RPELKEIIADELEHEEVL 119 (125)
T ss_pred CCccHH-HHHHHHHHHHH------------hHHHHHHHHHHhHHhhHhhHHhhhhh------hHHHHHHHHHHHHHHHHH
Confidence 200111 01222211111 22345666667888899999887655 556678999999999998
Q ss_pred HHHHH
Q 037898 179 RALLY 183 (287)
Q Consensus 179 R~lL~ 183 (287)
+.++.
T Consensus 120 ~~~~~ 124 (125)
T cd01044 120 IALLD 124 (125)
T ss_pred HHhhh
Confidence 87763
No 11
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=95.71 E-value=0.31 Score=40.41 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=95.8
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC
Q 037898 19 IDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK-GFP 97 (287)
Q Consensus 19 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg-av~ 97 (287)
++.||=+|+.|+.-...|..-..- +. | .++ ..+...+++++.+|..|+..|-.-+- =-.
T Consensus 8 ~~~Ln~~la~e~~~~~~y~~~~~~---------~~--g--------~~f-~~l~~~~~~~~~ee~~Had~laEri~~lGg 67 (148)
T cd01052 8 IELLNKAFADEWLAYYYYTILAKH---------VK--G--------PEG-EGIKEELEEAAEEELNHAELLAERIYELGG 67 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------Hc--C--------Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467999999999988888664321 00 0 111 46889999999999999999987765 112
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccC--CChhHHHHHHhHHHhhhhhH
Q 037898 98 RPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRL--QDATSKRLVAGLLGVESGQD 175 (287)
Q Consensus 98 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l--~~~~~l~aAa~Il~VEA~Ha 175 (287)
.|..... .|... .+..+..+-.-..+....+....--|...+..|....... .|.......-.|+.-|-.|.
T Consensus 68 ~p~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~D~~t~~ll~~~l~de~~h~ 141 (148)
T cd01052 68 TPPRDPK--DWYEI----SGCKCGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHGKDPVTYDLALAILNEEIEHE 141 (148)
T ss_pred CCCCChH--HHHHH----hcccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 3443321 22211 1111111111234777899999999999999999888765 56667888899999999999
Q ss_pred HHHHHHH
Q 037898 176 AVIRALL 182 (287)
Q Consensus 176 a~IR~lL 182 (287)
.+++++|
T Consensus 142 ~~~~~~~ 148 (148)
T cd01052 142 EDLEELL 148 (148)
T ss_pred HHHHhhC
Confidence 9999875
No 12
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=95.39 E-value=0.46 Score=39.59 Aligned_cols=130 Identities=14% Similarity=0.063 Sum_probs=94.5
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC
Q 037898 19 IDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK-GFP 97 (287)
Q Consensus 19 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg-av~ 97 (287)
++.||=+++.||--...|.+...-. + ..++ +.+...+.+++.+|..|...|-.-+. --.
T Consensus 7 ~~~Ln~~l~~E~~a~~~Y~~~a~~~--~-----------------~~~~-~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg 66 (153)
T cd00907 7 IEALNKALTGELTAINQYFLHARML--E-----------------DWGL-EKLAERFRKESIEEMKHADKLIERILFLEG 66 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H-----------------cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999998543210 0 0111 55789999999999999999988774 112
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccc---cCCChhHHHHHHhHHHhhhhh
Q 037898 98 RPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANP---RLQDATSKRLVAGLLGVESGQ 174 (287)
Q Consensus 98 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap---~l~~~~~l~aAa~Il~VEA~H 174 (287)
+|.+.-. .++ ....+....|..+.--|.--+..|.-... ...++......-.|+..|-.|
T Consensus 67 ~p~~~~~----------------~~~-~~~~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h 129 (153)
T cd00907 67 LPNLQRL----------------GKL-RIGEDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEH 129 (153)
T ss_pred CCCCCcC----------------CCC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3332110 011 11136677888888888888999998754 357888899999999999999
Q ss_pred HHHHHHHHHhh
Q 037898 175 DAVIRALLYEK 185 (287)
Q Consensus 175 aa~IR~lL~~~ 185 (287)
..++|.++...
T Consensus 130 ~~~l~~~l~~~ 140 (153)
T cd00907 130 IDWLETQLDLI 140 (153)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 13
>PF13668 Ferritin_2: Ferritin-like domain
Probab=95.08 E-value=0.11 Score=42.98 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=52.5
Q ss_pred CcccCC--CCCCCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHH
Q 037898 7 AGSYSA--QLPQSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVG 84 (287)
Q Consensus 7 ~~~~~~--~~~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~ 84 (287)
+|.|.- +.-.+|.++|.+|+.+|..-..+|..++.-. -++.++..+..|+..|..
T Consensus 70 ~~~~~~~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~-----------------------~~~~~~~~~~~i~~~Ea~ 126 (137)
T PF13668_consen 70 PPAYDFPFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQI-----------------------EDPELKALAASIAGVEAR 126 (137)
T ss_pred CCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------------CCHHHHHHHHHHHHHHHH
Confidence 444443 2334789999999999999999999886310 158899999999999999
Q ss_pred HHHHHHHhhc
Q 037898 85 HLKAIKKTVK 94 (287)
Q Consensus 85 HV~~L~~aLg 94 (287)
|...||..|+
T Consensus 127 H~~~ir~ll~ 136 (137)
T PF13668_consen 127 HAAWIRNLLG 136 (137)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 14
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=93.54 E-value=0.26 Score=41.65 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=47.0
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 037898 16 QSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTV 93 (287)
Q Consensus 16 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aL 93 (287)
.+..++|.+++.+|.=-.+||...+.- --|+.+++++++|..+|..|.+.|++.|
T Consensus 100 ~~~~~~L~~~~~~E~~ai~~Y~~~~~~-----------------------~~d~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 100 ESIKEMLKLDIASEKAAIAKYKRQAET-----------------------IKDPYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 356779999999999999999998631 1368899999999999999999998754
No 15
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=93.25 E-value=0.33 Score=38.62 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=47.1
Q ss_pred CCCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHh
Q 037898 15 PQSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKT 92 (287)
Q Consensus 15 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~a 92 (287)
..++.++|..|+..|---.+||...+.. ..++.++.++++|..+|..|+..|+..
T Consensus 84 ~~~~~~~l~~a~~~E~~~~~~Y~~~~~~-----------------------~~d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 84 LMDPLEALRLAIEIEKDAIEFYEELAEK-----------------------AEDPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999999998632 125789999999999999999999863
No 16
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=93.14 E-value=1.1 Score=38.86 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc---C--CCCccccCCcchHHHHHHHhcCCCCCCC-CCCCCChHHHHHHHhhcc
Q 037898 68 DAFANDVVLQFAWQEVGHLKAIKKTVK---G--FPRPLLDLSAGTFAKVMDKAFGKPLNPP-FDPYANSINYLIASYLIP 141 (287)
Q Consensus 68 ~~~~~~~~~eia~~E~~HV~~L~~aLg---a--v~~P~id~s~~~F~~~~~~A~g~~l~p~-FdPy~n~~~FL~~A~~~E 141 (287)
++.+++.+.+|+.+|..|+..|-..+. + ...|- + ++ .++-.|...-|......|
T Consensus 52 ~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw---~-----------------~~yv~~~~d~~~~L~~ni~aE 111 (156)
T cd01051 52 DPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPW---T-----------------AAYIQSSGNLVADLRSNIAAE 111 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC---C-----------------CcccCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998765 1 11221 1 12 233356667888888889
Q ss_pred chhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037898 142 YVGLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVIRALLYE 184 (287)
Q Consensus 142 ~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~ 184 (287)
.-+..-|.=....++|+.++....-|+.-|-.|.-.++.+|.+
T Consensus 112 ~~Ai~~Y~~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~ 154 (156)
T cd01051 112 SRARLTYERLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALES 154 (156)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888764
No 17
>PRK10635 bacterioferritin; Provisional
Probab=91.35 E-value=5.8 Score=34.48 Aligned_cols=126 Identities=19% Similarity=0.213 Sum_probs=92.6
Q ss_pred hhhhhhhHhHHHHHHHHHHhhh---hCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhh--
Q 037898 19 IDLLEFPLNLEYLEAEFFLFGS---LGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTV-- 93 (287)
Q Consensus 19 ~diLNFALnLEyLEa~FY~~a~---~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aL-- 93 (287)
++.||=+|+.|+.-..=|..-+ .++| ++. ....+..-+.+|..|...|-.-|
T Consensus 8 i~~LN~~L~~El~Ai~QY~~ha~~~~~~G----------------------~~~-la~~~~~ea~eEm~HA~~l~eRIl~ 64 (158)
T PRK10635 8 INYLNKLLGNELVAINQYFLHARMFKNWG----------------------LMR-LNDVEYHESIDEMKHADKYIERILF 64 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------------------cHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999988774432 2222 222 22333333889999999888765
Q ss_pred -cCCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhcccccc---CCChhHHHHHHhHHH
Q 037898 94 -KGFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPR---LQDATSKRLVAGLLG 169 (287)
Q Consensus 94 -gav~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~---l~~~~~l~aAa~Il~ 169 (287)
|+.| .++- + ++..+-.|....|......|.-.+.-|.=+... ..++..+.+...|+.
T Consensus 65 LgG~P--~~~~----------------~-~~~~~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~ 125 (158)
T PRK10635 65 LEGIP--NLQD----------------L-GKLNIGEDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIEILA 125 (158)
T ss_pred cCCCC--CCCC----------------C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3433 2211 0 122334688999999999999999999988876 567888999999999
Q ss_pred hhhhhHHHHHHHHHhhh
Q 037898 170 VESGQDAVIRALLYEKA 186 (287)
Q Consensus 170 VEA~Haa~IR~lL~~~~ 186 (287)
-|-.|.-++.+.|....
T Consensus 126 dEe~H~~~le~~l~~i~ 142 (158)
T PRK10635 126 DEEGHIDWLETELDLIG 142 (158)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988654
No 18
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=88.43 E-value=1.2 Score=35.51 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=44.8
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHh
Q 037898 17 SDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKT 92 (287)
Q Consensus 17 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~a 92 (287)
+...+|..|+..|---..||...+.. .-++.+++++.+|+.+|..|++.|+..
T Consensus 84 ~~~~~l~~a~~~E~~~~~~Y~~~a~~-----------------------~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 84 NLEEALEMAIKEEKDAYEFYAELARK-----------------------APDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHH-----------------------TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35778999999999999999998632 126889999999999999999999864
No 19
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=88.40 E-value=13 Score=30.67 Aligned_cols=126 Identities=13% Similarity=-0.064 Sum_probs=90.3
Q ss_pred chhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CC
Q 037898 18 DIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK-GF 96 (287)
Q Consensus 18 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg-av 96 (287)
..+.||=|+.-|+-....|..-+.- ++.-++ +.+.+.+..++..|..|..-+.+.|. -.
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~-------------------a~~~g~-~~~a~~f~~~a~eE~~HA~~~~~~l~~l~ 61 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEK-------------------ARKEGY-EQIARLFRATAENEKEHAKGHFKLLKGLG 61 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHH-------------------HHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3578999999999988888664321 112223 55788899999999999998888876 11
Q ss_pred CCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccch-hHHhhccccc---cCCChhHHHHHHhHHHhhh
Q 037898 97 PRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYV-GLTGYVGANP---RLQDATSKRLVAGLLGVES 172 (287)
Q Consensus 97 ~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~V-GvtAY~Gaap---~l~~~~~l~aAa~Il~VEA 172 (287)
..|. +|-.++.+...-|..+.--|.- ....|.-.+. .-.+..+....-.|+..|.
T Consensus 62 g~~~---------------------~~~~~~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~ 120 (134)
T cd01041 62 GGDT---------------------GPPIGIGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEK 120 (134)
T ss_pred CCCc---------------------CCCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2222 1223456777788888888873 5577765554 4556778888889999999
Q ss_pred hhHHHHHHHHHh
Q 037898 173 GQDAVIRALLYE 184 (287)
Q Consensus 173 ~Haa~IR~lL~~ 184 (287)
+|.-++..+|..
T Consensus 121 ~H~~~l~~~l~~ 132 (134)
T cd01041 121 VHAERYKKALEN 132 (134)
T ss_pred HHHHHHHHHhhc
Confidence 999999988764
No 20
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=87.87 E-value=6.1 Score=33.49 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=95.4
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC
Q 037898 19 IDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK-GFP 97 (287)
Q Consensus 19 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg-av~ 97 (287)
++.||=.+...|=--++|..++.-. =++..+.++++++.+...|+.-|+..+. -..
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~v-----------------------~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg 58 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEEV-----------------------KDPELATLFRRIAGEKSAIVSELQQVVASLGG 58 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHC-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5678888888888889999987321 2588999999999999999999999886 122
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccC-CChhHHHHHHhHHHhhhhhHH
Q 037898 98 RPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRL-QDATSKRLVAGLLGVESGQDA 176 (287)
Q Consensus 98 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l-~~~~~l~aAa~Il~VEA~Haa 176 (287)
.|.- .++|...+..+.- .+...|.+ .++..+|....-=|+..+.+|.-+...- -.++++...-..+.-+-+|-.
T Consensus 59 ~p~~---~gs~~g~lhr~w~-~lks~~~~-~~d~aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d 133 (139)
T TIGR02284 59 KPED---HGSMVGSLHQFWG-KIRATLTP-NDDYVVLEEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHD 133 (139)
T ss_pred CCCC---CCcHHHHHHHHHH-HHHHHHcC-CChHHHHHHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Confidence 3432 1344444333310 00001211 4677899999999999999999988765 567778887777777777777
Q ss_pred HHHHH
Q 037898 177 VIRAL 181 (287)
Q Consensus 177 ~IR~l 181 (287)
+||.+
T Consensus 134 ~i~~l 138 (139)
T TIGR02284 134 VIRAL 138 (139)
T ss_pred HHHhc
Confidence 77754
No 21
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=86.32 E-value=3.3 Score=31.05 Aligned_cols=56 Identities=14% Similarity=0.020 Sum_probs=45.8
Q ss_pred CCCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 037898 15 PQSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTV 93 (287)
Q Consensus 15 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aL 93 (287)
..++.++|..++..|---..+|...... + -++.+++++..+..+|..|+..++..+
T Consensus 75 ~~~~~~~l~~~~~~E~~~~~~y~~~~~~----------------------~-~d~~~~~~~~~~~~~E~~H~~~~~~~~ 130 (130)
T cd00657 75 SDDPAEALRAALEVEARAIAAYRELIEQ----------------------A-DDPELRRLLERILADEQRHAAWFRKLL 130 (130)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHh----------------------c-CChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3566789999999999999999877522 1 168899999999999999999998753
No 22
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=85.63 E-value=24 Score=31.27 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=92.8
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CC
Q 037898 19 IDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK--GF 96 (287)
Q Consensus 19 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg--av 96 (287)
.+-|-|.+-=|+|.-..|..-...|| ..++..|+.-|+.|...++..+. ++
T Consensus 2 ~~~Ll~m~EEEKlArDvY~~l~~~~g---------------------------~~~F~NIa~SEq~Hmdav~~Ll~kY~l 54 (162)
T PF09968_consen 2 IEGLLYMREEEKLARDVYLTLYEKWG---------------------------LPIFNNIARSEQRHMDAVKALLEKYGL 54 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC---------------------------ChHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45688999999999999988764433 36688999999999999999998 88
Q ss_pred CCccccCCcchHHH-----HHHHh--cCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHhHHH
Q 037898 97 PRPLLDLSAGTFAK-----VMDKA--FGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLG 169 (287)
Q Consensus 97 ~~P~id~s~~~F~~-----~~~~A--~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~ 169 (287)
+-|.-+...+.|+. +-+.. -|. .+...=|.....+|.+-..=+.-+...-.|++++..=-.++.
T Consensus 55 ~dP~~~~~~G~f~~~~lq~LY~~Lv~~G~---------~S~~dAl~vga~iEe~dI~DL~~~l~~t~~~Di~~Vy~nL~~ 125 (162)
T PF09968_consen 55 EDPVEGDPVGVFTNPELQELYNQLVEQGS---------KSLEDALKVGALIEELDIADLEEALARTDNEDIKTVYENLRR 125 (162)
T ss_dssp --S-SS-STT--SSHHHHHHHHHHHHHHT---------S-HHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred CCCCccCCCCCcCcHHHHHHHHHHHHHhh---------hcHHHHHHHhHHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 88887765555541 11111 011 244556677888898888888888888888888777777776
Q ss_pred hhhhhHHHHHHHHHhhhhcccCCCcccHHHHHHHH
Q 037898 170 VESGQDAVIRALLYEKANETVKPYGVTVAEFTNKM 204 (287)
Q Consensus 170 VEA~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~I 204 (287)
--..|-......|-..+. .-.|--++-.+|-.-|
T Consensus 126 gS~NHLrAF~r~L~~~g~-~Y~pq~ls~~e~~~i~ 159 (162)
T PF09968_consen 126 GSRNHLRAFVRQLERYGV-TYTPQYLSQEEFEAIL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHTT------SSS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CCCCeecCHHHHHHHH
Confidence 655775544444555553 4566667777765444
No 23
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=82.30 E-value=29 Score=29.32 Aligned_cols=130 Identities=17% Similarity=0.063 Sum_probs=92.2
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC
Q 037898 19 IDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK-GFP 97 (287)
Q Consensus 19 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg-av~ 97 (287)
++.||=+|+-||.-...|..-..-. . .-++ +.....+...+.+|..|..-|-.-|- --.
T Consensus 8 ~~~LN~~l~~E~~a~~~Y~~~~~~~--~-----------------~~~~-~g~a~~~~~~a~EE~~Ha~~laeri~~lGg 67 (157)
T TIGR00754 8 IQHLNKQLTNELTAINQYFLHARMQ--K-----------------NWGL-KELADHEYHESIDEMKHADEIIERILFLEG 67 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H-----------------cCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 6889999999997776665543211 0 0111 33556778888899999999887664 112
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccc---cCCChhHHHHHHhHHHhhhhh
Q 037898 98 RPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANP---RLQDATSKRLVAGLLGVESGQ 174 (287)
Q Consensus 98 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap---~l~~~~~l~aAa~Il~VEA~H 174 (287)
.|.+. . +. +..+-.+....+....-.|......|..... ...++......-.|+.-|-.|
T Consensus 68 ~p~~~--~--------------i~-~~~~~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~eee~h 130 (157)
T TIGR00754 68 LPNLQ--D--------------LG-KLRIGETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEEILEDEEEH 130 (157)
T ss_pred CCCCC--c--------------CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 23221 0 11 1222357778899999999999999998854 677888888888999999999
Q ss_pred HHHHHHHHHhh
Q 037898 175 DAVIRALLYEK 185 (287)
Q Consensus 175 aa~IR~lL~~~ 185 (287)
.-++|+.|...
T Consensus 131 ~~~l~~~l~~~ 141 (157)
T TIGR00754 131 IDWLETQLELI 141 (157)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 24
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=79.33 E-value=5 Score=44.35 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=47.1
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHH-HHHHHHHHHHhHHHHHHHHHHhhc
Q 037898 16 QSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAF-ANDVVLQFAWQEVGHLKAIKKTVK 94 (287)
Q Consensus 16 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~-~~~~~~eia~~E~~HV~~L~~aLg 94 (287)
.++.++|.+|+-.|.=--+||...+... -|+. .+.++.+|+..|..|++.|++.+.
T Consensus 940 ~~~~~al~lAm~~Ekdai~fY~~la~~~-----------------------~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d 996 (1006)
T PRK12775 940 DDPGNLFRIAIEFERRAVKFFKERVAET-----------------------PDGSVERQLYKELAAEEREHVALLTTEFE 996 (1006)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhC-----------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999986321 1344 699999999999999999998774
No 25
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=78.22 E-value=37 Score=27.92 Aligned_cols=115 Identities=12% Similarity=0.041 Sum_probs=82.1
Q ss_pred hhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCc
Q 037898 20 DLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVKGFPRP 99 (287)
Q Consensus 20 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLgav~~P 99 (287)
+-||=+++-|.-+...|..-+.- ++.-++ +.+...+..++..|..|...+.+.++.++
T Consensus 4 ~~L~~a~~~E~~a~~~Y~~~a~~-------------------a~~eG~-~~~A~~f~~~a~eE~~HA~~~~~~l~~i~-- 61 (123)
T cd01046 4 EDLEANFKGETTEVGMYLAMARV-------------------AQREGY-PEVAEELKRIAMEEAEHAARFAELLGKVS-- 61 (123)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH-------------------HHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCc--
Confidence 56899999999999999765421 112233 55889999999999999999999886543
Q ss_pred cccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhcccc---ccCCChhHHHHHHhHHHhhhhhHH
Q 037898 100 LLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGAN---PRLQDATSKRLVAGLLGVESGQDA 176 (287)
Q Consensus 100 ~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaa---p~l~~~~~l~aAa~Il~VEA~Haa 176 (287)
.|...-|..+.--|.-.+..|...+ -.-.+.+....--.|+.+|..|.-
T Consensus 62 ----------------------------~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~ 113 (123)
T cd01046 62 ----------------------------EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGK 113 (123)
T ss_pred ----------------------------ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 1233344555555555555555433 344567778888899999999999
Q ss_pred HHHHHHHh
Q 037898 177 VIRALLYE 184 (287)
Q Consensus 177 ~IR~lL~~ 184 (287)
+++.+|..
T Consensus 114 ~~~~~l~~ 121 (123)
T cd01046 114 MLKGLLER 121 (123)
T ss_pred HHHHHHhh
Confidence 99988764
No 26
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=78.14 E-value=5.4 Score=32.98 Aligned_cols=58 Identities=17% Similarity=-0.008 Sum_probs=45.5
Q ss_pred CchhhhhhhHhHHHHHH-HHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037898 17 SDIDLLEFPLNLEYLEA-EFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK 94 (287)
Q Consensus 17 ~D~diLNFALnLEyLEa-~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg 94 (287)
+..++|..++..|.-|+ +.|...+.-. ...=|..+.+.+++|..+|..|++.|+..|+
T Consensus 73 ~~~~~l~~~~~~E~~e~~~~y~~~~~~A--------------------~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 73 DTLENLKAAIAGETYEYTEMYPEFAEVA--------------------EEEGFKEAARSFEAIAEAEKVHAERYKKALE 131 (134)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHH--------------------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44689999999999877 7777664210 0112678999999999999999999999875
No 27
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=73.19 E-value=13 Score=32.89 Aligned_cols=105 Identities=15% Similarity=0.125 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHH
Q 037898 68 DAFANDVVLQFAWQEVGHLKAIKKTVK-GFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLT 146 (287)
Q Consensus 68 ~~~~~~~~~eia~~E~~HV~~L~~aLg-av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvt 146 (287)
++.++..+++++.+|..|+....+.|. --.||.+-.. -| .++.-++|. .-....+...+..-...|.+-..
T Consensus 28 ~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~P--lW-~~~gf~lG~-----~tal~G~~~a~~~~~avE~~V~~ 99 (165)
T cd01042 28 DPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLP--LW-YVAGFALGA-----LTALLGKKAAMACTAAVETVVEE 99 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHH--HH-HHHHHHHHH-----HHHhhChHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999987 3445543221 11 111111110 00012344455666677888888
Q ss_pred hhccccccCC---ChhHHHHHHhHHHhhhhhHHHHHH
Q 037898 147 GYVGANPRLQ---DATSKRLVAGLLGVESGQDAVIRA 180 (287)
Q Consensus 147 AY~Gaap~l~---~~~~l~aAa~Il~VEA~Haa~IR~ 180 (287)
=|......|. ++.++.....+.--|..|.-.-..
T Consensus 100 Hy~~ql~~L~~~~d~~l~~~l~~~r~DE~~H~d~A~~ 136 (165)
T cd01042 100 HYNDQLRELPAQPDKELRAIIEQFRDDELEHADIAEE 136 (165)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988887 788999999999999999865443
No 28
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=72.94 E-value=54 Score=27.32 Aligned_cols=129 Identities=14% Similarity=0.064 Sum_probs=78.3
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC
Q 037898 19 IDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK-GFP 97 (287)
Q Consensus 19 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg-av~ 97 (287)
++.||=+++.|+--...|+.-+.-+ + +.++ +.+...++..+.+|..|..-+-+-+- --.
T Consensus 5 ~~~Ln~~~~~El~A~~~Yl~~a~~~--~-----------------~~~~-~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg 64 (156)
T cd01055 5 EKALNEQINLELYSSYLYLAMAAWF--D-----------------SKGL-DGFANFFRVQAQEEREHAMKFFDYLNDRGG 64 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--h-----------------hcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4679999999999999997754221 1 1122 56888999999999999998887763 111
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhcccccc---CCChhHHHHHHhHHHhhhhh
Q 037898 98 RPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPR---LQDATSKRLVAGLLGVESGQ 174 (287)
Q Consensus 98 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~---l~~~~~l~aAa~Il~VEA~H 174 (287)
.|.+.- +.++-..+.+....|..+.-.|.--...|.-.... ..++......-.|+..|..|
T Consensus 65 ~~~~~~----------------~~~~~~~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e~ 128 (156)
T cd01055 65 RVELPA----------------IEAPPSEFESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQWFVKEQVEE 128 (156)
T ss_pred CeeCCC----------------CCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHH
Confidence 121110 00011124577788888888888877777654433 23444444444455555555
Q ss_pred HHHHHHHHH
Q 037898 175 DAVIRALLY 183 (287)
Q Consensus 175 aa~IR~lL~ 183 (287)
...++.++.
T Consensus 129 ~~~~~~~l~ 137 (156)
T cd01055 129 EALARDILD 137 (156)
T ss_pred HHHHHHHHH
Confidence 544444444
No 29
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=70.52 E-value=51 Score=26.05 Aligned_cols=132 Identities=18% Similarity=0.184 Sum_probs=93.5
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc---C
Q 037898 19 IDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK---G 95 (287)
Q Consensus 19 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg---a 95 (287)
++.||-++++|+--...|..-..=. . | .++ +.+..++++.+.+|..|..-+..-+. +
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~---------~--~--------~~~-~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg 60 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNF---------D--G--------PNF-PGLAKFFQDQAEEEREHADELAERILMLGG 60 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------H--S--------TTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh---------c--C--------CCc-hhhHHHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4689999999999988887764210 0 0 111 56889999999999999999987754 4
Q ss_pred CCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccC---CChhHHHHHHhHHHhhh
Q 037898 96 FPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRL---QDATSKRLVAGLLGVES 172 (287)
Q Consensus 96 v~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l---~~~~~l~aAa~Il~VEA 172 (287)
.|.... ..+..+ + .|+= +.+...-|..+.-.|......|....... .++......-.++.-|.
T Consensus 61 ~p~~~~----~~~~~~-------~-~~~~--~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~ 126 (142)
T PF00210_consen 61 KPSGSP----VEIPEI-------P-KPPE--WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEE 126 (142)
T ss_dssp -SSTSH----HHHHHH-------H-SSSS--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CCCCcH----HHhhhh-------h-cccc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 443321 112211 0 0111 56888999999889999999998887766 57777788888888888
Q ss_pred hhHHHHHHHHHh
Q 037898 173 GQDAVIRALLYE 184 (287)
Q Consensus 173 ~Haa~IR~lL~~ 184 (287)
.|.-.++..|..
T Consensus 127 ~~~~~l~~~l~~ 138 (142)
T PF00210_consen 127 KHIWMLQAHLTN 138 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877764
No 30
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=68.94 E-value=13 Score=27.70 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHhhhhcccCCCcccHHHHHHHHHHHHHhhC
Q 037898 172 SGQDAVIRALLYEKANETVKPYGVTVAEFTNKMSQLRNVLG 212 (287)
Q Consensus 172 A~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~IS~lR~~L~ 212 (287)
+.|++.+|+|.-+.++. + |-++|.+|...+|-.||.+.+
T Consensus 18 ~aQ~syL~tL~e~Age~-~-~~~LtkaeAs~rId~L~~~~g 56 (57)
T PF11272_consen 18 GAQASYLKTLSEEAGEP-F-PDDLTKAEASERIDELQAQTG 56 (57)
T ss_pred HHHHHHHHHHHHHhCCC-C-CCcccHHHHHHHHHHHHHHhC
Confidence 56889999998887733 2 338999999999999999876
No 31
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=65.24 E-value=57 Score=28.99 Aligned_cols=134 Identities=18% Similarity=0.183 Sum_probs=87.4
Q ss_pred hhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCH-HHHHHHHHHHHhHHHHHHHHHHhhc----C
Q 037898 21 LLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDA-FANDVVLQFAWQEVGHLKAIKKTVK----G 95 (287)
Q Consensus 21 iLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~-~~~~~~~eia~~E~~HV~~L~~aLg----a 95 (287)
.|=-|..-|+.-.-||+.-... ..++.. ..+.++++-...-..|.+.|..-|- .
T Consensus 21 ~Llka~AaE~tt~YYYtilr~~---------------------l~Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~ 79 (172)
T COG2406 21 LLLKAAAAEWTTYYYYTILRYA---------------------LKGLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGD 79 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444556688777777654321 011333 3555566656666789999988775 3
Q ss_pred CCCc---cccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCC--hhHHHHHHhHHHh
Q 037898 96 FPRP---LLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRLQD--ATSKRLVAGLLGV 170 (287)
Q Consensus 96 v~~P---~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~--~~~l~aAa~Il~V 170 (287)
.||- ..|+|++.-+ .| |=||| |...+|.+.--=|--.+.+|+=.-.+-.+ +..-.+|-.||--
T Consensus 80 ~Prd~~~l~dISgC~~a---------~L--Pedp~-D~~~~l~vlv~AE~CAir~ykeic~~T~GkDprTyeLa~~IL~e 147 (172)
T COG2406 80 LPRDMKKLHDISGCKPA---------YL--PEDPY-DIDEILAVLVKAERCAIRAYKEICNLTAGKDPRTYELAEAILRE 147 (172)
T ss_pred CchhHHHHHhhcCCCCC---------CC--CCCcc-CHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHH
Confidence 3332 2344432110 11 34554 45678888888899999999977665544 4477899999999
Q ss_pred hhhhHHHHHHHHHhhhh
Q 037898 171 ESGQDAVIRALLYEKAN 187 (287)
Q Consensus 171 EA~Haa~IR~lL~~~~~ 187 (287)
|-.|.+|+-.+|++.+.
T Consensus 148 Ei~hr~~~~~ll~~~~s 164 (172)
T COG2406 148 EIEHRTWFLELLGKEPS 164 (172)
T ss_pred HHHHHHHHHHHhccCch
Confidence 99999999999998654
No 32
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=64.84 E-value=63 Score=27.44 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHhhc--C----CCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhh
Q 037898 66 NLDAFANDVVLQFAWQEVGHLKAIKKTVK--G----FPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYL 139 (287)
Q Consensus 66 ~l~~~~~~~~~eia~~E~~HV~~L~~aLg--a----v~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~ 139 (287)
.+++..++.+.+...........|...|. + .+.|.|.+ || |-+|+.+-+..+..
T Consensus 22 ~~~~~~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~~aaY~l-------------------P~-~v~d~~sa~~la~~ 81 (131)
T PF14530_consen 22 RLDGDRRAAARAALAAHRARRDALAAALRAAGATPPPPEAAYQL-------------------PF-PVTDPASAAALAAA 81 (131)
T ss_dssp HS-GGGHHHHHHHHHHHHHHHHHHHHHHHHTT-------SS----------------------SS----SHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC-------------------CC-CCCCHHHHHHHHHH
Confidence 34566777777777777777788888776 1 23334443 45 45788888888889
Q ss_pred ccchhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHH
Q 037898 140 IPYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVIRALLY 183 (287)
Q Consensus 140 ~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~ 183 (287)
+|+=-..+|.... .-++.+.++.+...|..-+.-+.-.|..+.
T Consensus 82 lE~~~a~aw~~lv-~a~~~~~R~~av~aL~~aA~ra~~W~~~~g 124 (131)
T PF14530_consen 82 LEDDCAAAWRALV-AATDPALRRFAVDALTEAAVRAARWRAAAG 124 (131)
T ss_dssp HHHHHHHHHHHHH-H--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHHHhccccC
Confidence 9998899999988 888889999888888776665555554443
No 33
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=64.63 E-value=25 Score=29.45 Aligned_cols=55 Identities=18% Similarity=0.012 Sum_probs=47.1
Q ss_pred CCCCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHH
Q 037898 14 LPQSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKK 91 (287)
Q Consensus 14 ~~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~ 91 (287)
...+|.+.|+.|...|-.-.+||...+... -++.++.++..++.-|..|.+..-+
T Consensus 79 ~~~s~~~al~~g~~~E~~~i~~ye~~~~~~-----------------------~d~d~k~v~~~L~~~e~~H~~~f~~ 133 (135)
T cd01048 79 GPKSLQDALEVGVLIEELDIADYDRLLERT-----------------------QNPDIRDVFENLQAASRNHHLPFFR 133 (135)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999987421 2588999999999999999886543
No 34
>PRK13456 DNA protection protein DPS; Provisional
Probab=61.85 E-value=31 Score=31.31 Aligned_cols=68 Identities=19% Similarity=0.106 Sum_probs=54.1
Q ss_pred CcccCCCCC-CCc-hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHH
Q 037898 7 AGSYSAQLP-QSD-IDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVG 84 (287)
Q Consensus 7 ~~~~~~~~~-~~D-~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~ 84 (287)
.|+|.+... ++| .++|+=.|.-|.-.-+-|..-..= + ...|+.+++++.+|-.+|..
T Consensus 95 ~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~----------~-----------~~kDp~T~~l~~~IL~dE~e 153 (186)
T PRK13456 95 ACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDM----------T-----------AGKDPRTYDLALAILQEEIE 153 (186)
T ss_pred cCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH----------H-----------hcCCccHHHHHHHHHHHHHH
Confidence 566765533 445 679999999999999999887521 1 12478999999999999999
Q ss_pred HHHHHHHhhcC
Q 037898 85 HLKAIKKTVKG 95 (287)
Q Consensus 85 HV~~L~~aLga 95 (287)
|-+-|++.|++
T Consensus 154 H~~dl~~lL~~ 164 (186)
T PRK13456 154 HEAWFSELLGG 164 (186)
T ss_pred HHHHHHHHHhc
Confidence 99999999973
No 35
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=58.48 E-value=14 Score=36.54 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=50.6
Q ss_pred HHHHHHHhhccchhHHhhccccccCC--ChhHHHHHHhHHHhhhhhHHHHHHHHHhhh
Q 037898 131 INYLIASYLIPYVGLTGYVGANPRLQ--DATSKRLVAGLLGVESGQDAVIRALLYEKA 186 (287)
Q Consensus 131 ~~FL~~A~~~E~VGvtAY~Gaap~l~--~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~ 186 (287)
.+||.-|-+=|--|---|+=....++ ||.+.+.-.=+.-.||||+|.|+-.+..-+
T Consensus 85 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~ 142 (355)
T PRK13654 85 IDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFG 142 (355)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcC
Confidence 57999999999999999999999998 899989888888999999999998887643
No 36
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=57.86 E-value=34 Score=30.38 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=48.2
Q ss_pred CCCCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 037898 14 LPQSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTV 93 (287)
Q Consensus 14 ~~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aL 93 (287)
.+.+..+.|.+|.-.|.---+||...+.. -.+..++.++++++.||.+|++.|++-+
T Consensus 110 ~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~-----------------------~~~~~~~~~~~~~a~~E~~H~~~l~~~~ 166 (176)
T COG1633 110 KSVSYLEAIEAAMEAEKDTIEFYEELLDE-----------------------LVNEEAKKLFKTIADDEKGHASGLLSLY 166 (176)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------ccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566889999999999999999988632 1357788999999999999999999866
Q ss_pred c
Q 037898 94 K 94 (287)
Q Consensus 94 g 94 (287)
.
T Consensus 167 ~ 167 (176)
T COG1633 167 N 167 (176)
T ss_pred H
Confidence 4
No 37
>PRK10635 bacterioferritin; Provisional
Probab=57.27 E-value=27 Score=30.31 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=48.7
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037898 16 QSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK 94 (287)
Q Consensus 16 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg 94 (287)
.+-.++|...|.+|+=-.+-|..++.= + ...-|...++++++|-.+|..|...|++.|+
T Consensus 81 ~~v~eml~~dl~~E~~ai~~y~e~i~~----------a----------~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 81 EDVEEMLRSDLRLELEGAKDLREAIAY----------A----------DSVHDYVSRDMMIEILADEEGHIDWLETELD 139 (158)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH----------H----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344789999999999999999998631 0 0124788999999999999999999999886
No 38
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=56.93 E-value=14 Score=35.97 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=49.8
Q ss_pred HHHHHHHhhccchhHHhhccccccCCC--hhHHHHHHhHHHhhhhhHHHHHHHHHhhh
Q 037898 131 INYLIASYLIPYVGLTGYVGANPRLQD--ATSKRLVAGLLGVESGQDAVIRALLYEKA 186 (287)
Q Consensus 131 ~~FL~~A~~~E~VGvtAY~Gaap~l~~--~~~l~aAa~Il~VEA~Haa~IR~lL~~~~ 186 (287)
.+||.-|-+=|--|---|+=....++| |.+.+.-.=+.-.||||+|.|+-.+..-+
T Consensus 65 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~ 122 (323)
T cd01047 65 LEFLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFN 122 (323)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcC
Confidence 479999999999999999999999966 88888888888899999999998877643
No 39
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=55.55 E-value=32 Score=28.27 Aligned_cols=59 Identities=22% Similarity=0.017 Sum_probs=46.1
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037898 16 QSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK 94 (287)
Q Consensus 16 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg 94 (287)
.+-.++|+-++..|.-+..-|...+.- +++ -=|..+.+.+..++.+|..|++.++.+|.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~-------------------A~~-egd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATE-------------------AKA-EGLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHH-------------------HHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999999988655410 001 11578999999999999999999999875
No 40
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=52.25 E-value=39 Score=27.89 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=47.8
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037898 17 SDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK 94 (287)
Q Consensus 17 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg 94 (287)
+..++|+.++..|.--.+-|.....- + ...-|+.+.++++.|..+|..|..+|++.++
T Consensus 81 ~~~~~l~~~l~~E~~~~~~y~~~~~~----------A----------~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~ 138 (153)
T cd00907 81 DVPEMLENDLALEYEAIAALNEAIAL----------C----------EEVGDYVSRDLLEEILEDEEEHIDWLETQLD 138 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH----------H----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999887420 0 0123788999999999999999999999886
No 41
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=51.33 E-value=19 Score=35.33 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=48.5
Q ss_pred HHHHHHHhhccchhHHhhccccccCCChh--HHHHHHhHHHhhhhhHHHHHHHHHhhh
Q 037898 131 INYLIASYLIPYVGLTGYVGANPRLQDAT--SKRLVAGLLGVESGQDAVIRALLYEKA 186 (287)
Q Consensus 131 ~~FL~~A~~~E~VGvtAY~Gaap~l~~~~--~l~aAa~Il~VEA~Haa~IR~lL~~~~ 186 (287)
.+||.-|-+=|--|---|+=....++|++ +.+.-.=+.-.||||+|.|+-.+..-+
T Consensus 75 idFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df~ 132 (337)
T TIGR02029 75 IEFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDFG 132 (337)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHcC
Confidence 47999999999999999999999996655 778888888889999999998887643
No 42
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=50.92 E-value=20 Score=35.33 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=49.1
Q ss_pred HHHHHHHhhccchhHHhhccccccCCC--hhHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037898 131 INYLIASYLIPYVGLTGYVGANPRLQD--ATSKRLVAGLLGVESGQDAVIRALLYEK 185 (287)
Q Consensus 131 ~~FL~~A~~~E~VGvtAY~Gaap~l~~--~~~l~aAa~Il~VEA~Haa~IR~lL~~~ 185 (287)
.+||.-|-+=|--|---|+=....|+| |.+.+.-.=+.-.||||+|.|+-.+..-
T Consensus 81 idFLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 137 (351)
T CHL00185 81 VEFLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDF 137 (351)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 479999999999999999999999955 8888888888889999999999888764
No 43
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=49.16 E-value=84 Score=27.26 Aligned_cols=55 Identities=15% Similarity=-0.030 Sum_probs=46.5
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037898 17 SDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK 94 (287)
Q Consensus 17 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg 94 (287)
+-..+|...+..|.--..-|.+-..- . -|+.+++++..|..+|..|...++++|.
T Consensus 99 d~~~~L~~ni~aE~~Ai~~Y~~l~~~----------------------~-~Dp~v~~~l~~I~~rE~~H~~~f~~~l~ 153 (156)
T cd01051 99 NLVADLRSNIAAESRARLTYERLYEM----------------------T-DDPGVKDTLSFLLVREIVHQNAFGKALE 153 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH----------------------c-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33678889999999999999886521 1 1799999999999999999999999875
No 44
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=49.13 E-value=19 Score=35.50 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=49.0
Q ss_pred HHHHHHHhhccchhHHhhccccccCCC--hhHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037898 131 INYLIASYLIPYVGLTGYVGANPRLQD--ATSKRLVAGLLGVESGQDAVIRALLYEK 185 (287)
Q Consensus 131 ~~FL~~A~~~E~VGvtAY~Gaap~l~~--~~~l~aAa~Il~VEA~Haa~IR~lL~~~ 185 (287)
.+||.-|-+=|--|---|+=....|+| |.+.+.-.=+.-.||||++.|+-.+..-
T Consensus 81 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df 137 (357)
T PLN02508 81 IEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDF 137 (357)
T ss_pred HHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHc
Confidence 479999999999999999999999955 8888888888889999999999887764
No 45
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=48.19 E-value=73 Score=25.16 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=51.0
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC
Q 037898 19 IDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK-GFP 97 (287)
Q Consensus 19 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg-av~ 97 (287)
++.||=.|..++=-.+.|..++.- +. ++..+.++++++.+...|+.-|+..|. -..
T Consensus 3 i~~Ln~Ll~~~~d~~~~Y~~a~~~----------------------~~-~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg 59 (111)
T PF09537_consen 3 IEALNDLLKGLHDGIEGYEKAAEK----------------------AE-DPELKSLFQEFAQERQQHAEELQAEIQELGG 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------------CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 678999999999999999999731 11 689999999999999999999999987 223
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHH-HHHHHhhccchhHHhhccc
Q 037898 98 RPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSIN-YLIASYLIPYVGLTGYVGA 151 (287)
Q Consensus 98 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~-FL~~A~~~E~VGvtAY~Ga 151 (287)
.|.-+ ++|...+..+.- .+.--|. .++.. +|..+.-=|+.++.+|.=+
T Consensus 60 ~p~~~---gs~~g~~~r~~~-~ik~~~~--~~d~~aiL~~~~~gE~~~~~~y~~a 108 (111)
T PF09537_consen 60 EPEES---GSFKGALHRAWM-DIKSALG--GDDDEAILEECERGEDMALEAYEDA 108 (111)
T ss_dssp -H-------HHCHHHH-TTT-HHHHS-------H---------------------
T ss_pred CcCcc---cCHHHHHHHHHH-HHHHHhc--CCCccchhhhhhhhhhhhhhhcccc
Confidence 34322 234333333310 0000010 23343 6776777788888887643
No 46
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=45.38 E-value=53 Score=27.37 Aligned_cols=58 Identities=14% Similarity=-0.015 Sum_probs=47.0
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037898 17 SDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK 94 (287)
Q Consensus 17 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg 94 (287)
+-.++|.-+|++|.--.+-|.....= + ...-|+.+.+++++|..+|+.|++-+++.+.
T Consensus 80 ~~~~~l~~al~~E~~~~~~~~~l~~~----------A----------~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~ 137 (156)
T cd01055 80 SLLEVFEAALEHEQKVTESINNLVDL----------A----------LEEKDYATFNFLQWFVKEQVEEEALARDILD 137 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH----------H----------HHcCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999887521 0 0113688999999999999999999999887
No 47
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=45.06 E-value=38 Score=31.89 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCccccCCcchHHHHHHHhcCCCCCCCCC
Q 037898 68 DAFANDVVLQFAWQEVGHLKAIKKTVK-GFPRPLLDLSAGTFAKVMDKAFGKPLNPPFD 125 (287)
Q Consensus 68 ~~~~~~~~~eia~~E~~HV~~L~~aLg-av~~P~id~s~~~F~~~~~~A~g~~l~p~Fd 125 (287)
|....++++.|..+|++||++=.+=+. -..+...|-- ..|-.+++.-+...+.+|||
T Consensus 180 D~~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~~~~p~-~~f~~lv~~~~~~~~k~pfN 237 (253)
T PF04305_consen 180 DEESAAILEIILRDEIGHVAIGNRWFRYLCEQRGLDPW-ETFRELVRQYFRGKLKGPFN 237 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHH-HHHHHHHHHhCCCCCCCCCC
Confidence 567889999999999999987544443 2222222211 25888887777777888886
No 48
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=43.73 E-value=74 Score=25.13 Aligned_cols=58 Identities=17% Similarity=0.008 Sum_probs=47.6
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037898 17 SDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK 94 (287)
Q Consensus 17 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg 94 (287)
+-.++|.-+|..|.--.+.|.....- +. ..-|+.+.+++.++-.+|..|++.|++.|.
T Consensus 80 ~~~~~l~~~l~~e~~~~~~~~~l~~~----------a~----------~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~ 137 (142)
T PF00210_consen 80 DPREALEAALEDEKEIIEEYRELIKL----------AE----------KEGDPETADFLDEFLEEEEKHIWMLQAHLT 137 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH----------HH----------HTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH----------HH----------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55789999999999999999887521 00 013789999999999999999999998775
No 49
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=41.04 E-value=60 Score=28.85 Aligned_cols=53 Identities=19% Similarity=0.117 Sum_probs=45.5
Q ss_pred hhccchhHHhhccccccCC-ChhHHHHHHhHHHhhhhhHHHHHHHHHhhhhcccCCC
Q 037898 138 YLIPYVGLTGYVGANPRLQ-DATSKRLVAGLLGVESGQDAVIRALLYEKANETVKPY 193 (287)
Q Consensus 138 ~~~E~VGvtAY~Gaap~l~-~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~~~v~Py 193 (287)
-.-|.-.+.-|.|+.-.+. ++..+.....+...|..|-.+.+.++.+++ ++|.
T Consensus 11 HAGE~~A~~iY~gQ~~~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~---~RpS 64 (172)
T PF03232_consen 11 HAGEVGAVRIYRGQLAVARRDPELRPFLKEMAEEEKDHLAWFEQLLPELR---VRPS 64 (172)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHcC---CCCc
Confidence 3445566778999999999 999999999999999999999999999986 4563
No 50
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=39.66 E-value=51 Score=26.89 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=48.7
Q ss_pred HHHHhhccchhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHhhhhc
Q 037898 134 LIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVIRALLYEKANE 188 (287)
Q Consensus 134 L~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~~ 188 (287)
+...+-.|.-|..-|.-.+...+++..++.--.|...|-.|.-+++.++.+.+..
T Consensus 3 ~~~~~~~E~~~~~~Y~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~ 57 (125)
T cd01044 3 LRKFQKDEITEAAIYRKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVP 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3456677889999999999999999999999999999999999999999887644
No 51
>PF11220 DUF3015: Protein of unknown function (DUF3015); InterPro: IPR021383 This bacterial family of proteins has no known function.
Probab=38.93 E-value=65 Score=28.02 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=47.7
Q ss_pred HhhccchhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHhhhhcccCCCcccHHHHHHHHHH
Q 037898 137 SYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVIRALLYEKANETVKPYGVTVAEFTNKMSQ 206 (287)
Q Consensus 137 A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~IS~ 206 (287)
...+|.+---.-.|. =++|.+.+.+++|++.|.+.++..+.++-.+..+.-.+|-.++.++|-+
T Consensus 68 ~~n~d~La~DiA~G~------GE~L~ala~llgv~~~d~~~f~~~~q~nF~~if~s~~~t~~~v~~~i~~ 131 (144)
T PF11220_consen 68 NSNMDNLAQDIARGQ------GEHLDALAELLGVPAEDRAAFGAVLQENFASIFPSESVTSEEVLDNIVA 131 (144)
T ss_pred HHHHHHHHHHHHcCC------cchHHHHHHHhCCCHhhHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 344555555555554 3578899999999999999999999999888777667777776665544
No 52
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=37.20 E-value=59 Score=29.86 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCcc
Q 037898 68 DAFANDVVLQFAWQEVGHLKAIKKTVK-GFPRPL 100 (287)
Q Consensus 68 ~~~~~~~~~eia~~E~~HV~~L~~aLg-av~~P~ 100 (287)
++..+-.++|.++||+.|.....+-|- ---||.
T Consensus 69 ~~~~R~~l~em~d~E~~HL~~f~~~l~e~~vRPs 102 (204)
T COG2941 69 SPEPRIQLKEMADEEIDHLAWFEQRLLELGVRPS 102 (204)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 355667999999999999999988775 444564
No 53
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=36.65 E-value=87 Score=27.83 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHH
Q 037898 68 DAFANDVVLQFAWQEVGHLKAIKKTVK-GFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLT 146 (287)
Q Consensus 68 ~~~~~~~~~eia~~E~~HV~~L~~aLg-av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvt 146 (287)
++.++..++++..+|..|+..+++.|. --.||.+=.. -|. ++.-++|. .-...-+...+..-...|.+-..
T Consensus 31 ~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~P--lw~-~~g~~LG~-----~tal~G~~~~~a~t~avE~~V~~ 102 (172)
T PF03232_consen 31 DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNP--LWY-VAGFALGA-----LTALLGDKAAMACTAAVETVVEE 102 (172)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHH--HHH-HHHHHHHH-----HHHhhchHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999987 2335643110 111 11111110 00011233334444456666677
Q ss_pred hhccccccCC------ChhHHHHHHhHHHhhhhhH
Q 037898 147 GYVGANPRLQ------DATSKRLVAGLLGVESGQD 175 (287)
Q Consensus 147 AY~Gaap~l~------~~~~l~aAa~Il~VEA~Ha 175 (287)
=|......|. +++++.....+.--|..|.
T Consensus 103 Hy~~Ql~~L~~~~~~~d~~l~~~i~~~r~DE~~H~ 137 (172)
T PF03232_consen 103 HYNDQLRELPAMGEEEDPELRAIIEQFRDDELEHR 137 (172)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 7777776665 3456777777777777776
No 54
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=35.69 E-value=1.2e+02 Score=28.40 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHhhc--C----CCC-ccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhh
Q 037898 67 LDAFANDVVLQFAWQEVGHLKAIKKTVK--G----FPR-PLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYL 139 (287)
Q Consensus 67 l~~~~~~~~~eia~~E~~HV~~L~~aLg--a----v~~-P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~ 139 (287)
.+...+.++.+.-.+|.-|+....+.+. + ++. |.. ..+....+.... -+.+.....-++..+.+
T Consensus 110 ~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~-----~~~~~~~~~~~~~~~lv 180 (304)
T PF11583_consen 110 PDDDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPP----YPPRRLLRRLAR-----LLPPWERGLLFFAFALV 180 (304)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S------HHHHHHHHHHHT-----S-SHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCC----CchHHHHHHHHH-----hcccccchHHHHHHHHH
Confidence 3567788888888899999998888775 2 111 110 122222222211 12223334556667777
Q ss_pred ccchhHHhhccccccC--CChhHHHHHHhHHHhhhhhHHHHHHHHHhhhhc
Q 037898 140 IPYVGLTGYVGANPRL--QDATSKRLVAGLLGVESGQDAVIRALLYEKANE 188 (287)
Q Consensus 140 ~E~VGvtAY~Gaap~l--~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~~ 188 (287)
.|.+ ++.|.-....= ..|-++....-.+.-|+||.++-|..+...-..
T Consensus 181 ~Ee~-i~~~~~~~~~D~~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~ 230 (304)
T PF11583_consen 181 AEEI-IDAYQREIARDETIQPLVRQVMRIHVRDEARHIAFAREELRRVWPR 230 (304)
T ss_dssp HHHS-BHHHHHHHHT-SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776 55666432211 123445555555566999999999988775433
No 55
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=35.21 E-value=2.8e+02 Score=23.59 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCcc----ccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcc
Q 037898 68 DAFANDVVLQFAWQEVGHLKAIKKTVK--GFPRPL----LDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIP 141 (287)
Q Consensus 68 ~~~~~~~~~eia~~E~~HV~~L~~aLg--av~~P~----id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E 141 (287)
|+.++.++++....-..|++.|++.+. ++|-|. -|.... + .++ | +|...+.--+.+-
T Consensus 45 D~dik~~l~~~~~~~~~~i~~l~~ll~~e~ip~P~~~~~~~v~~~--------~-----~~l---f-sD~~~l~~~~~~~ 107 (166)
T PF11553_consen 45 DKDIKKLLKKGLDLSQKQIEQLEKLLKEEGIPVPPGFPESDVTDS--------A-----PPL---F-SDKFMLFYISFMS 107 (166)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------------GG--------G-----S-G------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCC--------C-----CCC---C-CcHHHHHHHHHHH
Confidence 789999999999999999999999997 666553 122110 0 012 3 3555555555566
Q ss_pred chhHHhhccccccCCChhHHHHHHhHHHh
Q 037898 142 YVGLTGYVGANPRLQDATSKRLVAGLLGV 170 (287)
Q Consensus 142 ~VGvtAY~Gaap~l~~~~~l~aAa~Il~V 170 (287)
-.|+..|..+......++++..--..+.-
T Consensus 108 ~~~~~~~~~al~~s~R~Dl~~~f~~~~~~ 136 (166)
T PF11553_consen 108 QAGITNYGRALSSSVRNDLRAFFMKFLME 136 (166)
T ss_dssp HHHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 78999998887777777766555544443
No 56
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=30.41 E-value=86 Score=27.78 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=47.3
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037898 16 QSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK 94 (287)
Q Consensus 16 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg 94 (287)
.+-.++|+-=|++||--.+=|..+..=. . ..-|...++++.+|-.+|..|+.+|+..|+
T Consensus 81 ~tv~E~L~~DL~~E~~a~~~lk~~i~~~--e------------------~~~Dyvsrdl~~~iL~deEEHid~LetqL~ 139 (157)
T COG2193 81 ETVKEMLEADLALEYEARDALKEAIAYC--E------------------EVQDYVSRDLLEEILADEEEHIDWLETQLD 139 (157)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH--H------------------hcccchHHHHHHHHHcchHHHHHHHHHHHH
Confidence 5567899999999999999998875210 0 112577899999999999999999999876
No 57
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=29.70 E-value=4.3e+02 Score=23.96 Aligned_cols=110 Identities=22% Similarity=0.257 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHH
Q 037898 69 AFANDVVLQFAWQEVGHLKAIKKTVK--GFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLT 146 (287)
Q Consensus 69 ~~~~~~~~eia~~E~~HV~~L~~aLg--av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvt 146 (287)
+...+-+..++..|..|.+-.-+-+. +++-. ..++....+-+.+..-. -.|.. -.+-|+.+.++|.=+--
T Consensus 48 ~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l~--~~~~~~Ya~~L~k~vR~-----~~p~~-llD~Llv~alIEARScE 119 (180)
T cd07910 48 PELVEAMSDLAREELQHFEQVLKIMKKRGIPLG--PDSKDPYASGLRKLVRK-----GEPER-LLDRLLVAALIEARSCE 119 (180)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--CCCCCHHHHHHHHHccc-----CChHH-HHHHHHHHHHHHHHhHH
Confidence 55667788899999999887776665 44321 22222333333333321 12222 12344555566655444
Q ss_pred hhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHhhh
Q 037898 147 GYVGANPRLQDATSKRLVAGLLGVESGQDAVIRALLYEKA 186 (287)
Q Consensus 147 AY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~ 186 (287)
=+.=.+|.+.+++..+-=.+++..||||-..-=.+-.+..
T Consensus 120 RF~lLa~~l~D~eL~~FY~~Ll~SEarHy~~yl~LA~~y~ 159 (180)
T cd07910 120 RFALLAPALPDPELKKFYRGLLESEARHYELFLDLARKYF 159 (180)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4445569999999999999999999999987766666544
No 58
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=28.76 E-value=1.9e+02 Score=26.61 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=41.4
Q ss_pred hhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCC-Ccc
Q 037898 22 LEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVKGFP-RPL 100 (287)
Q Consensus 22 LNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLgav~-~P~ 100 (287)
||-|+.||+-=---|+.+.+- +. -..+..++..+++|+-+|.-|....-+.|.++. +|.
T Consensus 1 Lq~Ai~lE~atip~YL~a~yS--i~------------------~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~ 60 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYS--IK------------------PGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPR 60 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH--BS-------------------TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred CcHHHHHHHHHHHHHHHHHcc--cC------------------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 678999999998999988752 21 112355999999999999999999887765322 255
Q ss_pred cc
Q 037898 101 LD 102 (287)
Q Consensus 101 id 102 (287)
++
T Consensus 61 l~ 62 (227)
T PF12902_consen 61 LT 62 (227)
T ss_dssp --
T ss_pred cc
Confidence 54
No 59
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.45 E-value=39 Score=33.86 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=50.4
Q ss_pred CCCCCCChHHHHHHHhhc-c---chhHHhhccccccCCC---hhHHHHHHhHHHhhhhhHHHHHHHHHhhh
Q 037898 123 PFDPYANSINYLIASYLI-P---YVGLTGYVGANPRLQD---ATSKRLVAGLLGVESGQDAVIRALLYEKA 186 (287)
Q Consensus 123 ~FdPy~n~~~FL~~A~~~-E---~VGvtAY~Gaap~l~~---~~~l~aAa~Il~VEA~Haa~IR~lL~~~~ 186 (287)
+-|||.++.-|+-+|..- . .++||| ...+|+..+ +..++-.+.++-.|-+|..-+|.+++-..
T Consensus 126 DiDPFGSPaPFlDaA~~s~~~~G~l~vTA-TD~a~L~G~~p~~c~rkY~a~~~~~~~~hE~glR~Lig~va 195 (380)
T COG1867 126 DIDPFGSPAPFLDAALRSVRRGGLLCVTA-TDTAPLCGSYPRKCRRKYGAVPLKTEFCHEVGLRILIGYVA 195 (380)
T ss_pred ecCCCCCCchHHHHHHHHhhcCCEEEEEe-cccccccCCChHHHHHHhccccCCCcchhHHHHHHHHHHHH
Confidence 368999999999887543 3 466766 456677776 66889999999999999999999998644
No 60
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=27.45 E-value=83 Score=28.91 Aligned_cols=56 Identities=29% Similarity=0.288 Sum_probs=34.6
Q ss_pred HHHHHHHH---HHhhhhCCCccccCCcccCCCCCC-CCCccCCC---CHHHHHHHHHHHHhHHHHHHH
Q 037898 28 LEYLEAEF---FLFGSLGYGLDKVAPNLTMGGPAP-IGGKKANL---DAFANDVVLQFAWQEVGHLKA 88 (287)
Q Consensus 28 LEyLEa~F---Y~~a~~G~gl~~~~~~l~~gGp~p-~g~~~a~l---~~~~~~~~~eia~~E~~HV~~ 88 (287)
.+|||.+= |++.+ .+.+.+-...-|+| +.-+.-++ +..+++++..|+.||..|+..
T Consensus 139 vgylEeeAv~tYt~~l-----~di~~g~l~~~paP~iAi~Yw~l~~~~atlrDvi~~IRaDEa~Hr~v 201 (207)
T PF01786_consen 139 VGYLEEEAVHTYTEFL-----EDIDEGKLPNMPAPEIAIDYWGLPELDATLRDVILAIRADEAEHRDV 201 (207)
T ss_pred HHHHHHHHHHHHHHHH-----HHcccCCCCCCCCCHHHHHHhCCCccCchHHHHHHHHHhhHHHHHHh
Confidence 47888775 55554 33333322233433 33333334 358999999999999999864
No 61
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=27.42 E-value=2.4e+02 Score=23.01 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=46.2
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 037898 16 QSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTV 93 (287)
Q Consensus 16 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aL 93 (287)
.+..++|.-++..|..-.+.|.....- + .. -|..+++++.+|-.+|..|+.-++..|
T Consensus 92 ~~~~~~l~~~~~~e~~~i~~~~~~~~~----------a----------~~-~D~~t~~ll~~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 92 PDVKGILKVNLKAERCAIKVYKELCDM----------T----------HG-KDPVTYDLALAILNEEIEHEEDLEELL 148 (148)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----------H----------cC-CChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456789999999999999999988621 0 01 378899999999999999999988653
No 62
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=27.37 E-value=3.5e+02 Score=22.21 Aligned_cols=106 Identities=18% Similarity=0.100 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhH
Q 037898 68 DAFANDVVLQFAWQEVGHLKAIKKTVK--GFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGL 145 (287)
Q Consensus 68 ~~~~~~~~~eia~~E~~HV~~L~~aLg--av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGv 145 (287)
++.|+++++.+..+...--.-|+.... ++.-|.-.++. .-...++.--+ .-++.|| ..||-.--.--.=-+
T Consensus 30 ~~~Vk~~A~~~~~dh~~~~~~l~~la~~~~v~lp~~~~~~-~~~~~l~~L~~-~~g~~FD-----~~yl~~~i~~h~~~l 102 (139)
T PF13628_consen 30 SPEVKAFAQQMVEDHTQANQQLAALAAKKGVTLPPTALSA-EQQAELDRLQK-LSGSAFD-----RAYLDAQIKAHEKAL 102 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccH-hhHHHHHHHHc-CchhHHH-----HHHHHHHHHHHHHHH
Confidence 688999999998777666666655544 45544212222 12222222211 1112454 345554433333446
Q ss_pred Hhhcc-ccccCCChhHHHHHHhHHHhhhhhHHHHHH
Q 037898 146 TGYVG-ANPRLQDATSKRLVAGLLGVESGQDAVIRA 180 (287)
Q Consensus 146 tAY~G-aap~l~~~~~l~aAa~Il~VEA~Haa~IR~ 180 (287)
..|.. .++.-+|+.+++.|...+.+--.|-...|.
T Consensus 103 ~~~~~~~~~~~~~~~lk~~a~~~lp~l~~hl~~a~~ 138 (139)
T PF13628_consen 103 ALFEKQLAASGKDPELKAFAQETLPVLEAHLEMARA 138 (139)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHhHHHHHHHHHHhh
Confidence 77788 788889999999999888888888766654
No 63
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=25.66 E-value=98 Score=26.10 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=46.5
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037898 17 SDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK 94 (287)
Q Consensus 17 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg 94 (287)
+-.++|..+|..|---.+.|.....= + ..--|..+.++++.|..+|..|+.+|++.|+
T Consensus 82 ~~~e~l~~~l~~E~~~~~~~~e~i~~----------A----------~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 82 TVREMLEADLALELDVLNRLKEAIAY----------A----------EEVRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH----------H----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999999999887520 0 0112688999999999999999999999886
No 64
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=25.07 E-value=6.3e+02 Score=24.41 Aligned_cols=115 Identities=20% Similarity=0.196 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhc-----CCC-----CccccCCcc----hHHHHHHHhcCCCCCCCCC----CCC--
Q 037898 69 AFANDVVLQFAWQEVGHLKAIKKTVK-----GFP-----RPLLDLSAG----TFAKVMDKAFGKPLNPPFD----PYA-- 128 (287)
Q Consensus 69 ~~~~~~~~eia~~E~~HV~~L~~aLg-----av~-----~P~id~s~~----~F~~~~~~A~g~~l~p~Fd----Py~-- 128 (287)
...++++..|+-.|.+|++.+-+.+. +.. .|.+.-.-+ .+..+ .+... +|+| |++
T Consensus 52 ~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~e~~~~~~l~~s~~~~~n~~h~~~----~~~g~-~p~dS~G~pWta~ 126 (277)
T COG3546 52 AKYKDLLMDIGTEELSHLEMVATMINLLNKGATGEGAEEAELYGSGLGGMNPHHISV----LLYGA-GPADSAGVPWTAA 126 (277)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhHHhhccCCCchhhhh----hccCC-CCcccCCCccchh
Confidence 55899999999999999999998875 222 233221110 11111 11110 1122 111
Q ss_pred ------ChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHhhhhc
Q 037898 129 ------NSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVIRALLYEKANE 188 (287)
Q Consensus 129 ------n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~~ 188 (287)
|.+.=|..=...|--+-.-|.=..-+..||.++....=++.=|..|.-..+..|..-...
T Consensus 127 YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~mtdDpgvrd~L~fLl~Re~~H~~~f~kAL~~l~~~ 192 (277)
T COG3546 127 YIVASGNLIADLRSNIAAEARARLQYERLYEMTDDPGVRDTLSFLLTREIAHQNAFRKALESLENE 192 (277)
T ss_pred hhhccCccHHHHHHHHHHHhccceeeeeeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111122333344555666677777788899999999999999999999998888876554
No 65
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=22.19 E-value=1.5e+02 Score=25.47 Aligned_cols=112 Identities=12% Similarity=0.106 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCccccCCc-chHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchh
Q 037898 68 DAFANDVVLQFAWQEVGHLKAIKKTVK--GFPRPLLDLSA-GTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVG 144 (287)
Q Consensus 68 ~~~~~~~~~eia~~E~~HV~~L~~aLg--av~~P~id~s~-~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VG 144 (287)
+|..++.+++=..+...|+.-|++.+. +.......|.. ..+-+-+++..+.. .=||-.-+...+.+++.+|...
T Consensus 33 ~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~~~~~~---~~d~~~~D~~li~a~q~~ehye 109 (159)
T PF05974_consen 33 SPELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVAEAQELIEEF---AEDPAVKDAALIAAAQKVEHYE 109 (159)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHHHHHHHHHT----S-SHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHHHHHHHHhcc---cCCchHhhHHHHHHHHHHHHHH
Confidence 488999999999999999999999876 22111122110 12222222222210 1233344556677899999999
Q ss_pred HHhhcccc---ccCCChhHHHHHHhHHHhhhhhHHHHHHHH
Q 037898 145 LTGYVGAN---PRLQDATSKRLVAGLLGVESGQDAVIRALL 182 (287)
Q Consensus 145 vtAY~Gaa---p~l~~~~~l~aAa~Il~VEA~Haa~IR~lL 182 (287)
..+|.... ..+..++...+.-..|.=|-..+.+++.+.
T Consensus 110 IA~Y~tL~~~A~~lG~~e~a~lL~~~L~EE~~~~~~L~~~a 150 (159)
T PF05974_consen 110 IAAYGTLIALAKQLGDEEAAQLLEQNLDEEEAADEKLTQLA 150 (159)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997543 345555555555566666666666555544
No 66
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=21.49 E-value=3e+02 Score=23.14 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=61.9
Q ss_pred cchhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHhhhhcccCCCcccHHHHHHHHHHHHHhhCCCCCCCCc
Q 037898 141 PYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVIRALLYEKANETVKPYGVTVAEFTNKMSQLRNVLGRTGIKDEG 220 (287)
Q Consensus 141 E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~IS~lR~~L~~~g~~DeG 220 (287)
..=|.-+|.=++-.+.++.++...-.+..--..|..-++..+-..+.+... .+-..+.+....-++|..++ +.+|+.
T Consensus 12 ~~D~~~gY~~aae~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~-~gs~~g~lhr~w~~lks~~~--~~~d~a 88 (139)
T TIGR02284 12 SIDGKDGFEESAEEVKDPELATLFRRIAGEKSAIVSELQQVVASLGGKPED-HGSMVGSLHQFWGKIRATLT--PNDDYV 88 (139)
T ss_pred cccHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CCcHHHHHHHHHHHHHHHHc--CCChHH
Confidence 345788999999999999999999999999999999999988887754221 23445677888899999998 456666
Q ss_pred cc
Q 037898 221 LV 222 (287)
Q Consensus 221 i~ 222 (287)
+.
T Consensus 89 iL 90 (139)
T TIGR02284 89 VL 90 (139)
T ss_pred HH
Confidence 54
No 67
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=21.29 E-value=1.1e+02 Score=29.56 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhc----CCCCccc---cCCcchHHHHHH------H-hcCCCCC------CCCC-----
Q 037898 71 ANDVVLQFAWQEVGHLKAIKKTVK----GFPRPLL---DLSAGTFAKVMD------K-AFGKPLN------PPFD----- 125 (287)
Q Consensus 71 ~~~~~~eia~~E~~HV~~L~~aLg----av~~P~i---d~s~~~F~~~~~------~-A~g~~l~------p~Fd----- 125 (287)
.++++..|+..|.+||+.|...|. +.+.... ..+...+..+++ . ..|.... -||+
T Consensus 55 ~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~ 134 (283)
T PF05067_consen 55 YKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAAPGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQ 134 (283)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHHGGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhcccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhh
Confidence 479999999999999999998874 3332211 110000000000 0 0011000 1222
Q ss_pred CCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHhhhhc
Q 037898 126 PYANSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVIRALLYEKANE 188 (287)
Q Consensus 126 Py~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~~ 188 (287)
--.|...=|..=...|--+-.-|.=...+.+|+.+++...=++.=|-.|.-.....|.+....
T Consensus 135 ~sGdl~aDL~~NiaAE~~AR~~yerL~~mTdDpgvkd~L~FLl~Re~vH~~~f~~ALe~l~~~ 197 (283)
T PF05067_consen 135 ASGDLIADLRSNIAAEQRARLQYERLYEMTDDPGVKDMLSFLLAREIVHQQQFGKALEELQEN 197 (283)
T ss_dssp --S-HHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122444556666677888889999999999999999999999999999998888777765443
No 68
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=20.62 E-value=1.4e+02 Score=26.49 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=43.9
Q ss_pred cchhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHhhhhcccCCC
Q 037898 141 PYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVIRALLYEKANETVKPY 193 (287)
Q Consensus 141 E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~~~~v~Py 193 (287)
|.-.+.-|.|++-.+.++..+...--+..-|-.|-.+....+.+++ ++|.
T Consensus 12 E~gA~~IY~gQ~~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~---~rps 61 (165)
T cd01042 12 EVGAVRIYRGQLAVARDPAVRPLIKEMLDEEKDHLAWFEELLPELG---VRPS 61 (165)
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCCc
Confidence 4455778999999999999999999999999999999999999886 4554
No 69
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=20.41 E-value=5.4e+02 Score=21.86 Aligned_cols=97 Identities=19% Similarity=0.156 Sum_probs=58.9
Q ss_pred hhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC
Q 037898 19 IDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK-GFP 97 (287)
Q Consensus 19 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg-av~ 97 (287)
.+.||=.+|.|+--+..|..-+.=..-+ ..++ +-....++.-+..|..|..-|-+-|- --.
T Consensus 5 ~~~Ln~qi~~El~as~~Yl~ma~~~~~~-----------------~~~l-~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg 66 (160)
T cd00904 5 EAAVNRQLNLELYASYTYLSMATYFDRD-----------------DVAL-KGVAHFFKEQAQEEREHAEKFYKYQNERGG 66 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc-----------------cccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4679999999999999987654211000 1123 33667888999999999988877663 111
Q ss_pred Cccc-cCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhc
Q 037898 98 RPLL-DLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYV 149 (287)
Q Consensus 98 ~P~i-d~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~ 149 (287)
+|.+ ++. .|+-+-|.+....+..+.-.|..-...+.
T Consensus 67 ~~~l~~i~----------------~~~~~~~~~~~e~~e~al~~Ek~v~~~i~ 103 (160)
T cd00904 67 RVELQDIE----------------KPPSDEWGGTLDAMEAALKLEKFVNQALL 103 (160)
T ss_pred ccccCcCC----------------CCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 2221 111 01222245777777778777766554443
No 70
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=20.23 E-value=7.9e+02 Score=23.75 Aligned_cols=106 Identities=16% Similarity=0.102 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhc--CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCC-ChHHHHHHHhhccchhHHh
Q 037898 71 ANDVVLQFAWQEVGHLKAIKKTVK--GFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYA-NSINYLIASYLIPYVGLTG 147 (287)
Q Consensus 71 ~~~~~~eia~~E~~HV~~L~~aLg--av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~-n~~~FL~~A~~~E~VGvtA 147 (287)
....+..-...|..|-.+|++-|- +...|. .+.......++.. |+|-. ++.--..+...|-..+...
T Consensus 95 w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~------~le~~~~~~~~~G----~~~~~~~~~~~~~~y~~fqE~aT~v 164 (297)
T cd01050 95 WARWVRRWTAEENRHGDLLNKYLYLTGRVDPR------ALERTRQYLIGSG----FDPGTDNSPYRGFVYTSFQELATRI 164 (297)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhCC----CCCCCcccHHHHHHHHHHHHHHHHH
Confidence 445567888899999999999875 222222 2222222333433 44422 2221122223366666777
Q ss_pred hccccc-cC--CChhHHHHHHhHHHhhhhhHHHHHHHHHhhh
Q 037898 148 YVGANP-RL--QDATSKRLVAGLLGVESGQDAVIRALLYEKA 186 (287)
Q Consensus 148 Y~Gaap-~l--~~~~~l~aAa~Il~VEA~Haa~IR~lL~~~~ 186 (287)
|.+... .. .+|.+.++..-|.+-|+||-..-+.++..--
T Consensus 165 ~y~nl~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~l 206 (297)
T cd01050 165 SHRNTARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEALF 206 (297)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766443 34 5777889999999999999999988876543
Done!