Query 037899
Match_columns 113
No_of_seqs 141 out of 219
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 08:43:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1as5_A Conotoxin Y-PIIIE; neur 25.0 71 0.0024 16.8 2.7 24 76-111 2-25 (26)
2 3arc_L Photosystem II reaction 20.8 99 0.0034 17.6 2.9 17 7-23 16-32 (37)
3 3s8f_B Cytochrome C oxidase su 16.9 2.4E+02 0.0082 20.2 5.0 7 7-13 18-24 (168)
4 1cz6_A Protein (androctonin); 16.4 46 0.0016 17.5 0.7 14 77-90 9-22 (26)
5 3ucp_A UNDA; beta-barrel, C-ty 12.8 43 0.0015 27.2 0.0 12 1-13 1-12 (874)
6 4gb7_A 6-aminohexanoate-dimer 8.7 74 0.0025 25.1 0.0 16 1-16 4-19 (422)
7 2f93_B Sensory rhodopsin II tr 7.9 2.7E+02 0.0092 19.4 2.7 15 45-59 100-114 (122)
8 1e9t_A HITF, intestinal trefoi 7.8 3E+02 0.01 16.5 2.6 6 74-79 17-22 (59)
9 1xrd_A LH-1, light-harvesting 6.9 4.4E+02 0.015 15.9 3.0 19 7-25 17-35 (52)
10 1lgh_A LH II, B800/850, light 6.5 4.6E+02 0.016 15.9 3.0 20 7-26 22-41 (56)
No 1
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=25.02 E-value=71 Score=16.80 Aligned_cols=24 Identities=42% Similarity=1.051 Sum_probs=15.3
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCCCCcccccccCC
Q 037899 76 VPCNRRGTSYYNCNHGGGPVNPYRRGCSAITNCERV 111 (113)
Q Consensus 76 ~pC~~~g~sy~nC~~~~~~aNpYtRGCs~i~rCrr~ 111 (113)
+||- -|+.|.+ | .||+..--|++.
T Consensus 2 ppcc----lyg~cr~-------~-pgc~~a~cc~~~ 25 (26)
T 1as5_A 2 PPCC----LYGKCRR-------Y-PGCSSASCCQRX 25 (26)
T ss_dssp CCSS----STTCCCC-------C-TTCTTCCCSCC-
T ss_pred CCce----ecccccc-------C-CCcchhhhhccc
Confidence 4664 2556666 4 588888778764
No 2
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=20.81 E-value=99 Score=17.64 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 037899 7 SLLFLTTAVVVVAMAAE 23 (113)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (113)
+++|-++.|+++++..+
T Consensus 16 SLy~GLLlifvlavlFs 32 (37)
T 3arc_L 16 SLYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 45555555556655543
No 3
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=16.85 E-value=2.4e+02 Score=20.20 Aligned_cols=7 Identities=29% Similarity=0.178 Sum_probs=4.1
Q ss_pred HHHHHHH
Q 037899 7 SLLFLTT 13 (113)
Q Consensus 7 ~~~~~~~ 13 (113)
|++|.++
T Consensus 18 w~~~~~~ 24 (168)
T 3s8f_B 18 WLAFSLA 24 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666553
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=16.36 E-value=46 Score=17.49 Aligned_cols=14 Identities=50% Similarity=1.279 Sum_probs=10.5
Q ss_pred CCCCCCCCCcCCCC
Q 037899 77 PCNRRGTSYYNCNH 90 (113)
Q Consensus 77 pC~~~g~sy~nC~~ 90 (113)
.|.++|--||.|..
T Consensus 9 icrrrggcyykctn 22 (26)
T 1cz6_A 9 ICRRRGGCYYKCTN 22 (26)
T ss_dssp ECCSSSCCEEEECC
T ss_pred HHHhcCceEEEccC
Confidence 47777777888877
No 5
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H cell surface, transport protein; HET: HEC; 1.76A {Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Probab=12.76 E-value=43 Score=27.20 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHH
Q 037899 1 MGSKLMSLLFLTT 13 (113)
Q Consensus 1 m~~k~~~~~~~~~ 13 (113)
|.-|. |.+||..
T Consensus 1 ~~~~~-~~~~~~a 12 (874)
T 3ucp_A 1 MSKKL-LSVLFGA 12 (874)
T ss_dssp -------------
T ss_pred CchhH-HHHHHHH
Confidence 44455 4444443
No 6
>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595, national institute of allergy and infectious diseases; HET: MSE; 1.60A {Bacillus anthracis}
Probab=8.67 E-value=74 Score=25.05 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHH
Q 037899 1 MGSKLMSLLFLTTAVV 16 (113)
Q Consensus 1 m~~k~~~~~~~~~~~~ 16 (113)
|.+|...+++++++++
T Consensus 4 m~~k~~~~l~~~~~~~ 19 (422)
T 4gb7_A 4 MKLKKSPLLLLIITFI 19 (422)
T ss_dssp ----------------
T ss_pred hhHHHHHHHHHHHHHH
Confidence 7788755555555433
No 7
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=7.90 E-value=2.7e+02 Score=19.37 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=0.0
Q ss_pred ccccccCCCcccccc
Q 037899 45 DENEMLMPTEESRRQ 59 (113)
Q Consensus 45 ~eeE~~m~se~~RR~ 59 (113)
++.|++.|-|+.||-
T Consensus 100 a~GdLDVdiet~RR~ 114 (122)
T 2f93_B 100 GDGDLDVELETRREN 114 (122)
T ss_dssp ---------------
T ss_pred HcCCCCCcccccccc
Confidence 345577777788874
No 8
>1e9t_A HITF, intestinal trefoil factor; solution structure, trefoil domain, spectroscopy, cell motility factor; NMR {Homo sapiens} SCOP: g.16.1.1 PDB: 1pe3_1
Probab=7.80 E-value=3e+02 Score=16.45 Aligned_cols=6 Identities=33% Similarity=0.922 Sum_probs=2.6
Q ss_pred CCCCCC
Q 037899 74 NSVPCN 79 (113)
Q Consensus 74 ~~~pC~ 79 (113)
+++.|.
T Consensus 17 ~R~dCG 22 (59)
T 1e9t_A 17 DRVDCG 22 (59)
T ss_dssp TCCCCC
T ss_pred hcccCC
Confidence 344453
No 9
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=6.88 E-value=4.4e+02 Score=15.85 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 037899 7 SLLFLTTAVVVVAMAAESR 25 (113)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (113)
..+||++..++++++.-++
T Consensus 17 ~~~fl~vlAl~IHfilLSt 35 (52)
T 1xrd_A 17 LATFLFVLALLIHFILLST 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc
No 10
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=6.55 E-value=4.6e+02 Score=15.92 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 037899 7 SLLFLTTAVVVVAMAAESRA 26 (113)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (113)
.+.|+.+..++|+++.-+.+
T Consensus 22 l~~~v~vlAllIH~~lLs~~ 41 (56)
T 1lgh_A 22 IWIVATVVAIAVHAAVLAAP 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHHHHcCC
Done!