Query 037899
Match_columns 113
No_of_seqs 141 out of 219
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 08:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037899.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037899hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omca_ g.3.6.1 (A:) Conotoxin 66.2 0.63 4.6E-05 23.7 0.2 20 77-102 7-26 (27)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 21.0 46 0.0034 17.6 2.9 17 7-23 16-32 (37)
3 d1e9ta_ g.16.1.1 (A:) Intestin 13.5 67 0.0049 18.1 2.6 17 74-90 17-33 (59)
4 d1rzhh2 f.23.10.1 (H:11-35) Ph 13.5 61 0.0045 15.8 2.1 12 6-17 7-18 (26)
5 d1hvwa_ g.3.6.2 (A:) Atracotox 10.6 54 0.0039 15.9 1.2 9 94-102 6-14 (26)
6 d1ce3a_ g.69.1.1 (A:) Multidom 8.3 1.8E+02 0.013 16.3 3.1 28 73-103 3-30 (54)
7 d2v5za2 d.16.1.5 (A:290-401) M 8.2 54 0.004 18.7 0.8 10 95-104 101-110 (112)
8 d1ozbi_ g.74.1.1 (I:) Preprote 8.1 1.3E+02 0.0097 14.6 2.2 13 77-90 8-20 (26)
9 d2dw4a3 d.16.1.5 (A:655-763) L 7.8 63 0.0046 18.1 1.0 8 95-102 99-106 (109)
10 d1eysh2 f.23.10.1 (H:7-43) Pho 7.5 1.4E+02 0.01 15.6 2.2 13 6-18 10-22 (37)
No 1
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=66.17 E-value=0.63 Score=23.72 Aligned_cols=20 Identities=40% Similarity=1.070 Sum_probs=13.7
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCCCCC
Q 037899 77 PCNRRGTSYYNCNHGGGPVNPYRRGC 102 (113)
Q Consensus 77 pC~~~g~sy~nC~~~~~~aNpYtRGC 102 (113)
.|++. -|||.. ..|||+..|
T Consensus 7 scspt---synccr---scnpytkrc 26 (27)
T d1omca_ 7 SCSPT---SYNCCR---SCNPYTKRC 26 (27)
T ss_dssp BCCTT---TTCBSS---CEETTTTEE
T ss_pred cCCCc---ccchhc---ccCcccccc
Confidence 46654 357777 689998655
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.98 E-value=46 Score=17.60 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 037899 7 SLLFLTTAVVVVAMAAE 23 (113)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (113)
+++|-++.|+++++..+
T Consensus 16 sLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 16 SLYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45555555556555543
No 3
>d1e9ta_ g.16.1.1 (A:) Intestinal trefoil factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.55 E-value=67 Score=18.14 Aligned_cols=17 Identities=24% Similarity=0.514 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCCcCCCC
Q 037899 74 NSVPCNRRGTSYYNCNH 90 (113)
Q Consensus 74 ~~~pC~~~g~sy~nC~~ 90 (113)
+++.|...|.+...|..
T Consensus 17 ~R~dCg~~git~~~C~~ 33 (59)
T d1e9ta_ 17 DRVDCGYPHVTPKECNN 33 (59)
T ss_dssp TCCCCCCSSCCTTTTTT
T ss_pred ccccCCCCCCCHHHHhh
Confidence 34556655544444444
No 4
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.54 E-value=61 Score=15.82 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 037899 6 MSLLFLTTAVVV 17 (113)
Q Consensus 6 ~~~~~~~~~~~~ 17 (113)
.|++|.+.+.|+
T Consensus 7 iw~fw~ffalli 18 (26)
T d1rzhh2 7 IYSFWIFLAGLI 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 355555555443
No 5
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=10.65 E-value=54 Score=15.90 Aligned_cols=9 Identities=33% Similarity=0.896 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q 037899 94 PVNPYRRGC 102 (113)
Q Consensus 94 ~aNpYtRGC 102 (113)
+.-||+..|
T Consensus 6 qpcpynenc 14 (26)
T d1hvwa_ 6 QPCPYNENC 14 (26)
T ss_dssp SBCSSTTSB
T ss_pred CcCCCCccc
Confidence 334555433
No 6
>d1ce3a_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=8.26 E-value=1.8e+02 Score=16.34 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCCCCCCc
Q 037899 73 ANSVPCNRRGTSYYNCNHGGGPVNPYRRGCS 103 (113)
Q Consensus 73 ~~~~pC~~~g~sy~nC~~~~~~aNpYtRGCs 103 (113)
+...-|+++- .|.-|+. ....++.+.|+
T Consensus 3 aC~~~CDprI-ay~iCPr--Se~k~~~~iCt 30 (54)
T d1ce3a_ 3 ACTLNCDPRI-AYGVCPR--SEEKKNDRICT 30 (54)
T ss_dssp CCCSSCCTTC-CEEECSS--CCCCSCCCCSC
T ss_pred cCccccCCce-eeeECCC--ccccccCCccc
Confidence 3334577665 3777766 33345566664
No 7
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.25 E-value=54 Score=18.71 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=7.9
Q ss_pred CCCCCCCCcc
Q 037899 95 VNPYRRGCSA 104 (113)
Q Consensus 95 aNpYtRGCs~ 104 (113)
.+||+||+-.
T Consensus 101 ~dp~~~GsYs 110 (112)
T d2v5za2 101 EEQYSGGCYT 110 (112)
T ss_dssp GCTTTCSSSC
T ss_pred CCCccCcccc
Confidence 5899999854
No 8
>d1ozbi_ g.74.1.1 (I:) Preprotein translocase SecA C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=8.11 E-value=1.3e+02 Score=14.56 Aligned_cols=13 Identities=38% Similarity=1.134 Sum_probs=8.7
Q ss_pred CCCCCCCCCcCCCC
Q 037899 77 PCNRRGTSYYNCNH 90 (113)
Q Consensus 77 pC~~~g~sy~nC~~ 90 (113)
||. .|+-|..|..
T Consensus 8 pCg-SgkkyK~C~G 20 (26)
T d1ozbi_ 8 PCG-SGKKYKHCHG 20 (26)
T ss_dssp TTT-CSSBGGGTTT
T ss_pred CCC-CCccHHHcCC
Confidence 665 5666777776
No 9
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.80 E-value=63 Score=18.11 Aligned_cols=8 Identities=38% Similarity=1.032 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 037899 95 VNPYRRGC 102 (113)
Q Consensus 95 aNpYtRGC 102 (113)
.+||+||+
T Consensus 99 ~dp~~~Gs 106 (109)
T d2dw4a3 99 ADPWARGS 106 (109)
T ss_dssp TCTTTSSS
T ss_pred CCCccCEe
No 10
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=7.51 E-value=1.4e+02 Score=15.63 Aligned_cols=13 Identities=8% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 037899 6 MSLLFLTTAVVVV 18 (113)
Q Consensus 6 ~~~~~~~~~~~~~ 18 (113)
.|++|++.+.|++
T Consensus 10 ly~Fw~FFagLi~ 22 (37)
T d1eysh2 10 IWAFWLFFFGLII 22 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Done!