Query 037901
Match_columns 119
No_of_seqs 48 out of 50
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 08:45:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bby_A RAP30; average structur 19.2 35 0.0012 22.4 0.8 22 39-60 33-57 (69)
2 3n40_P P62 envelope glycoprote 12.4 72 0.0025 27.4 1.2 29 39-68 39-68 (401)
3 2dhy_A CUE domain-containing p 11.4 1.2E+02 0.0042 19.4 1.9 16 98-114 17-32 (67)
4 3arc_T Photosystem II reaction 10.6 84 0.0029 18.3 0.8 6 5-10 26-31 (32)
5 3gjo_E Dystonin; EB1 structura 10.3 90 0.0031 17.8 0.8 8 5-12 9-16 (30)
6 3vhx_B Kinesin-like protein KI 6.7 1.6E+02 0.0054 21.4 1.0 17 54-70 14-30 (120)
7 1cq4_A Protein (serine protein 6.5 1.3E+02 0.0045 17.8 0.4 8 12-19 2-9 (47)
8 2ko4_B General control protein 6.4 3.4E+02 0.011 15.9 2.1 15 104-118 17-31 (34)
9 1p3q_Q VPS9P, vacuolar protein 6.0 1.3E+02 0.0044 18.9 0.2 11 104-114 16-26 (54)
10 1p4q_A CBP/P300-interacting tr 6.0 3.2E+02 0.011 17.3 2.0 16 95-110 9-24 (52)
No 1
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=19.22 E-value=35 Score=22.37 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=16.8
Q ss_pred CCC-chHHHhhCchh--hcccCCCC
Q 037901 39 HNP-SWVDEFLDFSS--ARRGTHRR 60 (119)
Q Consensus 39 ~~p-sWlDe~L~~~~--~rrg~HRR 60 (119)
.|| .||.|.|+.-+ .++|.|+-
T Consensus 33 ~QP~~yLKeiL~~Ia~~~k~g~~~~ 57 (69)
T 1bby_A 33 KQPVVYLKEILKEIGVQNVKGIHKN 57 (69)
T ss_dssp CSCHHHHHHHHHHHCCCBCCTTCCC
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCCC
Confidence 566 89999999865 47888863
No 2
>3n40_P P62 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 3n44_B* 3n41_B* 3n42_B* 3n43_B* 2xfb_B 3n44_A* 3n41_A* 3n42_A* 3n43_A*
Probab=12.36 E-value=72 Score=27.41 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=19.9
Q ss_pred CCCchHHHhhCchhh-cccCCCCCCCcceee
Q 037901 39 HNPSWVDEFLDFSSA-RRGTHRRSVSDSITY 68 (119)
Q Consensus 39 ~~psWlDe~L~~~~~-rrg~HRRS~SDSvaf 68 (119)
.+|.+ ||||+-... +.+.||||+.|.+.-
T Consensus 39 d~PgY-d~LL~a~l~C~~rr~kRs~~~~F~~ 68 (401)
T 3n40_P 39 MRPGY-YQLLQASLTCSPHRQRESTKDNFNV 68 (401)
T ss_dssp TSTTH-HHHHHHHTCCCCSSCSSCCTTCCCG
T ss_pred CCccH-HHHHHHHccCCCcCcccchhhhhhh
Confidence 45554 778876533 455689999998754
No 3
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=11.42 E-value=1.2e+02 Score=19.41 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=10.9
Q ss_pred CCCccchhhhhcccccC
Q 037901 98 EFDKFDDEQFMSMFTDD 114 (119)
Q Consensus 98 eFDr~dDeQ~mSMFsD~ 114 (119)
+|.. .-+||..||++-
T Consensus 17 ~~~~-~v~~L~~MFP~l 32 (67)
T 2dhy_A 17 EFNQ-AMDDFKTMFPNM 32 (67)
T ss_dssp CSHH-HHHHHHHHCSSS
T ss_pred CHHH-HHHHHHHHCCCC
Confidence 4443 456889999875
No 4
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=10.56 E-value=84 Score=18.26 Aligned_cols=6 Identities=50% Similarity=1.265 Sum_probs=4.5
Q ss_pred CCCCCC
Q 037901 5 PPKIPN 10 (119)
Q Consensus 5 PPKIP~ 10 (119)
||||+.
T Consensus 26 PPri~~ 31 (32)
T 3arc_T 26 PPRITK 31 (32)
T ss_dssp CCCCC-
T ss_pred CCCCCC
Confidence 899985
No 5
>3gjo_E Dystonin; EB1 structural motif,+TIP protein complex, SXIP motiff, APC/ binding protein, microtubule actin cross-linking factor, CE cell division; 2.50A {Homo sapiens}
Probab=10.34 E-value=90 Score=17.78 Aligned_cols=8 Identities=50% Similarity=0.870 Sum_probs=6.4
Q ss_pred CCCCCCCC
Q 037901 5 PPKIPNMT 12 (119)
Q Consensus 5 PPKIP~~~ 12 (119)
|-|||++.
T Consensus 9 pSkIPTpq 16 (30)
T 3gjo_E 9 PSKIPTPQ 16 (30)
T ss_pred CccCCCcc
Confidence 77999974
No 6
>3vhx_B Kinesin-like protein KIF23; small GTPase, GTP binding, flemming BODY, cytokinesis, cell signaling protein complex; HET: GTP; 2.81A {Homo sapiens}
Probab=6.73 E-value=1.6e+02 Score=21.44 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=12.8
Q ss_pred cccCCCCCCCcceeecc
Q 037901 54 RRGTHRRSVSDSITYLE 70 (119)
Q Consensus 54 rrg~HRRS~SDSvafld 70 (119)
-+..||||.|=+=-+||
T Consensus 14 ~~~~hRRS~Sag~rWld 30 (120)
T 3vhx_B 14 IRLRHRRSRSAGDRWVD 30 (120)
T ss_dssp SSCCSCCCCSSSCCEEE
T ss_pred cCcceecccCCCCccee
Confidence 46789999887656666
No 7
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=6.48 E-value=1.3e+02 Score=17.76 Aligned_cols=8 Identities=25% Similarity=1.115 Sum_probs=5.2
Q ss_pred CCCCCccc
Q 037901 12 TPAWPDFF 19 (119)
Q Consensus 12 ~~~wp~f~ 19 (119)
.++|||+-
T Consensus 2 K~sWPELV 9 (47)
T 1cq4_A 2 KTEWPELV 9 (47)
T ss_dssp CCBCGGGT
T ss_pred CcCChhhc
Confidence 46788754
No 8
>2ko4_B General control protein GCN4; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_B
Probab=6.41 E-value=3.4e+02 Score=15.92 Aligned_cols=15 Identities=27% Similarity=0.758 Sum_probs=10.9
Q ss_pred hhhhhcccccCCCCC
Q 037901 104 DEQFMSMFTDDLPNA 118 (119)
Q Consensus 104 DeQ~mSMFsD~~~~~ 118 (119)
-+...|+|-||+...
T Consensus 17 ~~~WtSLFDdDIpVt 31 (34)
T 2ko4_B 17 SKEWTSLFDNDIPVT 31 (34)
T ss_dssp SGGGTTTTSCCCSCS
T ss_pred cchhhhhccCCccee
Confidence 356788998888654
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=6.02 E-value=1.3e+02 Score=18.87 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=8.5
Q ss_pred hhhhhcccccC
Q 037901 104 DEQFMSMFTDD 114 (119)
Q Consensus 104 DeQ~mSMFsD~ 114 (119)
=++|.+||++-
T Consensus 16 ~~~L~~MFP~l 26 (54)
T 1p3q_Q 16 LNTLQNMFPDM 26 (54)
T ss_dssp HHHHHHHSTTS
T ss_pred HHHHHHHcccC
Confidence 36789999874
No 10
>1p4q_A CBP/P300-interacting transactivator 2; helix, protein-protein complex, transcription/transferase complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=5.98 E-value=3.2e+02 Score=17.32 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=13.4
Q ss_pred CCCCCCccchhhhhcc
Q 037901 95 NHHEFDKFDDEQFMSM 110 (119)
Q Consensus 95 g~~eFDr~dDeQ~mSM 110 (119)
+--++|-.|+|-|||+
T Consensus 9 ~~~D~dliDEevLtsL 24 (52)
T 1p4q_A 9 NVIDTDFIDEEVLMSL 24 (52)
T ss_dssp CCCSCSSSCTTHHHHH
T ss_pred CccccccccHHHHHHH
Confidence 4468999999999986
Done!