Query 037904
Match_columns 189
No_of_seqs 121 out of 2682
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:34:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617 Ras suppressor protein 99.6 5.3E-17 1.1E-21 114.6 -2.1 142 29-172 31-184 (264)
2 PLN00113 leucine-rich repeat r 99.5 4.1E-14 8.8E-19 126.4 9.2 142 31-172 140-295 (968)
3 PLN00113 leucine-rich repeat r 99.5 5.2E-14 1.1E-18 125.7 9.9 150 22-171 155-318 (968)
4 PLN03210 Resistant to P. syrin 99.5 3.9E-13 8.5E-18 121.8 10.7 148 28-176 631-840 (1153)
5 KOG0444 Cytoskeletal regulator 99.4 9.1E-15 2E-19 120.9 -1.3 153 22-176 213-377 (1255)
6 KOG0617 Ras suppressor protein 99.4 2.9E-15 6.2E-20 105.9 -3.9 138 24-163 49-195 (264)
7 PLN03210 Resistant to P. syrin 99.4 6.8E-13 1.5E-17 120.2 10.0 123 53-176 778-908 (1153)
8 KOG0444 Cytoskeletal regulator 99.3 3.1E-13 6.7E-18 112.0 -1.4 135 46-184 214-360 (1255)
9 KOG0532 Leucine-rich repeat (L 99.2 4.4E-13 9.4E-18 109.6 -2.1 148 21-171 111-270 (722)
10 KOG0472 Leucine-rich repeat pr 99.2 2.2E-12 4.7E-17 101.9 -1.6 139 33-172 390-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.1 1.1E-12 2.3E-17 103.6 -5.3 142 27-170 64-215 (565)
12 KOG0532 Leucine-rich repeat (L 99.1 5.4E-12 1.2E-16 103.3 -3.0 140 29-172 96-245 (722)
13 KOG4194 Membrane glycoprotein 99.0 2.9E-11 6.4E-16 99.5 -0.9 144 28-172 266-427 (873)
14 PRK15370 E3 ubiquitin-protein 99.0 1.5E-09 3.1E-14 94.2 8.9 39 78-119 263-301 (754)
15 PRK15370 E3 ubiquitin-protein 99.0 7.3E-10 1.6E-14 96.1 7.0 131 32-172 242-378 (754)
16 KOG4194 Membrane glycoprotein 98.9 5.7E-10 1.2E-14 92.1 3.4 139 31-171 173-327 (873)
17 KOG0618 Serine/threonine phosp 98.9 1.9E-10 4E-15 98.9 -0.9 147 24-172 303-487 (1081)
18 PF14580 LRR_9: Leucine-rich r 98.9 2.3E-09 4.9E-14 77.3 4.1 84 30-116 18-103 (175)
19 PRK15387 E3 ubiquitin-protein 98.8 1.4E-08 3E-13 88.1 8.7 37 32-71 223-259 (788)
20 PRK15387 E3 ubiquitin-protein 98.8 2.4E-08 5.2E-13 86.7 8.7 78 30-118 241-319 (788)
21 KOG0618 Serine/threonine phosp 98.8 1E-09 2.3E-14 94.4 -0.5 75 98-172 380-463 (1081)
22 COG4886 Leucine-rich repeat (L 98.8 6E-09 1.3E-13 84.6 3.6 140 30-171 115-287 (394)
23 PF14580 LRR_9: Leucine-rich r 98.7 2.2E-08 4.7E-13 72.3 5.0 88 29-118 40-130 (175)
24 KOG4658 Apoptotic ATPase [Sign 98.7 1.1E-08 2.3E-13 90.3 3.4 80 32-112 546-629 (889)
25 PF13855 LRR_8: Leucine rich r 98.7 2.1E-08 4.5E-13 59.7 3.6 56 31-87 1-59 (61)
26 PLN03150 hypothetical protein; 98.7 5.6E-08 1.2E-12 83.4 6.9 90 33-122 420-512 (623)
27 COG4886 Leucine-rich repeat (L 98.6 4.6E-08 1E-12 79.4 4.5 110 35-146 97-213 (394)
28 KOG4237 Extracellular matrix p 98.5 4.1E-09 9E-14 83.3 -3.3 78 32-109 68-148 (498)
29 PLN03150 hypothetical protein; 98.5 3.8E-07 8.3E-12 78.3 7.7 91 22-112 433-526 (623)
30 KOG4237 Extracellular matrix p 98.5 1.1E-08 2.4E-13 81.0 -1.9 129 37-168 52-195 (498)
31 KOG1259 Nischarin, modulator o 98.4 5.2E-08 1.1E-12 75.1 -0.5 124 31-157 284-415 (490)
32 cd00116 LRR_RI Leucine-rich re 98.4 1.5E-07 3.3E-12 73.9 1.8 146 26-172 76-261 (319)
33 KOG1259 Nischarin, modulator o 98.4 6.4E-08 1.4E-12 74.6 -0.4 115 19-136 295-416 (490)
34 PF13855 LRR_8: Leucine rich r 98.3 6.8E-07 1.5E-11 53.1 3.7 59 53-113 1-61 (61)
35 KOG4658 Apoptotic ATPase [Sign 98.3 2.7E-07 5.9E-12 81.6 2.4 87 25-112 565-653 (889)
36 PRK15386 type III secretion pr 98.3 2.2E-06 4.7E-11 69.4 6.6 131 28-171 49-187 (426)
37 cd00116 LRR_RI Leucine-rich re 98.2 3.5E-07 7.6E-12 71.8 1.2 14 100-113 192-205 (319)
38 PF12799 LRR_4: Leucine Rich r 98.1 3.5E-06 7.6E-11 46.6 3.0 37 32-69 2-39 (44)
39 PF12799 LRR_4: Leucine Rich r 98.0 6.9E-06 1.5E-10 45.4 3.3 32 54-86 2-33 (44)
40 PRK15386 type III secretion pr 98.0 3E-05 6.5E-10 62.9 8.2 58 32-97 73-134 (426)
41 KOG3207 Beta-tubulin folding c 97.9 3.7E-06 8E-11 67.7 0.8 38 26-63 141-182 (505)
42 KOG4579 Leucine-rich repeat (L 97.6 5.3E-06 1.1E-10 57.1 -1.6 94 32-127 28-126 (177)
43 KOG4579 Leucine-rich repeat (L 97.6 5.4E-06 1.2E-10 57.1 -1.9 89 29-119 51-141 (177)
44 KOG0531 Protein phosphatase 1, 97.6 2.7E-05 5.9E-10 63.9 1.5 88 27-118 91-179 (414)
45 KOG3207 Beta-tubulin folding c 97.5 4.4E-05 9.6E-10 61.6 1.5 143 27-169 168-334 (505)
46 KOG0531 Protein phosphatase 1, 97.1 0.00012 2.7E-09 60.0 0.1 115 29-146 70-190 (414)
47 KOG1859 Leucine-rich repeat pr 97.0 4.2E-05 9.2E-10 65.5 -3.1 85 28-116 184-269 (1096)
48 KOG1644 U2-associated snRNP A' 97.0 0.0013 2.8E-08 48.3 4.7 52 34-86 45-97 (233)
49 KOG3665 ZYG-1-like serine/thre 97.0 0.00044 9.5E-09 60.2 2.5 90 24-114 166-263 (699)
50 KOG1859 Leucine-rich repeat pr 96.9 2E-05 4.4E-10 67.4 -5.9 80 33-116 166-247 (1096)
51 KOG1644 U2-associated snRNP A' 96.9 0.002 4.4E-08 47.3 4.8 59 54-115 43-102 (233)
52 KOG3665 ZYG-1-like serine/thre 96.9 0.00073 1.6E-08 58.9 2.7 118 53-172 122-261 (699)
53 KOG2120 SCF ubiquitin ligase, 96.8 3.7E-05 8.1E-10 59.5 -5.2 36 137-172 333-374 (419)
54 KOG2123 Uncharacterized conser 96.2 0.00016 3.4E-09 55.6 -4.7 81 30-113 18-100 (388)
55 PF00560 LRR_1: Leucine Rich R 96.0 0.0027 6E-08 29.3 0.7 18 55-73 2-19 (22)
56 KOG2120 SCF ubiquitin ligase, 96.0 0.00013 2.9E-09 56.5 -6.1 143 32-174 186-351 (419)
57 PF00560 LRR_1: Leucine Rich R 95.9 0.0025 5.5E-08 29.4 0.4 18 103-120 2-19 (22)
58 KOG2739 Leucine-rich acidic nu 95.9 0.007 1.5E-07 46.0 2.8 85 30-115 42-130 (260)
59 PF13306 LRR_5: Leucine rich r 95.9 0.046 1E-06 36.8 6.6 81 26-111 7-91 (129)
60 PF13504 LRR_7: Leucine rich r 95.5 0.0098 2.1E-07 25.6 1.4 16 32-47 2-17 (17)
61 KOG2739 Leucine-rich acidic nu 95.4 0.014 3.1E-07 44.3 2.8 63 51-115 41-105 (260)
62 KOG2982 Uncharacterized conser 95.3 0.0058 1.3E-07 47.7 0.4 81 27-111 67-156 (418)
63 KOG2123 Uncharacterized conser 95.2 0.0015 3.2E-08 50.4 -2.9 81 26-107 36-123 (388)
64 KOG2982 Uncharacterized conser 95.0 0.043 9.3E-07 43.0 4.5 67 20-87 83-156 (418)
65 KOG1909 Ran GTPase-activating 94.3 0.018 3.9E-07 45.7 0.9 87 28-114 154-254 (382)
66 PF13306 LRR_5: Leucine rich r 94.2 0.2 4.3E-06 33.6 6.0 86 25-117 29-118 (129)
67 KOG4341 F-box protein containi 94.1 0.013 2.8E-07 47.6 -0.2 39 138-176 397-441 (483)
68 KOG3864 Uncharacterized conser 93.2 0.0086 1.9E-07 44.0 -2.4 78 33-110 103-185 (221)
69 KOG1909 Ran GTPase-activating 92.8 0.084 1.8E-06 42.0 2.3 148 22-172 111-309 (382)
70 smart00370 LRR Leucine-rich re 92.0 0.16 3.5E-06 24.1 2.0 17 31-47 2-18 (26)
71 smart00369 LRR_TYP Leucine-ric 92.0 0.16 3.5E-06 24.1 2.0 17 31-47 2-18 (26)
72 COG5238 RNA1 Ran GTPase-activa 87.5 0.25 5.5E-06 38.4 0.9 92 25-117 24-136 (388)
73 KOG0473 Leucine-rich repeat pr 85.8 0.01 2.2E-07 44.8 -7.2 82 30-113 41-123 (326)
74 KOG0473 Leucine-rich repeat pr 85.4 0.019 4.2E-07 43.4 -5.8 83 43-127 30-114 (326)
75 KOG1947 Leucine rich repeat pr 85.1 0.34 7.3E-06 40.0 0.6 35 52-86 187-223 (482)
76 smart00367 LRR_CC Leucine-rich 85.0 0.76 1.6E-05 21.8 1.6 16 76-91 1-16 (26)
77 smart00364 LRR_BAC Leucine-ric 78.5 1.5 3.4E-05 21.0 1.3 16 32-47 3-18 (26)
78 smart00365 LRR_SD22 Leucine-ri 76.6 2.3 5E-05 20.4 1.6 16 31-46 2-17 (26)
79 PF13516 LRR_6: Leucine Rich r 75.6 1.3 2.7E-05 20.4 0.5 14 31-44 2-15 (24)
80 KOG3864 Uncharacterized conser 72.9 1.5 3.3E-05 32.5 0.6 32 142-173 151-188 (221)
81 KOG1947 Leucine rich repeat pr 67.8 2.6 5.7E-05 34.8 1.1 87 25-111 208-305 (482)
82 KOG4341 F-box protein containi 67.4 2.7 5.8E-05 34.7 1.0 87 27-113 316-413 (483)
83 smart00368 LRR_RI Leucine rich 64.0 5.5 0.00012 19.2 1.4 14 32-45 3-16 (28)
84 COG5238 RNA1 Ran GTPase-activa 46.2 24 0.00052 27.9 3.0 93 25-118 52-174 (388)
85 KOG3763 mRNA export factor TAP 37.6 17 0.00037 31.2 1.1 64 29-92 216-285 (585)
No 1
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=5.3e-17 Score=114.63 Aligned_cols=142 Identities=18% Similarity=0.256 Sum_probs=124.1
Q ss_pred cCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904 29 EADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH 107 (189)
Q Consensus 29 ~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~ 107 (189)
.+.+++.|.+++|.++.+| .++.+.+|++|++.+ ++++++|..++.+++|+.|++.- +++..+|.+++.++.|+.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhh
Confidence 5667888999999999998 999999999999988 78999999999999999999986 67888999999999999999
Q ss_pred ccCccCCC--CChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---cccccccceeccCCc
Q 037904 108 LEGTAIRG--LPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKKDSD 172 (189)
Q Consensus 108 l~~~~~~~--lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~~~~ 172 (189)
+..|.+.+ +|..|-.++.|+ .+.++.+|..++.+++|+. ...-+.+-++| +.+..|+.|++.+..
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 99998754 788887777776 7899999999999999999 44446677888 788889999988865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.52 E-value=4.1e-14 Score=126.39 Aligned_cols=142 Identities=19% Similarity=0.204 Sum_probs=73.0
Q ss_pred CCCcEEEccCCCcc-CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904 31 DTLWEVLSDGTDIK-EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL 108 (189)
Q Consensus 31 ~~L~~L~l~~~~l~-~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l 108 (189)
++|++|++++|.+. .+| .++++.+|++|++++|.....+|..++++++|++|++++|.....+|..++.+.+|+.|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 33444444444443 234 5555566666666665444455555666666666666655444455555566666666666
Q ss_pred cCccCC-CCChhchhccCCC-----CCCCC-CccccccCcccccc--ccCCcCccccC---cccccccceeccCCc
Q 037904 109 EGTAIR-GLPASIELLFGNA-----APNLK-NVPETLGNVESLEV--RLSCHKRAKMQ---NDFDCVEQIAKKDSD 172 (189)
Q Consensus 109 ~~~~~~-~lp~~~~~L~~L~-----~~~l~-~lp~~~~~l~~L~~--l~~~~~l~~~~---~~l~~L~~L~l~~~~ 172 (189)
++|.+. .+|..++.+++|+ .+.+. .+|.+++++++|+. +.++.....+| ..+++|+.|++++|.
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 665554 3455555555554 23332 34555555555555 33333223344 344555555555543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.52 E-value=5.2e-14 Score=125.68 Aligned_cols=150 Identities=16% Similarity=0.119 Sum_probs=98.3
Q ss_pred CcchhhhcCCCCcEEEccCCCcc-CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCC
Q 037904 22 NCSRLWEEADTLWEVLSDGTDIK-EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSS 99 (189)
Q Consensus 22 ~~~~~~~~l~~L~~L~l~~~~l~-~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 99 (189)
..+..+..+++|++|++++|.+. .+| .+.++++|++|++++|.....+|..++++++|+.|++++|.....+|..++.
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 34455677888888888888775 456 7788888888888887666677777888888888888876555567777777
Q ss_pred CCCCcEEEccCccCC-CCChhchhccCCC-----CCCCC-CccccccCcccccc--ccCCcCccccC---ccccccccee
Q 037904 100 RDELLEIHLEGTAIR-GLPASIELLFGNA-----APNLK-NVPETLGNVESLEV--RLSCHKRAKMQ---NDFDCVEQIA 167 (189)
Q Consensus 100 l~~L~~l~l~~~~~~-~lp~~~~~L~~L~-----~~~l~-~lp~~~~~l~~L~~--l~~~~~l~~~~---~~l~~L~~L~ 167 (189)
+++|++|++++|.+. .+|..++.+++|+ .+.+. .+|.++..+++|+. +.+|.....+| ..+++|+.|+
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 778888888777765 4566666666665 33332 34555555555555 33333223333 3344455555
Q ss_pred ccCC
Q 037904 168 KKDS 171 (189)
Q Consensus 168 l~~~ 171 (189)
++++
T Consensus 315 l~~n 318 (968)
T PLN00113 315 LFSN 318 (968)
T ss_pred CCCC
Confidence 5444
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.46 E-value=3.9e-13 Score=121.77 Aligned_cols=148 Identities=22% Similarity=0.376 Sum_probs=97.2
Q ss_pred hcCCCCcEEEccCC-CccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 28 EEADTLWEVLSDGT-DIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 28 ~~l~~L~~L~l~~~-~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
..+++|+.|+++++ .++.+|.+..+++|+.|++++|..+..+|..+.++++|+.|++++|+.+..+|..+ .+++|+.|
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L 709 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL 709 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE
Confidence 45667777777664 45555655666777777777777677777767777777777777776666666543 34444444
Q ss_pred ---------------------EccCccCCCCChhc--hhccC----------------------------CC------CC
Q 037904 107 ---------------------HLEGTAIRGLPASI--ELLFG----------------------------NA------AP 129 (189)
Q Consensus 107 ---------------------~l~~~~~~~lp~~~--~~L~~----------------------------L~------~~ 129 (189)
+++++.+..+|..+ .+|.. |+ +.
T Consensus 710 ~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 710 NLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred eCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence 44445555555421 11111 11 33
Q ss_pred CCCCccccccCcccccc--ccCCcCccccC--cccccccceeccCCcchhh
Q 037904 130 NLKNVPETLGNVESLEV--RLSCHKRAKMQ--NDFDCVEQIAKKDSDSWKK 176 (189)
Q Consensus 130 ~l~~lp~~~~~l~~L~~--l~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~ 176 (189)
.+..+|.+++++++|+. +.+|+.++.+| ..+++|+.|++++|..+..
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence 45567888888888988 88898999888 4578899999999877654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.43 E-value=9.1e-15 Score=120.92 Aligned_cols=153 Identities=19% Similarity=0.256 Sum_probs=133.6
Q ss_pred CcchhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCC
Q 037904 22 NCSRLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSR 100 (189)
Q Consensus 22 ~~~~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 100 (189)
..|..+..+.+|+.++++.|++..+| .+-++.+|+.|+|++ +.++++....+.+.+|++|+++. +.++.+|+.+..+
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL 290 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKL 290 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchHHHhhh
Confidence 34555677889999999999999999 888899999999999 67888888888889999999998 6788999999999
Q ss_pred CCCcEEEccCccC--CCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---cccccccceecc
Q 037904 101 DELLEIHLEGTAI--RGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKK 169 (189)
Q Consensus 101 ~~L~~l~l~~~~~--~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~ 169 (189)
+.|+.|.+..|.+ ..+|.+++.|..|. .|.++-+|++++++..|+. -.+||.+..+| +.++.|+.||+.
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeecc
Confidence 9999999988875 57999999999888 7888899999999999999 88889999999 778889999998
Q ss_pred CCcchhh
Q 037904 170 DSDSWKK 176 (189)
Q Consensus 170 ~~~~l~~ 176 (189)
....+..
T Consensus 371 eNpnLVM 377 (1255)
T KOG0444|consen 371 ENPNLVM 377 (1255)
T ss_pred CCcCccC
Confidence 8887654
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=2.9e-15 Score=105.92 Aligned_cols=138 Identities=19% Similarity=0.185 Sum_probs=118.8
Q ss_pred chhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCC-ccCccccCCCC
Q 037904 24 SRLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKF-REFPEKTSSRD 101 (189)
Q Consensus 24 ~~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~-~~lp~~~~~l~ 101 (189)
+.-+..+.+|+.|++.+|+++++| +++.+++|+.|++.- +.+..+|.+|+.++.|+.||+++++.- ..+|..+-.+.
T Consensus 49 ppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred CCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence 333567889999999999999999 999999999999987 678999999999999999999985433 45888888888
Q ss_pred CCcEEEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc--ccCCcCccccCcccccc
Q 037904 102 ELLEIHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV--RLSCHKRAKMQNDFDCV 163 (189)
Q Consensus 102 ~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~--l~~~~~l~~~~~~l~~L 163 (189)
.|+.|.++.|.++-+|+.++.|++|+ .+.+-++|.+++.++.|+. +.+ +.++.+|..+.+|
T Consensus 128 tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg-nrl~vlppel~~l 195 (264)
T KOG0617|consen 128 TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG-NRLTVLPPELANL 195 (264)
T ss_pred HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc-ceeeecChhhhhh
Confidence 89999999999999999999999988 7888899999999999998 666 7788888444443
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=6.8e-13 Score=120.24 Aligned_cols=123 Identities=18% Similarity=0.325 Sum_probs=102.2
Q ss_pred CCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCcc-CCCCChhchhccCCC--CC
Q 037904 53 FGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTA-IRGLPASIELLFGNA--AP 129 (189)
Q Consensus 53 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~-~~~lp~~~~~L~~L~--~~ 129 (189)
.+|+.|++++|..+..+|.+++++++|+.|++++|+.+..+|..+ .+++|+.|++++|. +..+|....+++.|. .+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence 367788888888888899999999999999999998898898776 68889999999864 455666555555444 78
Q ss_pred CCCCccccccCcccccc--ccCCcCccccC---cccccccceeccCCcchhh
Q 037904 130 NLKNVPETLGNVESLEV--RLSCHKRAKMQ---NDFDCVEQIAKKDSDSWKK 176 (189)
Q Consensus 130 ~l~~lp~~~~~l~~L~~--l~~~~~l~~~~---~~l~~L~~L~l~~~~~l~~ 176 (189)
.++.+|.++..+++|+. +.+|++++.+| ..+++|+.+++++|.+++.
T Consensus 857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 857 GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 89999999999999998 88999999998 6788899999999988864
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.28 E-value=3.1e-13 Score=112.02 Aligned_cols=135 Identities=22% Similarity=0.301 Sum_probs=98.2
Q ss_pred CC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCccCCCCChhchhcc
Q 037904 46 PL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLF 124 (189)
Q Consensus 46 ~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~~~~~L~ 124 (189)
+| ++..+.+|..++++. +.+..+|+.+.++.+|+.|++++ +.++++-...+.-.+|.+|++++|++..+|..++.|+
T Consensus 214 ~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT 291 (1255)
T ss_pred CCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchhccchHHHhhhH
Confidence 45 666667777777776 56777777777777777777777 5666665554444567777777788888888777777
Q ss_pred CCC-----C--CCCCCccccccCcccccc-ccCCcCccccC---cccccccceeccCCcchhhcccccccc
Q 037904 125 GNA-----A--PNLKNVPETLGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKKDSDSWKKNVDEGIKL 184 (189)
Q Consensus 125 ~L~-----~--~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~~~~~l~~~~~~~~~~ 184 (189)
.|+ . -.++.+|++++.+..|+. .+.+|+++-+| ..+..|+.|.++... +-. +|++|-+
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiT-LPeaIHl 360 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LIT-LPEAIHL 360 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eee-chhhhhh
Confidence 776 2 356789999999999999 88889999999 567789999887655 433 6666544
No 9
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=4.4e-13 Score=109.57 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=125.1
Q ss_pred CCcchhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCC
Q 037904 21 GNCSRLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSS 99 (189)
Q Consensus 21 ~~~~~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 99 (189)
...++.+.++..|++++++.|++..+| .+..|+ |++|-+++ ++++.+|+.++....|..|+.+. +.+..+|..++.
T Consensus 111 r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~ 187 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGY 187 (722)
T ss_pred eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhh-hhhhhchHHhhh
Confidence 334555677888899999999999888 776665 88888887 67899999999888999999988 467889999999
Q ss_pred CCCCcEEEccCccCCCCChhchhccCCC----CCCCCCccccccCcccccc-ccCCcCccccC------cccccccceec
Q 037904 100 RDELLEIHLEGTAIRGLPASIELLFGNA----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ------NDFDCVEQIAK 168 (189)
Q Consensus 100 l~~L~~l~l~~~~~~~lp~~~~~L~~L~----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~------~~l~~L~~L~l 168 (189)
+.+|+.+++..|.+..+|+.+..|+-.+ ||++..+|-.|.+|+.|+. ...||-+++-| |...-.++|++
T Consensus 188 l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~ 267 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLST 267 (722)
T ss_pred HHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecc
Confidence 9999999999999999999888776444 9999999999999999999 88889999887 55666788888
Q ss_pred cCC
Q 037904 169 KDS 171 (189)
Q Consensus 169 ~~~ 171 (189)
..|
T Consensus 268 qA~ 270 (722)
T KOG0532|consen 268 QAC 270 (722)
T ss_pred hhc
Confidence 888
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.17 E-value=2.2e-12 Score=101.90 Aligned_cols=139 Identities=19% Similarity=0.209 Sum_probs=117.2
Q ss_pred CcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCc
Q 037904 33 LWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGT 111 (189)
Q Consensus 33 L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~ 111 (189)
+...+++.|++.++| .+..++.+++.-+..++.+.-+|..++.+++|..|++++ +.+-++|...+.+-.||.+++++|
T Consensus 390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc
Confidence 667788888888888 777777766654444477777888889999999999998 678899999999889999999999
Q ss_pred cCCCCChhchhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC---cccccccceeccCCc
Q 037904 112 AIRGLPASIELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKKDSD 172 (189)
Q Consensus 112 ~~~~lp~~~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~~~~ 172 (189)
.+..+|+.+..+..++ .+.+..++.+ +.+|.+|++ ..+.|.++.+| +++.+|++|++.|..
T Consensus 469 rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 469 RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 9999999776666665 6889999875 999999999 77889999999 999999999999975
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.12 E-value=1.1e-12 Score=103.63 Aligned_cols=142 Identities=18% Similarity=0.246 Sum_probs=104.5
Q ss_pred hhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcE
Q 037904 27 WEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLE 105 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 105 (189)
+.++..+..+++++|++.++| +++.+.+++.++.++ +.+..+|+.++.+.++..++.+. +.+.++|+.++.+..+..
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLED 141 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhh
Confidence 446778888999999999998 888888999999988 56888888888888888888888 567788888888888888
Q ss_pred EEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---cccccccceeccC
Q 037904 106 IHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKKD 170 (189)
Q Consensus 106 l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~~ 170 (189)
++..+|++..+|+++..+..|. .+.+..+|+..-+|+.|+. ....+-++.+| +.+.+|..|++..
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~ 215 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR 215 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh
Confidence 8888888888888766665443 5666666665444666665 44445555666 4444555444433
No 12
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=5.4e-12 Score=103.29 Aligned_cols=140 Identities=22% Similarity=0.310 Sum_probs=117.9
Q ss_pred cCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904 29 EADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH 107 (189)
Q Consensus 29 ~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~ 107 (189)
.+..|..+.++.|.+..+| .+.++..|+.++++. +++..+|..+..|+ |+.|.+++ ++++.+|+.++....|..++
T Consensus 96 ~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 96 AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhh
Confidence 3445666777888888888 888889999999998 67889998888776 88888887 68899999999888999999
Q ss_pred ccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---cccccccceeccCCc
Q 037904 108 LEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKKDSD 172 (189)
Q Consensus 108 l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~~~~ 172 (189)
.+.|.+..+|..+++|..|+ -|++..+|.+++.++ |.. ...||++..+| ..|+.|++|.+++..
T Consensus 173 ~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 173 VSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 99999999999998888887 688899999888777 555 88999999999 777888888887754
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.02 E-value=2.9e-11 Score=99.53 Aligned_cols=144 Identities=17% Similarity=0.137 Sum_probs=81.5
Q ss_pred hcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCc
Q 037904 28 EEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSSRDELL 104 (189)
Q Consensus 28 ~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~ 104 (189)
-.+.++++|++..|++..+. .+-+++.|+.|++++|..-..-+.+++.+++|++|++++ +.+.++++ ++..++.|+
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhh
Confidence 34556666666666666664 556666677777776443333345666666777777776 45555553 455556666
Q ss_pred EEEccCccCCCCChh-chhccCCC-----CCCCC----CccccccCcccccc-ccCCcCccccC----cccccccceecc
Q 037904 105 EIHLEGTAIRGLPAS-IELLFGNA-----APNLK----NVPETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKK 169 (189)
Q Consensus 105 ~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~----~lp~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~ 169 (189)
.|+|++|.++.+.++ |..+++|+ .|.+. .--..+.+|++|+. ...-|+++.+| ..+..|++|++.
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 666666666555432 33333333 22221 11123556666766 44446677777 556667777766
Q ss_pred CCc
Q 037904 170 DSD 172 (189)
Q Consensus 170 ~~~ 172 (189)
+..
T Consensus 425 ~Na 427 (873)
T KOG4194|consen 425 DNA 427 (873)
T ss_pred CCc
Confidence 543
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.01 E-value=1.5e-09 Score=94.24 Aligned_cols=39 Identities=33% Similarity=0.435 Sum_probs=22.2
Q ss_pred CCCEEeccCCCCCccCccccCCCCCCcEEEccCccCCCCChh
Q 037904 78 YLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPAS 119 (189)
Q Consensus 78 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~~ 119 (189)
+|+.|++++ +.+..+|..+. .+|+.|++++|.++.+|..
T Consensus 263 ~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 263 ALQSLDLFH-NKISCLPENLP--EELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred CCCEEECcC-CccCccccccC--CCCcEEECCCCccccCccc
Confidence 456666654 34555555443 3566666666666655543
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.01 E-value=7.3e-10 Score=96.07 Aligned_cols=131 Identities=17% Similarity=0.232 Sum_probs=78.0
Q ss_pred CCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC
Q 037904 32 TLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG 110 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~ 110 (189)
+|+.|++++|+++.+| .+. .+|+.|++++ +.+..+|..+. .+|+.|++++| .+..+|..+. .+|+.|++++
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQS 313 (754)
T ss_pred cccEEECcCCccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcC
Confidence 3455555555555555 332 3678888876 46677777553 58999999985 6777776543 3567777777
Q ss_pred ccCCCCChhc-hhccCCC--CCCCCCccccccCcccccc-ccCCcCccccC-cccccccceeccCCc
Q 037904 111 TAIRGLPASI-ELLFGNA--APNLKNVPETLGNVESLEV-RLSCHKRAKMQ-NDFDCVEQIAKKDSD 172 (189)
Q Consensus 111 ~~~~~lp~~~-~~L~~L~--~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~-~~l~~L~~L~l~~~~ 172 (189)
|.+..+|..+ ..|+.|. .+.++.+|..+. ++|+. ....+.+..+| ..+++|+.|++++|.
T Consensus 314 N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 314 NSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLPPTITTLDVSRNA 378 (754)
T ss_pred CccccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhcCCcCEEECCCCc
Confidence 7777666533 3344443 556666665443 45555 33334455555 334556666666654
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.94 E-value=5.7e-10 Score=92.14 Aligned_cols=139 Identities=19% Similarity=0.200 Sum_probs=63.8
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccC-ccccCCCCCCcEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREF-PEKTSSRDELLEI 106 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~l 106 (189)
.++++|++++|.|+.+. .|.++.+|.+|.|++ +.++.+|. .|+++++|+.|++.. +.++.+ -..+..+++|+.+
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhh
Confidence 34555555555555553 455555555555555 34445543 344555555555555 233322 1233444444444
Q ss_pred EccCccCCCCChh----chhccCCC--CCCCCCccc-cccCcccccc-ccCCcCccccC----cccccccceeccCC
Q 037904 107 HLEGTAIRGLPAS----IELLFGNA--APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDS 171 (189)
Q Consensus 107 ~l~~~~~~~lp~~----~~~L~~L~--~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~ 171 (189)
.+.+|.+..+-.+ +.++..|. .|++..+.+ ++.+++.|+. ....|.++.+. ...++|+.|+++..
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 4444443333221 12222111 344444444 3445555555 44445555544 34455555555543
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.89 E-value=1.9e-10 Score=98.86 Aligned_cols=147 Identities=20% Similarity=0.252 Sum_probs=108.0
Q ss_pred chhhhcCCCCcEEEccCCCccCCC--CccC-------------------------CCCCcEEeccCCcCCccCcccccCC
Q 037904 24 SRLWEEADTLWEVLSDGTDIKEPL--SIEL-------------------------LFGLVQLTLNGCKNLEHLPRTISAL 76 (189)
Q Consensus 24 ~~~~~~l~~L~~L~l~~~~l~~~p--~~~~-------------------------l~~L~~L~l~~~~~l~~lp~~~~~l 76 (189)
+.....++.|+.|++..|++..+| .+.- ...|+.|.+.+|..-...-+.+.+.
T Consensus 303 p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 303 PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF 382 (1081)
T ss_pred CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence 334455677888888888777666 2211 1234445555533222334446778
Q ss_pred CCCCEEeccCCCCCccCcc-ccCCCCCCcEEEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccC
Q 037904 77 KYLSTLNLSGLLKFREFPE-KTSSRDELLEIHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLS 149 (189)
Q Consensus 77 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~ 149 (189)
.+|+.|++++ +.+..+|+ .+.++..|+.|++++|.++.+|..+..+..|+ .|.+..+| .+..++.|+. ..+
T Consensus 383 ~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 383 KHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred cceeeeeecc-cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecc
Confidence 8899999999 57888886 46788899999999999999998877777666 67888999 6889999999 888
Q ss_pred CcCccccC---ccc-ccccceeccCCc
Q 037904 150 CHKRAKMQ---NDF-DCVEQIAKKDSD 172 (189)
Q Consensus 150 ~~~l~~~~---~~l-~~L~~L~l~~~~ 172 (189)
||.+..+. ... ++|++||++|..
T Consensus 461 ~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 461 CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cchhhhhhhhhhCCCcccceeeccCCc
Confidence 99998765 444 799999999876
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=2.3e-09 Score=77.33 Aligned_cols=84 Identities=25% Similarity=0.279 Sum_probs=28.2
Q ss_pred CCCCcEEEccCCCccCCCCcc-CCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcccc-CCCCCCcEEE
Q 037904 30 ADTLWEVLSDGTDIKEPLSIE-LLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKT-SSRDELLEIH 107 (189)
Q Consensus 30 l~~L~~L~l~~~~l~~~p~~~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~l~ 107 (189)
...+++|++++|.|+.+..++ .+.+|+.|++++ +.++.++. +..++.|+.|++++ +.++.+++.+ ..+++|+.|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~-N~I~~l~~-l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSN-NQITKLEG-LPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TT-S--S--TT-----TT--EEE--S-S---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCC-CCCccccC-ccChhhhhhcccCC-CCCCccccchHHhCCcCCEEE
Confidence 346789999999888876444 578899999998 56777754 77889999999998 5777776554 3578899999
Q ss_pred ccCccCCCC
Q 037904 108 LEGTAIRGL 116 (189)
Q Consensus 108 l~~~~~~~l 116 (189)
+++|.+.++
T Consensus 95 L~~N~I~~l 103 (175)
T PF14580_consen 95 LSNNKISDL 103 (175)
T ss_dssp -TTS---SC
T ss_pred CcCCcCCCh
Confidence 999988764
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.84 E-value=1.4e-08 Score=88.15 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=20.7
Q ss_pred CCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcc
Q 037904 32 TLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPR 71 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~ 71 (189)
+|+.|++.+|+++.+|. ..++|+.|++++| .++.+|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N-~LtsLP~ 259 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV 259 (788)
T ss_pred CCCEEEccCCcCCCCCC--CCCCCcEEEecCC-ccCcccC
Confidence 45666666666666651 1345666666663 4555553
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.79 E-value=2.4e-08 Score=86.75 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=46.8
Q ss_pred CCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904 30 ADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL 108 (189)
Q Consensus 30 l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l 108 (189)
.++|++|++++|+++.+| .. .+|+.|++.+| .+..+|... .+|+.|++++| .+..+|.. +++|+.|++
T Consensus 241 p~~Lk~LdLs~N~LtsLP~lp---~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdL 309 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVLP---PGLLELSIFSN-PLTHLPALP---SGLCKLWIFGN-QLTSLPVL---PPGLQELSV 309 (788)
T ss_pred CCCCcEEEecCCccCcccCcc---cccceeeccCC-chhhhhhch---hhcCEEECcCC-cccccccc---ccccceeEC
Confidence 578999999999999988 33 46777777774 455555422 34555555552 44445432 234555555
Q ss_pred cCccCCCCCh
Q 037904 109 EGTAIRGLPA 118 (189)
Q Consensus 109 ~~~~~~~lp~ 118 (189)
++|.+..+|.
T Consensus 310 S~N~L~~Lp~ 319 (788)
T PRK15387 310 SDNQLASLPA 319 (788)
T ss_pred CCCccccCCC
Confidence 5555554443
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.77 E-value=1e-09 Score=94.41 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=61.2
Q ss_pred CCCCCCcEEEccCccCCCCChh-chhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceec
Q 037904 98 SSRDELLEIHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAK 168 (189)
Q Consensus 98 ~~l~~L~~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l 168 (189)
-+..+|+.|+|++|.+..+|.+ +.+|..|+ +|.++.+|..+..+..|++ .++.|.+..+| ..++.|+.+|+
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDL 459 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEec
Confidence 3366788899999999888864 34444443 8999999999999999999 99999999999 77889999999
Q ss_pred cCCc
Q 037904 169 KDSD 172 (189)
Q Consensus 169 ~~~~ 172 (189)
+...
T Consensus 460 S~N~ 463 (1081)
T KOG0618|consen 460 SCNN 463 (1081)
T ss_pred ccch
Confidence 8654
No 22
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.75 E-value=6e-09 Score=84.58 Aligned_cols=140 Identities=27% Similarity=0.409 Sum_probs=83.5
Q ss_pred CCCCcEEEccCCCccCCC-CccCCC-CCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904 30 ADTLWEVLSDGTDIKEPL-SIELLF-GLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH 107 (189)
Q Consensus 30 l~~L~~L~l~~~~l~~~p-~~~~l~-~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~ 107 (189)
.+.+..|++.++.++++| ....+. +|+.|++++ +.+..+|..+..+++|+.|++++ +.+.++|...+....|+.++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhhee
Confidence 355667777777777766 444453 677777766 45666665566677777777776 35666665554556666677
Q ss_pred ccCccCCCCChhchh---ccCCC-------------------------CCCCCCccccccCcccccc-ccCCcCccccC-
Q 037904 108 LEGTAIRGLPASIEL---LFGNA-------------------------APNLKNVPETLGNVESLEV-RLSCHKRAKMQ- 157 (189)
Q Consensus 108 l~~~~~~~lp~~~~~---L~~L~-------------------------~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~- 157 (189)
+++|.+..+|...+. +..|. .+.+..++..++.++.++. ...++.+..++
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence 777666666654222 22222 2333333445555666666 55556666666
Q ss_pred -cccccccceeccCC
Q 037904 158 -NDFDCVEQIAKKDS 171 (189)
Q Consensus 158 -~~l~~L~~L~l~~~ 171 (189)
+.+.+++.|++++.
T Consensus 273 ~~~~~~l~~L~~s~n 287 (394)
T COG4886 273 LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccCccCEEeccCc
Confidence 55667777777664
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=2.2e-08 Score=72.26 Aligned_cols=88 Identities=23% Similarity=0.217 Sum_probs=44.7
Q ss_pred cCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccc-cCCCCCCEEeccCCCCCccCc--cccCCCCCCcE
Q 037904 29 EADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTI-SALKYLSTLNLSGLLKFREFP--EKTSSRDELLE 105 (189)
Q Consensus 29 ~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~ 105 (189)
.+.+|+.|++++|.++.++++..++.|++|++++ +.++.+++.+ ..+++|+.|++++ +++..+. ..+..+++|+.
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--TT----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCccccCccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcce
Confidence 4678999999999999998888899999999999 5678887655 4699999999998 5666554 35678899999
Q ss_pred EEccCccCCCCCh
Q 037904 106 IHLEGTAIRGLPA 118 (189)
Q Consensus 106 l~l~~~~~~~lp~ 118 (189)
|++.+|++.+-+.
T Consensus 118 L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 118 LSLEGNPVCEKKN 130 (175)
T ss_dssp EE-TT-GGGGSTT
T ss_pred eeccCCcccchhh
Confidence 9999999876443
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=1.1e-08 Score=90.30 Aligned_cols=80 Identities=28% Similarity=0.306 Sum_probs=50.1
Q ss_pred CCcEEEccCCC--ccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904 32 TLWEVLSDGTD--IKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH 107 (189)
Q Consensus 32 ~L~~L~l~~~~--l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~ 107 (189)
.|+.|.+.+|. +..++ .|..++.|++||+++|..+..+|..++.+.+|++|++++ ..+..+|.+++.+..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheec
Confidence 46666666653 44444 355666666666666666666666666666666666666 45666666666666666666
Q ss_pred ccCcc
Q 037904 108 LEGTA 112 (189)
Q Consensus 108 l~~~~ 112 (189)
+..+.
T Consensus 625 l~~~~ 629 (889)
T KOG4658|consen 625 LEVTG 629 (889)
T ss_pred ccccc
Confidence 66544
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=2.1e-08 Score=59.74 Aligned_cols=56 Identities=29% Similarity=0.265 Sum_probs=41.6
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCC
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGL 87 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~ 87 (189)
++|++|++++|+++.+| .+.++++|++|++++| .++.++ ..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 46778888888888886 6778888888888874 455555 35677888888887775
No 26
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=5.6e-08 Score=83.37 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=78.3
Q ss_pred CcEEEccCCCccC-CC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC
Q 037904 33 LWEVLSDGTDIKE-PL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG 110 (189)
Q Consensus 33 L~~L~l~~~~l~~-~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~ 110 (189)
++.|++++|.+.. +| .+..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|+.++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 7789999998875 47 899999999999999776678998899999999999999776678999999999999999999
Q ss_pred ccCC-CCChhchh
Q 037904 111 TAIR-GLPASIEL 122 (189)
Q Consensus 111 ~~~~-~lp~~~~~ 122 (189)
|.+. .+|..++.
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 9886 57776654
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=4.6e-08 Score=79.43 Aligned_cols=110 Identities=21% Similarity=0.314 Sum_probs=85.0
Q ss_pred EEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCC-CCCEEeccCCCCCccCccccCCCCCCcEEEccCcc
Q 037904 35 EVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALK-YLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTA 112 (189)
Q Consensus 35 ~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 112 (189)
.+....+.+..-. .+..+..++.|++.+ +.+..+|....... +|+.|++++ +.+..+|..++.++.|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCch
Confidence 4777777764444 666678899999988 67889998777775 999999999 6788888888999999999999999
Q ss_pred CCCCChhchhccCCC-----CCCCCCccccccCcccccc
Q 037904 113 IRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV 146 (189)
Q Consensus 113 ~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~ 146 (189)
+.++|...+.+..|. .+.+..+|........|+.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~ 213 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEE 213 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhh
Confidence 999988544444443 7788888875444444555
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.53 E-value=4.1e-09 Score=83.35 Aligned_cols=78 Identities=22% Similarity=0.206 Sum_probs=55.2
Q ss_pred CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEEEc
Q 037904 32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEIHL 108 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l 108 (189)
..++++++.|+|+.+| .|+.+++|+.|+|++|+....-|.+|.++.++..|-+.++++++.+|+ .++.+.+++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 4677888888888887 788888888888888554444566788888888877777777777774 3445444444433
Q ss_pred c
Q 037904 109 E 109 (189)
Q Consensus 109 ~ 109 (189)
.
T Consensus 148 N 148 (498)
T KOG4237|consen 148 N 148 (498)
T ss_pred C
Confidence 3
No 29
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=3.8e-07 Score=78.31 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=76.9
Q ss_pred CcchhhhcCCCCcEEEccCCCcc-CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCC
Q 037904 22 NCSRLWEEADTLWEVLSDGTDIK-EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSS 99 (189)
Q Consensus 22 ~~~~~~~~l~~L~~L~l~~~~l~-~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 99 (189)
..+..+..+++|+.|++++|++. .+| .+..+.+|+.|++++|+....+|..++++++|+.|++++|.....+|..++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 34455778899999999999998 568 8999999999999998777789999999999999999998777789988765
Q ss_pred C-CCCcEEEccCcc
Q 037904 100 R-DELLEIHLEGTA 112 (189)
Q Consensus 100 l-~~L~~l~l~~~~ 112 (189)
. .++..+++.+|.
T Consensus 513 ~~~~~~~l~~~~N~ 526 (623)
T PLN03150 513 RLLHRASFNFTDNA 526 (623)
T ss_pred ccccCceEEecCCc
Confidence 3 356778887764
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.49 E-value=1.1e-08 Score=81.02 Aligned_cols=129 Identities=19% Similarity=0.245 Sum_probs=77.6
Q ss_pred EccCCCccCCC-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC-ccC
Q 037904 37 LSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG-TAI 113 (189)
Q Consensus 37 ~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~-~~~ 113 (189)
+-++-+++++| .+. ...+.++|.. +.++.+|+ .|+.+++|+.||+++|+....-|+.++.+.++..|.+.+ |.|
T Consensus 52 dCr~~GL~eVP~~LP--~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLP--PETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EccCCCcccCcccCC--CcceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 33445677777 333 2455677777 56777775 567888888888888543334467777777777776666 778
Q ss_pred CCCChh-chhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCccccC----cccccccceec
Q 037904 114 RGLPAS-IELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAK 168 (189)
Q Consensus 114 ~~lp~~-~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l 168 (189)
+++|.+ |+.|..|+ .+.+..++. .+..++++.. ...-+.++.++ ..+..++.+++
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhh
Confidence 887764 56665554 445555544 4555665555 22224555555 33444455444
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.38 E-value=5.2e-08 Score=75.07 Aligned_cols=124 Identities=23% Similarity=0.246 Sum_probs=74.9
Q ss_pred CCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEcc
Q 037904 31 DTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLE 109 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~ 109 (189)
..|+++++++|.|+.+. ++.-+++++.|++++| .+..+.. +..+++|+.||+++ +.+..+...-..+-++++|.++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehh
Confidence 45777888888888877 7777788888888884 4555544 66778888888887 4455444333445566777787
Q ss_pred CccCCCCCh--hchhccCCC--CCCCCCccc--cccCcccccc-ccCCcCccccC
Q 037904 110 GTAIRGLPA--SIELLFGNA--APNLKNVPE--TLGNVESLEV-RLSCHKRAKMQ 157 (189)
Q Consensus 110 ~~~~~~lp~--~~~~L~~L~--~~~l~~lp~--~~~~l~~L~~-l~~~~~l~~~~ 157 (189)
.|.++.+.. .+..|.+|. .|+++.+-. ++++++-|+. ..-.|.+..++
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 777765432 122333333 455554432 4566666665 22224444444
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.36 E-value=1.5e-07 Score=73.88 Aligned_cols=146 Identities=18% Similarity=0.141 Sum_probs=77.8
Q ss_pred hhhcCCCCcEEEccCCCccCC-C-CccCCC---CCcEEeccCCcCCc----cCcccccCC-CCCCEEeccCCCCCc----
Q 037904 26 LWEEADTLWEVLSDGTDIKEP-L-SIELLF---GLVQLTLNGCKNLE----HLPRTISAL-KYLSTLNLSGLLKFR---- 91 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~-p-~~~~l~---~L~~L~l~~~~~l~----~lp~~~~~l-~~L~~L~l~~~~~~~---- 91 (189)
.+..+++|+.|++++|.+... + .+..+. +|+.|++++|+... .+...+..+ ++|+.|++++|....
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 344566777777777766532 2 333333 37777777754321 122234455 677777777754331
Q ss_pred cCccccCCCCCCcEEEccCccCCC-----CChhchhccCCC-----CCCCC-----CccccccCcccccc--ccCCcCcc
Q 037904 92 EFPEKTSSRDELLEIHLEGTAIRG-----LPASIELLFGNA-----APNLK-----NVPETLGNVESLEV--RLSCHKRA 154 (189)
Q Consensus 92 ~lp~~~~~l~~L~~l~l~~~~~~~-----lp~~~~~L~~L~-----~~~l~-----~lp~~~~~l~~L~~--l~~~~~l~ 154 (189)
.++..+..+.+|+.|++++|.+.+ ++..+..++.|+ .+.+. .+...+..+++|+. +.+| .+.
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~ 234 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLT 234 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCc
Confidence 233445556677777777776652 223333222333 33443 22333455666776 4443 344
Q ss_pred ccC-----cc----cccccceeccCCc
Q 037904 155 KMQ-----ND----FDCVEQIAKKDSD 172 (189)
Q Consensus 155 ~~~-----~~----l~~L~~L~l~~~~ 172 (189)
... .. .+.|+.|++++|.
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCC
Confidence 321 22 3678888887774
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.36 E-value=6.4e-08 Score=74.57 Aligned_cols=115 Identities=18% Similarity=0.102 Sum_probs=89.7
Q ss_pred CCCCcchhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccC
Q 037904 19 EPGNCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTS 98 (189)
Q Consensus 19 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 98 (189)
.+....+.+.-.|.++.|+++.|++..+..++.+.+|+.|++++ +.+..+..+-..+.+.+.|.+.+ +.+..+. +++
T Consensus 295 ~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LS-GL~ 371 (490)
T KOG1259|consen 295 LITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQ-NKIETLS-GLR 371 (490)
T ss_pred chhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehhh-hhHhhhh-hhH
Confidence 34444556667899999999999999887788899999999999 56777766666788899999988 4565553 677
Q ss_pred CCCCCcEEEccCccCCCC--ChhchhccCCC-----CCCCCCccc
Q 037904 99 SRDELLEIHLEGTAIRGL--PASIELLFGNA-----APNLKNVPE 136 (189)
Q Consensus 99 ~l~~L~~l~l~~~~~~~l--p~~~~~L~~L~-----~~~l~~lp~ 136 (189)
.+-+|..|++++|+|+++ ..++++|+.|. .|.+..+|+
T Consensus 372 KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 788899999999999876 34677777766 666666553
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=6.8e-07 Score=53.10 Aligned_cols=59 Identities=27% Similarity=0.376 Sum_probs=49.4
Q ss_pred CCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEEccCccC
Q 037904 53 FGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIHLEGTAI 113 (189)
Q Consensus 53 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~~ 113 (189)
++|++|++++| .+..+|. .+.++++|++|++++ +.+..++ ..+..+++|+++++++|.+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999995 6788875 678999999999998 4666666 5789999999999999864
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.32 E-value=2.7e-07 Score=81.56 Aligned_cols=87 Identities=24% Similarity=0.267 Sum_probs=74.6
Q ss_pred hhhhcCCCCcEEEccCC-CccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCC
Q 037904 25 RLWEEADTLWEVLSDGT-DIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDE 102 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~-~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 102 (189)
++|..++.|+.|++++| .+.++| +++.+.+|++|++++ ..+..+|.++.++..|.+|++..+.....+|.....+++
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhccc
Confidence 34777999999999987 678889 999999999999998 678899999999999999999987777777777777999
Q ss_pred CcEEEccCcc
Q 037904 103 LLEIHLEGTA 112 (189)
Q Consensus 103 L~~l~l~~~~ 112 (189)
|++|.+....
T Consensus 644 Lr~L~l~~s~ 653 (889)
T KOG4658|consen 644 LRVLRLPRSA 653 (889)
T ss_pred ccEEEeeccc
Confidence 9999887754
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.28 E-value=2.2e-06 Score=69.40 Aligned_cols=131 Identities=21% Similarity=0.315 Sum_probs=84.3
Q ss_pred hcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904 28 EEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH 107 (189)
Q Consensus 28 ~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~ 107 (189)
..+.+++.|++++|.++.+|.+ -.+|+.|.+++|..++.+|..+ ..+|+.|++++|..+..+|.. |+.|+
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence 3468899999999999988832 2369999999999998888755 358999999999888878764 56666
Q ss_pred ccCcc---CCCCChhchhccCCCCC--CCCCccccccCcccccc--ccCCcCccccC-cccccccceeccCC
Q 037904 108 LEGTA---IRGLPASIELLFGNAAP--NLKNVPETLGNVESLEV--RLSCHKRAKMQ-NDFDCVEQIAKKDS 171 (189)
Q Consensus 108 l~~~~---~~~lp~~~~~L~~L~~~--~l~~lp~~~~~l~~L~~--l~~~~~l~~~~-~~l~~L~~L~l~~~ 171 (189)
+..+. +..+|.++..|.--.++ ....+|..+ .++|+. +.+|..+ .+| +.+.+|+.|+++.+
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLPESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccccccCcEEEeccc
Confidence 76654 45677766554310011 111111100 134555 5555544 344 44556777777653
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.24 E-value=3.5e-07 Score=71.83 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=6.7
Q ss_pred CCCCcEEEccCccC
Q 037904 100 RDELLEIHLEGTAI 113 (189)
Q Consensus 100 l~~L~~l~l~~~~~ 113 (189)
.++|+.|++++|.+
T Consensus 192 ~~~L~~L~L~~n~i 205 (319)
T cd00116 192 NCNLEVLDLNNNGL 205 (319)
T ss_pred CCCCCEEeccCCcc
Confidence 34455555554444
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3.5e-06 Score=46.59 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=22.5
Q ss_pred CCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccC
Q 037904 32 TLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHL 69 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~l 69 (189)
+|++|++++|+++++| .+++|++|++|++++| .++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 5667777777777666 4666777777777664 34443
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=6.9e-06 Score=45.41 Aligned_cols=32 Identities=41% Similarity=0.589 Sum_probs=14.5
Q ss_pred CCcEEeccCCcCCccCcccccCCCCCCEEeccC
Q 037904 54 GLVQLTLNGCKNLEHLPRTISALKYLSTLNLSG 86 (189)
Q Consensus 54 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~ 86 (189)
+|++|++++ +.++.+|+.++++++|+.|++++
T Consensus 2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccC-CCCcccCchHhCCCCCCEEEecC
Confidence 345555554 23444444444555555555544
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.02 E-value=3e-05 Score=62.92 Aligned_cols=58 Identities=24% Similarity=0.427 Sum_probs=40.5
Q ss_pred CCcEEEccCC-CccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccC--CCCCccCcccc
Q 037904 32 TLWEVLSDGT-DIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSG--LLKFREFPEKT 97 (189)
Q Consensus 32 ~L~~L~l~~~-~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~--~~~~~~lp~~~ 97 (189)
+|++|.+.+| +++.+| .+. .+|+.|++++|..+..+|.+ |+.|++.. |..+..+|.++
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVPNGL 134 (426)
T ss_pred CCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEEeCCCCCcccccCcchH
Confidence 5999999885 677777 453 58999999998888888874 45555543 33355666543
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=3.7e-06 Score=67.66 Aligned_cols=38 Identities=13% Similarity=-0.046 Sum_probs=21.9
Q ss_pred hhhcCCCCcEEEccCCCccCC-C---CccCCCCCcEEeccCC
Q 037904 26 LWEEADTLWEVLSDGTDIKEP-L---SIELLFGLVQLTLNGC 63 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~-p---~~~~l~~L~~L~l~~~ 63 (189)
....+++++.|++++|-+... | -...+++|+.|+++.|
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc
Confidence 445566677777777644433 2 2345566666666664
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.63 E-value=5.3e-06 Score=57.14 Aligned_cols=94 Identities=16% Similarity=0.242 Sum_probs=53.6
Q ss_pred CCcEEEccCCCccCCC----CccCCCCCcEEeccCCcCCccCcccccC-CCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 32 TLWEVLSDGTDIKEPL----SIELLFGLVQLTLNGCKNLEHLPRTISA-LKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p----~~~~l~~L~~L~l~~~~~l~~lp~~~~~-l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
.+..++++.|.+..++ .+....+|...++++ +.++..|+.+.. .+.+.++++.+ +.+.++|..+..++.|+.+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence 3455566666544332 344455566666666 455666655542 33566666666 4566666666666666666
Q ss_pred EccCccCCCCChhchhccCCC
Q 037904 107 HLEGTAIRGLPASIELLFGNA 127 (189)
Q Consensus 107 ~l~~~~~~~lp~~~~~L~~L~ 127 (189)
+++.|.+...|.-+..|.+|.
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred ccccCccccchHHHHHHHhHH
Confidence 666666666555444444443
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.60 E-value=5.4e-06 Score=57.08 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=71.3
Q ss_pred cCCCCcEEEccCCCccCCC-Ccc-CCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 29 EADTLWEVLSDGTDIKEPL-SIE-LLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 29 ~l~~L~~L~l~~~~l~~~p-~~~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
....|...++++|.++++| .+. ..+.+++|++++ +.+.++|.++..++.|+.+++++ +.+...|..+-.+.++..|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHh
Confidence 3445667799999999998 544 445789999998 78999999999999999999999 4566777766667788888
Q ss_pred EccCccCCCCChh
Q 037904 107 HLEGTAIRGLPAS 119 (189)
Q Consensus 107 ~l~~~~~~~lp~~ 119 (189)
+...+...++|-.
T Consensus 129 ds~~na~~eid~d 141 (177)
T KOG4579|consen 129 DSPENARAEIDVD 141 (177)
T ss_pred cCCCCccccCcHH
Confidence 8888888777654
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.58 E-value=2.7e-05 Score=63.87 Aligned_cols=88 Identities=22% Similarity=0.205 Sum_probs=65.7
Q ss_pred hhcCCCCcEEEccCCCccCCCC-ccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcE
Q 037904 27 WEEADTLWEVLSDGTDIKEPLS-IELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLE 105 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~-~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 105 (189)
+..+.++..+++.+|.++.+.. +..+.+|++|++++ +.++.+.. +..++.|+.|++.+ +.+..+. .+..+..|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG-LSTLTLLKELNLSG-NLISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccc-hhhccchhhheecc-Ccchhcc-CCccchhhhc
Confidence 4566788888888888888874 78888899999988 56666654 56677788888888 4555554 4455778888
Q ss_pred EEccCccCCCCCh
Q 037904 106 IHLEGTAIRGLPA 118 (189)
Q Consensus 106 l~l~~~~~~~lp~ 118 (189)
+++++|.+..+..
T Consensus 167 l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 167 LDLSYNRIVDIEN 179 (414)
T ss_pred ccCCcchhhhhhh
Confidence 8888888876654
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=4.4e-05 Score=61.63 Aligned_cols=143 Identities=16% Similarity=0.156 Sum_probs=79.2
Q ss_pred hhcCCCCcEEEccCCCccCCC---CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccccCCCCC
Q 037904 27 WEEADTLWEVLSDGTDIKEPL---SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEKTSSRDE 102 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p---~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 102 (189)
...+++|+.|+++.|.+.-.. .-..+.+|+.|.++.|.....- .-....+++|+.|++..|..+.........+..
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 456778888888887665432 1234567777888777544322 222346777888888775433222222334456
Q ss_pred CcEEEccCccCCCCCh--hchhccCCC-----CCCCCCc--ccc-----ccCcccccc-ccCCcCccccC-----ccccc
Q 037904 103 LLEIHLEGTAIRGLPA--SIELLFGNA-----APNLKNV--PET-----LGNVESLEV-RLSCHKRAKMQ-----NDFDC 162 (189)
Q Consensus 103 L~~l~l~~~~~~~lp~--~~~~L~~L~-----~~~l~~l--p~~-----~~~l~~L~~-l~~~~~l~~~~-----~~l~~ 162 (189)
|+.|+|++|.+.+++. ..+.++.|+ .+.+.++ |+. ...+++|+. ..+-|++.+++ ..+++
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN 327 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence 7788888887766652 345555444 2233322 221 134566666 45556665555 44455
Q ss_pred ccceecc
Q 037904 163 VEQIAKK 169 (189)
Q Consensus 163 L~~L~l~ 169 (189)
|+.|.+.
T Consensus 328 lk~l~~~ 334 (505)
T KOG3207|consen 328 LKHLRIT 334 (505)
T ss_pred hhhhhcc
Confidence 5555543
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.09 E-value=0.00012 Score=60.00 Aligned_cols=115 Identities=23% Similarity=0.227 Sum_probs=80.8
Q ss_pred cCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904 29 EADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH 107 (189)
Q Consensus 29 ~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~ 107 (189)
.+..+..+.+..|.+...- .+..+.+++.+++.. +.+..+...+..+++|+.|++++ +.++.+. .+..+..|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhhe
Confidence 3556667778888887744 678889999999988 56777766677899999999999 5777664 456677799999
Q ss_pred ccCccCCCCChh--chhccCCC--CCCCCCcccc-ccCcccccc
Q 037904 108 LEGTAIRGLPAS--IELLFGNA--APNLKNVPET-LGNVESLEV 146 (189)
Q Consensus 108 l~~~~~~~lp~~--~~~L~~L~--~~~l~~lp~~-~~~l~~L~~ 146 (189)
+.+|.+..+... +..++.+. ++.++.+... ...+.+++.
T Consensus 147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~ 190 (414)
T KOG0531|consen 147 LSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEE 190 (414)
T ss_pred eccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence 999999876542 34444333 5555554432 244444544
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.05 E-value=4.2e-05 Score=65.53 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=58.3
Q ss_pred hcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 28 EEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 28 ~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
.-++.++.|++++|+++++..+..|.+|+.||+++ +.+..+|. +...+. |+.|.+++ +-++.+- ++.++.+|+.|
T Consensus 184 qll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL~-gie~LksL~~L 259 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLRN-NALTTLR-GIENLKSLYGL 259 (1096)
T ss_pred HHHHHhhhhccchhhhhhhHHHHhccccccccccc-chhccccccchhhhh-heeeeecc-cHHHhhh-hHHhhhhhhcc
Confidence 34567778888888777766667777888888887 56777764 333444 77787777 3454443 56677778888
Q ss_pred EccCccCCCC
Q 037904 107 HLEGTAIRGL 116 (189)
Q Consensus 107 ~l~~~~~~~l 116 (189)
++++|.+.+.
T Consensus 260 DlsyNll~~h 269 (1096)
T KOG1859|consen 260 DLSYNLLSEH 269 (1096)
T ss_pred chhHhhhhcc
Confidence 8888776553
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.02 E-value=0.0013 Score=48.31 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=21.8
Q ss_pred cEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccC-CCCCCEEeccC
Q 037904 34 WEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISA-LKYLSTLNLSG 86 (189)
Q Consensus 34 ~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~-l~~L~~L~l~~ 86 (189)
..+++++|.+..++.+..+..|.+|.+.+ +.++.+.+.+.. +++|+.|.+.+
T Consensus 45 d~iDLtdNdl~~l~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ceecccccchhhcccCCCccccceEEecC-CcceeeccchhhhccccceEEecC
Confidence 33444444444444444444444444444 233333333332 23344444444
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.99 E-value=0.00044 Score=60.21 Aligned_cols=90 Identities=23% Similarity=0.130 Sum_probs=54.2
Q ss_pred chhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCc-cCcccccCCCCCCEEeccCCCCCccCc-------c
Q 037904 24 SRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLE-HLPRTISALKYLSTLNLSGLLKFREFP-------E 95 (189)
Q Consensus 24 ~~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp-------~ 95 (189)
...+.++++|..||+++++++.+.+++++++|++|.+++-.... ..-..+.++++|+.||++.-. ....+ +
T Consensus 166 ~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~-~~~~~~ii~qYle 244 (699)
T KOG3665|consen 166 SQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK-NNDDTKIIEQYLE 244 (699)
T ss_pred HHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc-cccchHHHHHHHH
Confidence 34566777888888888777776667777777777776633222 111245677788888877622 22111 1
Q ss_pred ccCCCCCCcEEEccCccCC
Q 037904 96 KTSSRDELLEIHLEGTAIR 114 (189)
Q Consensus 96 ~~~~l~~L~~l~l~~~~~~ 114 (189)
.-..++.||.|+.+++.+.
T Consensus 245 c~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 245 CGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hcccCccccEEecCCcchh
Confidence 2233667777777765443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.94 E-value=2e-05 Score=67.40 Aligned_cols=80 Identities=23% Similarity=0.220 Sum_probs=56.1
Q ss_pred CcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcccc-CCCCCCcEEEccC
Q 037904 33 LWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKT-SSRDELLEIHLEG 110 (189)
Q Consensus 33 L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~l~l~~ 110 (189)
|...+++.|.+..+. ++.-+.+++.|+|++ +++..+. .+..|+.|++||+++ +.+..+|.-- ..+ .|+.|++++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLsh-Nk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSH-NKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccch-hhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeecc
Confidence 455566777777776 777778888888888 4556555 477888888888888 5677776422 223 378888888
Q ss_pred ccCCCC
Q 037904 111 TAIRGL 116 (189)
Q Consensus 111 ~~~~~l 116 (189)
|.++.+
T Consensus 242 N~l~tL 247 (1096)
T KOG1859|consen 242 NALTTL 247 (1096)
T ss_pred cHHHhh
Confidence 877664
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.89 E-value=0.002 Score=47.28 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=25.0
Q ss_pred CCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCC-CCCCcEEEccCccCCC
Q 037904 54 GLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSS-RDELLEIHLEGTAIRG 115 (189)
Q Consensus 54 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~-l~~L~~l~l~~~~~~~ 115 (189)
....++|++ +.+..++. +.++..|.+|.+.+ +.+..+...+.. ++.|+.|.+.+|++.+
T Consensus 43 ~~d~iDLtd-Ndl~~l~~-lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~ 102 (233)
T KOG1644|consen 43 QFDAIDLTD-NDLRKLDN-LPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQE 102 (233)
T ss_pred ccceecccc-cchhhccc-CCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhh
Confidence 344445544 23333332 44445555555544 233333333222 2334555555554443
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.85 E-value=0.00073 Score=58.87 Aligned_cols=118 Identities=21% Similarity=0.273 Sum_probs=72.9
Q ss_pred CCCcEEeccCCcCCc-cCccccc-CCCCCCEEeccCCCCC--ccCccccCCCCCCcEEEccCccCCCCChhchhccCCC-
Q 037904 53 FGLVQLTLNGCKNLE-HLPRTIS-ALKYLSTLNLSGLLKF--REFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNA- 127 (189)
Q Consensus 53 ~~L~~L~l~~~~~l~-~lp~~~~-~l~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~l~l~~~~~~~lp~~~~~L~~L~- 127 (189)
.+|+.|++++...+. .-|..++ .+|+|+.|.+.+ ..+ .++.....++++|..||+++++++.+ .++++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 568888887743322 2233344 578899999887 222 22334566788899999999998887 6677888777
Q ss_pred ----CCCCCCcc--ccccCcccccc--ccCCcCccc--cC-------cccccccceeccCCc
Q 037904 128 ----APNLKNVP--ETLGNVESLEV--RLSCHKRAK--MQ-------NDFDCVEQIAKKDSD 172 (189)
Q Consensus 128 ----~~~l~~lp--~~~~~l~~L~~--l~~~~~l~~--~~-------~~l~~L~~L~l~~~~ 172 (189)
+-.++.-. ..+.++++|+. ++.-..... +. ..+|+|+.||+++-+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 22333222 13566777776 322221111 11 568899999998754
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=3.7e-05 Score=59.49 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=23.0
Q ss_pred cccCcccccc--ccCCcCccc---cC-cccccccceeccCCc
Q 037904 137 TLGNVESLEV--RLSCHKRAK---MQ-NDFDCVEQIAKKDSD 172 (189)
Q Consensus 137 ~~~~l~~L~~--l~~~~~l~~---~~-~~l~~L~~L~l~~~~ 172 (189)
.+..++.|+. +..|-.+-- +. ...+.|.+|++.||-
T Consensus 333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 3556677777 555544321 11 778889999988874
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.00016 Score=55.64 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=52.7
Q ss_pred CCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc--ccCCCCCCcEEE
Q 037904 30 ADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE--KTSSRDELLEIH 107 (189)
Q Consensus 30 l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~l~ 107 (189)
+.+.+.|+.-||++.++.-...++.|++|.|+- +.++.+.+ +.+|++|++|++.. +.+..+.+ -++++++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence 345666777777777765445667777777777 45566654 66777777777776 34544443 256677777777
Q ss_pred ccCccC
Q 037904 108 LEGTAI 113 (189)
Q Consensus 108 l~~~~~ 113 (189)
|..|..
T Consensus 95 L~ENPC 100 (388)
T KOG2123|consen 95 LDENPC 100 (388)
T ss_pred hccCCc
Confidence 766654
No 55
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.03 E-value=0.0027 Score=29.31 Aligned_cols=18 Identities=39% Similarity=0.635 Sum_probs=8.1
Q ss_pred CcEEeccCCcCCccCcccc
Q 037904 55 LVQLTLNGCKNLEHLPRTI 73 (189)
Q Consensus 55 L~~L~l~~~~~l~~lp~~~ 73 (189)
|++|++++| .++.+|.++
T Consensus 2 L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp ESEEEETSS-EESEEGTTT
T ss_pred ccEEECCCC-cCEeCChhh
Confidence 444555554 333444443
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.00013 Score=56.52 Aligned_cols=143 Identities=19% Similarity=0.067 Sum_probs=82.2
Q ss_pred CCcEEEccCCCccCCC---CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc--ccCCCCCCcEE
Q 037904 32 TLWEVLSDGTDIKEPL---SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE--KTSSRDELLEI 106 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p---~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~l 106 (189)
.+++|+++...++.-. -++.|.+|+.|.++++.--..+-..+..=..|+.++++.|+.+++... .+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3677788777665432 356677777777777443333334455556788888888877765442 35677778888
Q ss_pred EccCccCCC-CC----hh-chhccCCC---C-CCC--CCccccccCcccccc--ccCCcCccccC----cccccccceec
Q 037904 107 HLEGTAIRG-LP----AS-IELLFGNA---A-PNL--KNVPETLGNVESLEV--RLSCHKRAKMQ----NDFDCVEQIAK 168 (189)
Q Consensus 107 ~l~~~~~~~-lp----~~-~~~L~~L~---~-~~l--~~lp~~~~~l~~L~~--l~~~~~l~~~~----~~l~~L~~L~l 168 (189)
+++.+.... .. .. -+.++.|. + .++ ..+---..+.+.|.. +.+|..+..-- -.++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 887765421 11 01 12333333 0 001 011111334555555 66666665421 56778999999
Q ss_pred cCCcch
Q 037904 169 KDSDSW 174 (189)
Q Consensus 169 ~~~~~l 174 (189)
+.|-.+
T Consensus 346 sRCY~i 351 (419)
T KOG2120|consen 346 SRCYDI 351 (419)
T ss_pred hhhcCC
Confidence 998866
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.95 E-value=0.0025 Score=29.42 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=8.5
Q ss_pred CcEEEccCccCCCCChhc
Q 037904 103 LLEIHLEGTAIRGLPASI 120 (189)
Q Consensus 103 L~~l~l~~~~~~~lp~~~ 120 (189)
|++|++++|.++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555444444443
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.91 E-value=0.007 Score=46.00 Aligned_cols=85 Identities=18% Similarity=0.125 Sum_probs=47.9
Q ss_pred CCCCcEEEccCCCccCCCCccCCCCCcEEeccCC--cCCccCcccccCCCCCCEEeccCCCCCccCc--cccCCCCCCcE
Q 037904 30 ADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGC--KNLEHLPRTISALKYLSTLNLSGLLKFREFP--EKTSSRDELLE 105 (189)
Q Consensus 30 l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~--~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~ 105 (189)
...+..+.+.+..++.+..+..+++|+.|.++.| .....++.-...+++|+++++++ ++++.+. ..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhhhcchhh
Confidence 3445555555555555545666677777777776 33444554445567777777777 3444322 12334445666
Q ss_pred EEccCccCCC
Q 037904 106 IHLEGTAIRG 115 (189)
Q Consensus 106 l~l~~~~~~~ 115 (189)
|++..+....
T Consensus 121 Ldl~n~~~~~ 130 (260)
T KOG2739|consen 121 LDLFNCSVTN 130 (260)
T ss_pred hhcccCCccc
Confidence 6666655443
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.86 E-value=0.046 Score=36.79 Aligned_cols=81 Identities=14% Similarity=0.180 Sum_probs=40.8
Q ss_pred hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCC
Q 037904 26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRD 101 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~ 101 (189)
++.++++|+.+.+.. .++.++ .+.++.+++.+.+.. . +..++. .+.++.+++.+.+.. .+..++. .+..+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc-c-ccccceeeeecccccccccccc--cccccccccccccc
Confidence 345566777777764 456665 677777777777765 2 555553 456666777777754 3333443 345566
Q ss_pred CCcEEEccCc
Q 037904 102 ELLEIHLEGT 111 (189)
Q Consensus 102 ~L~~l~l~~~ 111 (189)
.|+.+.+..+
T Consensus 82 ~l~~i~~~~~ 91 (129)
T PF13306_consen 82 NLKNIDIPSN 91 (129)
T ss_dssp TECEEEETTT
T ss_pred cccccccCcc
Confidence 7777776543
No 60
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.54 E-value=0.0098 Score=25.60 Aligned_cols=16 Identities=6% Similarity=-0.037 Sum_probs=7.3
Q ss_pred CCcEEEccCCCccCCC
Q 037904 32 TLWEVLSDGTDIKEPL 47 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p 47 (189)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665544
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.39 E-value=0.014 Score=44.34 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=40.4
Q ss_pred CCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCC--CccCccccCCCCCCcEEEccCccCCC
Q 037904 51 LLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLK--FREFPEKTSSRDELLEIHLEGTAIRG 115 (189)
Q Consensus 51 ~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~--~~~lp~~~~~l~~L~~l~l~~~~~~~ 115 (189)
.+..|+.+.+.++. ++++- .+-.+++|+.|.++.++. ...++--...+++|+++++++|.++.
T Consensus 41 ~~~~le~ls~~n~g-ltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cccchhhhhhhccc-eeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 34556666665532 22221 134578999999998632 23344444556899999999999875
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.0058 Score=47.69 Aligned_cols=81 Identities=22% Similarity=0.236 Sum_probs=48.8
Q ss_pred hhcCCCCcEEEccCCCccCCC----CccCCCCCcEEeccCCcC---CccCcccccCCCCCCEEeccCCCCC--ccCcccc
Q 037904 27 WEEADTLWEVLSDGTDIKEPL----SIELLFGLVQLTLNGCKN---LEHLPRTISALKYLSTLNLSGLLKF--REFPEKT 97 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p----~~~~l~~L~~L~l~~~~~---l~~lp~~~~~l~~L~~L~l~~~~~~--~~lp~~~ 97 (189)
-..++.++++++.+|.+.+.. -+.++++|++|++++|.- ++++| -...+|+.|-+.+ +.+ ......+
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNg-T~L~w~~~~s~l 142 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNG-TGLSWTQSTSSL 142 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcC-CCCChhhhhhhh
Confidence 335677889999999888753 456889999999988532 22333 2455778887766 332 1122233
Q ss_pred CCCCCCcEEEccCc
Q 037904 98 SSRDELLEIHLEGT 111 (189)
Q Consensus 98 ~~l~~L~~l~l~~~ 111 (189)
..++.++.++++.|
T Consensus 143 ~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 143 DDLPKVTELHMSDN 156 (418)
T ss_pred hcchhhhhhhhccc
Confidence 44444445544443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.0015 Score=50.44 Aligned_cols=81 Identities=19% Similarity=0.079 Sum_probs=62.9
Q ss_pred hhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcc--cccCCCCCCEEeccCCCCCccCcc-----ccC
Q 037904 26 LWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPR--TISALKYLSTLNLSGLLKFREFPE-----KTS 98 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~-----~~~ 98 (189)
++.+|+.|+.|.++-|.|+.+..+..|+.|+.|+|+. +.+..+.+ -+.++++|+.|-+..|+....-+. .+.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 4678999999999999999886688999999999999 56676654 457889999999988777665543 244
Q ss_pred CCCCCcEEE
Q 037904 99 SRDELLEIH 107 (189)
Q Consensus 99 ~l~~L~~l~ 107 (189)
-+++|+.|+
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 456666654
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.043 Score=43.02 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=46.1
Q ss_pred CCCcchh---hhcCCCCcEEEccCCCccCCC-Cc-cCCCCCcEEeccCCcCCc--cCcccccCCCCCCEEeccCC
Q 037904 20 PGNCSRL---WEEADTLWEVLSDGTDIKEPL-SI-ELLFGLVQLTLNGCKNLE--HLPRTISALKYLSTLNLSGL 87 (189)
Q Consensus 20 ~~~~~~~---~~~l~~L~~L~l~~~~l~~~p-~~-~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~~ 87 (189)
+++++++ +.++|.|+.|+++.|.+...- +. ..+.+|++|-|.+ ..+. .....+..++.++.|+++.|
T Consensus 83 iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 83 ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccc
Confidence 4555543 668999999999999876543 33 3567888888876 3222 23344567888888888874
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.28 E-value=0.018 Score=45.68 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=41.9
Q ss_pred hcCCCCcEEEccCCCccCCC------CccCCCCCcEEeccCCcCCc----cCcccccCCCCCCEEeccCCCCCc----cC
Q 037904 28 EEADTLWEVLSDGTDIKEPL------SIELLFGLVQLTLNGCKNLE----HLPRTISALKYLSTLNLSGLLKFR----EF 93 (189)
Q Consensus 28 ~~l~~L~~L~l~~~~l~~~p------~~~~l~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~l~~~~~~~----~l 93 (189)
.+-+.|+.+....|.+..-+ .+...+.|+.+.+..|..-. -+-..+.++++|+.||+.+|.... .+
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 34455666666666554433 23444555555555532211 112344556666666666543321 12
Q ss_pred ccccCCCCCCcEEEccCccCC
Q 037904 94 PEKTSSRDELLEIHLEGTAIR 114 (189)
Q Consensus 94 p~~~~~l~~L~~l~l~~~~~~ 114 (189)
.+.++..++|+.+++++|.++
T Consensus 234 akaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHhcccchheeecccccccc
Confidence 334444555666666555443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.24 E-value=0.2 Score=33.63 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=50.9
Q ss_pred hhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCC
Q 037904 25 RLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSR 100 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l 100 (189)
..+..++.++.+.+.++ +..++ .+.++..++.+.+.. .+..++. .+.++++++.+++.. .+..++. .+..+
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~ 103 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNC 103 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT-
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccCc--cccEEchhhhcCC
Confidence 34677888999999885 78876 788898899999965 4455554 566799999999976 2555553 45665
Q ss_pred CCCcEEEccCccCCCCC
Q 037904 101 DELLEIHLEGTAIRGLP 117 (189)
Q Consensus 101 ~~L~~l~l~~~~~~~lp 117 (189)
.++.+.+.. .+..++
T Consensus 104 -~l~~i~~~~-~~~~i~ 118 (129)
T PF13306_consen 104 -NLKEINIPS-NITKIE 118 (129)
T ss_dssp -T--EEE-TT-B-SS--
T ss_pred -CceEEEECC-CccEEC
Confidence 788887765 444443
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.09 E-value=0.013 Score=47.59 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=24.8
Q ss_pred ccCcccccc--ccCCcCccccC----cccccccceeccCCcchhh
Q 037904 138 LGNVESLEV--RLSCHKRAKMQ----NDFDCVEQIAKKDSDSWKK 176 (189)
Q Consensus 138 ~~~l~~L~~--l~~~~~l~~~~----~~l~~L~~L~l~~~~~l~~ 176 (189)
-..+..|.. +.+|+.+.+-. ...++|+.+++.+|....+
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 344555555 66777666543 5566788888888776654
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=0.0086 Score=44.01 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=50.0
Q ss_pred CcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-cccc-CCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904 33 LWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTIS-ALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH 107 (189)
Q Consensus 33 L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~-~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~ 107 (189)
++.++-+++.|.... .+.+++.++.|.+.+|..+...- ..++ -.++|+.|++++|+++++.- ..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 556666666665544 56677788888888876655321 1122 34678889999888887643 3455666777666
Q ss_pred ccC
Q 037904 108 LEG 110 (189)
Q Consensus 108 l~~ 110 (189)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 654
No 69
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.76 E-value=0.084 Score=42.03 Aligned_cols=148 Identities=14% Similarity=0.065 Sum_probs=90.5
Q ss_pred CcchhhhcCCCCcEEEccCCCccCC--------------C-CccCCCCCcEEeccCCcCCccCc-----ccccCCCCCCE
Q 037904 22 NCSRLWEEADTLWEVLSDGTDIKEP--------------L-SIELLFGLVQLTLNGCKNLEHLP-----RTISALKYLST 81 (189)
Q Consensus 22 ~~~~~~~~l~~L~~L~l~~~~l~~~--------------p-~~~~l~~L~~L~l~~~~~l~~lp-----~~~~~l~~L~~ 81 (189)
...+++.++..|++|++.+|++... - -.+.-.+|+++...+| .+..-+ ..+...+.|+.
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccce
Confidence 4457888999999999999976531 1 2344578999999884 455443 34556678999
Q ss_pred EeccCCCCCc-----cCccccCCCCCCcEEEccCccCCC-----CChhchhccCCC-----CCCCC-----Ccccccc-C
Q 037904 82 LNLSGLLKFR-----EFPEKTSSRDELLEIHLEGTAIRG-----LPASIELLFGNA-----APNLK-----NVPETLG-N 140 (189)
Q Consensus 82 L~l~~~~~~~-----~lp~~~~~l~~L~~l~l~~~~~~~-----lp~~~~~L~~L~-----~~~l~-----~lp~~~~-~ 140 (189)
+.+..+ .+. .+...+..+++|+.|++..|-++. +...++.+++|+ +..++ .+-..+. .
T Consensus 190 vr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 190 VRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred EEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 988874 332 233467889999999999987643 233344444444 22222 1111111 2
Q ss_pred cccccc--ccCCcCcccc-------C-cccccccceeccCCc
Q 037904 141 VESLEV--RLSCHKRAKM-------Q-NDFDCVEQIAKKDSD 172 (189)
Q Consensus 141 l~~L~~--l~~~~~l~~~-------~-~~l~~L~~L~l~~~~ 172 (189)
.+.|+. +.+ +.++.- + ...+.|..|++++|.
T Consensus 269 ~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 269 APSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred CCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 345555 333 333321 1 457788888888876
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.96 E-value=0.16 Score=24.07 Aligned_cols=17 Identities=12% Similarity=0.048 Sum_probs=10.5
Q ss_pred CCCcEEEccCCCccCCC
Q 037904 31 DTLWEVLSDGTDIKEPL 47 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p 47 (189)
++|+.|++++|+++.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45666666666666665
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.96 E-value=0.16 Score=24.07 Aligned_cols=17 Identities=12% Similarity=0.048 Sum_probs=10.5
Q ss_pred CCCcEEEccCCCccCCC
Q 037904 31 DTLWEVLSDGTDIKEPL 47 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p 47 (189)
++|+.|++++|+++.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45666666666666665
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.51 E-value=0.25 Score=38.38 Aligned_cols=92 Identities=23% Similarity=0.217 Sum_probs=57.0
Q ss_pred hhhhcCCCCcEEEccCCCccC-----CC-CccCCCCCcEEeccCCcCCcc-----------CcccccCCCCCCEEeccCC
Q 037904 25 RLWEEADTLWEVLSDGTDIKE-----PL-SIELLFGLVQLTLNGCKNLEH-----------LPRTISALKYLSTLNLSGL 87 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~-----~p-~~~~l~~L~~L~l~~~~~l~~-----------lp~~~~~l~~L~~L~l~~~ 87 (189)
+.+.-+..+++++++||-+.. +. .+.+-++|+..+++. -+.+. +-..+-.|+.|+..++++|
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 334447788889999986543 23 455666777777765 22221 1233456778888888876
Q ss_pred CCCccCcc----ccCCCCCCcEEEccCccCCCCC
Q 037904 88 LKFREFPE----KTSSRDELLEIHLEGTAIRGLP 117 (189)
Q Consensus 88 ~~~~~lp~----~~~~l~~L~~l~l~~~~~~~lp 117 (189)
-.-..+|+ -+..-..|.+|.+.+|....+.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a 136 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA 136 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence 55555553 3455567778888777765543
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.79 E-value=0.01 Score=44.80 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=52.9
Q ss_pred CCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904 30 ADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL 108 (189)
Q Consensus 30 l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l 108 (189)
....+.|+++.|++-.+. .++-+..+..|+++. +.+.-+|..++....+..++... +.....|.+.+..++++.++.
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhh
Confidence 344556666666655555 556666667777766 55666676666666666666665 456667777777777777766
Q ss_pred cCccC
Q 037904 109 EGTAI 113 (189)
Q Consensus 109 ~~~~~ 113 (189)
..+.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 66543
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.44 E-value=0.019 Score=43.35 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=54.3
Q ss_pred ccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCccCCCCChhc
Q 037904 43 IKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASI 120 (189)
Q Consensus 43 l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~~~ 120 (189)
+.++| .+...+..++||++. +.+..+-..++.++.+..|+++. +.+..+|+.++....++.+++..|..+..|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s-~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSS-NRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhh-hHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccc
Confidence 34455 556666677777776 44555555566667777777776 456667776666666666666667777777776
Q ss_pred hhccCCC
Q 037904 121 ELLFGNA 127 (189)
Q Consensus 121 ~~L~~L~ 127 (189)
+.++.++
T Consensus 108 ~k~~~~k 114 (326)
T KOG0473|consen 108 KKEPHPK 114 (326)
T ss_pred cccCCcc
Confidence 6666655
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=85.12 E-value=0.34 Score=40.04 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=18.8
Q ss_pred CCCCcEEeccCCcCCcc--CcccccCCCCCCEEeccC
Q 037904 52 LFGLVQLTLNGCKNLEH--LPRTISALKYLSTLNLSG 86 (189)
Q Consensus 52 l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~ 86 (189)
++.|+.+.+..|..+.. +-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45556666665555554 223344556666666655
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.99 E-value=0.76 Score=21.76 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=9.9
Q ss_pred CCCCCEEeccCCCCCc
Q 037904 76 LKYLSTLNLSGLLKFR 91 (189)
Q Consensus 76 l~~L~~L~l~~~~~~~ 91 (189)
+++|+.|++++|..++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3566777777766554
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.54 E-value=1.5 Score=21.00 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=8.7
Q ss_pred CCcEEEccCCCccCCC
Q 037904 32 TLWEVLSDGTDIKEPL 47 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p 47 (189)
.|+.|+.++|+++.+|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 3555555555555555
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.65 E-value=2.3 Score=20.37 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=9.8
Q ss_pred CCCcEEEccCCCccCC
Q 037904 31 DTLWEVLSDGTDIKEP 46 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~ 46 (189)
.+|++|+++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666544
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.57 E-value=1.3 Score=20.41 Aligned_cols=14 Identities=14% Similarity=0.038 Sum_probs=6.1
Q ss_pred CCCcEEEccCCCcc
Q 037904 31 DTLWEVLSDGTDIK 44 (189)
Q Consensus 31 ~~L~~L~l~~~~l~ 44 (189)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555443
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.92 E-value=1.5 Score=32.53 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=22.3
Q ss_pred ccccc--ccCCcCccccC----cccccccceeccCCcc
Q 037904 142 ESLEV--RLSCHKRAKMQ----NDFDCVEQIAKKDSDS 173 (189)
Q Consensus 142 ~~L~~--l~~~~~l~~~~----~~l~~L~~L~l~~~~~ 173 (189)
++|+. +++|..+++-. ..+++|+.|++.+.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 55666 77788777766 6677777777777653
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=67.79 E-value=2.6 Score=34.77 Aligned_cols=87 Identities=24% Similarity=0.265 Sum_probs=44.5
Q ss_pred hhhhcCCCCcEEEccCC--CccCC----C-CccCCCCCcEEeccCCcCCccCc-ccc-cCCCCCCEEeccCCCCCcc--C
Q 037904 25 RLWEEADTLWEVLSDGT--DIKEP----L-SIELLFGLVQLTLNGCKNLEHLP-RTI-SALKYLSTLNLSGLLKFRE--F 93 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~--~l~~~----p-~~~~l~~L~~L~l~~~~~l~~lp-~~~-~~l~~L~~L~l~~~~~~~~--l 93 (189)
.+...+++|++|+++++ ..... . ....+++|+.|+++++..++..- ..+ ..+++|+.|.+.+|..++. +
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 34455667777777652 11111 1 23445666777777655433322 112 2366677776666554322 2
Q ss_pred ccccCCCCCCcEEEccCc
Q 037904 94 PEKTSSRDELLEIHLEGT 111 (189)
Q Consensus 94 p~~~~~l~~L~~l~l~~~ 111 (189)
-.....++.|+.|+++++
T Consensus 288 ~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGC 305 (482)
T ss_pred HHHHHhcCcccEEeeecC
Confidence 223445556667666654
No 82
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=67.38 E-value=2.7 Score=34.67 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=55.0
Q ss_pred hhcCCCCcEEEccCC-CccCCC---CccCCCCCcEEeccCCcCCccC--cccccCCCCCCEEeccCCCCCccC-----cc
Q 037904 27 WEEADTLWEVLSDGT-DIKEPL---SIELLFGLVQLTLNGCKNLEHL--PRTISALKYLSTLNLSGLLKFREF-----PE 95 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~-~l~~~p---~~~~l~~L~~L~l~~~~~l~~l--p~~~~~l~~L~~L~l~~~~~~~~l-----p~ 95 (189)
-.+..+|+.+-+++| ++++.. --.++.+|+.+++..|...... -.---+++.|+.+.++.|..+++. ..
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 335678888888887 344443 1245678888888887554433 121236788888888877666543 33
Q ss_pred ccCCCCCCcEEEccCccC
Q 037904 96 KTSSRDELLEIHLEGTAI 113 (189)
Q Consensus 96 ~~~~l~~L~~l~l~~~~~ 113 (189)
.-..+..|..+.++.+..
T Consensus 396 ~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPL 413 (483)
T ss_pred ccccccccceeeecCCCC
Confidence 345566677777777654
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.96 E-value=5.5 Score=19.15 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=8.9
Q ss_pred CCcEEEccCCCccC
Q 037904 32 TLWEVLSDGTDIKE 45 (189)
Q Consensus 32 ~L~~L~l~~~~l~~ 45 (189)
+|++|++++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 56677777766543
No 84
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=46.23 E-value=24 Score=27.86 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=60.2
Q ss_pred hhhhcCCCCcEEEccCCCc---c-CCC--------CccCCCCCcEEeccCCcCCccCccc----ccCCCCCCEEeccCCC
Q 037904 25 RLWEEADTLWEVLSDGTDI---K-EPL--------SIELLFGLVQLTLNGCKNLEHLPRT----ISALKYLSTLNLSGLL 88 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l---~-~~p--------~~~~l~~L~~L~l~~~~~l~~lp~~----~~~l~~L~~L~l~~~~ 88 (189)
+.+.+-++|+..++++-.. . +++ .+.+|++|+..+|+.|.+-...|+. +++-+.|.+|.+++|
T Consensus 52 ~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn- 130 (388)
T COG5238 52 NVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN- 130 (388)
T ss_pred HHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-
Confidence 3455667788887776421 1 112 4567889999999998776666654 456678999999885
Q ss_pred CCccCc--------------cccCCCCCCcEEEccCccCCCCCh
Q 037904 89 KFREFP--------------EKTSSRDELLEIHLEGTAIRGLPA 118 (189)
Q Consensus 89 ~~~~lp--------------~~~~~l~~L~~l~l~~~~~~~lp~ 118 (189)
.++.+. +....-+.|+++....|.+...|.
T Consensus 131 GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 131 GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence 343221 123344678888888887766544
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.60 E-value=17 Score=31.18 Aligned_cols=64 Identities=13% Similarity=-0.021 Sum_probs=38.6
Q ss_pred cCCCCcEEEccCCCccCCC---C-ccCCCCCcEEeccCCcCCccCcccccC--CCCCCEEeccCCCCCcc
Q 037904 29 EADTLWEVLSDGTDIKEPL---S-IELLFGLVQLTLNGCKNLEHLPRTISA--LKYLSTLNLSGLLKFRE 92 (189)
Q Consensus 29 ~l~~L~~L~l~~~~l~~~p---~-~~~l~~L~~L~l~~~~~l~~lp~~~~~--l~~L~~L~l~~~~~~~~ 92 (189)
+.+.+..+++++|++..+. + ....++|..|+|++|........++.. ...|++|-+.+|+-.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 4567788888888776664 1 234578888999886222222222322 23577777777655443
Done!