Query 037904
Match_columns 189
No_of_seqs 121 out of 2682
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:00:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 8.2E-20 2.8E-24 143.5 12.4 158 23-182 96-297 (328)
2 4fcg_A Uncharacterized protein 99.8 1E-19 3.5E-24 142.9 12.9 150 29-181 79-248 (328)
3 3rgz_A Protein brassinosteroid 99.7 7.6E-16 2.6E-20 133.2 14.7 160 24-184 483-726 (768)
4 4eco_A Uncharacterized protein 99.7 1.2E-16 4E-21 135.7 7.7 156 23-181 198-395 (636)
5 2o6q_A Variable lymphocyte rec 99.7 5.8E-15 2E-19 112.6 16.2 145 26-172 56-216 (270)
6 4ecn_A Leucine-rich repeat pro 99.6 3.9E-16 1.3E-20 136.3 9.7 157 23-182 440-638 (876)
7 1ozn_A Reticulon 4 receptor; N 99.6 3.7E-15 1.3E-19 114.3 14.0 147 26-172 51-212 (285)
8 1ogq_A PGIP-2, polygalacturona 99.6 7.4E-16 2.5E-20 120.1 9.8 99 25-123 70-172 (313)
9 3rgz_A Protein brassinosteroid 99.6 3.9E-15 1.3E-19 128.7 14.8 161 22-183 457-701 (768)
10 3m19_A Variable lymphocyte rec 99.6 8.9E-15 3E-19 110.4 14.8 140 31-172 35-190 (251)
11 3rfs_A Internalin B, repeat mo 99.6 1.1E-14 3.6E-19 111.3 15.0 144 27-172 59-216 (272)
12 4eco_A Uncharacterized protein 99.6 6.6E-16 2.3E-20 131.0 8.9 136 44-182 196-372 (636)
13 1ozn_A Reticulon 4 receptor; N 99.6 1.2E-14 3.9E-19 111.6 14.1 148 24-172 73-236 (285)
14 3zyj_A Leucine-rich repeat-con 99.6 1.3E-14 4.3E-19 117.9 15.1 145 26-172 107-266 (440)
15 4ezg_A Putative uncharacterize 99.6 3.4E-15 1.2E-19 108.8 10.5 142 28-172 41-192 (197)
16 1p9a_G Platelet glycoprotein I 99.6 8.9E-15 3.1E-19 112.9 12.9 144 25-170 49-204 (290)
17 1p9a_G Platelet glycoprotein I 99.6 1.9E-14 6.5E-19 111.0 14.7 147 31-182 31-191 (290)
18 2z66_A Variable lymphocyte rec 99.6 4.4E-15 1.5E-19 115.0 10.9 143 29-172 76-234 (306)
19 3zyi_A Leucine-rich repeat-con 99.6 2.6E-14 8.7E-19 116.5 14.9 144 27-172 119-277 (452)
20 3rfs_A Internalin B, repeat mo 99.6 3.1E-14 1E-18 108.7 14.0 146 27-176 37-195 (272)
21 2xwt_C Thyrotropin receptor; s 99.6 6.3E-15 2.1E-19 110.3 10.0 139 32-171 32-189 (239)
22 1ogq_A PGIP-2, polygalacturona 99.6 4.1E-15 1.4E-19 115.9 9.3 157 22-181 116-287 (313)
23 2o6q_A Variable lymphocyte rec 99.6 7.4E-14 2.5E-18 106.4 16.0 143 31-176 37-195 (270)
24 2z62_A TOLL-like receptor 4, v 99.6 2.8E-14 9.6E-19 108.9 13.3 108 26-135 47-165 (276)
25 2o6s_A Variable lymphocyte rec 99.6 2.6E-14 8.9E-19 104.8 12.2 147 30-183 27-186 (208)
26 1h6u_A Internalin H; cell adhe 99.6 5.5E-14 1.9E-18 109.2 14.5 140 27-172 59-206 (308)
27 4ecn_A Leucine-rich repeat pro 99.6 6.5E-15 2.2E-19 128.6 9.6 134 46-182 440-614 (876)
28 3zyj_A Leucine-rich repeat-con 99.6 3.9E-14 1.3E-18 115.0 13.4 146 25-172 130-290 (440)
29 1h6u_A Internalin H; cell adhe 99.6 6.7E-14 2.3E-18 108.8 13.4 140 27-172 81-228 (308)
30 3vq2_A TLR4, TOLL-like recepto 99.6 1.8E-14 6.2E-19 121.0 10.8 102 26-127 371-476 (606)
31 3zyi_A Leucine-rich repeat-con 99.6 4.9E-14 1.7E-18 114.8 12.9 139 31-171 75-228 (452)
32 1h6t_A Internalin B; cell adhe 99.5 8.9E-14 3E-18 107.3 13.1 140 27-172 64-211 (291)
33 3oja_B Anopheles plasmodium-re 99.5 1.2E-13 4E-18 116.4 14.7 88 27-115 95-185 (597)
34 2id5_A Lingo-1, leucine rich r 99.5 6.1E-14 2.1E-18 114.8 12.5 146 26-172 51-211 (477)
35 3e6j_A Variable lymphocyte rec 99.5 2E-13 6.7E-18 101.8 14.2 114 31-146 40-163 (229)
36 2xwt_C Thyrotropin receptor; s 99.5 1.7E-14 6E-19 107.9 8.5 151 26-180 50-222 (239)
37 1xeu_A Internalin C; cellular 99.5 6.4E-14 2.2E-18 106.6 11.7 140 26-172 36-183 (263)
38 3o6n_A APL1; leucine-rich repe 99.5 1.8E-13 6.3E-18 109.3 14.7 88 27-115 89-179 (390)
39 3t6q_A CD180 antigen; protein- 99.5 1.2E-13 4.1E-18 116.1 14.0 103 25-127 272-379 (606)
40 2id5_A Lingo-1, leucine rich r 99.5 1.2E-13 4E-18 113.1 13.4 128 24-151 73-211 (477)
41 1h6t_A Internalin B; cell adhe 99.5 1.3E-13 4.3E-18 106.4 12.8 140 27-172 42-189 (291)
42 3oja_B Anopheles plasmodium-re 99.5 2E-13 7E-18 114.9 13.7 64 24-87 116-181 (597)
43 3m19_A Variable lymphocyte rec 99.5 4.9E-13 1.7E-17 100.8 14.5 128 25-154 53-192 (251)
44 2z62_A TOLL-like receptor 4, v 99.5 1.6E-13 5.3E-18 104.8 11.8 125 31-157 28-165 (276)
45 2z66_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 106.5 11.4 148 25-172 95-259 (306)
46 1xku_A Decorin; proteoglycan, 99.5 4.5E-13 1.5E-17 104.7 14.3 94 31-127 52-148 (330)
47 1xku_A Decorin; proteoglycan, 99.5 6E-13 2E-17 104.0 14.7 151 26-182 71-259 (330)
48 2v9t_B SLIT homolog 2 protein 99.5 5E-13 1.7E-17 99.0 13.5 115 31-146 32-156 (220)
49 3bz5_A Internalin-J, INLJ; leu 99.5 3E-13 1E-17 110.6 13.4 135 27-171 38-180 (457)
50 2z80_A TOLL-like receptor 2, v 99.5 3.7E-14 1.3E-18 111.9 7.8 113 32-146 53-178 (353)
51 4fmz_A Internalin; leucine ric 99.5 5.5E-13 1.9E-17 104.7 14.4 58 27-86 62-119 (347)
52 2z80_A TOLL-like receptor 2, v 99.5 1.3E-13 4.5E-18 108.8 10.7 145 26-172 71-233 (353)
53 3vq2_A TLR4, TOLL-like recepto 99.5 1.7E-13 6E-18 115.0 12.1 114 32-146 33-157 (606)
54 2z63_A TOLL-like receptor 4, v 99.5 9.7E-14 3.3E-18 115.6 10.0 148 25-172 367-529 (570)
55 3o6n_A APL1; leucine-rich repe 99.5 1.9E-13 6.6E-18 109.1 11.2 114 31-146 45-169 (390)
56 2ft3_A Biglycan; proteoglycan, 99.5 5.9E-13 2E-17 104.2 13.8 84 26-113 73-159 (332)
57 1m9s_A Internalin B; cell inva 99.5 4.4E-13 1.5E-17 113.1 13.6 140 27-172 61-208 (605)
58 1wwl_A Monocyte differentiatio 99.5 9E-14 3.1E-18 108.1 8.6 147 28-176 118-288 (312)
59 4ezg_A Putative uncharacterize 99.5 2.4E-13 8.2E-18 98.9 10.3 127 26-154 61-194 (197)
60 3v47_A TOLL-like receptor 5B a 99.5 7.1E-13 2.4E-17 107.6 14.0 103 70-172 292-406 (455)
61 2ell_A Acidic leucine-rich nuc 99.5 1.6E-13 5.5E-18 97.2 8.8 125 30-172 23-158 (168)
62 4ay9_X Follicle-stimulating ho 99.5 1.5E-13 5.2E-18 108.5 9.5 88 31-118 30-121 (350)
63 3t6q_A CD180 antigen; protein- 99.5 4.2E-13 1.4E-17 112.7 12.4 141 32-172 34-190 (606)
64 2ft3_A Biglycan; proteoglycan, 99.5 9.8E-13 3.3E-17 102.9 13.6 94 31-127 54-150 (332)
65 3e6j_A Variable lymphocyte rec 99.5 1.1E-12 3.9E-17 97.7 13.2 137 33-172 21-170 (229)
66 2z63_A TOLL-like receptor 4, v 99.5 4.5E-13 1.5E-17 111.6 12.2 124 32-157 29-165 (570)
67 3o53_A Protein LRIM1, AGAP0063 99.5 6.8E-14 2.3E-18 109.0 6.8 113 32-146 121-241 (317)
68 2z7x_B TOLL-like receptor 1, v 99.5 3.5E-13 1.2E-17 111.3 10.9 145 28-172 321-479 (520)
69 4glp_A Monocyte differentiatio 99.5 2.4E-13 8.2E-18 105.6 9.3 145 28-172 114-283 (310)
70 1wwl_A Monocyte differentiatio 99.5 2E-13 7E-18 106.1 8.7 139 31-172 149-307 (312)
71 2xot_A Amphoterin-induced prot 99.5 6.6E-13 2.3E-17 105.3 11.8 139 31-171 39-199 (361)
72 4fmz_A Internalin; leucine ric 99.5 1.7E-12 5.9E-17 101.9 14.0 87 27-116 84-170 (347)
73 4g8a_A TOLL-like receptor 4; l 99.4 4.5E-13 1.5E-17 112.5 11.2 125 31-157 52-189 (635)
74 1jl5_A Outer protein YOPM; leu 99.4 1.1E-12 3.9E-17 107.1 13.0 134 32-172 132-268 (454)
75 2v70_A SLIT-2, SLIT homolog 2 99.4 2.2E-12 7.4E-17 95.6 13.3 82 33-116 34-120 (220)
76 1ziw_A TOLL-like receptor 3; i 99.4 1.2E-12 4.2E-17 111.4 13.3 141 31-172 25-182 (680)
77 2z81_A CD282 antigen, TOLL-lik 99.4 5.1E-13 1.8E-17 110.9 10.5 96 31-127 26-126 (549)
78 1m9s_A Internalin B; cell inva 99.4 1.2E-12 4E-17 110.5 12.5 140 27-172 39-186 (605)
79 3v47_A TOLL-like receptor 5B a 99.4 2.7E-12 9.1E-17 104.2 13.8 82 94-176 292-385 (455)
80 2v9t_B SLIT homolog 2 protein 99.4 2E-12 6.8E-17 95.8 12.0 135 34-171 14-162 (220)
81 4glp_A Monocyte differentiatio 99.4 6.6E-13 2.3E-17 103.1 9.8 83 31-113 91-181 (310)
82 1ziw_A TOLL-like receptor 3; i 99.4 2.2E-12 7.6E-17 109.7 13.8 43 70-113 473-516 (680)
83 1o6v_A Internalin A; bacterial 99.4 3.3E-12 1.1E-16 104.4 14.3 42 129-172 341-386 (466)
84 3j0a_A TOLL-like receptor 5; m 99.4 1.5E-12 5.1E-17 113.7 12.8 117 30-146 23-152 (844)
85 2o6s_A Variable lymphocyte rec 99.4 6.9E-12 2.4E-16 91.7 14.3 135 34-172 10-159 (208)
86 2z7x_B TOLL-like receptor 1, v 99.4 7.8E-13 2.7E-17 109.2 10.1 137 31-172 21-176 (520)
87 3bz5_A Internalin-J, INLJ; leu 99.4 4.8E-12 1.6E-16 103.5 14.5 137 27-171 81-243 (457)
88 2z81_A CD282 antigen, TOLL-lik 99.4 1.9E-12 6.4E-17 107.5 12.1 143 35-181 9-167 (549)
89 1o6v_A Internalin A; bacterial 99.4 4.7E-12 1.6E-16 103.5 14.3 143 27-176 217-367 (466)
90 3oja_A Leucine-rich immune mol 99.4 5.3E-13 1.8E-17 109.9 8.4 146 27-173 76-249 (487)
91 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.7E-12 5.9E-17 108.3 11.3 144 28-172 350-508 (562)
92 2v70_A SLIT-2, SLIT homolog 2 99.4 3.4E-12 1.2E-16 94.5 11.5 135 34-172 14-164 (220)
93 2je0_A Acidic leucine-rich nuc 99.4 6.5E-13 2.2E-17 92.3 6.9 86 30-117 16-104 (149)
94 4b8c_D Glucose-repressible alc 99.4 2.7E-13 9.2E-18 116.7 5.9 108 25-134 218-331 (727)
95 4b8c_D Glucose-repressible alc 99.4 4.8E-13 1.7E-17 115.1 7.3 112 41-154 211-329 (727)
96 3o53_A Protein LRIM1, AGAP0063 99.4 8E-13 2.8E-17 102.9 7.7 144 27-172 76-248 (317)
97 2ell_A Acidic leucine-rich nuc 99.4 1.8E-12 6.2E-17 91.8 8.6 105 22-127 40-150 (168)
98 4g8a_A TOLL-like receptor 4; l 99.4 3.5E-12 1.2E-16 107.1 11.7 131 25-157 70-217 (635)
99 1a9n_A U2A', U2A'; complex (nu 99.4 9.9E-13 3.4E-17 94.0 7.2 126 28-172 16-151 (176)
100 1xeu_A Internalin C; cellular 99.4 6.7E-13 2.3E-17 101.0 6.6 136 30-172 18-161 (263)
101 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 3.9E-12 1.3E-16 106.2 11.6 135 32-172 32-180 (562)
102 2wfh_A SLIT homolog 2 protein 99.4 1.4E-11 4.7E-16 89.5 12.6 109 34-146 13-130 (193)
103 3j0a_A TOLL-like receptor 5; m 99.4 7.5E-12 2.6E-16 109.2 13.0 148 25-172 42-215 (844)
104 2ast_B S-phase kinase-associat 99.4 2.8E-13 9.5E-18 105.9 3.5 145 27-171 114-282 (336)
105 3cvr_A Invasion plasmid antige 99.4 6.1E-12 2.1E-16 105.4 11.8 129 31-172 80-241 (571)
106 3oja_A Leucine-rich immune mol 99.3 9.7E-13 3.3E-17 108.4 6.6 139 29-169 118-270 (487)
107 1dce_A Protein (RAB geranylger 99.3 5.1E-12 1.8E-16 105.9 10.4 116 33-167 443-566 (567)
108 1w8a_A SLIT protein; signaling 99.3 1.6E-11 5.4E-16 89.0 11.5 110 34-146 11-130 (192)
109 1jl5_A Outer protein YOPM; leu 99.3 1.8E-11 6.1E-16 100.0 12.4 131 31-171 91-225 (454)
110 3cvr_A Invasion plasmid antige 99.3 1.8E-11 6.1E-16 102.6 12.0 128 32-172 60-191 (571)
111 2je0_A Acidic leucine-rich nuc 99.3 5.4E-12 1.9E-16 87.5 7.5 104 22-126 33-142 (149)
112 2ast_B S-phase kinase-associat 99.3 5.9E-13 2E-17 104.0 2.4 146 29-174 91-260 (336)
113 2xot_A Amphoterin-induced prot 99.3 1.4E-11 5E-16 97.5 10.0 115 27-143 59-188 (361)
114 2wfh_A SLIT homolog 2 protein 99.3 2.8E-11 9.6E-16 87.8 10.7 95 31-127 31-129 (193)
115 3g06_A SSPH2 (leucine-rich rep 99.3 3.9E-11 1.3E-15 101.5 12.2 83 31-123 61-143 (622)
116 3g06_A SSPH2 (leucine-rich rep 99.3 5.1E-11 1.7E-15 100.8 12.6 86 29-124 79-164 (622)
117 4ay9_X Follicle-stimulating ho 99.3 1.9E-11 6.4E-16 96.5 9.4 154 25-180 48-241 (350)
118 2o6r_A Variable lymphocyte rec 99.2 1.7E-10 5.9E-15 82.2 12.8 109 34-146 10-128 (177)
119 2r9u_A Variable lymphocyte rec 99.2 6.1E-11 2.1E-15 84.7 9.8 99 34-136 15-122 (174)
120 1a9n_A U2A', U2A'; complex (nu 99.2 3.4E-11 1.2E-15 85.9 8.3 102 24-127 35-143 (176)
121 1dce_A Protein (RAB geranylger 99.2 4.7E-11 1.6E-15 100.1 9.5 124 48-176 404-547 (567)
122 1w8a_A SLIT protein; signaling 99.2 9.2E-11 3.1E-15 84.9 9.5 95 32-127 30-129 (192)
123 2r9u_A Variable lymphocyte rec 99.2 1.5E-10 5.2E-15 82.6 9.9 91 31-123 33-127 (174)
124 2o6r_A Variable lymphocyte rec 99.2 1.8E-10 6.2E-15 82.1 10.0 103 30-134 27-139 (177)
125 3g39_A Variable lymphocyte rec 99.2 2.6E-10 8.8E-15 81.0 10.2 90 34-127 12-105 (170)
126 3g39_A Variable lymphocyte rec 99.1 7.5E-10 2.6E-14 78.6 10.2 86 31-118 30-119 (170)
127 2ca6_A RAN GTPase-activating p 99.1 2.2E-11 7.4E-16 97.1 0.9 35 29-63 92-132 (386)
128 2ca6_A RAN GTPase-activating p 99.0 4.1E-11 1.4E-15 95.5 1.4 148 24-172 115-314 (386)
129 1ds9_A Outer arm dynein; leuci 99.0 1E-12 3.4E-17 95.7 -7.4 131 33-167 25-180 (198)
130 1ds9_A Outer arm dynein; leuci 99.0 2.6E-12 9E-17 93.5 -5.2 100 25-127 42-143 (198)
131 2ifg_A High affinity nerve gro 99.0 3.4E-09 1.2E-13 83.1 9.5 93 20-115 21-117 (347)
132 2ifg_A High affinity nerve gro 98.9 1.7E-08 6E-13 79.1 10.4 86 34-120 11-99 (347)
133 3goz_A Leucine-rich repeat-con 98.8 8.9E-10 3E-14 87.2 2.3 146 25-172 44-236 (362)
134 3goz_A Leucine-rich repeat-con 98.8 1.3E-09 4.4E-14 86.2 2.0 140 31-172 80-264 (362)
135 3sb4_A Hypothetical leucine ri 98.8 1.9E-08 6.4E-13 78.5 7.7 70 100-170 225-306 (329)
136 3sb4_A Hypothetical leucine ri 98.7 6.7E-08 2.3E-12 75.4 8.9 90 76-167 225-327 (329)
137 1z7x_W Ribonuclease inhibitor; 98.6 3.8E-09 1.3E-13 85.6 -0.6 32 32-63 86-123 (461)
138 1z7x_W Ribonuclease inhibitor; 98.5 5.2E-09 1.8E-13 84.9 -1.3 146 24-172 220-409 (461)
139 2p1m_B Transport inhibitor res 98.5 5.4E-09 1.9E-13 87.3 -1.7 82 29-111 128-221 (594)
140 3ogk_B Coronatine-insensitive 98.5 5.5E-08 1.9E-12 81.2 3.4 12 75-86 218-229 (592)
141 3ogk_B Coronatine-insensitive 98.4 1.1E-07 3.6E-12 79.5 3.7 101 26-127 187-296 (592)
142 2p1m_B Transport inhibitor res 98.4 1.4E-08 4.9E-13 84.7 -1.6 85 27-112 101-195 (594)
143 3e4g_A ATP synthase subunit S, 98.3 3.4E-07 1.2E-11 65.2 2.3 84 32-115 62-154 (176)
144 3un9_A NLR family member X1; l 98.1 1.3E-07 4.5E-12 75.2 -2.7 140 31-172 72-250 (372)
145 4fdw_A Leucine rich hypothetic 98.1 3.8E-05 1.3E-09 61.6 11.6 141 26-171 175-355 (401)
146 3rw6_A Nuclear RNA export fact 97.9 1.1E-05 3.9E-10 61.1 5.2 62 50-114 167-233 (267)
147 4fdw_A Leucine rich hypothetic 97.8 0.00017 5.9E-09 57.8 10.9 74 33-110 159-235 (401)
148 3un9_A NLR family member X1; l 97.7 2.7E-06 9.4E-11 67.6 -1.0 125 31-157 101-255 (372)
149 3e4g_A ATP synthase subunit S, 97.7 2.4E-05 8.1E-10 55.6 3.5 58 53-111 61-124 (176)
150 2ra8_A Uncharacterized protein 97.5 0.00013 4.3E-09 57.8 5.0 143 27-172 135-318 (362)
151 1io0_A Tropomodulin; LRR prote 97.3 0.00012 4E-09 52.3 3.0 89 25-115 30-137 (185)
152 1io0_A Tropomodulin; LRR prote 97.3 8.9E-05 3E-09 52.9 1.8 88 25-114 59-164 (185)
153 3rw6_A Nuclear RNA export fact 97.2 0.00035 1.2E-08 52.9 4.3 33 30-62 169-205 (267)
154 2ra8_A Uncharacterized protein 96.6 0.0005 1.7E-08 54.3 1.0 130 23-154 164-320 (362)
155 4h09_A Hypothetical leucine ri 96.4 0.03 1E-06 43.9 10.0 96 27-127 213-313 (379)
156 4h09_A Hypothetical leucine ri 96.3 0.047 1.6E-06 42.8 11.0 78 28-109 237-318 (379)
157 4fs7_A Uncharacterized protein 96.2 0.036 1.2E-06 43.8 9.8 57 26-85 66-125 (394)
158 4fs7_A Uncharacterized protein 96.0 0.015 5E-07 46.1 6.5 90 27-124 272-366 (394)
159 4gt6_A Cell surface protein; l 95.8 0.042 1.4E-06 43.4 8.4 96 26-127 260-360 (394)
160 3rfe_A Platelet glycoprotein I 95.7 0.032 1.1E-06 37.2 6.4 52 34-88 11-66 (130)
161 4gt6_A Cell surface protein; l 95.6 0.099 3.4E-06 41.2 9.7 99 43-146 253-361 (394)
162 3rfe_A Platelet glycoprotein I 95.2 0.021 7.1E-07 38.1 4.0 34 31-64 31-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 88.1 0.45 1.6E-05 34.0 3.6 83 27-111 37-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 82.8 0.75 2.6E-05 32.9 2.6 65 50-115 38-112 (197)
165 2lz0_A Uncharacterized protein 75.1 5.5 0.00019 24.9 4.6 44 41-86 6-52 (100)
166 2lz0_A Uncharacterized protein 51.6 35 0.0012 21.0 5.0 37 25-62 14-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=8.2e-20 Score=143.46 Aligned_cols=158 Identities=24% Similarity=0.299 Sum_probs=88.7
Q ss_pred cchhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCC--
Q 037904 23 CSRLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSS-- 99 (189)
Q Consensus 23 ~~~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~-- 99 (189)
.+..+.++++|++|++++|.++.+| .+..+++|++|++++| .+..+|..+.++++|++|++++|+..+.+|..++.
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 3333455666777777776666666 6666666777777664 34466666666666666666666555555554432
Q ss_pred -------CCCCcEEEccCccCCCCChhchhccCCC-----CCCCCC------------------------ccccccCccc
Q 037904 100 -------RDELLEIHLEGTAIRGLPASIELLFGNA-----APNLKN------------------------VPETLGNVES 143 (189)
Q Consensus 100 -------l~~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~------------------------lp~~~~~l~~ 143 (189)
+++|+.|++++|.+..+|..++.++.|+ .+.+.. +|..+..+++
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 5555555555555555555555554444 334444 4444555555
Q ss_pred ccc--ccCCcCccccC---cccccccceeccCCcchhhcccccc
Q 037904 144 LEV--RLSCHKRAKMQ---NDFDCVEQIAKKDSDSWKKNVDEGI 182 (189)
Q Consensus 144 L~~--l~~~~~l~~~~---~~l~~L~~L~l~~~~~l~~~~~~~~ 182 (189)
|+. +.+|+..+.+| ..+++|++|++++|..+.. +|+++
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-iP~~l 297 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR-LPSLI 297 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC-CCGGG
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh-ccHHH
Confidence 555 44555555555 4455556666666553332 44443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1e-19 Score=142.91 Aligned_cols=150 Identities=15% Similarity=0.248 Sum_probs=122.2
Q ss_pred cCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904 29 EADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH 107 (189)
Q Consensus 29 ~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~ 107 (189)
....++.|++++|+++.+| .+..+++|++|++++| .+..+|..++++++|++|++++| .+..+|..++.+++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEE
Confidence 3578999999999999999 8999999999999995 46699999999999999999995 5668999999999999999
Q ss_pred ccCcc-CCCCChhchh---------ccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---cccccccceec
Q 037904 108 LEGTA-IRGLPASIEL---------LFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAK 168 (189)
Q Consensus 108 l~~~~-~~~lp~~~~~---------L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l 168 (189)
+++|. +..+|..+.. ++.|+ .+.++.+|.++..+++|+. ....+.+..+| ..+++|++|++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 99965 4567876544 77776 6788899998999988888 44445666676 56778888888
Q ss_pred cCCcchhhccccc
Q 037904 169 KDSDSWKKNVDEG 181 (189)
Q Consensus 169 ~~~~~l~~~~~~~ 181 (189)
++|..... +|..
T Consensus 237 s~n~~~~~-~p~~ 248 (328)
T 4fcg_A 237 RGCTALRN-YPPI 248 (328)
T ss_dssp TTCTTCCB-CCCC
T ss_pred cCCcchhh-hHHH
Confidence 88764333 5543
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.67 E-value=7.6e-16 Score=133.17 Aligned_cols=160 Identities=13% Similarity=0.155 Sum_probs=100.3
Q ss_pred chhhhcCCCCcEEEccCCCcc-CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccc-----
Q 037904 24 SRLWEEADTLWEVLSDGTDIK-EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEK----- 96 (189)
Q Consensus 24 ~~~~~~l~~L~~L~l~~~~l~-~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~----- 96 (189)
+..+..+++|++|++++|.++ .+| .+..+++|++|++++|...+.+|..+.++++|+.|++++|.....+|..
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 344555566666666666555 334 5566666666666665544456666666666666666665433333322
Q ss_pred -----------------------------------------------------------------cCCCCCCcEEEccCc
Q 037904 97 -----------------------------------------------------------------TSSRDELLEIHLEGT 111 (189)
Q Consensus 97 -----------------------------------------------------------------~~~l~~L~~l~l~~~ 111 (189)
++.+++|+.|++++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 223455667777777
Q ss_pred cCC-CCChhchhccCCC-----CCCCC-CccccccCcccccc--ccCCcCccccC---cccccccceeccCCcchhhccc
Q 037904 112 AIR-GLPASIELLFGNA-----APNLK-NVPETLGNVESLEV--RLSCHKRAKMQ---NDFDCVEQIAKKDSDSWKKNVD 179 (189)
Q Consensus 112 ~~~-~lp~~~~~L~~L~-----~~~l~-~lp~~~~~l~~L~~--l~~~~~l~~~~---~~l~~L~~L~l~~~~~l~~~~~ 179 (189)
.+. .+|..++.++.|+ .|.++ .+|.+++.+++|+. +.+++..+.+| ..++.|++|+++++. +.+.||
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~-l~g~iP 721 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN-LSGPIP 721 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE-EEEECC
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc-ccccCC
Confidence 765 4677777777776 66666 67778888888888 55555444677 667788888888876 666677
Q ss_pred ccccc
Q 037904 180 EGIKL 184 (189)
Q Consensus 180 ~~~~~ 184 (189)
+.-.|
T Consensus 722 ~~~~~ 726 (768)
T 3rgz_A 722 EMGQF 726 (768)
T ss_dssp SSSSG
T ss_pred Cchhh
Confidence 65443
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.66 E-value=1.2e-16 Score=135.67 Aligned_cols=156 Identities=15% Similarity=0.236 Sum_probs=123.2
Q ss_pred cchhhhcCCCCcEEEccCCCccC------------------CC-Ccc--CCCCCcEEeccCCcCCccCcccccCCCCCCE
Q 037904 23 CSRLWEEADTLWEVLSDGTDIKE------------------PL-SIE--LLFGLVQLTLNGCKNLEHLPRTISALKYLST 81 (189)
Q Consensus 23 ~~~~~~~l~~L~~L~l~~~~l~~------------------~p-~~~--~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 81 (189)
.+..+.++++|++|++++|.++. +| .+. ++++|++|++++|...+.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 56678899999999999999998 89 888 9999999999998888899999999999999
Q ss_pred EeccCCCCCc--cCccccCCC------CCCcEEEccCccCCCCCh--hchhccCCC-----CCCCC-CccccccCccccc
Q 037904 82 LNLSGLLKFR--EFPEKTSSR------DELLEIHLEGTAIRGLPA--SIELLFGNA-----APNLK-NVPETLGNVESLE 145 (189)
Q Consensus 82 L~l~~~~~~~--~lp~~~~~l------~~L~~l~l~~~~~~~lp~--~~~~L~~L~-----~~~l~-~lp~~~~~l~~L~ 145 (189)
|++++|..+. .+|..++.+ ++|++|++++|.+..+|. .++.++.|+ .+.+. .+| .+..+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 9999976354 588877765 889999999999888888 788888777 66677 677 677777777
Q ss_pred c-ccCCcCccccC---ccccc-ccceeccCCcchhhccccc
Q 037904 146 V-RLSCHKRAKMQ---NDFDC-VEQIAKKDSDSWKKNVDEG 181 (189)
Q Consensus 146 ~-l~~~~~l~~~~---~~l~~-L~~L~l~~~~~l~~~~~~~ 181 (189)
. ....+.+..+| ..+++ |++|+++++. +. .+|+.
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~-~lp~~ 395 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LK-YIPNI 395 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECCSSC-CS-SCCSC
T ss_pred EEECCCCccccccHhhhhhcccCcEEEccCCc-Cc-ccchh
Confidence 7 44445566666 44555 7777777665 43 25544
No 5
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=5.8e-15 Score=112.57 Aligned_cols=145 Identities=17% Similarity=0.277 Sum_probs=98.8
Q ss_pred hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCC
Q 037904 26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRD 101 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~ 101 (189)
.+.++++|++|++++|.++.+| .+..+++|++|++++| .+..+|. .+.++++|+.|++++| .+..++ ..++.++
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 133 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLT 133 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCc
Confidence 4566777777888777777776 4567777888888774 4555554 4567778888888774 444444 4567777
Q ss_pred CCcEEEccCccCCCCChh-chhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCccccC----cccccccceecc
Q 037904 102 ELLEIHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKK 169 (189)
Q Consensus 102 ~L~~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~ 169 (189)
+|++|++++|.+..+|.. +..++.|+ .+.++.+|. .+..+++|+. ....+.++.+| ..+++|+.|+++
T Consensus 134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 888888888877777654 56666666 667777765 4677777877 44445677666 446778888887
Q ss_pred CCc
Q 037904 170 DSD 172 (189)
Q Consensus 170 ~~~ 172 (189)
++.
T Consensus 214 ~N~ 216 (270)
T 2o6q_A 214 ENP 216 (270)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=3.9e-16 Score=136.26 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=126.9
Q ss_pred cchhhhcCCCCcEEEccCCCccC------------------CC-Ccc--CCCCCcEEeccCCcCCccCcccccCCCCCCE
Q 037904 23 CSRLWEEADTLWEVLSDGTDIKE------------------PL-SIE--LLFGLVQLTLNGCKNLEHLPRTISALKYLST 81 (189)
Q Consensus 23 ~~~~~~~l~~L~~L~l~~~~l~~------------------~p-~~~--~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 81 (189)
.|..+.++++|++|++++|.++. +| .++ ++++|+.|++++|.....+|..++++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56678899999999999999998 88 777 9999999999999889999999999999999
Q ss_pred EeccCCCCCc--cCccccCCC-------CCCcEEEccCccCCCCCh--hchhccCCC-----CCCCCCccccccCccccc
Q 037904 82 LNLSGLLKFR--EFPEKTSSR-------DELLEIHLEGTAIRGLPA--SIELLFGNA-----APNLKNVPETLGNVESLE 145 (189)
Q Consensus 82 L~l~~~~~~~--~lp~~~~~l-------~~L~~l~l~~~~~~~lp~--~~~~L~~L~-----~~~l~~lp~~~~~l~~L~ 145 (189)
|++++|..+. .+|..++.+ ++|+.|++++|.+..+|. .++.+++|+ .+.+..+| .++.+++|+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLT 598 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEES
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcce
Confidence 9999975354 477765554 489999999999999998 888888887 67777888 788888888
Q ss_pred c-ccCCcCccccC---ccccc-ccceeccCCcchhhcccccc
Q 037904 146 V-RLSCHKRAKMQ---NDFDC-VEQIAKKDSDSWKKNVDEGI 182 (189)
Q Consensus 146 ~-l~~~~~l~~~~---~~l~~-L~~L~l~~~~~l~~~~~~~~ 182 (189)
. ....+.+..+| ..+++ |+.|+++++. +. .+|+.+
T Consensus 599 ~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~-~lp~~~ 638 (876)
T 4ecn_A 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LK-YIPNIF 638 (876)
T ss_dssp EEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CC-SCCSCC
T ss_pred EEECcCCccccchHHHhhccccCCEEECcCCC-CC-cCchhh
Confidence 8 44445566777 55666 8888888876 44 366543
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=3.7e-15 Score=114.31 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=90.9
Q ss_pred hhhcCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccccCCCCC
Q 037904 26 LWEEADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEKTSSRDE 102 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 102 (189)
.+..+++|++|++++|.++++ | .+..+++|++|++++|..++.+ |..+..+++|++|++++|......|..+..+++
T Consensus 51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence 355667777777777777766 4 6777777777777775545555 455667777777777775333333455666777
Q ss_pred CcEEEccCccCCCCChh-chhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCcccc-C---cccccccceeccC
Q 037904 103 LLEIHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKM-Q---NDFDCVEQIAKKD 170 (189)
Q Consensus 103 L~~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~-~---~~l~~L~~L~l~~ 170 (189)
|++|++++|.+..++.. +..+++|+ .+.++.+|. .+..+++|+. ....+.+..+ | ..+++|+.|++++
T Consensus 131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 77777777777666543 55555555 556666655 3566666666 3333344444 2 4455666666666
Q ss_pred Cc
Q 037904 171 SD 172 (189)
Q Consensus 171 ~~ 172 (189)
+.
T Consensus 211 n~ 212 (285)
T 1ozn_A 211 NN 212 (285)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=7.4e-16 Score=120.09 Aligned_cols=99 Identities=22% Similarity=0.213 Sum_probs=43.8
Q ss_pred hhhhcCCCCcEEEccC-CCcc-CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCC
Q 037904 25 RLWEEADTLWEVLSDG-TDIK-EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRD 101 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~-~~l~-~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 101 (189)
..+.++++|++|++++ |++. .+| .+.++++|++|++++|.....+|..+.++++|++|++++|.....+|..++.++
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 3444455555555553 4443 234 444455555555544332224444444444444444444322223444444444
Q ss_pred CCcEEEccCccCC-CCChhchhc
Q 037904 102 ELLEIHLEGTAIR-GLPASIELL 123 (189)
Q Consensus 102 ~L~~l~l~~~~~~-~lp~~~~~L 123 (189)
+|++|++++|.+. .+|..+..+
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCC
T ss_pred CCCeEECcCCcccCcCCHHHhhh
Confidence 4444444444443 334443333
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.64 E-value=3.9e-15 Score=128.73 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=107.3
Q ss_pred CcchhhhcCCCCcEEEccCCCccC-CC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCC
Q 037904 22 NCSRLWEEADTLWEVLSDGTDIKE-PL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSS 99 (189)
Q Consensus 22 ~~~~~~~~l~~L~~L~l~~~~l~~-~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 99 (189)
..+..+..+++|++|++++|.+++ +| .+.++++|++|++++|.....+|.+++++++|+.|++++|.....+|..++.
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 344455666777777777777764 45 6777777777777776655567777777777777777776555567777777
Q ss_pred CCCCcEEEccCccCC-CCChhchh--------------------------------------------------------
Q 037904 100 RDELLEIHLEGTAIR-GLPASIEL-------------------------------------------------------- 122 (189)
Q Consensus 100 l~~L~~l~l~~~~~~-~lp~~~~~-------------------------------------------------------- 122 (189)
+++|+.|++++|.+. .+|..+..
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 777777777777654 44543322
Q ss_pred --------------ccCCC-----CCCCC-CccccccCcccccc--ccCCcCccccC---cccccccceeccCCcchhhc
Q 037904 123 --------------LFGNA-----APNLK-NVPETLGNVESLEV--RLSCHKRAKMQ---NDFDCVEQIAKKDSDSWKKN 177 (189)
Q Consensus 123 --------------L~~L~-----~~~l~-~lp~~~~~l~~L~~--l~~~~~l~~~~---~~l~~L~~L~l~~~~~l~~~ 177 (189)
++.|+ .+.++ .+|.+++.++.|+. +.++...+.+| +.+++|+.|+++++. +.+.
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~-l~g~ 695 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK-LDGR 695 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CEEC
T ss_pred cceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc-ccCc
Confidence 12222 44454 56777888888888 55544444777 677888888888877 6666
Q ss_pred cccccc
Q 037904 178 VDEGIK 183 (189)
Q Consensus 178 ~~~~~~ 183 (189)
+|+.+.
T Consensus 696 ip~~l~ 701 (768)
T 3rgz_A 696 IPQAMS 701 (768)
T ss_dssp CCGGGG
T ss_pred CChHHh
Confidence 776543
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=8.9e-15 Score=110.40 Aligned_cols=140 Identities=18% Similarity=0.251 Sum_probs=111.8
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEI 106 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l 106 (189)
+.++.|++++|+++.++ .+.++++|++|++++|. +..++ ..+.++++|+.|++++| .+..+| ..+..+++|++|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEE
Confidence 57899999999999886 78899999999999954 55554 45788999999999995 555555 567888999999
Q ss_pred EccCccCCCCChh-chhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904 107 HLEGTAIRGLPAS-IELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD 172 (189)
Q Consensus 107 ~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~ 172 (189)
++++|.+..+|.. +..++.|+ .+.++.+|. .+..+++|+. ....+.+..++ ..+++|+.|+++++.
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 9999999888765 57777776 788888887 5888999998 55556777776 567889999988754
No 11
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=1.1e-14 Score=111.28 Aligned_cols=144 Identities=19% Similarity=0.279 Sum_probs=110.0
Q ss_pred hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCCc
Q 037904 27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDELL 104 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~ 104 (189)
+..+++|++|++++|.++.++.+..+++|++|++++| .++.++. .+.++++|++|++++| .+..++ ..++.+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCC
Confidence 5678889999999998888777788889999999985 4555554 4688899999999985 455555 4478888999
Q ss_pred EEEccCccCCCCChh-chhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904 105 EIHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD 172 (189)
Q Consensus 105 ~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~ 172 (189)
+|++++|.+..++.. +..++.|+ .+.++.+|.. +..+++|+. ....+.+..++ ..+++|++|+++++.
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 999999988887654 56777776 6778887764 678888888 44445666666 567888888887753
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=6.6e-16 Score=131.01 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=113.3
Q ss_pred cCCC-CccCCCCCcEEeccCCcCCcc------------------Cccccc--CCCCCCEEeccCCCCCccCccccCCCCC
Q 037904 44 KEPL-SIELLFGLVQLTLNGCKNLEH------------------LPRTIS--ALKYLSTLNLSGLLKFREFPEKTSSRDE 102 (189)
Q Consensus 44 ~~~p-~~~~l~~L~~L~l~~~~~l~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 102 (189)
+++| .++++++|++|++++|. +.. +|..++ ++++|++|++++|.....+|..++.+++
T Consensus 196 ~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 196 TFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp EEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred ccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 3477 78899999999999966 555 999988 9999999999998888889999999999
Q ss_pred CcEEEccCcc-CCC--CChhchhc------cCCC-----CCCCCCccc--cccCcccccc-ccCCcCcc-ccC--ccccc
Q 037904 103 LLEIHLEGTA-IRG--LPASIELL------FGNA-----APNLKNVPE--TLGNVESLEV-RLSCHKRA-KMQ--NDFDC 162 (189)
Q Consensus 103 L~~l~l~~~~-~~~--lp~~~~~L------~~L~-----~~~l~~lp~--~~~~l~~L~~-l~~~~~l~-~~~--~~l~~ 162 (189)
|++|++++|. +.. +|..++.+ ++|+ .+.++.+|. .++.+++|+. ....+.+. .+| +.+++
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~ 354 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCC
Confidence 9999999998 874 88888776 7777 788889998 8999999999 44445566 888 67789
Q ss_pred ccceeccCCcchhhcccccc
Q 037904 163 VEQIAKKDSDSWKKNVDEGI 182 (189)
Q Consensus 163 L~~L~l~~~~~l~~~~~~~~ 182 (189)
|++|+++++. +. .+|+.+
T Consensus 355 L~~L~L~~N~-l~-~lp~~l 372 (636)
T 4eco_A 355 LASLNLAYNQ-IT-EIPANF 372 (636)
T ss_dssp ESEEECCSSE-EE-ECCTTS
T ss_pred CCEEECCCCc-cc-cccHhh
Confidence 9999999986 44 366543
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.62 E-value=1.2e-14 Score=111.57 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=120.6
Q ss_pred chhhhcCCCCcEEEccCCC-ccCC-C-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCC
Q 037904 24 SRLWEEADTLWEVLSDGTD-IKEP-L-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSS 99 (189)
Q Consensus 24 ~~~~~~l~~L~~L~l~~~~-l~~~-p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~ 99 (189)
+..+..+++|++|++++|. ++.+ | .+..+++|++|++++|......|..+.++++|++|++++| .+..++. .++.
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 151 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRD 151 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhcc
Confidence 3457788999999999997 8888 4 8899999999999996544444667889999999999995 5666654 5889
Q ss_pred CCCCcEEEccCccCCCCChh-chhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----ccccccccee
Q 037904 100 RDELLEIHLEGTAIRGLPAS-IELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIA 167 (189)
Q Consensus 100 l~~L~~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~ 167 (189)
+++|+.|++++|.+..+|.. +..++.|+ .+.+..+ |..+..+++|+. ....+.+..++ ..+++|+.|+
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 99999999999999988764 77777777 6778777 667889999999 44556777777 6788999999
Q ss_pred ccCCc
Q 037904 168 KKDSD 172 (189)
Q Consensus 168 l~~~~ 172 (189)
++++.
T Consensus 232 l~~N~ 236 (285)
T 1ozn_A 232 LNDNP 236 (285)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 98864
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=1.3e-14 Score=117.92 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=80.8
Q ss_pred hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCC
Q 037904 26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRD 101 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~ 101 (189)
.+.++++|++|++++|+++.+| .+..+++|+.|++++| .+..++. .+.++++|+.|++++|+.+..++. .+..++
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 3455666666666666666665 4566666666666663 3444433 455666666666666555555543 455666
Q ss_pred CCcEEEccCccCCCCChhchhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----cccccccceeccC
Q 037904 102 ELLEIHLEGTAIRGLPASIELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKD 170 (189)
Q Consensus 102 ~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~ 170 (189)
+|+.|++++|.+..+|. +..+++|+ .+.++.+ |..+..+++|+. ....+.+..++ ..+++|+.|++++
T Consensus 186 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp SCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred ccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 66666666666666653 44444444 4555555 334555666665 33334454443 3455566666655
Q ss_pred Cc
Q 037904 171 SD 172 (189)
Q Consensus 171 ~~ 172 (189)
+.
T Consensus 265 N~ 266 (440)
T 3zyj_A 265 NN 266 (440)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 15
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=3.4e-15 Score=108.79 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=117.7
Q ss_pred hcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904 28 EEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH 107 (189)
Q Consensus 28 ~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~ 107 (189)
..+++|++|++++|+++.+|.+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+++|+.|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 567899999999999998888888999999999997 555555 688999999999999654444788899999999999
Q ss_pred ccCccCCC-CChhchhccCCC-----CCC-CCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904 108 LEGTAIRG-LPASIELLFGNA-----APN-LKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD 172 (189)
Q Consensus 108 l~~~~~~~-lp~~~~~L~~L~-----~~~-l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~ 172 (189)
+++|.+.. .|..+..++.|+ .+. ++.+| .+..+++|+. ....+.+..++ ..+++|++|++++..
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcc
Confidence 99999985 567788888777 555 88887 5888999999 55556788776 788999999998865
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=8.9e-15 Score=112.87 Aligned_cols=144 Identities=19% Similarity=0.179 Sum_probs=95.7
Q ss_pred hhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCCC
Q 037904 25 RLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDEL 103 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L 103 (189)
..+..+++|++|++++|.++.++....+++|++|++++ +.+..+|..+..+++|++|++++| .+..+| ..+..+++|
T Consensus 49 ~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGEL 126 (290)
T ss_dssp GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTC
T ss_pred HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCC
Confidence 34566677777777777777666336667777777777 456677776777777777777774 455554 456777777
Q ss_pred cEEEccCccCCCCChh-chhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC---cccccccceeccC
Q 037904 104 LEIHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKKD 170 (189)
Q Consensus 104 ~~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~~ 170 (189)
+.|++++|.+..+|.. +..++.|+ .+.++.+|.. +..+++|+. ....+.++.+| ....+|+.+++.+
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 7777777777776554 45555555 6677777764 456777777 44556677777 3345677777765
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=1.9e-14 Score=111.04 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=119.9
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL 108 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l 108 (189)
++++.|++++|.++.++ .+..+++|+.|++++| .++.++.. ..+++|+.|++++ +.+..+|..+..+++|+.|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCC-CcCCcCchhhccCCCCCEEEC
Confidence 57899999999998885 7899999999999994 57777664 7899999999999 577889988889999999999
Q ss_pred cCccCCCCCh-hchhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC----cccccccceeccCCcchhh
Q 037904 109 EGTAIRGLPA-SIELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSDSWKK 176 (189)
Q Consensus 109 ~~~~~~~lp~-~~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~~l~~ 176 (189)
++|.+..+|. .+..++.|+ .+.++.+|.. +..+++|+. ....+.++.+| ..+++|++|+++++. +..
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ 186 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYT 186 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCC
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCc
Confidence 9999998864 577777777 7888888874 678889998 55667888888 457889999998876 443
Q ss_pred cccccc
Q 037904 177 NVDEGI 182 (189)
Q Consensus 177 ~~~~~~ 182 (189)
+|+++
T Consensus 187 -ip~~~ 191 (290)
T 1p9a_G 187 -IPKGF 191 (290)
T ss_dssp -CCTTT
T ss_pred -cChhh
Confidence 55543
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=4.4e-15 Score=114.97 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=73.6
Q ss_pred cCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcc--cccCCCCCCEEeccCCCCCccCccccCCCCCCcE
Q 037904 29 EADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPR--TISALKYLSTLNLSGLLKFREFPEKTSSRDELLE 105 (189)
Q Consensus 29 ~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 105 (189)
.+++|++|++++|.++.+| .+..+++|++|++++| .+..++. .+.++++|+.|++++|......+..+..+++|+.
T Consensus 76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred cccccCEEECCCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 3444555555555444444 4555555555555553 2333332 4555566666666654333333444555566666
Q ss_pred EEccCccCCC--CChhchhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904 106 IHLEGTAIRG--LPASIELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD 172 (189)
Q Consensus 106 l~l~~~~~~~--lp~~~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~ 172 (189)
|++++|.+.. +|..+..++.|+ .+.++.+ |..+..+++|+. ....+.+..++ ..+++|+.|+++++.
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 6666665543 455555555554 4555555 334556666666 33334444444 345566666666654
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.59 E-value=2.6e-14 Score=116.50 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=79.5
Q ss_pred hhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCC
Q 037904 27 WEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDE 102 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 102 (189)
+.++++|++|++++|.++.+| .+.++++|++|++++| .+..+|. .+.++++|+.|++++|+.+..++. .+..+++
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 444555555555555555554 3555555556665553 2334332 445555566666655555555543 3556666
Q ss_pred CcEEEccCccCCCCChhchhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----cccccccceeccCC
Q 037904 103 LLEIHLEGTAIRGLPASIELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDS 171 (189)
Q Consensus 103 L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~ 171 (189)
|+.|++++|.+..+|. +..+++|+ .+.++.+ |..+..+++|+. ....+.+..++ ..+++|+.|+++++
T Consensus 198 L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 198 LKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp CCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 6777776666666543 44444444 5556555 335666666666 33334455443 44566667776665
Q ss_pred c
Q 037904 172 D 172 (189)
Q Consensus 172 ~ 172 (189)
.
T Consensus 277 ~ 277 (452)
T 3zyi_A 277 N 277 (452)
T ss_dssp C
T ss_pred c
Confidence 3
No 20
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=3.1e-14 Score=108.71 Aligned_cols=146 Identities=19% Similarity=0.335 Sum_probs=119.9
Q ss_pred hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcE
Q 037904 27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLE 105 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~ 105 (189)
...+++|++|++++|.++.++.+..+++|++|++++| .+..++ .+.++++|++|++++| .+..++ ..++.+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 4567899999999999998888889999999999995 466665 6889999999999996 555555 45789999999
Q ss_pred EEccCccCCCCChh-chhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC----cccccccceeccCCcc
Q 037904 106 IHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSDS 173 (189)
Q Consensus 106 l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~~ 173 (189)
|++++|.+..++.. ++.++.|+ .+.++.+|.. +..+++|+. ....+.+..++ ..+++|++|+++++.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~- 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ- 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-
Confidence 99999999988764 67777777 7788888764 688999999 44456777777 567899999999986
Q ss_pred hhh
Q 037904 174 WKK 176 (189)
Q Consensus 174 l~~ 176 (189)
+.+
T Consensus 193 l~~ 195 (272)
T 3rfs_A 193 LKS 195 (272)
T ss_dssp CSC
T ss_pred CCc
Confidence 555
No 21
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=6.3e-15 Score=110.34 Aligned_cols=139 Identities=8% Similarity=0.096 Sum_probs=68.0
Q ss_pred CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904 32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH 107 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~ 107 (189)
++++|++++|+++.+| .+.++++|++|++++|..++.++. .+.++++|++|++++|+.++.+| ..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 4555666666555554 455555666666655433444443 45555566666665533444444 3445555555555
Q ss_pred ccCccCCCCChhchhccCCC--------CC-CCCCccc-cccCccccc-c-ccCCcCccccC-c--ccccccceeccCC
Q 037904 108 LEGTAIRGLPASIELLFGNA--------AP-NLKNVPE-TLGNVESLE-V-RLSCHKRAKMQ-N--DFDCVEQIAKKDS 171 (189)
Q Consensus 108 l~~~~~~~lp~~~~~L~~L~--------~~-~l~~lp~-~~~~l~~L~-~-l~~~~~l~~~~-~--~l~~L~~L~l~~~ 171 (189)
+++|.+..+|. +..++.|+ .+ .++.+|. .+..+++|+ . ....+.++.+| . ..++|+.|+++++
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 55555555544 33333332 33 4444443 244455555 4 22223344444 1 1134555555544
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.59 E-value=4.1e-15 Score=115.88 Aligned_cols=157 Identities=12% Similarity=0.128 Sum_probs=109.6
Q ss_pred CcchhhhcCCCCcEEEccCCCcc-CCC-CccCCCCCcEEeccCCcCCccCcccccCCC-CCCEEeccCCCCCccCccccC
Q 037904 22 NCSRLWEEADTLWEVLSDGTDIK-EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALK-YLSTLNLSGLLKFREFPEKTS 98 (189)
Q Consensus 22 ~~~~~~~~l~~L~~L~l~~~~l~-~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~ 98 (189)
..+..+.++++|++|++++|.++ .+| .+..+++|++|++++|.....+|..+.+++ +|+.|++++|.....+|..+.
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 34556778889999999999888 457 888889999999988655447888888887 888998888654446777777
Q ss_pred CCCCCcEEEccCccCCC-CChhchhccCCC-----CCCCCCccccccCcccccc--ccCCcCcc-ccC---cccccccce
Q 037904 99 SRDELLEIHLEGTAIRG-LPASIELLFGNA-----APNLKNVPETLGNVESLEV--RLSCHKRA-KMQ---NDFDCVEQI 166 (189)
Q Consensus 99 ~l~~L~~l~l~~~~~~~-lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~--l~~~~~l~-~~~---~~l~~L~~L 166 (189)
.+. |+.|++++|.+.. .|..+..++.|+ .+.++..+..+..+++|+. +.+ +.+. .+| ..+++|++|
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEE
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcC-CcccCcCChHHhcCcCCCEE
Confidence 776 8888888877764 455566666666 5555554444666677776 444 3343 555 456677777
Q ss_pred eccCCcchhhccccc
Q 037904 167 AKKDSDSWKKNVDEG 181 (189)
Q Consensus 167 ~l~~~~~l~~~~~~~ 181 (189)
+++++. +.+.+|+.
T Consensus 274 ~Ls~N~-l~~~ip~~ 287 (313)
T 1ogq_A 274 NVSFNN-LCGEIPQG 287 (313)
T ss_dssp ECCSSE-EEEECCCS
T ss_pred ECcCCc-ccccCCCC
Confidence 777765 55445554
No 23
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=7.4e-14 Score=106.42 Aligned_cols=143 Identities=20% Similarity=0.279 Sum_probs=117.5
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCccc-ccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRT-ISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEI 106 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l 106 (189)
+++++|++++|+++.++ .+.++++|++|++++| .+..+|.. +.++++|++|++++| .+..+|. .+..+++|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEE
Confidence 57999999999999987 7999999999999995 56777765 578999999999995 5666664 56889999999
Q ss_pred EccCccCCCCCh-hchhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC----cccccccceeccCCcch
Q 037904 107 HLEGTAIRGLPA-SIELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSDSW 174 (189)
Q Consensus 107 ~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~~l 174 (189)
++++|.+..++. .+..+++|+ .+.++.+|.. +..+++|+. ....+.+..++ ..+++|++|+++++. +
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l 193 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-L 193 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-C
Confidence 999999998865 467777777 7888888874 788999999 44556777777 457899999999985 5
Q ss_pred hh
Q 037904 175 KK 176 (189)
Q Consensus 175 ~~ 176 (189)
..
T Consensus 194 ~~ 195 (270)
T 2o6q_A 194 KR 195 (270)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 24
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=2.8e-14 Score=108.91 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=65.5
Q ss_pred hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCcc-ccCCCC
Q 037904 26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPE-KTSSRD 101 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~ 101 (189)
.+.++++|++|++++|.++.++ .+.++++|++|++++|. +..++ ..+.++++|+.|++++| .+..++. .++.++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 124 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLK 124 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCC-CccccCchhcccCC
Confidence 3556667777777777776664 56667777777777643 33333 45666667777777664 3333332 466666
Q ss_pred CCcEEEccCccCCC--CChhchhccCCC-----CCCCCCcc
Q 037904 102 ELLEIHLEGTAIRG--LPASIELLFGNA-----APNLKNVP 135 (189)
Q Consensus 102 ~L~~l~l~~~~~~~--lp~~~~~L~~L~-----~~~l~~lp 135 (189)
+|++|++++|.+.. +|..+..+++|+ .+.++.++
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 67777777666654 456666666655 44555443
No 25
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=2.6e-14 Score=104.77 Aligned_cols=147 Identities=20% Similarity=0.240 Sum_probs=111.7
Q ss_pred CCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcE
Q 037904 30 ADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDELLE 105 (189)
Q Consensus 30 l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~ 105 (189)
.+++++|++++|+++.++ .+..+++|++|++++| .++.+|. .+.++++|++|++++| .+..+|. .++.+++|+.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCE
Confidence 457999999999999887 5789999999999995 5667765 4678999999999995 5666664 4688999999
Q ss_pred EEccCccCCCCChh-chhccCCC-----CCCCCCcccc-ccCcccccc--ccCCcCccccCcccccccceeccCCcchhh
Q 037904 106 IHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPET-LGNVESLEV--RLSCHKRAKMQNDFDCVEQIAKKDSDSWKK 176 (189)
Q Consensus 106 l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~--l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~ 176 (189)
|++++|.+..++.. +..++.|+ .+.++.+|.. +..+++|+. +.++. + .+.+++|+.|++.... +.+
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~---~~~~~~l~~L~~~~n~-~~g 179 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W---DCTCPGIRYLSEWINK-HSG 179 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-B---CCCTTTTHHHHHHHHH-CTT
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-e---ecCCCCHHHHHHHHHh-CCc
Confidence 99999999888764 57777776 6788888774 778888888 55442 1 2556677777776654 555
Q ss_pred ccccccc
Q 037904 177 NVDEGIK 183 (189)
Q Consensus 177 ~~~~~~~ 183 (189)
.+|+++.
T Consensus 180 ~ip~~~~ 186 (208)
T 2o6s_A 180 VVRNSAG 186 (208)
T ss_dssp TBBCTTS
T ss_pred eeeccCc
Confidence 5666544
No 26
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=5.5e-14 Score=109.24 Aligned_cols=140 Identities=15% Similarity=0.244 Sum_probs=81.5
Q ss_pred hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
+..+++|++|++++|.+++++.+..+++|++|++++| .++.++ .+..+++|+.|++++| .+..++. +..+++|+.|
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVL 134 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEE
T ss_pred hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEE
Confidence 4556677777777776666655566666777777664 355554 3666666777776663 4444543 5666666666
Q ss_pred EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904 107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD 172 (189)
Q Consensus 107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~ 172 (189)
++++|.+..++. +..++.|+ .+.++.++. +..+++|+. ....+.+..++ ..+++|++|+++++.
T Consensus 135 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 135 YLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ 206 (308)
T ss_dssp ECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSC
T ss_pred ECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCc
Confidence 666666665544 44555554 455555554 555555555 33334444444 445555555555553
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=6.5e-15 Score=128.61 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=113.5
Q ss_pred CC-CccCCCCCcEEeccCCcCCcc------------------Cccccc--CCCCCCEEeccCCCCCccCccccCCCCCCc
Q 037904 46 PL-SIELLFGLVQLTLNGCKNLEH------------------LPRTIS--ALKYLSTLNLSGLLKFREFPEKTSSRDELL 104 (189)
Q Consensus 46 ~p-~~~~l~~L~~L~l~~~~~l~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 104 (189)
+| .+.++++|+.|++++|. +.. +|..++ ++++|+.|++++|.....+|..++.+++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 77 88999999999999965 555 899887 999999999999888889999999999999
Q ss_pred EEEccCcc-CCC--CChhchhcc-------CCC-----CCCCCCccc--cccCcccccc-ccCCcCccccC--ccccccc
Q 037904 105 EIHLEGTA-IRG--LPASIELLF-------GNA-----APNLKNVPE--TLGNVESLEV-RLSCHKRAKMQ--NDFDCVE 164 (189)
Q Consensus 105 ~l~l~~~~-~~~--lp~~~~~L~-------~L~-----~~~l~~lp~--~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~ 164 (189)
.|++++|. +.. +|..++.++ +|+ .+.+..+|. .+..+++|+. ....+.+..+| +.+++|+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~ 598 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT 598 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEES
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcce
Confidence 99999998 774 888887776 666 788889998 8999999999 44556677888 7789999
Q ss_pred ceeccCCcchhhcccccc
Q 037904 165 QIAKKDSDSWKKNVDEGI 182 (189)
Q Consensus 165 ~L~l~~~~~l~~~~~~~~ 182 (189)
.|+++++. +. .+|+.+
T Consensus 599 ~L~Ls~N~-l~-~lp~~l 614 (876)
T 4ecn_A 599 DLKLDYNQ-IE-EIPEDF 614 (876)
T ss_dssp EEECCSSC-CS-CCCTTS
T ss_pred EEECcCCc-cc-cchHHH
Confidence 99999987 44 366543
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=3.9e-14 Score=115.03 Aligned_cols=146 Identities=20% Similarity=0.267 Sum_probs=124.0
Q ss_pred hhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCccccCCCC
Q 037904 25 RLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPEKTSSRD 101 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 101 (189)
..+..+++|++|++++|.++.+| .+..+++|+.|++++|+.+..++. .+.++++|+.|++++| .+..+|. +..++
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~ 207 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN-LTPLI 207 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC-CTTCS
T ss_pred hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc-cCCCc
Confidence 45778999999999999999987 789999999999999888888876 6889999999999995 6778874 78889
Q ss_pred CCcEEEccCccCCCC-ChhchhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCccccC----cccccccceecc
Q 037904 102 ELLEIHLEGTAIRGL-PASIELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKK 169 (189)
Q Consensus 102 ~L~~l~l~~~~~~~l-p~~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~ 169 (189)
+|+.|++++|.+..+ |..+..++.|+ .+.++.++. .+..+++|+. ....+.+..++ ..+++|+.|+++
T Consensus 208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECC
T ss_pred ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcC
Confidence 999999999999886 56788888887 778888754 6888999999 55557788887 567899999998
Q ss_pred CCc
Q 037904 170 DSD 172 (189)
Q Consensus 170 ~~~ 172 (189)
+..
T Consensus 288 ~Np 290 (440)
T 3zyj_A 288 HNP 290 (440)
T ss_dssp SSC
T ss_pred CCC
Confidence 843
No 29
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=6.7e-14 Score=108.77 Aligned_cols=140 Identities=12% Similarity=0.170 Sum_probs=116.6
Q ss_pred hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
+..+++|++|++++|.++.++.+..+++|++|++++| .+..++. +..+++|+.|++++| .+..++. ++.+++|+.|
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 156 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYL 156 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEE
T ss_pred HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEE
Confidence 7788999999999999998888888999999999995 5677765 889999999999995 5666665 7888999999
Q ss_pred EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904 107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD 172 (189)
Q Consensus 107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~ 172 (189)
++++|.+..++. +..++.|+ .+.++.++. +..+++|+. ..+.+.+..++ ..+++|+.|+++++.
T Consensus 157 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 157 SIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp ECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred EccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 999999988776 77777776 778888876 888888988 44556677766 778899999988865
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.55 E-value=1.8e-14 Score=121.04 Aligned_cols=102 Identities=12% Similarity=-0.034 Sum_probs=50.7
Q ss_pred hhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCccccCCCCCC
Q 037904 26 LWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPEKTSSRDEL 103 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 103 (189)
.+..+++|++|++++|.++.+| .+..+++|+.|++++|......| ..+.++++|+.|++++|......|..++.+++|
T Consensus 371 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450 (606)
T ss_dssp HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence 3445556666666666555555 55555566666665543322223 244555555555555543333344444445555
Q ss_pred cEEEccCccCCC--CChhchhccCCC
Q 037904 104 LEIHLEGTAIRG--LPASIELLFGNA 127 (189)
Q Consensus 104 ~~l~l~~~~~~~--lp~~~~~L~~L~ 127 (189)
+.|++++|.+.. +|..++.++.|+
T Consensus 451 ~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CEEECCCCcCCCcchHHhhccCCCCC
Confidence 555555554443 344444444443
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=4.9e-14 Score=114.84 Aligned_cols=139 Identities=16% Similarity=0.174 Sum_probs=83.7
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEI 106 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l 106 (189)
++++.|++++|+++.++ .+.++++|+.|++++|. +..+ +..+.++++|++|++++| .+..+|. .+..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEE
Confidence 45777777777777764 67777777777777754 3443 356677777777777774 4555553 46677777777
Q ss_pred EccCccCCCCCh-hchhccCCC------CCCCCCccc-cccCcccccc-ccCCcCccccC--cccccccceeccCC
Q 037904 107 HLEGTAIRGLPA-SIELLFGNA------APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDS 171 (189)
Q Consensus 107 ~l~~~~~~~lp~-~~~~L~~L~------~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~ 171 (189)
++++|.+..+|. .+..++.|+ ++.+..++. .+..+++|+. ....+.+..+| ..+++|+.|+++++
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN 228 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTS
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCC
Confidence 777777776654 345555554 344555544 3455555555 33334444444 44445555555444
No 32
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=8.9e-14 Score=107.29 Aligned_cols=140 Identities=14% Similarity=0.177 Sum_probs=92.9
Q ss_pred hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
+..+++|++|++++|++++++.+..+++|++|++++| .+..+|. +..+++|+.|++++| .+..++ .+..+++|+.|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L 139 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESL 139 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEE
T ss_pred HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEE
Confidence 4556677777777777766655666777777777764 3555544 667777777777774 455553 46667777777
Q ss_pred EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904 107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD 172 (189)
Q Consensus 107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~ 172 (189)
++++|.+..+ ..+..+++|+ .+.++.++. +..+++|+. ..+.+.+..++ ..+++|+.|+++++.
T Consensus 140 ~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 140 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred EccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 7777777666 4455666665 566777665 777777777 44445677666 667777777777654
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=1.2e-13 Score=116.37 Aligned_cols=88 Identities=19% Similarity=0.153 Sum_probs=44.8
Q ss_pred hhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCccc-ccCCCCCCEEeccCCCCCccCccccCCCCCC
Q 037904 27 WEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRT-ISALKYLSTLNLSGLLKFREFPEKTSSRDEL 103 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 103 (189)
+..+++|++|++++|.++.+| .++++++|++|++++| .+..+|.. ++++++|++|++++|......|..++.+++|
T Consensus 95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence 444555555555555555554 3455555555555553 34444443 3555555555555543222233345555555
Q ss_pred cEEEccCccCCC
Q 037904 104 LEIHLEGTAIRG 115 (189)
Q Consensus 104 ~~l~l~~~~~~~ 115 (189)
+.|++++|.+..
T Consensus 174 ~~L~L~~N~l~~ 185 (597)
T 3oja_B 174 QNLQLSSNRLTH 185 (597)
T ss_dssp CEEECTTSCCSB
T ss_pred cEEECcCCCCCC
Confidence 555555555443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.54 E-value=6.1e-14 Score=114.76 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=84.3
Q ss_pred hhhcCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCccccCCCCC
Q 037904 26 LWEEADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPEKTSSRDE 102 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 102 (189)
.+.++++|++|++++|.++.+ | .+.++++|++|++++| .+..+|. .+.++++|+.|++++|......|..+..+++
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 455666777777777776666 4 6667777777777763 4555554 3566777777777764433334455666666
Q ss_pred CcEEEccCccCCCC-ChhchhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCccccC----cccccccceeccC
Q 037904 103 LLEIHLEGTAIRGL-PASIELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKD 170 (189)
Q Consensus 103 L~~l~l~~~~~~~l-p~~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~ 170 (189)
|+.|++++|.+..+ +..+..+++|+ .+.++.+|. .+..+++|+. ....+.+..++ ..+++|+.|++++
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 77777766666554 33455555555 455655554 3555555555 22223344333 3445555555555
Q ss_pred Cc
Q 037904 171 SD 172 (189)
Q Consensus 171 ~~ 172 (189)
+.
T Consensus 210 ~~ 211 (477)
T 2id5_A 210 WP 211 (477)
T ss_dssp CT
T ss_pred Cc
Confidence 44
No 35
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=2e-13 Score=101.79 Aligned_cols=114 Identities=22% Similarity=0.276 Sum_probs=78.7
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEI 106 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l 106 (189)
++|+.|++++|+++.++ .+.++++|+.|++++| .++.+|. .+.++++|+.|++++| .+..+|. .+..+++|+.|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence 56777788777777773 6777777888888774 4566654 3567777888888774 5555554 35677777888
Q ss_pred EccCccCCCCChhchhccCCC-----CCCCCCccc-cccCcccccc
Q 037904 107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPE-TLGNVESLEV 146 (189)
Q Consensus 107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~ 146 (189)
++++|.+..+|..+..++.|+ .|.++.+|. .+..+++|+.
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 887777777777766666666 566666664 3566666666
No 36
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=1.7e-14 Score=107.91 Aligned_cols=151 Identities=9% Similarity=0.109 Sum_probs=114.3
Q ss_pred hhhcCCCCcEEEccCCC-ccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCccccCCCC
Q 037904 26 LWEEADTLWEVLSDGTD-IKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPEKTSSRD 101 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~-l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 101 (189)
.+..+++|++|++++|. ++.++ .+.++++|++|++++|+.++.++ ..+.++++|+.|++++| .+..+|. +..+.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-ccccc
Confidence 56778899999999996 88886 78899999999999855677776 46788999999999985 5677886 77777
Q ss_pred CCc---EEEccCc-cCCCCChh-chhccCCC------CCCCCCccccccCcccccc--ccCCcCccccC----ccc-ccc
Q 037904 102 ELL---EIHLEGT-AIRGLPAS-IELLFGNA------APNLKNVPETLGNVESLEV--RLSCHKRAKMQ----NDF-DCV 163 (189)
Q Consensus 102 ~L~---~l~l~~~-~~~~lp~~-~~~L~~L~------~~~l~~lp~~~~~l~~L~~--l~~~~~l~~~~----~~l-~~L 163 (189)
+|+ .+++++| .+..+|.. +..++.|+ .+.++.+|......++|+. +.++..++.++ ..+ ++|
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L 207 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence 887 9999998 88887653 56665554 6778888875444477888 55543577776 456 788
Q ss_pred cceeccCCcchhhcccc
Q 037904 164 EQIAKKDSDSWKKNVDE 180 (189)
Q Consensus 164 ~~L~l~~~~~l~~~~~~ 180 (189)
+.|+++++. +.. +|.
T Consensus 208 ~~L~l~~N~-l~~-l~~ 222 (239)
T 2xwt_C 208 SLLDVSQTS-VTA-LPS 222 (239)
T ss_dssp SEEECTTCC-CCC-CCC
T ss_pred cEEECCCCc-ccc-CCh
Confidence 999988864 444 443
No 37
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=6.4e-14 Score=106.62 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=111.4
Q ss_pred hhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcE
Q 037904 26 LWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLE 105 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 105 (189)
.+..+++|++|++++|+++.+|.+..+++|+.|++++| .+..++. +.++++|+.|++++| .+..+|.... .+|+.
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCE
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccE
Confidence 35678899999999999988887788899999999984 6777777 889999999999984 6777775433 78999
Q ss_pred EEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904 106 IHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD 172 (189)
Q Consensus 106 l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~ 172 (189)
|++++|.+..++ .+..+++|+ .+.++.++ .+..+++|+. ....+.+..++ ..+++|+.|+++++.
T Consensus 111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 111 LFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred EEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCc
Confidence 999999988875 477777776 77888886 5888888888 44446677666 678888888888764
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.54 E-value=1.8e-13 Score=109.27 Aligned_cols=88 Identities=19% Similarity=0.153 Sum_probs=45.6
Q ss_pred hhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCccc-ccCCCCCCEEeccCCCCCccCccccCCCCCC
Q 037904 27 WEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRT-ISALKYLSTLNLSGLLKFREFPEKTSSRDEL 103 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 103 (189)
+..+++|++|++++|.++.++ .+.++++|++|++++| .++.+|.. +.++++|++|++++|......|..++.+++|
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 445555555555555555553 4555555666666553 34455543 3555566666665532222223345555555
Q ss_pred cEEEccCccCCC
Q 037904 104 LEIHLEGTAIRG 115 (189)
Q Consensus 104 ~~l~l~~~~~~~ 115 (189)
+.|++++|.+..
T Consensus 168 ~~L~l~~n~l~~ 179 (390)
T 3o6n_A 168 QNLQLSSNRLTH 179 (390)
T ss_dssp CEEECCSSCCSB
T ss_pred CEEECCCCcCCc
Confidence 555555555443
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.53 E-value=1.2e-13 Score=116.05 Aligned_cols=103 Identities=19% Similarity=0.094 Sum_probs=73.1
Q ss_pred hhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCCCCC
Q 037904 25 RLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSSRDE 102 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 102 (189)
..+..+++|++|++++|.++++| .+..+++|++|++++|......|..+.++++|+.|++++|.....+|. .++.+++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 44677888999999998888888 888888899999888654333455677888888888887654445554 3667777
Q ss_pred CcEEEccCccCCCC---ChhchhccCCC
Q 037904 103 LLEIHLEGTAIRGL---PASIELLFGNA 127 (189)
Q Consensus 103 L~~l~l~~~~~~~l---p~~~~~L~~L~ 127 (189)
|+.|++++|.+..+ +..+..++.|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 379 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQ 379 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred CCEEECCCCccccccCcchhcccCCCCC
Confidence 77777777766554 44455555555
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.53 E-value=1.2e-13 Score=113.12 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=97.8
Q ss_pred chhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCC
Q 037904 24 SRLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRD 101 (189)
Q Consensus 24 ~~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 101 (189)
+..+.++++|++|++++|.++.+| .+.++++|++|++++|......|..+.++++|+.|++++|......+..+..++
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 152 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence 355778899999999999999998 578999999999999765555567788999999999999644444456788899
Q ss_pred CCcEEEccCccCCCCCh-hchhccCCC-----CCCCCCccc-cccCcccccc--ccCCc
Q 037904 102 ELLEIHLEGTAIRGLPA-SIELLFGNA-----APNLKNVPE-TLGNVESLEV--RLSCH 151 (189)
Q Consensus 102 ~L~~l~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~--l~~~~ 151 (189)
+|+.|++++|.+..++. .+..++.|+ .+.+..++. .+..+++|+. +.+|+
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 99999999999988875 366666666 555655544 4555555555 44443
No 41
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=1.3e-13 Score=106.44 Aligned_cols=140 Identities=18% Similarity=0.283 Sum_probs=117.9
Q ss_pred hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
...+++|+.|++++|.++.++.+..+++|++|++++| .+..++. +.++++|+.|++++| .+..+|. ++.+++|+.|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEE
Confidence 4567899999999999999888888999999999995 5777777 899999999999995 5666664 8999999999
Q ss_pred EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904 107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD 172 (189)
Q Consensus 107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~ 172 (189)
++++|.+..+ ..+..++.|+ .+.++.+ ..+..+++|+. ....+.+..++ ..+++|+.|+++++.
T Consensus 118 ~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 118 SLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 189 (291)
T ss_dssp ECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred ECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCc
Confidence 9999999887 4577777777 7788888 46889999999 44556777776 788999999999985
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=2e-13 Score=114.90 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=49.8
Q ss_pred chhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 037904 24 SRLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGL 87 (189)
Q Consensus 24 ~~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~ 87 (189)
+..+.++++|++|++++|.++.+| .+.++++|++|++++|......|..+.++++|+.|++++|
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 345678888999999999888887 4688889999999886544444456888888888888875
No 43
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=4.9e-13 Score=100.78 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=104.8
Q ss_pred hhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCccc-cCCC
Q 037904 25 RLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPEK-TSSR 100 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l 100 (189)
..+.++++|++|++++|.++.++ .+..+++|++|++++| .++.+| ..+..+++|+.|++++| .+..+|.. +..+
T Consensus 53 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 130 (251)
T 3m19_A 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRL 130 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccC
Confidence 45778899999999999999986 6899999999999995 466666 45789999999999995 66677654 6889
Q ss_pred CCCcEEEccCccCCCCCh-hchhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCcc
Q 037904 101 DELLEIHLEGTAIRGLPA-SIELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRA 154 (189)
Q Consensus 101 ~~L~~l~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~ 154 (189)
++|+.|++++|.+..+|. .+..++.|+ .+.++.+|. .+..+++|+. ....|.+.
T Consensus 131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 999999999999999876 577788777 788888876 6888888888 33334443
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=1.6e-13 Score=104.76 Aligned_cols=125 Identities=21% Similarity=0.177 Sum_probs=101.3
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccC-ccccCCCCCCcEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREF-PEKTSSRDELLEI 106 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~l 106 (189)
+++++|++++|+++.++ .+.++++|++|++++| .+..++ ..+.++++|++|++++|. +..+ +..+..+++|+.|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEE
Confidence 46999999999999986 7899999999999996 455555 478899999999999964 5444 4678999999999
Q ss_pred EccCccCCCCCh-hchhccCCC-----CCCCCC--ccccccCcccccc-ccCCcCccccC
Q 037904 107 HLEGTAIRGLPA-SIELLFGNA-----APNLKN--VPETLGNVESLEV-RLSCHKRAKMQ 157 (189)
Q Consensus 107 ~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~--lp~~~~~l~~L~~-l~~~~~l~~~~ 157 (189)
++++|.+..++. .++.++.|+ .+.++. +|..+..+++|+. ....+.++.++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 999999988765 577777777 677776 6788999999988 44445565554
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=1.4e-13 Score=106.47 Aligned_cols=148 Identities=15% Similarity=0.153 Sum_probs=117.8
Q ss_pred hhhhcCCCCcEEEccCCCccCCC---CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCc-cCccccCCC
Q 037904 25 RLWEEADTLWEVLSDGTDIKEPL---SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFR-EFPEKTSSR 100 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~~p---~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l 100 (189)
..+..+++|++|++++|.++.++ .+..+++|++|++++|......+..+.++++|+.|++++|.... .+|..+..+
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 174 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence 34667899999999999998875 68889999999999976555566778899999999999964333 478889999
Q ss_pred CCCcEEEccCccCCCC-ChhchhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCcccc-C---ccc-cccccee
Q 037904 101 DELLEIHLEGTAIRGL-PASIELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKM-Q---NDF-DCVEQIA 167 (189)
Q Consensus 101 ~~L~~l~l~~~~~~~l-p~~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~-~---~~l-~~L~~L~ 167 (189)
++|+.|++++|.+..+ |..+..++.|+ .+.++.++. .+..+++|+. ....+.+... + ..+ ++|++|+
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 9999999999999886 56777777777 778888876 6888999999 3344555554 3 444 5899999
Q ss_pred ccCCc
Q 037904 168 KKDSD 172 (189)
Q Consensus 168 l~~~~ 172 (189)
++++.
T Consensus 255 L~~N~ 259 (306)
T 2z66_A 255 LTQND 259 (306)
T ss_dssp CTTCC
T ss_pred ccCCC
Confidence 98864
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.50 E-value=4.5e-13 Score=104.72 Aligned_cols=94 Identities=22% Similarity=0.167 Sum_probs=56.3
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL 108 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l 108 (189)
+.++.|++++|++++++ .+.++++|++|++++|......|..+.++++|++|++++| .+..+|..+. ++|+.|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEEC
Confidence 45677777777777765 5677777777777774433333566777777777777763 4555655443 45666666
Q ss_pred cCccCCCCCh-hchhccCCC
Q 037904 109 EGTAIRGLPA-SIELLFGNA 127 (189)
Q Consensus 109 ~~~~~~~lp~-~~~~L~~L~ 127 (189)
++|.+..++. .+..++.|+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCC
T ss_pred CCCcccccCHhHhcCCcccc
Confidence 6665555443 234444444
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.50 E-value=6e-13 Score=104.02 Aligned_cols=151 Identities=14% Similarity=0.218 Sum_probs=92.4
Q ss_pred hhhcCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCC
Q 037904 26 LWEEADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDE 102 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~ 102 (189)
.+..+++|++|++++|.++.+ | .+..+++|++|++++| .++.+|..+. ++|+.|++++| .+..++ ..+..+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~ 146 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQ 146 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTT
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEECCCC-cccccCHhHhcCCcc
Confidence 467788899999999988887 5 8888889999999884 4666665443 45666666553 233332 23444455
Q ss_pred CcEEEccCccCCC---CChhchhccCCC--------------------------CCCCCCc-cccccCcccccc-ccCCc
Q 037904 103 LLEIHLEGTAIRG---LPASIELLFGNA--------------------------APNLKNV-PETLGNVESLEV-RLSCH 151 (189)
Q Consensus 103 L~~l~l~~~~~~~---lp~~~~~L~~L~--------------------------~~~l~~l-p~~~~~l~~L~~-l~~~~ 151 (189)
|+.|++++|.+.. .+..+..++.|+ .+.++.+ |..+..+++|+. ....+
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 5555555544431 223333333333 4455555 345777777877 44445
Q ss_pred CccccC----cccccccceeccCCcchhhcccccc
Q 037904 152 KRAKMQ----NDFDCVEQIAKKDSDSWKKNVDEGI 182 (189)
Q Consensus 152 ~l~~~~----~~l~~L~~L~l~~~~~l~~~~~~~~ 182 (189)
.+..++ ..+++|+.|+++++. +.. +|+++
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~-lp~~l 259 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNK-LVK-VPGGL 259 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSC-CSS-CCTTT
T ss_pred cCceeChhhccCCCCCCEEECCCCc-Ccc-CChhh
Confidence 566555 556788888888875 443 55544
No 48
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=5e-13 Score=99.04 Aligned_cols=115 Identities=20% Similarity=0.244 Sum_probs=72.2
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccc-cCCCCCCcEEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEK-TSSRDELLEIH 107 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~l~ 107 (189)
+++++|++++|+++.++ .+..+++|+.|++++|......|..+.++++|+.|++++ +.+..+|.. +..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEE
Confidence 45777777777777765 566777777777777443333355677777777777777 355556543 46677777777
Q ss_pred ccCccCCCC-ChhchhccCCC-----CCCCCCccc-cccCcccccc
Q 037904 108 LEGTAIRGL-PASIELLFGNA-----APNLKNVPE-TLGNVESLEV 146 (189)
Q Consensus 108 l~~~~~~~l-p~~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~ 146 (189)
+++|.+..+ |..+..++.|+ .|.++.++. .+..+++|+.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence 777777665 33455555554 555665554 3555555555
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.50 E-value=3e-13 Score=110.56 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=79.3
Q ss_pred hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
+..+++|++|++++|.++++|.+..+++|++|++++| .++.+| ++.+++|++|++++| .+..+| ++.+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEE
Confidence 4556677777777777776666666777777777764 355554 666677777777764 344453 5666677777
Q ss_pred EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc--ccCCcCccccC-cccccccceeccCC
Q 037904 107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV--RLSCHKRAKMQ-NDFDCVEQIAKKDS 171 (189)
Q Consensus 107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~--l~~~~~l~~~~-~~l~~L~~L~l~~~ 171 (189)
++++|.+..+| ++.++.|+ .+.++.++ ++.+++|+. +.+|..++.++ ..+++|+.|+++++
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence 77777666654 45555554 45555543 444555555 44443444444 44444555554444
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.50 E-value=3.7e-14 Score=111.92 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=62.6
Q ss_pred CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccc-cCCCCCCcEEE
Q 037904 32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEK-TSSRDELLEIH 107 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~l~ 107 (189)
+|++|++++|+++++| .+.++++|++|++++| .++.+ |..+.++++|++|++++| .+..+|.. ++.+++|++|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence 5666666666666654 4666666666666664 33333 344666666666666663 44445543 55666666666
Q ss_pred ccCccCCCCCh--hchhccCCC-----CC-CCCCcc-ccccCcccccc
Q 037904 108 LEGTAIRGLPA--SIELLFGNA-----AP-NLKNVP-ETLGNVESLEV 146 (189)
Q Consensus 108 l~~~~~~~lp~--~~~~L~~L~-----~~-~l~~lp-~~~~~l~~L~~ 146 (189)
+++|.+..+|. .+..+++|+ .+ .+..++ ..+..+++|+.
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 66666666554 445555555 22 344443 23444555544
No 51
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.50 E-value=5.5e-13 Score=104.70 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=27.7
Q ss_pred hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccC
Q 037904 27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSG 86 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~ 86 (189)
+..+++|++|++++|.+++++.+..+++|++|++++| .++.++ .+.++++|++|++++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNE 119 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTT
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcC
Confidence 3445555555555555555443444455555555543 333333 244444444444444
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=108.78 Aligned_cols=145 Identities=19% Similarity=0.205 Sum_probs=117.2
Q ss_pred hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCccc-ccCCCCCCEEeccCCCCCccCcc--ccCCC
Q 037904 26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRT-ISALKYLSTLNLSGLLKFREFPE--KTSSR 100 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~--~~~~l 100 (189)
.+.++++|++|++++|.+++++ .+.++++|++|++++| .++.+|.. +.++++|++|++++| .+..+|. .+..+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l 148 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHL 148 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTC
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccC
Confidence 4678899999999999999885 7999999999999995 56777765 789999999999994 6777876 68889
Q ss_pred CCCcEEEccCc-cCCCCC-hhchhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----ccccccccee
Q 037904 101 DELLEIHLEGT-AIRGLP-ASIELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIA 167 (189)
Q Consensus 101 ~~L~~l~l~~~-~~~~lp-~~~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~ 167 (189)
++|++|++++| .+..++ ..+..++.|+ .+.+..+ |..+..+++|+. ....+.++.+| ..+++|+.|+
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEE
Confidence 99999999998 466664 4566666665 6677766 667889999999 44446677777 4578999999
Q ss_pred ccCCc
Q 037904 168 KKDSD 172 (189)
Q Consensus 168 l~~~~ 172 (189)
++++.
T Consensus 229 L~~n~ 233 (353)
T 2z80_A 229 LRDTD 233 (353)
T ss_dssp EESCB
T ss_pred CCCCc
Confidence 99886
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.50 E-value=1.7e-13 Score=115.04 Aligned_cols=114 Identities=20% Similarity=0.153 Sum_probs=51.0
Q ss_pred CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904 32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL 108 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l 108 (189)
.+++|++++|++++++ .+.++++|++|++++|. +..+ |..+.++++|++|++++|......|..++.+++|++|++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 4455555555554443 44455555555555432 2222 334445555555555543222222444455555555555
Q ss_pred cCccCCCCC-hhchhccCCC-----CCCCC--CccccccCcccccc
Q 037904 109 EGTAIRGLP-ASIELLFGNA-----APNLK--NVPETLGNVESLEV 146 (189)
Q Consensus 109 ~~~~~~~lp-~~~~~L~~L~-----~~~l~--~lp~~~~~l~~L~~ 146 (189)
++|.+..++ ..++.+++|+ .+.+. .+|..++++++|+.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence 555444433 3344444444 33333 23444444444444
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=9.7e-14 Score=115.57 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=111.3
Q ss_pred hhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCccccCCCCC
Q 037904 25 RLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPEKTSSRDE 102 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 102 (189)
..+..+++|++|++++|.+..+| .+..+++|+.|++++|......| ..+.++++|+.|++++|......|..+..+++
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence 44566778888888888887777 77788888888888855433333 35778888999999887655556777888889
Q ss_pred CcEEEccCccCC--CCChhchhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----cccccccceecc
Q 037904 103 LLEIHLEGTAIR--GLPASIELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKK 169 (189)
Q Consensus 103 L~~l~l~~~~~~--~lp~~~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~ 169 (189)
|+.|++++|.+. .+|..+..++.|+ .+.++.+ |.++..+++|+. ....+.+..++ ..+++|+.|+++
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence 999999998876 4787777777777 6677776 667888888988 44445677666 567888999998
Q ss_pred CCc
Q 037904 170 DSD 172 (189)
Q Consensus 170 ~~~ 172 (189)
++.
T Consensus 527 ~N~ 529 (570)
T 2z63_A 527 TNP 529 (570)
T ss_dssp SSC
T ss_pred CCc
Confidence 865
No 55
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.49 E-value=1.9e-13 Score=109.14 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=51.4
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccC-ccccCCCCCCcEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREF-PEKTSSRDELLEI 106 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~l 106 (189)
.+++.++++++.++.+| .+..+++|++|++++|. +..++ ..+.++++|++|++++|. +..+ |..++.+++|++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEE
Confidence 44555555555555554 23445555555555432 33332 244455555555555532 2222 2334455555555
Q ss_pred EccCccCCCCChh-chhccCCC-----CCCCCCccc-cccCcccccc
Q 037904 107 HLEGTAIRGLPAS-IELLFGNA-----APNLKNVPE-TLGNVESLEV 146 (189)
Q Consensus 107 ~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~ 146 (189)
++++|.+..+|.. +..+++|+ .+.++.++. .+..+++|+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCE
Confidence 5555555544443 24444443 344444432 3444444444
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.49 E-value=5.9e-13 Score=104.18 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=48.5
Q ss_pred hhhcCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCCCCC
Q 037904 26 LWEEADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSSRDE 102 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 102 (189)
.+.++++|++|++++|.++.+ | .+.++++|++|++++| .+..+|..+. ++|++|++++| .+..+|. .+..+++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~ 148 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRN 148 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSS
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCcc
Confidence 456677777777777777766 4 6677777777777763 4555554443 45555555553 3333332 3444555
Q ss_pred CcEEEccCccC
Q 037904 103 LLEIHLEGTAI 113 (189)
Q Consensus 103 L~~l~l~~~~~ 113 (189)
|+.|++++|.+
T Consensus 149 L~~L~l~~n~l 159 (332)
T 2ft3_A 149 MNCIEMGGNPL 159 (332)
T ss_dssp CCEEECCSCCC
T ss_pred CCEEECCCCcc
Confidence 55555554444
No 57
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=4.4e-13 Score=113.10 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=106.0
Q ss_pred hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
+..+++|+.|++++|.++.++.+..+++|+.|++++| .+..+| .+..+++|+.|++++| .+..++ .+..+++|+.|
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESL 136 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEE
T ss_pred HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCC-CCCCCc-cccCCCccCEE
Confidence 5677888888888888887766777888888888885 456665 5778888888888885 455554 57778888888
Q ss_pred EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904 107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD 172 (189)
Q Consensus 107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~ 172 (189)
++++|.+..+ ..+..++.|+ .+.+..++. +..+++|+. ....+.+..++ ..+++|+.|+++++.
T Consensus 137 ~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 137 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred ECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 8888888777 4566666666 677777766 888888888 44446677777 778888888888865
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.48 E-value=9e-14 Score=108.11 Aligned_cols=147 Identities=12% Similarity=0.045 Sum_probs=87.5
Q ss_pred hcCCCCcEEEccCCCccCCC-CccCC-----CCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCcc--Ccccc-
Q 037904 28 EEADTLWEVLSDGTDIKEPL-SIELL-----FGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFRE--FPEKT- 97 (189)
Q Consensus 28 ~~l~~L~~L~l~~~~l~~~p-~~~~l-----~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~--lp~~~- 97 (189)
..+++|++|++++|++++.| .+..+ ++|++|++++|. +..++ ..++++++|+.|++++|..... +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 55667777777777776666 55554 677777777744 34443 5667777777777777543332 23333
Q ss_pred -CCCCCCcEEEccCccCCCCCh---h-chhccCCC-----CCCCCCcc--ccccCcccccc-ccCCcCccccC-cccccc
Q 037904 98 -SSRDELLEIHLEGTAIRGLPA---S-IELLFGNA-----APNLKNVP--ETLGNVESLEV-RLSCHKRAKMQ-NDFDCV 163 (189)
Q Consensus 98 -~~l~~L~~l~l~~~~~~~lp~---~-~~~L~~L~-----~~~l~~lp--~~~~~l~~L~~-l~~~~~l~~~~-~~l~~L 163 (189)
+.+++|+.|++++|.+..++. . +..++.|+ .+.++..+ ..+..+++|+. ....+.++.+| ...++|
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L 276 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL 276 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEE
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCc
Confidence 666777777777777764332 2 23334444 56666544 23555667777 44445666777 223577
Q ss_pred cceeccCCcchhh
Q 037904 164 EQIAKKDSDSWKK 176 (189)
Q Consensus 164 ~~L~l~~~~~l~~ 176 (189)
++|+++++. +.+
T Consensus 277 ~~L~Ls~N~-l~~ 288 (312)
T 1wwl_A 277 SVLDLSYNR-LDR 288 (312)
T ss_dssp EEEECCSSC-CCS
T ss_pred eEEECCCCC-CCC
Confidence 777777764 444
No 59
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=2.4e-13 Score=98.95 Aligned_cols=127 Identities=14% Similarity=0.069 Sum_probs=102.9
Q ss_pred hhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcE
Q 037904 26 LWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLE 105 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 105 (189)
.+..+++|++|++++|.++.++.+..+++|++|++++|......+..+..+++|+.|++++|......|..++.+++|+.
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 36788999999999998877777888999999999996554457788999999999999996544457788999999999
Q ss_pred EEccCcc-CCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCcc
Q 037904 106 IHLEGTA-IRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRA 154 (189)
Q Consensus 106 l~l~~~~-~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~ 154 (189)
|++++|. +..+| .+..++.|+ .+.++.++ .+..+++|+. ....+.++
T Consensus 141 L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 141 IDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 9999998 88887 577888777 77888887 6888888988 44445544
No 60
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.48 E-value=7.1e-13 Score=107.61 Aligned_cols=103 Identities=12% Similarity=0.100 Sum_probs=61.8
Q ss_pred cccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCccCCCC-ChhchhccCCC-----CCCCCCc-cccccCcc
Q 037904 70 PRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGL-PASIELLFGNA-----APNLKNV-PETLGNVE 142 (189)
Q Consensus 70 p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~l-p~~~~~L~~L~-----~~~l~~l-p~~~~~l~ 142 (189)
|..+.++++|+.|++++|......|..++.+++|+.|++++|.+..+ |..++.++.|+ .+.++.+ |.++..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 44455666666666666433333345566666667777766666655 34455555555 5566665 44667777
Q ss_pred cccc-ccCCcCccccC----cccccccceeccCCc
Q 037904 143 SLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD 172 (189)
Q Consensus 143 ~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~ 172 (189)
+|+. ....+.++.+| ..+++|++|+++++.
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 7777 44445666666 456677777777654
No 61
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.6e-13 Score=97.25 Aligned_cols=125 Identities=17% Similarity=0.190 Sum_probs=92.9
Q ss_pred CCCCcEEEccCCCcc--CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 30 ADTLWEVLSDGTDIK--EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 30 l~~L~~L~l~~~~l~--~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
.+++++|++++|+++ .+| .+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..++.+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 468999999999998 788 78899999999999965 6666 678899999999999965434477777778999999
Q ss_pred EccCccCCCCChhchhccCCCCCCCCCccccccCcccccc-ccCCcCccccC-------cccccccceeccCCc
Q 037904 107 HLEGTAIRGLPASIELLFGNAAPNLKNVPETLGNVESLEV-RLSCHKRAKMQ-------NDFDCVEQIAKKDSD 172 (189)
Q Consensus 107 ~l~~~~~~~lp~~~~~L~~L~~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~-------~~l~~L~~L~l~~~~ 172 (189)
++++|.+..+|. +..+..+++|+. ....+.+..+| ..+++|++|++++|.
T Consensus 101 ~Ls~N~l~~~~~----------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 101 NLSGNKLKDIST----------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ECBSSSCCSSGG----------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred eccCCccCcchh----------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 999999887652 123455555655 23334444443 346677777777765
No 62
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=1.5e-13 Score=108.49 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=65.3
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEI 106 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l 106 (189)
+++++|++++|+++.+| .|.++++|++|++++|...+.+|. .|.+++++..+...+++.+..++ ..+..+++|+++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 46888999999888887 678888999999988766666664 46778887766555546666664 567778888888
Q ss_pred EccCccCCCCCh
Q 037904 107 HLEGTAIRGLPA 118 (189)
Q Consensus 107 ~l~~~~~~~lp~ 118 (189)
++++|.+..+|.
T Consensus 110 ~l~~n~l~~~~~ 121 (350)
T 4ay9_X 110 LISNTGIKHLPD 121 (350)
T ss_dssp EEEEECCSSCCC
T ss_pred cccccccccCCc
Confidence 888777765543
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.47 E-value=4.2e-13 Score=112.71 Aligned_cols=141 Identities=13% Similarity=0.039 Sum_probs=75.7
Q ss_pred CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEcc
Q 037904 32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLE 109 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~ 109 (189)
.+++|++++|.++.++ .+.++++|++|++++|......|..+.++++|++|++++|......|..++.+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 4566666666666653 56666666666666644333335556666666666666643333345556666666666666
Q ss_pred CccCCCC-ChhchhccCCC-----CCCCCCcc-ccccCcccccc-ccCCcCccccC----ccccccc--ceeccCCc
Q 037904 110 GTAIRGL-PASIELLFGNA-----APNLKNVP-ETLGNVESLEV-RLSCHKRAKMQ----NDFDCVE--QIAKKDSD 172 (189)
Q Consensus 110 ~~~~~~l-p~~~~~L~~L~-----~~~l~~lp-~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~--~L~l~~~~ 172 (189)
+|.+..+ +..++.+++|+ .+.+..++ ..+..+++|+. ....+.+..++ +.+++|+ .|+++++.
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 6666654 34455555554 44555442 12333555555 33334444443 3444455 44555443
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.47 E-value=9.8e-13 Score=102.93 Aligned_cols=94 Identities=22% Similarity=0.208 Sum_probs=69.7
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL 108 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l 108 (189)
++++.|++++|.++.++ .+.++++|++|++++|......|..+.++++|++|++++| .+..+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEEC
Confidence 46788888888888774 6788888888888885433333667888888888888884 5667776655 67888888
Q ss_pred cCccCCCCChh-chhccCCC
Q 037904 109 EGTAIRGLPAS-IELLFGNA 127 (189)
Q Consensus 109 ~~~~~~~lp~~-~~~L~~L~ 127 (189)
++|.+..+|.. +..+++|+
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCC
T ss_pred CCCccCccCHhHhCCCccCC
Confidence 88888877653 66666666
No 65
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=1.1e-12 Score=97.66 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=108.6
Q ss_pred CcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEEEccC
Q 037904 33 LWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEIHLEG 110 (189)
Q Consensus 33 L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~ 110 (189)
-+.++.++++++.+| .+. .+|++|++++|......|..+.++++|+.|++++| .+..+|. .+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 467888888999998 554 78999999996544444667889999999999995 5677764 468889999999999
Q ss_pred ccCCCCChh-chhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904 111 TAIRGLPAS-IELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD 172 (189)
Q Consensus 111 ~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~ 172 (189)
|.+..++.. +..++.|+ .+.++.+|..+..+++|+. ....|.+..++ ..+++|+.|++.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 999888664 57777777 7888999988889999998 55557788877 557788999988754
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.46 E-value=4.5e-13 Score=111.58 Aligned_cols=124 Identities=21% Similarity=0.198 Sum_probs=70.6
Q ss_pred CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904 32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH 107 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~ 107 (189)
.++.|++++|+++.++ .+.++++|++|++++|. +..++ ..+.++++|++|++++|. +..++ ..++.+++|++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccc
Confidence 4666666666666654 56666666666666643 34443 345666666666666643 33333 4566666666666
Q ss_pred ccCccCCCCCh-hchhccCCC-----CCCCCC--ccccccCcccccc-ccCCcCccccC
Q 037904 108 LEGTAIRGLPA-SIELLFGNA-----APNLKN--VPETLGNVESLEV-RLSCHKRAKMQ 157 (189)
Q Consensus 108 l~~~~~~~lp~-~~~~L~~L~-----~~~l~~--lp~~~~~l~~L~~-l~~~~~l~~~~ 157 (189)
+++|.+..++. .++.+++|+ .+.+.. +|.+++++++|+. ....+.+..++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 66666665544 355555555 444543 4556666666666 33334444443
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.46 E-value=6.8e-14 Score=109.02 Aligned_cols=113 Identities=12% Similarity=-0.012 Sum_probs=50.7
Q ss_pred CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccc-cCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904 32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTI-SALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL 108 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l 108 (189)
+|++|++++|.++.++ .+..+++|++|++++|......+..+ ..+++|+.|++++| .+..+|.. ..+++|+.|++
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~~L~~L~L 198 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDL 198 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccccCCEEEC
Confidence 3444444444444442 44444555555555432221122222 24455555555552 33333322 22445555555
Q ss_pred cCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc
Q 037904 109 EGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV 146 (189)
Q Consensus 109 ~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~ 146 (189)
++|.+..+|..+..++.|+ .+.++.+|..+..+++|+.
T Consensus 199 s~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (317)
T ss_dssp CSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred CCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence 5555555544444444444 4455555554555555555
No 68
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.46 E-value=3.5e-13 Score=111.33 Aligned_cols=145 Identities=12% Similarity=0.148 Sum_probs=112.1
Q ss_pred hcCCCCcEEEccCCCccC-CC-CccCCCCCcEEeccCCcCCc--cCcccccCCCCCCEEeccCCCCCccCccc-cCCCCC
Q 037904 28 EEADTLWEVLSDGTDIKE-PL-SIELLFGLVQLTLNGCKNLE--HLPRTISALKYLSTLNLSGLLKFREFPEK-TSSRDE 102 (189)
Q Consensus 28 ~~l~~L~~L~l~~~~l~~-~p-~~~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~ 102 (189)
..+++|++|++++|.+++ .| .+..+++|++|++++|.... .+|..+.++++|+.|++++|.....+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 567889999999999887 46 88899999999999865332 45567889999999999996443337764 778889
Q ss_pred CcEEEccCccCC-CCChhc-hhccCCC--CCCCCCccccccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904 103 LLEIHLEGTAIR-GLPASI-ELLFGNA--APNLKNVPETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD 172 (189)
Q Consensus 103 L~~l~l~~~~~~-~lp~~~-~~L~~L~--~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~ 172 (189)
|+.|++++|.+. .+|..+ ..|+.|. .+.++.+|..+..+++|+. ....+.++.+| ..+++|++|+++++.
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 999999999885 345555 3444333 7889999998889999999 44456788888 357789999998864
No 69
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=2.4e-13 Score=105.57 Aligned_cols=145 Identities=12% Similarity=0.028 Sum_probs=97.2
Q ss_pred hcCCCCcEEEccCCCccCC----C--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCcc--Cc--ccc
Q 037904 28 EEADTLWEVLSDGTDIKEP----L--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFRE--FP--EKT 97 (189)
Q Consensus 28 ~~l~~L~~L~l~~~~l~~~----p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~--lp--~~~ 97 (189)
..+++|++|++++|.++.. + .+..+++|++|++++|......+..+.++++|++|++++|..... ++ ..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 6677888888888877753 1 334678888888888654333445677888888888888643321 22 233
Q ss_pred CCCCCCcEEEccCccCCCCChh----chhccCCC-----CCCCCCc-cccccCc---ccccc-ccCCcCccccC-ccccc
Q 037904 98 SSRDELLEIHLEGTAIRGLPAS----IELLFGNA-----APNLKNV-PETLGNV---ESLEV-RLSCHKRAKMQ-NDFDC 162 (189)
Q Consensus 98 ~~l~~L~~l~l~~~~~~~lp~~----~~~L~~L~-----~~~l~~l-p~~~~~l---~~L~~-l~~~~~l~~~~-~~l~~ 162 (189)
+.+++|++|++++|.++.++.. +..++.|+ .|.+..+ |..+..+ ++|+. ..+.+.++.+| ..+++
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~ 273 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAK 273 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSC
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCC
Confidence 5677888888888888765542 34555555 6777766 6656555 57777 44556777777 44577
Q ss_pred ccceeccCCc
Q 037904 163 VEQIAKKDSD 172 (189)
Q Consensus 163 L~~L~l~~~~ 172 (189)
|+.|+++++.
T Consensus 274 L~~L~Ls~N~ 283 (310)
T 4glp_A 274 LRVLDLSSNR 283 (310)
T ss_dssp CSCEECCSCC
T ss_pred CCEEECCCCc
Confidence 8888888775
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.45 E-value=2e-13 Score=106.08 Aligned_cols=139 Identities=18% Similarity=0.181 Sum_probs=111.1
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCcc--Ccccc--cCCCCCCEEeccCCCCCccCc----cccCCC
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEH--LPRTI--SALKYLSTLNLSGLLKFREFP----EKTSSR 100 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~--lp~~~--~~l~~L~~L~l~~~~~~~~lp----~~~~~l 100 (189)
++|++|++++|+++.++ .+..+++|++|++++|...+. +|..+ .++++|++|++++| .+..++ ..+..+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcC
Confidence 89999999999999986 899999999999999765443 34444 78999999999995 565433 234577
Q ss_pred CCCcEEEccCccCCCCC--hhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccC
Q 037904 101 DELLEIHLEGTAIRGLP--ASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKD 170 (189)
Q Consensus 101 ~~L~~l~l~~~~~~~lp--~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~ 170 (189)
++|+.|++++|.+...+ ..+..++.|+ .+.++.+|..+. ++|+. ....+.++.+| ..+++|++|++++
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKG 305 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTT
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccC
Confidence 89999999999998754 3445556665 788999998776 78888 55667888888 7789999999988
Q ss_pred Cc
Q 037904 171 SD 172 (189)
Q Consensus 171 ~~ 172 (189)
..
T Consensus 306 N~ 307 (312)
T 1wwl_A 306 NP 307 (312)
T ss_dssp CT
T ss_pred CC
Confidence 75
No 71
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=6.6e-13 Score=105.29 Aligned_cols=139 Identities=16% Similarity=0.125 Sum_probs=107.9
Q ss_pred CCCcEEEccCCCccCCC--Ccc-CCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIE-LLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPE-KTSSRDELLE 105 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~-~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~ 105 (189)
..++.|++++|+++.++ .+. ++.+|+.|++++| .+..++ ..+.++++|+.|++++| .+..++. .+..+++|+.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCE
Confidence 35889999999999987 566 8999999999995 566665 56889999999999995 5666654 6788999999
Q ss_pred EEccCccCCCC-ChhchhccCCC-----CCCCCCccccc----cCcccccc-ccCCcCccccC----ccccc--ccceec
Q 037904 106 IHLEGTAIRGL-PASIELLFGNA-----APNLKNVPETL----GNVESLEV-RLSCHKRAKMQ----NDFDC--VEQIAK 168 (189)
Q Consensus 106 l~l~~~~~~~l-p~~~~~L~~L~-----~~~l~~lp~~~----~~l~~L~~-l~~~~~l~~~~----~~l~~--L~~L~l 168 (189)
|++++|.+..+ |..+..++.|+ .+.++.+|..+ ..+++|+. ....|.+..+| ..++. ++.|++
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEEC
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEe
Confidence 99999999876 55677777777 78899998754 56888888 55567888888 34444 477888
Q ss_pred cCC
Q 037904 169 KDS 171 (189)
Q Consensus 169 ~~~ 171 (189)
.+.
T Consensus 197 ~~N 199 (361)
T 2xot_A 197 HNN 199 (361)
T ss_dssp CSS
T ss_pred cCC
Confidence 773
No 72
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.45 E-value=1.7e-12 Score=101.88 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=53.2
Q ss_pred hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
+..+++|++|++++|.++.+|.+..+++|++|++++| .+..++. +..+++|+.|++++|.....++. +..+++|+++
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L 160 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYL 160 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEE
T ss_pred hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEE
Confidence 5667777777777777777666667777777777774 3555554 56666666666666544443332 4444555555
Q ss_pred EccCccCCCC
Q 037904 107 HLEGTAIRGL 116 (189)
Q Consensus 107 ~l~~~~~~~l 116 (189)
+++++.+..+
T Consensus 161 ~l~~~~~~~~ 170 (347)
T 4fmz_A 161 TVTESKVKDV 170 (347)
T ss_dssp ECCSSCCCCC
T ss_pred EecCCCcCCc
Confidence 5554444433
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.45 E-value=4.5e-13 Score=112.48 Aligned_cols=125 Identities=21% Similarity=0.185 Sum_probs=98.4
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEI 106 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l 106 (189)
+++++|++++|+++.+| .|.++++|++|++++| .++.+|+ +|.++++|++|++++| .++.+|. .+..+++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEE
Confidence 36899999999999986 7899999999999985 5666654 6888999999999995 5777764 57889999999
Q ss_pred EccCccCCCCCh-hchhccCCC-----CCCCCC--ccccccCcccccc-ccCCcCccccC
Q 037904 107 HLEGTAIRGLPA-SIELLFGNA-----APNLKN--VPETLGNVESLEV-RLSCHKRAKMQ 157 (189)
Q Consensus 107 ~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~--lp~~~~~l~~L~~-l~~~~~l~~~~ 157 (189)
++++|.+..+|. .++++++|+ .+.++. +|..+..+++|+. ....+.++.++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 999999988875 477777777 666664 4667788888888 44445666654
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.45 E-value=1.1e-12 Score=107.10 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=66.8
Q ss_pred CCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCc
Q 037904 32 TLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGT 111 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~ 111 (189)
+|++|++++|+++++|.+.++++|++|++++| .++.+|..+ .+|++|++++| .+..+| .++.+++|+.|++++|
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC
Confidence 34444444444444444444444444444442 233333321 24444444442 333344 3555555666666655
Q ss_pred cCCCCChhchhccCCC--CCCCCCccccccCcccccc-ccCCcCccccCcccccccceeccCCc
Q 037904 112 AIRGLPASIELLFGNA--APNLKNVPETLGNVESLEV-RLSCHKRAKMQNDFDCVEQIAKKDSD 172 (189)
Q Consensus 112 ~~~~lp~~~~~L~~L~--~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~~~l~~L~~L~l~~~~ 172 (189)
.+..+|.....|+.|. .+.++.+|. ++.+++|+. ..+.+.+..+|..+++|+.|+++++.
T Consensus 206 ~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 206 SLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY 268 (454)
T ss_dssp CCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSC
T ss_pred cCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCc
Confidence 5555544333333332 455666663 666777776 33345566666555666666666654
No 75
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=2.2e-12 Score=95.57 Aligned_cols=82 Identities=9% Similarity=0.113 Sum_probs=36.2
Q ss_pred CcEEEccCCCccCCC---CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904 33 LWEVLSDGTDIKEPL---SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH 107 (189)
Q Consensus 33 L~~L~l~~~~l~~~p---~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~ 107 (189)
+++|++++|+++.++ .+..+++|+.|++++| .++.++. .+.++++|+.|++++| .+..++ ..+..+++|++|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEE
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEE
Confidence 344555555444442 2444455555555442 2333322 3444555555555543 222222 2344444555555
Q ss_pred ccCccCCCC
Q 037904 108 LEGTAIRGL 116 (189)
Q Consensus 108 l~~~~~~~l 116 (189)
+++|.+..+
T Consensus 112 Ls~N~l~~~ 120 (220)
T 2v70_A 112 LRSNRITCV 120 (220)
T ss_dssp CTTSCCCCB
T ss_pred CCCCcCCeE
Confidence 555544443
No 76
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.44 E-value=1.2e-12 Score=111.36 Aligned_cols=141 Identities=14% Similarity=0.122 Sum_probs=102.1
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEIH 107 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~ 107 (189)
+++++|++++|+++.+| .+.++++|++|++++|......|..+.++++|+.|++++| .+..+|. .++.+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 57888888888888886 6888888888888886544444566788888888888884 5666765 578888888888
Q ss_pred ccCccCCCCC-hhchhccCCC-----CCCCCCcc-ccccCcccccc-ccCCcCccccC-c-----ccccccceeccCCc
Q 037904 108 LEGTAIRGLP-ASIELLFGNA-----APNLKNVP-ETLGNVESLEV-RLSCHKRAKMQ-N-----DFDCVEQIAKKDSD 172 (189)
Q Consensus 108 l~~~~~~~lp-~~~~~L~~L~-----~~~l~~lp-~~~~~l~~L~~-l~~~~~l~~~~-~-----~l~~L~~L~l~~~~ 172 (189)
+++|.+..++ ..++.+++|+ .+.+..++ ..+..+++|+. ....+.++.++ . .+++|+.|+++++.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 8888887775 4577777776 55666554 45777888888 44445566555 1 34678888888764
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.44 E-value=5.1e-13 Score=110.88 Aligned_cols=96 Identities=14% Similarity=0.032 Sum_probs=50.2
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH 107 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~ 107 (189)
+.+++|++++|++++++ .+.++++|++|++++|......|..+.++++|++|++++| .+..++ ..++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 35566666666655552 5556666666666654322222344555666666666653 333333 2355556666666
Q ss_pred ccCccCCC--CChhchhccCCC
Q 037904 108 LEGTAIRG--LPASIELLFGNA 127 (189)
Q Consensus 108 l~~~~~~~--lp~~~~~L~~L~ 127 (189)
+++|.+.. .|..++.++.|+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCC
T ss_pred CCCCcccccchhhhhhccCCcc
Confidence 66665553 234455555554
No 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=1.2e-12 Score=110.49 Aligned_cols=140 Identities=18% Similarity=0.285 Sum_probs=117.5
Q ss_pred hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
...++.|+.|++++|.+..+|.+..+++|+.|++++| .+..++. +..+++|+.|++++| .+..+| .+..+++|+.|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 4567899999999999999888889999999999995 5677776 889999999999995 566666 68899999999
Q ss_pred EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904 107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD 172 (189)
Q Consensus 107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~ 172 (189)
++++|.+..++ .+..++.|+ .+.+..+ ..+..+++|+. ....+.+..++ ..+++|+.|++++|.
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 186 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCC
Confidence 99999998874 477777777 7788888 46889999999 44445666665 788999999999985
No 79
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.43 E-value=2.7e-12 Score=104.24 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=47.0
Q ss_pred ccccCCCCCCcEEEccCccCCCC-ChhchhccCCC-----CCCCCCcc-ccccCcccccc-ccCCcCcccc-C---cccc
Q 037904 94 PEKTSSRDELLEIHLEGTAIRGL-PASIELLFGNA-----APNLKNVP-ETLGNVESLEV-RLSCHKRAKM-Q---NDFD 161 (189)
Q Consensus 94 p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~L~~L~-----~~~l~~lp-~~~~~l~~L~~-l~~~~~l~~~-~---~~l~ 161 (189)
|..++.+++|+.|++++|.+..+ |..+..++.|+ .+.++.++ ..+..+++|+. ....+.+..+ | ..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 33455556666666666666554 33455555555 55566553 35667777777 3333455555 3 5567
Q ss_pred cccceeccCCcchhh
Q 037904 162 CVEQIAKKDSDSWKK 176 (189)
Q Consensus 162 ~L~~L~l~~~~~l~~ 176 (189)
+|++|+++++. +.+
T Consensus 372 ~L~~L~L~~N~-l~~ 385 (455)
T 3v47_A 372 NLKELALDTNQ-LKS 385 (455)
T ss_dssp TCCEEECCSSC-CSC
T ss_pred cccEEECCCCc-ccc
Confidence 77777777764 444
No 80
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=2e-12 Score=95.77 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=95.9
Q ss_pred cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCc
Q 037904 34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGT 111 (189)
Q Consensus 34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~ 111 (189)
+.++.++++++.+| .+. ..++.|++++| .+..++. .+.++++|+.|++++|......|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56778888888887 554 57888888884 4555554 6778888888888885433334677888888888888888
Q ss_pred cCCCCChh-chhccCCC-----CCCCCCcc-ccccCcccccc-ccCCcCccccC----cccccccceeccCC
Q 037904 112 AIRGLPAS-IELLFGNA-----APNLKNVP-ETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDS 171 (189)
Q Consensus 112 ~~~~lp~~-~~~L~~L~-----~~~l~~lp-~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~ 171 (189)
.+..+|.. +..++.|+ .+.++.++ ..+..+++|+. ....+.++.++ ..+++|+.|++++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 88887765 46666666 67777774 36777888888 44556677666 45677888888774
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=6.6e-13 Score=103.06 Aligned_cols=83 Identities=13% Similarity=-0.038 Sum_probs=37.4
Q ss_pred CCCcEEEccCCCccCC-C-Cc--cCCCCCcEEeccCCcCCccCc----ccccCCCCCCEEeccCCCCCccCccccCCCCC
Q 037904 31 DTLWEVLSDGTDIKEP-L-SI--ELLFGLVQLTLNGCKNLEHLP----RTISALKYLSTLNLSGLLKFREFPEKTSSRDE 102 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~-p-~~--~~l~~L~~L~l~~~~~l~~lp----~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 102 (189)
++|++|++++|.+.+. | .+ ..+++|++|++++|......+ ..+..+++|++|++++|......|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 3455555555555433 2 33 445555555555533222222 12234555555555553322222344455555
Q ss_pred CcEEEccCccC
Q 037904 103 LLEIHLEGTAI 113 (189)
Q Consensus 103 L~~l~l~~~~~ 113 (189)
|++|++++|.+
T Consensus 171 L~~L~Ls~N~l 181 (310)
T 4glp_A 171 LTSLDLSDNPG 181 (310)
T ss_dssp CCEEECCSCTT
T ss_pred CCEEECCCCCC
Confidence 55555555543
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.42 E-value=2.2e-12 Score=109.75 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=17.8
Q ss_pred cccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEEccCccC
Q 037904 70 PRTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIHLEGTAI 113 (189)
Q Consensus 70 p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~~ 113 (189)
|..+.++++|+.|++++| .+..+| ..+..+++|+.|++++|.+
T Consensus 473 p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp SCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCc
Confidence 334444444444444442 222222 2234444444444444443
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.42 E-value=3.3e-12 Score=104.37 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=19.6
Q ss_pred CCCCCccccccCcccccc--ccCCcCcccc-C-cccccccceeccCCc
Q 037904 129 PNLKNVPETLGNVESLEV--RLSCHKRAKM-Q-NDFDCVEQIAKKDSD 172 (189)
Q Consensus 129 ~~l~~lp~~~~~l~~L~~--l~~~~~l~~~-~-~~l~~L~~L~l~~~~ 172 (189)
+.+..++ .+..+++|+. +.+| .+..+ | ..+++|+.|+++++.
T Consensus 341 n~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 341 NKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp SCCCCCG-GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCCEEECCCEE
T ss_pred CccCCch-hhccCCCCCEEeCCCC-ccCccchhhcCCCCCEEeccCCc
Confidence 3444442 3445555555 3332 23332 2 555566666666554
No 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.42 E-value=1.5e-12 Score=113.70 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=75.9
Q ss_pred CCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 30 ADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 30 l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
.+++++|++++|.++.+ | .+.++++|++|++++|.....+ |..+.++++|++|++++|......|..++.+++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 45677777777777766 3 6777777777777776555555 4566777777777777754333446667777777777
Q ss_pred EccCccCCC-CChh--chhccCCC-----CCCCCCcc--ccccCcccccc
Q 037904 107 HLEGTAIRG-LPAS--IELLFGNA-----APNLKNVP--ETLGNVESLEV 146 (189)
Q Consensus 107 ~l~~~~~~~-lp~~--~~~L~~L~-----~~~l~~lp--~~~~~l~~L~~ 146 (189)
++++|.+.+ +|.. ++.+++|+ .+.+..++ ..++++++|+.
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 777777654 3443 56666666 55555542 34666777666
No 85
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=6.9e-12 Score=91.74 Aligned_cols=135 Identities=19% Similarity=0.258 Sum_probs=108.8
Q ss_pred cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEEEccC
Q 037904 34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEIHLEG 110 (189)
Q Consensus 34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~ 110 (189)
+.++.++++++++| .+ ..++++|++++| .+..++. .+.++++|+.|++++| .+..+|. .+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence 67888889999998 55 358999999995 5666665 4689999999999995 6666765 468899999999999
Q ss_pred ccCCCCChh-chhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904 111 TAIRGLPAS-IELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD 172 (189)
Q Consensus 111 ~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~ 172 (189)
|.+..+|.. +..++.|+ .+.++.+|.. +..+++|+. ....+.+..++ ..+++|+.|+++++.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 999988764 57777777 7888888874 788999999 44446777777 557899999999864
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.41 E-value=7.8e-13 Score=109.23 Aligned_cols=137 Identities=12% Similarity=0.004 Sum_probs=94.1
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL 108 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l 108 (189)
+++++|++++|.+++++ .+.++++|++|++++|......|..+.++++|++|++++| .+..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 67888888888888875 7888888888888886433333667888888888888884 66678766 7788888888
Q ss_pred cCccCCC--CChhchhccCCC-----CCCCCCccccccCcccc--cc--ccCCcC--ccccCccccccc----ceeccCC
Q 037904 109 EGTAIRG--LPASIELLFGNA-----APNLKNVPETLGNVESL--EV--RLSCHK--RAKMQNDFDCVE----QIAKKDS 171 (189)
Q Consensus 109 ~~~~~~~--lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L--~~--l~~~~~--l~~~~~~l~~L~----~L~l~~~ 171 (189)
++|.+.. +|..++.+++|+ .+.++. ..+..+++| +. +.++.. ....|..+..++ .+++.++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 8888875 467777777777 455554 345566666 66 444433 234444444433 3444444
Q ss_pred c
Q 037904 172 D 172 (189)
Q Consensus 172 ~ 172 (189)
.
T Consensus 176 ~ 176 (520)
T 2z7x_B 176 K 176 (520)
T ss_dssp S
T ss_pred c
Confidence 4
No 87
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.41 E-value=4.8e-12 Score=103.46 Aligned_cols=137 Identities=14% Similarity=0.095 Sum_probs=62.6
Q ss_pred hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCc-------------------ccccCCCCCCEEeccCC
Q 037904 27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLP-------------------RTISALKYLSTLNLSGL 87 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp-------------------~~~~~l~~L~~L~l~~~ 87 (189)
+..+++|++|++++|.++++| ++.+++|++|++++| .++.+| ..++++++|+.|++++|
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTN-KLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN 158 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSS-CCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTC
T ss_pred cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCC-cCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCC
Confidence 344455555555555555544 444445555555543 233332 01333444444444443
Q ss_pred CCCccCccccCCCCCCcEEEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC-ccc
Q 037904 88 LKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ-NDF 160 (189)
Q Consensus 88 ~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~-~~l 160 (189)
..+..+ .++.+++|+.|++++|.++.+| +..++.|+ .+.++.++ +..+++|+. ....+.+..+| ..+
T Consensus 159 ~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip~~~l 232 (457)
T 3bz5_A 159 KKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPL 232 (457)
T ss_dssp SCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred Cccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccCcccc
Confidence 333333 2444555666666666555554 33444443 34444442 444455555 33334444444 444
Q ss_pred ccccceeccCC
Q 037904 161 DCVEQIAKKDS 171 (189)
Q Consensus 161 ~~L~~L~l~~~ 171 (189)
++|+.|+++++
T Consensus 233 ~~L~~L~l~~N 243 (457)
T 3bz5_A 233 TQLTYFDCSVN 243 (457)
T ss_dssp TTCSEEECCSS
T ss_pred CCCCEEEeeCC
Confidence 55555555544
No 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.41 E-value=1.9e-12 Score=107.49 Aligned_cols=143 Identities=12% Similarity=0.077 Sum_probs=112.4
Q ss_pred EEEccCCCccCCC-CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCcc
Q 037904 35 EVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTA 112 (189)
Q Consensus 35 ~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 112 (189)
..+.++++++.+| .+. +++++|++++|. ++.+ |..+.++++|++|++++|......|..+..+++|++|++++|.
T Consensus 9 ~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGLT--AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred eEECCCCccccccccCC--CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 3567788999999 654 789999999965 5554 5679999999999999964444445789999999999999999
Q ss_pred CCCCChh-chhccCCC-----CCCCCC--ccccccCcccccc--ccCCcCccccC----cccccccceeccCCcchhhcc
Q 037904 113 IRGLPAS-IELLFGNA-----APNLKN--VPETLGNVESLEV--RLSCHKRAKMQ----NDFDCVEQIAKKDSDSWKKNV 178 (189)
Q Consensus 113 ~~~lp~~-~~~L~~L~-----~~~l~~--lp~~~~~l~~L~~--l~~~~~l~~~~----~~l~~L~~L~l~~~~~l~~~~ 178 (189)
+..++.. ++.+++|+ .+.++. +|..+..+++|+. +.++..++.+| ..+++|++|+++++. +.+.+
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 164 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQ 164 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEEC
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccC
Confidence 9988775 88888887 677875 4567899999999 76766577776 667889999998876 44434
Q ss_pred ccc
Q 037904 179 DEG 181 (189)
Q Consensus 179 ~~~ 181 (189)
|..
T Consensus 165 ~~~ 167 (549)
T 2z81_A 165 SQS 167 (549)
T ss_dssp TTT
T ss_pred hhh
Confidence 443
No 89
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.41 E-value=4.7e-12 Score=103.45 Aligned_cols=143 Identities=15% Similarity=0.224 Sum_probs=116.7
Q ss_pred hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
+..+++|++|++++|.+++++.+..+++|+.|++++| .+..++. +..+++|+.|++++| .+..++. +..+++|+.|
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L 292 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALTNL 292 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEE
T ss_pred ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeE
Confidence 5678899999999999998887788999999999995 4566665 889999999999995 5666665 7889999999
Q ss_pred EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCcchhh
Q 037904 107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSDSWKK 176 (189)
Q Consensus 107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~ 176 (189)
++++|.+..++. ++.++.|+ .+.+..++. +..+++|+. ....+.+..++ ..+++|+.|++++|. +.+
T Consensus 293 ~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~ 367 (466)
T 1o6v_A 293 ELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ-ISD 367 (466)
T ss_dssp ECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCB
T ss_pred EcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCc-cCc
Confidence 999999988765 66777776 677887765 788899998 44445677777 788999999999886 444
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=5.3e-13 Score=109.91 Aligned_cols=146 Identities=13% Similarity=-0.001 Sum_probs=90.6
Q ss_pred hhcCCCCcEEEccCCCccCCC-C-----------------ccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCC
Q 037904 27 WEEADTLWEVLSDGTDIKEPL-S-----------------IELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLL 88 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p-~-----------------~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 88 (189)
+..+++|++|++++|.++++| . ...+++|+.|++++|......|..++++++|+.|++++|.
T Consensus 76 l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence 445566666666666554433 1 1124566777777754333335566777777777777754
Q ss_pred CCccCccccC-CCCCCcEEEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---c
Q 037904 89 KFREFPEKTS-SRDELLEIHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ---N 158 (189)
Q Consensus 89 ~~~~lp~~~~-~l~~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~ 158 (189)
.....|..+. .+++|+.|++++|.+..+|.. ..++.|+ .+.++.+|..+..+++|+. ....+.+..+| .
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~ 234 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCC
T ss_pred CCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhc
Confidence 3333455554 677777777777777665432 2244444 6777777777777788877 44446677777 4
Q ss_pred ccccccceeccCCcc
Q 037904 159 DFDCVEQIAKKDSDS 173 (189)
Q Consensus 159 ~l~~L~~L~l~~~~~ 173 (189)
.+++|+.|+++++.-
T Consensus 235 ~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 235 FSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCTTCCEEECTTCCB
T ss_pred cCCCCCEEEcCCCCC
Confidence 567788888877653
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.40 E-value=1.7e-12 Score=108.33 Aligned_cols=144 Identities=11% Similarity=0.134 Sum_probs=113.1
Q ss_pred hcCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccC---cccccCCCCCCEEeccCCCCCccCcc-ccCCCC
Q 037904 28 EEADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHL---PRTISALKYLSTLNLSGLLKFREFPE-KTSSRD 101 (189)
Q Consensus 28 ~~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~ 101 (189)
..+++|++|++++|.+++. | .+.++++|++|++++| .++.+ |..+.++++|+.|++++|.....+|. .+..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 5678999999999999884 6 8899999999999995 55654 45688999999999999644343775 477889
Q ss_pred CCcEEEccCccCCC-CChhc-hhccCCC--CCCCCCccccccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904 102 ELLEIHLEGTAIRG-LPASI-ELLFGNA--APNLKNVPETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD 172 (189)
Q Consensus 102 ~L~~l~l~~~~~~~-lp~~~-~~L~~L~--~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~ 172 (189)
+|+.|++++|.+.. +|..+ ..|+.|. .+.++.+|..+..+++|+. ....+.++.+| ..+++|+.|+++++.
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred cCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 99999999998853 45555 3444443 7889999998889999999 55557788888 457889999998864
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=3.4e-12 Score=94.53 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=91.6
Q ss_pred cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccC-c-ccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEEcc
Q 037904 34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHL-P-RTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIHLE 109 (189)
Q Consensus 34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~l-p-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~ 109 (189)
+.++++++.++.+| .+. ..++.|++++| .+..+ + ..+.++++|+.|++++| .+..++ ..+..+++|+.|+++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence 57788888888877 543 34577888874 45555 3 23677888888888874 455554 367778888888888
Q ss_pred CccCCCCChh-chhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904 110 GTAIRGLPAS-IELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD 172 (189)
Q Consensus 110 ~~~~~~lp~~-~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~ 172 (189)
+|.+..++.. +..++.|+ .+.++.+ |..+..+++|+. ....+.++.++ ..+++|+.|++++..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 8888777653 66666666 6777776 446777777877 44446666663 556777778877653
No 93
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=6.5e-13 Score=92.25 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=69.5
Q ss_pred CCCCcEEEccCCCcc--CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904 30 ADTLWEVLSDGTDIK--EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI 106 (189)
Q Consensus 30 l~~L~~L~l~~~~l~--~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l 106 (189)
.++++.|++++|.++ .+| .+..+++|++|++++| .+..+ ..+.++++|+.|++++|.....+|..++.+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 357899999999988 677 7788999999999985 56666 668889999999999864333377777778899999
Q ss_pred EccCccCCCCC
Q 037904 107 HLEGTAIRGLP 117 (189)
Q Consensus 107 ~l~~~~~~~lp 117 (189)
++++|.+..++
T Consensus 94 ~ls~N~i~~~~ 104 (149)
T 2je0_A 94 NLSGNKIKDLS 104 (149)
T ss_dssp ECTTSCCCSHH
T ss_pred ECCCCcCCChH
Confidence 99998887654
No 94
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=2.7e-13 Score=116.67 Aligned_cols=108 Identities=21% Similarity=0.148 Sum_probs=73.6
Q ss_pred hhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCC
Q 037904 25 RLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDEL 103 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 103 (189)
+.+..++.|+.|++++|.+..+| .+..+.+|+.|+|++| .+..+|..++++++|+.|++++| .+..+|..++.+.+|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQL 295 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTC
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCC
Confidence 34556667777777777777777 6667777777777774 45577777777777777777774 455777777777777
Q ss_pred cEEEccCccCCCCChhchhccCCC-----CCCCCCc
Q 037904 104 LEIHLEGTAIRGLPASIELLFGNA-----APNLKNV 134 (189)
Q Consensus 104 ~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~l 134 (189)
++|+|++|.+..+|.+++.|++|+ .|.+...
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 777777777777777776666666 5666643
No 95
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=4.8e-13 Score=115.08 Aligned_cols=112 Identities=19% Similarity=0.233 Sum_probs=81.9
Q ss_pred CCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCccCCCCChh
Q 037904 41 TDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPAS 119 (189)
Q Consensus 41 ~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~~ 119 (189)
|.+...| .+..+..|+.|++++| .+..+|..+.++++|+.|++++| .+..+|..++.+++|+.|+|++|.+..+|..
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~ 288 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288 (727)
T ss_dssp -----------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSS
T ss_pred cceecChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChh
Confidence 3444345 6778888888999884 46688887888888999998884 5668888888888889999998888888888
Q ss_pred chhccCCC-----CCCCCCccccccCcccccc-ccCCcCcc
Q 037904 120 IELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRA 154 (189)
Q Consensus 120 ~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~ 154 (189)
++.|+.|+ .|.++.+|.+++.+++|+. ....|.+.
T Consensus 289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 88888877 6788888888888888888 33334444
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.38 E-value=8e-13 Score=102.93 Aligned_cols=144 Identities=14% Similarity=0.053 Sum_probs=97.8
Q ss_pred hhcCCCCcEEEccCCCccCCC-C-----------------ccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCC
Q 037904 27 WEEADTLWEVLSDGTDIKEPL-S-----------------IELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGL 87 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p-~-----------------~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~ 87 (189)
+..+++|++|++++|.+++++ . ...+++|+.|++++|. +..+ +..+..+++|+.|++++|
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS
T ss_pred hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC
Confidence 455667777777776655443 1 1224567777887754 4444 446777888888888885
Q ss_pred CCCccCcccc-CCCCCCcEEEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---
Q 037904 88 LKFREFPEKT-SSRDELLEIHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--- 157 (189)
Q Consensus 88 ~~~~~lp~~~-~~l~~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--- 157 (189)
......+..+ ..+++|++|++++|.+..++... .++.|+ .+.++.+|..+..+++|+. ....+.++.+|
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh
Confidence 4333334444 46778888888888887764432 244444 7888888888888888988 55556788888
Q ss_pred cccccccceeccCCc
Q 037904 158 NDFDCVEQIAKKDSD 172 (189)
Q Consensus 158 ~~l~~L~~L~l~~~~ 172 (189)
..+++|+.|+++++.
T Consensus 234 ~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 234 RFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCCTTCCEEECTTCC
T ss_pred hcCCCCCEEEccCCC
Confidence 567889999998876
No 97
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=1.8e-12 Score=91.78 Aligned_cols=105 Identities=21% Similarity=0.142 Sum_probs=85.4
Q ss_pred CcchhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc--cccCC
Q 037904 22 NCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP--EKTSS 99 (189)
Q Consensus 22 ~~~~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~ 99 (189)
..+..+..+++|++|++++|.++.++.+..+++|++|++++|.....+|..+.++++|+.|++++| .+..+| ..+..
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~ 118 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKK 118 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhc
Confidence 344556788999999999999988777888999999999996544447777778999999999995 677776 68899
Q ss_pred CCCCcEEEccCccCCCCCh----hchhccCCC
Q 037904 100 RDELLEIHLEGTAIRGLPA----SIELLFGNA 127 (189)
Q Consensus 100 l~~L~~l~l~~~~~~~lp~----~~~~L~~L~ 127 (189)
+++|+.|++++|.+..+|. .+..++.|+
T Consensus 119 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 119 LECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred CCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 9999999999999988776 444444444
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.37 E-value=3.5e-12 Score=107.05 Aligned_cols=131 Identities=17% Similarity=0.151 Sum_probs=102.7
Q ss_pred hhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCC
Q 037904 25 RLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSR 100 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l 100 (189)
..+.++++|++|++++|+++.+| .|.++++|++|++++| .++.+|. .|.++++|++|++++| .+..+|. .++.+
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L 147 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHL 147 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTC
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcC
Confidence 35778999999999999999996 7899999999999995 5777775 5789999999999995 5666764 58999
Q ss_pred CCCcEEEccCccCCC--CChhchhccCCC-----CCCCCCccc-cccCcccccc-----ccCCcCccccC
Q 037904 101 DELLEIHLEGTAIRG--LPASIELLFGNA-----APNLKNVPE-TLGNVESLEV-----RLSCHKRAKMQ 157 (189)
Q Consensus 101 ~~L~~l~l~~~~~~~--lp~~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-----l~~~~~l~~~~ 157 (189)
++|++|++++|.+.. +|..++.++.|+ .+.++.++. .+..+.+++. ....+.+..++
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~ 217 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 217 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccC
Confidence 999999999999875 467778888887 677877654 4555544432 23334555554
No 99
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=9.9e-13 Score=93.97 Aligned_cols=126 Identities=14% Similarity=0.127 Sum_probs=88.9
Q ss_pred hcCCCCcEEEccCCCccCCCCccCCC-CCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcccc-CCCCCCcE
Q 037904 28 EEADTLWEVLSDGTDIKEPLSIELLF-GLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKT-SSRDELLE 105 (189)
Q Consensus 28 ~~l~~L~~L~l~~~~l~~~p~~~~l~-~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~ 105 (189)
..+.+|++|++++|+++.+|.+..+. +|++|++++| .+..+ ..+..+++|+.|++++| .+..+|..+ +.+++|+.
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 45678999999999999888555554 8999999995 56666 56888999999999995 667777554 88889999
Q ss_pred EEccCccCCCCChhchhccCCCCCCCCCccccccCcccccc-ccCCcCccccC-------cccccccceeccCCc
Q 037904 106 IHLEGTAIRGLPASIELLFGNAAPNLKNVPETLGNVESLEV-RLSCHKRAKMQ-------NDFDCVEQIAKKDSD 172 (189)
Q Consensus 106 l~l~~~~~~~lp~~~~~L~~L~~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~-------~~l~~L~~L~l~~~~ 172 (189)
|++++|.+..+|.- ..+..+++|+. ....+.+..+| ..+++|+.|+++++.
T Consensus 93 L~L~~N~i~~~~~~----------------~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLVELGDL----------------DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCCCGGGG----------------GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCCcchhh----------------HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999988776550 12444455555 22333444444 345666777766654
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=6.7e-13 Score=100.96 Aligned_cols=136 Identities=13% Similarity=0.179 Sum_probs=113.6
Q ss_pred CCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEcc
Q 037904 30 ADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLE 109 (189)
Q Consensus 30 l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~ 109 (189)
+..+..+++.++.+++++.+..+++|++|++++| .++.++ .+..+++|+.|++++| .+..++. +..+++|+.|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 4467778899999988877788999999999995 678888 6889999999999995 6777877 8999999999999
Q ss_pred CccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904 110 GTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD 172 (189)
Q Consensus 110 ~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~ 172 (189)
+|.+..+|.... ..|+ .+.++.++ .+..+++|+. ..+.+.++.++ ..+++|+.|+++++.
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSC
T ss_pred CCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCc
Confidence 999988765332 4554 78888886 4889999999 55667788888 788999999999975
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.37 E-value=3.9e-12 Score=106.18 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=88.1
Q ss_pred CCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccC-ccccCCCCCCcEEEc
Q 037904 32 TLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREF-PEKTSSRDELLEIHL 108 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~l~l 108 (189)
..+.+++++++++.+| .+. +++++|++++|. +..++ ..+.++++|+.|++++| .+..+ |+.+..+++|++|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEEC
Confidence 3467777777777777 443 677778887744 44444 46777778888888775 34443 566777777888888
Q ss_pred cCccCCCCChhchhccCCC-----CCCCCCcc--ccccCcccccc-ccCCcCccccC-cccccc--cceeccCCc
Q 037904 109 EGTAIRGLPASIELLFGNA-----APNLKNVP--ETLGNVESLEV-RLSCHKRAKMQ-NDFDCV--EQIAKKDSD 172 (189)
Q Consensus 109 ~~~~~~~lp~~~~~L~~L~-----~~~l~~lp--~~~~~l~~L~~-l~~~~~l~~~~-~~l~~L--~~L~l~~~~ 172 (189)
++|.+..+|.. .+++|+ .+.++.+| ..++++++|+. ..+.+.+.... ..+++| +.|+++++.
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESS
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeeccc
Confidence 87777777665 455555 66666654 56777777777 33334555443 445555 777777664
No 102
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=1.4e-11 Score=89.47 Aligned_cols=109 Identities=21% Similarity=0.328 Sum_probs=73.2
Q ss_pred cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEEccCc
Q 037904 34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIHLEGT 111 (189)
Q Consensus 34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~ 111 (189)
+.+++++++++.+| .+. .+++.|++++ +.++.+|..+.++++|+.|++++| .+..++ ..+..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCC-CcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777777777 443 4677777777 456677777777777888887774 444444 45777777778888777
Q ss_pred cCCCCCh-hchhccCCC-----CCCCCCccc-cccCcccccc
Q 037904 112 AIRGLPA-SIELLFGNA-----APNLKNVPE-TLGNVESLEV 146 (189)
Q Consensus 112 ~~~~lp~-~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~ 146 (189)
.+..++. .+..++.|+ .|.++.+|. .+..+++|+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence 7776654 355555555 556666665 3666777776
No 103
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.36 E-value=7.5e-12 Score=109.25 Aligned_cols=148 Identities=15% Similarity=0.034 Sum_probs=111.9
Q ss_pred hhhhcCCCCcEEEccCC-CccCC-C-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccc--cCC
Q 037904 25 RLWEEADTLWEVLSDGT-DIKEP-L-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEK--TSS 99 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~-~l~~~-p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~--~~~ 99 (189)
..+.++++|++|++++| .+..+ | .+.++++|++|++++|......|.++.++++|++|++++|.....+|.. ++.
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 45678899999999998 44556 5 8999999999999997655555888999999999999997554445654 889
Q ss_pred CCCCcEEEccCccCCCC--ChhchhccCCC-----CCCCCCc-cccccCc--ccccc--ccCCcCccccC---cccc---
Q 037904 100 RDELLEIHLEGTAIRGL--PASIELLFGNA-----APNLKNV-PETLGNV--ESLEV--RLSCHKRAKMQ---NDFD--- 161 (189)
Q Consensus 100 l~~L~~l~l~~~~~~~l--p~~~~~L~~L~-----~~~l~~l-p~~~~~l--~~L~~--l~~~~~l~~~~---~~l~--- 161 (189)
+++|++|++++|.+..+ +..++.+++|+ .+.+..+ |..+..+ ++|+. +.++......| +.+.
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence 99999999999999875 35688888888 6666654 4466666 67777 55544444444 2233
Q ss_pred ---cccceeccCCc
Q 037904 162 ---CVEQIAKKDSD 172 (189)
Q Consensus 162 ---~L~~L~l~~~~ 172 (189)
.|+.|+++++.
T Consensus 202 ~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 202 RNMVLEILDVSGNG 215 (844)
T ss_dssp TTCCBSEEBCSSCC
T ss_pred ccCceeEEecCCCc
Confidence 38999999874
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=2.8e-13 Score=105.88 Aligned_cols=145 Identities=17% Similarity=0.263 Sum_probs=63.8
Q ss_pred hhcCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCcc--CcccccCCCCCCEEeccCCCCCcc--CccccCCC
Q 037904 27 WEEADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEH--LPRTISALKYLSTLNLSGLLKFRE--FPEKTSSR 100 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l 100 (189)
+..+++|++|++++|.+++. + .++.+++|++|++++|..++. ++..+.++++|+.|++++|..+.. ++..+..+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 33444555555555444422 2 444455555555555433331 333344455555555555423322 33344444
Q ss_pred C-CCcEEEccCcc--CC--CCChhchhccCCC-----CCC-CC-CccccccCcccccc--ccCCcCccccC----ccccc
Q 037904 101 D-ELLEIHLEGTA--IR--GLPASIELLFGNA-----APN-LK-NVPETLGNVESLEV--RLSCHKRAKMQ----NDFDC 162 (189)
Q Consensus 101 ~-~L~~l~l~~~~--~~--~lp~~~~~L~~L~-----~~~-l~-~lp~~~~~l~~L~~--l~~~~~l~~~~----~~l~~ 162 (189)
+ +|++|++++|. +. .+|..+..+++|+ .+. ++ ..+..+..+++|+. +.+|..+.... ..+++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 4 55555555542 21 2333333444444 222 22 23334555555555 44443332211 34555
Q ss_pred ccceeccCC
Q 037904 163 VEQIAKKDS 171 (189)
Q Consensus 163 L~~L~l~~~ 171 (189)
|+.|++++|
T Consensus 274 L~~L~l~~~ 282 (336)
T 2ast_B 274 LKTLQVFGI 282 (336)
T ss_dssp CCEEECTTS
T ss_pred CCEEeccCc
Confidence 555555555
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=6.1e-12 Score=105.39 Aligned_cols=129 Identities=18% Similarity=0.137 Sum_probs=65.3
Q ss_pred CCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC
Q 037904 31 DTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG 110 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~ 110 (189)
++|+.|++++|+++.+| ..+++|+.|++++| .++.+|. +.+ +|+.|++++| .++.+|. .+++|+.|++++
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN 149 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC
Confidence 45777777777766666 34556666666663 3444555 433 5555555552 3444444 334444444444
Q ss_pred ccCCCCChhchhc-----------------cCCC-----CCCCCCccccccCcccc-------cc-ccCCcCccccC---
Q 037904 111 TAIRGLPASIELL-----------------FGNA-----APNLKNVPETLGNVESL-------EV-RLSCHKRAKMQ--- 157 (189)
Q Consensus 111 ~~~~~lp~~~~~L-----------------~~L~-----~~~l~~lp~~~~~l~~L-------~~-l~~~~~l~~~~--- 157 (189)
|.+..+|..+..| ++|+ .|.++.+|. +.. +| +. ....|.++.+|
T Consensus 150 N~l~~lp~~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l 226 (571)
T 3cvr_A 150 NQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENI 226 (571)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGG
T ss_pred CccCcCCCcCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHH
Confidence 4444444322222 2232 455555555 332 44 55 33445566666
Q ss_pred cccccccceeccCCc
Q 037904 158 NDFDCVEQIAKKDSD 172 (189)
Q Consensus 158 ~~l~~L~~L~l~~~~ 172 (189)
..+++|+.|+++++.
T Consensus 227 ~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 227 LSLDPTCTIILEDNP 241 (571)
T ss_dssp GGSCTTEEEECCSSS
T ss_pred hcCCCCCEEEeeCCc
Confidence 345666666666654
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=9.7e-13 Score=108.37 Aligned_cols=139 Identities=13% Similarity=0.022 Sum_probs=112.0
Q ss_pred cCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccCccccc-CCCCCCEEeccCCCCCccCccccCCCCCCcE
Q 037904 29 EADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHLPRTIS-ALKYLSTLNLSGLLKFREFPEKTSSRDELLE 105 (189)
Q Consensus 29 ~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 105 (189)
.+++|+.|++++|.++.+ | .+..+++|++|++++|......|..+. .+++|+.|++++| .+..+|. ...+++|+.
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~ 195 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKT 195 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-CCCCTTCCE
T ss_pred ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccc-cccCCCCCE
Confidence 467899999999999988 4 888999999999999765555666675 7999999999995 5666654 345889999
Q ss_pred EEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCcc--ccC---cccccccceecc
Q 037904 106 IHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRA--KMQ---NDFDCVEQIAKK 169 (189)
Q Consensus 106 l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~--~~~---~~l~~L~~L~l~ 169 (189)
|++++|.+..+|+.+..++.|+ .|.+..+|..+..+++|+. ....+.+. .+| ..++.|+.+++.
T Consensus 196 L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999999999998888888887 7889999999999999998 33334454 454 566777777775
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=5.1e-12 Score=105.88 Aligned_cols=116 Identities=18% Similarity=0.202 Sum_probs=60.9
Q ss_pred CcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCcc
Q 037904 33 LWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTA 112 (189)
Q Consensus 33 L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 112 (189)
|+.|++++|+++.+|.+..+++|+.|++++| .++.+|..++++++|+.|++++ +.++.+| .++.+++|+.|++++|.
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCcc-cccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCCCC
Confidence 4555555555555554555555555555552 3445555555555555555555 2344455 45555555555555555
Q ss_pred CCCCChhchhccCCCCCCCCCccccccCcccccc-ccCCcCccccC-------ccccccccee
Q 037904 113 IRGLPASIELLFGNAAPNLKNVPETLGNVESLEV-RLSCHKRAKMQ-------NDFDCVEQIA 167 (189)
Q Consensus 113 ~~~lp~~~~~L~~L~~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~-------~~l~~L~~L~ 167 (189)
+..++ .|..++.+++|+. ....|.+..+| ..+++|+.|+
T Consensus 520 l~~~~----------------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 LQQSA----------------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSS----------------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCC----------------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 54431 0455666666666 33334455544 2255666654
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=1.6e-11 Score=88.98 Aligned_cols=110 Identities=21% Similarity=0.209 Sum_probs=71.1
Q ss_pred cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCccc--ccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC
Q 037904 34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRT--ISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG 110 (189)
Q Consensus 34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~--~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~ 110 (189)
+.+++++++++++| .+.. ++++|++++| .++.++.. +.++++|+.|++++|......|..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777777777 4443 6777777774 45555542 66777777777777433333356677777777777777
Q ss_pred ccCCCCCh-hchhccCCC-----CCCCCCc-cccccCcccccc
Q 037904 111 TAIRGLPA-SIELLFGNA-----APNLKNV-PETLGNVESLEV 146 (189)
Q Consensus 111 ~~~~~lp~-~~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~ 146 (189)
|.+..++. .+..++.|+ .+.++.+ |..+..+++|+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 77776544 355555555 5556555 446777777777
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.32 E-value=1.8e-11 Score=99.97 Aligned_cols=131 Identities=19% Similarity=0.189 Sum_probs=66.2
Q ss_pred CCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEcc
Q 037904 31 DTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLE 109 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~ 109 (189)
++|++|++++|.++++| . ..+|+.|++++| .+..+|.. .++|++|++++| .+..+| .++.+++|++|+++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECC
Confidence 45666666666666655 2 244555555553 33333321 145666666653 344455 35566666666666
Q ss_pred CccCCCCChhchhccCCC--CCCCCCccccccCcccccc-ccCCcCccccCcccccccceeccCC
Q 037904 110 GTAIRGLPASIELLFGNA--APNLKNVPETLGNVESLEV-RLSCHKRAKMQNDFDCVEQIAKKDS 171 (189)
Q Consensus 110 ~~~~~~lp~~~~~L~~L~--~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~~~l~~L~~L~l~~~ 171 (189)
+|.+..+|..+..|+.|. .+.++.+| +++.+++|+. ..+.+.+..+|..+++|++|+++++
T Consensus 162 ~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n 225 (454)
T 1jl5_A 162 NNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 225 (454)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS
T ss_pred CCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCC
Confidence 666655555444444333 45555555 3555555555 2233344444433344444444444
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.31 E-value=1.8e-11 Score=102.59 Aligned_cols=128 Identities=17% Similarity=0.183 Sum_probs=96.6
Q ss_pred CCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC
Q 037904 32 TLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG 110 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~ 110 (189)
+++.|++++|+++++| .+. ++|+.|++++| .++.+| ..+++|+.|++++| .+..+|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 8999999999999999 563 78999999995 577888 45899999999995 6777888 665 899999999
Q ss_pred ccCCCCChhchhccCCC--CCCCCCccccccCcccccc-ccCCcCccccCcccccccceeccCCc
Q 037904 111 TAIRGLPASIELLFGNA--APNLKNVPETLGNVESLEV-RLSCHKRAKMQNDFDCVEQIAKKDSD 172 (189)
Q Consensus 111 ~~~~~lp~~~~~L~~L~--~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~~~l~~L~~L~l~~~~ 172 (189)
|.+..+|..+..|+.|. .|.++.+|. .+++|+. ..+.|.+..+|...++|+.|+++++.
T Consensus 130 N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 130 NQLTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNL 191 (571)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CcCCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCC
Confidence 99999988333333333 777877776 4566666 44445566666422567777777664
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=5.4e-12 Score=87.54 Aligned_cols=104 Identities=20% Similarity=0.173 Sum_probs=84.7
Q ss_pred CcchhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc--cccCC
Q 037904 22 NCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP--EKTSS 99 (189)
Q Consensus 22 ~~~~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~ 99 (189)
..+..+..+++|++|++++|.++.++.+..+++|++|++++|.....+|..+.++++|+.|++++| .+..+| ..++.
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~ 111 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKK 111 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhh
Confidence 344556788999999999999988877888999999999996544447887778999999999995 566655 78899
Q ss_pred CCCCcEEEccCccCCCCCh----hchhccCC
Q 037904 100 RDELLEIHLEGTAIRGLPA----SIELLFGN 126 (189)
Q Consensus 100 l~~L~~l~l~~~~~~~lp~----~~~~L~~L 126 (189)
+++|++|++++|.+..+|. .+..+++|
T Consensus 112 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 112 LENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp CTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred CCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 9999999999999988765 34554444
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.30 E-value=5.9e-13 Score=104.02 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=95.9
Q ss_pred cCCCCcEEEccCCCccC--CC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCc--cCccccCCCCCC
Q 037904 29 EADTLWEVLSDGTDIKE--PL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFR--EFPEKTSSRDEL 103 (189)
Q Consensus 29 ~l~~L~~L~l~~~~l~~--~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L 103 (189)
.+++|++|++++|.++. +| .+..+++|+.|++++|......+..+..+++|+.|++++|..++ .++..+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 45677777777777654 45 66777778888887765433556667777788888888765555 256566677778
Q ss_pred cEEEccCc-cCCC--CChhchhcc-CCC-----CC--CC--CCccccccCcccccc--ccCCcCccc-cC---ccccccc
Q 037904 104 LEIHLEGT-AIRG--LPASIELLF-GNA-----AP--NL--KNVPETLGNVESLEV--RLSCHKRAK-MQ---NDFDCVE 164 (189)
Q Consensus 104 ~~l~l~~~-~~~~--lp~~~~~L~-~L~-----~~--~l--~~lp~~~~~l~~L~~--l~~~~~l~~-~~---~~l~~L~ 164 (189)
++|++++| .+.. ++..+..++ +|+ .+ .+ ..+|..+..+++|+. +.+|..+.. .+ ..+++|+
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 88888877 6664 455556666 665 33 23 345555667777777 666654442 22 5667888
Q ss_pred ceeccCCcch
Q 037904 165 QIAKKDSDSW 174 (189)
Q Consensus 165 ~L~l~~~~~l 174 (189)
+|++++|..+
T Consensus 251 ~L~l~~~~~~ 260 (336)
T 2ast_B 251 HLSLSRCYDI 260 (336)
T ss_dssp EEECTTCTTC
T ss_pred EeeCCCCCCC
Confidence 8888888643
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=1.4e-11 Score=97.54 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=92.4
Q ss_pred hh-cCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccC-ccccCCCC
Q 037904 27 WE-EADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREF-PEKTSSRD 101 (189)
Q Consensus 27 ~~-~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~ 101 (189)
+. .+++|+.|++++|+++.++ .+.++++|+.|++++| .+..++. .+.++++|+.|++++|. +..+ |..+..++
T Consensus 59 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~ 136 (361)
T 2xot_A 59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMA 136 (361)
T ss_dssp SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred hhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcc
Confidence 44 7889999999999999986 7999999999999995 4666654 68899999999999954 5544 67889999
Q ss_pred CCcEEEccCccCCCCChhc----hhccCCC-----CCCCCCccc-cccCccc
Q 037904 102 ELLEIHLEGTAIRGLPASI----ELLFGNA-----APNLKNVPE-TLGNVES 143 (189)
Q Consensus 102 ~L~~l~l~~~~~~~lp~~~----~~L~~L~-----~~~l~~lp~-~~~~l~~ 143 (189)
+|+.|++++|.+..+|..+ ..++.|+ .|.++.+|. .+..++.
T Consensus 137 ~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 188 (361)
T 2xot_A 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188 (361)
T ss_dssp TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCH
T ss_pred cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccH
Confidence 9999999999999998764 4566666 788888885 4555544
No 114
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=2.8e-11 Score=87.84 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=81.0
Q ss_pred CCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904 31 DTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH 107 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~ 107 (189)
+++++|++++|+++.+| .+.++++|+.|++++| .++.++ ..+.++++|+.|++++| .+..++ ..+..+++|+.|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence 57999999999999999 9999999999999995 466665 56899999999999995 565555 5789999999999
Q ss_pred ccCccCCCCChh-chhccCCC
Q 037904 108 LEGTAIRGLPAS-IELLFGNA 127 (189)
Q Consensus 108 l~~~~~~~lp~~-~~~L~~L~ 127 (189)
+++|.+..+|.. +..++.|+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALS 129 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCCCCCeeChhhhhcCcccc
Confidence 999999998774 67777666
No 115
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.27 E-value=3.9e-11 Score=101.48 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=45.0
Q ss_pred CCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC
Q 037904 31 DTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG 110 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~ 110 (189)
++|+.|++++|+++.+|. .+++|++|++++| .++.+|. .+++|++|++++| .+..+|. .+++|+.|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCC
Confidence 456666666666666652 3456666666663 3555555 4556666666653 4444444 234455555555
Q ss_pred ccCCCCChhchhc
Q 037904 111 TAIRGLPASIELL 123 (189)
Q Consensus 111 ~~~~~lp~~~~~L 123 (189)
|.+..+|..+.+|
T Consensus 131 N~l~~lp~~l~~L 143 (622)
T 3g06_A 131 NQLTSLPVLPPGL 143 (622)
T ss_dssp SCCSCCCCCCTTC
T ss_pred CCCCcCCCCCCCC
Confidence 5555554443333
No 116
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.27 E-value=5.1e-11 Score=100.82 Aligned_cols=86 Identities=23% Similarity=0.272 Sum_probs=59.3
Q ss_pred cCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904 29 EADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL 108 (189)
Q Consensus 29 ~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l 108 (189)
.+++|++|++++|+++.+|. .+++|+.|++++| .+..+|. .+++|+.|++++| .+..+|.. +++|++|++
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~L 148 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSV 148 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEEC
T ss_pred cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEEC
Confidence 46789999999998888873 5678888888874 5666666 4567777777773 56666654 256677777
Q ss_pred cCccCCCCChhchhcc
Q 037904 109 EGTAIRGLPASIELLF 124 (189)
Q Consensus 109 ~~~~~~~lp~~~~~L~ 124 (189)
++|.+..+|..+..|+
T Consensus 149 s~N~l~~l~~~~~~L~ 164 (622)
T 3g06_A 149 SDNQLASLPALPSELC 164 (622)
T ss_dssp CSSCCSCCCCCCTTCC
T ss_pred cCCcCCCcCCccCCCC
Confidence 7776666655444443
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.26 E-value=1.9e-11 Score=96.46 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=97.6
Q ss_pred hhhhcCCCCcEEEccCCCccC-CC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCcc-----
Q 037904 25 RLWEEADTLWEVLSDGTDIKE-PL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPE----- 95 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~-~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~----- 95 (189)
+.+.++++|++|++++|.+.+ +| .+.++.+++.+...+++.+..++ ..+.++++|++|++++| .+..+|.
T Consensus 48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~ 126 (350)
T 4ay9_X 48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIH 126 (350)
T ss_dssp TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCC
T ss_pred HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcc
Confidence 457788899999999998754 45 67788887765444446666664 45678888888888774 3433332
Q ss_pred ---------------------ccCCC-CCCcEEEccCccCCCCChhchhccCCC------CCCCCCccc-cccCcccccc
Q 037904 96 ---------------------KTSSR-DELLEIHLEGTAIRGLPASIELLFGNA------APNLKNVPE-TLGNVESLEV 146 (189)
Q Consensus 96 ---------------------~~~~l-~~L~~l~l~~~~~~~lp~~~~~L~~L~------~~~l~~lp~-~~~~l~~L~~ 146 (189)
.+..+ ..++.|++++|.++++|........|. ++.++.+|. .|..+++|+.
T Consensus 127 ~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~ 206 (350)
T 4ay9_X 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206 (350)
T ss_dssp BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSE
T ss_pred cchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccch
Confidence 11122 245566666666666655432222222 567777776 4677777777
Q ss_pred -ccCCcCccccC-cccccccceeccCCcchhhcccc
Q 037904 147 -RLSCHKRAKMQ-NDFDCVEQIAKKDSDSWKKNVDE 180 (189)
Q Consensus 147 -l~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~~~~~ 180 (189)
....+.++.+| +.+.+|+.|.+.++..++. +|.
T Consensus 207 LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~-lP~ 241 (350)
T 4ay9_X 207 LDISRTRIHSLPSYGLENLKKLRARSTYNLKK-LPT 241 (350)
T ss_dssp EECTTSCCCCCCSSSCTTCCEEECTTCTTCCC-CCC
T ss_pred hhcCCCCcCccChhhhccchHhhhccCCCcCc-CCC
Confidence 44556777777 5667777777766666555 553
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=1.7e-10 Score=82.17 Aligned_cols=109 Identities=22% Similarity=0.338 Sum_probs=58.8
Q ss_pred cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEEEccC
Q 037904 34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEIHLEG 110 (189)
Q Consensus 34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~ 110 (189)
+.+++++++++.+| .+. .+++.|++++| .++.+|. .+.++++|+.|++++| .+..+|. .+..+++|+.|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 45666666666665 332 45666666663 3444443 3455666666666663 3444443 345566666666666
Q ss_pred ccCCCCChh-chhccCCC-----CCCCCCcccc-ccCcccccc
Q 037904 111 TAIRGLPAS-IELLFGNA-----APNLKNVPET-LGNVESLEV 146 (189)
Q Consensus 111 ~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~ 146 (189)
|.+..+|.. +..++.|+ .+.++.+|.. +..+++|+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence 666555442 34444443 4445555543 456677776
No 119
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=6.1e-11 Score=84.68 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=64.7
Q ss_pred cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccc-cCCCCCCcEEEccC
Q 037904 34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEK-TSSRDELLEIHLEG 110 (189)
Q Consensus 34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~l~l~~ 110 (189)
+.+++++++++.+| .+. .+|++|++++|. +..+ |..+.++++|+.|++++| .+..+|.. +..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 56777777777777 553 677777777743 4444 456677777777777773 56666654 46777777777777
Q ss_pred ccCCCCChh-chhccCCC-----CCCCCCccc
Q 037904 111 TAIRGLPAS-IELLFGNA-----APNLKNVPE 136 (189)
Q Consensus 111 ~~~~~lp~~-~~~L~~L~-----~~~l~~lp~ 136 (189)
|.+..+|.. +..++.|+ .|.+...+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 777776654 55555555 455555444
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=3.4e-11 Score=85.91 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=83.7
Q ss_pred chhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccc-cCCCCCCEEeccCCCCCccCcc--ccCCC
Q 037904 24 SRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTI-SALKYLSTLNLSGLLKFREFPE--KTSSR 100 (189)
Q Consensus 24 ~~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~--~~~~l 100 (189)
+.+....++|++|++++|.+++++.+..+++|++|++++| .+..+|..+ ..+++|+.|++++| .+..+|. .++.+
T Consensus 35 ~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l 112 (176)
T 1a9n_A 35 ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASL 112 (176)
T ss_dssp CCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGC
T ss_pred HHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcC
Confidence 3334445599999999999998877889999999999995 577777655 89999999999995 6788887 78899
Q ss_pred CCCcEEEccCccCCCCChh----chhccCCC
Q 037904 101 DELLEIHLEGTAIRGLPAS----IELLFGNA 127 (189)
Q Consensus 101 ~~L~~l~l~~~~~~~lp~~----~~~L~~L~ 127 (189)
++|+.+++++|.+..+|.. +..++.|+
T Consensus 113 ~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 113 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp TTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred CCCCEEEecCCCCCCcHhHHHHHHHHCCccc
Confidence 9999999999999888774 55555544
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=4.7e-11 Score=100.05 Aligned_cols=124 Identities=13% Similarity=0.153 Sum_probs=92.0
Q ss_pred CccCCCCCcEEe-ccCCcCCccCcc------cccC--CCCCCEEeccCCCCCccCccccCCCCCCcEEEccCccCCCCCh
Q 037904 48 SIELLFGLVQLT-LNGCKNLEHLPR------TISA--LKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPA 118 (189)
Q Consensus 48 ~~~~l~~L~~L~-l~~~~~l~~lp~------~~~~--l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~ 118 (189)
.++.+.+|+.|+ ++. +.+..++. .+.. ...|+.|++++| .++.+|. ++.+++|+.|++++|.+..+|.
T Consensus 404 ~l~~l~~L~~L~~l~~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~ 480 (567)
T 1dce_A 404 TLQYFSTLKAVDPMRA-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPP 480 (567)
T ss_dssp HHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCG
T ss_pred HHHHHHhcccCcchhh-cccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccch
Confidence 556677787777 443 22222221 1111 125888999884 6777886 8888889999999998888888
Q ss_pred hchhccCCC-----CCCCCCccccccCcccccc-ccCCcCcccc--C---cccccccceeccCCcchhh
Q 037904 119 SIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKM--Q---NDFDCVEQIAKKDSDSWKK 176 (189)
Q Consensus 119 ~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~--~---~~l~~L~~L~l~~~~~l~~ 176 (189)
.++.+++|+ .|.++.+| +++.+++|+. ..+.|.+..+ | +.+++|+.|+++++. +.+
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~ 547 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQ 547 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGG
T ss_pred hhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCC
Confidence 888888887 78888888 7999999999 5555778777 6 778999999999987 665
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=9.2e-11 Score=84.93 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=78.2
Q ss_pred CCcEEEccCCCccCCC-C--ccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904 32 TLWEVLSDGTDIKEPL-S--IELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH 107 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p-~--~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~ 107 (189)
++++|++++|+++.++ . +..+++|++|++++|......|..+.++++|+.|++++| .+..++ ..+..+++|+.|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 7899999999999987 3 889999999999996544444778999999999999995 555554 5588899999999
Q ss_pred ccCccCCCC-ChhchhccCCC
Q 037904 108 LEGTAIRGL-PASIELLFGNA 127 (189)
Q Consensus 108 l~~~~~~~l-p~~~~~L~~L~ 127 (189)
+++|.+..+ |..+..++.|+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCC
T ss_pred CCCCcCCeeCHHHhhcCCCCC
Confidence 999999875 66677777776
No 123
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=1.5e-10 Score=82.59 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=78.0
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCccc-ccCCCCCCEEeccCCCCCccCccc-cCCCCCCcEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRT-ISALKYLSTLNLSGLLKFREFPEK-TSSRDELLEI 106 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~l 106 (189)
++|+.|++++|+++.++ .+.++++|++|++++| .++.+|.. +.++++|+.|++++ +.+..+|.. +..+++|+.|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEE
Confidence 68999999999999994 8999999999999995 67888875 57999999999999 567777765 8899999999
Q ss_pred EccCccCCCCChhchhc
Q 037904 107 HLEGTAIRGLPASIELL 123 (189)
Q Consensus 107 ~l~~~~~~~lp~~~~~L 123 (189)
++++|.+...+..+..+
T Consensus 111 ~L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 111 YLYNNPWDCECRDIMYL 127 (174)
T ss_dssp ECCSSCBCTTBGGGHHH
T ss_pred EeCCCCcccccccHHHH
Confidence 99999998776654443
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.8e-10 Score=82.09 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=82.9
Q ss_pred CCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcE
Q 037904 30 ADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDELLE 105 (189)
Q Consensus 30 l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~ 105 (189)
.+++++|++++|+++.+| .+..+++|++|++++| .++.+|. .+.++++|+.|++++| .++.+|. .++.+++|+.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCE
Confidence 368999999999999987 5789999999999995 5677765 4689999999999995 5666665 4688999999
Q ss_pred EEccCccCCCCChh-chhccCCC-----CCCCCCc
Q 037904 106 IHLEGTAIRGLPAS-IELLFGNA-----APNLKNV 134 (189)
Q Consensus 106 l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~l 134 (189)
|++++|.+..+|.. +..++.|+ .|.+..-
T Consensus 105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 99999999988775 46676666 5555543
No 125
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=2.6e-10 Score=81.02 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=48.3
Q ss_pred cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccc-cCCCCCCcEEEccC
Q 037904 34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEK-TSSRDELLEIHLEG 110 (189)
Q Consensus 34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~l~l~~ 110 (189)
+.+++++++++.+| .+. .+++.|++++| .+..+ |..+.++++|++|++++| .+..+|.. +..+++|+.|++++
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 45666666666665 432 55666666653 33333 344556666666666653 44444432 35566666666666
Q ss_pred ccCCCCChh-chhccCCC
Q 037904 111 TAIRGLPAS-IELLFGNA 127 (189)
Q Consensus 111 ~~~~~lp~~-~~~L~~L~ 127 (189)
|.+..+|.. +..++.|+
T Consensus 88 N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp SCCCCCCTTTTTTCTTCC
T ss_pred CccCEeCHHHhcCCCCCC
Confidence 666555442 44444444
No 126
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=7.5e-10 Score=78.59 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=74.0
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCccc-ccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEE
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRT-ISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEI 106 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l 106 (189)
+++++|++++|+++.++ .+.++++|++|++++| .+..+|.. +.++++|+.|++++| .+..+|. .+..+++|+.|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEE
Confidence 68999999999999995 7999999999999995 57777764 689999999999994 6777775 58899999999
Q ss_pred EccCccCCCCCh
Q 037904 107 HLEGTAIRGLPA 118 (189)
Q Consensus 107 ~l~~~~~~~lp~ 118 (189)
++++|.+...+.
T Consensus 108 ~L~~N~~~c~c~ 119 (170)
T 3g39_A 108 WLLNNPWDCACS 119 (170)
T ss_dssp ECCSSCBCTTBG
T ss_pred EeCCCCCCCCch
Confidence 999998875544
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.06 E-value=2.2e-11 Score=97.13 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=16.4
Q ss_pred cCCCCcEEEccCCCccC-----CC-CccCCCCCcEEeccCC
Q 037904 29 EADTLWEVLSDGTDIKE-----PL-SIELLFGLVQLTLNGC 63 (189)
Q Consensus 29 ~l~~L~~L~l~~~~l~~-----~p-~~~~l~~L~~L~l~~~ 63 (189)
.+++|++|++++|.++. +| .+..+++|++|++++|
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 44455555555554444 23 3444444555555443
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.03 E-value=4.1e-11 Score=95.53 Aligned_cols=148 Identities=11% Similarity=0.094 Sum_probs=109.5
Q ss_pred chhhhcCCCCcEEEccCCCccCCC------CccCC---------CCCcEEeccCCcCC-ccCc---ccccCCCCCCEEec
Q 037904 24 SRLWEEADTLWEVLSDGTDIKEPL------SIELL---------FGLVQLTLNGCKNL-EHLP---RTISALKYLSTLNL 84 (189)
Q Consensus 24 ~~~~~~l~~L~~L~l~~~~l~~~p------~~~~l---------~~L~~L~l~~~~~l-~~lp---~~~~~l~~L~~L~l 84 (189)
+..+..+++|++|++++|.++..+ .+..+ ++|++|++++|..- ..++ ..+..+++|+.|++
T Consensus 115 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 194 (386)
T 2ca6_A 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEEC
Confidence 445778999999999999987542 23334 89999999996533 2444 45678899999999
Q ss_pred cCCCCCc------cCccccCCCCCCcEEEccCccC-----CCCChhchhccCCC-----CCCCCC-----ccccc--cCc
Q 037904 85 SGLLKFR------EFPEKTSSRDELLEIHLEGTAI-----RGLPASIELLFGNA-----APNLKN-----VPETL--GNV 141 (189)
Q Consensus 85 ~~~~~~~------~lp~~~~~l~~L~~l~l~~~~~-----~~lp~~~~~L~~L~-----~~~l~~-----lp~~~--~~l 141 (189)
++| .+. .+|..+..+++|+.|++++|.+ ..+|..+..+++|+ .+.+.. +|..+ +.+
T Consensus 195 ~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 273 (386)
T 2ca6_A 195 VQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273 (386)
T ss_dssp CSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred cCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence 996 454 2444778889999999999998 45677777777777 566664 35555 348
Q ss_pred ccccc-ccCCcCccc-----cC----cccccccceeccCCc
Q 037904 142 ESLEV-RLSCHKRAK-----MQ----NDFDCVEQIAKKDSD 172 (189)
Q Consensus 142 ~~L~~-l~~~~~l~~-----~~----~~l~~L~~L~l~~~~ 172 (189)
++|+. ....+.+.. +| ..+++|++|+++++.
T Consensus 274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 88988 444455665 66 347999999999986
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=1e-12 Score=95.70 Aligned_cols=131 Identities=20% Similarity=0.233 Sum_probs=73.7
Q ss_pred CcEEEccCC--CccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEcc
Q 037904 33 LWEVLSDGT--DIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLE 109 (189)
Q Consensus 33 L~~L~l~~~--~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~ 109 (189)
++...++++ .++.+| .+..+++|++|++++| .+..+| .+.++++|+.|++++| .+..+|..+..+++|+.|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence 334444433 444555 5566666666666663 345555 5666666666666663 445566555555566666666
Q ss_pred CccCCCCChhchhccCCC-----CCCCCCccc--cccCcccccc-ccCCcCcccc-C-------------ccccccccee
Q 037904 110 GTAIRGLPASIELLFGNA-----APNLKNVPE--TLGNVESLEV-RLSCHKRAKM-Q-------------NDFDCVEQIA 167 (189)
Q Consensus 110 ~~~~~~lp~~~~~L~~L~-----~~~l~~lp~--~~~~l~~L~~-l~~~~~l~~~-~-------------~~l~~L~~L~ 167 (189)
+|.+..+| .+..++.|+ .+.++.++. .+..+++|+. ....+.+... | ..+++|+.|+
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 66666554 344444444 455555543 5677777777 3333444332 1 4567778776
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=2.6e-12 Score=93.46 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=82.5
Q ss_pred hhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCc
Q 037904 25 RLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELL 104 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 104 (189)
..+..+++|++|++++|.++.+|.+..+++|++|++++| .+..+|..+..+++|+.|++++| .+..+| .++.+++|+
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred HHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence 467888999999999999988887788899999999985 56788887777889999999985 666676 577788899
Q ss_pred EEEccCccCCCCCh--hchhccCCC
Q 037904 105 EIHLEGTAIRGLPA--SIELLFGNA 127 (189)
Q Consensus 105 ~l~l~~~~~~~lp~--~~~~L~~L~ 127 (189)
.|++++|.+..++. .+..+++|+
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCS
T ss_pred EEECCCCcCCchhHHHHHhcCCCCC
Confidence 99999999987654 567777766
No 131
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=3.4e-09 Score=83.12 Aligned_cols=93 Identities=22% Similarity=0.175 Sum_probs=72.2
Q ss_pred CCCcchhhhcCCCCcEEEccC-CCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCcc
Q 037904 20 PGNCSRLWEEADTLWEVLSDG-TDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPE 95 (189)
Q Consensus 20 ~~~~~~~~~~l~~L~~L~l~~-~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~ 95 (189)
....+. +..+++|++|++++ |.++.+| .+.++.+|+.|+|++| .+..++ ..|.++++|+.|++++ +.+..+|.
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~ 97 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-NALESLSW 97 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-SCCSCCCS
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC-CccceeCH
Confidence 334555 77788899999996 9999887 7889999999999996 456555 4678999999999999 56777776
Q ss_pred ccCCCCCCcEEEccCccCCC
Q 037904 96 KTSSRDELLEIHLEGTAIRG 115 (189)
Q Consensus 96 ~~~~l~~L~~l~l~~~~~~~ 115 (189)
.+.....|+.|++.+|.+..
T Consensus 98 ~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp TTTCSCCCCEEECCSSCCCC
T ss_pred HHcccCCceEEEeeCCCccC
Confidence 54333349999999988764
No 132
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=1.7e-08 Score=79.07 Aligned_cols=86 Identities=16% Similarity=0.158 Sum_probs=72.1
Q ss_pred cEEEccCC-CccCCCCccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEEccC
Q 037904 34 WEVLSDGT-DIKEPLSIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIHLEG 110 (189)
Q Consensus 34 ~~L~l~~~-~l~~~p~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~ 110 (189)
..++.+++ +++.+|.+..+.+|+.|+|++++.+..+| ..|.++++|+.|++++| .+..++ ..+..+++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 45688887 89999877888999999999646677777 57899999999999996 565554 5789999999999999
Q ss_pred ccCCCCChhc
Q 037904 111 TAIRGLPASI 120 (189)
Q Consensus 111 ~~~~~lp~~~ 120 (189)
|.+..+|..+
T Consensus 90 N~l~~~~~~~ 99 (347)
T 2ifg_A 90 NALESLSWKT 99 (347)
T ss_dssp SCCSCCCSTT
T ss_pred CccceeCHHH
Confidence 9999988754
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.83 E-value=8.9e-10 Score=87.18 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=76.7
Q ss_pred hhhhcCC-CCcEEEccCCCccCCC--CccCC-----CCCcEEeccCCcCCccCc-cc----ccCC-CCCCEEeccCCCCC
Q 037904 25 RLWEEAD-TLWEVLSDGTDIKEPL--SIELL-----FGLVQLTLNGCKNLEHLP-RT----ISAL-KYLSTLNLSGLLKF 90 (189)
Q Consensus 25 ~~~~~l~-~L~~L~l~~~~l~~~p--~~~~l-----~~L~~L~l~~~~~l~~lp-~~----~~~l-~~L~~L~l~~~~~~ 90 (189)
+.+..++ +|++|++++|.+++.. .+..+ ++|++|++++|. ++..+ .. +..+ ++|+.|++++|. +
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l 121 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-F 121 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-G
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-C
Confidence 3445565 6777777777766653 44443 667777777754 33332 22 3333 677777777743 3
Q ss_pred ccCcc-----ccCC-CCCCcEEEccCccCCC-----CChhchhcc-CCC-----CCCCCCccc-----cccCc-ccccc-
Q 037904 91 REFPE-----KTSS-RDELLEIHLEGTAIRG-----LPASIELLF-GNA-----APNLKNVPE-----TLGNV-ESLEV- 146 (189)
Q Consensus 91 ~~lp~-----~~~~-l~~L~~l~l~~~~~~~-----lp~~~~~L~-~L~-----~~~l~~lp~-----~~~~l-~~L~~- 146 (189)
+..+. .+.. ..+|++|++++|.+.+ ++..+..+. .|+ .+.++.... .+... ++|+.
T Consensus 122 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L 201 (362)
T 3goz_A 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201 (362)
T ss_dssp GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEE
Confidence 33331 1333 2467777777776653 222233222 333 455544332 23333 46766
Q ss_pred ccCCcCccc-----cC---c-ccccccceeccCCc
Q 037904 147 RLSCHKRAK-----MQ---N-DFDCVEQIAKKDSD 172 (189)
Q Consensus 147 l~~~~~l~~-----~~---~-~l~~L~~L~l~~~~ 172 (189)
..+.+.++. ++ . ..++|++|+++++.
T Consensus 202 ~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred ECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 334455665 33 1 23578888887764
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.79 E-value=1.3e-09 Score=86.23 Aligned_cols=140 Identities=11% Similarity=0.112 Sum_probs=70.9
Q ss_pred CCCcEEEccCCCccCCC--C----ccCC-CCCcEEeccCCcCCccCcc-cc----cC-CCCCCEEeccCCCCCc-----c
Q 037904 31 DTLWEVLSDGTDIKEPL--S----IELL-FGLVQLTLNGCKNLEHLPR-TI----SA-LKYLSTLNLSGLLKFR-----E 92 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~----~~~l-~~L~~L~l~~~~~l~~lp~-~~----~~-l~~L~~L~l~~~~~~~-----~ 92 (189)
++|++|++++|.+++.+ . +..+ ++|++|++++|. ++..+. .+ .. .++|++|++++| .++ .
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHH
Confidence 66777777777666543 2 2333 567777776644 333332 22 22 246777777664 333 2
Q ss_pred CccccCCCC-CCcEEEccCccCCCCCh-hc----hhc-cCCC-----CCCCCC-----ccccccCc-ccccc-ccCCcCc
Q 037904 93 FPEKTSSRD-ELLEIHLEGTAIRGLPA-SI----ELL-FGNA-----APNLKN-----VPETLGNV-ESLEV-RLSCHKR 153 (189)
Q Consensus 93 lp~~~~~l~-~L~~l~l~~~~~~~lp~-~~----~~L-~~L~-----~~~l~~-----lp~~~~~l-~~L~~-l~~~~~l 153 (189)
++..+..+. +|++|++++|.+..... .+ ... +.|+ .+.+.. ++..+..+ ++|+. ..+.+.+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 333344443 66777777766654332 22 222 2343 445544 44444442 35666 3333445
Q ss_pred cccC--------cccccccceeccCCc
Q 037904 154 AKMQ--------NDFDCVEQIAKKDSD 172 (189)
Q Consensus 154 ~~~~--------~~l~~L~~L~l~~~~ 172 (189)
...+ ..+++|+.|++++|.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 4443 345566666666654
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=1.9e-08 Score=78.52 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=49.4
Q ss_pred CCCCcEEEccCccCCCCCh-hchhccCCC----CCCCCCccc-cccCccccc-c-ccCCcCccccC----ccccccccee
Q 037904 100 RDELLEIHLEGTAIRGLPA-SIELLFGNA----APNLKNVPE-TLGNVESLE-V-RLSCHKRAKMQ----NDFDCVEQIA 167 (189)
Q Consensus 100 l~~L~~l~l~~~~~~~lp~-~~~~L~~L~----~~~l~~lp~-~~~~l~~L~-~-l~~~~~l~~~~----~~l~~L~~L~ 167 (189)
+++|+.+++++|.+..+|. .|.++..|+ ..+++.++. +|.++++|+ . ... +.++.++ ..+++|+.++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~-~~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELP-ASVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEEC-TTCCEECTTTTTTCTTEEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEc-ccceEEchhhhhCCccCCEEE
Confidence 5688888888888888876 467777777 445777776 577888887 6 222 2677776 5567788887
Q ss_pred ccC
Q 037904 168 KKD 170 (189)
Q Consensus 168 l~~ 170 (189)
+.+
T Consensus 304 l~~ 306 (329)
T 3sb4_A 304 ATG 306 (329)
T ss_dssp ECS
T ss_pred eCC
Confidence 744
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=6.7e-08 Score=75.35 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=67.2
Q ss_pred CCCCCEEeccCCCCCccCcc-ccCCCCCCcEEEccCccCCCCCh-hchhccCCC-----CCCCCCccc-cccCcccccc-
Q 037904 76 LKYLSTLNLSGLLKFREFPE-KTSSRDELLEIHLEGTAIRGLPA-SIELLFGNA-----APNLKNVPE-TLGNVESLEV- 146 (189)
Q Consensus 76 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~- 146 (189)
+++|+.+++++| .+..+|+ .+..+.+|+.+++..+ ++.++. .|.++..|+ .+.++.++. +|.++++|+.
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEE
Confidence 778999999984 5777775 5889999999999987 777754 466666664 457777765 6888999998
Q ss_pred ccCCcCccccC----ccccccccee
Q 037904 147 RLSCHKRAKMQ----NDFDCVEQIA 167 (189)
Q Consensus 147 l~~~~~l~~~~----~~l~~L~~L~ 167 (189)
....+.++.++ ..+++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 55557788887 4455666554
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.60 E-value=3.8e-09 Score=85.64 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=16.8
Q ss_pred CCcEEEccCCCccC-----CC-CccCCCCCcEEeccCC
Q 037904 32 TLWEVLSDGTDIKE-----PL-SIELLFGLVQLTLNGC 63 (189)
Q Consensus 32 ~L~~L~l~~~~l~~-----~p-~~~~l~~L~~L~l~~~ 63 (189)
+|++|++++|.+++ ++ .+..+++|+.|++++|
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC
Confidence 45555555555542 23 4455555555555554
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.55 E-value=5.2e-09 Score=84.87 Aligned_cols=146 Identities=13% Similarity=0.137 Sum_probs=87.6
Q ss_pred chhhhcCCCCcEEEccCCCccCC------C-CccCCCCCcEEeccCCcCCcc-----CcccccCCCCCCEEeccCCCCCc
Q 037904 24 SRLWEEADTLWEVLSDGTDIKEP------L-SIELLFGLVQLTLNGCKNLEH-----LPRTISALKYLSTLNLSGLLKFR 91 (189)
Q Consensus 24 ~~~~~~l~~L~~L~l~~~~l~~~------p-~~~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~ 91 (189)
++.+..+++|++|++++|.+++. + .+..+++|+.|++++| .++. ++..+.++++|+.|++++| .+.
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~ 297 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELG 297 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCc
Confidence 44566788889999988877653 2 2235778888888886 4554 5666777888888888885 333
Q ss_pred c-----CccccC-CCCCCcEEEccCccCCC-----CChhchhccCCC-----CCCCCCc-ccccc----C-cccccc--c
Q 037904 92 E-----FPEKTS-SRDELLEIHLEGTAIRG-----LPASIELLFGNA-----APNLKNV-PETLG----N-VESLEV--R 147 (189)
Q Consensus 92 ~-----lp~~~~-~l~~L~~l~l~~~~~~~-----lp~~~~~L~~L~-----~~~l~~l-p~~~~----~-l~~L~~--l 147 (189)
. +...+. ..++|+.|++++|.+.. ++..+..++.|+ .+.+... +..+. . .++|+. +
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 1 222222 22477888888777654 344455555555 4444332 11122 1 446666 4
Q ss_pred cCCcCcc-----ccC---cccccccceeccCCc
Q 037904 148 LSCHKRA-----KMQ---NDFDCVEQIAKKDSD 172 (189)
Q Consensus 148 ~~~~~l~-----~~~---~~l~~L~~L~l~~~~ 172 (189)
.+| .+. .++ ..+++|++|+++++.
T Consensus 378 ~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 378 ADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 443 444 344 446777777777764
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.53 E-value=5.4e-09 Score=87.29 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=40.9
Q ss_pred cCCCCcEEEccCC-CccC--CC-CccCCCCCcEEeccCCcCCcc-----CcccccCCCCCCEEeccCCC-CC--ccCccc
Q 037904 29 EADTLWEVLSDGT-DIKE--PL-SIELLFGLVQLTLNGCKNLEH-----LPRTISALKYLSTLNLSGLL-KF--REFPEK 96 (189)
Q Consensus 29 ~l~~L~~L~l~~~-~l~~--~p-~~~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~-~~--~~lp~~ 96 (189)
.+++|++|++++| .++. ++ .+.++++|++|++++|. +.. ++.....+++|+.|++++|. .+ ..++..
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 4667777777766 4443 23 33456667777776654 221 12222245566666666643 11 011112
Q ss_pred cCCCCCCcEEEccCc
Q 037904 97 TSSRDELLEIHLEGT 111 (189)
Q Consensus 97 ~~~l~~L~~l~l~~~ 111 (189)
+..+++|++|+++++
T Consensus 207 ~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHCTTCCEEECCTT
T ss_pred HHhCCCCcEEecCCC
Confidence 233455666666554
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.49 E-value=5.5e-08 Score=81.23 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=5.5
Q ss_pred CCCCCCEEeccC
Q 037904 75 ALKYLSTLNLSG 86 (189)
Q Consensus 75 ~l~~L~~L~l~~ 86 (189)
++++|+.|++++
T Consensus 218 ~~~~L~~L~L~~ 229 (592)
T 3ogk_B 218 NCRSLVSVKVGD 229 (592)
T ss_dssp HCTTCCEEECSS
T ss_pred hCCCCcEEeccC
Confidence 444444444444
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.43 E-value=1.1e-07 Score=79.49 Aligned_cols=101 Identities=13% Similarity=-0.041 Sum_probs=61.6
Q ss_pred hhhcCCCCcEEEccCCCccCC-----C-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCC---ccCccc
Q 037904 26 LWEEADTLWEVLSDGTDIKEP-----L-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKF---REFPEK 96 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~-----p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~---~~lp~~ 96 (189)
+...+++|++|++++|.++.+ + .+.++++|+.|++++| .+..+|..+.++++|+.|++..+... ...+..
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 344566777777777666532 2 3456788888888885 35557777777888888888643222 223345
Q ss_pred cCCCCCCcEEEccCccCCCCChhchhccCCC
Q 037904 97 TSSRDELLEIHLEGTAIRGLPASIELLFGNA 127 (189)
Q Consensus 97 ~~~l~~L~~l~l~~~~~~~lp~~~~~L~~L~ 127 (189)
++.+++|+.+++.++....+|..+..+++|+
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCc
Confidence 5566666666666654444555444444444
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.43 E-value=1.4e-08 Score=84.73 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=61.7
Q ss_pred hhcCCCCcEEEccCCCccCCC--Ccc-CCCCCcEEeccCCcCCcc--CcccccCCCCCCEEeccCCCCCcc-----Cccc
Q 037904 27 WEEADTLWEVLSDGTDIKEPL--SIE-LLFGLVQLTLNGCKNLEH--LPRTISALKYLSTLNLSGLLKFRE-----FPEK 96 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p--~~~-~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~-----lp~~ 96 (189)
...+++|++|++++|.+++.. .+. .+++|+.|++++|..++. ++..+.++++|++|++++|. +.. ++..
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~ 179 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHF 179 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGS
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHH
Confidence 456788999999988776543 443 678999999998865554 45545578999999999875 322 3334
Q ss_pred cCCCCCCcEEEccCcc
Q 037904 97 TSSRDELLEIHLEGTA 112 (189)
Q Consensus 97 ~~~l~~L~~l~l~~~~ 112 (189)
...+++|+.|+++++.
T Consensus 180 ~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA 195 (594)
T ss_dssp CTTCCCCCEEECTTCC
T ss_pred hhcCCcCcEEEecccC
Confidence 4467789999998876
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=3.4e-07 Score=65.17 Aligned_cols=84 Identities=13% Similarity=0.082 Sum_probs=65.0
Q ss_pred CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCC----CCCCEEeccCCCCCccCc-cccCCCCCC
Q 037904 32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISAL----KYLSTLNLSGLLKFREFP-EKTSSRDEL 103 (189)
Q Consensus 32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l----~~L~~L~l~~~~~~~~lp-~~~~~l~~L 103 (189)
.|++|++++|.+++.. .+.++++|+.|+|++|..++.-- ..+..+ ++|+.|++++|..++.-- ..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 6899999999988765 67899999999999998777532 234443 479999999998886522 345678899
Q ss_pred cEEEccCcc-CCC
Q 037904 104 LEIHLEGTA-IRG 115 (189)
Q Consensus 104 ~~l~l~~~~-~~~ 115 (189)
+.|+++++. +++
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 999999864 443
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.10 E-value=1.3e-07 Score=75.23 Aligned_cols=140 Identities=11% Similarity=0.145 Sum_probs=69.7
Q ss_pred CCCcEEEccCCCccCCC--Ccc-----CCCCCcEEeccCCcCCcc-Ccccc-cCCCCCCEEeccCCCCCcc-----Cccc
Q 037904 31 DTLWEVLSDGTDIKEPL--SIE-----LLFGLVQLTLNGCKNLEH-LPRTI-SALKYLSTLNLSGLLKFRE-----FPEK 96 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~-----~l~~L~~L~l~~~~~l~~-lp~~~-~~l~~L~~L~l~~~~~~~~-----lp~~ 96 (189)
+.+++|++++|.++... .+. ...+|+.|++++|. ++. ....+ ..+.+|+.|++++| .++. +...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 55677777777665432 221 22567777777653 221 11111 23445666777664 3322 1112
Q ss_pred c-CCCCCCcEEEccCccCCC-----CChhchhccCCC-----CCCCCC-----ccccccCcccccc-ccCCcCccccC--
Q 037904 97 T-SSRDELLEIHLEGTAIRG-----LPASIELLFGNA-----APNLKN-----VPETLGNVESLEV-RLSCHKRAKMQ-- 157 (189)
Q Consensus 97 ~-~~l~~L~~l~l~~~~~~~-----lp~~~~~L~~L~-----~~~l~~-----lp~~~~~l~~L~~-l~~~~~l~~~~-- 157 (189)
+ ...+.|+.|++++|.+.+ ++..+...+.|+ .|.+.. ++..+...+.|+. ....+.++..+
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2 234556667776666543 233333334444 344432 2334555566776 33334555433
Q ss_pred ------cccccccceeccCCc
Q 037904 158 ------NDFDCVEQIAKKDSD 172 (189)
Q Consensus 158 ------~~l~~L~~L~l~~~~ 172 (189)
...++|++|+++++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHhCCCCCEEeccCCC
Confidence 234677888887765
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.10 E-value=3.8e-05 Score=61.60 Aligned_cols=141 Identities=12% Similarity=0.110 Sum_probs=74.8
Q ss_pred hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCC---------------
Q 037904 26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGL--------------- 87 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~--------------- 87 (189)
.+.++++|+.+++.+|+++.++ .|. +.+|+.+.+.. .++.++. .|.++++|+.+++..+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~ 251 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGIT 251 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCS
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCccCccccccccCCcc
Confidence 4566777777777777666665 333 45666666653 2444442 4556666666666531
Q ss_pred -----CCCccCc-cccCCCCCCcEEEccCccCC-----CCC-hhchhccCCC----CCCCCCccc-cccCcccccc-ccC
Q 037904 88 -----LKFREFP-EKTSSRDELLEIHLEGTAIR-----GLP-ASIELLFGNA----APNLKNVPE-TLGNVESLEV-RLS 149 (189)
Q Consensus 88 -----~~~~~lp-~~~~~l~~L~~l~l~~~~~~-----~lp-~~~~~L~~L~----~~~l~~lp~-~~~~l~~L~~-l~~ 149 (189)
+.+..++ ..+..+.+|+.+.+.++.+. .++ ..|.++..|+ .++++.++. +|.++++|+. ..
T Consensus 252 ~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~l- 330 (401)
T 4fdw_A 252 TVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTI- 330 (401)
T ss_dssp EEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEE-
T ss_pred EEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEE-
Confidence 0122222 24555666666666655443 232 2345555554 344555554 4555666666 22
Q ss_pred CcCccccC----cccccccceeccCC
Q 037904 150 CHKRAKMQ----NDFDCVEQIAKKDS 171 (189)
Q Consensus 150 ~~~l~~~~----~~l~~L~~L~l~~~ 171 (189)
.+.++.++ ..+ +|+.+++.+.
T Consensus 331 p~~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 331 PANVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CTTCCEECTTSSSSS-CCCEEEECCS
T ss_pred CccccEEcHHhCCCC-CCCEEEEcCC
Confidence 23355554 344 6777776654
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=1.1e-05 Score=61.10 Aligned_cols=62 Identities=27% Similarity=0.366 Sum_probs=33.6
Q ss_pred cCCCCCcEEeccCCcCCccC---cccccCCCCCCEEeccCCCCCccCc--cccCCCCCCcEEEccCccCC
Q 037904 50 ELLFGLVQLTLNGCKNLEHL---PRTISALKYLSTLNLSGLLKFREFP--EKTSSRDELLEIHLEGTAIR 114 (189)
Q Consensus 50 ~~l~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~l~l~~~~~~ 114 (189)
.++++|+.|+|++| .+..+ |..+..+++|+.|++++ +.+..+. ..+..+ +|+.|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCcCc
Confidence 34566666666664 33333 33445666667777666 3444432 122223 6677777776664
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.83 E-value=0.00017 Score=57.76 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=38.6
Q ss_pred CcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEEcc
Q 037904 33 LWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIHLE 109 (189)
Q Consensus 33 L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~ 109 (189)
|+.+.+.. .++.++ .|.+|.+|+.+++.+ +.+..++.....+.+|+.+.+.. .+..++ ..+..+.+|+.+.+.
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECC
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecC
Confidence 44444443 344443 555666666666655 34555554433455666666653 244443 245556666666665
Q ss_pred C
Q 037904 110 G 110 (189)
Q Consensus 110 ~ 110 (189)
.
T Consensus 235 ~ 235 (401)
T 4fdw_A 235 E 235 (401)
T ss_dssp T
T ss_pred C
Confidence 4
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.74 E-value=2.7e-06 Score=67.58 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=81.5
Q ss_pred CCCcEEEccCCCccCCC---CccCCCCCcEEeccCCcCCccCc-cc----c-cCCCCCCEEeccCCCCCcc-----Cccc
Q 037904 31 DTLWEVLSDGTDIKEPL---SIELLFGLVQLTLNGCKNLEHLP-RT----I-SALKYLSTLNLSGLLKFRE-----FPEK 96 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p---~~~~l~~L~~L~l~~~~~l~~lp-~~----~-~~l~~L~~L~l~~~~~~~~-----lp~~ 96 (189)
++|++|++++|.+++.. -...+.+|+.|++++|. ++... .. + ...++|+.|++++|. ++. ++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence 68999999999887542 33456789999999964 44321 22 2 246789999999964 432 4455
Q ss_pred cCCCCCCcEEEccCccCCC-----CChhchhccCCC-----CCCCCC-----ccccccCcccccc-ccCCcCccccC
Q 037904 97 TSSRDELLEIHLEGTAIRG-----LPASIELLFGNA-----APNLKN-----VPETLGNVESLEV-RLSCHKRAKMQ 157 (189)
Q Consensus 97 ~~~l~~L~~l~l~~~~~~~-----lp~~~~~L~~L~-----~~~l~~-----lp~~~~~l~~L~~-l~~~~~l~~~~ 157 (189)
+...++|++|++++|.+.+ ++..+...++|+ .|.++. +...+...+.|+. ..+.|.++..+
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 6777889999999998764 234455555555 566653 3334555677888 44445566544
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=2.4e-05 Score=55.60 Aligned_cols=58 Identities=12% Similarity=0.219 Sum_probs=33.0
Q ss_pred CCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCc-cccCCC----CCCcEEEccCc
Q 037904 53 FGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFP-EKTSSR----DELLEIHLEGT 111 (189)
Q Consensus 53 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l----~~L~~l~l~~~ 111 (189)
..|+.|++++|. ++.. -..+.++++|+.|++++|..++.-- ..+..+ ++|++|++++|
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 457777777765 3332 2335667777777777776654321 122222 24666766664
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.46 E-value=0.00013 Score=57.77 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=68.8
Q ss_pred hhcCCCCcEEEccCCCcc----------CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc
Q 037904 27 WEEADTLWEVLSDGTDIK----------EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE 95 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~----------~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~ 95 (189)
...+++|+.|.+.+.... .++ .+..+++|+.|++++|..+ .++. + .+++|+.|++..|........
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 445667777776543221 122 3345677777777775322 2333 3 366777777766432111111
Q ss_pred cc--CCCCCCcEEEccC--cc------CCCCChhc--hhccCCC-----CCCCCC-ccccc---cCcccccc-ccCCcCc
Q 037904 96 KT--SSRDELLEIHLEG--TA------IRGLPASI--ELLFGNA-----APNLKN-VPETL---GNVESLEV-RLSCHKR 153 (189)
Q Consensus 96 ~~--~~l~~L~~l~l~~--~~------~~~lp~~~--~~L~~L~-----~~~l~~-lp~~~---~~l~~L~~-l~~~~~l 153 (189)
.+ ..+++|++|+|.. +. +..+...+ ..+++|+ .+.+.. .+..+ ..+++|+. ...++.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 22 2466777777642 11 11111111 1122232 222221 11111 24667777 4455666
Q ss_pred ccc-----C---cccccccceeccCCc
Q 037904 154 AKM-----Q---NDFDCVEQIAKKDSD 172 (189)
Q Consensus 154 ~~~-----~---~~l~~L~~L~l~~~~ 172 (189)
+.. + ..+++|+.|++++|.
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCc
Confidence 652 2 346788888888774
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.32 E-value=0.00012 Score=52.28 Aligned_cols=89 Identities=17% Similarity=0.250 Sum_probs=66.1
Q ss_pred hhhhcCCCCcEEEccCC-CccCC-----C-CccCCCCCcEEeccCCcCCcc-----CcccccCCCCCCEEeccCCCCCcc
Q 037904 25 RLWEEADTLWEVLSDGT-DIKEP-----L-SIELLFGLVQLTLNGCKNLEH-----LPRTISALKYLSTLNLSGLLKFRE 92 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~-~l~~~-----p-~~~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~ 92 (189)
.++...+.|++|++++| .+.+. . .+...+.|++|++++|. +.. +...+...++|++|++++| .++.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 34667889999999999 88753 2 45667899999999964 442 3444556688999999995 4443
Q ss_pred -----CccccCCCCCCcEEEc--cCccCCC
Q 037904 93 -----FPEKTSSRDELLEIHL--EGTAIRG 115 (189)
Q Consensus 93 -----lp~~~~~l~~L~~l~l--~~~~~~~ 115 (189)
+...+...+.|++|++ ++|.+.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 4566777788999999 7787764
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.27 E-value=8.9e-05 Score=52.92 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=65.7
Q ss_pred hhhhcCCCCcEEEccCCCccCC-----C-CccCCCCCcEEeccCCcCCcc-----CcccccCCCCCCEEec--cCCCCCc
Q 037904 25 RLWEEADTLWEVLSDGTDIKEP-----L-SIELLFGLVQLTLNGCKNLEH-----LPRTISALKYLSTLNL--SGLLKFR 91 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~~-----p-~~~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l--~~~~~~~ 91 (189)
+.+...++|++|++++|.+.+. . .+...+.|++|++++|. ++. +...+...++|+.|++ ++| .++
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~ 136 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQ-PLG 136 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCC
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCC
Confidence 3455678999999999988763 2 44556789999999964 443 4566777889999999 664 454
Q ss_pred c-----CccccCCCCCCcEEEccCccCC
Q 037904 92 E-----FPEKTSSRDELLEIHLEGTAIR 114 (189)
Q Consensus 92 ~-----lp~~~~~l~~L~~l~l~~~~~~ 114 (189)
. +.+.+...+.|+.|++++|.+.
T Consensus 137 ~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 137 NNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2 4455666788999999998764
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.18 E-value=0.00035 Score=52.92 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=15.3
Q ss_pred CCCCcEEEccCCCccCCC----CccCCCCCcEEeccC
Q 037904 30 ADTLWEVLSDGTDIKEPL----SIELLFGLVQLTLNG 62 (189)
Q Consensus 30 l~~L~~L~l~~~~l~~~p----~~~~l~~L~~L~l~~ 62 (189)
+++|+.|++++|+++.++ .+..+++|+.|+|++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC
Confidence 444555555555444432 223444555555554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.58 E-value=0.0005 Score=54.32 Aligned_cols=130 Identities=14% Similarity=0.043 Sum_probs=75.6
Q ss_pred cchhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccc--cCCCCCCEEeccCCCC-------CccC
Q 037904 23 CSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTI--SALKYLSTLNLSGLLK-------FREF 93 (189)
Q Consensus 23 ~~~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~l~~~~~-------~~~l 93 (189)
...++..+++|++|.++++.-..++.+. +.+|+.|++..|..-......+ ..+++|+.|+++.+.. +..+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 4456778899999999987312333333 7889999998754222211223 2688999999863211 2222
Q ss_pred cccc--CCCCCCcEEEccCccCCC-CChhc---hhccCCC-----CCCCCC-----ccccccCcccccc--ccCCcCcc
Q 037904 94 PEKT--SSRDELLEIHLEGTAIRG-LPASI---ELLFGNA-----APNLKN-----VPETLGNVESLEV--RLSCHKRA 154 (189)
Q Consensus 94 p~~~--~~l~~L~~l~l~~~~~~~-lp~~~---~~L~~L~-----~~~l~~-----lp~~~~~l~~L~~--l~~~~~l~ 154 (189)
...+ ..+++|+.|++..|.+.. .+..+ ..++.|+ ++.+.. ++..+..+++|+. +.+ +.+.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~-n~i~ 320 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY-NYLS 320 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS-BBCC
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC-CcCC
Confidence 2222 357899999998877653 11111 1233444 565654 3444456677877 444 3444
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.36 E-value=0.03 Score=43.89 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=56.1
Q ss_pred hhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCcc-ccCCCCC
Q 037904 27 WEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPE-KTSSRDE 102 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 102 (189)
+....+++.+.+..+ ++.++ .+.++..|+.+.+.. .++.+. ..+.++.+|+.+.+.. .+..++. .+..+.+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCC--CccEeCccccceeehhccccccc--cceeccccccccccc
Confidence 344556666666543 44443 566677777777754 244444 3455677777777754 3444443 4566677
Q ss_pred CcEEEccCccCCCCCh-hchhccCCC
Q 037904 103 LLEIHLEGTAIRGLPA-SIELLFGNA 127 (189)
Q Consensus 103 L~~l~l~~~~~~~lp~-~~~~L~~L~ 127 (189)
|+.+.+..+.++.++. .|.++..|+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred cccccccccccceehhhhhcCCCCCC
Confidence 7777777666666543 355544444
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.34 E-value=0.047 Score=42.75 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=38.8
Q ss_pred hcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCC
Q 037904 28 EEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDEL 103 (189)
Q Consensus 28 ~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L 103 (189)
..+..|+.+.+..+ ++.++ .+.++..|+.+.+.. .+..++. .+.+|.+|+.+.+.+ ..+..++ ..+..+.+|
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTC
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCCCCC
Confidence 34455555555443 44443 455555566555543 2344432 345556666666554 2344443 244555556
Q ss_pred cEEEcc
Q 037904 104 LEIHLE 109 (189)
Q Consensus 104 ~~l~l~ 109 (189)
+.+.+.
T Consensus 313 ~~i~lp 318 (379)
T 4h09_A 313 SSVTLP 318 (379)
T ss_dssp CEEECC
T ss_pred CEEEcC
Confidence 665554
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.22 E-value=0.036 Score=43.81 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=39.5
Q ss_pred hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEecc
Q 037904 26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLS 85 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~ 85 (189)
.|.++.+|+++.+.. .++.++ .|.+|.+|+.+++.. .++.++. .+.++.+|+.+.+.
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhccc
Confidence 466778888888864 377776 788888888888865 2555543 46667777666554
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.00 E-value=0.015 Score=46.09 Aligned_cols=90 Identities=12% Similarity=0.109 Sum_probs=51.6
Q ss_pred hhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCc-cccCCCCC
Q 037904 27 WEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFP-EKTSSRDE 102 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~ 102 (189)
+..+..++.+....+. ++ .+..+.+|+.+.+.. .++.++ ..|.++.+|+.+++.. .++.++ ..+..+.+
T Consensus 272 F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTS 344 (394)
T ss_dssp TTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTT
T ss_pred cccccccceeccCcee---ecccccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCC
Confidence 3445555555554432 23 466677777777754 255554 3566777787777764 355554 35667777
Q ss_pred CcEEEccCccCCCCCh-hchhcc
Q 037904 103 LLEIHLEGTAIRGLPA-SIELLF 124 (189)
Q Consensus 103 L~~l~l~~~~~~~lp~-~~~~L~ 124 (189)
|+.+.+..+ ++.+.. .|.++.
T Consensus 345 L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 345 LSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp CCEECCCTT-CCEECTTTBTTCT
T ss_pred CCEEEECcc-ccEehHHHhhCCC
Confidence 777777554 444432 344433
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.81 E-value=0.042 Score=43.44 Aligned_cols=96 Identities=9% Similarity=0.157 Sum_probs=67.0
Q ss_pred hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCC
Q 037904 26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRD 101 (189)
Q Consensus 26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~ 101 (189)
.+.++..|+.+.+.++ +..++ .+.++..|+.+.+.. .+..++. .|.+|.+|+.+++.. .++.+. ..+..+.
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCC
Confidence 4667788888888654 34454 778888999888863 4666664 577889999999875 355554 4677888
Q ss_pred CCcEEEccCccCCCCCh-hchhccCCC
Q 037904 102 ELLEIHLEGTAIRGLPA-SIELLFGNA 127 (189)
Q Consensus 102 ~L~~l~l~~~~~~~lp~-~~~~L~~L~ 127 (189)
+|+.+.+..+ ++.+.. .|.++.+|+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 8999888643 555643 456654444
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.75 E-value=0.032 Score=37.20 Aligned_cols=52 Identities=25% Similarity=0.245 Sum_probs=34.9
Q ss_pred cEEEccCCCcc--CCC-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCC
Q 037904 34 WEVLSDGTDIK--EPL-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLL 88 (189)
Q Consensus 34 ~~L~l~~~~l~--~~p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~ 88 (189)
..++-++++++ .+| .+. .+++.|+|++ +.++.+|. .|..+++|+.|++.+|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 36677777777 777 443 3577888887 45667765 35667777777777643
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.56 E-value=0.099 Score=41.23 Aligned_cols=99 Identities=13% Similarity=0.165 Sum_probs=66.0
Q ss_pred ccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEEEccCccCCCCC-
Q 037904 43 IKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEIHLEGTAIRGLP- 117 (189)
Q Consensus 43 l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~~~lp- 117 (189)
++.+. .|.++..|+.+.+.. . ...+. ..+.++..|+.+.+.. .+..+++ .+..+.+|+.+.+..+ ++.+.
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~-~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPD-S-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCT-T-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred ceEcccceeeecccccEEeccc-c-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehH
Confidence 44454 688899999999875 2 33444 4678899999999974 4666664 5788899999999754 55553
Q ss_pred hhchhccCCC----CCCCCCccc-cccCcccccc
Q 037904 118 ASIELLFGNA----APNLKNVPE-TLGNVESLEV 146 (189)
Q Consensus 118 ~~~~~L~~L~----~~~l~~lp~-~~~~l~~L~~ 146 (189)
..|.++.+|+ .++++.+.. +|.++++|+.
T Consensus 328 ~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSSVTKIPESAFSNCTALNN 361 (394)
T ss_dssp TTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCE
T ss_pred hHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCE
Confidence 3466655555 344555544 4555555555
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.23 E-value=0.021 Score=38.14 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=30.6
Q ss_pred CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCc
Q 037904 31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCK 64 (189)
Q Consensus 31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~ 64 (189)
++++.|++++|+|+.+| .+..+.+|++|+|++|.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36999999999999998 78899999999999964
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.11 E-value=0.45 Score=34.05 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=55.0
Q ss_pred hhcCCCCcEEEccCC-CccCC-----C-CccCCCCCcEEeccCCcCCc-----cCcccccCCCCCCEEeccCCCCCc---
Q 037904 27 WEEADTLWEVLSDGT-DIKEP-----L-SIELLFGLVQLTLNGCKNLE-----HLPRTISALKYLSTLNLSGLLKFR--- 91 (189)
Q Consensus 27 ~~~l~~L~~L~l~~~-~l~~~-----p-~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~--- 91 (189)
..+-+.|++|+++++ ++.+. - .+..-..|+.|+|++|. ++ .+...+..=+.|+.|++++| .++
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN-FLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCC-cCCHHH
Confidence 445678999999885 66542 2 44555789999999854 44 23334444577999999884 443
Q ss_pred --cCccccCCCCCCcEEEccCc
Q 037904 92 --EFPEKTSSRDELLEIHLEGT 111 (189)
Q Consensus 92 --~lp~~~~~l~~L~~l~l~~~ 111 (189)
.+-+.+..-..|+.|+++++
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 23345665667899988764
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=82.85 E-value=0.75 Score=32.91 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=46.1
Q ss_pred cCCCCCcEEeccCCcCCcc-----CcccccCCCCCCEEeccCCCCCc-----cCccccCCCCCCcEEEccCccCCC
Q 037904 50 ELLFGLVQLTLNGCKNLEH-----LPRTISALKYLSTLNLSGLLKFR-----EFPEKTSSRDELLEIHLEGTAIRG 115 (189)
Q Consensus 50 ~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~l~l~~~~~~~ 115 (189)
.+-..|+.|++++++.+.. +-..+..=+.|+.|++++| .++ .+.+.+..-+.|+.|+|+.|.+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3446799999987545553 3445566678999999996 443 344455556789999999999864
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.14 E-value=5.5 Score=24.86 Aligned_cols=44 Identities=18% Similarity=0.070 Sum_probs=25.4
Q ss_pred CCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccC
Q 037904 41 TDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSG 86 (189)
Q Consensus 41 ~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~ 86 (189)
..++.+. .|.+|..|+.+.+-. .++.+. ..|.+|.+|+.+.+.+
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 3455554 566666666666654 244443 3456666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.64 E-value=35 Score=21.05 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=30.9
Q ss_pred hhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccC
Q 037904 25 RLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNG 62 (189)
Q Consensus 25 ~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~ 62 (189)
..|.++..|+++.+..+ ++.+. .|.+|.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 45778889999999875 67775 899999999999987
Done!