Query 037906
Match_columns 80
No_of_seqs 105 out of 216
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:35:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00148 40S ribosomal protein 100.0 1.5E-36 3.2E-41 226.1 6.4 70 5-74 135-205 (205)
2 KOG3283 40S ribosomal protein 100.0 1.9E-36 4.1E-41 224.3 5.9 72 4-75 128-200 (200)
3 PF01201 Ribosomal_S8e: Riboso 98.4 4.2E-08 9.2E-13 69.0 -1.0 19 40-58 114-132 (132)
4 COG2007 RPS8A Ribosomal protei 98.0 2.6E-06 5.6E-11 60.5 1.0 21 37-59 107-127 (127)
5 TIGR00307 S8e ribosomal protei 97.7 1E-05 2.2E-10 57.2 1.0 20 40-59 107-126 (127)
6 PRK04049 30S ribosomal protein 97.3 0.0001 2.2E-09 52.1 1.0 19 41-59 108-126 (127)
7 PTZ00388 40S ribosomal protein 95.7 0.0046 1E-07 47.5 1.1 19 40-58 204-222 (223)
8 PF10878 DUF2672: Protein of u 60.4 6.8 0.00015 25.4 1.7 13 58-70 26-39 (67)
9 PF09064 Tme5_EGF_like: Thromb 58.2 3.5 7.6E-05 23.6 0.1 15 45-59 15-29 (34)
10 cd01422 MGS Methylglyoxal synt 55.8 17 0.00036 24.1 3.1 33 27-59 59-94 (115)
11 PF03271 EB1: EB1-like C-termi 42.3 26 0.00057 20.2 2.1 14 58-71 2-15 (43)
12 PF00863 Peptidase_C4: Peptida 39.2 10 0.00022 29.0 0.1 18 41-58 144-166 (235)
13 PF09012 FeoC: FeoC like trans 38.7 22 0.00048 21.2 1.5 34 25-58 30-65 (69)
14 KOG3242 Oligoribonuclease (3'- 38.3 21 0.00046 27.5 1.6 24 51-74 179-204 (208)
15 PF04083 Abhydro_lipase: Parti 35.5 9.1 0.0002 23.5 -0.6 8 52-59 19-26 (63)
16 PRK05234 mgsA methylglyoxal sy 35.4 48 0.001 23.0 2.9 33 27-59 64-99 (142)
17 PF09791 Oxidored-like: Oxidor 34.6 51 0.0011 19.7 2.6 23 53-75 23-48 (48)
18 PF07313 DUF1460: Protein of u 32.0 20 0.00042 27.0 0.6 25 25-49 145-169 (216)
19 cd00532 MGS-like MGS-like doma 30.6 78 0.0017 20.4 3.2 33 27-59 56-92 (112)
20 PHA02666 hypothetical protein; 30.3 41 0.00089 26.8 2.1 17 58-74 228-244 (287)
21 KOG1367 3-phosphoglycerate kin 28.0 39 0.00085 28.3 1.7 23 50-72 180-202 (416)
22 KOG2630 Enolase-phosphatase E- 27.5 35 0.00075 27.0 1.3 22 35-57 215-236 (254)
23 smart00851 MGS MGS-like domain 26.0 97 0.0021 19.0 2.9 32 28-59 45-78 (90)
24 PF00415 RCC1: Regulator of ch 25.9 65 0.0014 17.3 1.9 16 36-51 1-16 (51)
25 cd01424 MGS_CPS_II Methylglyox 23.3 1.4E+02 0.003 18.9 3.3 33 27-59 56-88 (110)
26 CHL00132 psaF photosystem I su 23.1 65 0.0014 24.5 2.0 32 7-38 39-74 (185)
27 PF04694 Corona_3: Coronavirus 22.8 40 0.00087 21.4 0.7 11 33-43 30-40 (60)
28 PF11461 RILP: Rab interacting 22.2 79 0.0017 19.8 1.9 14 57-70 21-34 (60)
29 PRK05359 oligoribonuclease; Pr 21.8 78 0.0017 22.3 2.1 25 47-71 151-177 (181)
30 PF14006 YqzL: YqzL-like prote 20.2 50 0.0011 20.0 0.7 15 49-63 9-23 (47)
No 1
>PTZ00148 40S ribosomal protein S8; Provisional
Probab=100.00 E-value=1.5e-36 Score=226.11 Aligned_cols=70 Identities=56% Similarity=0.869 Sum_probs=67.4
Q ss_pred hhhhhhhHHHHHHHHHhccCCCChHHHHHHhcCceeEEeecCCCccccccchhhh-HHHHHHHHHHHhhhc
Q 037906 5 DEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIKNIQRKKG 74 (80)
Q Consensus 5 ~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILE-kELeFY~kk~~~kK~ 74 (80)
.++++|+++++||+.|+++++||++|+|||.+||||||||||||||||||||||| +||+||+++|++||+
T Consensus 135 ~~~k~s~~~~kk~~~r~~~~~~~~~leeqf~~GrllA~IsSRPGQ~Gr~dGyILEGkEL~FY~kk~~~kK~ 205 (205)
T PTZ00148 135 KAKKKSESLVAKLEVRKKNHKIDKALLEQFQSGRLLARISSRPGQSGRADGYILEGKELEFYLKKLEKKKK 205 (205)
T ss_pred hhhhhhHHHHHHHHHhhhhccccHHHHHHHhhCeEEEEEeCCCCCccceeEEEEecHHHHHHHHHHHhccC
Confidence 4679999999999999999999999999999999999999999999999999999 999999999999873
No 2
>KOG3283 consensus 40S ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-36 Score=224.26 Aligned_cols=72 Identities=58% Similarity=1.006 Sum_probs=69.0
Q ss_pred hhhhhhhhHHHHHHHHHhccCCCChHHHHHHhcCceeEEeecCCCccccccchhhh-HHHHHHHHHHHhhhcc
Q 037906 4 TDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIKNIQRKKGR 75 (80)
Q Consensus 4 ~~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILE-kELeFY~kk~~~kK~k 75 (80)
.+++++|+++++||++|+++++||+.|+|||++|||||||+|||||||+||||||| +||+||+++|++||+|
T Consensus 128 ~~~~k~sk~~~rk~~~r~~~a~vds~l~eqF~~GrL~A~isSrpGQ~GradgyileGkEl~FYlrki~~kk~k 200 (200)
T KOG3283|consen 128 ILNKKKSKHVQRKYAERQKNAKVDSSLEEQFAAGRLYACISSRPGQCGRADGYILEGKELEFYLRKIKAKKGK 200 (200)
T ss_pred cccchhhHHHHHHHHHhhccccccHHHHHHHhcCcEEEEEeCCCCcccccceeeeccchhHHHHHHhhhhcCC
Confidence 45688999999999999999999999999999999999999999999999999999 9999999999999864
No 3
>PF01201 Ribosomal_S8e: Ribosomal protein S8e; InterPro: IPR022309 A number of eukaryotic and archaeal ribosomal proteins have been grouped based on sequence similarities []. One of these families, S8e, consists of a number of proteins with either about 220 amino acids (in eukaryotes) or about 125 amino acids (in archaea). This entry also contains proteins annotated as NSA2, which are though to be involved in ribosomal biogenesis of the 60S ribosomal subunit, having a role in the quality control of pre-60S particles. They are a component of the pre-66S ribosomal particle. ; PDB: 2KCY_A 2KCP_A 3U5G_I 3U5C_I 2KCO_A 2XZM_2 2XZN_2.
Probab=98.37 E-value=4.2e-08 Score=68.97 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=18.5
Q ss_pred eEEeecCCCccccccchhh
Q 037906 40 LACLSSPPSHCGRADGYIL 58 (80)
Q Consensus 40 lA~IsSRPGQ~GraDGyIL 58 (80)
||+|+|||||+|.+|||||
T Consensus 114 ~A~vtSRPGQdG~vnavLl 132 (132)
T PF01201_consen 114 YARVTSRPGQDGVVNAVLL 132 (132)
T ss_dssp EEEEESEHHHHSCEEEEEE
T ss_pred eEEEEeCCCCcceeeEEEC
Confidence 9999999999999999997
No 4
>COG2007 RPS8A Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=2.6e-06 Score=60.51 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=20.1
Q ss_pred CceeEEeecCCCccccccchhhh
Q 037906 37 GRLLACLSSPPSHCGRADGYILE 59 (80)
Q Consensus 37 GrllA~IsSRPGQ~GraDGyILE 59 (80)
| ||+|+|||||.|.++|++||
T Consensus 107 G--~A~VTsRPgQdG~vNavLl~ 127 (127)
T COG2007 107 G--YAVVTSRPGQDGVVNAVLLE 127 (127)
T ss_pred e--EEEEecCCCccceeEEEEeC
Confidence 7 99999999999999999986
No 5
>TIGR00307 S8e ribosomal protein S8.e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not.
Probab=97.74 E-value=1e-05 Score=57.18 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=19.0
Q ss_pred eEEeecCCCccccccchhhh
Q 037906 40 LACLSSPPSHCGRADGYILE 59 (80)
Q Consensus 40 lA~IsSRPGQ~GraDGyILE 59 (80)
+|+|+|||||.|.++|++||
T Consensus 107 ~A~VTsrPgQdG~vNavll~ 126 (127)
T TIGR00307 107 YARVTSRPGQDGVVNGVLIE 126 (127)
T ss_pred EEEEecCCCcCceEeEEEec
Confidence 59999999999999999997
No 6
>PRK04049 30S ribosomal protein S8e; Validated
Probab=97.26 E-value=0.0001 Score=52.14 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=18.4
Q ss_pred EEeecCCCccccccchhhh
Q 037906 41 ACLSSPPSHCGRADGYILE 59 (80)
Q Consensus 41 A~IsSRPGQ~GraDGyILE 59 (80)
|.|+|||||.|-.+|++||
T Consensus 108 A~VTSRPGQdG~vNavLi~ 126 (127)
T PRK04049 108 AKVTSRPGQDGVVNAVLIE 126 (127)
T ss_pred EEEecCCCcCceEEEEEec
Confidence 9999999999999999987
No 7
>PTZ00388 40S ribosomal protein S8-like; Provisional
Probab=95.66 E-value=0.0046 Score=47.49 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=17.9
Q ss_pred eEEeecCCCccccccchhh
Q 037906 40 LACLSSPPSHCGRADGYIL 58 (80)
Q Consensus 40 lA~IsSRPGQ~GraDGyIL 58 (80)
||.|+|||||.|-.+|++|
T Consensus 204 yAqVTsrPgQDG~VNAVLL 222 (223)
T PTZ00388 204 YAQVTNNPENDGCINAVLL 222 (223)
T ss_pred eEEEecCCCcCceeeEEEe
Confidence 6999999999999999987
No 8
>PF10878 DUF2672: Protein of unknown function (DUF2672); InterPro: IPR022718 This group of proteins with unknown function appears to be restricted to Rickettsiaceae.
Probab=60.42 E-value=6.8 Score=25.40 Aligned_cols=13 Identities=54% Similarity=1.002 Sum_probs=11.1
Q ss_pred hh-HHHHHHHHHHH
Q 037906 58 LE-KELEFYIKNIQ 70 (80)
Q Consensus 58 LE-kELeFY~kk~~ 70 (80)
|| +.+.||+++|-
T Consensus 26 le~eQ~NFYlkkIi 39 (67)
T PF10878_consen 26 LETEQLNFYLKKII 39 (67)
T ss_pred hhHHHHHHHHHHHH
Confidence 67 88999999874
No 9
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=58.24 E-value=3.5 Score=23.61 Aligned_cols=15 Identities=40% Similarity=0.948 Sum_probs=13.3
Q ss_pred cCCCccccccchhhh
Q 037906 45 SPPSHCGRADGYILE 59 (80)
Q Consensus 45 SRPGQ~GraDGyILE 59 (80)
.-|+||-=+|||||.
T Consensus 15 n~~~~C~CPeGyIld 29 (34)
T PF09064_consen 15 NSPGQCFCPEGYILD 29 (34)
T ss_pred CCCCceeCCCceEec
Confidence 468899999999997
No 10
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=55.84 E-value=17 Score=24.11 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=27.4
Q ss_pred ChHHHHHHhcCceeEEeecC-C-Cccc-cccchhhh
Q 037906 27 DPHIEEQFASGRLLACLSSP-P-SHCG-RADGYILE 59 (80)
Q Consensus 27 ~~~L~eqf~~GrllA~IsSR-P-GQ~G-raDGyILE 59 (80)
+|.+.+.+..|.+=.+|..+ | |+-+ +.||+.|.
T Consensus 59 ~~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iR 94 (115)
T cd01422 59 DQQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALL 94 (115)
T ss_pred hhHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHH
Confidence 37799999999998888764 4 8877 99999875
No 11
>PF03271 EB1: EB1-like C-terminal motif; InterPro: IPR004953 A group of microtubule-associated proteins called +TIPs (plus end tracking proteins), including EB1 (end-binding protein 1) family proteins, label growing microtubules ends specifically in diverse organisms and are implicated in spindle dynamics, chromosome segregation, and directing microtubules toward cortical sites. EB1 members have a bipartite composition: the N-terminal CH domain (IPR001715 from INTERPRO) mediates microtubule plus end localization and a C-terminal cargo binding domain (EB1-C) that captures cell polarity determinants. The EB1-C domain comprises a unique EB1-like sequence motif that acts as a binding site for other +TIP proteins. It interacts with the carboxy terminus of the adenomatous polyposis coli (APC) tumor suppressor, a well conserved +TIP phosphoprotein with a pivotal function in cell cycle regulation. Another binding partner of the EB1-C domain is the well conserved +TIP protein dynactin, a component of the large cytoplasmic dynein/dynactin complex [, , ]. The ~80-residue EB1-C domain starts with a long smoothly curved helix (alpha1), which is followed by a hairpin connection leading to a short second helix (alpha2) running antiparallel to alpha1. The two parallel alpha1 helices of the EB1-C domain dimer wrap around each other in a slightly left-handed supercoil. The two alpha2 helices run antiparallel to helices alpha1 and form a similar fork in the opposite orientation and rotated by 90 degrees. As a result, two helical segments from each monomer form a four-helix bundle. The side chain forming the hydrophobic core of this bundle are highly conserved [, , ]. Some protein known to contain an EB1-C domain are listed below: Yeast protein BIM1. Fission yeast microtubule integrity protein mal3. Vertebrate microtubule-associated protein RP/EB family member 1 (EB1). Vertebrate microtubule-associated protein RP/EB family member 2 (EB2 or RP1). Vertebrate microtubule-associated protein RP/EB family member 3 (EBF3). ; GO: 0008017 microtubule binding; PDB: 3TQ7_B 4E61_B 2HKQ_A 1YIG_B 3GJO_B 2HL5_B 1YIB_A 1WU9_A 1TXQ_B.
Probab=42.29 E-value=26 Score=20.23 Aligned_cols=14 Identities=43% Similarity=0.864 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHh
Q 037906 58 LEKELEFYIKNIQR 71 (80)
Q Consensus 58 LEkELeFY~kk~~~ 71 (80)
||+|=+||-.|++.
T Consensus 2 le~ERdFYf~KLR~ 15 (43)
T PF03271_consen 2 LEKERDFYFNKLRD 15 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 67899999888764
No 12
>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification.; InterPro: IPR001730 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. Nuclear inclusion A (NIA) proteases from potyviruses are cysteine peptidases belong to the MEROPS peptidase family C4 (NIa protease family, clan PA(C)) [, ]. Potyviruses include plant viruses in which the single-stranded RNA encodes a polyprotein with NIA protease activity, where proteolytic cleavage is specific for Gln+Gly sites. The NIA protease acts on the polyprotein, releasing itself by Gln+Gly cleavage at both the N- and C-termini. It further processes the polyprotein by cleavage at five similar sites in the C-terminal half of the sequence. In addition to its C-terminal protease activity, the NIA protease contains an N-terminal domain that has been implicated in the transcription process []. This peptidase is present in the nuclear inclusion protein of potyviruses.; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MMG_B 1Q31_B 1LVB_A 1LVM_A.
Probab=39.21 E-value=10 Score=29.04 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=7.5
Q ss_pred EEeecCCCccccc-----cchhh
Q 037906 41 ACLSSPPSHCGRA-----DGYIL 58 (80)
Q Consensus 41 A~IsSRPGQ~Gra-----DGyIL 58 (80)
=-|++.+|+||-+ ||.|+
T Consensus 144 HwIsTk~G~CG~PlVs~~Dg~IV 166 (235)
T PF00863_consen 144 HWISTKDGDCGLPLVSTKDGKIV 166 (235)
T ss_dssp E-C---TT-TT-EEEETTT--EE
T ss_pred EEecCCCCccCCcEEEcCCCcEE
Confidence 3578899999964 78775
No 13
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=38.67 E-value=22 Score=21.23 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=23.3
Q ss_pred CCChHHHHHHhcCceeEEeecCC--Cccccccchhh
Q 037906 25 TLDPHIEEQFASGRLLACLSSPP--SHCGRADGYIL 58 (80)
Q Consensus 25 kv~~~L~eqf~~GrllA~IsSRP--GQ~GraDGyIL 58 (80)
.|++.|+.-...|++-.+..+.+ |.|+.|++.-.
T Consensus 30 ~ve~mL~~l~~kG~I~~~~~~~~~~~~C~~C~~~~~ 65 (69)
T PF09012_consen 30 AVEAMLEQLIRKGYIRKVDMSSCCGGSCSSCGPASK 65 (69)
T ss_dssp HHHHHHHHHHCCTSCEEEEEE--SSSSSSS-SS---
T ss_pred HHHHHHHHHHHCCcEEEecCCCCCCCCCCCCCCccc
Confidence 46778888899999988877765 78998987653
No 14
>KOG3242 consensus Oligoribonuclease (3'->5' exoribonuclease) [RNA processing and modification]
Probab=38.27 E-value=21 Score=27.46 Aligned_cols=24 Identities=46% Similarity=0.538 Sum_probs=19.6
Q ss_pred ccccchhhh--HHHHHHHHHHHhhhc
Q 037906 51 GRADGYILE--KELEFYIKNIQRKKG 74 (80)
Q Consensus 51 GraDGyILE--kELeFY~kk~~~kK~ 74 (80)
-||=-=|.| +||.||...|.+|..
T Consensus 179 HrAldDI~ESI~ELq~Yr~nifkk~~ 204 (208)
T KOG3242|consen 179 HRALDDIRESIKELQYYRENIFKKST 204 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHhccCcc
Confidence 455566999 999999999988763
No 15
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=35.50 E-value=9.1 Score=23.48 Aligned_cols=8 Identities=63% Similarity=1.115 Sum_probs=6.0
Q ss_pred cccchhhh
Q 037906 52 RADGYILE 59 (80)
Q Consensus 52 raDGyILE 59 (80)
-.|||||+
T Consensus 19 T~DGYiL~ 26 (63)
T PF04083_consen 19 TEDGYILT 26 (63)
T ss_dssp -TTSEEEE
T ss_pred eCCCcEEE
Confidence 46999986
No 16
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=35.41 E-value=48 Score=23.02 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=26.8
Q ss_pred ChHHHHHHhcCceeEEeecC--CCccc-cccchhhh
Q 037906 27 DPHIEEQFASGRLLACLSSP--PSHCG-RADGYILE 59 (80)
Q Consensus 27 ~~~L~eqf~~GrllA~IsSR--PGQ~G-raDGyILE 59 (80)
++.+.+.+.+|.+-.+|..+ -|+-+ ..||+.|-
T Consensus 64 ~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IR 99 (142)
T PRK05234 64 DQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALL 99 (142)
T ss_pred chhHHHHHHcCceeEEEEecCCCCCCcccchHHHHH
Confidence 47799999999999999875 47777 88997664
No 17
>PF09791 Oxidored-like: Oxidoreductase-like protein, N-terminal; InterPro: IPR019180 This entry represents the N-terminal domain of various oxidoreductase-like proteins whose exact function is, as yet, unknown.
Probab=34.55 E-value=51 Score=19.68 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=18.1
Q ss_pred ccchhhh---HHHHHHHHHHHhhhcc
Q 037906 53 ADGYILE---KELEFYIKNIQRKKGR 75 (80)
Q Consensus 53 aDGyILE---kELeFY~kk~~~kK~k 75 (80)
|.-.|.. +||+-|...+++.+.|
T Consensus 23 C~~CVwd~Y~eel~~y~~~~~~~~~k 48 (48)
T PF09791_consen 23 CAPCVWDVYAEELEEYREALAAWQEK 48 (48)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHhC
Confidence 6677777 9999999988876643
No 18
>PF07313 DUF1460: Protein of unknown function (DUF1460); InterPro: IPR010846 This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.; PDB: 2P1G_B 2IM9_A.
Probab=32.02 E-value=20 Score=27.03 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=18.8
Q ss_pred CCChHHHHHHhcCceeEEeecCCCc
Q 037906 25 TLDPHIEEQFASGRLLACLSSPPSH 49 (80)
Q Consensus 25 kv~~~L~eqf~~GrllA~IsSRPGQ 49 (80)
.|++.+..++.+|-++|.+++.+|=
T Consensus 145 ~i~~~~~~~i~~GDiI~i~t~~~GL 169 (216)
T PF07313_consen 145 KINDKLLSQIKNGDIIAIVTNIKGL 169 (216)
T ss_dssp HH-CCHHTTS-TT-EEEEEEECTTE
T ss_pred HHhHHHHhcCCCCCEEEEEeCCCCC
Confidence 3466788999999999999999883
No 19
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=30.62 E-value=78 Score=20.39 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=25.7
Q ss_pred ChHHHHHHhc-CceeEEeecCCCcc---ccccchhhh
Q 037906 27 DPHIEEQFAS-GRLLACLSSPPSHC---GRADGYILE 59 (80)
Q Consensus 27 ~~~L~eqf~~-GrllA~IsSRPGQ~---GraDGyILE 59 (80)
+|.+.+.+.+ |++=-+|....|.. ...|||.|-
T Consensus 56 ~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iR 92 (112)
T cd00532 56 EPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALL 92 (112)
T ss_pred CcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHH
Confidence 5779999999 99887777554444 788999875
No 20
>PHA02666 hypothetical protein; Provisional
Probab=30.31 E-value=41 Score=26.80 Aligned_cols=17 Identities=53% Similarity=0.784 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHhhhc
Q 037906 58 LEKELEFYIKNIQRKKG 74 (80)
Q Consensus 58 LEkELeFY~kk~~~kK~ 74 (80)
||.||.||-+-|+--|.
T Consensus 228 LESElnFYrrYIqDTKs 244 (287)
T PHA02666 228 LESELNFYRRYIQDTKS 244 (287)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 45899999999987773
No 21
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=28.02 E-value=39 Score=28.29 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=19.0
Q ss_pred cccccchhhhHHHHHHHHHHHhh
Q 037906 50 CGRADGYILEKELEFYIKNIQRK 72 (80)
Q Consensus 50 ~GraDGyILEkELeFY~kk~~~k 72 (80)
--|+-|++|++||+|+.+-+..-
T Consensus 180 ~~~~aGfLl~KEL~yf~kalenp 202 (416)
T KOG1367|consen 180 PQSAAGFLLQKELDYFAKALENP 202 (416)
T ss_pred chhhhhHHHHHHHHHHHHHHcCC
Confidence 34899999999999998877543
No 22
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=27.47 E-value=35 Score=27.02 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=18.7
Q ss_pred hcCceeEEeecCCCccccccchh
Q 037906 35 ASGRLLACLSSPPSHCGRADGYI 57 (80)
Q Consensus 35 ~~GrllA~IsSRPGQ~GraDGyI 57 (80)
..| |.|.|.||||..+-+|+-.
T Consensus 215 ~aG-l~a~l~~rPgna~l~dd~~ 236 (254)
T KOG2630|consen 215 KAG-LQAGLVSRPGNAPLPDDAK 236 (254)
T ss_pred hcc-cceeeeecCCCCCCCcccc
Confidence 345 9999999999999999765
No 23
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=25.97 E-value=97 Score=18.98 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=25.6
Q ss_pred hHHHHHHhcCceeEEeec-CC-Cccccccchhhh
Q 037906 28 PHIEEQFASGRLLACLSS-PP-SHCGRADGYILE 59 (80)
Q Consensus 28 ~~L~eqf~~GrllA~IsS-RP-GQ~GraDGyILE 59 (80)
+.+.+.+.+|++=.+|.. .| ++...-|||.|.
T Consensus 45 ~~i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iR 78 (90)
T smart00851 45 LAILDLIKNGEIDLVINTLYPLGAQPHEDGKALR 78 (90)
T ss_pred HHHHHHhcCCCeEEEEECCCcCcceeccCcHHHH
Confidence 568889999998877765 33 888888999886
No 24
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=25.91 E-value=65 Score=17.28 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=14.7
Q ss_pred cCceeEEeecCCCccc
Q 037906 36 SGRLLACLSSPPSHCG 51 (80)
Q Consensus 36 ~GrllA~IsSRPGQ~G 51 (80)
.|+||++=...-||.|
T Consensus 1 dG~vy~wG~n~~GqLG 16 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLG 16 (51)
T ss_dssp TSEEEEEEEETTSTTS
T ss_pred CCcEEEEECCCCCCCC
Confidence 4899999999999999
No 25
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=23.27 E-value=1.4e+02 Score=18.85 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=24.9
Q ss_pred ChHHHHHHhcCceeEEeecCCCccccccchhhh
Q 037906 27 DPHIEEQFASGRLLACLSSPPSHCGRADGYILE 59 (80)
Q Consensus 27 ~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILE 59 (80)
++.|.+.+..|.+=.+|....+.-...|||.|-
T Consensus 56 ~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iR 88 (110)
T cd01424 56 RPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIR 88 (110)
T ss_pred chhHHHHHHcCCeEEEEECCCCCccCccHHHHH
Confidence 478999999999888887543444567898765
No 26
>CHL00132 psaF photosystem I subunit III; Validated
Probab=23.12 E-value=65 Score=24.46 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=20.7
Q ss_pred hhhhhHHHHHHHHHhcc--CCCCh--HHHHHHhcCc
Q 037906 7 AKKRNHVLRKLEKRKKD--RTLDP--HIEEQFASGR 38 (80)
Q Consensus 7 kk~Sk~~~kK~~~R~k~--~kv~~--~L~eqf~~Gr 38 (80)
.++-+...++++.|.+. ..-+| +|+.|+.+++
T Consensus 39 ~kR~~~~~k~Le~rlk~Y~~~s~p~lal~~qi~~tk 74 (185)
T CHL00132 39 QKRLNNSVKKLENRLAKYEANSPPALALQQQIDKTK 74 (185)
T ss_pred HHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHH
Confidence 45666667788899775 23334 4677777665
No 27
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=22.83 E-value=40 Score=21.39 Aligned_cols=11 Identities=45% Similarity=1.256 Sum_probs=10.1
Q ss_pred HHhcCceeEEe
Q 037906 33 QFASGRLLACL 43 (80)
Q Consensus 33 qf~~GrllA~I 43 (80)
.|.+|+|+-||
T Consensus 30 ef~tgkllVci 40 (60)
T PF04694_consen 30 EFKTGKLLVCI 40 (60)
T ss_pred EEecCcEEEEE
Confidence 48999999999
No 28
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=22.17 E-value=79 Score=19.83 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHH
Q 037906 57 ILEKELEFYIKNIQ 70 (80)
Q Consensus 57 ILEkELeFY~kk~~ 70 (80)
.||+||++|...+.
T Consensus 21 ~leEEL~~yk~~~~ 34 (60)
T PF11461_consen 21 LLEEELAYYKSELL 34 (60)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcccC
Confidence 45699999987553
No 29
>PRK05359 oligoribonuclease; Provisional
Probab=21.79 E-value=78 Score=22.34 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.4
Q ss_pred CCccccccchhhh--HHHHHHHHHHHh
Q 037906 47 PSHCGRADGYILE--KELEFYIKNIQR 71 (80)
Q Consensus 47 PGQ~GraDGyILE--kELeFY~kk~~~ 71 (80)
+.++-||..-|++ .|+.+|...|.+
T Consensus 151 ~~~~HRal~D~~~s~~~~~~~~~~~~~ 177 (181)
T PRK05359 151 KQGTHRALADIRESIAELKYYREHFFK 177 (181)
T ss_pred CcCCcccHHHHHHHHHHHHHHHHHhcc
Confidence 4467899999999 999999998854
No 30
>PF14006 YqzL: YqzL-like protein
Probab=20.21 E-value=50 Score=19.95 Aligned_cols=15 Identities=53% Similarity=0.840 Sum_probs=12.3
Q ss_pred ccccccchhhhHHHH
Q 037906 49 HCGRADGYILEKELE 63 (80)
Q Consensus 49 Q~GraDGyILEkELe 63 (80)
++|..|.|+|=+|++
T Consensus 9 ~TG~i~aYllyke~E 23 (47)
T PF14006_consen 9 QTGSIDAYLLYKELE 23 (47)
T ss_pred hcCCHHHHHHHHHHH
Confidence 689999999987754
Done!