Query 037906
Match_columns 80
No_of_seqs 105 out of 216
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:02:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_I RP19, S14, YS9, 40S rib 100.0 2.6E-38 8.8E-43 233.7 3.7 70 4-73 130-200 (200)
2 2xzm_2 40S ribosomal protein S 100.0 1.5E-37 5.1E-42 230.9 3.4 69 4-73 138-207 (208)
3 2kcp_A 30S ribosomal protein S 99.1 8.4E-12 2.9E-16 83.9 0.4 24 36-61 68-92 (98)
4 2kco_A 30S ribosomal protein S 99.0 1.2E-11 4.1E-16 86.7 -1.6 24 40-63 108-132 (133)
5 3j20_J 30S ribosomal protein S 96.9 0.00024 8.3E-09 49.1 1.1 24 34-59 103-126 (127)
6 3u65_B TP33 protein; tetratric 64.7 1.7 6E-05 31.7 0.6 16 43-58 64-79 (328)
7 3mmg_A Nuclear inclusion prote 49.2 4.5 0.00016 30.2 0.6 21 38-58 139-164 (241)
8 4fqj_A Hemagglutinin; monoclon 46.2 5.2 0.00018 31.0 0.5 15 42-56 196-218 (304)
9 1lvm_A Catalytic domain of the 39.5 7.9 0.00027 28.6 0.6 22 37-58 146-172 (229)
10 1yhn_B RILP, RAB interacting l 29.7 30 0.001 21.5 1.9 13 57-69 21-33 (65)
11 4go6_A HCF N-terminal chain 1; 27.1 9.9 0.00034 22.1 -0.5 9 51-59 31-39 (45)
12 2hal_A Hepatitis A protease 3C 26.5 19 0.00066 25.3 0.8 11 43-53 165-175 (212)
13 4dcd_A Protease 3C, genome pol 24.8 22 0.00074 25.4 0.8 10 44-53 148-157 (190)
14 1n57_A Chaperone HSP31, protei 22.8 52 0.0018 23.6 2.5 32 26-58 167-201 (291)
15 2b0f_A Picornain 3C (protease 22.3 26 0.00089 24.6 0.8 11 43-53 139-149 (182)
16 3tq7_B Microtubule-associated 21.2 54 0.0018 20.6 2.0 14 58-71 20-33 (82)
17 2bhg_A Foot-and-mouth disease 21.0 29 0.00098 24.4 0.8 11 43-53 157-167 (209)
18 3qzr_A 3C protein; chymotrypsi 20.8 29 0.00099 24.7 0.8 10 44-53 145-154 (187)
19 1cqq_A Type 2 rhinovirus 3C pr 20.6 30 0.001 24.0 0.8 11 43-53 140-150 (180)
No 1
>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I
Probab=100.00 E-value=2.6e-38 Score=233.65 Aligned_cols=70 Identities=41% Similarity=0.786 Sum_probs=62.9
Q ss_pred hhhhhhhhHHHHHHHHHhccCCCChHHHHHHhcCceeEEeecCCCccccccchhhh-HHHHHHHHHHHhhh
Q 037906 4 TDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIKNIQRKK 73 (80)
Q Consensus 4 ~~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILE-kELeFY~kk~~~kK 73 (80)
++++++|+++++||++|+++++||++|+|||++||||||||||||||||||||||| +||+||+++|++||
T Consensus 130 ~~~~k~s~~~~~k~~~r~~~~~i~~~leeqf~~GrllA~isSRPGQ~GradGyiLEGkELeFy~kk~~~kk 200 (200)
T 3u5c_I 130 EETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK 200 (200)
T ss_dssp ------CSHHHHHHHHSCSSCCCCHHHHHHHHTTCCEEEECSCHHHHSCCCEEECCHHHHHHHHHHHHTTC
T ss_pred hhhhhhhHHHHHHHHHHHhhCCcCHHHHHHHhhCcEEEEEecCCCCccccceeEEccHHHHHHHHHHhccC
Confidence 45678999999999999999999999999999999999999999999999999999 99999999999875
No 2
>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2
Probab=100.00 E-value=1.5e-37 Score=230.85 Aligned_cols=69 Identities=55% Similarity=0.938 Sum_probs=66.2
Q ss_pred hhhhhhhhHHHHHHHHHhccCCCChHHHHHHhcCceeEEeecCCCccccccchhhh-HHHHHHHHHHHhhh
Q 037906 4 TDEAKKRNHVLRKLEKRKKDRTLDPHIEEQFASGRLLACLSSPPSHCGRADGYILE-KELEFYIKNIQRKK 73 (80)
Q Consensus 4 ~~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILE-kELeFY~kk~~~kK 73 (80)
..++++|+++++|| +|++++++||+|+|||++|||||||+||||||||||||||| +||+||+++|++||
T Consensus 138 ~~~~k~s~~~~kk~-~r~~~~~~~~~l~eqf~~GrllA~isSRPGQ~GradGyiLEGkELeFY~~k~~~kk 207 (208)
T 2xzm_2 138 LGNKEKSRHVQKRV-KRTKAQALEKNIEEQFVSQRILACITSRPGQSGRADGYILEGKELEFYIRKLQSKK 207 (208)
T ss_dssp CCSCCSSTTHHHHH-HHTTTCCCCHHHHHHHHHSEEEEEECSCHHHHSCCEEEECCHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHH-HHhhhccccHHHHHHHhhCcEEEEEecCCCCcccccEEEEechhHHHHHHHHHhcc
Confidence 34678999999999 99999999999999999999999999999999999999999 99999999999987
No 3
>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A
Probab=99.11 E-value=8.4e-12 Score=83.91 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=22.9
Q ss_pred cCceeEEeecCCCccccccchhhh-HH
Q 037906 36 SGRLLACLSSPPSHCGRADGYILE-KE 61 (80)
Q Consensus 36 ~GrllA~IsSRPGQ~GraDGyILE-kE 61 (80)
.|+ |||+|||||+|++|||||| +|
T Consensus 68 ~Gk--A~VTSRPGQdG~vnavlL~g~e 92 (98)
T 2kcp_A 68 LGN--VRVTSRPGQDGVINGVLIRELE 92 (98)
T ss_dssp SSE--EEECSCTTGGGSCEEEEECCSC
T ss_pred CcE--EEEecCCCCccEEEEEEEeccc
Confidence 788 9999999999999999999 76
No 4
>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}
Probab=99.03 E-value=1.2e-11 Score=86.68 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=23.0
Q ss_pred eEEeecCCCccccccchhhh-HHHH
Q 037906 40 LACLSSPPSHCGRADGYILE-KELE 63 (80)
Q Consensus 40 lA~IsSRPGQ~GraDGyILE-kELe 63 (80)
||||+|||||+|++|||||| +||+
T Consensus 108 ~A~VtSRPGQdG~vnavlleg~el~ 132 (133)
T 2kco_A 108 LAVVTSRPGQDGVINAVLLKNESQR 132 (133)
T ss_dssp EEEEEEEECTTSBEEEEECSSCCCC
T ss_pred eEEEecCCCCcceEEEEEEeccccc
Confidence 79999999999999999999 9985
No 5
>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.89 E-value=0.00024 Score=49.08 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.7
Q ss_pred HhcCceeEEeecCCCccccccchhhh
Q 037906 34 FASGRLLACLSSPPSHCGRADGYILE 59 (80)
Q Consensus 34 f~~GrllA~IsSRPGQ~GraDGyILE 59 (80)
..-| .|+|+|||||.|..++++||
T Consensus 103 te~G--~a~vtsrPgqdG~vNavll~ 126 (127)
T 3j20_J 103 TEIG--KAKVTSRPGQDGVVNAILLE 126 (127)
T ss_dssp BSSS--EEEECSCSSSSCCCCEEECC
T ss_pred EcCc--eEEEecCCccCceEEEEEec
Confidence 3445 39999999999999999987
No 6
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=64.67 E-value=1.7 Score=31.74 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=12.6
Q ss_pred eecCCCccccccchhh
Q 037906 43 LSSPPSHCGRADGYIL 58 (80)
Q Consensus 43 IsSRPGQ~GraDGyIL 58 (80)
-.+||||.|.+|..+.
T Consensus 64 ~~~~~~~~G~id~~~~ 79 (328)
T 3u65_B 64 KSSRPGQAAPLDGAVF 79 (328)
T ss_dssp SCSSTTSCCSCSEEEE
T ss_pred hhhccCCCCceeEEEe
Confidence 3469999999997653
No 7
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0
Probab=49.19 E-value=4.5 Score=30.15 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=15.8
Q ss_pred ceeEEeecCCCccccc-----cchhh
Q 037906 38 RLLACLSSPPSHCGRA-----DGYIL 58 (80)
Q Consensus 38 rllA~IsSRPGQ~Gra-----DGyIL 58 (80)
.--=-|++.+|+||-+ ||.|+
T Consensus 139 fWkHwIsT~~G~CGlPlVs~~Dg~IV 164 (241)
T 3mmg_A 139 FWQHWITTKDGQAGSPLVSIIDGNIL 164 (241)
T ss_dssp EEEECBCCCTTCTTCEEEETTTCCEE
T ss_pred EEEEEcCCCCCcCCCeEEEcCCCcEE
Confidence 3444688899999975 88875
No 8
>4fqj_A Hemagglutinin; monoclonal, immunoglobulin, viral protein-immune system COMP; HET: NAG BMA; 2.50A {Influenza b virus}
Probab=46.19 E-value=5.2 Score=31.01 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=11.7
Q ss_pred EeecCC--------Cccccccch
Q 037906 42 CLSSPP--------SHCGRADGY 56 (80)
Q Consensus 42 ~IsSRP--------GQ~GraDGy 56 (80)
-|.+|| ||+||.|=|
T Consensus 196 ~Ig~RP~v~~~~g~GQsGRi~~y 218 (304)
T 4fqj_A 196 QIGSFPDQTEDGGLPQSGRIVVD 218 (304)
T ss_dssp CCSCCCCCCSSCCSCCSCEEEEE
T ss_pred cCCCCCcccccCCCCccceEEEE
Confidence 466799 999998743
No 9
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A
Probab=39.49 E-value=7.9 Score=28.60 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=15.8
Q ss_pred CceeEEeecCCCcccc-----ccchhh
Q 037906 37 GRLLACLSSPPSHCGR-----ADGYIL 58 (80)
Q Consensus 37 GrllA~IsSRPGQ~Gr-----aDGyIL 58 (80)
+.--=-|++.+|+||- -||.|+
T Consensus 146 ~fWkHwIsT~~G~CGlPlVs~~Dg~IV 172 (229)
T 1lvm_A 146 IFWKHWIQTKDGQCGSPLVSTRDGFIV 172 (229)
T ss_dssp TEEEECBCCCTTCTTCEEEETTTCCEE
T ss_pred CEeEEEeeCCCCcCCCcEEECCCCcEE
Confidence 3344458889999996 478775
No 10
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=29.68 E-value=30 Score=21.49 Aligned_cols=13 Identities=23% Similarity=0.807 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHH
Q 037906 57 ILEKELEFYIKNI 69 (80)
Q Consensus 57 ILEkELeFY~kk~ 69 (80)
+|++||++|.+.+
T Consensus 21 ~lqeEL~yY~~e~ 33 (65)
T 1yhn_B 21 LLKEELAYFQREL 33 (65)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 5669999998865
No 11
>4go6_A HCF N-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=27.15 E-value=9.9 Score=22.14 Aligned_cols=9 Identities=44% Similarity=0.892 Sum_probs=7.4
Q ss_pred ccccchhhh
Q 037906 51 GRADGYILE 59 (80)
Q Consensus 51 GraDGyILE 59 (80)
--||+|||+
T Consensus 31 ptA~~YiLQ 39 (45)
T 4go6_A 31 ATADSYLLQ 39 (45)
T ss_dssp TTCSEEEEE
T ss_pred cchheeEEE
Confidence 358999998
No 12
>2hal_A Hepatitis A protease 3C; 3C protease, inhibitor design; HET: BBL; 1.35A {Hepatitis a virus} SCOP: b.47.1.4 PDB: 2h6m_A* 2h9h_A* 2cxv_A* 2a4o_A* 1hav_A 1qa7_A*
Probab=26.49 E-value=19 Score=25.32 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=8.7
Q ss_pred eecCCCccccc
Q 037906 43 LSSPPSHCGRA 53 (80)
Q Consensus 43 IsSRPGQ~Gra 53 (80)
..|+|||||-+
T Consensus 165 ~pT~~G~CGs~ 175 (212)
T 2hal_A 165 GEGLPGMCGGA 175 (212)
T ss_dssp CCCCTTCTTCE
T ss_pred cCCCCCcCCCe
Confidence 36899999964
No 13
>4dcd_A Protease 3C, genome polyprotein; antiviral inhibitors, dipeptidyl inhib hydrolase-hydrolase inhibitor complex; HET: K36; 1.69A {Human poliovirus 1} PDB: 1l1n_A
Probab=24.80 E-value=22 Score=25.41 Aligned_cols=10 Identities=20% Similarity=0.670 Sum_probs=7.8
Q ss_pred ecCCCccccc
Q 037906 44 SSPPSHCGRA 53 (80)
Q Consensus 44 sSRPGQ~Gra 53 (80)
.|+|||||-+
T Consensus 148 pT~~G~CGg~ 157 (190)
T 4dcd_A 148 PTRAGQCGGV 157 (190)
T ss_dssp CCCTTCTTCE
T ss_pred CCCCCccCCE
Confidence 3799999953
No 14
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=22.76 E-value=52 Score=23.61 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=22.2
Q ss_pred CChHHHHHHhcCceeEEeecCCC---ccccccchhh
Q 037906 26 LDPHIEEQFASGRLLACLSSPPS---HCGRADGYIL 58 (80)
Q Consensus 26 v~~~L~eqf~~GrllA~IsSRPG---Q~GraDGyIL 58 (80)
+-..|.++..+|+++|.|+.=|- ..|..|| ||
T Consensus 167 l~~~l~~~~~~gk~VaaIC~Gp~~La~a~~~~G-LL 201 (291)
T 1n57_A 167 VAAALQWAIKNDRFVISLCHGPAAFLALRHGDN-PL 201 (291)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCC-TT
T ss_pred HHHHHHHHHHcCCEEEEECccHHHHHhhcccCc-cC
Confidence 33456778889999999999884 4443345 44
No 15
>2b0f_A Picornain 3C (protease 3C) (P3C); beta barrel, hydrolase-hydrolase inhibitor complex; HET: CA1; NMR {Human rhinovirus 14} PDB: 2in2_A
Probab=22.29 E-value=26 Score=24.64 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=8.7
Q ss_pred eecCCCccccc
Q 037906 43 LSSPPSHCGRA 53 (80)
Q Consensus 43 IsSRPGQ~Gra 53 (80)
-.|+|||||-+
T Consensus 139 ~pTk~G~CGgv 149 (182)
T 2b0f_A 139 YATKTGQCGGV 149 (182)
T ss_dssp SCCCTTCTTCE
T ss_pred cCCCCcccCCe
Confidence 35799999965
No 16
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=21.15 E-value=54 Score=20.65 Aligned_cols=14 Identities=43% Similarity=0.847 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHh
Q 037906 58 LEKELEFYIKNIQR 71 (80)
Q Consensus 58 LEkELeFY~kk~~~ 71 (80)
||+|=+||-.|++.
T Consensus 20 lEkERDFYF~KLRd 33 (82)
T 3tq7_B 20 LEKERDFYFSKLRD 33 (82)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77999999888763
No 17
>2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like cysteine protease, capsid protein, core protein; 1.9A {Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB: 2j92_A 2wv4_A 2wv5_A
Probab=21.02 E-value=29 Score=24.36 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=8.9
Q ss_pred eecCCCccccc
Q 037906 43 LSSPPSHCGRA 53 (80)
Q Consensus 43 IsSRPGQ~Gra 53 (80)
..|+|||||-+
T Consensus 157 ~pT~~G~CGs~ 167 (209)
T 2bhg_A 157 AATRAGYAGGA 167 (209)
T ss_dssp CCCCTTCTTCE
T ss_pred CCCCCCcCCCE
Confidence 46899999965
No 18
>3qzr_A 3C protein; chymotrypsin-fold, beta-ribbon, hydrolysis, nucleus, hydrola hydrolase inhibitor complex; HET: AG7; 1.04A {Human enterovirus 71} SCOP: b.47.1.0 PDB: 3osy_A 3qzq_A* 3r0f_A* 3sjo_A* 3sjk_A 3sji_A* 3sj8_A* 3sj9_A
Probab=20.80 E-value=29 Score=24.67 Aligned_cols=10 Identities=20% Similarity=0.680 Sum_probs=8.2
Q ss_pred ecCCCccccc
Q 037906 44 SSPPSHCGRA 53 (80)
Q Consensus 44 sSRPGQ~Gra 53 (80)
.|++||||-+
T Consensus 145 pTk~G~CGgv 154 (187)
T 3qzr_A 145 PTKAGQCGGV 154 (187)
T ss_dssp CCCTTCTTCE
T ss_pred CCCCCccCCe
Confidence 3899999965
No 19
>1cqq_A Type 2 rhinovirus 3C protease; viral protein, hydrolase; HET: AG7; 1.85A {Human rhinovirus 2} SCOP: b.47.1.4 PDB: 2xya_A*
Probab=20.59 E-value=30 Score=24.00 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=8.5
Q ss_pred eecCCCccccc
Q 037906 43 LSSPPSHCGRA 53 (80)
Q Consensus 43 IsSRPGQ~Gra 53 (80)
-.|+|||||-+
T Consensus 140 ~pT~~G~CGsv 150 (180)
T 1cqq_A 140 YPTKSGYCGGV 150 (180)
T ss_dssp CCCCTTCTTCE
T ss_pred CCCCCCcCCCe
Confidence 35889999864
Done!