Query 037907
Match_columns 265
No_of_seqs 236 out of 755
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:36:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12428 DUF3675: Protein of u 100.0 4.1E-42 8.8E-47 282.1 9.0 117 128-247 1-118 (118)
2 PHA02825 LAP/PHD finger-like p 99.8 1.2E-19 2.5E-24 155.6 6.4 115 72-225 6-121 (162)
3 KOG1609 Protein involved in mR 99.8 1.7E-20 3.7E-25 170.6 0.3 184 74-259 78-269 (323)
4 PHA02862 5L protein; Provision 99.7 1.3E-17 2.8E-22 141.3 3.7 60 75-136 3-62 (156)
5 smart00744 RINGv The RING-vari 99.7 2.1E-17 4.6E-22 116.5 3.0 48 76-123 1-49 (49)
6 PF12906 RINGv: RING-variant d 99.6 3.7E-17 8E-22 114.3 1.0 46 77-122 1-47 (47)
7 KOG3053 Uncharacterized conser 99.4 9.5E-14 2.1E-18 127.2 4.4 63 71-133 17-88 (293)
8 COG5183 SSM4 Protein involved 99.4 8.1E-14 1.8E-18 142.5 4.0 69 72-140 10-81 (1175)
9 PF13639 zf-RING_2: Ring finge 97.4 4.2E-05 9.1E-10 51.7 0.7 42 75-123 1-44 (44)
10 KOG4628 Predicted E3 ubiquitin 97.1 0.00037 8E-09 67.1 3.4 52 75-132 230-283 (348)
11 cd00162 RING RING-finger (Real 96.8 0.001 2.2E-08 42.9 2.6 44 76-125 1-44 (45)
12 PHA02929 N1R/p28-like protein; 96.7 0.0013 2.8E-08 60.5 3.1 48 73-127 173-227 (238)
13 PF12861 zf-Apc11: Anaphase-pr 96.4 0.0039 8.5E-08 49.1 3.8 51 74-128 21-83 (85)
14 COG5540 RING-finger-containing 96.2 0.0036 7.9E-08 59.7 2.9 47 73-126 322-371 (374)
15 PF12678 zf-rbx1: RING-H2 zinc 96.1 0.003 6.5E-08 47.6 1.8 43 74-123 19-73 (73)
16 smart00184 RING Ring finger. E 96.1 0.0055 1.2E-07 38.0 2.6 39 77-122 1-39 (39)
17 PF00097 zf-C3HC4: Zinc finger 96.1 0.0037 8E-08 41.2 1.8 41 77-122 1-41 (41)
18 PF13920 zf-C3HC4_3: Zinc fing 96.1 0.004 8.6E-08 43.2 2.0 46 74-127 2-48 (50)
19 PLN03208 E3 ubiquitin-protein 95.8 0.0073 1.6E-07 54.1 3.0 49 73-127 17-79 (193)
20 COG5243 HRD1 HRD ubiquitin lig 95.8 0.013 2.8E-07 57.3 4.9 49 72-127 285-345 (491)
21 PF11793 FANCL_C: FANCL C-term 95.3 0.0047 1E-07 46.4 0.0 51 74-127 2-66 (70)
22 KOG0802 E3 ubiquitin ligase [P 94.8 0.019 4.1E-07 58.0 2.6 49 71-126 288-340 (543)
23 KOG0828 Predicted E3 ubiquitin 94.4 0.029 6.2E-07 56.6 2.9 51 71-127 568-634 (636)
24 PHA02926 zinc finger-like prot 94.1 0.044 9.5E-07 50.4 3.1 51 72-127 168-230 (242)
25 PF13923 zf-C3HC4_2: Zinc fing 93.8 0.031 6.7E-07 36.8 1.2 39 77-122 1-39 (39)
26 KOG1493 Anaphase-promoting com 93.2 0.044 9.5E-07 42.7 1.4 49 76-128 22-82 (84)
27 COG5219 Uncharacterized conser 92.9 0.033 7.1E-07 60.0 0.3 54 71-127 1466-1523(1525)
28 smart00504 Ubox Modified RING 92.9 0.11 2.3E-06 36.8 2.9 44 76-127 3-46 (63)
29 KOG0317 Predicted E3 ubiquitin 92.8 0.13 2.9E-06 48.6 4.3 52 70-129 235-286 (293)
30 PF14634 zf-RING_5: zinc-RING 91.1 0.18 3.8E-06 34.2 2.2 42 76-124 1-44 (44)
31 KOG0823 Predicted E3 ubiquitin 90.7 0.23 4.9E-06 45.7 3.2 50 72-127 45-95 (230)
32 KOG0827 Predicted E3 ubiquitin 89.6 0.28 6.1E-06 48.4 3.0 45 74-123 4-52 (465)
33 TIGR00599 rad18 DNA repair pro 87.7 0.38 8.2E-06 47.5 2.5 49 71-127 23-71 (397)
34 COG5194 APC11 Component of SCF 87.6 0.38 8.3E-06 37.9 2.0 26 100-127 56-81 (88)
35 KOG0804 Cytoplasmic Zn-finger 86.7 0.28 6E-06 49.1 0.9 50 67-125 168-220 (493)
36 PF14570 zf-RING_4: RING/Ubox 85.7 0.58 1.3E-05 33.2 1.9 45 77-127 1-48 (48)
37 PF05883 Baculo_RING: Baculovi 82.4 0.72 1.6E-05 39.3 1.5 39 74-114 26-69 (134)
38 PF05290 Baculo_IE-1: Baculovi 81.6 1.2 2.5E-05 38.2 2.5 55 73-128 79-133 (140)
39 KOG1785 Tyrosine kinase negati 81.2 0.77 1.7E-05 45.8 1.4 48 74-127 369-416 (563)
40 KOG1734 Predicted RING-contain 75.8 0.96 2.1E-05 43.0 0.3 52 71-127 221-281 (328)
41 KOG2930 SCF ubiquitin ligase, 69.6 3.7 7.9E-05 33.9 2.2 26 100-127 83-108 (114)
42 KOG4445 Uncharacterized conser 68.7 1.9 4E-05 41.6 0.4 60 63-127 104-186 (368)
43 PF15227 zf-C3HC4_4: zinc fing 67.2 3 6.5E-05 28.2 1.1 40 77-122 1-42 (42)
44 PF13445 zf-RING_UBOX: RING-ty 65.1 3.7 8E-05 28.2 1.2 39 77-120 1-43 (43)
45 PLN02189 cellulose synthase 64.7 5.9 0.00013 43.6 3.3 51 73-127 33-87 (1040)
46 PLN02436 cellulose synthase A 63.9 6.2 0.00014 43.6 3.3 51 73-127 35-89 (1094)
47 KOG2177 Predicted E3 ubiquitin 63.0 3.5 7.7E-05 35.2 1.0 46 71-124 10-55 (386)
48 TIGR00570 cdk7 CDK-activating 62.7 6.9 0.00015 37.6 3.0 49 75-129 4-56 (309)
49 KOG0825 PHD Zn-finger protein 61.9 2.2 4.7E-05 45.8 -0.5 26 100-127 146-171 (1134)
50 KOG0320 Predicted E3 ubiquitin 61.2 18 0.0004 32.4 5.2 95 24-125 77-176 (187)
51 KOG1645 RING-finger-containing 59.9 6.2 0.00013 39.5 2.2 48 74-125 4-54 (463)
52 KOG1002 Nucleotide excision re 57.9 7 0.00015 40.5 2.2 57 71-133 533-592 (791)
53 PF10272 Tmpp129: Putative tra 55.7 10 0.00023 37.1 3.0 35 90-127 306-351 (358)
54 PF08746 zf-RING-like: RING-li 55.5 6.9 0.00015 26.7 1.2 22 101-122 22-43 (43)
55 COG5432 RAD18 RING-finger-cont 54.4 6 0.00013 38.2 1.1 48 72-127 23-70 (391)
56 PF10367 Vps39_2: Vacuolar sor 54.2 3.7 8.1E-05 31.5 -0.3 34 71-109 75-109 (109)
57 KOG4265 Predicted E3 ubiquitin 51.7 10 0.00023 37.0 2.2 53 72-131 288-340 (349)
58 PF04564 U-box: U-box domain; 50.1 10 0.00022 28.2 1.6 46 75-127 5-50 (73)
59 PF14569 zf-UDP: Zinc-binding 49.7 25 0.00054 27.6 3.6 54 72-128 7-63 (80)
60 KOG0287 Postreplication repair 48.9 7.1 0.00015 38.4 0.6 47 73-127 22-68 (442)
61 PF06210 DUF1003: Protein of u 47.7 74 0.0016 26.0 6.3 47 194-243 7-55 (108)
62 KOG1039 Predicted E3 ubiquitin 47.6 13 0.00027 36.3 2.1 49 72-125 159-219 (344)
63 PF11874 DUF3394: Domain of un 41.4 18 0.00038 32.4 1.9 21 237-257 163-183 (183)
64 PLN02638 cellulose synthase A 37.5 27 0.00059 38.8 2.9 52 73-127 16-70 (1079)
65 KOG1952 Transcription factor N 36.4 36 0.00079 37.1 3.6 52 72-127 189-247 (950)
66 smart00249 PHD PHD zinc finger 35.8 11 0.00024 24.0 -0.2 28 77-107 2-29 (47)
67 PLN02195 cellulose synthase A 35.7 29 0.00063 38.2 2.8 51 74-127 6-59 (977)
68 PF00301 Rubredoxin: Rubredoxi 34.4 19 0.00042 25.3 0.8 35 117-151 2-36 (47)
69 cd00730 rubredoxin Rubredoxin; 33.8 33 0.00072 24.3 2.0 17 117-133 2-18 (50)
70 COG4420 Predicted membrane pro 33.3 1.5E+02 0.0033 26.8 6.4 50 192-243 59-110 (191)
71 KOG2879 Predicted E3 ubiquitin 32.0 43 0.00093 32.1 2.9 56 67-127 232-287 (298)
72 PF09788 Tmemb_55A: Transmembr 30.8 79 0.0017 29.8 4.4 62 184-247 188-249 (256)
73 KOG0802 E3 ubiquitin ligase [P 29.7 42 0.0009 34.2 2.7 47 71-129 476-522 (543)
74 smart00782 PhnA_Zn_Ribbon PhnA 29.3 41 0.00089 23.7 1.8 24 114-137 5-29 (47)
75 KOG3899 Uncharacterized conser 29.3 38 0.00082 32.9 2.1 28 100-127 327-365 (381)
76 KOG1941 Acetylcholine receptor 27.3 29 0.00062 34.9 1.0 47 73-124 364-413 (518)
77 PF13894 zf-C2H2_4: C2H2-type 26.5 27 0.00057 19.2 0.4 10 118-127 2-11 (24)
78 PF05191 ADK_lid: Adenylate ki 26.4 27 0.00059 23.1 0.5 18 117-134 2-19 (36)
79 PLN02400 cellulose synthase 25.4 55 0.0012 36.5 2.8 52 73-127 35-89 (1085)
80 PF00096 zf-C2H2: Zinc finger, 25.1 17 0.00037 20.5 -0.6 12 118-129 2-13 (23)
81 COG5574 PEX10 RING-finger-cont 24.8 99 0.0021 29.4 4.0 49 72-127 213-262 (271)
82 PF10571 UPF0547: Uncharacteri 24.7 36 0.00078 21.0 0.7 13 115-127 13-25 (26)
83 KOG1428 Inhibitor of type V ad 24.2 72 0.0016 37.6 3.3 54 71-127 3483-3544(3738)
84 PF07800 DUF1644: Protein of u 24.2 94 0.002 27.4 3.5 38 74-113 2-48 (162)
85 KOG2164 Predicted E3 ubiquitin 24.1 62 0.0013 33.3 2.7 49 74-128 186-237 (513)
86 PRK11877 psaI photosystem I re 23.9 1.1E+02 0.0023 21.0 2.9 33 217-251 4-36 (38)
87 COG2322 Predicted membrane pro 23.0 2.5E+02 0.0054 25.2 5.9 58 192-249 84-144 (177)
88 PF05129 Elf1: Transcription e 22.9 20 0.00043 27.7 -0.8 32 114-152 44-75 (81)
89 KOG4692 Predicted E3 ubiquitin 22.6 69 0.0015 31.9 2.6 49 71-127 419-467 (489)
90 PF06937 EURL: EURL protein; 22.6 87 0.0019 29.9 3.2 38 71-113 27-68 (285)
91 PF05210 Sprouty: Sprouty prot 22.5 52 0.0011 27.1 1.5 22 87-113 55-77 (108)
92 COG5236 Uncharacterized conser 21.5 91 0.002 31.1 3.2 51 71-127 58-108 (493)
93 COG1773 Rubredoxin [Energy pro 20.5 73 0.0016 23.3 1.8 35 116-151 3-38 (55)
94 KOG0956 PHD finger protein AF1 20.3 62 0.0013 34.8 1.9 56 72-127 115-182 (900)
95 KOG0824 Predicted E3 ubiquitin 20.2 82 0.0018 30.5 2.5 47 74-129 7-55 (324)
No 1
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=100.00 E-value=4.1e-42 Score=282.06 Aligned_cols=117 Identities=48% Similarity=0.831 Sum_probs=113.2
Q ss_pred ccccCCCCCCCCchhhhhhhcccC-ccccccchhHHHHHHHHHhhhccccchhhhcCCCchHHHHHHHHHHHHHHHHHHH
Q 037907 128 PNYSLPPARSNSDVMAIDIRQAWG-PHIDLRDSHLLALAAAERQFLQSEYEDYAVANTSSIACLRSIALILLMVWLMRQV 206 (265)
Q Consensus 128 ~~y~~~p~r~~~~~~~~~~~~~W~-~~~dl~~~~~la~~~~e~q~l~s~~~~~~~~~~~~~~ccRs~aii~m~lLllRh~ 206 (265)
|+|++||++.+++++++++|++|+ .+.|+++++++|++.+|+|++++||++|+.+|++|++||||+|||||+||||||+
T Consensus 1 PgYTaPp~~~~~~~~~i~ir~~we~~~~d~~~~~~~a~~~ae~~~l~~~y~e~~~~~~~~a~~CRsvAli~m~LLllRha 80 (118)
T PF12428_consen 1 PGYTAPPKKFQPGETAIDIRGNWEISRRDLRDPRFLAMAAAERQFLESEYDEYAASNTRGAACCRSVALIFMVLLLLRHA 80 (118)
T ss_pred CCCCCCCCCCCcCccceEecCCccccccCccchhhhhhhhhhhhccccccccccccCCCceeHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccchhhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 037907 207 LIVTRDSGMVQESSTFFSFQVSLLQFAGFFLPCYVMARSWY 247 (265)
Q Consensus 207 l~v~~~~~~~~~~~~~f~~~l~lLRaaGilLP~Yim~~ai~ 247 (265)
+++++ +|+|+|+|++|+ +++|||+|||||||||+|+|+
T Consensus 81 l~l~~-~~~~~~s~~lft--l~~LRaaGilLP~Yim~rais 118 (118)
T PF12428_consen 81 LALVT-GGAEDYSFTLFT--LLLLRAAGILLPCYIMARAIS 118 (118)
T ss_pred HHHhc-CCcccccHHHHH--HHHHHHHHHHHHHHHHHhccC
Confidence 99998 699999999987 999999999999999999985
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.79 E-value=1.2e-19 Score=155.61 Aligned_cols=115 Identities=20% Similarity=0.400 Sum_probs=83.0
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccccccCCCCCCCCchhhhhhhcccC
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPNYSLPPARSNSDVMAIDIRQAWG 151 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~~~p~r~~~~~~~~~~~~~W~ 151 (265)
...+.||||+++++ .+..||+|+||+||||++||++|++.+++..||+|+++|......+|.+ .|.
T Consensus 6 ~~~~~CRIC~~~~~--~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~kpl~------------~W~ 71 (162)
T PHA02825 6 LMDKCCWICKDEYD--VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYKKCT------------KWR 71 (162)
T ss_pred CCCCeeEecCCCCC--CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecCCCc------------ccc
Confidence 34589999998865 4679999999999999999999999999999999999999887777653 465
Q ss_pred -ccccccchhHHHHHHHHHhhhccccchhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchhhhHH
Q 037907 152 -PHIDLRDSHLLALAAAERQFLQSEYEDYAVANTSSIACLRSIALILLMVWLMRQVLIVTRDSGMVQESSTFFSF 225 (265)
Q Consensus 152 -~~~dl~~~~~la~~~~e~q~l~s~~~~~~~~~~~~~~ccRs~aii~m~lLllRh~l~v~~~~~~~~~~~~~f~~ 225 (265)
+..|.+++.++. ...|-.+++| .++|.+--+.=+..+.++++.+.+|.+
T Consensus 72 ~~~~dc~~~~l~~-----------------------~llcl~~~~i--~~~l~~~~i~~~~~~~~~~~~~~~~~~ 121 (162)
T PHA02825 72 CSFRDCHDSAIVN-----------------------SLLCLIVGGI--TYLLVSFNIKKLIESEENSDLIKLFLV 121 (162)
T ss_pred ccCcchhhHHHHH-----------------------HHHHHHHhhh--hheeeehhhhhhhhcccccchhheeee
Confidence 455655543333 2455566665 444555444433344555667777653
No 3
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.78 E-value=1.7e-20 Score=170.56 Aligned_cols=184 Identities=25% Similarity=0.356 Sum_probs=136.9
Q ss_pred cceeeeeeecCCCC---ccccccccCCcCccchHHHHHHHHHhcCCcccccccccccccccCCCCCCCCchhhhhhhccc
Q 037907 74 MVECRICQEEDEVH---NMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPNYSLPPARSNSDVMAIDIRQAW 150 (265)
Q Consensus 74 ~~~CRIC~ee~~~~---~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~~~p~r~~~~~~~~~~~~~W 150 (265)
+..||||+++.+.. .++.||.|+|+++|||+.|+++|+..|++..||+|++.|.+.+..+++............+.|
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVISKVRSGALSER 157 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehhhhhhHhhhhe
Confidence 57999999987533 699999999999999999999999999999999999999988776655443333333333344
Q ss_pred C-c-cccccchhHHHHHHHHHhhhccccchhhhcCCCchHHHHHHH-HHHHHHHHHHHHHHHhcCC-C-CcccchhhhHH
Q 037907 151 G-P-HIDLRDSHLLALAAAERQFLQSEYEDYAVANTSSIACLRSIA-LILLMVWLMRQVLIVTRDS-G-MVQESSTFFSF 225 (265)
Q Consensus 151 ~-~-~~dl~~~~~la~~~~e~q~l~s~~~~~~~~~~~~~~ccRs~a-ii~m~lLllRh~l~v~~~~-~-~~~~~~~~f~~ 225 (265)
. . ...+.....+++......++...+.+.....+..+..+++.+ ++++++.++++.+.+...- + ...+..+.+
T Consensus 158 ~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-- 235 (323)
T KOG1609|consen 158 TLSGMILLKVALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYIFILKSLKV-- 235 (323)
T ss_pred eeehhhhhhhhhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHHHHHHHHHH--
Confidence 3 1 123444555555555666777777777788888888889999 9999999999999877641 1 112333333
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 037907 226 QVSLLQFAGFFLPCYVMARSWYIMQSRRRRQVGL 259 (265)
Q Consensus 226 ~l~lLRaaGilLP~Yim~~ai~~iq~~r~rq~~~ 259 (265)
.+.++|+.+++++.+++++++...|.++.++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (323)
T KOG1609|consen 236 KLVLIRAVIFLLLIKVVLAAVVILQLLLQRLVGY 269 (323)
T ss_pred HHhHhhhhccchhhhhhhhhHHHHHHHHhcceeE
Confidence 2667899999999999998888787777776554
No 4
>PHA02862 5L protein; Provisional
Probab=99.69 E-value=1.3e-17 Score=141.30 Aligned_cols=60 Identities=25% Similarity=0.598 Sum_probs=53.9
Q ss_pred ceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccccccCCCCC
Q 037907 75 VECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPNYSLPPAR 136 (265)
Q Consensus 75 ~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~~~p~r 136 (265)
+.||||++++++. ..||+|+||+||||++||++|++.+++..||+|+++|....+.+|.+
T Consensus 3 diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~yKpf~ 62 (156)
T PHA02862 3 DICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTYVSFK 62 (156)
T ss_pred CEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEccccHH
Confidence 6899999987654 59999999999999999999999999999999999998777777643
No 5
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.67 E-value=2.1e-17 Score=116.46 Aligned_cols=48 Identities=48% Similarity=1.235 Sum_probs=44.2
Q ss_pred eeeeeee-cCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccc
Q 037907 76 ECRICQE-EDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICN 123 (265)
Q Consensus 76 ~CRIC~e-e~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk 123 (265)
+||||++ ++++++++.||.|+|+++|||++||++|+.++++.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5999998 34567899999999999999999999999999999999996
No 6
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.64 E-value=3.7e-17 Score=114.31 Aligned_cols=46 Identities=46% Similarity=1.240 Sum_probs=37.7
Q ss_pred eeeeeecCCC-CccccccccCCcCccchHHHHHHHHHhcCCcccccc
Q 037907 77 CRICQEEDEV-HNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEIC 122 (265)
Q Consensus 77 CRIC~ee~~~-~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiC 122 (265)
||||++++++ ++|++||.|+|+++|||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 8999998764 469999999999999999999999999999999998
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=9.5e-14 Score=127.17 Aligned_cols=63 Identities=29% Similarity=0.657 Sum_probs=54.4
Q ss_pred ccCcceeeeeeecCCCC---ccccccccCCcCccchHHHHHHHHHhcC------CcccccccccccccccCC
Q 037907 71 LMGMVECRICQEEDEVH---NMEAPCACNGTLKFAHRKCIQRWCNKKG------DITCEICNQIFSPNYSLP 133 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~---~Li~PC~CkGslk~vH~~CL~rW~~~k~------~~~CEiCk~~y~~~y~~~ 133 (265)
.+.++.||||+..++++ .|+.||.|+|+.||||+.||.+|+.+|. ...|..|+.+|...++..
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l 88 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQL 88 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeecccc
Confidence 56678999999887764 4899999999999999999999999973 589999999998766544
No 8
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.42 E-value=8.1e-14 Score=142.50 Aligned_cols=69 Identities=29% Similarity=0.690 Sum_probs=59.0
Q ss_pred cCcceeeeeeecCC-CCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc--ccccCCCCCCCCc
Q 037907 72 MGMVECRICQEEDE-VHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS--PNYSLPPARSNSD 140 (265)
Q Consensus 72 ~~~~~CRIC~ee~~-~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~--~~y~~~p~r~~~~ 140 (265)
.+...||||+.|+. +++|-.||+|+||+||+|++||..|...+++++||+||++|+ ..|+-..|+.-|.
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~~IPf 81 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQIIPF 81 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCcccce
Confidence 34479999998874 789999999999999999999999999999999999999965 5566666666553
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.43 E-value=4.2e-05 Score=51.72 Aligned_cols=42 Identities=38% Similarity=0.956 Sum_probs=31.9
Q ss_pred ceeeeeeecCC--CCccccccccCCcCccchHHHHHHHHHhcCCccccccc
Q 037907 75 VECRICQEEDE--VHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICN 123 (265)
Q Consensus 75 ~~CRIC~ee~~--~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk 123 (265)
++|-||+++.+ +.....||. +..|.+|+++|++.++ +|++|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~~--~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRNN--SCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHSS--B-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhCC--cCCccC
Confidence 36999999853 344566764 8999999999998864 999995
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00037 Score=67.12 Aligned_cols=52 Identities=25% Similarity=0.565 Sum_probs=41.7
Q ss_pred ceeeeeeecCCCC--ccccccccCCcCccchHHHHHHHHHhcCCcccccccccccccccC
Q 037907 75 VECRICQEEDEVH--NMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPNYSL 132 (265)
Q Consensus 75 ~~CRIC~ee~~~~--~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~~ 132 (265)
..|-||+|+...+ --+.||+ +..|..|++.|+... .+.|++||+.-......
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRTDSGS 283 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCCCCCC
Confidence 5999999997643 2379998 889999999999987 56799999975544333
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.81 E-value=0.001 Score=42.93 Aligned_cols=44 Identities=36% Similarity=0.815 Sum_probs=33.7
Q ss_pred eeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccc
Q 037907 76 ECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQI 125 (265)
Q Consensus 76 ~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~ 125 (265)
.|-||++.........||. +..|..|+.+|+.. +...|++|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4788988764333455576 67999999999987 66789999875
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.68 E-value=0.0013 Score=60.50 Aligned_cols=48 Identities=27% Similarity=0.581 Sum_probs=37.0
Q ss_pred CcceeeeeeecCCCC-------ccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 73 GMVECRICQEEDEVH-------NMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~-------~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
...+|-||+++..+. ....||. +..|..|+.+|+.. ..+|++|+.+|.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~--~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKE--KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhc--CCCCCCCCCEee
Confidence 357999999974321 2345675 88999999999875 458999999985
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.39 E-value=0.0039 Score=49.09 Aligned_cols=51 Identities=22% Similarity=0.457 Sum_probs=36.6
Q ss_pred cceeeeeeecCC-----------CCccccccccCCcCccchHHHHHHHHHhc-CCcccccccccccc
Q 037907 74 MVECRICQEEDE-----------VHNMEAPCACNGTLKFAHRKCIQRWCNKK-GDITCEICNQIFSP 128 (265)
Q Consensus 74 ~~~CRIC~ee~~-----------~~~Li~PC~CkGslk~vH~~CL~rW~~~k-~~~~CEiCk~~y~~ 128 (265)
.+.|-||+...+ +-+++ =+.|. +..|..|+.+|++.. .+..|+.|+++|+.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 467778776543 22321 23454 789999999999874 57899999999864
No 14
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0036 Score=59.65 Aligned_cols=47 Identities=26% Similarity=0.574 Sum_probs=38.8
Q ss_pred CcceeeeeeecCC--CCccccccccCCcCccchHHHHHHHHH-hcCCcccccccccc
Q 037907 73 GMVECRICQEEDE--VHNMEAPCACNGTLKFAHRKCIQRWCN-KKGDITCEICNQIF 126 (265)
Q Consensus 73 ~~~~CRIC~ee~~--~~~Li~PC~CkGslk~vH~~CL~rW~~-~k~~~~CEiCk~~y 126 (265)
...+|-||++... +..++.||. +-.|..|+.+|+. .+. .|++|+.+.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~~--~CPvCrt~i 371 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYSN--KCPVCRTAI 371 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhcc--cCCccCCCC
Confidence 3489999998753 456799998 7899999999998 444 899999775
No 15
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.13 E-value=0.003 Score=47.63 Aligned_cols=43 Identities=33% Similarity=0.799 Sum_probs=30.3
Q ss_pred cceeeeeeecCC-----------CCc-cccccccCCcCccchHHHHHHHHHhcCCccccccc
Q 037907 74 MVECRICQEEDE-----------VHN-MEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICN 123 (265)
Q Consensus 74 ~~~CRIC~ee~~-----------~~~-Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk 123 (265)
.+.|-||+++.. +-+ ...+|. +..|..||.+|++.+. +|++|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 456999987642 111 235665 8899999999997765 999996
No 16
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.08 E-value=0.0055 Score=37.97 Aligned_cols=39 Identities=41% Similarity=0.952 Sum_probs=30.2
Q ss_pred eeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccc
Q 037907 77 CRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEIC 122 (265)
Q Consensus 77 CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiC 122 (265)
|.||++.. ......||. +..|..|+.+|++ .+...|++|
T Consensus 1 C~iC~~~~-~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-KDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCC-CCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 67888873 356678877 6789999999998 556678876
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.07 E-value=0.0037 Score=41.18 Aligned_cols=41 Identities=32% Similarity=0.866 Sum_probs=35.0
Q ss_pred eeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccc
Q 037907 77 CRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEIC 122 (265)
Q Consensus 77 CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiC 122 (265)
|.||++...+.....||. +.++..|+.+|++.++...|++|
T Consensus 1 C~iC~~~~~~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 778988876555589998 88999999999998888889987
No 18
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.06 E-value=0.004 Score=43.16 Aligned_cols=46 Identities=28% Similarity=0.607 Sum_probs=36.7
Q ss_pred cceeeeeeecCCCCccccccccCCcCcc-chHHHHHHHHHhcCCccccccccccc
Q 037907 74 MVECRICQEEDEVHNMEAPCACNGTLKF-AHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 74 ~~~CRIC~ee~~~~~Li~PC~CkGslk~-vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
...|.||++... .....||. +. +-..|+.+|.. +...|++|++++.
T Consensus 2 ~~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR-DVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS-SEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCC-ceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 368999999854 46788997 56 89999999999 6779999999864
No 19
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=95.80 E-value=0.0073 Score=54.06 Aligned_cols=49 Identities=22% Similarity=0.649 Sum_probs=39.3
Q ss_pred CcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHh--------------cCCccccccccccc
Q 037907 73 GMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNK--------------KGDITCEICNQIFS 127 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~--------------k~~~~CEiCk~~y~ 127 (265)
+.-+|-||++... .+.+++|. +.....|+.+|+.. ++...|++|+..+.
T Consensus 17 ~~~~CpICld~~~-dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVR-DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCC-CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 4578999998754 46788887 78999999999863 23568999999875
No 20
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.013 Score=57.33 Aligned_cols=49 Identities=27% Similarity=0.712 Sum_probs=38.3
Q ss_pred cCcceeeeeeecC-C-----------CCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 72 MGMVECRICQEED-E-----------VHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~-~-----------~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
.+...|-||.+|- . -.+-..||. +..|-.||+.|+..+. +|+||+.+..
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERqQ--TCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQQ--TCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhcc--CCCcccCccc
Confidence 3457999999982 1 123467898 7899999999998765 8999999843
No 21
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.32 E-value=0.0047 Score=46.39 Aligned_cols=51 Identities=24% Similarity=0.415 Sum_probs=24.2
Q ss_pred cceeeeeeecCC--CCccc---cccccCCcCccchHHHHHHHHHhc--C-------Cccccccccccc
Q 037907 74 MVECRICQEEDE--VHNME---APCACNGTLKFAHRKCIQRWCNKK--G-------DITCEICNQIFS 127 (265)
Q Consensus 74 ~~~CRIC~ee~~--~~~Li---~PC~CkGslk~vH~~CL~rW~~~k--~-------~~~CEiCk~~y~ 127 (265)
+.+|.||++... +.... ....|+ +..|..||.+|+... + ..+|+.|+.+.+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 368999997632 22212 334665 789999999999763 1 246999999875
No 22
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.019 Score=57.98 Aligned_cols=49 Identities=27% Similarity=0.691 Sum_probs=40.1
Q ss_pred ccCcceeeeeeecCCCC----ccccccccCCcCccchHHHHHHHHHhcCCcccccccccc
Q 037907 71 LMGMVECRICQEEDEVH----NMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIF 126 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~----~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y 126 (265)
......|.||+|+.... +-..||. +..|..||++|+.. ..+|++|+..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er--~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFER--QQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHH--hCcCCcchhhh
Confidence 34468999999986543 6678887 89999999999998 55999999954
No 23
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.029 Score=56.63 Aligned_cols=51 Identities=24% Similarity=0.674 Sum_probs=39.4
Q ss_pred ccCcceeeeeeecCC----------------CCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEEDE----------------VHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~----------------~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
.+....|-||...-+ .+.|.+||+ +..|+.||++|.+.-+ ..|++|+.+..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~yk-l~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTYK-LICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhhc-ccCCccCCCCC
Confidence 455689999987532 236788999 7999999999998532 68999998753
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=94.07 E-value=0.044 Score=50.38 Aligned_cols=51 Identities=25% Similarity=0.529 Sum_probs=39.0
Q ss_pred cCcceeeeeeecCC------C--CccccccccCCcCccchHHHHHHHHHhc----CCccccccccccc
Q 037907 72 MGMVECRICQEEDE------V--HNMEAPCACNGTLKFAHRKCIQRWCNKK----GDITCEICNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~~------~--~~Li~PC~CkGslk~vH~~CL~rW~~~k----~~~~CEiCk~~y~ 127 (265)
+.+.+|-||+|.-- + -.+..+|. +.....|+.+|...+ ....|++|+..|.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34589999998631 1 13567877 789999999999864 2567999999986
No 25
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=93.76 E-value=0.031 Score=36.80 Aligned_cols=39 Identities=28% Similarity=0.777 Sum_probs=29.3
Q ss_pred eeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccc
Q 037907 77 CRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEIC 122 (265)
Q Consensus 77 CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiC 122 (265)
|-||++...+.....||. +...+.|+++|++. +.+|++|
T Consensus 1 C~iC~~~~~~~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 678888765422578888 88999999999988 3688887
No 26
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.044 Score=42.74 Aligned_cols=49 Identities=24% Similarity=0.537 Sum_probs=36.1
Q ss_pred eeeeeeecCC-----------CCccccccccCCcCccchHHHHHHHHHhc-CCcccccccccccc
Q 037907 76 ECRICQEEDE-----------VHNMEAPCACNGTLKFAHRKCIQRWCNKK-GDITCEICNQIFSP 128 (265)
Q Consensus 76 ~CRIC~ee~~-----------~~~Li~PC~CkGslk~vH~~CL~rW~~~k-~~~~CEiCk~~y~~ 128 (265)
.|-||..+.+ +=+|+-- .|+ +..|..|+.+|++.+ ....|+.|++.|+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 7888876643 3355433 442 789999999999886 45799999999863
No 27
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.89 E-value=0.033 Score=59.96 Aligned_cols=54 Identities=24% Similarity=0.695 Sum_probs=38.8
Q ss_pred ccCcceeeeeeecCC--CCcc-ccccc-cCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEEDE--VHNM-EAPCA-CNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~--~~~L-i~PC~-CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
-++..+|-||+.--+ +..+ ...|. || .-.|..||-+|+.++++.+|++|+.++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 456689999986432 2222 12232 32 5699999999999999999999998764
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=92.86 E-value=0.11 Score=36.75 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=35.7
Q ss_pred eeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 76 ECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 76 ~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
.|.||.+.-. .++..||. +.+-+.|+.+|+.. ..+|++|++++.
T Consensus 3 ~Cpi~~~~~~-~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMK-DPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCC-CCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 5888888754 37888874 78999999999987 458999998874
No 29
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.13 Score=48.59 Aligned_cols=52 Identities=27% Similarity=0.816 Sum_probs=42.1
Q ss_pred cccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccccc
Q 037907 70 ALMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPN 129 (265)
Q Consensus 70 ~~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~ 129 (265)
.......|-+|+|.-. ++=-+||. +..=-.|++.|+.++.. |++|+..+++.
T Consensus 235 i~~a~~kC~LCLe~~~-~pSaTpCG-----HiFCWsCI~~w~~ek~e--CPlCR~~~~ps 286 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRS-NPSATPCG-----HIFCWSCILEWCSEKAE--CPLCREKFQPS 286 (293)
T ss_pred CCCCCCceEEEecCCC-CCCcCcCc-----chHHHHHHHHHHccccC--CCcccccCCCc
Confidence 3455689999999864 35669998 67778999999999875 99999998754
No 30
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=91.06 E-value=0.18 Score=34.15 Aligned_cols=42 Identities=26% Similarity=0.661 Sum_probs=34.7
Q ss_pred eeeeeeecC--CCCccccccccCCcCccchHHHHHHHHHhcCCcccccccc
Q 037907 76 ECRICQEED--EVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQ 124 (265)
Q Consensus 76 ~CRIC~ee~--~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~ 124 (265)
.|-||++.. +..+++++|. +.+...|+.++. .....|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 377888876 3457899998 889999999999 67789999984
No 31
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=0.23 Score=45.69 Aligned_cols=50 Identities=20% Similarity=0.621 Sum_probs=40.3
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcC-Cccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKG-DITCEICNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~-~~~CEiCk~~y~ 127 (265)
...-.|-||++.-. .+.+++|. +..==-||-+|+..+. ...|++||.+..
T Consensus 45 ~~~FdCNICLd~ak-dPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 45 GGFFDCNICLDLAK-DPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCceeeeeeccccC-CCEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccc
Confidence 44579999999865 48899998 6666789999998874 567799999864
No 32
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.62 E-value=0.28 Score=48.42 Aligned_cols=45 Identities=29% Similarity=0.806 Sum_probs=32.7
Q ss_pred cceeeeeeecCC-CCcc--ccccccCCcCccchHHHHHHHHHhcCC-ccccccc
Q 037907 74 MVECRICQEEDE-VHNM--EAPCACNGTLKFAHRKCIQRWCNKKGD-ITCEICN 123 (265)
Q Consensus 74 ~~~CRIC~ee~~-~~~L--i~PC~CkGslk~vH~~CL~rW~~~k~~-~~CEiCk 123 (265)
..+|.||-+... +.++ +.-|. +..|..||++|+..-.. +.|+||+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 478999944332 2233 34454 67999999999988654 7999999
No 33
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.69 E-value=0.38 Score=47.45 Aligned_cols=49 Identities=20% Similarity=0.464 Sum_probs=39.7
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
......|.||++... .+.+.||. +.....|+.+|+..++ .|++|+..+.
T Consensus 23 Le~~l~C~IC~d~~~-~PvitpCg-----H~FCs~CI~~~l~~~~--~CP~Cr~~~~ 71 (397)
T TIGR00599 23 LDTSLRCHICKDFFD-VPVLTSCS-----HTFCSLCIRRCLSNQP--KCPLCRAEDQ 71 (397)
T ss_pred cccccCCCcCchhhh-CccCCCCC-----CchhHHHHHHHHhCCC--CCCCCCCccc
Confidence 445679999998764 46678987 7888999999997743 8999999875
No 34
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=87.59 E-value=0.38 Score=37.89 Aligned_cols=26 Identities=35% Similarity=0.784 Sum_probs=23.7
Q ss_pred ccchHHHHHHHHHhcCCccccccccccc
Q 037907 100 KFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 100 k~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
+..|..|+.+|+++++ .|+++.++|+
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~ 81 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWV 81 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeE
Confidence 6799999999999966 8999999986
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.69 E-value=0.28 Score=49.14 Aligned_cols=50 Identities=20% Similarity=0.632 Sum_probs=35.4
Q ss_pred ccccccCcceeeeeeecCC---CCccccccccCCcCccchHHHHHHHHHhcCCccccccccc
Q 037907 67 SAAALMGMVECRICQEEDE---VHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQI 125 (265)
Q Consensus 67 s~~~~~~~~~CRIC~ee~~---~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~ 125 (265)
.+....+.+.|-+|+|.-+ .+.+-.+|. +-.|-.|+++|-.. +|++|++.
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~ 220 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYC 220 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhhhh
Confidence 4455788899999998643 344566665 77999999999654 45555543
No 36
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=85.69 E-value=0.58 Score=33.25 Aligned_cols=45 Identities=22% Similarity=0.566 Sum_probs=20.7
Q ss_pred eeeeeecCC-CCccccccccCCcCccchHHHHHHHHHhc--CCccccccccccc
Q 037907 77 CRICQEEDE-VHNMEAPCACNGTLKFAHRKCIQRWCNKK--GDITCEICNQIFS 127 (265)
Q Consensus 77 CRIC~ee~~-~~~Li~PC~CkGslk~vH~~CL~rW~~~k--~~~~CEiCk~~y~ 127 (265)
|.+|.++-+ .+.-..||.|. ++-|+.=|...+ ++..|+-|+.+|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 556776654 23446899995 466766676665 4789999999984
No 37
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=82.41 E-value=0.72 Score=39.29 Aligned_cols=39 Identities=31% Similarity=0.586 Sum_probs=27.8
Q ss_pred cceeeeeeecCC--CCccccccccCCcC---ccchHHHHHHHHHhc
Q 037907 74 MVECRICQEEDE--VHNMEAPCACNGTL---KFAHRKCIQRWCNKK 114 (265)
Q Consensus 74 ~~~CRIC~ee~~--~~~Li~PC~CkGsl---k~vH~~CL~rW~~~k 114 (265)
..+|+||++.-+ +|...-+|. |++ |..|..|++||.+++
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~--g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDG--GTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecC--CeehHHHHHHHHHHHHHHhhc
Confidence 479999998743 355555654 444 458999999996553
No 38
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=81.61 E-value=1.2 Score=38.16 Aligned_cols=55 Identities=22% Similarity=0.483 Sum_probs=45.8
Q ss_pred CcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 73 GMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
..-+|-||+|...+..+..|=.|-|. +.----|.+-|-..+-.-.|++||..|+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 45799999999888889999999884 44555667889888888899999999973
No 39
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=81.18 E-value=0.77 Score=45.75 Aligned_cols=48 Identities=25% Similarity=0.660 Sum_probs=40.0
Q ss_pred cceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 74 MVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 74 ~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
-..|.||-|.+.+ .-+-||. +..-..||..|..+.+...|+.|+.+.+
T Consensus 369 FeLCKICaendKd-vkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAENDKD-VKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhccCCC-ccccccc-----chHHHHHHHhhcccCCCCCCCceeeEec
Confidence 3689999887653 3468997 6778899999999988889999999876
No 40
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.77 E-value=0.96 Score=42.96 Aligned_cols=52 Identities=25% Similarity=0.662 Sum_probs=38.4
Q ss_pred ccCcceeeeeeec-----CCC----CccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEE-----DEV----HNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee-----~~~----~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
-.+...|-+|-.. +++ +.-..-|+ +-.|+.|++-|+-..++.+|+-||.+..
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 3445789999543 222 22344565 7899999999999999999999998864
No 41
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=69.64 E-value=3.7 Score=33.90 Aligned_cols=26 Identities=27% Similarity=0.671 Sum_probs=22.9
Q ss_pred ccchHHHHHHHHHhcCCccccccccccc
Q 037907 100 KFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 100 k~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
+-.|..|+.||++.++ .|++|.+++.
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW~ 108 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEWV 108 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCccee
Confidence 6789999999999876 8999999864
No 42
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=68.72 E-value=1.9 Score=41.62 Aligned_cols=60 Identities=18% Similarity=0.418 Sum_probs=41.9
Q ss_pred CCCCccccccCcceeeeeeecCCCCc--cccccccCCcCccchHHHHHHHHHhc---------------------CCccc
Q 037907 63 CSSSSAAALMGMVECRICQEEDEVHN--MEAPCACNGTLKFAHRKCIQRWCNKK---------------------GDITC 119 (265)
Q Consensus 63 ~~~~s~~~~~~~~~CRIC~ee~~~~~--Li~PC~CkGslk~vH~~CL~rW~~~k---------------------~~~~C 119 (265)
|..-.+......-+|-||+-...+++ .+++|- +|.|-.||.|.+++- -...|
T Consensus 104 ~~e~LT~nn~p~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavc 178 (368)
T KOG4445|consen 104 CSEFLTENNHPNGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVC 178 (368)
T ss_pred HHHHcccCCCCCCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 44444445555678888876654443 578887 899999998887641 24679
Q ss_pred cccccccc
Q 037907 120 EICNQIFS 127 (265)
Q Consensus 120 EiCk~~y~ 127 (265)
++|..+..
T Consensus 179 pVcre~i~ 186 (368)
T KOG4445|consen 179 PVCRERIK 186 (368)
T ss_pred hHhhhhcc
Confidence 99998865
No 43
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=67.22 E-value=3 Score=28.18 Aligned_cols=40 Identities=25% Similarity=0.692 Sum_probs=26.5
Q ss_pred eeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCC--cccccc
Q 037907 77 CRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGD--ITCEIC 122 (265)
Q Consensus 77 CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~--~~CEiC 122 (265)
|-||++-.. .+...+|. +-.=+.||.+|.++.+. ..|++|
T Consensus 1 CpiC~~~~~-~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 567776654 47778887 66778999999987654 588887
No 44
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=65.11 E-value=3.7 Score=28.18 Aligned_cols=39 Identities=31% Similarity=0.734 Sum_probs=21.2
Q ss_pred eeeeeec--CCCCccccccccCCcCccchHHHHHHHHHhc--CCcccc
Q 037907 77 CRICQEE--DEVHNMEAPCACNGTLKFAHRKCIQRWCNKK--GDITCE 120 (265)
Q Consensus 77 CRIC~ee--~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k--~~~~CE 120 (265)
|-||.|- ++..++..||. +-+=++||++|.+.+ +..+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 5567662 22337889987 678899999999976 455663
No 45
>PLN02189 cellulose synthase
Probab=64.67 E-value=5.9 Score=43.59 Aligned_cols=51 Identities=22% Similarity=0.538 Sum_probs=37.5
Q ss_pred CcceeeeeeecC---CCCccccccc-cCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 73 GMVECRICQEED---EVHNMEAPCA-CNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 73 ~~~~CRIC~ee~---~~~~Li~PC~-CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
....|+||-++- .++.+-..|+ |. --|=+.|. ..-.+.|+..|+.||++|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 346999999873 3455667787 63 33788898 3444558899999999998
No 46
>PLN02436 cellulose synthase A
Probab=63.88 E-value=6.2 Score=43.58 Aligned_cols=51 Identities=22% Similarity=0.527 Sum_probs=37.5
Q ss_pred CcceeeeeeecC---CCCccccccc-cCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 73 GMVECRICQEED---EVHNMEAPCA-CNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 73 ~~~~CRIC~ee~---~~~~Li~PC~-CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
....|+||-++- .++.+-..|+ |. --|=+.|. ..-.+.|+..|+.||++|+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECA---FPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 346999999873 3556667777 53 23778898 4444558899999999998
No 47
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.96 E-value=3.5 Score=35.19 Aligned_cols=46 Identities=28% Similarity=0.631 Sum_probs=38.3
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQ 124 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~ 124 (265)
..+...|.||++..... .+.||. +..=+.|+..|.. ....|+.|+.
T Consensus 10 ~~~~~~C~iC~~~~~~p-~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP-VLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC-cccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 45678999999987654 788887 7788899999998 7789999994
No 48
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.70 E-value=6.9 Score=37.62 Aligned_cols=49 Identities=18% Similarity=0.420 Sum_probs=35.9
Q ss_pred ceeeeeeecCCC----CccccccccCCcCccchHHHHHHHHHhcCCccccccccccccc
Q 037907 75 VECRICQEEDEV----HNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPN 129 (265)
Q Consensus 75 ~~CRIC~ee~~~----~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~ 129 (265)
..|-+|..+.-- .-++++|. +-.=..|+.+.+.. +...|+.|+..++.+
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccchh
Confidence 579999986432 23677776 66778999997643 667999999987644
No 49
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=61.94 E-value=2.2 Score=45.78 Aligned_cols=26 Identities=19% Similarity=0.576 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHHhcCCccccccccccc
Q 037907 100 KFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 100 k~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
+|.|..|+..|..... +|.+|+.+|-
T Consensus 146 H~FC~~Ci~sWsR~aq--TCPiDR~EF~ 171 (1134)
T KOG0825|consen 146 HYFCEECVGSWSRCAQ--TCPVDRGEFG 171 (1134)
T ss_pred cccHHHHhhhhhhhcc--cCchhhhhhh
Confidence 4999999999987654 8999999995
No 50
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.19 E-value=18 Score=32.42 Aligned_cols=95 Identities=15% Similarity=0.276 Sum_probs=57.1
Q ss_pred cccccccccccccccccccccc--hhh-hhccccCCCCC-CCCCCCCccccccCcceeeeeeecCCCC-ccccccccCCc
Q 037907 24 ESQAQAQTQTQNATLNSVNVVV--SEQ-EERSNKDCKNG-GEGCSSSSAAALMGMVECRICQEEDEVH-NMEAPCACNGT 98 (265)
Q Consensus 24 ~~~~~~~~~~~~~~l~s~~~~~--~~~-~~~~~~d~~~~-~~~~~~~s~~~~~~~~~CRIC~ee~~~~-~Li~PC~CkGs 98 (265)
+..+.-.++..+..|++++... .+. ...++++-.++ ...+....+...++..-|-||++...+. +..+-|.
T Consensus 77 sRsaRnR~~~~~id~~s~~~n~s~~~r~d~~s~~~~~spp~~~~k~v~~~~~~~~~~CPiCl~~~sek~~vsTkCG---- 152 (187)
T KOG0320|consen 77 SRSARNRSPQDHIDLCSVGSNDSKLPRDDRDSDVTVHSPPNRRDKDVDPLRKEGTYKCPICLDSVSEKVPVSTKCG---- 152 (187)
T ss_pred cccccccCccceeehhccCCcccccccCCCccccccccCCCcccccccccccccccCCCceecchhhccccccccc----
Confidence 3444444555667777765411 111 11111222222 3457777777777889999999987643 3445565
Q ss_pred CccchHHHHHHHHHhcCCccccccccc
Q 037907 99 LKFAHRKCIQRWCNKKGDITCEICNQI 125 (265)
Q Consensus 99 lk~vH~~CL~rW~~~k~~~~CEiCk~~ 125 (265)
+..=.+|++.-++. ..+|++|+..
T Consensus 153 -HvFC~~Cik~alk~--~~~CP~C~kk 176 (187)
T KOG0320|consen 153 -HVFCSQCIKDALKN--TNKCPTCRKK 176 (187)
T ss_pred -hhHHHHHHHHHHHh--CCCCCCcccc
Confidence 56667888776654 5699999974
No 51
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.92 E-value=6.2 Score=39.49 Aligned_cols=48 Identities=25% Similarity=0.699 Sum_probs=36.3
Q ss_pred cceeeeeeecCC---CCccccccccCCcCccchHHHHHHHHHhcCCccccccccc
Q 037907 74 MVECRICQEEDE---VHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQI 125 (265)
Q Consensus 74 ~~~CRIC~ee~~---~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~ 125 (265)
...|-||+++-+ +..++.| .|. +.....|+++|+..+-...|+.|+.+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl-~cg---hlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSL-QCG---HLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeee-ccc---ccccHHHHHHHHhhhhhhhCcccCCh
Confidence 358999998743 3345555 232 67889999999986678899999877
No 52
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=57.90 E-value=7 Score=40.49 Aligned_cols=57 Identities=30% Similarity=0.653 Sum_probs=43.3
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHh---cCCcccccccccccccccCC
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNK---KGDITCEICNQIFSPNYSLP 133 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~---k~~~~CEiCk~~y~~~y~~~ 133 (265)
..+..+|-+|+++.++ ++++-|+ +-.-+.|+..++.. ..+.+|+.|+-......+.|
T Consensus 533 nk~~~~C~lc~d~aed-~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAED-YIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred ccCceeecccCChhhh-hHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 4556899999998653 6788887 56778899988865 45799999998876554433
No 53
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=55.75 E-value=10 Score=37.08 Aligned_cols=35 Identities=23% Similarity=0.738 Sum_probs=27.2
Q ss_pred ccccccCCcCccchHHHHHHHHHhc-----------CCccccccccccc
Q 037907 90 EAPCACNGTLKFAHRKCIQRWCNKK-----------GDITCEICNQIFS 127 (265)
Q Consensus 90 i~PC~CkGslk~vH~~CL~rW~~~k-----------~~~~CEiCk~~y~ 127 (265)
-.+|.|+ -.-=.+|+-||+.++ |+..|+.|+..|-
T Consensus 306 C~~C~CR---PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 306 CQQCYCR---PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred Ccccccc---chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4577776 233578999999875 6789999999985
No 54
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=55.50 E-value=6.9 Score=26.73 Aligned_cols=22 Identities=18% Similarity=0.685 Sum_probs=15.9
Q ss_pred cchHHHHHHHHHhcCCcccccc
Q 037907 101 FAHRKCIQRWCNKKGDITCEIC 122 (265)
Q Consensus 101 ~vH~~CL~rW~~~k~~~~CEiC 122 (265)
-.|..|+++++..+.+.+|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 3999999999999887789877
No 55
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=54.43 E-value=6 Score=38.18 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=37.2
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
.....||||.+--. -+.++||. +-.-.-|+.+.+.+.. .|++|..++.
T Consensus 23 Ds~lrC~IC~~~i~-ip~~TtCg-----HtFCslCIR~hL~~qp--~CP~Cr~~~~ 70 (391)
T COG5432 23 DSMLRCRICDCRIS-IPCETTCG-----HTFCSLCIRRHLGTQP--FCPVCREDPC 70 (391)
T ss_pred hhHHHhhhhhheee-cceecccc-----cchhHHHHHHHhcCCC--CCccccccHH
Confidence 34579999987653 47888887 4566788888888765 7999999875
No 56
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=54.16 E-value=3.7 Score=31.50 Aligned_cols=34 Identities=24% Similarity=0.600 Sum_probs=24.8
Q ss_pred ccCcceeeeeeecCCCCcc-ccccccCCcCccchHHHHHH
Q 037907 71 LMGMVECRICQEEDEVHNM-EAPCACNGTLKFAHRKCIQR 109 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~L-i~PC~CkGslk~vH~~CL~r 109 (265)
..+...|.+|...-..+.+ +.||. +.+|..|++|
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 3445789999987654444 67875 6899999864
No 57
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.70 E-value=10 Score=37.00 Aligned_cols=53 Identities=23% Similarity=0.383 Sum_probs=33.5
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPNYS 131 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~ 131 (265)
...++|=||+.+.-+ .++.||.= -..=..|.+...- ....|+||++++..-..
T Consensus 288 ~~gkeCVIClse~rd-t~vLPCRH----LCLCs~Ca~~Lr~--q~n~CPICRqpi~~ll~ 340 (349)
T KOG4265|consen 288 ESGKECVICLSESRD-TVVLPCRH----LCLCSGCAKSLRY--QTNNCPICRQPIEELLE 340 (349)
T ss_pred cCCCeeEEEecCCcc-eEEecchh----hehhHhHHHHHHH--hhcCCCccccchHhhhe
Confidence 446899999988643 56788761 1122355554442 24589999999864333
No 58
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=50.08 E-value=10 Score=28.15 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=30.4
Q ss_pred ceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 75 VECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 75 ~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
-.|-|+.+--. .+.+.|+. +..-+.|+++|+.. +..+|++|+.+..
T Consensus 5 f~CpIt~~lM~-dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 5 FLCPITGELMR-DPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLS 50 (73)
T ss_dssp GB-TTTSSB-S-SEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-S
T ss_pred cCCcCcCcHhh-CceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCC
Confidence 35666655432 36777755 68899999999998 6679999987764
No 59
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=49.69 E-value=25 Score=27.58 Aligned_cols=54 Identities=19% Similarity=0.380 Sum_probs=21.8
Q ss_pred cCcceeeeeeecC---CCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 72 MGMVECRICQEED---EVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 72 ~~~~~CRIC~ee~---~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
.....|.||-++- ..+.+..-|+=- ---|=+.|.+-=+++ |+..|..|+.+|+.
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC--~fPvCr~CyEYErke-g~q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHEC--AFPVCRPCYEYERKE-GNQVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-------HHHHHHHHHT-S-SB-TTT--B---
T ss_pred cCCcccccccCccccCCCCCEEEEEccc--CCccchhHHHHHhhc-CcccccccCCCccc
Confidence 3457999998763 234444444311 134778887655544 78899999999973
No 60
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=48.86 E-value=7.1 Score=38.39 Aligned_cols=47 Identities=26% Similarity=0.564 Sum_probs=36.9
Q ss_pred CcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 73 GMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
..-.|-||++=.. -++++||. +-.-.-|+...++.+. .|+.|..+|+
T Consensus 22 ~lLRC~IC~eyf~-ip~itpCs-----HtfCSlCIR~~L~~~p--~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-IPMITPCS-----HTFCSLCIRKFLSYKP--QCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhc-Cceecccc-----chHHHHHHHHHhccCC--CCCceecccc
Confidence 3468999998764 48999987 4566778888887755 8999998875
No 61
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=47.74 E-value=74 Score=25.96 Aligned_cols=47 Identities=6% Similarity=0.128 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhcCC--CCcccchhhhHHHHHHHHHhhhhHHHHHHH
Q 037907 194 ALILLMVWLMRQVLIVTRDS--GMVQESSTFFSFQVSLLQFAGFFLPCYVMA 243 (265)
Q Consensus 194 aii~m~lLllRh~l~v~~~~--~~~~~~~~~f~~~l~lLRaaGilLP~Yim~ 243 (265)
.+++++++++|-++.+.... .=|-|||.+.+ ++ |-...+++--.||+
T Consensus 7 i~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLn--l~-lS~~Aa~~ap~Ilm 55 (108)
T PF06210_consen 7 IIIFTVFLAVWILLNILAPPRPAFDPYPFILLN--LV-LSLEAAYQAPLILM 55 (108)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCccHHHHH--HH-HHHHHHHHHHHHHH
Confidence 45556666666666665432 23567777665 44 44444444444444
No 62
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.57 E-value=13 Score=36.31 Aligned_cols=49 Identities=22% Similarity=0.517 Sum_probs=34.8
Q ss_pred cCcceeeeeeecCCCCc-----c-c-cccccCCcCccchHHHHHHHHHhcC-----Cccccccccc
Q 037907 72 MGMVECRICQEEDEVHN-----M-E-APCACNGTLKFAHRKCIQRWCNKKG-----DITCEICNQI 125 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~-----L-i-~PC~CkGslk~vH~~CL~rW~~~k~-----~~~CEiCk~~ 125 (265)
...+.|=||++...+.. + + .+|. +..=.+|+.+|...+. ...|++|+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~ 219 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVP 219 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCc
Confidence 34689999998754322 2 3 3465 4556788999997765 6899999876
No 63
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=41.40 E-value=18 Score=32.38 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhc
Q 037907 237 LPCYVMARSWYIMQSRRRRQV 257 (265)
Q Consensus 237 LP~Yim~~ai~~iq~~r~rq~ 257 (265)
+|-..++-.|..+|+||+++|
T Consensus 163 iPAlLLL~lv~~lQrRR~~~~ 183 (183)
T PF11874_consen 163 IPALLLLGLVAWLQRRRRRKQ 183 (183)
T ss_pred HHHHHHHHHHHHHhhhhccCC
Confidence 477788888899999998764
No 64
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=37.51 E-value=27 Score=38.81 Aligned_cols=52 Identities=21% Similarity=0.438 Sum_probs=33.0
Q ss_pred CcceeeeeeecCC---CCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 73 GMVECRICQEEDE---VHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 73 ~~~~CRIC~ee~~---~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
....|+||-++-. ++.+-.-|+=.| --|=+.|.+- =..-|+..|+.||++|+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~--FPVCrpCYEY-Er~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA--FPVCRPCYEY-ERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC--Cccccchhhh-hhhcCCccCCccCCchh
Confidence 3469999988732 344433343111 2366788733 23348899999999998
No 65
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=36.41 E-value=36 Score=37.06 Aligned_cols=52 Identities=23% Similarity=0.595 Sum_probs=39.2
Q ss_pred cCcceeeeeeecCC--CCccccccccCCcCccchHHHHHHHHHhc-----CCccccccccccc
Q 037907 72 MGMVECRICQEEDE--VHNMEAPCACNGTLKFAHRKCIQRWCNKK-----GDITCEICNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~~--~~~Li~PC~CkGslk~vH~~CL~rW~~~k-----~~~~CEiCk~~y~ 127 (265)
....+|-||.+.-. ...| +|+.-.+..|..|+++|-..+ +.++|+-|++.++
T Consensus 189 ~~~yeCmIC~e~I~~t~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 44589999999854 3344 344445789999999998763 4799999997765
No 66
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PLN02195 cellulose synthase A
Probab=35.75 E-value=29 Score=38.20 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=32.3
Q ss_pred cceeeeeeecCC---CCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 74 MVECRICQEEDE---VHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 74 ~~~CRIC~ee~~---~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
...|+||-++-+ .+.+-.-|+=. ---|=+.|.+ .=..-|+..|+.||.+|+
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC--~~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHEC--SYPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccC--CCccccchhh-hhhhcCCccCCccCCccc
Confidence 468999988632 33333334311 1237778873 333348899999999998
No 68
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=34.37 E-value=19 Score=25.27 Aligned_cols=35 Identities=17% Similarity=0.471 Sum_probs=18.2
Q ss_pred cccccccccccccccCCCCCCCCchhhhhhhcccC
Q 037907 117 ITCEICNQIFSPNYSLPPARSNSDVMAIDIRQAWG 151 (265)
Q Consensus 117 ~~CEiCk~~y~~~y~~~p~r~~~~~~~~~~~~~W~ 151 (265)
..|.+|++.|.++..-+.....++..=.++.++|.
T Consensus 2 y~C~~CgyvYd~~~Gd~~~~i~pGt~F~~Lp~~w~ 36 (47)
T PF00301_consen 2 YQCPVCGYVYDPEKGDPENGIPPGTPFEDLPDDWV 36 (47)
T ss_dssp EEETTTSBEEETTTBBGGGTB-TT--GGGS-TT-B
T ss_pred cCCCCCCEEEcCCcCCcccCcCCCCCHHHCCCCCc
Confidence 47999999998766544332233322233445564
No 69
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=33.77 E-value=33 Score=24.34 Aligned_cols=17 Identities=35% Similarity=0.852 Sum_probs=13.1
Q ss_pred cccccccccccccccCC
Q 037907 117 ITCEICNQIFSPNYSLP 133 (265)
Q Consensus 117 ~~CEiCk~~y~~~y~~~ 133 (265)
..|.+|++.|.++..-+
T Consensus 2 y~C~~CgyiYd~~~Gd~ 18 (50)
T cd00730 2 YECRICGYIYDPAEGDP 18 (50)
T ss_pred cCCCCCCeEECCCCCCc
Confidence 47999999998765443
No 70
>COG4420 Predicted membrane protein [Function unknown]
Probab=33.27 E-value=1.5e+02 Score=26.82 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--CCCcccchhhhHHHHHHHHHhhhhHHHHHHH
Q 037907 192 SIALILLMVWLMRQVLIVTRD--SGMVQESSTFFSFQVSLLQFAGFFLPCYVMA 243 (265)
Q Consensus 192 s~aii~m~lLllRh~l~v~~~--~~~~~~~~~~f~~~l~lLRaaGilLP~Yim~ 243 (265)
.+.+.|.++|++|-.+.+... -.-+.|||.+.. |++-=.|.|--|+..|.
T Consensus 59 ~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~Ln--LllS~~AaiqAp~IlmS 110 (191)
T COG4420 59 AFILTFTLLLLLWIVLNLFLVPGLAWDPYPFILLN--LLLSTLAAIQAPLILMS 110 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcCCCccHHHHH--HHHHHHHHHHHhHHHHH
Confidence 345677777888888877653 234577776665 66555666666665543
No 71
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.95 E-value=43 Score=32.06 Aligned_cols=56 Identities=20% Similarity=0.410 Sum_probs=40.5
Q ss_pred ccccccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 67 SAAALMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 67 s~~~~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
+++......+|-+|.+...---.+.||. +..=..|+..=+......+|+.|+.+-.
T Consensus 232 sss~~t~~~~C~~Cg~~PtiP~~~~~C~-----HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 232 SSSTGTSDTECPVCGEPPTIPHVIGKCG-----HIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccccCCceeeccCCCCCCCeeecccc-----ceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3344556689999988765333467776 4566778877777777789999998865
No 72
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=30.84 E-value=79 Score=29.82 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=37.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchhhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 037907 184 TSSIACLRSIALILLMVWLMRQVLIVTRDSGMVQESSTFFSFQVSLLQFAGFFLPCYVMARSWY 247 (265)
Q Consensus 184 ~~~~~ccRs~aii~m~lLllRh~l~v~~~~~~~~~~~~~f~~~l~lLRaaGilLP~Yim~~ai~ 247 (265)
+-|-.|.|.=+|+|.+|-++=-++.+...-|+-+++...-- ++++=+..||+-++.++|++.
T Consensus 188 SVG~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~g--iY~~wv~~~l~a~~~~~rs~y 249 (256)
T PF09788_consen 188 SVGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGG--IYVSWVGLFLIALICLIRSIY 249 (256)
T ss_pred cccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCc--EeHHHHHHHHHHHHHHHHhhe
Confidence 33556777777777777666666665554466554443311 334444557777777888764
No 73
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.74 E-value=42 Score=34.17 Aligned_cols=47 Identities=23% Similarity=0.649 Sum_probs=35.6
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPN 129 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~ 129 (265)
....+.|+||.++. ..-+.||. |..|+.+|...+. .|+.|+....-+
T Consensus 476 ~~~~~~~~~~~~~~--~~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 476 REPNDVCAICYQEM--SARITPCS--------HALCLRKWLYVQE--VCPLCHTYMKED 522 (543)
T ss_pred hcccCcchHHHHHH--Hhcccccc--------chhHHHhhhhhcc--ccCCCchhhhcc
Confidence 45568999998887 33345665 9999999998766 799998776533
No 74
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=29.33 E-value=41 Score=23.67 Aligned_cols=24 Identities=25% Similarity=0.678 Sum_probs=15.8
Q ss_pred cCCccccccccccc-ccccCCCCCC
Q 037907 114 KGDITCEICNQIFS-PNYSLPPARS 137 (265)
Q Consensus 114 k~~~~CEiCk~~y~-~~y~~~p~r~ 137 (265)
+...+||+|+..-. ..|.+||...
T Consensus 5 Rs~~kCELC~a~~~L~vy~Vpp~~~ 29 (47)
T smart00782 5 RCESKCELCGSDSPLVVYAVPPSSD 29 (47)
T ss_pred HcCCcccCcCCCCCceEEecCCCCC
Confidence 34567999998754 3467776443
No 75
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.25 E-value=38 Score=32.87 Aligned_cols=28 Identities=21% Similarity=0.565 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHHhc-----------CCccccccccccc
Q 037907 100 KFAHRKCIQRWCNKK-----------GDITCEICNQIFS 127 (265)
Q Consensus 100 k~vH~~CL~rW~~~k-----------~~~~CEiCk~~y~ 127 (265)
-.--++||.+|+.-+ |+-+|+.|+..|-
T Consensus 327 p~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 327 PLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 345689999999643 6889999999885
No 76
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=27.27 E-value=29 Score=34.91 Aligned_cols=47 Identities=23% Similarity=0.596 Sum_probs=37.0
Q ss_pred CcceeeeeeecC---CCCccccccccCCcCccchHHHHHHHHHhcCCcccccccc
Q 037907 73 GMVECRICQEED---EVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQ 124 (265)
Q Consensus 73 ~~~~CRIC~ee~---~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~ 124 (265)
-+-.|-.|-+.- +++---.||. +..|..|++..+...+++.|+-|+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHH
Confidence 345788886643 2333368998 8999999999999999999999993
No 77
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=26.55 E-value=27 Score=19.18 Aligned_cols=10 Identities=40% Similarity=1.112 Sum_probs=6.8
Q ss_pred cccccccccc
Q 037907 118 TCEICNQIFS 127 (265)
Q Consensus 118 ~CEiCk~~y~ 127 (265)
.|++|+..|.
T Consensus 2 ~C~~C~~~~~ 11 (24)
T PF13894_consen 2 QCPICGKSFR 11 (24)
T ss_dssp E-SSTS-EES
T ss_pred CCcCCCCcCC
Confidence 6999999985
No 78
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=26.44 E-value=27 Score=23.08 Aligned_cols=18 Identities=22% Similarity=0.689 Sum_probs=13.1
Q ss_pred cccccccccccccccCCC
Q 037907 117 ITCEICNQIFSPNYSLPP 134 (265)
Q Consensus 117 ~~CEiCk~~y~~~y~~~p 134 (265)
+.|+.|+..|...+..|.
T Consensus 2 r~C~~Cg~~Yh~~~~pP~ 19 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPPK 19 (36)
T ss_dssp EEETTTTEEEETTTB--S
T ss_pred cCcCCCCCccccccCCCC
Confidence 579999999987666543
No 79
>PLN02400 cellulose synthase
Probab=25.44 E-value=55 Score=36.55 Aligned_cols=52 Identities=21% Similarity=0.473 Sum_probs=32.0
Q ss_pred CcceeeeeeecC---CCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 73 GMVECRICQEED---EVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 73 ~~~~CRIC~ee~---~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
....|+||-++- .++.+-.-|+=.| --|=+-|.+ .=..-|+..|+.||.+|+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa--FPVCRpCYE-YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA--FPVCRPCYE-YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC--Cccccchhh-eecccCCccCcccCCccc
Confidence 346999998873 2344433343111 236667763 222348899999999998
No 80
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=25.09 E-value=17 Score=20.53 Aligned_cols=12 Identities=42% Similarity=1.029 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 037907 118 TCEICNQIFSPN 129 (265)
Q Consensus 118 ~CEiCk~~y~~~ 129 (265)
.|+.|+..|...
T Consensus 2 ~C~~C~~~f~~~ 13 (23)
T PF00096_consen 2 KCPICGKSFSSK 13 (23)
T ss_dssp EETTTTEEESSH
T ss_pred CCCCCCCccCCH
Confidence 699999999643
No 81
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.84 E-value=99 Score=29.38 Aligned_cols=49 Identities=27% Similarity=0.588 Sum_probs=36.7
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHH-HHHhcCCccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQR-WCNKKGDITCEICNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~r-W~~~k~~~~CEiCk~~y~ 127 (265)
.....|-||.+.-+ .+.-+||. +..--.||.. |...+ ...|++|++.-.
T Consensus 213 ~~d~kC~lC~e~~~-~ps~t~Cg-----HlFC~~Cl~~~~t~~k-~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPE-VPSCTPCG-----HLFCLSCLLISWTKKK-YEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccC-Cccccccc-----chhhHHHHHHHHHhhc-cccCchhhhhcc
Confidence 34578999998865 36678887 6777789988 77654 457999998754
No 82
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.69 E-value=36 Score=21.04 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=10.6
Q ss_pred CCccccccccccc
Q 037907 115 GDITCEICNQIFS 127 (265)
Q Consensus 115 ~~~~CEiCk~~y~ 127 (265)
....|+.|++.|.
T Consensus 13 ~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 13 SAKFCPHCGYDFE 25 (26)
T ss_pred hcCcCCCCCCCCc
Confidence 4568999999985
No 83
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=24.24 E-value=72 Score=37.57 Aligned_cols=54 Identities=26% Similarity=0.426 Sum_probs=38.7
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHh-----c---CCccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNK-----K---GDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~-----k---~~~~CEiCk~~y~ 127 (265)
....+.|-||+.|--. ..||---|--+..|-.|..+-+.. + +...|+||+.+..
T Consensus 3483 QD~DDmCmICFTE~L~---AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALS---AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccCceEEEEehhhhC---CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3445899999987532 256665555689999999654443 3 6789999999864
No 84
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=24.15 E-value=94 Score=27.45 Aligned_cols=38 Identities=24% Similarity=0.596 Sum_probs=24.8
Q ss_pred cceeeeeeecCCCC---------ccccccccCCcCccchHHHHHHHHHh
Q 037907 74 MVECRICQEEDEVH---------NMEAPCACNGTLKFAHRKCIQRWCNK 113 (265)
Q Consensus 74 ~~~CRIC~ee~~~~---------~Li~PC~CkGslk~vH~~CL~rW~~~ 113 (265)
...|-||+|---.. .=-.|=-|.. .|-|..||++..+.
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka 48 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKA 48 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCC--ccchhHHHHHHHHH
Confidence 46899999864311 1112223554 48899999999875
No 85
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.12 E-value=62 Score=33.29 Aligned_cols=49 Identities=29% Similarity=0.654 Sum_probs=33.6
Q ss_pred cceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHh---cCCcccccccccccc
Q 037907 74 MVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNK---KGDITCEICNQIFSP 128 (265)
Q Consensus 74 ~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~---k~~~~CEiCk~~y~~ 128 (265)
..+|-||+++.... ..+-|. +..=-.||.+..+. ++...|++|...+.+
T Consensus 186 ~~~CPICL~~~~~p-~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP-VRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc-cccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 57999999987643 223354 44556677665543 467899999988765
No 86
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=23.95 E-value=1.1e+02 Score=20.95 Aligned_cols=33 Identities=9% Similarity=0.250 Sum_probs=23.7
Q ss_pred ccchhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 037907 217 QESSTFFSFQVSLLQFAGFFLPCYVMARSWYIMQS 251 (265)
Q Consensus 217 ~~~~~~f~~~l~lLRaaGilLP~Yim~~ai~~iq~ 251 (265)
+|+-+.+. -++.=..|+++|...|+-...-||+
T Consensus 4 ~~aas~LP--sI~VPlVGlvfPai~Mallf~yIe~ 36 (38)
T PRK11877 4 DFAASWLP--WIFVPLVGWVFPAVFMVLLGRYITA 36 (38)
T ss_pred hHhHHhCc--hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45533333 4457889999999999988877765
No 87
>COG2322 Predicted membrane protein [Function unknown]
Probab=23.03 E-value=2.5e+02 Score=25.15 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCcccchhhhH--HHHHHHHHhhhhHHHHHHHHHHHHH
Q 037907 192 SIALILLMVWLMRQVLIVTRD-SGMVQESSTFFS--FQVSLLQFAGFFLPCYVMARSWYIM 249 (265)
Q Consensus 192 s~aii~m~lLllRh~l~v~~~-~~~~~~~~~~f~--~~l~lLRaaGilLP~Yim~~ai~~i 249 (265)
.++++|.++-|.||.+.=.+. .+++-|....|. ++=..|-++++-|-.|.++++++-.
T Consensus 84 ~l~l~FlvlYltr~~l~~~t~f~~~G~~k~~Y~~iL~~Hi~LA~i~vPLal~al~~a~~~~ 144 (177)
T COG2322 84 TLALVFLVLYLTRHGLGGETAFGGTGIYKGIYFFILITHIILAAINVPLALYALILAWKGL 144 (177)
T ss_pred HHHHHHHHHHHHHHhccccccCCCCeeeehHHHHHHHHHHHHHHHhhhHHHHHHHHHhcch
Confidence 578899999999999887662 344444322221 2234589999999999999999865
No 88
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=22.88 E-value=20 Score=27.75 Aligned_cols=32 Identities=25% Similarity=0.674 Sum_probs=19.1
Q ss_pred cCCcccccccccccccccCCCCCCCCchhhhhhhcccCc
Q 037907 114 KGDITCEICNQIFSPNYSLPPARSNSDVMAIDIRQAWGP 152 (265)
Q Consensus 114 k~~~~CEiCk~~y~~~y~~~p~r~~~~~~~~~~~~~W~~ 152 (265)
.+...|.+|++.|++. ++++ ..++|+...|.+
T Consensus 44 ~~~~~C~~Cg~~~~~~--i~~L-----~epiDVY~~wiD 75 (81)
T PF05129_consen 44 IGILSCRVCGESFQTK--INPL-----SEPIDVYSEWID 75 (81)
T ss_dssp EEEEEESSS--EEEEE----SS-------TTHHHHHHHH
T ss_pred EEEEEecCCCCeEEEc--cCcc-----CcccchhHHHHH
Confidence 4678999999999644 5543 456788888853
No 89
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.65 E-value=69 Score=31.92 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=35.2
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
+.+...|-||+...- +.+..||+ +-.-..|+.+.+.. ...|=.||....
T Consensus 419 ~sEd~lCpICyA~pi-~Avf~PC~-----H~SC~~CI~qHlmN--~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPI-NAVFAPCS-----HRSCYGCITQHLMN--CKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecccc-hhhccCCC-----CchHHHHHHHHHhc--CCeeeEecceee
Confidence 467789999998764 56889998 33445677766654 457889988754
No 90
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=22.64 E-value=87 Score=29.90 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=22.9
Q ss_pred ccCcceeeeeeecCCCC----ccccccccCCcCccchHHHHHHHHHh
Q 037907 71 LMGMVECRICQEEDEVH----NMEAPCACNGTLKFAHRKCIQRWCNK 113 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~----~Li~PC~CkGslk~vH~~CL~rW~~~ 113 (265)
......|.||++-.-++ .|..- -|+ -=|++|+++|-..
T Consensus 27 ~~tLsfChiCfEl~iegvpks~llHt----kSl-RGHrdCFEK~HlI 68 (285)
T PF06937_consen 27 TETLSFCHICFELSIEGVPKSNLLHT----KSL-RGHRDCFEKYHLI 68 (285)
T ss_pred ccceeecceeeccccccCcccccccc----ccc-cchHHHHHHHHHH
Confidence 45567899998865322 22211 111 3599999999653
No 91
>PF05210 Sprouty: Sprouty protein (Spry); InterPro: IPR007875 Sprouty (Spry) and Spred (Sprouty related EVH1 domain) proteins have been identified as inhibitors of the Ras/mitogen-activated protein kinase (MAPK) cascade, a pathway crucial for developmental processes initiated by activation of various receptor tyrosine kinases [1,2]. These proteins share a conserved, C-terminal cysteine-rich region, the SPR domain. This domain has been defined as a novel cytosol to membrane translocation domain [, , , ]. It has been found to be a PtdIns(4,5)P2-binding domain that targets the proteins to a cellular localization that maximizes their inhibitory potential [, ]. It also mediates homodimer formation of these proteins [, ]. The SPR domain can occur in association with the WH1 domain (see IPR000697 from INTERPRO) (located in the N-terminal part of the proteins) in the Spred proteins.; GO: 0007275 multicellular organismal development, 0009966 regulation of signal transduction, 0016020 membrane
Probab=22.55 E-value=52 Score=27.12 Aligned_cols=22 Identities=27% Similarity=0.927 Sum_probs=16.9
Q ss_pred Ccc-ccccccCCcCccchHHHHHHHHHh
Q 037907 87 HNM-EAPCACNGTLKFAHRKCIQRWCNK 113 (265)
Q Consensus 87 ~~L-i~PC~CkGslk~vH~~CL~rW~~~ 113 (265)
+.. ..||+|.. +..|..||..-
T Consensus 55 ~d~ad~PCSC~~-----~~~c~~RW~~L 77 (108)
T PF05210_consen 55 GDCADHPCSCDT-----PSRCCARWLAL 77 (108)
T ss_pred cccCCCccccCC-----ccchHHHHHHH
Confidence 334 45999986 88999999854
No 92
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.54 E-value=91 Score=31.05 Aligned_cols=51 Identities=18% Similarity=0.358 Sum_probs=33.6
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
+++...|-||-+...-. -..||. +-.-..|--|-..--.+..|.+|+.+..
T Consensus 58 DEen~~C~ICA~~~TYs-~~~PC~-----H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 58 DEENMNCQICAGSTTYS-ARYPCG-----HQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccceeEEecCCceEE-EeccCC-----chHHHHHHHHHHHHHhccCCCccccccc
Confidence 55668899998876532 358887 2223345555544446678999999865
No 93
>COG1773 Rubredoxin [Energy production and conversion]
Probab=20.55 E-value=73 Score=23.31 Aligned_cols=35 Identities=17% Similarity=0.489 Sum_probs=20.7
Q ss_pred CcccccccccccccccCCCCCCCCchhh-hhhhcccC
Q 037907 116 DITCEICNQIFSPNYSLPPARSNSDVMA-IDIRQAWG 151 (265)
Q Consensus 116 ~~~CEiCk~~y~~~y~~~p~r~~~~~~~-~~~~~~W~ 151 (265)
..+|.+|++.|.++-.-|.- ..+..+. -++..+|.
T Consensus 3 ~~~C~~CG~vYd~e~Gdp~~-gi~pgT~fedlPd~w~ 38 (55)
T COG1773 3 RWRCSVCGYVYDPEKGDPRC-GIAPGTPFEDLPDDWV 38 (55)
T ss_pred ceEecCCceEeccccCCccC-CCCCCCchhhCCCccC
Confidence 46899999999876554432 2223333 33445664
No 94
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=20.29 E-value=62 Score=34.77 Aligned_cols=56 Identities=29% Similarity=0.497 Sum_probs=38.6
Q ss_pred cCcceeeeeeecCCCCc----cccccccCCcCccchHHHHHHH---HHhc-----CCccccccccccc
Q 037907 72 MGMVECRICQEEDEVHN----MEAPCACNGTLKFAHRKCIQRW---CNKK-----GDITCEICNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~----Li~PC~CkGslk~vH~~CL~rW---~~~k-----~~~~CEiCk~~y~ 127 (265)
+.-+.|.||.|++-++. --.-|.=.|--+-.|-.|.|+- +.+. +...|--|+|.|.
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 44589999999864321 1233554444578999999875 3443 4579999999996
No 95
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.18 E-value=82 Score=30.54 Aligned_cols=47 Identities=23% Similarity=0.465 Sum_probs=29.1
Q ss_pred cceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHh--cCCccccccccccccc
Q 037907 74 MVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNK--KGDITCEICNQIFSPN 129 (265)
Q Consensus 74 ~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~--k~~~~CEiCk~~y~~~ 129 (265)
.++|-||+.... |+-.+..-|.-|..---.. .+...|.+|.+++.-.
T Consensus 7 ~~eC~IC~nt~n---------~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGN---------CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCC---------cCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 479999998743 3333444577774322211 2456799999997633
Done!