Query 037907
Match_columns 265
No_of_seqs 236 out of 755
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 09:03:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 3.2E-19 1.1E-23 129.0 4.0 56 72-128 4-59 (60)
2 2d8s_A Cellular modulator of i 99.7 2.2E-18 7.4E-23 131.1 5.6 66 71-136 12-78 (80)
3 2ep4_A Ring finger protein 24; 98.0 7.9E-06 2.7E-10 58.8 5.7 51 71-128 12-64 (74)
4 2ect_A Ring finger protein 126 97.9 4.3E-06 1.5E-10 60.8 2.6 54 71-131 12-67 (78)
5 1v87_A Deltex protein 2; ring- 97.9 9.4E-06 3.2E-10 63.0 4.3 53 74-131 25-97 (114)
6 2kiz_A E3 ubiquitin-protein li 97.8 1.3E-05 4.6E-10 56.8 3.7 51 71-128 11-63 (69)
7 2ecl_A Ring-box protein 2; RNF 97.7 1.6E-05 5.3E-10 59.2 2.4 27 100-128 50-76 (81)
8 2l0b_A E3 ubiquitin-protein li 97.7 1.8E-05 6.1E-10 59.9 2.7 50 72-128 38-89 (91)
9 2d8t_A Dactylidin, ring finger 97.7 1.6E-05 5.4E-10 57.1 2.3 56 71-134 12-67 (71)
10 2ct2_A Tripartite motif protei 97.7 3.4E-05 1.1E-09 56.8 4.1 53 71-128 12-68 (88)
11 2ea6_A Ring finger protein 4; 97.7 1.6E-05 5.5E-10 55.8 2.2 50 71-127 12-67 (69)
12 2ecm_A Ring finger and CHY zin 97.7 1.3E-05 4.6E-10 54.2 1.7 48 73-127 4-54 (55)
13 2djb_A Polycomb group ring fin 97.7 5.3E-05 1.8E-09 54.4 5.0 56 71-133 12-67 (72)
14 1x4j_A Ring finger protein 38; 97.6 1.6E-05 5.5E-10 57.5 2.0 50 72-128 21-72 (75)
15 2yur_A Retinoblastoma-binding 97.6 4.6E-05 1.6E-09 55.2 4.5 51 71-127 12-63 (74)
16 2ecw_A Tripartite motif-contai 97.6 6.8E-05 2.3E-09 54.4 5.0 52 71-128 16-71 (85)
17 2ct0_A Non-SMC element 1 homol 97.5 9.1E-05 3.1E-09 55.4 4.8 52 71-127 12-63 (74)
18 3ng2_A RNF4, snurf, ring finge 97.5 1.9E-05 6.4E-10 56.0 0.8 50 71-127 7-62 (71)
19 1iym_A EL5; ring-H2 finger, ub 97.5 2.1E-05 7.2E-10 53.3 0.9 49 72-127 3-54 (55)
20 1chc_A Equine herpes virus-1 r 97.5 5.4E-05 1.8E-09 53.4 3.0 48 73-127 4-51 (68)
21 2ecv_A Tripartite motif-contai 97.4 0.00014 4.7E-09 52.7 4.7 52 71-128 16-71 (85)
22 2ecn_A Ring finger protein 141 97.4 5.4E-05 1.9E-09 53.8 1.9 48 72-128 13-60 (70)
23 2csy_A Zinc finger protein 183 97.3 0.00023 7.9E-09 52.0 4.5 49 71-127 12-60 (81)
24 3dpl_R Ring-box protein 1; ubi 97.3 0.00012 4.2E-09 57.7 3.0 48 73-127 36-100 (106)
25 2xeu_A Ring finger protein 4; 97.3 5.6E-05 1.9E-09 52.2 0.9 48 74-128 3-56 (64)
26 2ysl_A Tripartite motif-contai 97.3 0.0001 3.6E-09 52.5 2.1 51 71-127 17-68 (73)
27 3ztg_A E3 ubiquitin-protein li 97.2 0.00018 6.2E-09 53.6 3.4 51 71-127 10-61 (92)
28 2ecy_A TNF receptor-associated 97.2 0.00027 9.3E-09 49.7 3.9 50 72-128 13-62 (66)
29 2egp_A Tripartite motif-contai 97.1 8.4E-05 2.9E-09 53.6 0.5 52 71-128 9-65 (79)
30 1e4u_A Transcriptional repress 97.1 0.00032 1.1E-08 52.3 3.4 55 70-128 7-62 (78)
31 2ecj_A Tripartite motif-contai 97.1 0.00038 1.3E-08 47.2 3.5 46 71-122 12-58 (58)
32 1t1h_A Gspef-atpub14, armadill 96.8 0.00054 1.9E-08 49.5 2.7 51 71-128 5-55 (78)
33 3lrq_A E3 ubiquitin-protein li 96.8 0.00051 1.7E-08 52.6 2.5 50 71-127 19-69 (100)
34 2ysj_A Tripartite motif-contai 96.8 0.00078 2.7E-08 46.8 3.2 46 71-122 17-63 (63)
35 1g25_A CDK-activating kinase a 96.8 0.00041 1.4E-08 48.7 1.7 49 74-128 3-55 (65)
36 4a0k_B E3 ubiquitin-protein li 96.8 0.00023 7.9E-09 57.4 0.4 48 73-127 47-111 (117)
37 3fl2_A E3 ubiquitin-protein li 96.7 0.001 3.5E-08 52.4 3.3 50 72-128 50-99 (124)
38 2ckl_B Ubiquitin ligase protei 96.6 0.00062 2.1E-08 56.2 1.8 50 72-128 52-102 (165)
39 2y43_A E3 ubiquitin-protein li 96.5 0.00093 3.2E-08 50.6 2.0 49 72-128 20-69 (99)
40 1jm7_A BRCA1, breast cancer ty 96.4 0.002 6.9E-08 49.2 3.3 50 73-128 20-70 (112)
41 1z6u_A NP95-like ring finger p 96.3 0.0021 7.2E-08 53.0 3.0 51 72-129 76-126 (150)
42 2ckl_A Polycomb group ring fin 96.3 0.0013 4.5E-08 50.6 1.6 50 71-128 12-62 (108)
43 4ayc_A E3 ubiquitin-protein li 96.2 0.0014 4.8E-08 52.8 1.5 46 74-127 53-98 (138)
44 1rmd_A RAG1; V(D)J recombinati 96.1 0.0022 7.4E-08 49.9 2.0 52 71-129 20-71 (116)
45 4ap4_A E3 ubiquitin ligase RNF 96.0 0.0013 4.4E-08 51.1 0.3 49 73-128 6-60 (133)
46 3hct_A TNF receptor-associated 95.8 0.0044 1.5E-07 48.5 2.8 51 71-128 15-65 (118)
47 2vje_A E3 ubiquitin-protein li 95.6 0.0034 1.2E-07 44.5 1.2 50 71-127 5-56 (64)
48 2y1n_A E3 ubiquitin-protein li 95.5 0.0076 2.6E-07 57.6 3.7 50 75-131 333-382 (389)
49 4ap4_A E3 ubiquitin ligase RNF 95.5 0.0031 1.1E-07 48.9 0.7 50 72-128 70-125 (133)
50 3l11_A E3 ubiquitin-protein li 95.4 0.0016 5.6E-08 50.5 -1.1 50 72-128 13-62 (115)
51 3k1l_B Fancl; UBC, ring, RWD, 94.7 0.008 2.7E-07 57.2 1.1 56 72-130 306-375 (381)
52 3nw0_A Non-structural maintena 94.1 0.032 1.1E-06 49.6 3.5 50 73-128 179-229 (238)
53 4ic3_A E3 ubiquitin-protein li 94.0 0.0072 2.5E-07 43.8 -0.6 46 72-129 22-68 (74)
54 1jm7_B BARD1, BRCA1-associated 93.5 0.0099 3.4E-07 46.4 -0.7 46 72-127 20-66 (117)
55 2vje_B MDM4 protein; proto-onc 93.4 0.025 8.6E-07 39.8 1.3 48 73-127 6-55 (63)
56 2c2l_A CHIP, carboxy terminus 93.3 0.04 1.4E-06 47.7 2.6 49 72-127 206-254 (281)
57 3hcs_A TNF receptor-associated 92.4 0.069 2.4E-06 43.9 2.8 51 71-128 15-65 (170)
58 3knv_A TNF receptor-associated 92.1 0.037 1.3E-06 45.1 0.7 49 71-126 28-76 (141)
59 2kr4_A Ubiquitin conjugation f 91.8 0.14 4.9E-06 37.9 3.7 49 72-128 12-60 (85)
60 1wim_A KIAA0161 protein; ring 91.4 0.084 2.9E-06 39.4 2.1 49 73-126 4-62 (94)
61 2ecg_A Baculoviral IAP repeat- 91.4 0.099 3.4E-06 37.6 2.3 45 73-129 24-69 (75)
62 1bor_A Transcription factor PM 90.6 0.036 1.2E-06 37.9 -0.6 45 72-127 4-48 (56)
63 2ea5_A Cell growth regulator w 90.4 0.2 6.7E-06 35.8 3.2 50 72-133 13-63 (68)
64 2kre_A Ubiquitin conjugation f 90.3 0.12 4.1E-06 39.8 2.0 48 72-127 27-74 (100)
65 2f42_A STIP1 homology and U-bo 89.8 0.18 6.2E-06 43.2 3.0 50 72-128 104-153 (179)
66 2yu4_A E3 SUMO-protein ligase 89.8 0.23 7.7E-06 37.4 3.2 48 72-125 5-59 (94)
67 1wgm_A Ubiquitin conjugation f 85.4 0.49 1.7E-05 36.1 2.7 49 72-127 20-68 (98)
68 3t6p_A Baculoviral IAP repeat- 82.0 0.17 5.8E-06 47.3 -1.4 48 72-131 293-341 (345)
69 2yho_A E3 ubiquitin-protein li 82.0 0.28 9.7E-06 35.9 0.1 48 73-132 17-65 (79)
70 2l43_A N-teminal domain from h 73.7 0.46 1.6E-05 36.0 -0.9 51 72-125 23-75 (88)
71 3htk_C E3 SUMO-protein ligase 71.3 1.3 4.5E-05 40.3 1.3 50 72-127 179-231 (267)
72 2bay_A PRE-mRNA splicing facto 69.2 2.2 7.6E-05 29.8 1.9 46 75-128 4-50 (61)
73 2lri_C Autoimmune regulator; Z 66.6 1.3 4.3E-05 31.9 0.1 47 73-125 11-59 (66)
74 2ko5_A Ring finger protein Z; 62.4 2.9 9.9E-05 32.8 1.5 55 71-134 25-79 (99)
75 2ku3_A Bromodomain-containing 58.8 1.3 4.6E-05 32.2 -1.0 51 72-125 14-66 (71)
76 1f62_A Transcription factor WS 57.8 1.7 5.9E-05 29.0 -0.5 46 76-124 2-49 (51)
77 2k16_A Transcription initiatio 55.7 1.4 4.7E-05 31.8 -1.3 51 73-126 17-69 (75)
78 2ysm_A Myeloid/lymphoid or mix 50.2 1.4 4.8E-05 34.0 -2.2 39 71-112 4-42 (111)
79 1weo_A Cellulose synthase, cat 50.0 28 0.00094 27.0 5.1 53 73-128 15-70 (93)
80 1wep_A PHF8; structural genomi 49.5 13 0.00046 26.9 3.2 54 71-128 9-66 (79)
81 2l5u_A Chromodomain-helicase-D 48.6 3.6 0.00012 28.7 -0.0 48 72-125 9-58 (61)
82 1weu_A Inhibitor of growth fam 46.3 5.1 0.00017 30.7 0.5 50 71-126 33-86 (91)
83 1wev_A Riken cDNA 1110020M19; 41.2 2.1 7E-05 32.2 -2.5 57 73-132 15-79 (88)
84 2yql_A PHD finger protein 21A; 40.9 1 3.4E-05 31.0 -3.9 32 71-108 6-37 (56)
85 2ri7_A Nucleosome-remodeling f 40.4 5.3 0.00018 32.8 -0.3 52 71-126 5-60 (174)
86 2e6r_A Jumonji/ARID domain-con 39.4 1.7 5.8E-05 33.0 -3.2 52 71-125 13-66 (92)
87 3v43_A Histone acetyltransfera 36.7 12 0.00041 28.9 1.2 34 73-109 4-43 (112)
88 1e8j_A Rubredoxin; iron-sulfur 35.4 22 0.00076 24.3 2.3 18 116-133 3-20 (52)
89 4rxn_A Rubredoxin; electron tr 35.0 14 0.00047 25.7 1.2 18 116-133 3-20 (54)
90 1wem_A Death associated transc 35.0 13 0.00043 26.7 1.1 50 74-127 16-72 (76)
91 2lbm_A Transcriptional regulat 31.7 22 0.00077 29.2 2.2 46 72-123 61-115 (142)
92 3u5n_A E3 ubiquitin-protein li 30.5 4 0.00014 34.8 -2.7 52 72-129 5-58 (207)
93 3ql9_A Transcriptional regulat 30.1 31 0.001 27.9 2.7 47 72-124 55-110 (129)
94 1jb0_I Photosystem 1 reaction 29.6 89 0.0031 20.3 4.3 33 217-251 4-36 (38)
95 2jwa_A Receptor tyrosine-prote 29.1 75 0.0026 21.2 4.0 29 227-256 13-41 (44)
96 2vpb_A Hpygo1, pygopus homolog 28.6 18 0.00062 25.6 0.9 34 72-107 6-40 (65)
97 1wen_A Inhibitor of growth fam 27.5 5.8 0.0002 28.7 -1.9 49 71-125 13-65 (71)
98 2l4z_A DNA endonuclease RBBP8, 27.4 23 0.00079 27.6 1.5 52 61-127 48-99 (123)
99 2v3b_B Rubredoxin 2, rubredoxi 27.0 26 0.0009 24.2 1.5 18 116-133 3-20 (55)
100 1dx8_A Rubredoxin; electron tr 26.9 37 0.0013 24.6 2.4 19 115-133 6-24 (70)
101 2co8_A NEDD9 interacting prote 24.2 36 0.0012 24.2 1.9 44 70-128 11-54 (82)
102 2kn9_A Rubredoxin; metalloprot 23.5 31 0.0011 25.9 1.5 18 115-132 26-43 (81)
103 1wii_A Hypothetical UPF0222 pr 23.4 14 0.00048 28.0 -0.5 32 114-152 45-76 (85)
104 1yk4_A Rubredoxin, RD; electro 23.2 23 0.00079 24.2 0.6 14 117-130 3-16 (52)
105 1s24_A Rubredoxin 2; electron 22.9 37 0.0013 25.8 1.8 37 115-151 34-70 (87)
106 2lvu_A Zinc finger and BTB dom 28.4 18 0.00061 18.8 0.0 15 117-131 3-17 (26)
107 2vnf_A ING 4, P29ING4, inhibit 22.7 3.7 0.00013 28.7 -3.6 48 71-124 7-58 (60)
108 2m0f_A Zinc finger and BTB dom 21.2 30 0.001 17.9 0.7 12 116-127 2-13 (29)
109 1ard_A Yeast transcription fac 21.0 39 0.0013 17.5 1.2 11 117-127 3-13 (29)
110 1znf_A 31ST zinc finger from X 21.0 32 0.0011 17.6 0.8 12 117-128 2-13 (27)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.75 E-value=3.2e-19 Score=128.99 Aligned_cols=56 Identities=29% Similarity=0.760 Sum_probs=50.8
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
++...||||+++++ ++++.||+|+|+++|||+.||++|+.++++.+||+|+++|++
T Consensus 4 ~~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45689999998854 468999999999999999999999999999999999999974
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=131.07 Aligned_cols=66 Identities=30% Similarity=0.716 Sum_probs=59.7
Q ss_pred ccCcceeeeeeecCC-CCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccccccCCCCC
Q 037907 71 LMGMVECRICQEEDE-VHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPNYSLPPAR 136 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~-~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~~~p~r 136 (265)
..+...|+||+++.+ +++++.||+|+|+++++|+.||++|+..+++.+|++|+++|.++.+++|++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~~ 78 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGPS 78 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCCC
Confidence 455689999998754 567899999999999999999999999999999999999999999999875
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=7.9e-06 Score=58.82 Aligned_cols=51 Identities=27% Similarity=0.615 Sum_probs=39.1
Q ss_pred ccCcceeeeeeecCCCCc--cccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHN--MEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~--Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
..+...|.||+++..... ...||. +..|..|+.+|+..+. +|++|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCccccc
Confidence 345679999999865322 234765 7799999999998764 89999999864
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.91 E-value=4.3e-06 Score=60.78 Aligned_cols=54 Identities=22% Similarity=0.664 Sum_probs=40.9
Q ss_pred ccCcceeeeeeecCCCC--ccccccccCCcCccchHHHHHHHHHhcCCccccccccccccccc
Q 037907 71 LMGMVECRICQEEDEVH--NMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPNYS 131 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~--~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~ 131 (265)
..+...|-||++..... ....||. +..|..|+.+|+..+ .+|++|+.++...-.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCccc
Confidence 45568999999876432 3456775 789999999999754 689999999875433
No 5
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.88 E-value=9.4e-06 Score=63.05 Aligned_cols=53 Identities=23% Similarity=0.539 Sum_probs=39.9
Q ss_pred cceeeeeeecCCCCc--------------c---ccccccCCcCccchHHHHHHHHHh---cCCccccccccccccccc
Q 037907 74 MVECRICQEEDEVHN--------------M---EAPCACNGTLKFAHRKCIQRWCNK---KGDITCEICNQIFSPNYS 131 (265)
Q Consensus 74 ~~~CRIC~ee~~~~~--------------L---i~PC~CkGslk~vH~~CL~rW~~~---k~~~~CEiCk~~y~~~y~ 131 (265)
...|-||++...+.. . ..||. +..|..||.+|+.. +...+|++|+..|.....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 358999998753211 1 56776 78999999999976 456799999999975433
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.81 E-value=1.3e-05 Score=56.84 Aligned_cols=51 Identities=24% Similarity=0.529 Sum_probs=39.5
Q ss_pred ccCcceeeeeeecCC--CCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 71 LMGMVECRICQEEDE--VHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~--~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
..+...|.||++... ......||. +..|..|+.+|+..++ +|++|+.++..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccC
Confidence 345578999998754 334567875 6799999999998754 69999998853
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=1.6e-05 Score=59.16 Aligned_cols=27 Identities=22% Similarity=0.669 Sum_probs=23.8
Q ss_pred ccchHHHHHHHHHhcCCcccccccccccc
Q 037907 100 KFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 100 k~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
+..|..|+.+|+..++ +|++|++++..
T Consensus 50 H~FH~~Ci~~Wl~~~~--~CP~CR~~~~~ 76 (81)
T 2ecl_A 50 HSFHNCCMSLWVKQNN--RCPLCQQDWVV 76 (81)
T ss_dssp CEEEHHHHHHHTTTCC--BCTTTCCBCCE
T ss_pred CccChHHHHHHHHhCC--CCCCcCCCcch
Confidence 8899999999998764 99999999753
No 8
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.67 E-value=1.8e-05 Score=59.87 Aligned_cols=50 Identities=32% Similarity=0.737 Sum_probs=39.0
Q ss_pred cCcceeeeeeecCCC--CccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 72 MGMVECRICQEEDEV--HNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~--~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
.+...|-||+++... .....||. +..|..|+.+|+..+ .+|++|++++.+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCCC
Confidence 456799999987543 24457876 789999999999754 499999998754
No 9
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=1.6e-05 Score=57.08 Aligned_cols=56 Identities=20% Similarity=0.426 Sum_probs=43.1
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccccccCCC
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPNYSLPP 134 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~~~p 134 (265)
..+...|.||++... .+...||. +..|..|+.+|+..+ ..|++|+.++....-..|
T Consensus 12 ~~~~~~C~IC~~~~~-~~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 12 SLTVPECAICLQTCV-HPVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPEDFLDSG 67 (71)
T ss_dssp SSSCCBCSSSSSBCS-SEEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHHHHSCS
T ss_pred CCCCCCCccCCcccC-CCEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHhhccCC
Confidence 445678999998764 35667876 779999999999764 699999999875544444
No 10
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=3.4e-05 Score=56.76 Aligned_cols=53 Identities=23% Similarity=0.525 Sum_probs=42.3
Q ss_pred ccCcceeeeeeecCCC---CccccccccCCcCccchHHHHHHHHHhc-CCcccccccccccc
Q 037907 71 LMGMVECRICQEEDEV---HNMEAPCACNGTLKFAHRKCIQRWCNKK-GDITCEICNQIFSP 128 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~---~~Li~PC~CkGslk~vH~~CL~rW~~~k-~~~~CEiCk~~y~~ 128 (265)
..+...|-||++...+ .+...||. +..|..|+.+|+..+ +..+|++|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4556789999987543 25677875 789999999999886 56899999999764
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=1.6e-05 Score=55.79 Aligned_cols=50 Identities=20% Similarity=0.476 Sum_probs=39.0
Q ss_pred ccCcceeeeeeecCCC------CccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEEDEV------HNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~------~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
..+...|-||++...+ .....||. +..|..|+.+|+.. ...|++|++++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 4556899999987431 12567886 78999999999987 458999999875
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.67 E-value=1.3e-05 Score=54.16 Aligned_cols=48 Identities=29% Similarity=0.637 Sum_probs=38.6
Q ss_pred CcceeeeeeecCC---CCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 73 GMVECRICQEEDE---VHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 73 ~~~~CRIC~ee~~---~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
+...|.||++... ......||. +..|..|+.+|+..+ .+|++|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 3478999998753 235678875 789999999999987 78999998864
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=5.3e-05 Score=54.44 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=41.9
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccccccCC
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPNYSLP 133 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~~~ 133 (265)
..+...|.||++...+.....||. +..|..|+.+|+.. ...|++|+.++...-..+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCSSCSCC
T ss_pred cCCCCCCCCCChHHHCcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCcccccc
Confidence 345679999998765432335886 77899999999976 469999999987543333
No 14
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.65 E-value=1.6e-05 Score=57.53 Aligned_cols=50 Identities=28% Similarity=0.598 Sum_probs=39.1
Q ss_pred cCcceeeeeeecCCCC--ccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 72 MGMVECRICQEEDEVH--NMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~--~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
.+...|-||+++.... ....||. +..|..|+.+|+..+ .+|++|++++.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 3457999999886533 3467875 789999999999875 489999988753
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.64 E-value=4.6e-05 Score=55.23 Aligned_cols=51 Identities=22% Similarity=0.428 Sum_probs=41.8
Q ss_pred ccCcceeeeeeecCCCCccccc-cccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAP-CACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~P-C~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
..+...|.||++... .+...| |. +..|+.|+.+|+..++...|++|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCT-TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHh-CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 345679999988765 366678 76 7899999999999988889999999753
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.61 E-value=6.8e-05 Score=54.37 Aligned_cols=52 Identities=25% Similarity=0.465 Sum_probs=42.0
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhc----CCcccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKK----GDITCEICNQIFSP 128 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k----~~~~CEiCk~~y~~ 128 (265)
..+...|.||++...+ +...||. +..|..|+.+|+..+ +...|++|+.++..
T Consensus 16 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE-PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSS-CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCc-ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4556799999988643 5667876 779999999999884 48899999999864
No 17
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.54 E-value=9.1e-05 Score=55.36 Aligned_cols=52 Identities=17% Similarity=0.420 Sum_probs=39.9
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
......|-||++....+..-. .|. +-.|..|+.+|++.++..+|++|++++.
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~--~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE--TCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS--SSC---CEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred cCCCCcCcchhhHcccCCccC--CCC---chhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 445589999998865432211 442 6789999999999887889999999986
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.52 E-value=1.9e-05 Score=56.02 Aligned_cols=50 Identities=20% Similarity=0.475 Sum_probs=39.2
Q ss_pred ccCcceeeeeeecCCC------CccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEEDEV------HNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~------~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
..+...|-||++...+ .....||. +..|..|+.+|+..+ .+|++|+.++.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccC
Confidence 4556899999987421 12567886 789999999999876 49999999986
No 19
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.50 E-value=2.1e-05 Score=53.28 Aligned_cols=49 Identities=29% Similarity=0.599 Sum_probs=37.1
Q ss_pred cCcceeeeeeecCCC--Cccccc-cccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 72 MGMVECRICQEEDEV--HNMEAP-CACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~--~~Li~P-C~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
.+...|-||+++... .....| |. +..|..|+++|++. ..+|++|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 345789999988543 344555 64 78999999999976 458999998864
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.49 E-value=5.4e-05 Score=53.39 Aligned_cols=48 Identities=29% Similarity=0.636 Sum_probs=39.3
Q ss_pred CcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 73 GMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
+...|-||++...+.....||. +..|..|+.+|+..+ ..|++|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhH
Confidence 3468999999876545778876 679999999999765 58999999985
No 21
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=0.00014 Score=52.69 Aligned_cols=52 Identities=25% Similarity=0.566 Sum_probs=41.9
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHh----cCCcccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNK----KGDITCEICNQIFSP 128 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~----k~~~~CEiCk~~y~~ 128 (265)
..+...|.||++...+ +...||. +..|..|+.+|+.. .+...|++|+.++..
T Consensus 16 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ-PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSS-CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCC-ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4556899999988653 5566876 67899999999987 457899999999864
No 22
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=5.4e-05 Score=53.76 Aligned_cols=48 Identities=29% Similarity=0.687 Sum_probs=39.9
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
.+...|.||++...+ ...||. +..|..|+.+|+. ....|++|++++..
T Consensus 13 ~~~~~C~IC~~~~~~--~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD--LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS--EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC--cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 445799999998765 778886 6799999999998 56799999998863
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=0.00023 Score=52.04 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=39.4
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
..+...|.||++...+ +...||. +..|..|+.+|+.. ...|++|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN-PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS-EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC-eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 3445789999987643 6678886 67899999999975 558999999985
No 24
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.28 E-value=0.00012 Score=57.72 Aligned_cols=48 Identities=23% Similarity=0.458 Sum_probs=35.6
Q ss_pred CcceeeeeeecCCCC-----------------ccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 73 GMVECRICQEEDEVH-----------------NMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~-----------------~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
+...|-||++..++. ....||. +..|..|+.+|+.. ..+|++|+++|.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 346788887664321 2345666 88999999999986 468999999974
No 25
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.28 E-value=5.6e-05 Score=52.22 Aligned_cols=48 Identities=21% Similarity=0.501 Sum_probs=37.5
Q ss_pred cceeeeeeecCCC------CccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 74 MVECRICQEEDEV------HNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 74 ~~~CRIC~ee~~~------~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
...|-||++...+ .....||. +..|..|+.+|+.. ..+|++|+.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 4689999987432 12567876 78999999999987 4599999999763
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.0001 Score=52.45 Aligned_cols=51 Identities=24% Similarity=0.449 Sum_probs=40.7
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHh-cCCccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNK-KGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~-k~~~~CEiCk~~y~ 127 (265)
..+...|.||++... .+...||. +..|..|+.+|+.. ++...|++|++++.
T Consensus 17 ~~~~~~C~IC~~~~~-~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDILQ-KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSBCS-SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CccCCEeccCCcccC-CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 345679999998765 35566775 77999999999985 45779999999975
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.25 E-value=0.00018 Score=53.64 Aligned_cols=51 Identities=22% Similarity=0.428 Sum_probs=42.3
Q ss_pred ccCcceeeeeeecCCCCccccc-cccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAP-CACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~P-C~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
..+.-.|-||++... .+...| |. +..++.|+.+|+..++...|++|+.++.
T Consensus 10 ~~~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECS-SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhc-CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 455689999998765 467778 65 6789999999999888899999999873
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.00027 Score=49.71 Aligned_cols=50 Identities=12% Similarity=0.301 Sum_probs=39.4
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
.+...|.||++...+ +...||. +..|..|+.+|+. ++...|++|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS-PKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESS-CCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcC-eeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 456789999987643 4557776 6789999999997 456789999998753
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.13 E-value=8.4e-05 Score=53.64 Aligned_cols=52 Identities=25% Similarity=0.482 Sum_probs=41.7
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhc-----CCcccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKK-----GDITCEICNQIFSP 128 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k-----~~~~CEiCk~~y~~ 128 (265)
..+...|.||++...+ +...||. +..|..|+.+|+..+ +...|++|+.++..
T Consensus 9 ~~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTE-PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSS-CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCC-eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4566899999988653 5667876 778999999999873 47899999999864
No 30
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.09 E-value=0.00032 Score=52.32 Aligned_cols=55 Identities=27% Similarity=0.463 Sum_probs=43.3
Q ss_pred cccCcceeeeeeecCC-CCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 70 ALMGMVECRICQEEDE-VHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 70 ~~~~~~~CRIC~ee~~-~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
...+...|-||++.-+ ......||.|. +..++.|+.+|... +...|++|+.+|..
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred ccccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 3566789999999764 33567888884 66999999998754 56899999999964
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.09 E-value=0.00038 Score=47.23 Aligned_cols=46 Identities=26% Similarity=0.651 Sum_probs=36.2
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHh-cCCcccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNK-KGDITCEIC 122 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~-k~~~~CEiC 122 (265)
..+...|.||++...+ +...||. +..|..|+.+|+.. ++..+|++|
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE-PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS-CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc-cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456799999988654 5567876 67999999999875 567789987
No 32
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.84 E-value=0.00054 Score=49.47 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=40.5
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
..+.-.|-||++.-. .+...||. +..++.|+.+|+.. +..+|++|+.++..
T Consensus 5 ~~~~~~C~IC~~~~~-~Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMK-DPVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCS-SEEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred CcccCCCCCcccccc-CCEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence 345679999998764 36777876 77899999999974 57799999998753
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.82 E-value=0.00051 Score=52.61 Aligned_cols=50 Identities=24% Similarity=0.591 Sum_probs=41.1
Q ss_pred ccCcceeeeeeecCCCCccc-cccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNME-APCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li-~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
..+...|-||++...+ +.. .||. +..|..|+.+|+..++ ..|++|+.++.
T Consensus 19 l~~~~~C~IC~~~~~~-p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~ 69 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRD-ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQ 69 (100)
T ss_dssp HHHHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCC
T ss_pred CCCCCCCccCCccccC-ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCC
Confidence 4456789999998754 555 8887 7899999999999875 69999999985
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.80 E-value=0.00078 Score=46.77 Aligned_cols=46 Identities=26% Similarity=0.510 Sum_probs=36.3
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhc-CCcccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKK-GDITCEIC 122 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k-~~~~CEiC 122 (265)
..+...|.||++...+ +...||. +..|+.|+++|++.+ +..+|++|
T Consensus 17 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS-CEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC-eEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456799999987653 5666876 779999999999864 56789988
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.80 E-value=0.00041 Score=48.66 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=37.0
Q ss_pred cceeeeeee-cCCCC---ccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 74 MVECRICQE-EDEVH---NMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 74 ~~~CRIC~e-e~~~~---~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
+..|-||++ ...+. .+..||. +..|..|+.+|+.. +...|++|+.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 468999998 32221 1457887 67999999999875 46789999999853
No 36
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.79 E-value=0.00023 Score=57.38 Aligned_cols=48 Identities=23% Similarity=0.490 Sum_probs=0.8
Q ss_pred CcceeeeeeecCCC-----------------CccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 73 GMVECRICQEEDEV-----------------HNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 73 ~~~~CRIC~ee~~~-----------------~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
+...|-||+++.++ ..+..||. +..|..|+.+|+..+ .+|++|+++|.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeee
Confidence 34689999876432 11223565 789999999999884 58999999975
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.66 E-value=0.001 Score=52.38 Aligned_cols=50 Identities=18% Similarity=0.392 Sum_probs=39.9
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
.+...|-||++... .+...||. +..|+.|+.+|+. .+...|++|+..+..
T Consensus 50 ~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVF-RPITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCS-SEEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHc-CcEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 34568999998765 36667876 6789999999998 455699999999864
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.62 E-value=0.00062 Score=56.25 Aligned_cols=50 Identities=20% Similarity=0.429 Sum_probs=39.3
Q ss_pred cCcceeeeeeecCCCCcccc-ccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEA-PCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~-PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
.+...|-||++...+ +... ||. +..|..|+.+|+.. +...|++|+..+..
T Consensus 52 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKN-TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhC-cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCCC
Confidence 345699999988654 4444 776 78999999999985 46789999999853
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.51 E-value=0.00093 Score=50.55 Aligned_cols=49 Identities=22% Similarity=0.496 Sum_probs=38.4
Q ss_pred cCcceeeeeeecCCCCcccc-ccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEA-PCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~-PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
.+...|.||++...+ +... ||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 20 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNI-AMIIPQCS-----HNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCC-cCEECCCC-----CHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 345789999988654 4444 776 789999999999854 699999999853
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.38 E-value=0.002 Score=49.20 Aligned_cols=50 Identities=24% Similarity=0.599 Sum_probs=39.8
Q ss_pred CcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhc-CCcccccccccccc
Q 037907 73 GMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKK-GDITCEICNQIFSP 128 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k-~~~~CEiCk~~y~~ 128 (265)
+...|-||++... .+...||. +..|..|+.+|+..+ +...|++|+.++..
T Consensus 20 ~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIK-EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCS-SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhc-CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3468999998764 35667876 788999999999875 56799999998764
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.27 E-value=0.0021 Score=53.03 Aligned_cols=51 Identities=22% Similarity=0.420 Sum_probs=40.5
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPN 129 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~ 129 (265)
.+...|.||++... .+...||. +..++.|+.+|+.. +...|++|+.++...
T Consensus 76 ~~~~~C~IC~~~~~-~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVY-QPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCS-SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhc-CCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 34578999998764 36667886 67899999999985 556899999998644
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.26 E-value=0.0013 Score=50.57 Aligned_cols=50 Identities=20% Similarity=0.374 Sum_probs=39.8
Q ss_pred ccCcceeeeeeecCCCCcccc-ccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEA-PCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~-PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
..+...|-||++...+ +... ||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFID-ATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhC-cCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 4456799999987654 5554 887 778999999999865 799999999864
No 43
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.20 E-value=0.0014 Score=52.83 Aligned_cols=46 Identities=30% Similarity=0.663 Sum_probs=37.2
Q ss_pred cceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 74 MVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 74 ~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
...|-||++... .+...||. +..|..|+.+|+..+ ..|++|+.++.
T Consensus 53 ~~~C~iC~~~~~-~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFI-EAVTLNCA-----HSFCSYCINEWMKRK--IECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCS-SEEEETTS-----CEEEHHHHHHHTTTC--SBCTTTCCBCC
T ss_pred cCCCcccCcccC-CceECCCC-----CCccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 357999998764 36677876 789999999999754 58999999874
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.09 E-value=0.0022 Score=49.85 Aligned_cols=52 Identities=23% Similarity=0.501 Sum_probs=40.7
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPN 129 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~ 129 (265)
..+...|-||++... .+...||. +..|..|+.+|+..+ ...|++|+.++...
T Consensus 20 ~~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 20 FVKSISCQICEHILA-DPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHHHTBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGG
T ss_pred ccCCCCCCCCCcHhc-CcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCHh
Confidence 334578999998764 35667876 778999999999874 45899999998643
No 45
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.99 E-value=0.0013 Score=51.13 Aligned_cols=49 Identities=20% Similarity=0.524 Sum_probs=38.6
Q ss_pred CcceeeeeeecCCC------CccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 73 GMVECRICQEEDEV------HNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 73 ~~~~CRIC~ee~~~------~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
+...|-||++...+ .....||. +..|..|+.+|+..+. +|++|++.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTCS--BCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhCC--CCCCCCCcCcc
Confidence 45789999987432 12677887 7899999999997654 99999999864
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=95.84 E-value=0.0044 Score=48.51 Aligned_cols=51 Identities=25% Similarity=0.532 Sum_probs=40.3
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
..+...|-||++... .+...||. +..+..|+.+|+..++. +|++|+.++..
T Consensus 15 ~~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALR-EAVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhc-CeEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCH
Confidence 345579999998764 35667775 77999999999987654 89999998864
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=95.61 E-value=0.0034 Score=44.51 Aligned_cols=50 Identities=20% Similarity=0.471 Sum_probs=36.3
Q ss_pred ccCcceeeeeeecCCCCcc-ccccccCCcCcc-chHHHHHHHHHhcCCccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNM-EAPCACNGTLKF-AHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~L-i~PC~CkGslk~-vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
..+...|-||++...+..+ ..||. +. .=..|+.+|.+. ...|++|++++.
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 3456799999988654332 23987 44 348999999974 458999999875
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.53 E-value=0.0076 Score=57.61 Aligned_cols=50 Identities=22% Similarity=0.597 Sum_probs=40.1
Q ss_pred ceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccccccc
Q 037907 75 VECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPNYS 131 (265)
Q Consensus 75 ~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~ 131 (265)
..|.||++... .+...||. +..|..|+.+|+.. +...|++|+.++.....
T Consensus 333 ~~C~ICle~~~-~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 333 QLCKICAENDK-DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SBCTTTSSSBC-CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEEEE
T ss_pred CCCCccCcCCC-CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCcee
Confidence 68999998764 46778987 56799999999985 55699999999875433
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.49 E-value=0.0031 Score=48.89 Aligned_cols=50 Identities=20% Similarity=0.486 Sum_probs=37.8
Q ss_pred cCcceeeeeeecCCC----C--ccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 72 MGMVECRICQEEDEV----H--NMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~----~--~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
.+...|-||++...+ . ....||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCCh
Confidence 445789999986431 1 2455665 789999999999875 499999999864
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.42 E-value=0.0016 Score=50.48 Aligned_cols=50 Identities=24% Similarity=0.561 Sum_probs=39.6
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
.+...|-||++... .+...||. +..+..|+.+|+.. +...|++|+..+..
T Consensus 13 ~~~~~C~iC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV-EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS-SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC-ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 34578999998764 36667876 78999999999964 45799999999863
No 51
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.70 E-value=0.008 Score=57.18 Aligned_cols=56 Identities=21% Similarity=0.530 Sum_probs=40.5
Q ss_pred cCcceeeeeeecCCC-Ccc-ccccc---cCCcCccchHHHHHHHHHhcCC---------cccccccccccccc
Q 037907 72 MGMVECRICQEEDEV-HNM-EAPCA---CNGTLKFAHRKCIQRWCNKKGD---------ITCEICNQIFSPNY 130 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~-~~L-i~PC~---CkGslk~vH~~CL~rW~~~k~~---------~~CEiCk~~y~~~y 130 (265)
.+..+|-||++...+ +.+ ...|. |+ +..|..||.+|+...++ ..|+.|+++....+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 456799999987543 333 34463 54 78999999999987532 68999999875433
No 52
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.09 E-value=0.032 Score=49.64 Aligned_cols=50 Identities=20% Similarity=0.569 Sum_probs=39.3
Q ss_pred CcceeeeeeecCCCCccccccc-cCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 73 GMVECRICQEEDEVHNMEAPCA-CNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~~Li~PC~-CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
....|-||.+--..+. -|. |. ...|..|+.+|++.++...|+.|+..+..
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCc---ccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4689999998755332 232 43 67999999999999888999999999753
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.04 E-value=0.0072 Score=43.77 Aligned_cols=46 Identities=17% Similarity=0.541 Sum_probs=36.6
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCcc-chHHHHHHHHHhcCCccccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKF-AHRKCIQRWCNKKGDITCEICNQIFSPN 129 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~-vH~~CL~rW~~~k~~~~CEiCk~~y~~~ 129 (265)
.+...|.||++... .+...||. +. ....|+.+| ..|++|+..+...
T Consensus 22 ~~~~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 22 QEEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITFK 68 (74)
T ss_dssp HHHTBCTTTSSSBC-CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred ccCCCCCCCCCCCC-CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccCc
Confidence 34578999998764 35667987 66 899999999 7999999998643
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.54 E-value=0.0099 Score=46.37 Aligned_cols=46 Identities=13% Similarity=0.343 Sum_probs=37.2
Q ss_pred cCcceeeeeeecCCCCcccc-ccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEA-PCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~-PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
.+...|.||++...+ +... ||. +..++.|+.+|+. ..|++|+.++.
T Consensus 20 ~~~~~C~IC~~~~~~-pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE-PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSS-CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhC-ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 445789999987653 5555 886 7789999999987 68999999974
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=93.40 E-value=0.025 Score=39.81 Aligned_cols=48 Identities=17% Similarity=0.465 Sum_probs=35.9
Q ss_pred CcceeeeeeecCCCCc-cccccccCCcCcc-chHHHHHHHHHhcCCccccccccccc
Q 037907 73 GMVECRICQEEDEVHN-MEAPCACNGTLKF-AHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~~-Li~PC~CkGslk~-vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
....|.||++...+.. +..||. +. +-..|+.+|.+.+ ..|++|++++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhh
Confidence 4578999998764322 235987 44 5789999998653 69999999875
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.26 E-value=0.04 Score=47.71 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=38.9
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
.+.-.|-||++--. .|.+.||. +-.-+.|+.+|+..++.. |++|+.++.
T Consensus 206 ~~~~~c~i~~~~~~-dPv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELMR-EPCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBCS-SEEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCC
T ss_pred CcccCCcCcCCHhc-CCeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCc
Confidence 34578999998764 48889975 567789999999886544 999999885
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=92.38 E-value=0.069 Score=43.90 Aligned_cols=51 Identities=25% Similarity=0.532 Sum_probs=39.6
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
..+.-.|-||++... .+...||. +...+.|+.+|+..++. +|++|+.++..
T Consensus 15 ~~~~~~C~IC~~~~~-~pv~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALR-EAVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhc-CcEECCCC-----CHHHHHHHHHHHHhCCC-CCCCCccCcch
Confidence 345578999998764 35666765 67899999999987654 99999988764
No 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=92.07 E-value=0.037 Score=45.12 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=38.3
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIF 126 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y 126 (265)
..+.-.|-||++...+ +...||. +..++.|+.+|+.. +...|++|+.+.
T Consensus 28 l~~~~~C~IC~~~~~~-pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRR-PFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcC-cEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 3456799999987643 5667776 67899999999964 456999999874
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=91.80 E-value=0.14 Score=37.91 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=38.5
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
.+.-.|-||++--. .+...||. +-.-+.|+.+|+.. ..+|++|++++..
T Consensus 12 p~~~~CpI~~~~m~-dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT-DPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred chheECcccCchhc-CCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 34578999988754 37888874 56789999999985 4699999998753
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.43 E-value=0.084 Score=39.42 Aligned_cols=49 Identities=27% Similarity=0.588 Sum_probs=37.5
Q ss_pred CcceeeeeeecCCCCccc--cccccCCcCccchHHHHHHHHHhc---C---Cccccc--ccccc
Q 037907 73 GMVECRICQEEDEVHNME--APCACNGTLKFAHRKCIQRWCNKK---G---DITCEI--CNQIF 126 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~~Li--~PC~CkGslk~vH~~CL~rW~~~k---~---~~~CEi--Ck~~y 126 (265)
+...|-||+++.....+. .||. +..-+.|+.+++..+ + ...|+. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 356899999986544444 3787 678999999999764 2 479999 99884
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.38 E-value=0.099 Score=37.57 Aligned_cols=45 Identities=18% Similarity=0.561 Sum_probs=34.2
Q ss_pred CcceeeeeeecCCCCccccccccCCcCcc-chHHHHHHHHHhcCCccccccccccccc
Q 037907 73 GMVECRICQEEDEVHNMEAPCACNGTLKF-AHRKCIQRWCNKKGDITCEICNQIFSPN 129 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~~Li~PC~CkGslk~-vH~~CL~rW~~~k~~~~CEiCk~~y~~~ 129 (265)
+...|.||++... .+...||. +. ....|+++. ..|++|+.++...
T Consensus 24 ~~~~C~IC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCC-CBCCSSSC-----CCCBCHHHHHHC------SBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCC-CEEEecCC-----CHHHHHHHhhCC------CCCccCCceecCc
Confidence 3468999998754 36668986 55 789999643 7999999998643
No 62
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.62 E-value=0.036 Score=37.89 Aligned_cols=45 Identities=22% Similarity=0.609 Sum_probs=34.6
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
.+...|.||++... .+...||. +..+..|+.+| ...|++|++++.
T Consensus 4 ~~~~~C~IC~~~~~-~p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAK-CPKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCB-CCSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccC-CeEEcCCC-----CcccHHHHccC-----CCCCCcCCcEee
Confidence 45578999998765 36778876 56788898773 678999999875
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.43 E-value=0.2 Score=35.84 Aligned_cols=50 Identities=20% Similarity=0.530 Sum_probs=36.5
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCcc-chHHHHHHHHHhcCCcccccccccccccccCC
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKF-AHRKCIQRWCNKKGDITCEICNQIFSPNYSLP 133 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~-vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~~~ 133 (265)
.+...|.||++... .....||. +. +-..|+++ ...|++|+.++....++.
T Consensus 13 ~~~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV-NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQESFALS 63 (68)
T ss_dssp CCSSCCSSSSSSCC-CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCEECCC
T ss_pred CCCCCCCCcCcCCC-CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhceEEee
Confidence 34578999998764 46778997 34 66788873 479999999987554443
No 64
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=90.25 E-value=0.12 Score=39.78 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=38.1
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
.+.-.|-||++--. .|...||. +-.-+.|+.+|+.. ..+|++|+.++.
T Consensus 27 p~~~~CpI~~~~m~-dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTLMT-DPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCSBCS-SEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCC
T ss_pred cHhhCCcCccCccc-CCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCC
Confidence 34578999987754 47888875 56789999999974 579999999875
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=89.81 E-value=0.18 Score=43.17 Aligned_cols=50 Identities=14% Similarity=0.072 Sum_probs=39.5
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
.+.-.|-||++--. .|.+.||. +-.=+.|+.+|+...+. +|++|+.++..
T Consensus 104 p~~f~CPI~~elm~-DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR-EPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred cHhhcccCccccCC-CCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 34578999988754 37888875 56789999999988665 79999998853
No 66
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.75 E-value=0.23 Score=37.39 Aligned_cols=48 Identities=19% Similarity=0.388 Sum_probs=37.6
Q ss_pred cCcceeeeeeecCCCCccccc-cccCCcCccchHHHHHHHHHhc----CCccccc--cccc
Q 037907 72 MGMVECRICQEEDEVHNMEAP-CACNGTLKFAHRKCIQRWCNKK----GDITCEI--CNQI 125 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~P-C~CkGslk~vH~~CL~rW~~~k----~~~~CEi--Ck~~ 125 (265)
.+.-.|-||++.-. .+...| |. +-.-+.|+.+|+... +..+|++ |...
T Consensus 5 ~~~~~CPI~~~~~~-dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK-KPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS-SEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc-CCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 44578999997754 477776 76 567899999999875 4679999 8876
No 67
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=85.36 E-value=0.49 Score=36.11 Aligned_cols=49 Identities=14% Similarity=-0.026 Sum_probs=37.6
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
.+.-.|-||++--. .+.+.||. -+-.-+.|+++|+.. ..+|++|++++.
T Consensus 20 p~~~~CpI~~~~m~-dPV~~~cG----~htf~r~cI~~~l~~--~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC-DPVVLPSS----RVTVDRSTIARHLLS--DQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCS-SEEECTTT----CCEEEHHHHHHHTTT--SCBCTTTCSBCC
T ss_pred cHhcCCcCcccccc-CCeECCCC----CeEECHHHHHHHHHh--CCCCCCCCCCCC
Confidence 34578999988754 37778865 135679999999986 468999999885
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=82.00 E-value=0.17 Score=47.29 Aligned_cols=48 Identities=19% Similarity=0.560 Sum_probs=37.5
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCcc-chHHHHHHHHHhcCCccccccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKF-AHRKCIQRWCNKKGDITCEICNQIFSPNYS 131 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~-vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~ 131 (265)
.+...|.||++... .+...||. +. ....|+.+| ..|++|+.++....+
T Consensus 293 ~~~~~C~IC~~~~~-~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~~~~ 341 (345)
T 3t6p_A 293 QEERTCKVCMDKEV-SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKGTVR 341 (345)
T ss_dssp HTTCBCTTTSSSBC-CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCEEEE
T ss_pred cCCCCCCccCCcCC-ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccCeEE
Confidence 45578999998764 35667987 56 889999988 699999999864433
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=81.97 E-value=0.28 Score=35.92 Aligned_cols=48 Identities=19% Similarity=0.513 Sum_probs=35.5
Q ss_pred CcceeeeeeecCCCCccccccccCCcCcc-chHHHHHHHHHhcCCcccccccccccccccC
Q 037907 73 GMVECRICQEEDEVHNMEAPCACNGTLKF-AHRKCIQRWCNKKGDITCEICNQIFSPNYSL 132 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~~Li~PC~CkGslk~-vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~~ 132 (265)
+...|.||++... .....||. +. .=..|+.+| ..|++|+.++....++
T Consensus 17 ~~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~~~i 65 (79)
T 2yho_A 17 EAMLCMVCCEEEI-NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHVQHV 65 (79)
T ss_dssp HHTBCTTTSSSBC-CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEEEEC
T ss_pred CCCEeEEeCcccC-cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCeEEE
Confidence 3468999998754 35678987 34 457899887 3999999998755443
No 70
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=73.67 E-value=0.46 Score=36.01 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=33.5
Q ss_pred cCcceeeeeeecC--CCCccccccccCCcCccchHHHHHHHHHhcCCccccccccc
Q 037907 72 MGMVECRICQEED--EVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQI 125 (265)
Q Consensus 72 ~~~~~CRIC~ee~--~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~ 125 (265)
.+...|.||...+ +++.|+ - |.+--..+|..|+.-=....+.+.|..|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll-~--CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVIL-F--CDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEE-E--CSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEE-E--CCCCCchhhcccCCCCccCCCceECccccCc
Confidence 4558999999765 333443 2 3344568999998532334578888888754
No 71
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=71.27 E-value=1.3 Score=40.30 Aligned_cols=50 Identities=22% Similarity=0.350 Sum_probs=38.8
Q ss_pred cCcceeeeeeecCCCCcccc-ccccCCcCccchHHHHHHHHHhcCCccccc--cccccc
Q 037907 72 MGMVECRICQEEDEVHNMEA-PCACNGTLKFAHRKCIQRWCNKKGDITCEI--CNQIFS 127 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~-PC~CkGslk~vH~~CL~rW~~~k~~~~CEi--Ck~~y~ 127 (265)
...-.|-||++-.. .|... .|. +-.=+.|+.+|+..++...|++ |++.+.
T Consensus 179 ~~el~CPIcl~~f~-DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYE-APLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCS-SEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCccc-CCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 45578999988754 35543 565 5678899999998878899999 999875
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=69.24 E-value=2.2 Score=29.76 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=32.8
Q ss_pred ceeeeeeecCCCCcccc-ccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 75 VECRICQEEDEVHNMEA-PCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 75 ~~CRIC~ee~~~~~Li~-PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
-.|-||++--. .+.+. +|. .-.=+.|+++|+...+ +|++++++...
T Consensus 4 ~~CpIs~~~m~-dPV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR-RPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS-SEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EEecCCCCCCC-CCEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 35777776544 35555 443 4678999999998765 59999998753
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=66.61 E-value=1.3 Score=31.92 Aligned_cols=47 Identities=15% Similarity=0.372 Sum_probs=34.2
Q ss_pred CcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHh--cCCccccccccc
Q 037907 73 GMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNK--KGDITCEICNQI 125 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~--k~~~~CEiCk~~ 125 (265)
....|.||.+.++ |+. |.+=-+..|..|+.-.+.. ++.+.|..|...
T Consensus 11 ~~~~C~vC~~~~~---ll~---Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTD---VLR---CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTT---CEE---CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCCe---EEE---CCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3467999986543 431 4455689999999877765 478999999765
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=62.42 E-value=2.9 Score=32.78 Aligned_cols=55 Identities=16% Similarity=0.425 Sum_probs=40.4
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccccccCCC
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSPNYSLPP 134 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~~y~~~p 134 (265)
.-+.--|+.|+.++. .|+. |+ -+|.=..||..-+..++ .|+||+++.....+++.
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~-C~----dHYLCl~CLtlmL~~Sd--rCpIC~~pLPtkl~~~~ 79 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVE-CN----NHYLCLNCLTLLLSVSN--RCPICKMPLPTKLRPSA 79 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEE-CS----SCEEEHHHHHHTCSSSS--EETTTTEECCCCSCTTT
T ss_pred ccCcccChhhccccC--Ceee-ec----chhhHHHHHHHHHhhcc--CCcccCCcCCcceecCc
Confidence 445578999988875 3542 44 48999999988777655 99999999876665543
No 75
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=58.80 E-value=1.3 Score=32.24 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=33.6
Q ss_pred cCcceeeeeeecC--CCCccccccccCCcCccchHHHHHHHHHhcCCccccccccc
Q 037907 72 MGMVECRICQEED--EVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQI 125 (265)
Q Consensus 72 ~~~~~CRIC~ee~--~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~ 125 (265)
.+...|.||...+ +++.|+. |.+=-+.+|..|+.-=...+|.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~---CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILF---CDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEE---CSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEE---CCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3457899998765 3444432 3344578999998532334578888888654
No 76
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=57.77 E-value=1.7 Score=28.98 Aligned_cols=46 Identities=22% Similarity=0.584 Sum_probs=29.3
Q ss_pred eeeeeeecCCCCccccccccCCcCccchHHHHHHHHH--hcCCcccccccc
Q 037907 76 ECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCN--KKGDITCEICNQ 124 (265)
Q Consensus 76 ~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~--~k~~~~CEiCk~ 124 (265)
.|.+|...++++.|+. |.+--+..|..|+.-=+. .++.+.|..|..
T Consensus 2 ~C~vC~~~~~~~~ll~---Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLIL---CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE---CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEE---CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5888987765555542 345557899999842121 236777888754
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=55.73 E-value=1.4 Score=31.76 Aligned_cols=51 Identities=18% Similarity=0.389 Sum_probs=34.7
Q ss_pred CcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHh--cCCcccccccccc
Q 037907 73 GMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNK--KGDITCEICNQIF 126 (265)
Q Consensus 73 ~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~--k~~~~CEiCk~~y 126 (265)
+...|.+|...+++..|+. |.+--.+.|..|+.--... .+.+.|+.|....
T Consensus 17 ~~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3457999987766555653 4455589999998643332 2678899997664
No 78
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=50.19 E-value=1.4 Score=33.95 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=27.1
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHH
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCN 112 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~ 112 (265)
..+...|.+|.+.++..+|+ .|.+=-+..|..||.-...
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll---~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQF---FCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSE---ECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCe---ECCCCCCCcChHHhCCccc
Confidence 34568999999887654554 2345558899999976553
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=50.05 E-value=28 Score=26.95 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=35.7
Q ss_pred CcceeeeeeecC---CCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 73 GMVECRICQEED---EVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 73 ~~~~CRIC~ee~---~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
....|.||-++- ..+.+..-|+=- ---|=+.|.+-=+++ ++..|..||.+|+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC--~FPvCrpCyEYErke-G~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNEC--GFPACRPCYEYERRE-GTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSS--CCCCCHHHHHHHHHT-SCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeecc--CChhhHHHHHHHHhc-cCccccccCCcccc
Confidence 457999998873 234444444311 134778898765554 78899999999973
No 80
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.48 E-value=13 Score=26.87 Aligned_cols=54 Identities=22% Similarity=0.447 Sum_probs=35.4
Q ss_pred ccCcceeeeeeecCC-CCccccccccCCcCccchHHHHHHHHHh---cCCcccccccccccc
Q 037907 71 LMGMVECRICQEEDE-VHNMEAPCACNGTLKFAHRKCIQRWCNK---KGDITCEICNQIFSP 128 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~-~~~Li~PC~CkGslk~vH~~CL~rW~~~---k~~~~CEiCk~~y~~ 128 (265)
..+...| ||....+ ++.|+.==.| -.|.|..|+.-=-.. -....|+.|.....+
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C---~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLC---QDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTT---CCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCC---CCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 3455677 8987654 5566642234 489999999532222 267899999987643
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=48.57 E-value=3.6 Score=28.73 Aligned_cols=48 Identities=19% Similarity=0.458 Sum_probs=32.5
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHH--hcCCccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCN--KKGDITCEICNQI 125 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~--~k~~~~CEiCk~~ 125 (265)
.....|.+|...+ .|+. |.+--+..|..|+.-=+. .++.+.|..|.++
T Consensus 9 ~~~~~C~vC~~~g---~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGG---EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCS---SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCCC---cEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4457899998753 3332 445557999999975433 2578899999754
No 82
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.26 E-value=5.1 Score=30.65 Aligned_cols=50 Identities=20% Similarity=0.456 Sum_probs=32.8
Q ss_pred ccCcceeeeeeecCCCCcccc--ccccCCcCccchHHHHHHHHHh--cCCcccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEA--PCACNGTLKFAHRKCIQRWCNK--KGDITCEICNQIF 126 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~--PC~CkGslk~vH~~CL~rW~~~--k~~~~CEiCk~~y 126 (265)
..+...| ||...+. +.|+. -|.|. ..+.|..|+. +.. ++.+.|+.|...-
T Consensus 33 ~~e~~yC-iC~~~~~-g~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 33 PNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCBCS-TTCCBCC-SCCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCcEE-ECCCCCC-CCEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 4456788 9988654 34542 22243 2689999997 333 4789999997653
No 83
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.25 E-value=2.1 Score=32.25 Aligned_cols=57 Identities=12% Similarity=0.290 Sum_probs=38.4
Q ss_pred CcceeeeeeecCC--CCccccccccCCcCccchHHHHHHHHH------hcCCcccccccccccccccC
Q 037907 73 GMVECRICQEEDE--VHNMEAPCACNGTLKFAHRKCIQRWCN------KKGDITCEICNQIFSPNYSL 132 (265)
Q Consensus 73 ~~~~CRIC~ee~~--~~~Li~PC~CkGslk~vH~~CL~rW~~------~k~~~~CEiCk~~y~~~y~~ 132 (265)
....|.+|...+. ++.|+. |.+=-+.+|..|+.-=+. .++.+.|..|....+..-+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~ 79 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQK 79 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTC
T ss_pred CCCcCCCCCCCCCCCCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhccc
Confidence 3468999998754 244442 445557889999965443 35889999998876544333
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.87 E-value=1 Score=30.97 Aligned_cols=32 Identities=16% Similarity=0.451 Sum_probs=18.5
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHH
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQ 108 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~ 108 (265)
......|.+|...+ .|+. |.+--+..|..|+.
T Consensus 6 ~~~~~~C~vC~~~g---~ll~---Cd~C~~~~H~~Cl~ 37 (56)
T 2yql_A 6 SGHEDFCSVCRKSG---QLLM---CDTCSRVYHLDCLD 37 (56)
T ss_dssp CSSCCSCSSSCCSS---CCEE---CSSSSCEECSSSSS
T ss_pred CCCCCCCccCCCCC---eEEE---cCCCCcceECccCC
Confidence 44567899998753 2321 23334666776654
No 85
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=40.37 E-value=5.3 Score=32.75 Aligned_cols=52 Identities=15% Similarity=0.407 Sum_probs=34.6
Q ss_pred ccCcceeeeeeecCC-CCccccccccCCcCccchHHHHHHHHH---hcCCcccccccccc
Q 037907 71 LMGMVECRICQEEDE-VHNMEAPCACNGTLKFAHRKCIQRWCN---KKGDITCEICNQIF 126 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~-~~~Li~PC~CkGslk~vH~~CL~rW~~---~k~~~~CEiCk~~y 126 (265)
..+...| +|....+ ++.|+. |.+--.+.|..|+.---. ..+...|+.|...-
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~---Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIG---CDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEE---CTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeE---CCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3456889 9988653 556664 334458999999953222 24689999998764
No 86
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.36 E-value=1.7 Score=33.03 Aligned_cols=52 Identities=21% Similarity=0.405 Sum_probs=33.4
Q ss_pred ccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHH--HhcCCccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWC--NKKGDITCEICNQI 125 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~--~~k~~~~CEiCk~~ 125 (265)
..+...|.||...++++.|+ .|.+--+..|..||.-=+ ..++.+.|+.|...
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll---~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLL---FCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCE---ECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEE---EcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34557899999876544443 233444789999985211 22478889999754
No 87
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=36.67 E-value=12 Score=28.91 Aligned_cols=34 Identities=18% Similarity=0.444 Sum_probs=23.2
Q ss_pred CcceeeeeeecCC------CCccccccccCCcCccchHHHHHH
Q 037907 73 GMVECRICQEEDE------VHNMEAPCACNGTLKFAHRKCIQR 109 (265)
Q Consensus 73 ~~~~CRIC~ee~~------~~~Li~PC~CkGslk~vH~~CL~r 109 (265)
....|.+|+..++ .+.|+ .|.+--+..|..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll---~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELI---SCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCE---ECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhce---EhhhcCCCCCCchhcC
Confidence 4578999987642 33555 3445557899999953
No 88
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=35.42 E-value=22 Score=24.32 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=13.5
Q ss_pred CcccccccccccccccCC
Q 037907 116 DITCEICNQIFSPNYSLP 133 (265)
Q Consensus 116 ~~~CEiCk~~y~~~y~~~ 133 (265)
...|.+|++.|.+...-+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp 20 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDP 20 (52)
T ss_dssp CEECSSSCCCCCTTTCCT
T ss_pred cEEeCCCCeEEcCCcCCc
Confidence 468999999998655433
No 89
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=35.03 E-value=14 Score=25.74 Aligned_cols=18 Identities=33% Similarity=0.857 Sum_probs=13.5
Q ss_pred CcccccccccccccccCC
Q 037907 116 DITCEICNQIFSPNYSLP 133 (265)
Q Consensus 116 ~~~CEiCk~~y~~~y~~~ 133 (265)
...|.+|++.|.+...-|
T Consensus 3 ~y~C~vCGyvYd~~~Gdp 20 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDP 20 (54)
T ss_dssp CEEETTTCCEECTTTCBG
T ss_pred ceECCCCCeEECCCcCCc
Confidence 468999999998654433
No 90
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=34.97 E-value=13 Score=26.70 Aligned_cols=50 Identities=20% Similarity=0.416 Sum_probs=32.7
Q ss_pred cceeeeeeecCCCCccccccccCCcCccchHHHHHHHHH-------hcCCccccccccccc
Q 037907 74 MVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCN-------KKGDITCEICNQIFS 127 (265)
Q Consensus 74 ~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~-------~k~~~~CEiCk~~y~ 127 (265)
...| ||....++..|+.==.| -.|.|..|+.-=.. ......|+.|.....
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C---~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRC---EEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSS---CCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCCCEEEeCCC---CCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 4677 88877665566542234 48999999932111 246889999987653
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=31.72 E-value=22 Score=29.18 Aligned_cols=46 Identities=26% Similarity=0.478 Sum_probs=33.3
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHH---------hcCCccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCN---------KKGDITCEICN 123 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~---------~k~~~~CEiCk 123 (265)
..+..|++|.++++ |+ .|.+--+-.|..||..=+. ..+.+.|..|.
T Consensus 61 g~~d~C~vC~~GG~---Ll---cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 61 GMDEQCRWCAEGGN---LI---CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp SCBCSCSSSCCCSS---EE---ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCeecccCCCCc---EE---eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 34589999998764 32 1234458899999986552 46899999996
No 92
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=30.52 E-value=4 Score=34.77 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=36.7
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHh--cCCccccccccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNK--KGDITCEICNQIFSPN 129 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~--k~~~~CEiCk~~y~~~ 129 (265)
.....|.+|..+++ |+ .|.|--+..|..|+.--+.. +|.+.|..|...-+.+
T Consensus 5 ~~~~~C~~C~~~g~---ll---~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~~ 58 (207)
T 3u5n_A 5 PNEDWCAVCQNGGD---LL---CCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPE 58 (207)
T ss_dssp SSCSSBTTTCCCEE---EE---ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSCS
T ss_pred CCCCCCCCCCCCCc---eE---EcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccccc
Confidence 34578999986653 33 25566689999998665543 5789999998765443
No 93
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=30.06 E-value=31 Score=27.93 Aligned_cols=47 Identities=26% Similarity=0.467 Sum_probs=33.2
Q ss_pred cCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHH------H---hcCCcccccccc
Q 037907 72 MGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWC------N---KKGDITCEICNQ 124 (265)
Q Consensus 72 ~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~------~---~k~~~~CEiCk~ 124 (265)
..+..|++|.++++ |+ .|.+--+-.|.+|+.+=+ . .++.+.|-.|.-
T Consensus 55 g~~~~C~vC~dGG~---Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGN---LI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSE---EE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCe---eE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34578999998754 32 234556899999998742 2 368899999953
No 94
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=29.58 E-value=89 Score=20.35 Aligned_cols=33 Identities=12% Similarity=0.353 Sum_probs=24.4
Q ss_pred ccchhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 037907 217 QESSTFFSFQVSLLQFAGFFLPCYVMARSWYIMQS 251 (265)
Q Consensus 217 ~~~~~~f~~~l~lLRaaGilLP~Yim~~ai~~iq~ 251 (265)
+|+-+.+. -.+.=..|.++|...|+-...-||+
T Consensus 4 ~~aa~~LP--sI~VPlVglvfPai~Mallf~yIe~ 36 (38)
T 1jb0_I 4 SYAASFLP--WIFIPVVCWLMPTVVMGLLFLYIEG 36 (38)
T ss_dssp SSTTTTHH--HHHHHHHHTHHHHHHHHHHHHHHHC
T ss_pred hhhhhhCC--hhhHhHHHHHHHHHHHHHHHHhhcc
Confidence 45544333 4467889999999999988887775
No 95
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=29.13 E-value=75 Score=21.25 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=17.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhhhh
Q 037907 227 VSLLQFAGFFLPCYVMARSWYIMQSRRRRQ 256 (265)
Q Consensus 227 l~lLRaaGilLP~Yim~~ai~~iq~~r~rq 256 (265)
....-..| +|=+.|++-.+...-|||++|
T Consensus 13 ~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 13 SIISAVVG-ILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHCSC
T ss_pred chHHHHHH-HHHHHHHHHHHHhheehhhhh
Confidence 34567778 555555666666666666554
No 96
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=28.56 E-value=18 Score=25.63 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=20.5
Q ss_pred cCcceeeeeeecCC-CCccccccccCCcCccchHHHH
Q 037907 72 MGMVECRICQEEDE-VHNMEAPCACNGTLKFAHRKCI 107 (265)
Q Consensus 72 ~~~~~CRIC~ee~~-~~~Li~PC~CkGslk~vH~~CL 107 (265)
.+...|-+|....+ +..|+ -|. .+-.++.|..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI-~CD-~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAI-LCE-ASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEE-EBT-TTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeE-ecc-cCccccCchhcc
Confidence 44568999998754 33443 342 033489999998
No 97
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=27.53 E-value=5.8 Score=28.74 Aligned_cols=49 Identities=20% Similarity=0.484 Sum_probs=32.1
Q ss_pred ccCcceeeeeeecCCCCcccc--ccccCCcCccchHHHHHHHHHh--cCCccccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEA--PCACNGTLKFAHRKCIQRWCNK--KGDITCEICNQI 125 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~--PC~CkGslk~vH~~CL~rW~~~--k~~~~CEiCk~~ 125 (265)
..+...| ||...+. +.|+. -|.|. ..+.|..|+. +.. ++.+.|+.|...
T Consensus 13 ~~~~~~C-~C~~~~~-g~MI~CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TTSCCCS-TTCCCSC-SSEECCSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCCEE-ECCCCCC-CCEeEeeCCCCC--CccEecccCC--cCcCCCCCEECCCCCcc
Confidence 4456788 8987654 45653 12242 2689999997 433 378999999764
No 98
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=27.37 E-value=23 Score=27.58 Aligned_cols=52 Identities=13% Similarity=0.334 Sum_probs=32.5
Q ss_pred CCCCCCccccccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCccccccccccc
Q 037907 61 EGCSSSSAAALMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFS 127 (265)
Q Consensus 61 ~~~~~~s~~~~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~ 127 (265)
+..++..+........|.-|...-.+...+..- -+.-|..|+ +|..|+..+.
T Consensus 48 ~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~-----~~~wH~~CF----------~C~~C~~~L~ 99 (123)
T 2l4z_A 48 GGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAM-----DSYWHSRCL----------KCSSCQAQLG 99 (123)
T ss_dssp TTTBSCCCCSCSSCSBBSSSSSBCCSSSEEEET-----TEEEETTTS----------BCTTTCCBGG
T ss_pred CCCCCcccccCccCCcCcCCCCCcCCcEEEEeC-----CcEEccccc----------CcCcCCCccc
Confidence 333444444455568899998764443322221 256788886 8999999885
No 99
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=27.05 E-value=26 Score=24.22 Aligned_cols=18 Identities=28% Similarity=0.768 Sum_probs=13.3
Q ss_pred CcccccccccccccccCC
Q 037907 116 DITCEICNQIFSPNYSLP 133 (265)
Q Consensus 116 ~~~CEiCk~~y~~~y~~~ 133 (265)
...|.+|++.|.+...-|
T Consensus 3 ~y~C~~CGyvYd~~~Gdp 20 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLP 20 (55)
T ss_dssp EEEETTTCCEEETTTCBT
T ss_pred cEEeCCCCeEECCCcCCc
Confidence 368999999998654433
No 100
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=26.91 E-value=37 Score=24.60 Aligned_cols=19 Identities=32% Similarity=0.742 Sum_probs=14.1
Q ss_pred CCcccccccccccccccCC
Q 037907 115 GDITCEICNQIFSPNYSLP 133 (265)
Q Consensus 115 ~~~~CEiCk~~y~~~y~~~ 133 (265)
....|.+|++.|.+...-|
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp 24 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDK 24 (70)
T ss_dssp SCEEETTTCCEECTTTCCT
T ss_pred ceEEeCCCCEEEcCCCCCc
Confidence 3578999999998655433
No 101
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.23 E-value=36 Score=24.17 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=28.3
Q ss_pred cccCcceeeeeeecCCCCccccccccCCcCccchHHHHHHHHHhcCCcccccccccccc
Q 037907 70 ALMGMVECRICQEEDEVHNMEAPCACNGTLKFAHRKCIQRWCNKKGDITCEICNQIFSP 128 (265)
Q Consensus 70 ~~~~~~~CRIC~ee~~~~~Li~PC~CkGslk~vH~~CL~rW~~~k~~~~CEiCk~~y~~ 128 (265)
.......|.-|...-....++.. . -+.-|..|+ +|..|+..+..
T Consensus 11 ~~~~~~~C~~C~~~I~~~e~v~a---~--~~~wH~~CF----------~C~~C~~~L~~ 54 (82)
T 2co8_A 11 EAGAGDLCALCGEHLYVLERLCV---N--GHFFHRSCF----------RCHTCEATLWP 54 (82)
T ss_dssp CCCSSCBCSSSCCBCCTTTBCCB---T--TBCCBTTTC----------BCSSSCCBCCT
T ss_pred CCCCCCCCcccCCCcccceEEEE---C--CCeeCCCcC----------EEcCCCCCcCC
Confidence 34456789999876533333321 1 256788886 89999988753
No 102
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.52 E-value=31 Score=25.91 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=13.7
Q ss_pred CCcccccccccccccccC
Q 037907 115 GDITCEICNQIFSPNYSL 132 (265)
Q Consensus 115 ~~~~CEiCk~~y~~~y~~ 132 (265)
....|.+|++.|.+...-
T Consensus 26 ~~y~C~vCGyvYD~~~Gd 43 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGW 43 (81)
T ss_dssp CEEEETTTCCEEETTTCB
T ss_pred ceEEeCCCCEEEcCCcCC
Confidence 357999999999865433
No 103
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=23.44 E-value=14 Score=27.96 Aligned_cols=32 Identities=22% Similarity=0.552 Sum_probs=23.2
Q ss_pred cCCcccccccccccccccCCCCCCCCchhhhhhhcccCc
Q 037907 114 KGDITCEICNQIFSPNYSLPPARSNSDVMAIDIRQAWGP 152 (265)
Q Consensus 114 k~~~~CEiCk~~y~~~y~~~p~r~~~~~~~~~~~~~W~~ 152 (265)
.+...|.+|++.|++ +++++ ..++|....|.+
T Consensus 45 ~g~l~C~~Cg~~~~~--~i~~L-----~epiDVYs~WiD 76 (85)
T 1wii_A 45 TGVISCTVCLEEFQT--PITYL-----SEPVDVYSDWID 76 (85)
T ss_dssp EEEEEESSSCCEEEE--ECCSS-----CCTTHHHHHHHH
T ss_pred EEEEEcccCCCeEEe--ccCcc-----CcchhhHHHHHH
Confidence 366799999999965 55553 456788888853
No 104
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=23.17 E-value=23 Score=24.24 Aligned_cols=14 Identities=29% Similarity=0.947 Sum_probs=11.4
Q ss_pred cccccccccccccc
Q 037907 117 ITCEICNQIFSPNY 130 (265)
Q Consensus 117 ~~CEiCk~~y~~~y 130 (265)
..|.+|++.|.+..
T Consensus 3 ~~C~~CGyvYd~~~ 16 (52)
T 1yk4_A 3 LSCKICGYIYDEDE 16 (52)
T ss_dssp EEESSSSCEEETTT
T ss_pred EEeCCCCeEECCCc
Confidence 58999999997654
No 105
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=22.89 E-value=37 Score=25.78 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=20.8
Q ss_pred CCcccccccccccccccCCCCCCCCchhhhhhhcccC
Q 037907 115 GDITCEICNQIFSPNYSLPPARSNSDVMAIDIRQAWG 151 (265)
Q Consensus 115 ~~~~CEiCk~~y~~~y~~~p~r~~~~~~~~~~~~~W~ 151 (265)
....|.+|++.|.+...-|-....++..--++.++|.
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~ 70 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWC 70 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCC
Confidence 4579999999998654444333333322223345564
No 106
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.38 E-value=18 Score=18.75 Aligned_cols=15 Identities=27% Similarity=0.622 Sum_probs=11.0
Q ss_pred ccccccccccccccc
Q 037907 117 ITCEICNQIFSPNYS 131 (265)
Q Consensus 117 ~~CEiCk~~y~~~y~ 131 (265)
..|+.|+..|.....
T Consensus 3 ~~C~~C~k~f~~~~~ 17 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQ 17 (26)
Confidence 479999999864433
No 107
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=22.68 E-value=3.7 Score=28.70 Aligned_cols=48 Identities=21% Similarity=0.513 Sum_probs=29.6
Q ss_pred ccCcceeeeeeecCCCCcccc--ccccCCcCccchHHHHHHHHHh--cCCcccccccc
Q 037907 71 LMGMVECRICQEEDEVHNMEA--PCACNGTLKFAHRKCIQRWCNK--KGDITCEICNQ 124 (265)
Q Consensus 71 ~~~~~~CRIC~ee~~~~~Li~--PC~CkGslk~vH~~CL~rW~~~--k~~~~CEiCk~ 124 (265)
..+...| ||...+. +.|+. -|.|. ..+.|..|+. +.. ++...|+.|..
T Consensus 7 ~~e~~~C-~C~~~~~-g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC-CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 4456778 8987654 45653 12232 2689999997 433 36788888864
No 108
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.17 E-value=30 Score=17.90 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=9.4
Q ss_pred Cccccccccccc
Q 037907 116 DITCEICNQIFS 127 (265)
Q Consensus 116 ~~~CEiCk~~y~ 127 (265)
...|+.|+..|.
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 357999998885
No 109
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.97 E-value=39 Score=17.47 Aligned_cols=11 Identities=36% Similarity=1.210 Sum_probs=9.3
Q ss_pred ccccccccccc
Q 037907 117 ITCEICNQIFS 127 (265)
Q Consensus 117 ~~CEiCk~~y~ 127 (265)
..|++|+..|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 57999999986
No 110
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=20.96 E-value=32 Score=17.62 Aligned_cols=12 Identities=25% Similarity=0.847 Sum_probs=9.4
Q ss_pred cccccccccccc
Q 037907 117 ITCEICNQIFSP 128 (265)
Q Consensus 117 ~~CEiCk~~y~~ 128 (265)
..|++|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 369999998853
Done!