Your job contains 1 sequence.
>037910
ILRKEDCGEYNVHGFSIRLRKIKNKNQESEHHPSLLIEFIIMGLSTNQMKNRVSVESKKF
KAPSSRTNKKRKFEGEDQAAFPFMKKPLGQSQPPKQEQDRKTASAVEIKCSDATRTLIRE
RLAEAFSKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMCPFLFNVKDPKNPDFWRK
VLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSVVGEKELECDAQ
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037910
(235 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064195 - symbol:TFIIS "transcript elongation ... 253 1.2e-21 1
TAIR|locus:2052351 - symbol:AT2G42730 species:3702 "Arabi... 205 1.9e-15 1
TAIR|locus:2124097 - symbol:AT4G18720 species:3702 "Arabi... 191 4.2e-15 1
TAIR|locus:504954948 - symbol:AT5G42325 species:3702 "Ara... 182 3.8e-14 1
FB|FBgn0030663 - symbol:CG8117 species:7227 "Drosophila m... 134 7.4e-09 1
UNIPROTKB|F1NP36 - symbol:TCEA1 "Uncharacterized protein"... 143 7.3e-08 1
UNIPROTKB|F1NP37 - symbol:TCEA1 "Uncharacterized protein"... 134 7.3e-07 1
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 134 9.4e-07 1
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 128 4.6e-06 1
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 128 4.6e-06 1
UNIPROTKB|Q5JRI7 - symbol:TCEA2 "Transcription elongation... 126 4.7e-06 1
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 127 6.0e-06 1
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 126 8.1e-06 1
RGD|1309880 - symbol:Tcea1 "transcription elongation fact... 126 8.2e-06 1
FB|FBgn0010422 - symbol:TfIIS "RNA polymerase II elongati... 118 8.5e-06 2
UNIPROTKB|Q148K0 - symbol:TCEA2 "Transcription elongation... 125 1.1e-05 1
UNIPROTKB|F1PPX8 - symbol:TCEA2 "Uncharacterized protein"... 124 1.1e-05 1
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 124 1.4e-05 1
UNIPROTKB|F1MIT2 - symbol:TCEA1 "Transcription elongation... 123 1.6e-05 1
UNIPROTKB|Q29RL9 - symbol:TCEA1 "Transcription elongation... 123 1.9e-05 1
UNIPROTKB|F1RSG8 - symbol:TCEA1 "Uncharacterized protein"... 122 2.4e-05 1
UNIPROTKB|G1K224 - symbol:TCEA2 "Transcription elongation... 122 2.5e-05 1
UNIPROTKB|D4A6D1 - symbol:Tcea2 "Transcription elongation... 120 3.4e-05 1
UNIPROTKB|F1NBF9 - symbol:TCEA2 "Uncharacterized protein"... 121 3.4e-05 1
UNIPROTKB|E2QVN6 - symbol:TCEA1 "Uncharacterized protein"... 120 4.2e-05 1
UNIPROTKB|P23193 - symbol:TCEA1 "Transcription elongation... 119 5.5e-05 1
UNIPROTKB|G5E5M1 - symbol:PHF3 "Uncharacterized protein" ... 127 8.9e-05 1
UNIPROTKB|I3L6H4 - symbol:I3L6H4 "Uncharacterized protein... 98 9.3e-05 1
UNIPROTKB|E1BVY1 - symbol:PHF3 "Uncharacterized protein" ... 132 0.00012 2
UNIPROTKB|E7ER40 - symbol:PHF3 "PHD finger protein 3" spe... 122 0.00013 1
UNIPROTKB|E7EVH3 - symbol:PHF3 "PHD finger protein 3" spe... 122 0.00016 1
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 113 0.00028 1
UNIPROTKB|Q92576 - symbol:PHF3 "PHD finger protein 3" spe... 122 0.00034 1
MGI|MGI:1196908 - symbol:Tcea3 "transcription elongation ... 113 0.00037 1
RGD|1311369 - symbol:Tcea3 "transcription elongation fact... 113 0.00037 1
RGD|1304925 - symbol:Phf3 "PHD finger protein 3" species:... 121 0.00057 2
UNIPROTKB|E2R727 - symbol:PHF3 "Uncharacterized protein" ... 120 0.00058 1
>TAIR|locus:2064195 [details] [associations]
symbol:TFIIS "transcript elongation factor IIS"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003746 "translation elongation factor
activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0010162 "seed
dormancy process" evidence=RCA;IMP] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=IMP;RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IMP] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0009739 GO:GO:0009845
GO:GO:0003746 GO:GO:0009910 EMBL:AC005499 GO:GO:0010162
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0034243 Gene3D:1.20.930.10
SUPFAM:SSF47676 KO:K03145 TIGRFAMs:TIGR01385 HSSP:P23193
OMA:LEIWKKV UniGene:At.13130 EMBL:AY150517 EMBL:AK117557
IPI:IPI00532116 PIR:E84806 RefSeq:NP_181390.1
ProteinModelPortal:Q9ZVH8 SMR:Q9ZVH8 IntAct:Q9ZVH8 STRING:Q9ZVH8
PRIDE:Q9ZVH8 EnsemblPlants:AT2G38560.1 GeneID:818438
KEGG:ath:AT2G38560 TAIR:At2g38560 InParanoid:Q9ZVH8
PhylomeDB:Q9ZVH8 ProtClustDB:CLSN2683212 Genevestigator:Q9ZVH8
Uniprot:Q9ZVH8
Length = 378
Score = 253 (94.1 bits), Expect = 1.2e-21, P = 1.2e-21
Identities = 66/183 (36%), Positives = 95/183 (51%)
Query: 47 NQMKNRVSVESKKFKAPSSRTNKKRKFEGEDQAAFPFMKKPLGQS--QPPKQEQDRKTAS 104
N++ V +E K P + K + QA QS + P + +
Sbjct: 144 NKVVTGVKIERK---VPDIKVTNGTKIDYRGQAVKDEKVSKDNQSSMKAPAKAANAPPKL 200
Query: 105 AVEIKCSDATRTLIRERLAEAFSKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMC- 163
+KC+D R IRE L EA +VAGE ++ E+ E V A DP+ VAVSVES++F+ +
Sbjct: 201 TAMLKCNDPVRDKIRELLVEALCRVAGEADDYER-ESVNASDPLRVAVSVESLMFEKLGR 259
Query: 164 ----------PFLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIRE 213
+FN++D NPD R+VL GE+ PE L+T E+MASD+R+ N QI+E
Sbjct: 260 STGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAEDMASDKRKQENNQIKE 319
Query: 214 DAL 216
AL
Sbjct: 320 KAL 322
>TAIR|locus:2052351 [details] [associations]
symbol:AT2G42730 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001810 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF00646 Pfam:PF07500
PROSITE:PS50181 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 SUPFAM:SSF81383 InterPro:IPR006566
SMART:SM00579 Gene3D:1.10.472.30 SUPFAM:SSF46942 InterPro:IPR027191
PANTHER:PTHR32555 InterPro:IPR013101 Pfam:PF07723 IPI:IPI00519130
RefSeq:NP_181801.1 UniGene:At.36975 ProteinModelPortal:F4IP72
SMR:F4IP72 PRIDE:F4IP72 EnsemblPlants:AT2G42730.1 GeneID:818873
KEGG:ath:AT2G42730 Uniprot:F4IP72
Length = 737
Score = 205 (77.2 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 52/121 (42%), Positives = 71/121 (58%)
Query: 109 KCSDATRTLIRERLAEAFSKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNM-C---P 164
K D+ R +RE L + KVA E+ + E K +V ACDP VAVSVES +F+ + C P
Sbjct: 601 KTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEKLGCFMGP 660
Query: 165 -------FLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALA 217
LFN+ D NPD RKVL+GE+ E LVT +EM S++ Q ++I+E+A
Sbjct: 661 HKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQRIKENARF 720
Query: 218 K 218
K
Sbjct: 721 K 721
>TAIR|locus:2124097 [details] [associations]
symbol:AT4G18720 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF07500 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00509 SMART:SM00510 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 EMBL:AL161549 GO:GO:0008270
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 EMBL:AL035526
UniGene:At.22875 HOGENOM:HOG000195015 KO:K03145 IPI:IPI00529744
PIR:T04864 RefSeq:NP_193607.1 ProteinModelPortal:Q9SN41 SMR:Q9SN41
EnsemblPlants:AT4G18720.1 GeneID:827606 KEGG:ath:AT4G18720
TAIR:At4g18720 eggNOG:KOG1105 InParanoid:Q9SN41 PhylomeDB:Q9SN41
ProtClustDB:CLSN2685449 ArrayExpress:Q9SN41 Genevestigator:Q9SN41
Uniprot:Q9SN41
Length = 266
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 52/117 (44%), Positives = 65/117 (55%)
Query: 109 KCSDATRTLIRERLAEAFSKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNM-C---P 164
K D+ R +RE L + +KVA EV + E K +V ACDP VAVSVE+ +F+N+ C P
Sbjct: 112 KTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFENLGCFMGP 171
Query: 165 -------FLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASD-ERQSRNKQIRE 213
LFN+ D NPD RKVLLGE+ E LV EEM S SR + E
Sbjct: 172 QKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMGSSWYTNSRRNPLYE 228
>TAIR|locus:504954948 [details] [associations]
symbol:AT5G42325 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 EMBL:CP002688
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
KO:K03145 IPI:IPI00542827 RefSeq:NP_680377.1 UniGene:At.65714
ProteinModelPortal:F4K1I5 SMR:F4K1I5 PRIDE:F4K1I5
EnsemblPlants:AT5G42325.1 GeneID:834238 KEGG:ath:AT5G42325
OMA:SADMIMT PhylomeDB:F4K1I5 Uniprot:F4K1I5
Length = 233
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 47/111 (42%), Positives = 63/111 (56%)
Query: 109 KCSDATRTLIRERLAEAFSKVAGEVEEMEKKEQVRA-CDPVGVAVSVESVLFKNMCPFLF 167
K D+ R + E L + +KVA EV + E K +V CDP VAVSVES + LF
Sbjct: 111 KTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM-----SILF 165
Query: 168 NVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAK 218
N+ D NPD RKVL+GE+ E LV +EM S++ Q ++I+E A K
Sbjct: 166 NMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQKEVQRIKERARFK 216
>FB|FBgn0030663 [details] [associations]
symbol:CG8117 species:7227 "Drosophila melanogaster"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017890 Pfam:PF01096 Pfam:PF07500 PIRSF:PIRSF006704
PROSITE:PS51133 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0022008 EMBL:AE014298 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003676 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0032784 eggNOG:COG1594 KO:K03145 HSSP:P23193
GeneTree:ENSGT00390000017794 EMBL:BT022128 EMBL:BT023150
RefSeq:NP_573049.2 UniGene:Dm.26636 SMR:Q9VXS6 IntAct:Q9VXS6
MINT:MINT-861025 STRING:Q9VXS6 EnsemblMetazoa:FBtr0074050
GeneID:32499 KEGG:dme:Dmel_CG8117 UCSC:CG8117-RA
FlyBase:FBgn0030663 InParanoid:Q9VXS6 OMA:PEELGSN OrthoDB:EOG4WSTSW
GenomeRNAi:32499 NextBio:778778 Uniprot:Q9VXS6
Length = 162
Score = 134 (52.2 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 40/132 (30%), Positives = 69/132 (52%)
Query: 106 VEIKCSDATRTLIRERLAEAFSKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMCPF 165
+ IKC + T ++ + G+ ++M K + D + ++ V +KN
Sbjct: 5 IRIKCREMLATALK---SGNMPPGCGDPDDMAAKLE----DAIYGDLNGCKVKYKNRIRS 57
Query: 166 -LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE-RQSRNKQIREDALAKIRDHS 223
L N++DPKNP+ +K LLG++ PE L PEEMASD+ +Q R K + +D++ +
Sbjct: 58 RLANLRDPKNPELRQKFLLGQITPEELSKMTPEEMASDDMKQMRQKYV-QDSINAAQMAK 116
Query: 224 VVGEK--ELECD 233
V G K + +C+
Sbjct: 117 VQGTKTDQFKCE 128
>UNIPROTKB|F1NP36 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:AADN02021697 EMBL:AADN02021698 IPI:IPI00598591
Ensembl:ENSGALT00000024655 ArrayExpress:F1NP36 Uniprot:F1NP36
Length = 309
Score = 143 (55.4 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 54/219 (24%), Positives = 100/219 (45%)
Query: 14 GFSIR-LRKIKNKNQESEHHPSLLIEF--IIMGLSTNQMKNRVSVESKKFKAPSSRTNKK 70
G S+ +RK + + SL+ + ++ G ST+ + S E KK A SS+ + +
Sbjct: 51 GMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTD----KDSEEKKKEPASSSQNSPE 106
Query: 71 RKFEGEDQAAFPFMKKP---LGQSQPPKQEQDRKTASAVEIKCSDATRTLIRERLAEAFS 127
+ E + K+ S P + T+ +V +KC + +R + +
Sbjct: 107 AREESSSSSNSSSRKEEGSAPSNSFIPSFPRAPSTSDSVRVKCREMLSAALRT--GDDYI 164
Query: 128 KVAGEVEEMEKK-EQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGE 185
+ + EE+ + E+ +A P+ + + +KN + N+KD KNP+ + VL G
Sbjct: 165 AIGADEEELGSQIEEAKA--PIFQELKNTDMKYKNRVRSRIANLKDAKNPNLRKNVLCGN 222
Query: 186 VKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
+ P+ EEMASDE + K + ++A IR+H +
Sbjct: 223 IPPDKFAKMTAEEMASDELKEMRKNLTKEA---IREHQM 258
>UNIPROTKB|F1NP37 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AADN02021697 EMBL:AADN02021698
IPI:IPI00575645 Ensembl:ENSGALT00000024654 ArrayExpress:F1NP37
Uniprot:F1NP37
Length = 280
Score = 134 (52.2 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 53/218 (24%), Positives = 96/218 (44%)
Query: 14 GFSIR-LRKIKNKNQESEHHPSLLIEF--IIMGLSTNQMKNRVSVESKKFKAPSSRTNKK 70
G S+ +RK + + SL+ + ++ G ST+ + S E KK A SS+ + +
Sbjct: 26 GMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTD----KDSEEKKKEPASSSQNSPE 81
Query: 71 RKFEGEDQAAFPFMKKP---LGQSQPPKQEQDRKTASAVEIKCSDATRTLIRERLAEAFS 127
+ E + K+ S P + T+ +V +KC + +R + +
Sbjct: 82 AREESSSSSNSSSRKEEGSAPSNSFIPSFPRAPSTSDSVRVKCREMLSAALRT--GDDYI 139
Query: 128 KVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEV 186
+ + EE+E P+ + + +KN + N+KD KNP+ + VL G +
Sbjct: 140 AIGADEEELETIHT-----PIFQELKNTDMKYKNRVRSRIANLKDAKNPNLRKNVLCGNI 194
Query: 187 KPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
P+ EEMASDE + K + ++A IR+H +
Sbjct: 195 PPDKFAKMTAEEMASDELKEMRKNLTKEA---IREHQM 229
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 134 (52.2 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 36/124 (29%), Positives = 61/124 (49%)
Query: 102 TASAVEIKCSDATRTLIRERLAEAFSKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKN 161
T+ +V IKC + ++ + + + + +E+ Q+ C + + + +KN
Sbjct: 144 TSDSVRIKCREMLSNALQT--GDDYITIGSDCDELGA--QIEEC--IFLEFKNTDMKYKN 197
Query: 162 MCPF-LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIR 220
+ N+KD KNP+ R VL G V P+ + EEMASDE + K + ++A IR
Sbjct: 198 RVRSRISNLKDAKNPNLRRNVLCGNVSPDRIAKMTAEEMASDELKEMRKNLTKEA---IR 254
Query: 221 DHSV 224
DH V
Sbjct: 255 DHQV 258
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 128 (50.1 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 47/147 (31%), Positives = 65/147 (44%)
Query: 85 KKPLGQSQPPKQEQDRK--TASAVEIKCSDATRTLIRERLAEAFSK----VAGEVEEMEK 138
KKP PP+ + T V I C DA R RE L A VA V
Sbjct: 112 KKP----DPPRTSSTPRITTFPQVPITC-DAVRNKCREMLTLALQTDHDHVAVGVSCEHL 166
Query: 139 KEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEVKPETLVTALPE 197
Q+ C + + V + +KN + N+KD KNP R VL G + P+ + E
Sbjct: 167 SSQIEEC--IFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSE 224
Query: 198 EMASDERQSRNKQIREDALAKIRDHSV 224
EMASDE + K + ++A IR+H +
Sbjct: 225 EMASDELKEIRKAMTKEA---IREHQM 248
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 128 (50.1 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 47/147 (31%), Positives = 65/147 (44%)
Query: 85 KKPLGQSQPPKQEQDRK--TASAVEIKCSDATRTLIRERLAEAFSK----VAGEVEEMEK 138
KKP PP+ + T V I C DA R RE L A VA V
Sbjct: 112 KKP----DPPRTSSTPRITTFPQVPITC-DAVRNKCREMLTLALQTDHDHVAVGVSCEHL 166
Query: 139 KEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEVKPETLVTALPE 197
Q+ C + + V + +KN + N+KD KNP R VL G + P+ + E
Sbjct: 167 SSQIEEC--IFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSE 224
Query: 198 EMASDERQSRNKQIREDALAKIRDHSV 224
EMASDE + K + ++A IR+H +
Sbjct: 225 EMASDELKEIRKAMTKEA---IREHQM 248
>UNIPROTKB|Q5JRI7 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
UniGene:Hs.505004 UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00647399
SMR:Q5JRI7 STRING:Q5JRI7 Ensembl:ENST00000339217
Ensembl:ENST00000440819 Uniprot:Q5JRI7
Length = 246
Score = 126 (49.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 47/153 (30%), Positives = 67/153 (43%)
Query: 78 QAAFPFMKKPLGQSQPPKQEQDRKTA-SAVEIKCSDATRTLIRERLAEAFSKVAGEVE-- 134
+A P K+P P R T V + C DA R RE L A V
Sbjct: 78 EAPDPSRKRP---ELPRAPSTPRITTFPPVPVTC-DAVRNKCREMLTAALQTDHDHVAIG 133
Query: 135 -EMEK-KEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEVKPETL 191
+ E+ Q+ C + V + +KN + N+KD KNPD R VL G + P+ +
Sbjct: 134 ADCERLSAQIEEC--IFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQI 191
Query: 192 VTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
EEMASDE + K + ++A IR+H +
Sbjct: 192 AVMTSEEMASDELKEIRKAMTKEA---IREHQM 221
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 127 (49.8 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 47/147 (31%), Positives = 65/147 (44%)
Query: 85 KKPLGQSQPPKQEQDRK--TASAVEIKCSDATRTLIRERLAEAFSK----VAGEVEEMEK 138
KKP PP+ + T V I C DA R RE L A VA V
Sbjct: 112 KKP----DPPRTPSTPRITTFPQVPITC-DAVRNKCREMLTLALQTDHDHVAVGVNCEHL 166
Query: 139 KEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEVKPETLVTALPE 197
Q+ C + + V + +KN + N+KD KNP R VL G + P+ + E
Sbjct: 167 SSQIEEC--IFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSE 224
Query: 198 EMASDERQSRNKQIREDALAKIRDHSV 224
EMASDE + K + ++A IR+H +
Sbjct: 225 EMASDELKEIRKAMTKEA---IREHQM 248
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 126 (49.4 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 47/153 (30%), Positives = 67/153 (43%)
Query: 78 QAAFPFMKKPLGQSQPPKQEQDRKTA-SAVEIKCSDATRTLIRERLAEAFSKVAGEVE-- 134
+A P K+P P R T V + C DA R RE L A V
Sbjct: 105 EAPDPSRKRP---ELPRAPSTPRITTFPPVPVTC-DAVRNKCREMLTAALQTDHDHVAIG 160
Query: 135 -EMEK-KEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEVKPETL 191
+ E+ Q+ C + V + +KN + N+KD KNPD R VL G + P+ +
Sbjct: 161 ADCERLSAQIEEC--IFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQI 218
Query: 192 VTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
EEMASDE + K + ++A IR+H +
Sbjct: 219 AVMTSEEMASDELKEIRKAMTKEA---IREHQM 248
>RGD|1309880 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 OMA:MKNPNLR EMBL:BC099141 IPI:IPI00358677
RefSeq:NP_001020906.1 RefSeq:XP_002728223.1 RefSeq:XP_003752832.1
UniGene:Rn.205137 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0
SMR:Q4KLL0 STRING:Q4KLL0 PhosphoSite:Q4KLL0 PRIDE:Q4KLL0
Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453
KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880
GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080
Genevestigator:Q4KLL0 GermOnline:ENSRNOG00000005869 Uniprot:Q4KLL0
Length = 301
Score = 126 (49.4 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 54/217 (24%), Positives = 93/217 (42%)
Query: 14 GFSIR-LRKIKNKNQESEHHPSLLIEF--IIMGLSTNQMKNRVSVESKKFKAPSSRTNKK 70
G S+ +RK + + SL+ + ++ G ST+ + S E KK A SS+ + +
Sbjct: 47 GMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTD----KDSEEKKKEPAISSQNSPE 102
Query: 71 RKFEGEDQAAFPFMKKPLGQSQPPKQEQDR--KTASAVEIKCSDATRTLIRERLAEAFSK 128
+ E + K R T+ +V +KC R ++ L
Sbjct: 103 AREESSSSSHVSSRKDETNARDTYVSSFPRAPSTSDSVRLKC----REMLAAALRTGDDY 158
Query: 129 VAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEVK 187
VA +E E Q+ + + + + +KN + N+KD KNP+ + VL G +
Sbjct: 159 VAIGADEEELGSQIE--EAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIP 216
Query: 188 PETLVTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
P+ EEMASDE + K + ++A IR+H +
Sbjct: 217 PDLFARMTAEEMASDELKEMRKNLTKEA---IREHQM 250
>FB|FBgn0010422 [details] [associations]
symbol:TfIIS "RNA polymerase II elongation factor"
species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
EMBL:AE014134 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
KO:K03145 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:X53670 EMBL:L26091 EMBL:AY051843
PIR:S55899 RefSeq:NP_476967.1 UniGene:Dm.3045
ProteinModelPortal:P20232 SMR:P20232 DIP:DIP-23586N
MINT:MINT-924728 STRING:P20232 PaxDb:P20232 PRIDE:P20232
EnsemblMetazoa:FBtr0080722 EnsemblMetazoa:FBtr0332475 GeneID:34883
KEGG:dme:Dmel_CG3710 CTD:34883 FlyBase:FBgn0010422
InParanoid:P20232 OrthoDB:EOG4GXD3M PhylomeDB:P20232
GenomeRNAi:34883 NextBio:790684 Bgee:P20232 GermOnline:CG3710
Uniprot:P20232
Length = 313
Score = 118 (46.6 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 42/128 (32%), Positives = 62/128 (48%)
Query: 111 SDATRTLIRERLAEAFSKVAGEVEEM--EKKEQVRAC-DPVGVAVSVESVLFKNMCPF-L 166
+DA R RE LA A K+ GEV E E +E D + + + +KN +
Sbjct: 150 TDAVRIKCREMLATAL-KI-GEVPEGCGEPEEMAAELEDAIYSEFNNTDMKYKNRIRSRV 207
Query: 167 FNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSVVG 226
N+KDPKNP + G V + L PEEMASDE + ++ ++A+ + +V G
Sbjct: 208 ANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQG 267
Query: 227 EKE--LEC 232
K L+C
Sbjct: 268 TKTDLLKC 275
Score = 44 (20.5 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 45 STNQMKNRVSVESKKFKAPSSRTNKKRKFEGE---DQAAFP 82
ST+ K+ S+ K K+ SS ++K ++ +G Q +FP
Sbjct: 106 STSAAKSSSSISGKD-KSSSSSSSKDKEKKGSTSSSQTSFP 145
>UNIPROTKB|Q148K0 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 EMBL:BC118232 IPI:IPI00711628
RefSeq:NP_001068797.1 UniGene:Bt.26042 ProteinModelPortal:Q148K0
SMR:Q148K0 STRING:Q148K0 PRIDE:Q148K0 GeneID:507729 KEGG:bta:507729
CTD:6919 InParanoid:Q148K0 NextBio:20868199 Uniprot:Q148K0
Length = 300
Score = 125 (49.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 49/153 (32%), Positives = 66/153 (43%)
Query: 78 QAAFPFMKKPLGQSQPPKQEQDRKTA-SAVEIKCSDATRTLIRERLAEAFSKVAGEVEEM 136
+A P K+P P R T V + C DA RT RE L A V
Sbjct: 106 EAQDPSRKRP---ELPRMPSTPRITTFPPVPVTC-DAVRTKCREMLTAALQTDHDHVAIG 161
Query: 137 EKKE----QVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEVKPETL 191
E Q+ C + V + +KN L N+KD KNP RKVL G + P+ +
Sbjct: 162 ADCECLAGQIEEC--IFRDVGNTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQI 219
Query: 192 VTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
EEMASDE + K + ++A IR+H +
Sbjct: 220 AVMTSEEMASDELKEIRKAMTKEA---IREHQM 249
>UNIPROTKB|F1PPX8 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 OMA:AVGADCE
EMBL:AAEX03014175 Ensembl:ENSCAFT00000024122 Uniprot:F1PPX8
Length = 274
Score = 124 (48.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 59/219 (26%), Positives = 93/219 (42%)
Query: 14 GFSIRLRKIKNKNQESEHHPSLLIEFIIMGLSTNQMKNRVSVESKKFKAPSSRTNKKRKF 73
G S+ + ++ ++E LI+ L + K R E ++ P + ++K+
Sbjct: 26 GMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKAR---EQRRAGPPPTSSSKEAP- 81
Query: 74 EGEDQAAFPFMKKPLGQSQPPKQEQDRKTA-SAVEIKCSDATRTLIRERLAEAFSK---- 128
E +D P K+P P R T V + C DA R RE L A
Sbjct: 82 EAKD----PSRKRP---ELPRVPSAPRITTFPPVPVTC-DAVRNKCREMLTAALQTDHDH 133
Query: 129 --VAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGE 185
V + E + Q+ C + V + +KN + N+KD KNPD R VL G
Sbjct: 134 MAVGADCEGLSA--QIEEC--IFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGV 189
Query: 186 VKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
+ P+ + EEMASDE + K + ++A IR+H +
Sbjct: 190 ITPQQIAVMTSEEMASDELKEIRKAMTKEA---IREHQM 225
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 54/217 (24%), Positives = 92/217 (42%)
Query: 14 GFSIR-LRKIKNKNQESEHHPSLLIEF--IIMGLSTNQMKNRVSVESKKFKAPSSRTNKK 70
G S+ LRK + + SL+ + ++ G ST++ E KK A SS+ + +
Sbjct: 47 GMSVNALRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDPE----EKKKEPAISSQNSPE 102
Query: 71 RKFEGEDQAAFPFMKKPLGQSQPPKQEQDR--KTASAVEIKCSDATRTLIRERLAEAFSK 128
+ E + K R T+ +V +KC R ++ L
Sbjct: 103 AREESSSSSNVSSRKDETNARDTYVSSFPRAPSTSDSVRLKC----REMLAAALRTGDDY 158
Query: 129 VAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEVK 187
VA +E E Q+ + + + + +KN + N+KD KNP+ + VL G +
Sbjct: 159 VAIGADEEELGSQIE--EAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIP 216
Query: 188 PETLVTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
P+ EEMASDE + K + ++A IR+H +
Sbjct: 217 PDLFARMTAEEMASDELKEMRKNLTKEA---IREHQM 250
>UNIPROTKB|F1MIT2 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
IPI:IPI00689567 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:DAAA02038289 EMBL:DAAA02038290
Ensembl:ENSBTAT00000004499 Uniprot:F1MIT2
Length = 280
Score = 123 (48.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 50/217 (23%), Positives = 93/217 (42%)
Query: 14 GFSIR-LRKIKNKNQESEHHPSLLIEF--IIMGLSTNQMKNRVSVESKKFKAPSSRTNKK 70
G S+ +RK + + SL+ + ++ G ST+ + S E KK A +S+ + +
Sbjct: 26 GMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTD----KDSEEKKKDTAVTSQNSPE 81
Query: 71 RKFEGEDQAAFPFMKKPLGQSQPPKQEQDR--KTASAVEIKCSDATRTLIRERLAEAFSK 128
+ E K R T+ +V +KC + +R + +
Sbjct: 82 AREESSSSGNMSSRKDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALRT--GDDYIA 139
Query: 129 VAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEVK 187
+ + EE+ Q+ + + + + +KN + N+KD KNP+ + VL G +
Sbjct: 140 IGADEEELGS--QIE--EAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIP 195
Query: 188 PETLVTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
P+ EEMASDE + K + ++A IR+H +
Sbjct: 196 PDLFARMTAEEMASDELKEMRKNLTKEA---IREHQM 229
>UNIPROTKB|Q29RL9 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 EMBL:BC114117 IPI:IPI00689567 RefSeq:NP_001039390.1
UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:Q29RL9
PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145
OrthoDB:EOG4SN1PH NextBio:20867283 TIGRFAMs:TIGR01385
Uniprot:Q29RL9
Length = 301
Score = 123 (48.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 50/217 (23%), Positives = 93/217 (42%)
Query: 14 GFSIR-LRKIKNKNQESEHHPSLLIEF--IIMGLSTNQMKNRVSVESKKFKAPSSRTNKK 70
G S+ +RK + + SL+ + ++ G ST+ + S E KK A +S+ + +
Sbjct: 47 GMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTD----KDSEEKKKDTAVTSQNSPE 102
Query: 71 RKFEGEDQAAFPFMKKPLGQSQPPKQEQDR--KTASAVEIKCSDATRTLIRERLAEAFSK 128
+ E K R T+ +V +KC + +R + +
Sbjct: 103 AREESSSSGNMSSRKDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALRT--GDDYIA 160
Query: 129 VAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEVK 187
+ + EE+ Q+ + + + + +KN + N+KD KNP+ + VL G +
Sbjct: 161 IGADEEELGS--QIE--EAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIP 216
Query: 188 PETLVTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
P+ EEMASDE + K + ++A IR+H +
Sbjct: 217 PDLFARMTAEEMASDELKEMRKNLTKEA---IREHQM 250
>UNIPROTKB|F1RSG8 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 CTD:6917 KO:K03145
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495
Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724
Uniprot:F1RSG8
Length = 300
Score = 122 (48.0 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 51/216 (23%), Positives = 96/216 (44%)
Query: 14 GFSIR-LRKIKNKNQESEHHPSLLIEF--IIMGLSTNQMKNRVSVESKKFKAPSSRTNKK 70
G S+ +RK + + SL+ + ++ G ST+ K+ S E KK A +S+ + +
Sbjct: 47 GMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTD--KD--SEEKKKDTAITSQNSPE 102
Query: 71 RKFEGEDQAAFPFMKKPLGQSQPPKQ-EQDRKTASAVEIKCSDATRTLIRERLAEAFSKV 129
+ E +P + + T+ +V +KC + +R E + +
Sbjct: 103 AREESSSGHGSSRKDEPNARDTYVSSFPRAPSTSDSVRLKCREMLAAALRT--GEDYIAI 160
Query: 130 AGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEVKP 188
+ EE+ Q+ + + + + +KN + N+KD KNP+ + VL G + P
Sbjct: 161 GADEEELGS--QIE--EAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPP 216
Query: 189 ETLVTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
+ EEMASDE + K + ++A IR+H +
Sbjct: 217 DLFARMTAEEMASDELKEMRKNLTKEA---IREHQM 249
>UNIPROTKB|G1K224 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005813 "centrosome" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:DAAA02036215
EMBL:DAAA02036214 Ensembl:ENSBTAT00000029107 Uniprot:G1K224
Length = 303
Score = 122 (48.0 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 42/131 (32%), Positives = 61/131 (46%)
Query: 102 TASAVEIKCSDATRTLIRERLAEAFSK------VAGEVEEMEKK-EQVRACDPVGVAVSV 154
T V + C DA RT RE L A + + E + + E+ VG +
Sbjct: 129 TFPPVPVTC-DAVRTKCREMLTAALQTDHDHVAIGADCECLAGQIEEYILWQGVGFGTDM 187
Query: 155 ESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIRE 213
+ +KN L N+KD KNP RKVL G + P+ + EEMASDE + K + +
Sbjct: 188 K---YKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK 244
Query: 214 DALAKIRDHSV 224
+A IR+H +
Sbjct: 245 EA---IREHQM 252
>UNIPROTKB|D4A6D1 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385 IPI:IPI00950445
Ensembl:ENSRNOT00000064494 ArrayExpress:D4A6D1 Uniprot:D4A6D1
Length = 273
Score = 120 (47.3 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 46/147 (31%), Positives = 66/147 (44%)
Query: 85 KKPLGQSQPPKQEQDRK--TASAVEIKCSDATRTLIRERLAEAFSK----VAGEVEEMEK 138
KKP PP+ + T V I C DA R RE L A VA V
Sbjct: 86 KKP----DPPRTSSTPRITTFPQVPITC-DAVRNKCREMLTLALQTDHDHVAVGVSCEHL 140
Query: 139 KEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKVLLGEVKPETLVTALPE 197
Q+ + + + +S + +KN + N+KD KNP R VL G + P+ + E
Sbjct: 141 SSQIE--EYILLDLSGSQIGYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSE 198
Query: 198 EMASDERQSRNKQIREDALAKIRDHSV 224
EMASDE + K + ++A IR+H +
Sbjct: 199 EMASDELKEIRKAMTKEA---IREHQM 222
>UNIPROTKB|F1NBF9 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:AADN02019186
EMBL:AADN02019187 IPI:IPI00585750 Ensembl:ENSGALT00000009608
Uniprot:F1NBF9
Length = 312
Score = 121 (47.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 59/223 (26%), Positives = 97/223 (43%)
Query: 14 GFSIR-LRKIKNKNQESEHHPSLLIEFI-IMGLSTNQMKNRVSVESKK-FKAPSSRTNKK 70
G S+ LRK + + SL+ + ++ L ++ K S E KK P+S + K
Sbjct: 75 GMSVNALRKQSSDEEVIALAKSLIKSWKKLLDLDASEEK---SEEKKKNLSLPTS--SSK 129
Query: 71 RKFEGEDQAAFPFMKKPLGQSQPPKQEQDRK--TASAVEIKCSDATRTLIRERLAEA--- 125
DQ++ K + +PPK K T + C DA R RE L A
Sbjct: 130 ETGNSRDQSS----NK---RQEPPKTPTTPKITTFPPAPVTC-DAVRNKCREMLTTALQA 181
Query: 126 ---FSKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMCPF-LFNVKDPKNPDFWRKV 181
+ + + E + Q+ C + + + +KN + N+KD KNP+ + V
Sbjct: 182 DDDYIAIGADCEHIAA--QIEEC--IYQDIKNTDMKYKNRVRSRISNLKDSKNPELKKNV 237
Query: 182 LLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
L G + PE + EEMAS+E + K + ++A IR+H +
Sbjct: 238 LCGAITPEQIAVMTSEEMASNELKEIRKAMTKEA---IREHQM 277
>UNIPROTKB|E2QVN6 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
OMA:MKNPNLR GeneTree:ENSGT00390000017794 EMBL:AAEX03015788
Ensembl:ENSCAFT00000039344 Uniprot:E2QVN6
Length = 301
Score = 120 (47.3 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 37/119 (31%), Positives = 57/119 (47%)
Query: 111 SDATRTLIRERLAEAFSK----VAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMCPF- 165
SD+ R RE LA A VA +E E Q+ + + + + +KN
Sbjct: 137 SDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIE--EAIYQEIRNTDMKYKNRVRSR 194
Query: 166 LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
+ N+KD KNP+ + VL G + P+ EEMASDE + K + ++A IR+H +
Sbjct: 195 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEA---IREHQM 250
>UNIPROTKB|P23193 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0016032 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198
EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995
EMBL:AC100821 EMBL:BC072460 IPI:IPI00218106 IPI:IPI00333215
PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1
RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI
PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 DIP:DIP-48480N
IntAct:P23193 STRING:P23193 PhosphoSite:P23193 DMDM:1174652
PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401
Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3
UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264
HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193
PharmGKB:PA36371 InParanoid:P23193 OMA:MKNPNLR
EvolutionaryTrace:P23193 GenomeRNAi:6917 NextBio:27057
PMAP-CutDB:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1
Genevestigator:P23193 GermOnline:ENSG00000197214 Uniprot:P23193
Length = 301
Score = 119 (46.9 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 36/119 (30%), Positives = 57/119 (47%)
Query: 111 SDATRTLIRERLAEAFSK----VAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMCPF- 165
SD+ R RE LA A +A +E E Q+ + + + + +KN
Sbjct: 137 SDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIE--EAIYQEIRNTDMKYKNRVRSR 194
Query: 166 LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
+ N+KD KNP+ + VL G + P+ EEMASDE + K + ++A IR+H +
Sbjct: 195 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEA---IREHQM 250
>UNIPROTKB|G5E5M1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:DAAA02024858
EMBL:DAAA02024859 UniGene:Bt.20639 Ensembl:ENSBTAT00000025476
NextBio:20873627 Uniprot:G5E5M1
Length = 2025
Score = 127 (49.8 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 52/203 (25%), Positives = 88/203 (43%)
Query: 45 STNQMKNRVSVESKKFKAPSSRTNKKRKFEGEDQAAFPFMKKPLGQSQPPKQEQDRKTAS 104
S+ + +++ ES + +K E + + +K L PP + +A
Sbjct: 859 SSEEKSEKMTKESTTVICTGEKASKPGAHE-KQEIKKKKTEKGLPGVHPPAVPASKPSAD 917
Query: 105 AVEIKCSDATRTLIRERLAEAFSKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMC- 163
+ + + ++ +RL ++ KV EE K + + +KN
Sbjct: 918 QIRQSVRHSLKDILMKRLTDSNLKVP---EEKAAKVATKIEKELFSFFRDTDAKYKNKYR 974
Query: 164 PFLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE------RQSRN------KQI 211
+FN+KDPKN ++KVL GEV P+ L+ PEE+AS E R++R+ K+
Sbjct: 975 SLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQ 1034
Query: 212 REDALAKIRDHSVVGEKELECDA 234
RE I + GE E+E DA
Sbjct: 1035 REVERRPITKITHKGEIEIESDA 1057
>UNIPROTKB|I3L6H4 [details] [associations]
symbol:I3L6H4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00390000017794
Ensembl:ENSSSCT00000029692 Uniprot:I3L6H4
Length = 111
Score = 98 (39.6 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 25/56 (44%), Positives = 32/56 (57%)
Query: 168 NVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE-RQSRN----KQIREDALAK 218
N+KDP+NP R VL G + + EEMASDE R+ RN + IRE +AK
Sbjct: 32 NLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK 87
>UNIPROTKB|E1BVY1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:AADN02002654
EMBL:AADN02002655 IPI:IPI00602717 Ensembl:ENSGALT00000026230
Uniprot:E1BVY1
Length = 2050
Score = 132 (51.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 55/223 (24%), Positives = 95/223 (42%)
Query: 5 EDCGEYNVHGFSIRLRKIKNKNQ-------ESEHHPSLLIE--FIIMGLSTNQMKNRVSV 55
ED G++ V F KN ++ + +H P+ + +I S+ + ++S
Sbjct: 813 EDTGKHKVKIFKRESGDGKNLSESRDSDTKKGQHVPARKVSQTAVIPRRSSEEKGEKISK 872
Query: 56 ESKKFKAPSSRTNKKRKFEGEDQAAFPFMKKPLGQSQPPKQEQDRKTASAVEIKCSDATR 115
ES S+++ K E + + K P + P + +A + + +
Sbjct: 873 ESLSVVEKSTKSGVHEKQEIKKKKN---EKGPTSATHLPNVPASKPSADQIRHSVKQSLK 929
Query: 116 TLIRERLAEAFSKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMC-PFLFNVKDPKN 174
++ +RL ++ K+ EE K R + +KN +FN+KDPKN
Sbjct: 930 EILMKRLTDSSLKIP---EERAAKVATRIERELFSFFRDTDSKYKNKYRSLMFNLKDPKN 986
Query: 175 PDFWRKVLLGEVKPETLVTALPEEMASDE----RQSRNKQIRE 213
++KVL GEV P+ L+ PEE+AS E RQ N+ E
Sbjct: 987 NILFKKVLKGEVTPDHLIKMSPEELASKELAAWRQRENRHTIE 1029
Score = 37 (18.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 196 PEEMASDERQSRNKQIREDALAKIRDHSVVGEKELECDAQ 235
P E + E+++ + E A K ++ EK E +++
Sbjct: 1994 PRETRNPEKKTEKPKPEEQAQEKDKEREKSKEKHRERESE 2033
>UNIPROTKB|E7ER40 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00966918
ProteinModelPortal:E7ER40 SMR:E7ER40 Ensembl:ENST00000515594
ArrayExpress:E7ER40 Bgee:E7ER40 Uniprot:E7ER40
Length = 861
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 51/203 (25%), Positives = 85/203 (41%)
Query: 45 STNQMKNRVSVESKKFKAPSSRTNKKRKFEGEDQAAFPFMKKPLGQSQPPKQEQDRKTAS 104
S+ + ++ ES + +K E ++ K L P + +A
Sbjct: 137 SSEEKSEKIPKESTTVTCTGEKASKPGTHEKQEMKKKKVEKGVLNVH--PAASASKPSAD 194
Query: 105 AVEIKCSDATRTLIRERLAEAFSKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMC- 163
+ + + ++ +RL ++ KV EE K + + +KN
Sbjct: 195 QIRQSVRHSLKDILMKRLTDSNLKVP---EEKAAKVATKIEKELFSFFRDTDAKYKNKYR 251
Query: 164 PFLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE------RQSRN------KQI 211
+FN+KDPKN ++KVL GEV P+ L+ PEE+AS E R++R+ K+
Sbjct: 252 SLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQ 311
Query: 212 REDALAKIRDHSVVGEKELECDA 234
RE I + GE E+E DA
Sbjct: 312 REVERRPITKITHKGEIEIESDA 334
>UNIPROTKB|E7EVH3 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00984758
ProteinModelPortal:E7EVH3 SMR:E7EVH3 Ensembl:ENST00000506783
ArrayExpress:E7EVH3 Bgee:E7EVH3 Uniprot:E7EVH3
Length = 1072
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 51/203 (25%), Positives = 85/203 (41%)
Query: 45 STNQMKNRVSVESKKFKAPSSRTNKKRKFEGEDQAAFPFMKKPLGQSQPPKQEQDRKTAS 104
S+ + ++ ES + +K E ++ K L P + +A
Sbjct: 682 SSEEKSEKIPKESTTVTCTGEKASKPGTHEKQEMKKKKVEKGVLNVH--PAASASKPSAD 739
Query: 105 AVEIKCSDATRTLIRERLAEAFSKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMC- 163
+ + + ++ +RL ++ KV EE K + + +KN
Sbjct: 740 QIRQSVRHSLKDILMKRLTDSNLKVP---EEKAAKVATKIEKELFSFFRDTDAKYKNKYR 796
Query: 164 PFLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE------RQSRN------KQI 211
+FN+KDPKN ++KVL GEV P+ L+ PEE+AS E R++R+ K+
Sbjct: 797 SLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQ 856
Query: 212 REDALAKIRDHSVVGEKELECDA 234
RE I + GE E+E DA
Sbjct: 857 REVERRPITKITHKGEIEIESDA 879
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 113 (44.8 bits), Expect = 0.00028, P = 0.00028
Identities = 32/68 (47%), Positives = 40/68 (58%)
Query: 168 NVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAK--IRDH--S 223
N+KD KNPD R VL G + PE + + EEMAS E K+IR+ AL K IR+H S
Sbjct: 197 NLKDQKNPDLRRNVLCGNISPERIASMTAEEMASPEL----KEIRK-ALTKESIREHQLS 251
Query: 224 VVGEKELE 231
VG E +
Sbjct: 252 KVGGTETD 259
>UNIPROTKB|Q92576 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=NAS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0007275
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
eggNOG:NOG255142 EMBL:AL050329 EMBL:AL354719 EMBL:AF091622
EMBL:D87685 EMBL:BX648268 EMBL:BC113650 EMBL:BC113652
IPI:IPI00170770 IPI:IPI00847550 RefSeq:NP_055968.1
UniGene:Hs.348921 PDB:2DME PDBsum:2DME ProteinModelPortal:Q92576
SMR:Q92576 IntAct:Q92576 STRING:Q92576 PhosphoSite:Q92576
DMDM:34098662 PaxDb:Q92576 PeptideAtlas:Q92576 PRIDE:Q92576
Ensembl:ENST00000262043 Ensembl:ENST00000393387 GeneID:23469
KEGG:hsa:23469 UCSC:uc003pen.2 CTD:23469 GeneCards:GC06P064403
HGNC:HGNC:8921 HPA:HPA024676 HPA:HPA025763 MIM:607789
neXtProt:NX_Q92576 PharmGKB:PA33261 HOVERGEN:HBG039623
InParanoid:Q92576 OMA:KQNMTTD PhylomeDB:Q92576 ChiTaRS:PHF3
EvolutionaryTrace:Q92576 GenomeRNAi:23469 NextBio:45797
ArrayExpress:Q92576 Bgee:Q92576 CleanEx:HS_PHF3
Genevestigator:Q92576 GermOnline:ENSG00000118482 Uniprot:Q92576
Length = 2039
Score = 122 (48.0 bits), Expect = 0.00034, P = 0.00034
Identities = 51/203 (25%), Positives = 85/203 (41%)
Query: 45 STNQMKNRVSVESKKFKAPSSRTNKKRKFEGEDQAAFPFMKKPLGQSQPPKQEQDRKTAS 104
S+ + ++ ES + +K E ++ K L P + +A
Sbjct: 868 SSEEKSEKIPKESTTVTCTGEKASKPGTHEKQEMKKKKVEKGVLNVH--PAASASKPSAD 925
Query: 105 AVEIKCSDATRTLIRERLAEAFSKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMC- 163
+ + + ++ +RL ++ KV EE K + + +KN
Sbjct: 926 QIRQSVRHSLKDILMKRLTDSNLKVP---EEKAAKVATKIEKELFSFFRDTDAKYKNKYR 982
Query: 164 PFLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE------RQSRN------KQI 211
+FN+KDPKN ++KVL GEV P+ L+ PEE+AS E R++R+ K+
Sbjct: 983 SLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQ 1042
Query: 212 REDALAKIRDHSVVGEKELECDA 234
RE I + GE E+E DA
Sbjct: 1043 REVERRPITKITHKGEIEIESDA 1065
>MGI|MGI:1196908 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 MGI:MGI:1196908
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
EMBL:AL935264 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 OMA:KGLDCSD ChiTaRS:TCEA3 EMBL:D00926
EMBL:AJ223472 EMBL:AK002319 EMBL:AK007437 EMBL:AK019024
EMBL:BC010807 IPI:IPI00137142 RefSeq:NP_035672.1 UniGene:Mm.112
PDB:1WJT PDBsum:1WJT ProteinModelPortal:P23881 SMR:P23881
STRING:P23881 PhosphoSite:P23881 PRIDE:P23881
Ensembl:ENSMUST00000102533 GeneID:21401 KEGG:mmu:21401
UCSC:uc008vhv.2 InParanoid:A2AW46 EvolutionaryTrace:P23881
NextBio:300664 Bgee:P23881 CleanEx:MM_TCEA3 Genevestigator:P23881
GermOnline:ENSMUSG00000001604 Uniprot:P23881
Length = 347
Score = 113 (44.8 bits), Expect = 0.00037, P = 0.00037
Identities = 27/56 (48%), Positives = 34/56 (60%)
Query: 168 NVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE-RQSRN----KQIREDALAK 218
N+KDP+NP R VL G + PE + EEMASDE R+ RN + IRE +AK
Sbjct: 243 NLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAK 298
>RGD|1311369 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:1311369 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 EMBL:BC091180 IPI:IPI00365276
RefSeq:NP_001015008.1 UniGene:Rn.11547 SMR:Q5BK74
Ensembl:ENSRNOT00000015776 GeneID:298559 KEGG:rno:298559
UCSC:RGD:1311369 InParanoid:Q5BK74 NextBio:643942
Genevestigator:Q5BK74 Uniprot:Q5BK74
Length = 348
Score = 113 (44.8 bits), Expect = 0.00037, P = 0.00037
Identities = 27/56 (48%), Positives = 34/56 (60%)
Query: 168 NVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE-RQSRN----KQIREDALAK 218
N+KDP+NP R VL G + PE + EEMASDE R+ RN + IRE +AK
Sbjct: 244 NLKDPRNPGLRRNVLSGTISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAK 299
>RGD|1304925 [details] [associations]
symbol:Phf3 "PHD finger protein 3" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
RGD:1304925 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:CH473965 GeneTree:ENSGT00530000063844 CTD:23469
IPI:IPI00366920 RefSeq:NP_001102261.1 UniGene:Rn.21075
Ensembl:ENSRNOT00000015638 GeneID:363210 KEGG:rno:363210
UCSC:RGD:1304925 OrthoDB:EOG4M91RC NextBio:682838 Uniprot:D3ZKI5
Length = 2020
Score = 121 (47.7 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 44/155 (28%), Positives = 71/155 (45%)
Query: 93 PPKQEQDRKTASAVEIKCSDATRTLIRERLAEAFSKVAGEVEEMEKKEQVRACDPVGVAV 152
PP + +A + + + ++ +RL ++ K+ EE K + +
Sbjct: 897 PPAAAAIKPSADQIRQSVRHSLKDILMKRLTDSNLKIP---EEKSAKVATKIEKELFSFF 953
Query: 153 SVESVLFKNMC-PFLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE------RQ 205
+KN +FN+KDPKN ++KVL GEV P+ L+ PEE+AS E R+
Sbjct: 954 RDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRE 1013
Query: 206 SRN------KQIREDALAKIRDHSVVGEKELECDA 234
+R+ K+ RE I + GE E+E DA
Sbjct: 1014 NRHTIEMIEKEQREVERRPITKITHKGEIEIESDA 1048
Score = 43 (20.2 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 25 KNQESEHHPSLLIEFIIMGLSTNQMKNRVSVESKKFKAPSS-RTNKKRKFEGEDQAAFPF 83
KN +S+H S+ M + T + V E K S+ +T K+ E E Q P
Sbjct: 462 KNMKSKHTKSVTHSKPSMTIETPRKTVAVKPEVGHSKTKSNAKTMKRNADEPEPQ---PD 518
Query: 84 MKKPLGQSQPPKQEQDRKTAS 104
++P+ + + + ++D K+ S
Sbjct: 519 CQRPV-KVRKKQVDKDLKSQS 538
>UNIPROTKB|E2R727 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 CTD:23469 OMA:KQNMTTD
EMBL:AAEX03008426 RefSeq:XP_538985.2 Ensembl:ENSCAFT00000003930
GeneID:481864 KEGG:cfa:481864 NextBio:20856589 Uniprot:E2R727
Length = 2043
Score = 120 (47.3 bits), Expect = 0.00058, P = 0.00058
Identities = 45/154 (29%), Positives = 69/154 (44%)
Query: 94 PKQEQDRKTASAVEIKCSDATRTLIRERLAEAFSKVAGEVEEMEKKEQVRACDPVGVAVS 153
P + +A + + + ++ RL E+ KV EE K + +
Sbjct: 917 PTTSTSKPSADQIRQSVRHSLKDILMRRLTESNLKVP---EEKAAKVATKIEKELFSFFR 973
Query: 154 VESVLFKNMC-PFLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE------RQS 206
+KN +FN+KDPKN ++KVL GEV P+ L+ PEE+AS E R++
Sbjct: 974 DTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRREN 1033
Query: 207 RN------KQIREDALAKIRDHSVVGEKELECDA 234
R+ K+ RE I + GE E+E DA
Sbjct: 1034 RHTIEMIEKEQREVERRPITKITHKGEIEIESDA 1067
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.363 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 235 235 0.00088 113 3 11 23 0.46 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 594 (63 KB)
Total size of DFA: 171 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.21u 0.20s 26.41t Elapsed: 00:00:02
Total cpu time: 26.22u 0.20s 26.42t Elapsed: 00:00:02
Start: Fri May 10 05:01:38 2013 End: Fri May 10 05:01:40 2013