BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037910
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 29/134 (21%)
Query: 106 VEIKCSDATRTLIRERLAEAFSK-------------VAGEVEEMEKKEQVRACDPVGVAV 152
V + C DA RT RE L A +AG++EE ++ V
Sbjct: 132 VPVTC-DAVRTKCREMLTAALQTDHDHVAIGADCECLAGQIEECIFRD-----------V 179
Query: 153 SVESVLFKNMC-PFLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQI 211
+ +KN L N+KD KNP RKVL G + P+ + EEMASDE + K +
Sbjct: 180 GNTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAM 239
Query: 212 REDALAKIRDHSVV 225
++A IR+H +
Sbjct: 240 TKEA---IREHQMA 250
>sp|Q92576|PHF3_HUMAN PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3
Length = 2039
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 12/82 (14%)
Query: 165 FLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE------RQSRN------KQIR 212
+FN+KDPKN ++KVL GEV P+ L+ PEE+AS E R++R+ K+ R
Sbjct: 984 LMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQR 1043
Query: 213 EDALAKIRDHSVVGEKELECDA 234
E I + GE E+E DA
Sbjct: 1044 EVERRPITKITHKGEIEIESDA 1065
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 166 LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE-RQSRNKQIREDALAKIRDHSV 224
+ N+KDP+NP R VL G + PE + EEMASDE R+ RN +E IR+H +
Sbjct: 241 ISNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELRELRNAMTQE----AIREHQM 296
Query: 225 V 225
Sbjct: 297 A 297
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 106 VEIKCSDATRTLIRERLAEAF----SKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKN 161
V I C DA R RE L A VA V Q+ C + + V + +KN
Sbjct: 131 VPITC-DAVRNKCREMLTLALQTDHDHVAVGVSCEHLSSQIEEC--IFLDVGNTDMKYKN 187
Query: 162 MC-PFLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIR 220
+ N+KD KNP R VL G + P+ + EEMASDE + K + ++A IR
Sbjct: 188 RVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEA---IR 244
Query: 221 DHSV 224
+H +
Sbjct: 245 EHQM 248
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 106 VEIKCSDATRTLIRERLAEAF----SKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKN 161
V I C DA R RE L A VA V Q+ C + + V + +KN
Sbjct: 131 VPITC-DAVRNKCREMLTLALQTDHDHVAVGVNCEHLSSQIEEC--IFLDVGNTDMKYKN 187
Query: 162 MC-PFLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIR 220
+ N+KD KNP R VL G + P+ + EEMASDE + K + ++A IR
Sbjct: 188 RVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEA---IR 244
Query: 221 DHSV 224
+H +
Sbjct: 245 EHQM 248
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 166 LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSVV 225
+ N+KD KNPD R VL G + P+ + EEMASDE + K + ++A IR+H +
Sbjct: 193 ISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEA---IREHQMA 249
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 111 SDATRTLIRERLAEAF----SKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMC-PF 165
SD+ R RE LA A VA +E E Q+ + + + + +KN
Sbjct: 137 SDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIE--EAIYQEIRNTDMKYKNRVRSR 194
Query: 166 LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSVV 225
+ N+KD KNP+ + VL G + P+ EEMASDE + K + ++A IR+H +
Sbjct: 195 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEA---IREHQMA 251
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 111 SDATRTLIRERLAEAF----SKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMC-PF 165
SD+ R RE LA A VA +E E Q+ + + + + +KN
Sbjct: 137 SDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIE--EAIYQEIRNTDMKYKNRVRSR 194
Query: 166 LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSVV 225
+ N+KD KNP+ + VL G + P+ EEMASDE + K + ++A IR+H +
Sbjct: 195 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEA---IREHQMA 251
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 111 SDATRTLIRERLAEAFS-----KVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKN-MCP 164
+DA R RE LA A + GE EEM + + D + + + +KN +
Sbjct: 150 TDAVRIKCREMLATALKIGEVPEGCGEPEEMAAELE----DAIYSEFNNTDMKYKNRIRS 205
Query: 165 FLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSV 224
+ N+KDPKNP + G V + L PEEMASDE + ++ ++A+ + +V
Sbjct: 206 RVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATV 265
Query: 225 VGEKE--LEC 232
G K L+C
Sbjct: 266 QGTKTDLLKC 275
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 111 SDATRTLIRERLAEAF----SKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMC-PF 165
SD+ R RE LA A +A +E E Q+ + + + + +KN
Sbjct: 137 SDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIE--EAIYQEIRNTDMKYKNRVRSR 194
Query: 166 LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSVV 225
+ N+KD KNP+ + VL G + P+ EEMASDE + K + ++A IR+H +
Sbjct: 195 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEA---IREHQMA 251
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 111 SDATRTLIRERLAEAF----SKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMC-PF 165
SD+ R RE LA A +A +E E Q+ + + + + +KN
Sbjct: 137 SDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIE--EAIYQEIRNTDMKYKNRVRSR 194
Query: 166 LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSVV 225
+ N+KD KNP+ + VL G + P+ EEMASDE + K + ++A IR+H +
Sbjct: 195 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEA---IREHQMA 251
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 166 LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE-RQSRNKQIREDALAKIRDHSV 224
+ N+KDP+NP R VL G + + EEMASDE R+ RN +E IR+H +
Sbjct: 243 ISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQE----AIREHQM 298
Query: 225 V 225
Sbjct: 299 A 299
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 166 LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE-RQSRNKQIREDALAKIRDHSV 224
+ N+KDP+NP R VL G + + EEMASDE R+ RN +E IR+H +
Sbjct: 242 ISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQE----AIREHQM 297
Query: 225 V 225
Sbjct: 298 A 298
>sp|Q6C0K9|BYE1_YARLI Transcription factor BYE1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=BYE1 PE=3 SV=1
Length = 822
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 167 FNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAKIRDHSVV 225
FN++D KN +V+ G+V P+TLV EEM + E Q +++R +A IRD +V
Sbjct: 269 FNLRDSKNETLRIRVMTGQVTPQTLVAMSSEEMMNPELQKLAEEVRAEA---IRDTVLV 324
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 124 EAFSKVAGEVEEMEKKEQVRACDPVGVAVSVESVLFKNMCPFLFNVKDPKNPDFWRKVLL 183
E+ S + + +E++ + RA G S M N+KD NP VL
Sbjct: 151 ESSSLIIAKAKEIDAQVLARAAGKTG------SEYRNRMRSLYMNLKDKNNPKLRASVLR 204
Query: 184 GEVKPETLVTALPEEMASDERQSRNKQIREDAL 216
E+ P+ L T E+AS++R+ + ++ ++ L
Sbjct: 205 NEITPQRLSTMTSAELASEDRRKEDAKLEQENL 237
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 166 LFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE-RQSRNKQIREDAL 216
+FN++D KN VL G V+ E T EEMAS E R+ R+K +E L
Sbjct: 202 IFNLRDKKNLALRENVLTGVVRAEKFATMTSEEMASAEIREMRDKFTKEAIL 253
>sp|Q9Y7V2|BYE1_SCHPO Transcription factor bye1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=bye1 PE=3 SV=3
Length = 721
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 21/123 (17%)
Query: 112 DATRTLIRERLAEAFSKVAGEVEEMEKKEQVRAC---DPVGVAVSVESVLF--------K 160
D + +R+ +A+A+ V ++ E K E V+ + +A+ +E ++F
Sbjct: 211 DEIQNPVRKSVAKAWVSVFEKIIEKAKLEGVQGLEDLNSTSLALQLEHIMFMVLSYTTDH 270
Query: 161 NMCP----------FLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQ 210
++ P FN+ D KNP F +VL E+ LV EEMA+ + ++ ++
Sbjct: 271 SLTPNNKYREKFRALRFNLVDDKNPAFRARVLKNEISFNDLVNLSSEEMANPDLKNLAEE 330
Query: 211 IRE 213
IR+
Sbjct: 331 IRQ 333
>sp|Q6ZMY3|SPOC1_HUMAN SPOC domain-containing protein 1 OS=Homo sapiens GN=SPOCD1 PE=2
SV=1
Length = 1216
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 165 FLFNVKDPKNPDFWRKVLLGEVKPETLVTA-----LPEEMA--SDERQSRNKQIRE 213
LFN++DP+N D + KV+ G+V P LV P+E+A D+ + R I E
Sbjct: 666 LLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQLAPQELARWRDQEEKRGLNIIE 721
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 165 FLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE 203
+FN+KDPKN + +VL E+ LV PEE+ S E
Sbjct: 725 IMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKE 763
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 165 FLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDE 203
+FN+KDPKN + +VL E+ LV PEE+ S E
Sbjct: 728 IMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKE 766
>sp|P51123|TAF1_DROME Transcription initiation factor TFIID subunit 1 OS=Drosophila
melanogaster GN=Taf1 PE=1 SV=3
Length = 2129
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 110 CSDATRTLIRERLAEAFSKVAGEV-----EEMEKKEQVRACDPVGVAVSVESVL------ 158
S T + R+ + + +V G++ + K R DPV V S+ ++
Sbjct: 1429 SSGFTLKVPRDAMGKKKRRVGGDLHCDYLQRHNKTANRRRTDPVVVLSSILEIIHNELRS 1488
Query: 159 FKNMCPFLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIREDALAK 218
++ PFLF V K PD++R V KP L T E R + + ED L +
Sbjct: 1489 MPDVSPFLFPVSAKKVPDYYRVV----TKPMDLQTM--REYIRQRRYTSREMFLED-LKQ 1541
Query: 219 IRDHSVV 225
I D+S++
Sbjct: 1542 IVDNSLI 1548
>sp|Q9JHC9|ELF2_MOUSE ETS-related transcription factor Elf-2 OS=Mus musculus GN=Elf2 PE=1
SV=1
Length = 593
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 83 FMKKPLGQSQPPKQEQDRKTASAVEIKCSDATRTLIRERLAEAFSKVA 130
+K P G+S+ KQE D KT VE K +D +T+ + A S +A
Sbjct: 531 LLKGPEGKSEAKKQEHDVKTLQLVEEKGADGNKTVTHVVVVSAPSAIA 578
>sp|A1L1R6|ZN423_DANRE Zinc finger protein 423 OS=Danio rerio GN=znf423 PE=2 SV=1
Length = 1365
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 87 PLGQSQPPKQEQDRKTASAVEIKCSDATRTLIR---ERLAEAFSKVAGEVEEMEKKEQVR 143
P G +Q K+ TA+A + +D L++ + A + GE EE++ E +
Sbjct: 899 PNGVTQSSKRSTAGSTAAAEQ---ADLQNMLLKGGSQETANSHEASGGE-EELDASEPMY 954
Query: 144 ACDPVGVAVSVESVL 158
ACD G A ++ES+L
Sbjct: 955 ACDICGAAYTMESLL 969
>sp|Q2RZ60|TIG_SALRD Trigger factor OS=Salinibacter ruber (strain DSM 13855 / M31)
GN=tig PE=3 SV=1
Length = 462
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 24/142 (16%)
Query: 93 PPKQEQDRKTASAVEIKCSDATRTLIRERLAEAFSKVAGEVEEMEKKEQVRACDPVGVAV 152
PP E+ + + E+ +A R IRERL EA+++ A E+ + E +++ PV V
Sbjct: 259 PPLDEEFVRRVTEGELDDLEAFRNDIRERLQEAWNERAREMAQGEVIDKMLELHPVPVP- 317
Query: 153 SVESVLFKNMCPFLFNVKDPKNPDFWRKVLLGEVKPETLVTALPEEMASDERQSRNKQIR 212
ESV+ + F+ V++ + GE LPE+ + + RN++
Sbjct: 318 --ESVIEGYLDSFVKQVEEEND---------GE---------LPEDFDEEHFRQRNRRDA 357
Query: 213 EDA--LAKIRDHSVVGEKELEC 232
ED IRD +V E++LE
Sbjct: 358 EDQGRWMLIRDQ-IVEEQDLEV 378
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,221,168
Number of Sequences: 539616
Number of extensions: 3133126
Number of successful extensions: 8464
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 8429
Number of HSP's gapped (non-prelim): 66
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)