BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037911
(609 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 26/134 (19%)
Query: 226 QVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSY 285
++Y+E R G+ + + +N+L +V C E E +P L
Sbjct: 47 RLYDEARRNGVQLSQYHYNVLLYV-C---------SLAEAATESSPNPGL---------- 86
Query: 286 CKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDI 345
+ F +++ M V+P+ T+T + A + +M G+ P +
Sbjct: 87 ------SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140
Query: 346 VSYNTLIFAYCKEG 359
SY +F +C++G
Sbjct: 141 RSYGPALFGFCRKG 154
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/69 (20%), Positives = 32/69 (46%)
Query: 227 VYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYC 286
++++M + PN TF + D + +++++ G P L +Y + +C
Sbjct: 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC 151
Query: 287 KKGRLNDAF 295
+KG + A+
Sbjct: 152 RKGDADKAY 160
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 392 KEGRLLSALNLVVELQRFGVSISRDIYDYL-----IVALCQDNRPFAATS----LLERIG 442
K+G +L AL L E +R GV +S+ Y+ L + ++ P S + +++
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97
Query: 443 QDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSG 502
D VP+ + D A + +M I+P L +Y + FC G +
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157
Query: 503 EA 504
+A
Sbjct: 158 KA 159
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 276 VTYNTLISSYCKKGRLNDAFYLYR--IMYRRNVL----PDLVTYTTLMNGLCK-EGKVRE 328
T N L Y K+G+ +A L + + R VL PD+ + + LC+ +GK E
Sbjct: 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEE 145
Query: 329 AHQLFHRMVH---RGLSPD----IVSYNTLIFAYCKEGKMQESKSLLYEMM 372
+ R + L PD + N L Y K+GK Q++++L E++
Sbjct: 146 VEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 276 VTYNTLISSYCKKGRLNDAFYLYR--IMYRRNVL----PDLVTYTTLMNGLCK-EGKVRE 328
T N L Y K+G+ +A L + + R VL PD+ + LC+ +GK E
Sbjct: 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEE 145
Query: 329 AHQLFHRMVH---RGLSPD----IVSYNTLIFAYCKEGKMQESKSLLYEMM 372
+ R + L PD + N L Y K+GK Q++++L E++
Sbjct: 146 VEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|1US7|B Chain B, Complex Of Hsp90 And P50
Length = 265
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 441 IGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGI-- 498
+G G P +E+Y L E L KC V D +L+D + + P+ + Y C G+
Sbjct: 174 LGPGGLDP-VEVYESLPEELQKCFDVKDVQMLQDAI--SKMDPTDAKYHMQRCIDSGLWV 230
Query: 499 -------GRSGEAVSLMDEMLES 514
+ GE D +LE+
Sbjct: 231 PNSKASEAKEGEEAGPGDPLLEA 253
>pdb|2WSW|A Chain A, Crystal Structure Of Carnitine Transporter From Proteus
Mirabilis
Length = 509
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGL-- 185
N+ L+ ILA A ++ E ++ + PH++ + +ISC N V GL
Sbjct: 199 NFYLVALILAMGTSLGLATPLVTECIQYLFGIPHTLQLDAIIISCWILLNAICVAFGLQK 258
Query: 186 ---IRESFKTFRKTLDVGFQPSIVSCNFLLN 213
I +T+ L +G+ + +F++N
Sbjct: 259 GVKIASDVRTYLSFLMLGWVFIVGGASFIVN 289
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
Length = 302
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 480 NIKPSLSTYRALICCFCGIGRSGEAVSLMDEM--LESGMLPDSQICRVL 526
N+K S +T ++ C GIGR+G + + LE G L D+ + V+
Sbjct: 212 NVKNSPTTVPVVVHCSAGIGRTGTLIGAYAALTHLERGTLTDTTVYDVV 260
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 276 VTYNTLISSYCKKGRLNDAFYLYR--IMYRRNVL----PDLVTYTTLMNGLCK-EGKVRE 328
T N L Y K+G+ +A L + + R VL PD+ + LC+ +GK E
Sbjct: 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171
Query: 329 AHQLFHRMV---HRGLSPD----IVSYNTLIFAYCKEGKMQESKSLLYEMM 372
+ R + L PD + N L Y K+GK +++++L E++
Sbjct: 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222
>pdb|1PAQ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Eukaryotic
Initiation Factor 2b Epsilon
Length = 189
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 256 VDKVNGFLEKIEEEGFD-PDLVTYNTLISSY 285
+D N EKI E+ FD PDL+ ++ L+S Y
Sbjct: 110 IDLXNIIXEKIVEQSFDKPDLILFSALVSLY 140
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 481 IKPSLSTYRALICCFCGIGRSGEAVSLMDEML--ESGMLPDSQICRVL 526
IK ++T L+ C GIGR+G + +L E G+L DS + ++
Sbjct: 216 IKNCVTTSPILVHCSAGIGRTGTLIGAYAALLHIERGILTDSTVYSIV 263
>pdb|1Z7M|A Chain A, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|B Chain B, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|C Chain C, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|D Chain D, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7N|A Chain A, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|B Chain B, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|C Chain C, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|D Chain D, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
Length = 344
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 254 GDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTY 313
G ++K+N L + E +T N + S +GRL F L + V+P Y
Sbjct: 15 GRMEKINYLLPEESAE------MTLNQVKSLRQIEGRLRKLFSLKNY---QEVMPPSFEY 65
Query: 314 TTLMNGLCKEGKVREAHQLFHRMVHRGLS 342
T L L GK ++F + H G S
Sbjct: 66 TQLYTALESNGKTFNQEKMFQFIKHEGQS 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,577,744
Number of Sequences: 62578
Number of extensions: 730422
Number of successful extensions: 2042
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2033
Number of HSP's gapped (non-prelim): 24
length of query: 609
length of database: 14,973,337
effective HSP length: 105
effective length of query: 504
effective length of database: 8,402,647
effective search space: 4234934088
effective search space used: 4234934088
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)