Query 037911
Match_columns 609
No_of_seqs 771 out of 3261
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 05:39:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.6E-69 5.5E-74 573.1 66.0 497 93-603 374-895 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.4E-68 7.4E-73 564.5 63.9 484 107-605 354-862 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.1E-64 4.5E-69 534.4 57.2 469 92-587 90-560 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.1E-64 2.5E-69 549.3 54.7 474 105-605 136-640 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 8.5E-63 1.8E-67 534.7 55.6 496 90-606 153-673 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3.5E-61 7.7E-66 509.8 52.4 459 123-606 84-544 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-30 3.5E-35 289.7 64.6 513 71-606 344-887 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-30 2.7E-35 290.5 62.9 459 99-582 440-898 (899)
9 PRK11447 cellulose synthase su 100.0 2.9E-22 6.3E-27 223.5 61.4 462 99-584 121-700 (1157)
10 PRK11447 cellulose synthase su 100.0 3.4E-22 7.3E-27 223.0 61.7 506 67-588 123-745 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.7E-22 3.7E-27 190.8 40.7 435 102-566 60-501 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 4.1E-22 8.9E-27 188.3 38.3 433 129-590 51-489 (966)
13 PRK11788 tetratricopeptide rep 99.9 3E-21 6.4E-26 192.4 35.4 305 249-591 44-354 (389)
14 PRK09782 bacteriophage N4 rece 99.9 1.8E-18 3.9E-23 184.5 57.7 491 70-590 58-710 (987)
15 TIGR00990 3a0801s09 mitochondr 99.9 6.7E-19 1.4E-23 184.7 53.0 430 128-584 129-571 (615)
16 PRK09782 bacteriophage N4 rece 99.9 9.8E-18 2.1E-22 178.9 58.0 474 93-604 47-691 (987)
17 PRK11788 tetratricopeptide rep 99.9 2.2E-20 4.9E-25 186.1 36.0 300 180-486 45-354 (389)
18 KOG2002 TPR-containing nuclear 99.9 2E-18 4.3E-23 172.3 45.7 512 70-598 213-759 (1018)
19 TIGR00990 3a0801s09 mitochondr 99.9 4E-18 8.7E-23 178.8 51.1 425 97-549 134-571 (615)
20 PRK15174 Vi polysaccharide exp 99.9 1.1E-17 2.5E-22 174.6 53.2 321 103-442 55-379 (656)
21 PRK15174 Vi polysaccharide exp 99.9 4.3E-18 9.4E-23 177.8 47.6 363 100-480 15-382 (656)
22 KOG2002 TPR-containing nuclear 99.9 5.1E-18 1.1E-22 169.4 44.8 514 74-605 148-731 (1018)
23 PRK10049 pgaA outer membrane p 99.9 4.8E-18 1E-22 181.4 48.0 422 159-600 11-470 (765)
24 PRK10049 pgaA outer membrane p 99.9 7.5E-18 1.6E-22 179.9 48.9 406 133-561 22-466 (765)
25 PRK14574 hmsH outer membrane p 99.9 8.2E-17 1.8E-21 168.4 54.8 460 89-592 33-519 (822)
26 PRK14574 hmsH outer membrane p 99.9 8.2E-16 1.8E-20 161.0 55.0 445 72-559 50-521 (822)
27 KOG4422 Uncharacterized conser 99.8 9E-16 1.9E-20 139.6 41.4 403 179-587 124-593 (625)
28 KOG4422 Uncharacterized conser 99.8 9.3E-15 2E-19 133.1 40.7 408 127-550 117-591 (625)
29 KOG2003 TPR repeat-containing 99.8 2E-15 4.2E-20 138.4 31.9 462 105-597 216-701 (840)
30 KOG2076 RNA polymerase III tra 99.8 3E-13 6.6E-18 134.9 48.5 470 100-584 149-695 (895)
31 KOG1915 Cell cycle control pro 99.8 9.6E-13 2.1E-17 121.7 47.6 459 101-583 84-584 (677)
32 KOG2076 RNA polymerase III tra 99.8 8.2E-13 1.8E-17 131.9 47.9 509 74-598 157-781 (895)
33 KOG0495 HAT repeat protein [RN 99.7 5.4E-12 1.2E-16 121.4 50.3 388 180-584 489-880 (913)
34 KOG0495 HAT repeat protein [RN 99.7 1.3E-11 2.8E-16 118.8 50.5 439 140-604 390-865 (913)
35 KOG2003 TPR repeat-containing 99.7 5.4E-13 1.2E-17 122.6 33.6 411 104-534 251-708 (840)
36 KOG1155 Anaphase-promoting com 99.7 1.6E-11 3.5E-16 113.6 39.8 387 200-605 159-555 (559)
37 TIGR00540 hemY_coli hemY prote 99.6 1.2E-12 2.5E-17 130.0 34.4 259 318-583 126-398 (409)
38 PRK10747 putative protoheme IX 99.6 3E-12 6.6E-17 126.3 35.7 252 321-583 129-389 (398)
39 KOG1915 Cell cycle control pro 99.6 1.3E-09 2.8E-14 101.5 49.3 439 125-584 72-536 (677)
40 KOG1155 Anaphase-promoting com 99.6 1.8E-11 4E-16 113.3 37.2 308 122-441 160-492 (559)
41 PRK10747 putative protoheme IX 99.6 3.8E-12 8.3E-17 125.6 34.6 251 251-512 129-388 (398)
42 TIGR00540 hemY_coli hemY prote 99.6 5E-12 1.1E-16 125.5 34.7 288 217-511 96-396 (409)
43 KOG0547 Translocase of outer m 99.6 6.2E-12 1.4E-16 117.0 32.3 219 323-547 339-564 (606)
44 PF13429 TPR_15: Tetratricopep 99.6 4.5E-15 9.8E-20 139.9 11.9 260 316-583 14-276 (280)
45 PF13429 TPR_15: Tetratricopep 99.6 6.2E-15 1.4E-19 138.9 12.4 261 131-406 13-274 (280)
46 KOG0547 Translocase of outer m 99.6 2E-11 4.4E-16 113.7 33.5 220 356-583 337-565 (606)
47 COG2956 Predicted N-acetylgluc 99.6 2.3E-11 5E-16 107.5 32.1 302 90-407 35-345 (389)
48 KOG1173 Anaphase-promoting com 99.6 8.8E-11 1.9E-15 111.7 36.8 289 309-605 243-537 (611)
49 COG2956 Predicted N-acetylgluc 99.6 2.9E-11 6.3E-16 106.8 30.5 286 219-514 49-347 (389)
50 COG3071 HemY Uncharacterized e 99.6 6.3E-11 1.4E-15 108.1 33.5 292 288-589 97-395 (400)
51 KOG1156 N-terminal acetyltrans 99.6 2.5E-10 5.5E-15 110.3 39.2 462 74-581 25-508 (700)
52 COG3071 HemY Uncharacterized e 99.5 1.2E-10 2.5E-15 106.4 33.2 287 182-513 96-389 (400)
53 KOG1126 DNA-binding cell divis 99.5 5.5E-12 1.2E-16 122.2 26.1 282 141-443 334-619 (638)
54 KOG1126 DNA-binding cell divis 99.5 8.3E-12 1.8E-16 121.0 26.0 197 310-513 421-619 (638)
55 KOG3785 Uncharacterized conser 99.5 6.8E-10 1.5E-14 99.4 35.5 178 104-304 36-214 (557)
56 KOG4318 Bicoid mRNA stability 99.5 8.5E-11 1.8E-15 117.2 31.9 432 119-584 18-557 (1088)
57 KOG1156 N-terminal acetyltrans 99.5 6.3E-09 1.4E-13 100.9 42.8 426 136-586 17-470 (700)
58 KOG2047 mRNA splicing factor [ 99.5 2.4E-08 5.1E-13 96.8 44.4 452 126-599 102-631 (835)
59 KOG2047 mRNA splicing factor [ 99.4 1E-07 2.2E-12 92.6 45.7 472 101-597 113-662 (835)
60 KOG1129 TPR repeat-containing 99.4 8E-11 1.7E-15 104.1 22.2 226 179-410 232-459 (478)
61 PRK12370 invasion protein regu 99.4 1.7E-10 3.6E-15 119.2 27.7 258 140-410 275-536 (553)
62 PRK12370 invasion protein regu 99.4 6.5E-10 1.4E-14 114.8 32.0 219 217-445 316-536 (553)
63 KOG4318 Bicoid mRNA stability 99.4 9.7E-11 2.1E-15 116.8 24.0 273 192-500 12-286 (1088)
64 PF12569 NARP1: NMDA receptor- 99.4 2.4E-08 5.2E-13 99.6 40.6 45 535-580 472-516 (517)
65 KOG1173 Anaphase-promoting com 99.4 1.2E-08 2.7E-13 97.4 36.0 446 101-565 60-532 (611)
66 TIGR02521 type_IV_pilW type IV 99.4 4.8E-10 1E-14 103.1 26.7 198 126-336 31-229 (234)
67 KOG1840 Kinesin light chain [C 99.4 4.7E-10 1E-14 110.2 26.3 261 311-600 200-501 (508)
68 KOG2376 Signal recognition par 99.4 6.8E-08 1.5E-12 92.9 39.7 28 242-269 112-139 (652)
69 TIGR02521 type_IV_pilW type IV 99.4 8.2E-10 1.8E-14 101.5 26.9 199 163-372 31-230 (234)
70 KOG3785 Uncharacterized conser 99.4 8.5E-09 1.8E-13 92.6 30.8 426 134-593 30-497 (557)
71 KOG1174 Anaphase-promoting com 99.3 4.6E-07 9.9E-12 83.5 41.9 309 272-592 191-506 (564)
72 PF13041 PPR_2: PPR repeat fam 99.3 3.9E-12 8.4E-17 83.6 6.2 50 553-602 1-50 (50)
73 KOG1129 TPR repeat-containing 99.3 6.8E-10 1.5E-14 98.4 21.7 234 349-590 227-462 (478)
74 PF12569 NARP1: NMDA receptor- 99.3 1.3E-08 2.8E-13 101.5 32.9 129 452-583 196-333 (517)
75 KOG1840 Kinesin light chain [C 99.3 8.5E-09 1.8E-13 101.5 29.1 249 159-477 195-477 (508)
76 KOG4162 Predicted calmodulin-b 99.3 9.4E-08 2E-12 94.9 36.0 406 161-584 321-783 (799)
77 PF13041 PPR_2: PPR repeat fam 99.3 1.3E-11 2.8E-16 81.1 6.3 47 309-355 2-48 (50)
78 KOG2376 Signal recognition par 99.3 9.1E-07 2E-11 85.4 41.1 445 102-581 24-517 (652)
79 PRK11189 lipoprotein NlpI; Pro 99.2 2.9E-08 6.2E-13 93.8 27.6 196 126-339 64-265 (296)
80 cd05804 StaR_like StaR_like; a 99.2 3.4E-07 7.4E-12 90.1 36.2 273 125-408 5-292 (355)
81 KOG4162 Predicted calmodulin-b 99.2 2.6E-07 5.6E-12 91.9 34.2 409 122-550 319-784 (799)
82 COG3063 PilF Tfp pilus assembl 99.2 3.8E-08 8.2E-13 83.6 24.5 199 179-383 44-243 (250)
83 PRK11189 lipoprotein NlpI; Pro 99.2 5.3E-08 1.1E-12 92.0 28.7 221 139-375 39-266 (296)
84 KOG1174 Anaphase-promoting com 99.1 9.3E-06 2E-10 75.1 42.6 305 236-549 190-500 (564)
85 cd05804 StaR_like StaR_like; a 99.1 8.4E-07 1.8E-11 87.3 33.9 304 93-408 9-335 (355)
86 KOG0548 Molecular co-chaperone 99.1 2.1E-06 4.6E-11 82.2 34.2 406 101-549 13-455 (539)
87 KOG4340 Uncharacterized conser 99.1 6E-07 1.3E-11 79.1 28.2 323 133-476 17-372 (459)
88 COG3063 PilF Tfp pilus assembl 99.1 2.5E-07 5.4E-12 78.7 24.5 199 128-339 37-236 (250)
89 KOG0548 Molecular co-chaperone 99.1 3.2E-06 6.9E-11 81.0 33.9 64 102-171 48-112 (539)
90 KOG0985 Vesicle coat protein c 99.0 1.6E-05 3.4E-10 81.7 38.4 384 125-575 983-1374(1666)
91 KOG3617 WD40 and TPR repeat-co 99.0 2.1E-05 4.5E-10 79.1 37.6 392 104-581 742-1171(1416)
92 KOG3616 Selective LIM binding 99.0 4.4E-06 9.6E-11 82.6 32.6 168 352-544 739-906 (1636)
93 KOG1127 TPR repeat-containing 99.0 4.6E-06 1E-10 85.4 32.9 457 92-582 494-994 (1238)
94 PRK04841 transcriptional regul 99.0 1E-05 2.2E-10 90.4 39.6 336 179-514 383-760 (903)
95 PRK04841 transcriptional regul 99.0 6.9E-06 1.5E-10 91.7 38.2 337 249-585 383-761 (903)
96 KOG4340 Uncharacterized conser 98.9 6.2E-06 1.3E-10 72.9 28.7 388 179-584 19-443 (459)
97 KOG3616 Selective LIM binding 98.9 6.7E-06 1.5E-10 81.4 31.2 389 130-584 593-1024(1636)
98 KOG3617 WD40 and TPR repeat-co 98.9 2.5E-05 5.5E-10 78.5 35.2 153 96-267 832-994 (1416)
99 KOG0624 dsRNA-activated protei 98.9 2.3E-05 5.1E-10 70.7 30.5 317 125-479 37-370 (504)
100 KOG1127 TPR repeat-containing 98.9 1.5E-05 3.2E-10 81.9 32.4 408 142-580 474-909 (1238)
101 PF04733 Coatomer_E: Coatomer 98.9 2.5E-07 5.5E-12 86.0 18.4 248 286-549 12-265 (290)
102 KOG0624 dsRNA-activated protei 98.8 2.7E-05 5.8E-10 70.4 29.5 197 239-443 37-251 (504)
103 KOG1914 mRNA cleavage and poly 98.8 0.00014 3E-09 70.0 37.1 149 433-583 349-500 (656)
104 KOG0985 Vesicle coat protein c 98.8 0.0003 6.5E-09 72.7 39.4 231 104-395 1034-1264(1666)
105 PLN02789 farnesyltranstransfer 98.8 1E-05 2.2E-10 76.4 27.4 204 139-357 50-267 (320)
106 KOG1914 mRNA cleavage and poly 98.8 0.00018 4E-09 69.3 42.6 435 123-572 17-527 (656)
107 PF04733 Coatomer_E: Coatomer 98.8 5.4E-07 1.2E-11 83.8 18.4 254 319-590 10-269 (290)
108 KOG1125 TPR repeat-containing 98.7 2.2E-06 4.8E-11 82.8 20.8 251 179-436 294-563 (579)
109 TIGR03302 OM_YfiO outer membra 98.7 3.2E-06 7E-11 77.5 20.7 190 123-339 30-232 (235)
110 PLN02789 farnesyltranstransfer 98.7 2.7E-05 5.8E-10 73.6 26.6 208 179-392 46-267 (320)
111 KOG1125 TPR repeat-containing 98.7 5.9E-06 1.3E-10 79.9 21.8 255 133-403 292-565 (579)
112 KOG2053 Mitochondrial inherita 98.7 0.00077 1.7E-08 69.2 45.4 451 104-584 23-536 (932)
113 KOG1128 Uncharacterized conser 98.6 4.8E-06 1E-10 82.7 19.9 234 311-566 399-634 (777)
114 PF12854 PPR_1: PPR repeat 98.6 5.9E-08 1.3E-12 57.0 4.1 29 237-265 4-32 (34)
115 PRK15179 Vi polysaccharide bio 98.6 1.9E-05 4E-10 82.4 25.2 149 121-282 81-229 (694)
116 KOG2053 Mitochondrial inherita 98.6 0.0011 2.5E-08 68.0 47.5 234 60-307 11-258 (932)
117 KOG1128 Uncharacterized conser 98.6 2.1E-05 4.7E-10 78.2 23.4 209 179-409 407-616 (777)
118 KOG1070 rRNA processing protei 98.6 4.6E-05 1E-09 81.1 27.0 205 275-483 1458-1667(1710)
119 COG5010 TadD Flp pilus assembl 98.6 1.4E-05 3.1E-10 69.8 19.5 151 179-333 75-225 (257)
120 COG5010 TadD Flp pilus assembl 98.6 9.7E-06 2.1E-10 70.8 18.3 161 130-303 70-230 (257)
121 KOG1070 rRNA processing protei 98.6 6.1E-05 1.3E-09 80.3 26.8 227 159-396 1454-1687(1710)
122 TIGR03302 OM_YfiO outer membra 98.6 1.1E-05 2.4E-10 74.0 19.7 181 98-304 41-232 (235)
123 KOG3081 Vesicle coat complex C 98.5 0.00023 4.9E-09 62.5 25.3 249 179-444 17-271 (299)
124 PRK14720 transcript cleavage f 98.5 7.1E-05 1.5E-09 79.0 26.8 170 124-339 29-198 (906)
125 PRK10370 formate-dependent nit 98.5 2.6E-05 5.6E-10 68.5 20.4 119 463-584 52-173 (198)
126 PRK15179 Vi polysaccharide bio 98.5 9E-05 2E-09 77.5 26.3 137 158-304 81-217 (694)
127 PRK14720 transcript cleavage f 98.5 0.00013 2.7E-09 77.2 27.1 239 202-496 28-268 (906)
128 PRK15359 type III secretion sy 98.5 1.1E-05 2.4E-10 66.9 15.6 104 488-595 27-130 (144)
129 PRK15359 type III secretion sy 98.4 1.9E-05 4E-10 65.6 16.3 95 129-234 27-121 (144)
130 COG4783 Putative Zn-dependent 98.4 0.00016 3.4E-09 69.2 23.5 111 217-331 318-429 (484)
131 KOG3081 Vesicle coat complex C 98.4 0.0003 6.5E-09 61.7 22.6 117 248-374 116-236 (299)
132 PRK10370 formate-dependent nit 98.4 3E-05 6.6E-10 68.1 16.2 119 183-304 52-173 (198)
133 KOG3060 Uncharacterized conser 98.3 0.00066 1.4E-08 59.2 22.8 186 324-514 26-220 (289)
134 KOG3060 Uncharacterized conser 98.3 0.0011 2.3E-08 57.9 22.7 188 358-549 25-220 (289)
135 TIGR02552 LcrH_SycD type III s 98.3 4.4E-05 9.5E-10 63.0 14.4 108 486-597 18-125 (135)
136 PF09976 TPR_21: Tetratricopep 98.2 6.7E-05 1.5E-09 62.5 15.2 127 129-265 15-143 (145)
137 COG4783 Putative Zn-dependent 98.2 0.00067 1.4E-08 65.0 22.2 149 125-304 305-454 (484)
138 TIGR02552 LcrH_SycD type III s 98.2 8.2E-05 1.8E-09 61.4 14.7 89 179-269 26-114 (135)
139 PF09976 TPR_21: Tetratricopep 98.1 0.00013 2.8E-09 60.8 14.9 126 453-581 15-144 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.6E-09 70.6 15.3 125 451-582 170-295 (395)
141 TIGR00756 PPR pentatricopeptid 98.1 7.4E-06 1.6E-10 48.9 4.6 35 556-590 1-35 (35)
142 PRK10866 outer membrane biogen 98.0 0.0026 5.6E-08 57.9 21.7 69 125-200 31-99 (243)
143 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.7E-10 47.9 4.6 33 312-344 2-34 (35)
144 PF14938 SNAP: Soluble NSF att 98.0 0.0017 3.6E-08 61.1 20.6 199 133-371 42-263 (282)
145 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00034 7.3E-09 56.1 13.8 100 128-234 4-105 (119)
146 PF13812 PPR_3: Pentatricopept 98.0 1.6E-05 3.4E-10 47.1 4.3 33 556-588 2-34 (34)
147 PF10037 MRP-S27: Mitochondria 97.9 0.00018 3.9E-09 69.7 13.0 122 237-358 63-186 (429)
148 PF13812 PPR_3: Pentatricopept 97.9 2.2E-05 4.7E-10 46.5 4.3 29 313-341 4-32 (34)
149 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00061 1.3E-08 65.9 15.9 117 247-370 176-293 (395)
150 CHL00033 ycf3 photosystem I as 97.9 0.00032 6.9E-09 60.3 12.7 84 125-216 34-117 (168)
151 KOG2041 WD40 repeat protein [G 97.9 0.04 8.6E-07 55.4 27.9 206 123-370 689-903 (1189)
152 KOG2041 WD40 repeat protein [G 97.8 0.045 9.7E-07 55.1 27.5 30 202-231 689-718 (1189)
153 PF07079 DUF1347: Protein of u 97.8 0.033 7E-07 53.3 42.7 463 97-596 13-531 (549)
154 KOG0550 Molecular chaperone (D 97.8 0.025 5.4E-07 53.3 24.3 53 136-198 59-111 (486)
155 PRK02603 photosystem I assembl 97.8 0.0013 2.9E-08 56.6 15.7 95 125-227 34-128 (172)
156 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0006 1.3E-08 54.6 12.7 104 98-209 10-114 (119)
157 PF10037 MRP-S27: Mitochondria 97.8 0.00042 9.2E-09 67.2 13.4 125 199-323 60-186 (429)
158 cd00189 TPR Tetratricopeptide 97.7 0.00055 1.2E-08 52.0 11.0 91 490-582 5-95 (100)
159 PLN03088 SGT1, suppressor of 97.7 0.00095 2.1E-08 64.8 14.8 90 133-233 9-98 (356)
160 PRK10866 outer membrane biogen 97.7 0.0091 2E-07 54.4 20.2 70 101-170 43-113 (243)
161 PF13525 YfiO: Outer membrane 97.7 0.014 2.9E-07 51.8 20.9 67 126-199 5-71 (203)
162 cd00189 TPR Tetratricopeptide 97.7 0.00061 1.3E-08 51.8 11.1 93 129-232 3-95 (100)
163 PF08579 RPM2: Mitochondrial r 97.7 0.00077 1.7E-08 50.9 10.5 77 315-391 30-115 (120)
164 PF08579 RPM2: Mitochondrial r 97.7 0.00046 1E-08 52.0 9.2 78 526-603 31-117 (120)
165 KOG0550 Molecular chaperone (D 97.7 0.011 2.4E-07 55.5 19.8 53 248-301 57-109 (486)
166 PLN03088 SGT1, suppressor of 97.7 0.00098 2.1E-08 64.8 13.9 91 457-549 9-99 (356)
167 KOG0553 TPR repeat-containing 97.7 0.00046 9.9E-09 61.9 10.4 97 134-243 89-185 (304)
168 PF01535 PPR: PPR repeat; Int 97.7 7.2E-05 1.6E-09 43.0 3.7 30 557-586 2-31 (31)
169 PF14938 SNAP: Soluble NSF att 97.6 0.0056 1.2E-07 57.5 18.3 146 247-407 101-264 (282)
170 KOG0553 TPR repeat-containing 97.6 0.0006 1.3E-08 61.2 10.8 97 497-598 93-190 (304)
171 PF01535 PPR: PPR repeat; Int 97.6 7.8E-05 1.7E-09 42.9 3.7 26 313-338 3-28 (31)
172 PF12895 Apc3: Anaphase-promot 97.6 0.00011 2.4E-09 54.5 5.2 83 103-196 2-84 (84)
173 PF05843 Suf: Suppressor of fo 97.6 0.0016 3.4E-08 60.9 14.1 129 452-584 3-136 (280)
174 PRK15363 pathogenicity island 97.6 0.0017 3.8E-08 53.0 12.3 96 127-233 36-131 (157)
175 PRK02603 photosystem I assembl 97.6 0.0038 8.3E-08 53.8 15.2 91 450-541 35-127 (172)
176 PF12895 Apc3: Anaphase-promot 97.6 0.00024 5.3E-09 52.6 6.7 82 139-230 2-83 (84)
177 PRK15363 pathogenicity island 97.5 0.003 6.4E-08 51.7 12.5 91 456-548 41-131 (157)
178 PF04840 Vps16_C: Vps16, C-ter 97.5 0.045 9.7E-07 51.9 22.3 109 452-580 179-287 (319)
179 CHL00033 ycf3 photosystem I as 97.5 0.003 6.6E-08 54.2 13.1 72 179-251 44-117 (168)
180 PRK10153 DNA-binding transcrip 97.5 0.0081 1.8E-07 61.1 18.0 141 447-593 334-489 (517)
181 KOG2796 Uncharacterized conser 97.5 0.043 9.3E-07 48.5 19.4 132 207-339 179-315 (366)
182 PF06239 ECSIT: Evolutionarily 97.5 0.0019 4E-08 55.5 11.1 86 239-324 46-152 (228)
183 PF12688 TPR_5: Tetratrico pep 97.5 0.0051 1.1E-07 48.5 12.7 103 492-600 8-116 (120)
184 PF06239 ECSIT: Evolutionarily 97.5 0.0029 6.3E-08 54.3 12.0 104 273-395 45-153 (228)
185 PF05843 Suf: Suppressor of fo 97.5 0.0031 6.8E-08 59.0 13.6 132 127-269 2-136 (280)
186 COG4700 Uncharacterized protei 97.4 0.053 1.1E-06 45.3 18.9 124 448-575 87-213 (251)
187 COG4700 Uncharacterized protei 97.4 0.017 3.6E-07 48.1 15.5 148 105-266 71-219 (251)
188 PF14559 TPR_19: Tetratricopep 97.4 0.00058 1.3E-08 48.2 6.4 64 531-597 2-65 (68)
189 COG4235 Cytochrome c biogenesi 97.4 0.0096 2.1E-07 54.0 15.3 112 483-598 154-268 (287)
190 PF12688 TPR_5: Tetratrico pep 97.4 0.01 2.2E-07 46.9 13.5 17 180-196 48-64 (120)
191 PRK10153 DNA-binding transcrip 97.4 0.012 2.6E-07 60.0 17.6 137 121-269 332-482 (517)
192 KOG1130 Predicted G-alpha GTPa 97.4 0.0033 7.1E-08 58.8 12.2 130 453-582 198-342 (639)
193 PF13525 YfiO: Outer membrane 97.4 0.019 4.2E-07 50.9 16.8 70 100-169 15-85 (203)
194 PF13414 TPR_11: TPR repeat; P 97.3 0.0015 3.2E-08 46.2 7.8 65 125-199 2-67 (69)
195 KOG2114 Vacuolar assembly/sort 97.3 0.17 3.8E-06 52.3 24.2 185 125-337 333-517 (933)
196 PF13432 TPR_16: Tetratricopep 97.3 0.0011 2.3E-08 46.3 6.3 58 526-584 3-60 (65)
197 PRK10803 tol-pal system protei 97.3 0.0078 1.7E-07 55.3 13.4 100 128-234 145-246 (263)
198 PF14559 TPR_19: Tetratricopep 97.2 0.0015 3.2E-08 46.0 7.0 52 138-199 3-54 (68)
199 KOG1130 Predicted G-alpha GTPa 97.2 0.005 1.1E-07 57.6 11.7 110 179-289 26-149 (639)
200 PRK10803 tol-pal system protei 97.2 0.0056 1.2E-07 56.2 11.5 91 102-199 155-246 (263)
201 PF13432 TPR_16: Tetratricopep 97.1 0.002 4.4E-08 44.8 6.5 57 132-198 3-59 (65)
202 PF04840 Vps16_C: Vps16, C-ter 97.1 0.29 6.3E-06 46.5 28.0 109 417-545 179-287 (319)
203 PF13281 DUF4071: Domain of un 97.1 0.17 3.7E-06 48.5 20.5 120 463-584 195-334 (374)
204 PF13414 TPR_11: TPR repeat; P 97.1 0.0028 6.1E-08 44.8 6.8 63 520-583 3-66 (69)
205 COG4105 ComL DNA uptake lipopr 97.0 0.22 4.8E-06 44.4 22.1 84 126-216 34-117 (254)
206 KOG2796 Uncharacterized conser 97.0 0.22 4.9E-06 44.2 24.1 143 417-562 179-326 (366)
207 COG4235 Cytochrome c biogenesi 97.0 0.043 9.4E-07 49.9 14.9 101 202-304 153-256 (287)
208 KOG1920 IkappaB kinase complex 96.9 0.83 1.8E-05 49.6 25.7 327 179-547 686-1053(1265)
209 PF13371 TPR_9: Tetratricopept 96.9 0.0076 1.6E-07 43.1 7.9 65 528-595 3-67 (73)
210 KOG2280 Vacuolar assembly/sort 96.8 0.76 1.7E-05 47.3 33.4 359 179-578 398-793 (829)
211 KOG1538 Uncharacterized conser 96.8 0.11 2.3E-06 52.0 17.1 257 275-549 556-846 (1081)
212 PF03704 BTAD: Bacterial trans 96.8 0.06 1.3E-06 44.8 13.5 59 208-267 65-123 (146)
213 COG1729 Uncharacterized protei 96.7 0.023 5E-07 51.0 10.8 90 103-199 154-244 (262)
214 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.66 1.4E-05 44.7 30.8 145 451-601 398-546 (660)
215 PRK15331 chaperone protein Sic 96.6 0.19 4E-06 41.7 14.9 87 495-583 47-133 (165)
216 PF13371 TPR_9: Tetratricopept 96.6 0.014 3.1E-07 41.7 7.8 56 134-199 3-58 (73)
217 PF04053 Coatomer_WDAD: Coatom 96.6 0.11 2.4E-06 51.8 16.3 169 89-301 260-428 (443)
218 PF07079 DUF1347: Protein of u 96.6 0.76 1.6E-05 44.4 38.4 83 135-217 88-179 (549)
219 PF13424 TPR_12: Tetratricopep 96.6 0.0069 1.5E-07 44.0 6.0 66 126-198 5-74 (78)
220 PF13512 TPR_18: Tetratricopep 96.6 0.11 2.5E-06 41.8 13.0 64 101-164 21-85 (142)
221 PF13424 TPR_12: Tetratricopep 96.4 0.0077 1.7E-07 43.7 5.3 61 522-582 7-73 (78)
222 COG3898 Uncharacterized membra 96.4 0.94 2E-05 42.9 32.0 314 102-444 65-392 (531)
223 KOG1585 Protein required for f 96.4 0.65 1.4E-05 40.9 19.2 211 122-368 27-250 (308)
224 PF13512 TPR_18: Tetratricopep 96.3 0.14 3.1E-06 41.3 12.3 87 125-218 9-95 (142)
225 KOG2114 Vacuolar assembly/sort 96.3 1.8 3.8E-05 45.4 26.3 146 131-303 373-518 (933)
226 KOG1538 Uncharacterized conser 96.3 0.47 1E-05 47.7 17.8 257 308-586 554-848 (1081)
227 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1.2 2.6E-05 43.1 37.4 130 416-549 398-531 (660)
228 COG3898 Uncharacterized membra 96.3 1.1 2.3E-05 42.5 32.8 294 207-515 84-393 (531)
229 PF03704 BTAD: Bacterial trans 96.2 0.06 1.3E-06 44.8 10.4 65 179-244 71-140 (146)
230 PF13281 DUF4071: Domain of un 96.2 1.3 2.8E-05 42.7 21.5 163 210-374 146-334 (374)
231 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.056 1.2E-06 52.5 10.7 99 483-587 73-177 (453)
232 COG1729 Uncharacterized protei 96.1 0.14 3.1E-06 46.0 12.4 98 129-234 145-244 (262)
233 PF10345 Cohesin_load: Cohesin 96.1 2.5 5.4E-05 44.9 40.0 192 102-302 33-252 (608)
234 PF09205 DUF1955: Domain of un 96.1 0.49 1.1E-05 37.3 13.3 31 449-479 119-149 (161)
235 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.09 2E-06 51.1 11.6 67 123-199 72-141 (453)
236 KOG1585 Protein required for f 96.0 0.99 2.1E-05 39.9 18.7 198 179-403 40-250 (308)
237 PF10300 DUF3808: Protein of u 96.0 0.44 9.5E-06 48.3 16.9 117 184-303 247-375 (468)
238 KOG2280 Vacuolar assembly/sort 96.0 2.4 5.2E-05 43.8 31.9 323 232-582 424-771 (829)
239 PF12921 ATP13: Mitochondrial 95.9 0.089 1.9E-06 42.0 9.3 51 305-355 47-98 (126)
240 PF09205 DUF1955: Domain of un 95.9 0.4 8.6E-06 37.7 12.1 139 427-587 14-152 (161)
241 KOG2610 Uncharacterized conser 95.9 0.38 8.2E-06 44.4 13.8 120 135-266 112-235 (491)
242 KOG0543 FKBP-type peptidyl-pro 95.8 0.29 6.3E-06 46.6 13.6 23 133-155 215-237 (397)
243 PRK15331 chaperone protein Sic 95.8 0.17 3.6E-06 42.0 10.4 48 104-153 51-98 (165)
244 PF08631 SPO22: Meiosis protei 95.7 1.9 4E-05 40.5 25.2 59 138-198 5-64 (278)
245 PF12921 ATP13: Mitochondrial 95.7 0.21 4.6E-06 39.9 10.6 46 447-492 49-95 (126)
246 KOG4555 TPR repeat-containing 95.7 0.41 9E-06 37.5 11.5 98 94-200 47-145 (175)
247 KOG1920 IkappaB kinase complex 95.6 4.2 9.1E-05 44.6 22.2 110 348-475 942-1051(1265)
248 smart00299 CLH Clathrin heavy 95.6 1.1 2.3E-05 36.9 15.1 43 386-429 13-55 (140)
249 PF04053 Coatomer_WDAD: Coatom 95.5 0.5 1.1E-05 47.2 14.9 129 207-368 297-425 (443)
250 PF08631 SPO22: Meiosis protei 95.5 2.2 4.8E-05 40.0 25.1 164 417-582 86-273 (278)
251 KOG3941 Intermediate in Toll s 95.5 0.13 2.9E-06 46.0 9.3 34 292-325 140-173 (406)
252 KOG1258 mRNA processing protei 95.4 3.4 7.4E-05 41.7 39.8 393 143-569 62-489 (577)
253 PF10300 DUF3808: Protein of u 95.4 3.7 8E-05 41.8 23.2 118 393-513 246-375 (468)
254 PF13428 TPR_14: Tetratricopep 95.3 0.07 1.5E-06 33.4 5.5 41 127-170 2-42 (44)
255 COG4105 ComL DNA uptake lipopr 95.3 2.1 4.5E-05 38.5 20.9 58 525-584 172-233 (254)
256 KOG4555 TPR repeat-containing 95.2 0.82 1.8E-05 35.9 11.8 93 133-235 50-145 (175)
257 COG3118 Thioredoxin domain-con 95.2 2.5 5.4E-05 38.7 17.2 142 179-324 143-286 (304)
258 PF13170 DUF4003: Protein of u 95.1 0.79 1.7E-05 43.0 13.9 130 186-317 78-224 (297)
259 COG4649 Uncharacterized protei 95.1 1.7 3.7E-05 36.2 13.9 124 180-303 68-195 (221)
260 PF04184 ST7: ST7 protein; In 95.0 3.2 6.8E-05 41.1 17.8 64 240-303 259-323 (539)
261 KOG0543 FKBP-type peptidyl-pro 95.0 0.5 1.1E-05 45.1 12.1 137 179-338 217-354 (397)
262 KOG1941 Acetylcholine receptor 95.0 1.3 2.8E-05 41.5 14.3 165 207-372 85-273 (518)
263 KOG3941 Intermediate in Toll s 94.9 0.41 9E-06 43.0 10.8 101 183-302 85-186 (406)
264 KOG2610 Uncharacterized conser 94.9 3.1 6.7E-05 38.7 16.3 154 180-336 113-273 (491)
265 PRK11906 transcriptional regul 94.8 2.2 4.7E-05 42.0 16.1 155 142-300 274-432 (458)
266 COG4649 Uncharacterized protei 94.6 2.2 4.9E-05 35.5 15.0 151 178-344 47-201 (221)
267 COG0457 NrfG FOG: TPR repeat [ 94.6 3.3 7.1E-05 37.3 29.9 221 324-582 37-263 (291)
268 smart00299 CLH Clathrin heavy 94.5 2.2 4.9E-05 35.0 15.4 34 252-286 19-52 (140)
269 PRK11906 transcriptional regul 94.5 3 6.6E-05 41.0 16.3 81 466-549 320-401 (458)
270 PF13170 DUF4003: Protein of u 94.4 4.6 9.9E-05 38.0 20.3 129 291-421 78-223 (297)
271 KOG1941 Acetylcholine receptor 94.4 4.7 0.0001 38.0 19.3 157 250-406 16-188 (518)
272 COG3118 Thioredoxin domain-con 94.3 4.2 9E-05 37.4 17.8 49 287-336 146-194 (304)
273 PF09613 HrpB1_HrpK: Bacterial 94.1 2.4 5.2E-05 35.2 12.7 70 137-218 21-90 (160)
274 PF04184 ST7: ST7 protein; In 94.0 7 0.00015 38.8 20.3 63 311-373 260-323 (539)
275 PF13428 TPR_14: Tetratricopep 93.4 0.22 4.7E-06 31.1 4.6 28 557-584 3-30 (44)
276 PF07035 Mic1: Colon cancer-as 93.3 4.3 9.4E-05 34.1 15.5 24 197-220 21-44 (167)
277 KOG1258 mRNA processing protei 93.2 11 0.00023 38.4 35.6 397 107-534 62-489 (577)
278 PF13176 TPR_7: Tetratricopept 93.0 0.21 4.6E-06 29.5 3.8 26 557-582 1-26 (36)
279 COG3629 DnrI DNA-binding trans 93.0 1.1 2.5E-05 41.1 10.2 77 522-599 155-236 (280)
280 PF10602 RPN7: 26S proteasome 92.8 1.8 3.9E-05 37.2 10.8 63 451-513 37-101 (177)
281 KOG2396 HAT (Half-A-TPR) repea 92.8 11 0.00024 37.4 37.8 427 107-583 88-558 (568)
282 COG3629 DnrI DNA-binding trans 92.8 1.3 2.8E-05 40.8 10.2 70 179-249 162-236 (280)
283 PF07035 Mic1: Colon cancer-as 92.7 5.4 0.00012 33.6 15.9 136 225-374 14-149 (167)
284 PF10345 Cohesin_load: Cohesin 92.7 16 0.00035 38.9 39.7 165 94-267 64-252 (608)
285 PF07163 Pex26: Pex26 protein; 92.4 8.5 0.00019 35.1 15.3 116 104-228 49-181 (309)
286 KOG0890 Protein kinase of the 92.4 31 0.00067 41.5 31.9 318 94-444 1387-1731(2382)
287 COG0457 NrfG FOG: TPR repeat [ 92.4 7.9 0.00017 34.6 32.1 120 288-408 36-158 (291)
288 PF13176 TPR_7: Tetratricopept 92.4 0.34 7.3E-06 28.6 4.1 28 128-155 1-28 (36)
289 KOG1550 Extracellular protein 92.2 17 0.00036 38.1 24.7 178 221-410 228-427 (552)
290 KOG2066 Vacuolar assembly/sort 92.0 18 0.00039 38.1 26.6 99 180-287 366-467 (846)
291 KOG1586 Protein required for f 91.6 9.3 0.0002 33.8 15.4 52 499-550 128-184 (288)
292 TIGR02561 HrpB1_HrpK type III 91.4 6.8 0.00015 32.0 11.8 53 138-200 22-74 (153)
293 COG2976 Uncharacterized protei 91.1 9.1 0.0002 32.9 14.2 89 493-585 97-189 (207)
294 PRK15180 Vi polysaccharide bio 91.1 17 0.00037 35.8 29.4 121 181-305 300-421 (831)
295 PF07719 TPR_2: Tetratricopept 90.7 0.82 1.8E-05 26.3 4.7 29 127-155 2-30 (34)
296 PF13431 TPR_17: Tetratricopep 90.6 0.35 7.5E-06 28.1 2.8 31 194-225 3-33 (34)
297 PF10602 RPN7: 26S proteasome 90.5 5.5 0.00012 34.2 11.3 62 207-268 38-101 (177)
298 KOG0276 Vesicle coat complex C 90.4 4.8 0.0001 40.7 11.8 100 181-301 648-747 (794)
299 KOG4234 TPR repeat-containing 90.4 5 0.00011 34.5 10.3 96 133-234 102-197 (271)
300 COG2976 Uncharacterized protei 90.1 11 0.00025 32.3 13.9 54 249-304 135-188 (207)
301 COG4785 NlpI Lipoprotein NlpI, 89.9 13 0.00028 32.6 15.9 88 180-269 75-162 (297)
302 COG4785 NlpI Lipoprotein NlpI, 89.6 14 0.00029 32.4 15.1 67 159-233 95-161 (297)
303 PF11207 DUF2989: Protein of u 89.5 4.2 9.2E-05 35.2 9.5 77 426-504 118-197 (203)
304 PF07719 TPR_2: Tetratricopept 89.1 0.94 2E-05 26.0 4.0 28 557-584 3-30 (34)
305 PF00515 TPR_1: Tetratricopept 89.1 1 2.2E-05 25.9 4.1 28 557-584 3-30 (34)
306 KOG1550 Extracellular protein 88.9 33 0.00072 35.9 26.4 182 185-376 227-428 (552)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 88.8 4.1 9E-05 30.2 7.6 63 500-563 22-84 (103)
308 KOG4648 Uncharacterized conser 88.7 1.5 3.3E-05 40.7 6.6 51 460-512 107-158 (536)
309 PF02284 COX5A: Cytochrome c o 88.5 4.1 9E-05 30.6 7.5 60 503-563 28-87 (108)
310 PF09613 HrpB1_HrpK: Bacterial 88.4 14 0.00029 30.9 12.7 95 451-549 8-106 (160)
311 KOG4570 Uncharacterized conser 88.3 2.1 4.5E-05 39.4 7.2 49 185-233 115-163 (418)
312 PF00515 TPR_1: Tetratricopept 88.3 1.6 3.4E-05 25.1 4.6 29 127-155 2-30 (34)
313 PF13174 TPR_6: Tetratricopept 88.3 0.92 2E-05 25.8 3.5 29 128-156 2-30 (33)
314 PF13431 TPR_17: Tetratricopep 88.1 0.72 1.6E-05 26.8 2.9 22 554-575 12-33 (34)
315 KOG2066 Vacuolar assembly/sort 87.7 41 0.00089 35.6 24.7 102 212-322 363-467 (846)
316 KOG0890 Protein kinase of the 87.3 78 0.0017 38.5 25.7 317 246-584 1389-1731(2382)
317 PF11207 DUF2989: Protein of u 86.9 13 0.00028 32.3 10.8 72 187-259 123-197 (203)
318 cd00923 Cyt_c_Oxidase_Va Cytoc 86.3 6.9 0.00015 29.1 7.5 66 535-601 22-87 (103)
319 PF13374 TPR_10: Tetratricopep 86.3 1.9 4.2E-05 26.1 4.4 30 126-155 2-31 (42)
320 PF02259 FAT: FAT domain; Int 86.2 34 0.00075 33.3 24.7 65 379-443 145-212 (352)
321 KOG0276 Vesicle coat complex C 86.1 15 0.00032 37.4 12.0 100 286-406 648-747 (794)
322 PF04097 Nic96: Nup93/Nic96; 86.0 52 0.0011 35.0 25.2 89 317-410 265-357 (613)
323 PF02284 COX5A: Cytochrome c o 85.9 5.9 0.00013 29.8 7.1 65 536-601 26-90 (108)
324 PRK09687 putative lyase; Provi 85.9 31 0.00067 32.4 29.0 202 379-601 67-278 (280)
325 KOG4570 Uncharacterized conser 85.8 16 0.00034 34.0 11.2 50 359-408 114-163 (418)
326 PF13374 TPR_10: Tetratricopep 85.1 1.8 3.9E-05 26.2 3.8 28 556-583 3-30 (42)
327 TIGR03504 FimV_Cterm FimV C-te 84.8 1.7 3.7E-05 27.0 3.4 23 526-548 5-27 (44)
328 PRK09687 putative lyase; Provi 84.5 36 0.00077 31.9 27.7 136 414-565 141-277 (280)
329 PF07575 Nucleopor_Nup85: Nup8 84.4 59 0.0013 34.3 18.1 18 179-196 157-174 (566)
330 PF13929 mRNA_stabil: mRNA sta 83.6 37 0.00081 31.4 13.4 167 107-285 113-288 (292)
331 PF13181 TPR_8: Tetratricopept 83.3 3.5 7.6E-05 23.5 4.4 29 127-155 2-30 (34)
332 PF10579 Rapsyn_N: Rapsyn N-te 83.2 2.8 6.1E-05 29.8 4.3 50 138-194 18-67 (80)
333 COG3947 Response regulator con 83.1 39 0.00084 31.2 15.7 59 313-372 282-340 (361)
334 PF02259 FAT: FAT domain; Int 83.0 48 0.001 32.3 23.4 65 449-513 145-212 (352)
335 KOG2063 Vacuolar assembly/sort 83.0 79 0.0017 34.7 20.1 37 355-391 601-637 (877)
336 PF13174 TPR_6: Tetratricopept 82.9 1.8 4E-05 24.5 3.0 24 561-584 6-29 (33)
337 KOG4234 TPR repeat-containing 82.7 14 0.0003 31.9 8.9 88 459-549 104-197 (271)
338 TIGR02561 HrpB1_HrpK type III 82.4 26 0.00056 28.8 10.8 53 461-515 21-74 (153)
339 PF13181 TPR_8: Tetratricopept 81.7 3.6 7.7E-05 23.5 4.0 28 557-584 3-30 (34)
340 PF06552 TOM20_plant: Plant sp 81.5 19 0.00041 30.6 9.3 77 185-270 50-137 (186)
341 PF00637 Clathrin: Region in C 81.4 0.97 2.1E-05 37.3 1.9 129 456-606 13-141 (143)
342 PF07721 TPR_4: Tetratricopept 80.6 2.6 5.5E-05 22.6 2.8 23 128-150 3-25 (26)
343 PF06552 TOM20_plant: Plant sp 80.4 20 0.00042 30.5 9.0 108 186-304 7-136 (186)
344 COG1747 Uncharacterized N-term 79.0 76 0.0016 32.0 25.9 163 379-549 65-234 (711)
345 COG4455 ImpE Protein of avirul 78.9 16 0.00035 32.0 8.2 74 209-283 5-80 (273)
346 PF07163 Pex26: Pex26 protein; 78.5 28 0.00062 31.9 9.9 87 387-473 90-181 (309)
347 KOG4648 Uncharacterized conser 78.2 7.4 0.00016 36.4 6.4 89 179-269 106-194 (536)
348 KOG2471 TPR repeat-containing 78.0 50 0.0011 33.0 12.0 107 424-532 249-381 (696)
349 COG4455 ImpE Protein of avirul 77.7 21 0.00045 31.4 8.5 52 248-300 9-60 (273)
350 KOG0991 Replication factor C, 77.6 52 0.0011 29.4 13.1 74 477-553 186-271 (333)
351 PF00637 Clathrin: Region in C 77.5 0.98 2.1E-05 37.3 0.8 128 421-570 13-140 (143)
352 KOG3364 Membrane protein invol 77.1 37 0.0008 27.4 10.6 72 517-591 29-105 (149)
353 KOG2063 Vacuolar assembly/sort 76.0 1.3E+02 0.0028 33.1 17.1 29 127-155 505-533 (877)
354 TIGR03504 FimV_Cterm FimV C-te 74.7 9 0.0002 23.8 4.3 23 351-373 5-27 (44)
355 PF13929 mRNA_stabil: mRNA sta 73.6 78 0.0017 29.4 16.6 59 272-330 199-258 (292)
356 PF11846 DUF3366: Domain of un 73.4 11 0.00024 33.0 6.3 55 102-156 120-174 (193)
357 KOG2471 TPR repeat-containing 73.3 1.1E+02 0.0023 30.8 16.9 108 459-568 249-382 (696)
358 PF14853 Fis1_TPR_C: Fis1 C-te 73.0 10 0.00022 24.8 4.4 37 561-599 7-43 (53)
359 KOG4507 Uncharacterized conser 72.3 33 0.00071 35.0 9.5 68 180-249 652-719 (886)
360 KOG4077 Cytochrome c oxidase, 72.1 31 0.00067 27.3 7.4 47 503-549 67-113 (149)
361 PF09986 DUF2225: Uncharacteri 71.2 76 0.0017 28.3 12.4 68 522-589 120-199 (214)
362 smart00028 TPR Tetratricopepti 70.1 9 0.00019 20.7 3.6 27 557-583 3-29 (34)
363 TIGR02508 type_III_yscG type I 69.8 46 0.00099 25.2 8.0 52 283-340 47-98 (115)
364 KOG0686 COP9 signalosome, subu 69.8 1.2E+02 0.0025 29.8 15.0 62 277-338 152-215 (466)
365 KOG0687 26S proteasome regulat 69.5 1E+02 0.0022 29.1 15.6 24 453-476 107-130 (393)
366 COG5187 RPN7 26S proteasome re 69.5 95 0.0021 28.7 11.9 67 450-516 115-186 (412)
367 COG0790 FOG: TPR repeat, SEL1 69.3 1E+02 0.0022 29.0 21.6 150 102-270 53-221 (292)
368 PF10579 Rapsyn_N: Rapsyn N-te 68.9 13 0.00028 26.5 4.5 46 532-577 18-65 (80)
369 KOG2297 Predicted translation 67.7 1.1E+02 0.0023 28.7 18.5 54 327-394 184-237 (412)
370 KOG1464 COP9 signalosome, subu 67.4 1E+02 0.0022 28.2 18.8 88 314-402 149-253 (440)
371 KOG4077 Cytochrome c oxidase, 67.0 38 0.00082 26.8 6.9 62 538-600 67-128 (149)
372 PLN03060 inositol phosphatase- 66.8 37 0.00079 29.7 7.7 74 52-125 65-138 (206)
373 PRK12798 chemotaxis protein; R 66.5 1.4E+02 0.003 29.5 16.4 205 89-307 111-327 (421)
374 COG1747 Uncharacterized N-term 66.1 1.6E+02 0.0034 29.9 25.6 98 272-374 63-160 (711)
375 cd00280 TRFH Telomeric Repeat 65.5 40 0.00086 28.8 7.3 65 501-568 85-156 (200)
376 KOG0403 Neoplastic transformat 65.0 1.5E+02 0.0033 29.4 19.7 91 488-585 512-612 (645)
377 COG2909 MalT ATP-dependent tra 64.6 2.2E+02 0.0048 31.1 29.6 225 321-545 426-684 (894)
378 PRK15180 Vi polysaccharide bio 64.5 1.6E+02 0.0035 29.5 28.1 125 134-270 297-421 (831)
379 PF08424 NRDE-2: NRDE-2, neces 64.2 1.4E+02 0.003 28.7 17.9 22 565-586 164-185 (321)
380 PF08311 Mad3_BUB1_I: Mad3/BUB 63.6 75 0.0016 25.4 10.2 44 538-581 81-125 (126)
381 PF06957 COPI_C: Coatomer (COP 63.4 80 0.0017 31.4 10.2 24 132-155 124-147 (422)
382 PF12862 Apc5: Anaphase-promot 62.8 26 0.00055 26.3 5.6 53 103-155 11-70 (94)
383 KOG2062 26S proteasome regulat 62.1 2.2E+02 0.0049 30.4 29.3 122 458-583 509-634 (929)
384 PF11848 DUF3368: Domain of un 61.8 31 0.00066 22.0 4.9 34 565-598 12-45 (48)
385 KOG0376 Serine-threonine phosp 61.7 18 0.00039 35.8 5.5 103 135-250 13-115 (476)
386 PF14689 SPOB_a: Sensor_kinase 61.4 20 0.00044 24.3 4.3 24 559-582 27-50 (62)
387 COG2909 MalT ATP-dependent tra 60.9 2.6E+02 0.0056 30.7 31.2 225 216-440 426-684 (894)
388 PHA02875 ankyrin repeat protei 60.6 96 0.0021 31.1 11.0 209 180-414 9-229 (413)
389 KOG2908 26S proteasome regulat 60.4 79 0.0017 30.0 9.0 59 490-548 80-143 (380)
390 COG0790 FOG: TPR repeat, SEL1 59.0 1.6E+02 0.0035 27.7 23.0 152 180-340 51-221 (292)
391 PF14689 SPOB_a: Sensor_kinase 58.6 28 0.00061 23.6 4.6 20 282-301 30-49 (62)
392 PF14853 Fis1_TPR_C: Fis1 C-te 58.5 49 0.0011 21.6 5.5 28 128-155 3-30 (53)
393 PF12862 Apc5: Anaphase-promot 58.1 52 0.0011 24.6 6.5 55 137-198 9-69 (94)
394 PF04910 Tcf25: Transcriptiona 57.9 1.9E+02 0.0042 28.3 19.4 209 138-358 6-272 (360)
395 KOG1464 COP9 signalosome, subu 57.8 1.5E+02 0.0033 27.1 20.6 188 290-477 42-259 (440)
396 KOG2034 Vacuolar sorting prote 57.5 2.9E+02 0.0063 30.2 31.4 43 398-441 611-653 (911)
397 PF04762 IKI3: IKI3 family; I 57.1 1.8E+02 0.0038 32.9 12.8 50 289-339 792-843 (928)
398 KOG4507 Uncharacterized conser 57.0 43 0.00092 34.2 7.2 103 496-601 618-721 (886)
399 KOG2300 Uncharacterized conser 57.0 2.2E+02 0.0048 28.7 35.9 93 95-194 52-151 (629)
400 KOG1308 Hsp70-interacting prot 56.6 9.4 0.0002 35.9 2.6 87 462-551 126-213 (377)
401 PRK13342 recombination factor 56.6 2.2E+02 0.0048 28.6 19.4 37 463-499 243-279 (413)
402 COG3947 Response regulator con 55.9 1.8E+02 0.0038 27.2 17.4 55 490-545 284-338 (361)
403 PF09670 Cas_Cas02710: CRISPR- 55.8 1.2E+02 0.0026 30.0 10.3 18 426-443 142-159 (379)
404 PRK10941 hypothetical protein; 55.4 1.4E+02 0.0029 27.9 9.9 76 524-601 185-262 (269)
405 PHA02875 ankyrin repeat protei 55.1 2.3E+02 0.005 28.3 13.9 209 215-449 9-229 (413)
406 PF04190 DUF410: Protein of un 54.1 1.8E+02 0.004 26.9 17.8 26 448-473 88-113 (260)
407 PRK11619 lytic murein transgly 54.0 3.1E+02 0.0068 29.5 42.1 275 105-408 81-374 (644)
408 PF14561 TPR_20: Tetratricopep 53.9 83 0.0018 23.4 6.8 47 124-171 20-66 (90)
409 PF13762 MNE1: Mitochondrial s 53.0 1.3E+02 0.0028 24.8 10.7 50 554-603 78-128 (145)
410 PF09670 Cas_Cas02710: CRISPR- 52.9 1.7E+02 0.0036 29.0 10.8 60 132-199 137-198 (379)
411 KOG0128 RNA-binding protein SA 52.4 3.4E+02 0.0074 29.5 34.4 199 203-407 111-339 (881)
412 PF07575 Nucleopor_Nup85: Nup8 52.1 3.1E+02 0.0068 29.0 19.4 25 126-151 149-173 (566)
413 KOG2297 Predicted translation 51.7 2.1E+02 0.0046 26.9 23.2 15 417-431 323-337 (412)
414 PF11848 DUF3368: Domain of un 51.7 60 0.0013 20.6 5.0 28 218-245 15-42 (48)
415 PF04097 Nic96: Nup93/Nic96; 51.6 3.3E+02 0.0072 29.1 23.5 24 130-153 115-138 (613)
416 PF14669 Asp_Glu_race_2: Putat 51.3 1.6E+02 0.0035 25.5 15.1 177 199-404 2-205 (233)
417 PF11846 DUF3366: Domain of un 50.9 69 0.0015 27.9 7.2 32 517-548 141-172 (193)
418 PF10475 DUF2450: Protein of u 50.0 1.7E+02 0.0036 27.7 10.0 114 246-370 104-222 (291)
419 PF10366 Vps39_1: Vacuolar sor 49.3 1.2E+02 0.0027 23.4 8.2 26 383-408 42-67 (108)
420 smart00777 Mad3_BUB1_I Mad3/BU 49.3 1.4E+02 0.0029 24.0 8.7 41 539-579 82-123 (125)
421 KOG1308 Hsp70-interacting prot 49.1 11 0.00024 35.4 1.8 89 139-238 127-215 (377)
422 PF15297 CKAP2_C: Cytoskeleton 49.1 2E+02 0.0043 27.7 9.8 46 558-603 143-188 (353)
423 KOG0292 Vesicle coat complex C 49.0 4E+02 0.0087 29.3 22.8 130 180-339 653-782 (1202)
424 KOG1114 Tripeptidyl peptidase 48.8 4.2E+02 0.0091 29.5 13.7 49 521-569 1232-1281(1304)
425 PRK10564 maltose regulon perip 48.1 38 0.00083 31.6 5.0 30 278-307 260-289 (303)
426 PF10366 Vps39_1: Vacuolar sor 48.0 1.3E+02 0.0028 23.3 7.4 26 523-548 42-67 (108)
427 PF10255 Paf67: RNA polymerase 47.6 1.2E+02 0.0027 29.9 8.7 60 523-582 125-191 (404)
428 KOG4642 Chaperone-dependent E3 47.5 2.2E+02 0.0047 25.8 11.1 81 139-231 23-104 (284)
429 KOG0376 Serine-threonine phosp 47.5 45 0.00097 33.2 5.7 52 460-513 14-66 (476)
430 KOG1586 Protein required for f 47.3 2.2E+02 0.0047 25.7 21.6 21 355-375 164-184 (288)
431 PRK09857 putative transposase; 47.3 1.9E+02 0.0041 27.3 9.7 67 523-590 209-275 (292)
432 COG5159 RPN6 26S proteasome re 47.1 2.4E+02 0.0052 26.2 18.5 21 384-404 129-149 (421)
433 PF13762 MNE1: Mitochondrial s 45.9 1.7E+02 0.0037 24.1 11.1 48 309-356 78-126 (145)
434 PF00244 14-3-3: 14-3-3 protei 45.9 2.3E+02 0.0051 25.7 10.4 56 316-371 7-63 (236)
435 PRK10564 maltose regulon perip 45.9 40 0.00087 31.4 4.8 35 558-592 260-294 (303)
436 PF00244 14-3-3: 14-3-3 protei 45.2 2.4E+02 0.0052 25.6 11.3 55 179-233 10-65 (236)
437 cd00280 TRFH Telomeric Repeat 45.2 1.6E+02 0.0034 25.4 7.7 20 389-408 120-139 (200)
438 PRK11619 lytic murein transgly 44.9 4.3E+02 0.0093 28.5 41.6 359 152-544 88-463 (644)
439 TIGR03060 PS_II_psb29 photosys 44.8 2.2E+02 0.0049 25.2 10.1 51 52-102 67-117 (214)
440 KOG0686 COP9 signalosome, subu 44.7 3.2E+02 0.007 27.0 18.9 55 179-233 159-215 (466)
441 PF11817 Foie-gras_1: Foie gra 44.7 1.3E+02 0.0028 27.6 8.1 65 125-196 177-244 (247)
442 PF15297 CKAP2_C: Cytoskeleton 44.4 1.7E+02 0.0038 28.0 8.7 45 207-251 142-186 (353)
443 PF10255 Paf67: RNA polymerase 44.4 3.4E+02 0.0073 27.1 13.4 26 381-406 123-148 (404)
444 PHA02537 M terminase endonucle 43.9 2.5E+02 0.0053 25.4 10.9 29 453-481 86-114 (230)
445 KOG4567 GTPase-activating prot 43.8 2E+02 0.0043 27.1 8.7 57 470-531 263-319 (370)
446 PRK10941 hypothetical protein; 43.7 2.7E+02 0.0059 25.9 10.3 60 489-549 185-244 (269)
447 KOG0687 26S proteasome regulat 43.7 3E+02 0.0064 26.3 16.6 96 276-373 105-209 (393)
448 KOG4521 Nuclear pore complex, 43.6 5.5E+02 0.012 29.4 14.5 15 104-118 934-948 (1480)
449 COG0735 Fur Fe2+/Zn2+ uptake r 43.0 1.5E+02 0.0033 24.5 7.4 47 195-242 11-57 (145)
450 PF11817 Foie-gras_1: Foie gra 42.4 97 0.0021 28.4 7.0 58 524-581 182-244 (247)
451 PF11838 ERAP1_C: ERAP1-like C 41.6 3.2E+02 0.007 26.1 20.9 81 291-374 146-230 (324)
452 TIGR02508 type_III_yscG type I 41.5 1.6E+02 0.0034 22.5 8.8 51 459-515 48-98 (115)
453 COG5187 RPN7 26S proteasome re 41.1 3E+02 0.0066 25.7 13.9 96 344-441 114-218 (412)
454 cd08819 CARD_MDA5_2 Caspase ac 41.0 1.5E+02 0.0031 21.9 6.8 14 324-337 50-63 (88)
455 PF11663 Toxin_YhaV: Toxin wit 40.5 33 0.00072 27.5 3.0 21 324-344 109-129 (140)
456 KOG1114 Tripeptidyl peptidase 40.4 5.6E+02 0.012 28.6 14.9 51 309-359 1230-1281(1304)
457 COG0735 Fur Fe2+/Zn2+ uptake r 40.3 1.3E+02 0.0029 24.8 6.7 39 512-551 13-51 (145)
458 KOG1087 Cytosolic sorting prot 40.1 3.5E+02 0.0075 27.6 10.6 71 94-167 24-101 (470)
459 COG5108 RPO41 Mitochondrial DN 39.4 1.4E+02 0.003 31.3 7.7 75 490-567 33-115 (1117)
460 PF02847 MA3: MA3 domain; Int 39.2 1.8E+02 0.0039 22.5 7.3 20 282-301 9-28 (113)
461 PF11264 ThylakoidFormat: Thyl 39.2 2.8E+02 0.0061 24.7 9.5 51 51-101 61-111 (216)
462 PF04190 DUF410: Protein of un 38.1 3.3E+02 0.0072 25.2 19.8 102 182-298 2-113 (260)
463 KOG2422 Uncharacterized conser 37.9 4.9E+02 0.011 27.1 18.1 121 140-267 252-405 (665)
464 PRK14958 DNA polymerase III su 37.1 4.8E+02 0.01 27.1 11.6 83 467-552 181-277 (509)
465 PF11663 Toxin_YhaV: Toxin wit 36.2 25 0.00054 28.2 1.7 34 564-599 104-137 (140)
466 PRK07003 DNA polymerase III su 35.6 6.4E+02 0.014 27.8 15.6 85 143-238 181-278 (830)
467 PF02607 B12-binding_2: B12 bi 35.5 61 0.0013 23.1 3.7 31 569-599 15-45 (79)
468 KOG3807 Predicted membrane pro 35.5 4E+02 0.0087 25.4 13.7 56 490-547 280-338 (556)
469 KOG4642 Chaperone-dependent E3 35.5 3.4E+02 0.0075 24.6 10.6 44 219-264 24-68 (284)
470 COG5159 RPN6 26S proteasome re 35.4 3.8E+02 0.0081 25.0 21.7 95 419-513 129-234 (421)
471 COG2178 Predicted RNA-binding 35.3 3E+02 0.0066 24.0 10.2 108 222-338 20-149 (204)
472 PRK13184 pknD serine/threonine 35.3 7.1E+02 0.015 28.2 27.3 100 128-232 477-579 (932)
473 PF06855 DUF1250: Protein of u 34.6 69 0.0015 20.1 3.3 42 113-154 2-43 (46)
474 PF09454 Vps23_core: Vps23 cor 34.5 1.3E+02 0.0028 20.7 4.8 30 276-305 9-38 (65)
475 PF12968 DUF3856: Domain of Un 34.3 2.4E+02 0.0051 22.4 7.8 83 106-198 32-128 (144)
476 PRK14962 DNA polymerase III su 33.5 5.5E+02 0.012 26.4 15.6 43 110-154 182-224 (472)
477 COG5108 RPO41 Mitochondrial DN 33.3 3.1E+02 0.0067 29.0 9.0 91 210-303 33-131 (1117)
478 KOG4567 GTPase-activating prot 33.0 2.7E+02 0.0058 26.3 7.8 43 261-303 264-306 (370)
479 PF04090 RNA_pol_I_TF: RNA pol 33.0 2.1E+02 0.0046 25.1 7.0 57 524-581 45-102 (199)
480 KOG1839 Uncharacterized protei 32.8 6.1E+02 0.013 29.4 11.8 24 239-262 972-995 (1236)
481 PRK08691 DNA polymerase III su 32.7 5.9E+02 0.013 27.7 11.3 83 466-551 180-276 (709)
482 PF03474 DMA: DMRTA motif; In 32.7 71 0.0015 19.3 2.8 29 85-113 10-38 (39)
483 PRK14958 DNA polymerase III su 32.3 6E+02 0.013 26.5 13.5 17 182-198 210-226 (509)
484 KOG2908 26S proteasome regulat 32.1 4.7E+02 0.01 25.2 12.8 53 181-233 86-143 (380)
485 PRK08691 DNA polymerase III su 32.0 7E+02 0.015 27.1 12.7 16 183-198 211-226 (709)
486 KOG0403 Neoplastic transformat 31.9 5.4E+02 0.012 25.8 29.2 77 523-604 512-588 (645)
487 PRK14956 DNA polymerase III su 31.8 5.8E+02 0.013 26.2 12.3 17 291-307 264-280 (484)
488 PF13934 ELYS: Nuclear pore co 31.6 3.9E+02 0.0085 24.1 14.7 106 453-569 79-186 (226)
489 PRK09857 putative transposase; 31.6 4.5E+02 0.0098 24.8 9.9 66 208-274 209-274 (292)
490 smart00386 HAT HAT (Half-A-TPR 31.5 92 0.002 16.8 3.8 28 140-170 1-28 (33)
491 PF07064 RIC1: RIC1; InterPro 31.5 4.2E+02 0.0092 24.5 15.8 27 207-233 84-110 (258)
492 PF07678 A2M_comp: A-macroglob 31.2 4.1E+02 0.0089 24.3 9.2 44 257-302 116-159 (246)
493 PF02845 CUE: CUE domain; Int 31.0 71 0.0015 19.5 2.9 32 82-113 7-38 (42)
494 PF07720 TPR_3: Tetratricopept 30.7 1.2E+02 0.0026 17.9 3.6 23 128-150 3-25 (36)
495 PRK12798 chemotaxis protein; R 30.6 5.6E+02 0.012 25.6 21.9 50 358-407 125-175 (421)
496 cd07153 Fur_like Ferric uptake 30.5 1E+02 0.0022 24.0 4.5 32 571-602 16-47 (116)
497 PF03745 DUF309: Domain of unk 29.9 1.8E+02 0.0039 19.7 5.7 15 253-267 12-26 (62)
498 PF09454 Vps23_core: Vps23 cor 29.6 1.2E+02 0.0026 20.9 4.0 45 205-250 8-52 (65)
499 PF01475 FUR: Ferric uptake re 29.3 78 0.0017 25.0 3.7 45 560-604 12-56 (120)
500 PRK11639 zinc uptake transcrip 29.1 2.5E+02 0.0055 23.9 6.9 68 537-604 7-74 (169)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.6e-69 Score=573.08 Aligned_cols=497 Identities=18% Similarity=0.233 Sum_probs=467.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhc
Q 037911 93 HEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISC 172 (609)
Q Consensus 93 ~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (609)
..++..+.+ .|+...|+++|+++.+..-..++...+..++..|.+.|..++|..+++.|.. ++..+|+.++.
T Consensus 374 ~~~y~~l~r-~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------pd~~Tyn~LL~- 445 (1060)
T PLN03218 374 IDAYNRLLR-DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------PTLSTFNMLMS- 445 (1060)
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------CCHHHHHHHHH-
Confidence 344444433 4799999999999997544567888888999999999999999999887752 67899999999
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK 252 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 252 (609)
+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 446 ------a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 446 ------VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred ------HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhh--CCccCCHhhHHHHHHHHHhcCCHHHHH
Q 037911 253 NGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYR--RNVLPDLVTYTTLMNGLCKEGKVREAH 330 (609)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~ 330 (609)
.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999986 678999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 037911 331 QLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFG 410 (609)
Q Consensus 331 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 410 (609)
++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 411 VSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRA 490 (609)
Q Consensus 411 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 490 (609)
+.|+..+|+.++.+|++.|++++|.++|++|...|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----c-------------------CCHHHHHHHHHHHH
Q 037911 491 LICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM----E-------------------KDVNKAEALLGFFA 547 (609)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~ 547 (609)
++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876542 1 12467999999999
Q ss_pred HcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 037911 548 KKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKG 603 (609)
Q Consensus 548 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 603 (609)
+.|+.||..+|+.++.+++..+....+..+++.|...+..|+..+|+++|+++++.
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 99999999999999999999999999999999999889999999999999998754
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.4e-68 Score=564.50 Aligned_cols=484 Identities=18% Similarity=0.244 Sum_probs=454.9
Q ss_pred hHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCH
Q 037911 107 VSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLI 186 (609)
Q Consensus 107 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 186 (609)
..++...++... ..++...|..++..|++.|++++|+++|++|.+. +..+++..++..++. .|.+.|.+
T Consensus 354 ~~~~~~~~~~~~---~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~-gvv~~~~v~~~~li~-------~~~~~g~~ 422 (1060)
T PLN03218 354 ENSLAAYNGGVS---GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKR-GLLDMDKIYHAKFFK-------ACKKQRAV 422 (1060)
T ss_pred hhhHHHhccccC---CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhC-CCCCchHHHHHHHHH-------HHHHCCCH
Confidence 345555555443 3557888999999999999999999999999876 334566677778888 89999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 187 RESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKI 266 (609)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 266 (609)
++|+.+|+.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 423 ~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM 498 (1060)
T PLN03218 423 KEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498 (1060)
T ss_pred HHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 999999999874 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCC
Q 037911 267 EEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH--RGLSPD 344 (609)
Q Consensus 267 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~g~~p~ 344 (609)
.+.|+.||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||
T Consensus 499 ~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 679999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 345 IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVA 424 (609)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 424 (609)
..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHH
Q 037911 425 LCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEA 504 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 504 (609)
|++.|+.++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----c------------
Q 037911 505 VSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAE----D------------ 568 (609)
Q Consensus 505 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------------ 568 (609)
.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..||..+|+.++..|.+ .
T Consensus 739 lelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~ 818 (1060)
T PLN03218 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDS 818 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999876432 1
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccc
Q 037911 569 -------GDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGME 605 (609)
Q Consensus 569 -------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 605 (609)
+..++|..+|++|++.|+.||..||+.+|.++++.+.
T Consensus 819 g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~ 862 (1060)
T PLN03218 819 GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHD 862 (1060)
T ss_pred cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccccc
Confidence 2246799999999999999999999999988877664
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-64 Score=534.43 Aligned_cols=469 Identities=16% Similarity=0.228 Sum_probs=444.2
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhh
Q 037911 92 AHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLIS 171 (609)
Q Consensus 92 ~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (609)
...++..+ ...++++.|+++|+|+....++.|+..+|+.++.++++.++++.|.+++..+.+. +..++..+++.++.
T Consensus 90 ~~~~i~~l-~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~--g~~~~~~~~n~Li~ 166 (697)
T PLN03081 90 LCSQIEKL-VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS--GFEPDQYMMNRVLL 166 (697)
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCcchHHHHHHHH
Confidence 34445544 3457999999999999976678899999999999999999999999999999876 56678999999999
Q ss_pred ccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 037911 172 CTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFC 251 (609)
Q Consensus 172 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 251 (609)
.|.+.|++++|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+++
T Consensus 167 -------~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 235 (697)
T PLN03081 167 -------MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235 (697)
T ss_pred -------HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence 99999999999999999974 8999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHH
Q 037911 252 KNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQ 331 (609)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 331 (609)
+.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.+
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999975 489999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 037911 332 LFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGV 411 (609)
Q Consensus 332 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 411 (609)
+|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--- 388 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--- 388 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHH
Q 037911 412 SISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVD-RNIKPSLSTYRA 490 (609)
Q Consensus 412 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~ 490 (609)
+|..+|+.+|.+|++.|+.++|.++|++|...|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 688999999999999999999999999999999999999999999999999999999999999986 699999999999
Q ss_pred HHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcC
Q 037911 491 LICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIY-DTESYNAVFNMFAEDG 569 (609)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 569 (609)
++++|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+. .| +..+|..+++.|++.|
T Consensus 468 li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCC
Confidence 999999999999999999887 68999999999999999999999999999999755 44 5679999999999999
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 037911 570 DLSKLMELQKRFLRLGFA 587 (609)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~ 587 (609)
++++|.+++++|.+.|+.
T Consensus 543 ~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 543 RQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CHHHHHHHHHHHHHcCCc
Confidence 999999999999999975
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-64 Score=549.33 Aligned_cols=474 Identities=17% Similarity=0.195 Sum_probs=241.3
Q ss_pred ChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC
Q 037911 105 DSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG 184 (609)
Q Consensus 105 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 184 (609)
+...|+++|+.+. .||..+|+.++.+|++.|++++|.++|++|... +..|+..+|..++. ++...+
T Consensus 136 ~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~--g~~Pd~~t~~~ll~-------~~~~~~ 201 (857)
T PLN03077 136 ELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA--GVRPDVYTFPCVLR-------TCGGIP 201 (857)
T ss_pred ChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhHHHHHHH-------HhCCcc
Confidence 4444444444443 234444444444444444444444444444432 33344444444444 444444
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (609)
+++.+.+++..+.+.|+.|++.+||.|+.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|.++|+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 4444444444444444444444555555555555555555555555432 444455555555555555555555555
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037911 265 KIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD 344 (609)
Q Consensus 265 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 344 (609)
+|.+.|+.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555543 234
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 345 IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVA 424 (609)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 424 (609)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.++..+++.++.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHH
Q 037911 425 LCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEA 504 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 504 (609)
|++.|++++|.++|++|.+ ++..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+
T Consensus 434 y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHh
Confidence 5555555555555555432 2344455555555555555555555555543 2444444444333333333322222
Q ss_pred HHHHHHHHHCCC------------------------------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 037911 505 VSLMDEMLESGM------------------------------LPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD 554 (609)
Q Consensus 505 ~~~~~~~~~~~~------------------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 554 (609)
.+++..+.+.|+ .||..+|+.++.+|++.|+.++|.++|++|.+.|..||
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 222222222222 23444455555555566666666666666666666666
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHhcccc
Q 037911 555 TESYNAVFNMFAEDGDLSKLMELQKRFL-RLGFAPNNLTCKYMIHSLWKGME 605 (609)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~ 605 (609)
..+|+.++.+|.+.|++++|.++|+.|. +.|+.||..+|+.+++.|+++|.
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 6666666666666666666666666665 45666666666666666666554
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.5e-63 Score=534.72 Aligned_cols=496 Identities=16% Similarity=0.215 Sum_probs=366.1
Q ss_pred CChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHH
Q 037911 90 LGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDL 169 (609)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 169 (609)
.+.+.++..+.+ .|+++.|+++|+.+.. .|..||..+|+.++++++..+++..+.+++..+.+. +..++..+++.+
T Consensus 153 ~~~n~li~~~~~-~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~n~L 228 (857)
T PLN03077 153 FSWNVLVGGYAK-AGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF--GFELDVDVVNAL 228 (857)
T ss_pred eEHHHHHHHHHh-CCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc--CCCcccchHhHH
Confidence 345566666544 4789999999999985 477787777766655555555555555555444433 233344444444
Q ss_pred hhccccchh------------------------HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 037911 170 ISCTEDCNW------------------------AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCW 225 (609)
Q Consensus 170 ~~~~~~~~~------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 225 (609)
+.++..++. +|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 441000000 56666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 037911 226 QVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRN 305 (609)
Q Consensus 226 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 305 (609)
+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.|
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 666666666666666666666666666666666666666664 3466666666666666666666666666666666
Q ss_pred ccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHH
Q 037911 306 VLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQI 385 (609)
Q Consensus 306 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 385 (609)
+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+ +|..+|+.
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~ 460 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTS 460 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666653 35666777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037911 386 IVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDS 465 (609)
Q Consensus 386 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
++.+|++.|+.++|+.+|++|.. ++.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.|+.+|++.|+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 77777777777777777777764 46777777777777777777777777777777777777788888888888888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 037911 466 VADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGF 545 (609)
Q Consensus 466 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 545 (609)
+++|.++|+.+ .||..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.
T Consensus 540 ~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 540 MNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 99999888887 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccccc
Q 037911 546 FA-KKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGMER 606 (609)
Q Consensus 546 ~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 606 (609)
|. +.|+.|+..+|+.++++|++.|++++|.+++++| .+.||..+|++|+.++...++.
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCh
Confidence 99 6788999999999999999999999999999999 4899999999999999876654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.5e-61 Score=509.76 Aligned_cols=459 Identities=17% Similarity=0.216 Sum_probs=437.5
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
..+..+|+.++..+.+.|++++|.++|+.+... .+..++..+|..++. ++.+.++++.|.+++..|.+.|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~-~~~~~~~~t~~~ll~-------a~~~~~~~~~a~~l~~~m~~~g~~ 155 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAG-CPFTLPASTYDALVE-------ACIALKSIRCVKAVYWHVESSGFE 155 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCCHHHHHHHHH-------HHHhCCCHHHHHHHHHHHHHhCCC
Confidence 456778999999999999999999999999865 345678899999999 999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLI 282 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 282 (609)
||..+||.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 9999999999999999999999999999964 899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Q 037911 283 SSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQ 362 (609)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 362 (609)
.++++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+++
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~ 307 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSE 307 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999964 59999999999999999999
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037911 363 ESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIG 442 (609)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 442 (609)
+|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHH-CCCCCCHH
Q 037911 443 QDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLE-SGMLPDSQ 521 (609)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~ 521 (609)
+ ||..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..
T Consensus 388 ~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 388 R----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred C----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 3 688999999999999999999999999999999999999999999999999999999999999986 59999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHH
Q 037911 522 ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPN-NLTCKYMIHSL 600 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 600 (609)
+|+.++++|++.|++++|.++++++ +..|+..+|++++.+|...|+++.|.++++++. ++.|+ ..+|..|+..|
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLY 538 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHH
Confidence 9999999999999999999998765 458999999999999999999999999999997 55675 56999999999
Q ss_pred hccccc
Q 037911 601 WKGMER 606 (609)
Q Consensus 601 ~~~~~~ 606 (609)
++.|..
T Consensus 539 ~~~G~~ 544 (697)
T PLN03081 539 NSSGRQ 544 (697)
T ss_pred HhCCCH
Confidence 998865
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-30 Score=289.65 Aligned_cols=513 Identities=14% Similarity=0.060 Sum_probs=340.1
Q ss_pred cCCChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHH
Q 037911 71 KGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLC 150 (609)
Q Consensus 71 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 150 (609)
+...+...++..+...+........++......|+++.|.++|+.+... .+.+...+..++..+...|++++|.+.++
T Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 3334444444444444333333333444444456666666666666542 12244555555555555666666655555
Q ss_pred HHHHhhC-------------------------------CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 151 ELVELVK-------------------------------DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 151 ~~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
.+.+..+ ..|.+..++..+.. .|...|++++|.+.|+++.+.
T Consensus 422 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 422 TAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGA-------IYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHH-------HHHhCCCHHHHHHHHHHHHhh
Confidence 5554311 12233344444444 556666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 037911 200 GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYN 279 (609)
Q Consensus 200 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 279 (609)
. +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+.
T Consensus 495 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 571 (899)
T TIGR02917 495 E-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPAL 571 (899)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHH
Confidence 3 3344455555666666666666666666665542 3345556666666666666666666666665543 23455566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037911 280 TLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEG 359 (609)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 359 (609)
.++..+.+.|++++|..+++++.+... .+...|..+...+...|++++|...|+.+.+.. +.+...+..+..++.+.|
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 666677777777777777777665432 255667777777777777777777777776652 234556667777777777
Q ss_pred ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 037911 360 KMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLE 439 (609)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 439 (609)
++++|..+++++.+.. +.+..++..++..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++
T Consensus 650 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 650 NYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777776642 2346667777777777777777777777777665 3466677777778888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC
Q 037911 440 RIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD 519 (609)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 519 (609)
.+...+ |+..++..++.++.+.|++++|.+.++.+.+... .+...+..+...|...|+.++|...|+++.+.. +.+
T Consensus 728 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~ 803 (899)
T TIGR02917 728 KALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDN 803 (899)
T ss_pred HHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCC
Confidence 876654 3446666777888888888888888888877543 466777888888888888888888888888754 557
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037911 520 SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHS 599 (609)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 599 (609)
..++..++..+...|+ .+|..+++++.+.. +-+...+..++..+...|++++|.++++++++.+.. |..++..+...
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 880 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALA 880 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH
Confidence 7788888888888888 77888888888653 334567788888999999999999999999987644 88888889999
Q ss_pred Hhccccc
Q 037911 600 LWKGMER 606 (609)
Q Consensus 600 ~~~~~~~ 606 (609)
+++.|+.
T Consensus 881 ~~~~g~~ 887 (899)
T TIGR02917 881 LLATGRK 887 (899)
T ss_pred HHHcCCH
Confidence 9988764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-30 Score=290.50 Aligned_cols=459 Identities=11% Similarity=0.038 Sum_probs=401.4
Q ss_pred HHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchh
Q 037911 99 LLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW 178 (609)
Q Consensus 99 l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (609)
.....++++.|+.+++.+... .+.++..|..++.++...|++++|.+.|+++++. .|.+...+..+..
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~------- 507 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI---EPDFFPAAANLAR------- 507 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCcHHHHHHHHH-------
Confidence 344557788888888777652 4567889999999999999999999999999875 4556667777777
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+.+.|++++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHH
Confidence 8999999999999999999865 5678899999999999999999999999998764 4567788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|..+++.+.+.. +.+...|..+..++...|++++|+..|+++.+.+.. +...+..+...+.+.|++++|..+++++.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998764 457889999999999999999999999999886543 677888999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037911 339 RGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIY 418 (609)
Q Consensus 339 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (609)
.. +.+...+..++..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|+..++.+.+.+ |+..++
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 63 4457889999999999999999999999998875 4467788889999999999999999999999875 444778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 037911 419 DYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGI 498 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 498 (609)
..+..++.+.|++++|...++++.... +.+...+..+...|.+.|++++|..+|+++.+... .+..++..+...+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 889999999999999999999997654 56788999999999999999999999999998754 6778899999999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 037911 499 GRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQ 578 (609)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (609)
|+ .+|+.+++++.+.. +-+..++..+...+...|++++|.++++++.+.+. .+..++..++.++.+.|++++|.+++
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99 88999999998753 44567788899999999999999999999998763 38889999999999999999999999
Q ss_pred HHHH
Q 037911 579 KRFL 582 (609)
Q Consensus 579 ~~m~ 582 (609)
++|+
T Consensus 895 ~~~~ 898 (899)
T TIGR02917 895 DKLL 898 (899)
T ss_pred HHHh
Confidence 9997
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2.9e-22 Score=223.51 Aligned_cols=462 Identities=14% Similarity=0.062 Sum_probs=283.8
Q ss_pred HHhcCCChhHHHHHHHHhhhcCCCCCCHH-hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccch
Q 037911 99 LLRCQSDSVSALTFFNWVKNDLEIKPTSS-NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCN 177 (609)
Q Consensus 99 l~~~~~~~~~A~~~f~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (609)
+....|+++.|++.|+.+... .+++.. ............|++++|++.|+++.+. .|.+..+...+..
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~--~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~---~P~~~~~~~~LA~------ 189 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNG--APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD---YPGNTGLRNTLAL------ 189 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccC--CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh---CCCCHHHHHHHHH------
Confidence 345567888888888877753 222221 1111122223457788888888888765 4555666666666
Q ss_pred hHHHHhCCHHHHHHHHHHHHhCCC------------------CCC-HHHH------------------------------
Q 037911 178 WAYVKVGLIRESFKTFRKTLDVGF------------------QPS-IVSC------------------------------ 208 (609)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~~~~~~~------------------~~~-~~~~------------------------------ 208 (609)
.+...|+.++|+..++++.+... .+. ...+
T Consensus 190 -ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 190 -LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred -HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 78888999999999988754320 000 0000
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHhH-----
Q 037911 209 ----NFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDP-DLVTY----- 278 (609)
Q Consensus 209 ----~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~----- 278 (609)
......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... ....+
T Consensus 269 ~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 269 AFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 011334567789999999999888753 3467888888889999999999999999988763221 11111
Q ss_pred -------HHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037911 279 -------NTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTL 351 (609)
Q Consensus 279 -------~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 351 (609)
......+.+.|++++|+..|+++.+.... +...+..+...+...|++++|++.|+++.+.. +.+...+..+
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L 425 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGL 425 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 12234677889999999999999887543 56677788888999999999999999988752 1223333333
Q ss_pred HHH------------------------------------------HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 037911 352 IFA------------------------------------------YCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQG 389 (609)
Q Consensus 352 i~~------------------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (609)
... +...|++++|...+++.++... -+...+..+...
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQD 504 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 332 3345666666666666665421 134455556666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---------HHHHHHHHHH
Q 037911 390 YGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSL---------EIYNELMESL 460 (609)
Q Consensus 390 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~ 460 (609)
|.+.|++++|...++++.+... .+...+..+...+...++.++|...++.+......+.. ..+..+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 6666666666666666655432 23333333333444455555555555443211111111 0112233445
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 037911 461 CKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAE 540 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 540 (609)
...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++++.. +.+...+..++..+...|++++|.
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 555666666665551 12344455666677777777777777777777643 335666777777777777777777
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 541 ALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
+.++.+.+.. +.+...+..+..++...|++++|.+++++++..
T Consensus 658 ~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 658 AQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 7777666441 223345566667777777777777777777654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=3.4e-22 Score=222.99 Aligned_cols=506 Identities=12% Similarity=0.066 Sum_probs=373.2
Q ss_pred hhhccCCChhhhhhhhhcCcCCCCCh-HHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHH
Q 037911 67 SSLKKGDSHLTLLQNDLKPLLPHLGA-HEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFA 145 (609)
Q Consensus 67 ~~l~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 145 (609)
...++.+.+...++..+...++.... ......+....++++.|++.|+.+... .+.++..+..+..++...|++++|
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHccCCHHHH
Confidence 33345556666677777776665432 223344445568999999999999874 344678889999999999999999
Q ss_pred HHHHHHHHHhhCCC-----------------CCcHHhHHHHhhccc---------------------------cchhHHH
Q 037911 146 MKMLCELVELVKDC-----------------PHSVDVFQDLISCTE---------------------------DCNWAYV 181 (609)
Q Consensus 146 ~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~---------------------------~~~~~~~ 181 (609)
++.++++....... +.....+...+..+. .....+.
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~ 280 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAV 280 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 99999886531100 000011111000000 0012577
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHH------------HHH
Q 037911 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT---HTF------------NIL 246 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~------------~~l 246 (609)
..|++++|+..|+++++.. +.+...+..+..++.+.|++++|+..|++..+.. |+. ..+ ...
T Consensus 281 ~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHH
Confidence 8899999999999999865 4578899999999999999999999999998753 321 111 122
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHH-----------
Q 037911 247 THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTT----------- 315 (609)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~----------- 315 (609)
...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHH
Confidence 456778999999999999999874 335677888899999999999999999999875432 2222222
Q ss_pred -------------------------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 316 -------------------------------LMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQES 364 (609)
Q Consensus 316 -------------------------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 364 (609)
+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 2334556799999999999998863 22566778889999999999999
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHHhcCChHHHH
Q 037911 365 KSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISR---------DIYDYLIVALCQDNRPFAAT 435 (609)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~ll~~~~~~~~~~~a~ 435 (609)
...++++.+.. +.+...+..+...+...++.++|+..++.+......+.. ..+......+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999998753 224555555566678899999999999876543222221 12334567788999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC
Q 037911 436 SLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (609)
.+++. .+.+...+..+...+.+.|++++|+..|++..+... .+...+..++..+...|++++|++.++.+.+..
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 98872 345667778899999999999999999999998653 467888999999999999999999999887642
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C----ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC
Q 037911 516 MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQI-Y----DTESYNAVFNMFAEDGDLSKLMELQKRFLR-LGFAP 588 (609)
Q Consensus 516 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p 588 (609)
+.+..++..+..++...|++++|.++++.+...... + +...+..+...+...|++++|++.|++.+. .|+.|
T Consensus 668 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 668 -NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred -CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 334566777889999999999999999999875321 1 123566678889999999999999999874 34443
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-22 Score=190.84 Aligned_cols=435 Identities=14% Similarity=0.150 Sum_probs=362.1
Q ss_pred cCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHH
Q 037911 102 CQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYV 181 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (609)
..||+.+|.+..+.+..+ .+-+......+-.++.+..+++.....-...++. .|.-.+.|..+.. .+-
T Consensus 60 q~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~---~~q~ae~ysn~aN-------~~k 127 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK---NPQGAEAYSNLAN-------ILK 127 (966)
T ss_pred hccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhc---cchHHHHHHHHHH-------HHH
Confidence 457999999999988753 2334555566677778888888777666566544 5677889999988 899
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHcCChHHHH
Q 037911 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFN-ILTHVFCKNGDVDKVN 260 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~ 260 (609)
..|++++|+..++.+++.. +..+..|-.+..++...|+.+.|.+.|.+..+ +.|+..... .+...+-..|++++|.
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 9999999999999999975 55788999999999999999999999999888 457665544 4555566689999999
Q ss_pred HHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 261 GFLEKIEEEGFDPD-LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 261 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
.-+.+.++. .|. .+.|..|...+-.+|+...|++.|++..+.++. -...|-.|...|...+.+++|...+.+....
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 999988876 444 567999999999999999999999999886443 3578899999999999999999999998875
Q ss_pred CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 037911 340 GLSPD-IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPD-TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDI 417 (609)
Q Consensus 340 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 417 (609)
.|+ ...+..+...|...|.++-|++.+++.++. .|+ ...|+.|..++-..|+..+|...+.+..... +--...
T Consensus 282 --rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 282 --RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred --CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 444 677888888999999999999999999976 555 4679999999999999999999999998875 335778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 037911 418 YDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSL-STYRALICCFC 496 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~ 496 (609)
.+.+...+...|.+++|..++....+.. +--....+.|...|-++|++++|+..|++.+. ++|+. .+|+.+...|.
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 8899999999999999999999986653 23456788999999999999999999999987 55775 57999999999
Q ss_pred cCCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHH
Q 037911 497 GIGRSGEAVSLMDEMLESGMLPD-SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDT-ESYNAVFNMFA 566 (609)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 566 (609)
..|+.+.|++.+.+++. +.|. ....+.|...|...|++.+|+.-++...+. .||. ..|..++.++-
T Consensus 434 e~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHH
Confidence 99999999999999996 4554 456889999999999999999999999977 6765 46666665543
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=4.1e-22 Score=188.31 Aligned_cols=433 Identities=15% Similarity=0.121 Sum_probs=354.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHH
Q 037911 129 YCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSC 208 (609)
Q Consensus 129 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 208 (609)
...+++-+.+.|+|.+|++.....-.. .|........+-. .+.+..+.+.....-....+.. +.-.++|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~---d~t~~~~llll~a-------i~~q~~r~d~s~a~~~~a~r~~-~q~ae~y 119 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE---DPTNTERLLLLSA-------IFFQGSRLDKSSAGSLLAIRKN-PQGAEAY 119 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc---CCCcccceeeehh-------hhhcccchhhhhhhhhhhhhcc-chHHHHH
Confidence 566788888999999999987655543 3333333333333 5666667776665555444432 5567799
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhH-HHHHHHHHh
Q 037911 209 NFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTY-NTLISSYCK 287 (609)
Q Consensus 209 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~ 287 (609)
..+.+.+-..|++++|+..|+.+.+.. +-....|..+..++...|+.+.|.+.|.+..+. .|+.... ..+...+-.
T Consensus 120 sn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 120 SNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHh
Confidence 999999999999999999999999853 335788999999999999999999999999876 4665543 334455566
Q ss_pred cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHH
Q 037911 288 KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD-IVSYNTLIFAYCKEGKMQESKS 366 (609)
Q Consensus 288 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 366 (609)
.|++++|..-|.+..+.... -...|+.|...+-..|++..|++.|++..+. .|+ ...|..|...|...+.+++|..
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 89999999999888876432 3578999999999999999999999999875 555 4678899999999999999999
Q ss_pred HHHHHHHCCCccC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037911 367 LLYEMMGNGIYPD-TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDG 445 (609)
Q Consensus 367 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 445 (609)
.+.+.... .|+ ...+..+...|...|.++-|+..+++..+..+ -=+..|+.+..++-..|+..+|...+.+.....
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99998865 444 56677888889999999999999999998752 247899999999999999999999999987654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC-HHHH
Q 037911 446 YVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSL-STYRALICCFCGIGRSGEAVSLMDEMLESGMLPD-SQIC 523 (609)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 523 (609)
+......+.|...|...|.+++|..+|....+. .|.. ..++.|...|.+.|++++|+..|+++++ +.|+ ...|
T Consensus 351 -p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~ 425 (966)
T KOG4626|consen 351 -PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADAL 425 (966)
T ss_pred -CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHH
Confidence 446778899999999999999999999998874 3554 5689999999999999999999999995 6776 4578
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037911 524 RVLINGYCMEKDVNKAEALLGFFAKKFQIYDT-ESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNN 590 (609)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 590 (609)
+.+...|-..|+.+.|...+.+.+.. .|.. ...+.|...|...|+..+|++-|++.++ ++||.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 99999999999999999999998865 4443 6789999999999999999999999994 57774
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=3e-21 Score=192.45 Aligned_cols=305 Identities=15% Similarity=0.154 Sum_probs=173.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCC---HhhHHHHHHHHHhcCC
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPD---LVTYTTLMNGLCKEGK 325 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~ 325 (609)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445555666666666655542 12334555555555555555555555555554321111 1234444555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 037911 326 VREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVE 405 (609)
Q Consensus 326 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 405 (609)
+++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 555555555554431 22344455555555555555555555555544321111000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037911 406 LQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSL 485 (609)
Q Consensus 406 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 485 (609)
....+..+...+...|++++|...++++.... +.+...+..+...+.+.|++++|.++++++.+.+.....
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 01123334445555566666666666554432 233455666667777777777777777777764322223
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 486 STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
.++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|.++++++.+. .|+...+..++..+
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 45667777777777777777777777754 455556677777777777777787777777765 56776777766665
Q ss_pred Hh---cCCHHHHHHHHHHHHHcCCCCChh
Q 037911 566 AE---DGDLSKLMELQKRFLRLGFAPNNL 591 (609)
Q Consensus 566 ~~---~g~~~~A~~~~~~m~~~g~~p~~~ 591 (609)
.. .|+.++++.++++|+++++.|++.
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 54 457777777777777776666654
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.8e-18 Score=184.48 Aligned_cols=491 Identities=12% Similarity=-0.009 Sum_probs=268.5
Q ss_pred ccCCChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHH
Q 037911 70 KKGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKML 149 (609)
Q Consensus 70 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 149 (609)
++..+++..++..++..|.+......+..+....|++++|+..++.+.+. .+.|...+..+..+ +++++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i----~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI----PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh----ccChhHHHHH
Confidence 34557778888889988888766666667777889999999999999863 22345544444322 9999999999
Q ss_pred HHHHHhhCCCCCcHHhHHHHhhcc-ccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHH
Q 037911 150 CELVELVKDCPHSVDVFQDLISCT-EDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFL-LNGLLKLNCIDQCWQV 227 (609)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~ 227 (609)
+++++. .|.+.+++..+.... ......|.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+++
T Consensus 132 e~l~~~---~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 132 EELLAQ---QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHh---CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 999987 445556555554300 0000014444 33333333 2222223334444443 6777777777777777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCc
Q 037911 228 YEEMGRIGICPNTHTFNILTHVFCK-NGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNV 306 (609)
Q Consensus 228 ~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 306 (609)
++++.+.+ +.+......|..+|.. .++ +++..+++. ..+.+...+..+...|.+.|+.++|.++++++.....
T Consensus 205 L~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 77777664 3334445555556665 255 555555443 1224566666666677777777777666666533211
Q ss_pred c-CCHhhH------------------------------------------------------------------------
Q 037911 307 L-PDLVTY------------------------------------------------------------------------ 313 (609)
Q Consensus 307 ~-p~~~~~------------------------------------------------------------------------ 313 (609)
. |...+|
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 0 110000
Q ss_pred ---------------------HHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHc------------
Q 037911 314 ---------------------TTLMNGLCKEGKVREAHQLFHRMVHR-G-LSPDIVSYNTLIFAYCKE------------ 358 (609)
Q Consensus 314 ---------------------~~ll~~~~~~~~~~~a~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~------------ 358 (609)
..+.-...+.|+.++|.++++..... + -.++......++..|.+.
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 00001122345555555555554431 0 111112222333333332
Q ss_pred ---------------------------------------------------CChHHHHHHHHHHHHCCCccCHHHHHHHH
Q 037911 359 ---------------------------------------------------GKMQESKSLLYEMMGNGIYPDTFTCQIIV 387 (609)
Q Consensus 359 ---------------------------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 387 (609)
++.++|...+.+.... .|+......+.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA 516 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAWQHRAVA 516 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchHHHHHHH
Confidence 3444455544444433 23333222233
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037911 388 QGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVA 467 (609)
Q Consensus 388 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (609)
..+...|++++|+..++++... +|+...+..+..++.+.|++++|...++...... +.....+..+.....+.|+++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHH
Confidence 3334566666666666665443 2233334444555566666666666666665443 222222333333333446666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 468 DALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFA 547 (609)
Q Consensus 468 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (609)
+|...+++..+.. |+...+..+..++.+.|++++|+..++++.... +.+...+..+..++...|++++|+..++...
T Consensus 594 eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666543 455666666666667777777777777766542 3344555666666666777777777776666
Q ss_pred HcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037911 548 KKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNN 590 (609)
Q Consensus 548 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 590 (609)
+.. +-+...+..+..++...|++++|...+++.++. .|+.
T Consensus 671 ~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 671 KGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 542 223456666666777777777777777776633 4444
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=6.7e-19 Score=184.68 Aligned_cols=430 Identities=13% Similarity=-0.009 Sum_probs=238.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVS 207 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 207 (609)
.+...+..+.+.|++++|+..|+++++. .| +...|..+.. +|.+.|++++|++.++++++.+ +.+..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p-~~~~~~n~a~-------~~~~l~~~~~Ai~~~~~al~l~-p~~~~a 196 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KP-DPVYYSNRAA-------CHNALGDWEKVVEDTTAALELD-PDYSKA 196 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC-chHHHHHHHH-------HHHHhCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 3455677777788888888888887765 22 3455666666 6778888888888888887754 445667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 037911 208 CNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK 287 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 287 (609)
|..+..++...|++++|+.-|......+- .+......++..+.. ..+........+.. +.+...+..+.. |..
T Consensus 197 ~~~~a~a~~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~ 269 (615)
T TIGR00990 197 LNRRANAYDGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQ 269 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHH
Confidence 77777888888888888777766544321 111111112211111 12222222222221 112222222222 211
Q ss_pred cCCHhHHHHHHHHHhhCCccCC-HhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCh
Q 037911 288 KGRLNDAFYLYRIMYRRNVLPD-LVTYTTLMNG---LCKEGKVREAHQLFHRMVHRG-LSP-DIVSYNTLIFAYCKEGKM 361 (609)
Q Consensus 288 ~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~ 361 (609)
....+....-+.+..+. .+. ...+..+... ....+++++|.+.|+...+.+ ..| +...+..+...+...|++
T Consensus 270 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 11111111111111111 011 0111111111 122356677777777776653 122 334556666666667777
Q ss_pred HHHHHHHHHHHHCCCccC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037911 362 QESKSLLYEMMGNGIYPD-TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLER 440 (609)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
++|...+++.++. .|+ ...|..+...+...|++++|+..++++.+.. +-+...+..+...+...|++++|...+++
T Consensus 348 ~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 348 LEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred HHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776654 233 4456666666777777777777777766654 23456666667777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH
Q 037911 441 IGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDS 520 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 520 (609)
..... +.+...+..+...+.+.|++++|+..|++..+.. +.+...++.+...+...|++++|++.|+++++..-..+.
T Consensus 425 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 425 SIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence 65543 3345566666667777777777777777766542 123556666667777777777777777776653211011
Q ss_pred H------HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 521 Q------ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 521 ~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
. .++..+..+...|++++|.+++++..+.. +.+...+..++..+...|++++|+++|++..+.
T Consensus 503 ~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 503 MYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 0 11112222333577777777777766542 222345666777777777777777777776644
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=9.8e-18 Score=178.92 Aligned_cols=474 Identities=11% Similarity=0.015 Sum_probs=312.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhc
Q 037911 93 HEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISC 172 (609)
Q Consensus 93 ~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (609)
..+.+.+....|+++.|+..|+.+.+. .+.+...+..++..|...|++++|+..+++.++. .|.+...+..+.
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La-- 119 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLA-- 119 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHH--
Confidence 345555666679999999999999973 2346889999999999999999999999999975 445555555443
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNG--------LLKLNCIDQCWQVYEEMGRIGICPNTHTFN 244 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 244 (609)
.+ +++++|..+++++.+.. +-+..++..+... |.+. ++|.+.++ .......|+..+..
T Consensus 120 ------~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~ 185 (987)
T PRK09782 120 ------AI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLR 185 (987)
T ss_pred ------Hh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHH
Confidence 22 99999999999999865 4455566655555 5554 55555555 33322334455555
Q ss_pred HH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh
Q 037911 245 IL-THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK-KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK 322 (609)
Q Consensus 245 ~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 322 (609)
.. ...|.+.|++++|++++.++.+.+ ..+......+..+|.. .++ +++..+++.. +.-+...+..+...+.+
T Consensus 186 L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~ 259 (987)
T PRK09782 186 TDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAY 259 (987)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHH
Confidence 55 899999999999999999999986 3355557777778887 366 8888886542 23478889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHH------------------------------HHHHH------------------
Q 037911 323 EGKVREAHQLFHRMVHRGLS-PDIVSY------------------------------NTLIF------------------ 353 (609)
Q Consensus 323 ~~~~~~a~~~~~~m~~~g~~-p~~~~~------------------------------~~li~------------------ 353 (609)
.|+.++|.++++++...-.. |+..++ -.++.
T Consensus 260 ~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (987)
T PRK09782 260 RGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATL 339 (987)
T ss_pred CCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 99999999999887643111 111111 00011
Q ss_pred ---------------------------------------------HHHHcCChHHHHHHHHHHHHC-C-Ccc--------
Q 037911 354 ---------------------------------------------AYCKEGKMQESKSLLYEMMGN-G-IYP-------- 378 (609)
Q Consensus 354 ---------------------------------------------~~~~~g~~~~A~~~~~~~~~~-~-~~~-------- 378 (609)
...+.|+.++|.++++..... + ..+
T Consensus 340 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 340 PANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred CcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 112345555555555544331 0 011
Q ss_pred --------------------------------------------------------CHHHHHHHHHHHHccCCHHHHHHH
Q 037911 379 --------------------------------------------------------DTFTCQIIVQGYGKEGRLLSALNL 402 (609)
Q Consensus 379 --------------------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~ 402 (609)
+...|..+..++.. ++.++|+..
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a 498 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYA 498 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHH
Confidence 11222223333332 445556665
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037911 403 VVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIK 482 (609)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 482 (609)
+.+..... |+......+...+...|++++|...++++... +|+...+..+...+.+.|+.++|..++++..+.+.
T Consensus 499 ~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P- 573 (987)
T PRK09782 499 WLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL- 573 (987)
T ss_pred HHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence 55555442 34333333344455777888888877776443 33444455666777778888888888888776542
Q ss_pred CCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037911 483 PSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVF 562 (609)
Q Consensus 483 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 562 (609)
.+...+..+...+...|++++|...+++.++. .|+...+..+..++.+.|++++|...++...... +.+...++.+.
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG 650 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALG 650 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 22233333334444568888888888888853 5677788888888888899999998888888763 33446778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccc
Q 037911 563 NMFAEDGDLSKLMELQKRFLRLGFAPNNL-TCKYMIHSLWKGM 604 (609)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~ 604 (609)
.++...|++++|++.+++.++. .|+.. .+..+-..+.+.|
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence 8888888999999888888854 55543 3333334444333
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.2e-20 Score=186.12 Aligned_cols=300 Identities=15% Similarity=0.106 Sum_probs=164.1
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCh
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN---THTFNILTHVFCKNGDV 256 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~ 256 (609)
+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445555555555555555543 23444555555555555555555555555554321111 13445555555566666
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCH----hhHHHHHHHHHhcCCHHHHHHH
Q 037911 257 DKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDL----VTYTTLMNGLCKEGKVREAHQL 332 (609)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~ 332 (609)
++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666655432 234455555666666666666666666665554332211 1234455555666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 037911 333 FHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVS 412 (609)
Q Consensus 333 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 412 (609)
|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|.+.|++++|...++++.+..
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-- 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 66665542 223445555556666666666666666666654222123445566666666666666666666666553
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 037911 413 ISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCK---CDSVADALLLKDEMVDRNIKPSLS 486 (609)
Q Consensus 413 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 486 (609)
|+...+..++..+.+.|++++|...++++... .|+...++.++..+.. .|+.+++..+++++.+.+++|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 34444456666666666666666666666443 3566666666655543 346666777777666655444443
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2e-18 Score=172.28 Aligned_cols=512 Identities=12% Similarity=0.070 Sum_probs=382.0
Q ss_pred ccCCChhhhhhhhhcCcCCCCChHHHHHHHHhcCC---ChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHH
Q 037911 70 KKGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQS---DSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAM 146 (609)
Q Consensus 70 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 146 (609)
.....++..+++.+...|..+++...++++..... .+..++..+..+-.. .+.++...+.|.+-+.-.|++..++
T Consensus 213 ~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHH
Confidence 34445666677777777766666667776654443 455788888777754 3457778889999999999999999
Q ss_pred HHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037911 147 KMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQ 226 (609)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 226 (609)
.+.+.++......+.-..-|-.+.+ +|...|++++|...|.+..+..-.--+..+--|...+.+.|+.+.+..
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gR-------s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGR-------SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHH-------HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHH
Confidence 9999998763333344455667777 999999999999999999875422224455668899999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHh
Q 037911 227 VYEEMGRIGICPNTHTFNILTHVFCKNG----DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMY 302 (609)
Q Consensus 227 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 302 (609)
.|+.+.+. .+.+..+..+|...|...+ ..++|..++.+..+.- +.|...|-.+...+-...- ..++..|....
T Consensus 364 ~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 364 CFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHH
Confidence 99999875 3455677778887787775 5677888888877663 4467778777777665544 44477776554
Q ss_pred ----hCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHHcCChHHHHHHHH
Q 037911 303 ----RRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR---GLSPDI------VSYNTLIFAYCKEGKMQESKSLLY 369 (609)
Q Consensus 303 ----~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~ 369 (609)
..+..+.....|.+...+...|++++|...|...... ...+|. .+-..+...+-..++.+.|.+.|.
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 3455577889999999999999999999999998765 223333 233345666667889999999999
Q ss_pred HHHHCCCccCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCC
Q 037911 370 EMMGNGIYPDTF-TCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD-GYV 447 (609)
Q Consensus 370 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~ 447 (609)
.+++. .|..+ .|..++......+...+|...++...+.+ ..++..+..+...+.....+..|.+-+..+... ...
T Consensus 521 ~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 521 SILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 99976 45543 35555444455678889999999988765 446667777777888888878888877766222 223
Q ss_pred CCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC
Q 037911 448 PSLEIYNELMESLCK------------CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 448 ~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (609)
+|..+.-.|.+.|.+ .+..++|+.+|.+++.... -|..+-+-+.-+++..|++++|..+|.+..+..
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 677777677765543 2457889999999887643 466777888888999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037911 516 MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ-IYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCK 594 (609)
Q Consensus 516 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 594 (609)
.-...+|..+.++|..+|++-.|+++|+...+... .-++.+...|.+++.+.|++.+|.+.....+.....-..+.||
T Consensus 677 -~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 677 -SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred -hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 33556788999999999999999999998887766 3456788999999999999999999999998664444455566
Q ss_pred HHHH
Q 037911 595 YMIH 598 (609)
Q Consensus 595 ~ll~ 598 (609)
..+.
T Consensus 756 ~a~v 759 (1018)
T KOG2002|consen 756 LALV 759 (1018)
T ss_pred HHHH
Confidence 5543
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=4e-18 Score=178.80 Aligned_cols=425 Identities=13% Similarity=-0.001 Sum_probs=300.4
Q ss_pred HHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccc
Q 037911 97 RVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDC 176 (609)
Q Consensus 97 ~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (609)
+......++++.|+..|+.++. ..|++..|..+..+|.+.|++++|+..++.+++. .|.....+..+..
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~----- 202 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL---DPDYSKALNRRAN----- 202 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHH-----
Confidence 4455667899999999999986 4677889999999999999999999999999976 4667788888888
Q ss_pred hhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 037911 177 NWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDV 256 (609)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (609)
+|...|++++|+..|..+...+...+. ....++..+.. ..+.....+..+.. +.+...+..+.. +......
T Consensus 203 --a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~ 273 (615)
T TIGR00990 203 --AYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRP 273 (615)
T ss_pred --HHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccC
Confidence 899999999999999877654322222 22222222222 12222233332221 222222222222 2222121
Q ss_pred HHHHHHHHHHHHcCCCCC-HHhHHHHHHH---HHhcCCHhHHHHHHHHHhhCC-ccC-CHhhHHHHHHHHHhcCCHHHHH
Q 037911 257 DKVNGFLEKIEEEGFDPD-LVTYNTLISS---YCKKGRLNDAFYLYRIMYRRN-VLP-DLVTYTTLMNGLCKEGKVREAH 330 (609)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~---~~~~g~~~~a~~~~~~~~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~ 330 (609)
+....-+....+. .+. ...+..+... ....+++++|++.|++..+.+ ..| ....|..+...+...|++++|.
T Consensus 274 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~ 351 (615)
T TIGR00990 274 KPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEAL 351 (615)
T ss_pred Ccchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 1221112211111 111 1111111111 123468999999999998764 223 4556788888888999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 037911 331 QLFHRMVHRGLSPD-IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRF 409 (609)
Q Consensus 331 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (609)
..+++..+. .|+ ...|..+...+...|++++|...|+++++.. +.+...|..+...+...|++++|+..|++..+.
T Consensus 352 ~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 352 ADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999876 444 5678888888999999999999999998763 335788889999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---
Q 037911 410 GVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLS--- 486 (609)
Q Consensus 410 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--- 486 (609)
.. .+...+..+..++.+.|++++|...+++..... +.+...++.+...+...|++++|++.|++..+.....+..
T Consensus 429 ~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~ 506 (615)
T TIGR00990 429 DP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506 (615)
T ss_pred Cc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccccc
Confidence 53 356777788889999999999999999987653 4567889999999999999999999999988754221111
Q ss_pred ---HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 487 ---TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 487 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
.++..+..+...|++++|.++++++.+.. +.+...+..++..+.+.|++++|.+.|++..+.
T Consensus 507 ~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 507 VLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 12222233444699999999999988754 334457888999999999999999999998865
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.1e-17 Score=174.61 Aligned_cols=321 Identities=12% Similarity=0.045 Sum_probs=153.5
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHH
Q 037911 103 QSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVK 182 (609)
Q Consensus 103 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 182 (609)
.|++..|+.+++.+... .+.++..+..++.++...|++++|...++++++. .|.+...+..+.. .+..
T Consensus 55 ~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~-------~l~~ 122 (656)
T PRK15174 55 KDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV---NVCQPEDVLLVAS-------VLLK 122 (656)
T ss_pred cCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh---CCCChHHHHHHHH-------HHHH
Confidence 35555555555555442 1223334444444444555555555555555543 3334444444444 5555
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGF 262 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (609)
.|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 555555555555555532 3334455555555555555555555555554322 1112222222 224455555555555
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 037911 263 LEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVRE----AHQLFHRMVH 338 (609)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~ 338 (609)
++.+.+....++...+..+...+...|++++|+..+++..+.+.. +...+..+...+...|++++ |...|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 555544322222233333344555555555555555555544322 34444455555555555553 4555555554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037911 339 RGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIY 418 (609)
Q Consensus 339 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (609)
.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|+..++++.+.+.. +...+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~ 355 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWN 355 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHH
Confidence 31 1234445555555555555555555555555432 112334444555555555555555555555544211 11222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 037911 419 DYLIVALCQDNRPFAATSLLERIG 442 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~ 442 (609)
..+..++...|++++|...+++..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 223444555555555555555553
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=4.3e-18 Score=177.76 Aligned_cols=363 Identities=14% Similarity=0.073 Sum_probs=281.3
Q ss_pred HhcCCChhHHHHHHHHhhhcCCCC-CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchh
Q 037911 100 LRCQSDSVSALTFFNWVKNDLEIK-PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW 178 (609)
Q Consensus 100 ~~~~~~~~~A~~~f~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (609)
...+.|++.---+|+...+..... .+..-...++..+.+.|++++|..+++..+.. .|........++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~---~p~~~~~l~~l~~------- 84 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT---AKNGRDLLRRWVI------- 84 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh---CCCchhHHHHHhh-------
Confidence 345667877666776665432222 24445566788888999999999999999876 5566666777766
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
+....|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 85 ~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 85 SPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred hHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHH
Confidence 7788999999999999999865 5667788888899999999999999999998752 4456778888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|...++.+...... +...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|...++++.+
T Consensus 163 A~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 163 AISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999988766322 33333333 34788999999999999988765444555556667788899999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 037911 339 RGLSPDIVSYNTLIFAYCKEGKMQE----SKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSIS 414 (609)
Q Consensus 339 ~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 414 (609)
.. +.+...+..+...+...|++++ |...+++..+.. +.+...+..+...+.+.|++++|+..+++..+... .+
T Consensus 241 ~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~ 317 (656)
T PRK15174 241 RG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DL 317 (656)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 64 3356778888899999999885 789999988763 23567888889999999999999999999888753 35
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037911 415 RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRN 480 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 480 (609)
...+..+..++.+.|++++|...++++..... .+...+..+..++...|+.++|...|++..+..
T Consensus 318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 318 PYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 66777788889999999999999988866532 223334445677888999999999999988754
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.1e-18 Score=169.40 Aligned_cols=514 Identities=12% Similarity=0.057 Sum_probs=325.8
Q ss_pred ChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhc-CCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHH
Q 037911 74 SHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKND-LEIKPTSSNYCLIVHILAWNNKFSFAMKMLCEL 152 (609)
Q Consensus 74 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 152 (609)
.+...++..++..|++..+-.--..+.-..+|+..|+.+|..+... +...+++ ...+.+.+.+.|+.+.|+..|+.+
T Consensus 148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHH
Confidence 3445566778888888776666666777788999999999997753 3344443 334567788999999999999999
Q ss_pred HHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 153 VELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
++. .|....++..|.... -.+.....+..++..+...-... +-++.+.+.|.+.+.-.|++..++.+...+.
T Consensus 226 lqL---dp~~v~alv~L~~~~----l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 226 LQL---DPTCVSALVALGEVD----LNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred Hhc---ChhhHHHHHHHHHHH----HHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 987 344555544443200 02223345666777777666543 4677778888888888888888888888876
Q ss_pred hCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC
Q 037911 233 RIGIC--PNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDL--VTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP 308 (609)
Q Consensus 233 ~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 308 (609)
..... .-...|-.+.++|-..|++++|..+|-+..+.. ++. ..+-.+...|.+.|+++.+...|+.+.+....
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~- 374 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN- 374 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-
Confidence 64311 123457778888888888888888888777653 333 34455667888888888888888888765332
Q ss_pred CHhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----HHCCCccCH
Q 037911 309 DLVTYTTLMNGLCKEG----KVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEM----MGNGIYPDT 380 (609)
Q Consensus 309 ~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~ 380 (609)
+..+...|...|...+ ..+.|..++....+.- +.|...|-.+...+-.. +.-.++..|..+ ...+-.+.+
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCH
Confidence 4455555655555553 3455555555555442 33455555544444332 222224444332 233333555
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcC----------------------
Q 037911 381 FTCQIIVQGYGKEGRLLSALNLVVELQRF---GVSISR------DIYDYLIVALCQDN---------------------- 429 (609)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~~---------------------- 429 (609)
...|.+...+...|++++|...|...... ...++. .+-..+...+-..+
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ 532 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDA 532 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHH
Confidence 56666666666666666666666555433 111111 11112222222333
Q ss_pred ------------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh
Q 037911 430 ------------RPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDR-NIKPSLSTYRALICCFC 496 (609)
Q Consensus 430 ------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~ 496 (609)
...+|...+....... ..++..+..+...+.+...+..|.+-|....+. ...+|..+.-.|...|.
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 3345555555543322 234444555555666666666666655555433 22256666555655443
Q ss_pred c------------CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 037911 497 G------------IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNM 564 (609)
Q Consensus 497 ~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 564 (609)
+ .+..++|+++|.++++.. +-|...-+.+.-+++..|++.+|..+|.+.++... -+..+|-.+.++
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHC 689 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHH
Confidence 2 245678888888888753 44677778899999999999999999999998742 356789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHhcccc
Q 037911 565 FAEDGDLSKLMELQKRFLRLGF-APNNLTCKYMIHSLWKGME 605 (609)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~ 605 (609)
|..+|+|..|+++|+...+.-. .-+......|-.++.+++.
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999886544 4456666777777777664
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=4.8e-18 Score=181.41 Aligned_cols=422 Identities=12% Similarity=-0.010 Sum_probs=318.0
Q ss_pred CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 037911 159 CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICP 238 (609)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 238 (609)
.+.+.......+. .....|+.++|++++++..... +.+...+..+...+...|++++|.++|++..+.. +.
T Consensus 11 ~~~~~~~~~d~~~-------ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~ 81 (765)
T PRK10049 11 SALSNNQIADWLQ-------IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQ 81 (765)
T ss_pred cCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 3445555555555 7789999999999999998633 5667679999999999999999999999988752 44
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHH
Q 037911 239 NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMN 318 (609)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 318 (609)
+...+..++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+. +...+..+..
T Consensus 82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~ 158 (765)
T PRK10049 82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQ 158 (765)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 56777888889999999999999999998873 33455 888889999999999999999999987654 5666677888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCh---HHHHHHHHHHHHC-CCccCHH-H
Q 037911 319 GLCKEGKVREAHQLFHRMVHRGLSPDI------VSYNTLIFAYC-----KEGKM---QESKSLLYEMMGN-GIYPDTF-T 382 (609)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~ 382 (609)
.+...+..++|++.++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 88889999999998886654 2321 11222222222 12233 7788889888854 2223221 1
Q ss_pred H----HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHH
Q 037911 383 C----QIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVP---SLEIYNE 455 (609)
Q Consensus 383 ~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 455 (609)
+ ...+..+...|++++|+..|+.+.+.+.+........+..++...|++++|...++++....... .......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 1 11133456779999999999999987633122233335778999999999999999986543211 1345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHH
Q 037911 456 LMESLCKCDSVADALLLKDEMVDRNI-----------KPS---LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQ 521 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 521 (609)
+..++...|++++|..+++.+.+... .|+ ...+..+...+...|+.++|+++++++.... +-+..
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~ 394 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQG 394 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 77788999999999999999987531 123 2345567778889999999999999998753 55677
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 037911 522 ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD-TESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 600 (609)
.+..++..+...|++++|++.+++.... .|+ ...+...+..+...|++++|.++++++++. .|+......+=..+
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 8899999999999999999999999976 454 567777788899999999999999999965 77777665554443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=7.5e-18 Score=179.91 Aligned_cols=406 Identities=11% Similarity=0.022 Sum_probs=201.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLL 212 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (609)
+.+....|+.++|++++.++... .|.....+..+.. .+...|++++|++.++++++.. +.+...+..+.
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~---~~~~a~~~~~lA~-------~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVH---MQLPARGYAAVAV-------AYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 33444444455554444444421 1223333344433 4444455555555555444432 22333444444
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHh
Q 037911 213 NGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLN 292 (609)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 292 (609)
..+...|++++|...+++..+. .+.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...|..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 4444445555555555444443 122233 4444444444455555555555544432 112233333444444444444
Q ss_pred HHHHHHHHHhhCCccCCH------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHH
Q 037911 293 DAFYLYRIMYRRNVLPDL------VTYTTLMNGLC-----KEGKV---REAHQLFHRMVHR-GLSPDIV-SY----NTLI 352 (609)
Q Consensus 293 ~a~~~~~~~~~~~~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~m~~~-g~~p~~~-~~----~~li 352 (609)
+|+..++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 45444443332 1110 00111111111 11122 4455555555532 1122211 11 0112
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhc
Q 037911 353 FAYCKEGKMQESKSLLYEMMGNGIY-PDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSI---SRDIYDYLIVALCQD 428 (609)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~ 428 (609)
.++...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 2334445666666666665554321 221 11223445566666666666666655432111 123344444455666
Q ss_pred CChHHHHHHHHHHHhCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 429 NRPFAATSLLERIGQDG-----------YVPS---LEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICC 494 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~-----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 494 (609)
|++++|...++.+.... ..|+ ...+..+...+...|++++|+++++++..... .+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 66666666666554331 1123 23455666777788888888888888876532 345677777788
Q ss_pred HhcCCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 037911 495 FCGIGRSGEAVSLMDEMLESGMLPD-SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAV 561 (609)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 561 (609)
+...|++++|++.++++.+. .|+ ...+..++..+...|++++|+.+++.+.+. .|+......+
T Consensus 403 ~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 88888888888888888864 344 556666777788888888888888888876 5555433333
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=8.2e-17 Score=168.37 Aligned_cols=460 Identities=9% Similarity=0.025 Sum_probs=228.2
Q ss_pred CCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCH--HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhH
Q 037911 89 HLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTS--SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVF 166 (609)
Q Consensus 89 ~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 166 (609)
+........++...+|++..|+..|+.+.+. .|+. ..+ -++.++...|+.++|+..+++.+. ..+.....+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~---p~n~~~~~l 105 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS---SMNISSRGL 105 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc---CCCCCHHHH
Confidence 3334444445555556666666666666542 2221 122 555555666666666666666651 122233333
Q ss_pred HHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 037911 167 QDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNIL 246 (609)
Q Consensus 167 ~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 246 (609)
..+.. .|...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..+
T Consensus 106 lalA~-------ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~l 175 (822)
T PRK14574 106 ASAAR-------AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTL 175 (822)
T ss_pred HHHHH-------HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHH
Confidence 33343 4555666666666666666544 333455555555566666666666666666553 3444444333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCH
Q 037911 247 THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKV 326 (609)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 326 (609)
+..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|+++.++-. +.++-...... +.
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~ 243 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ER 243 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HH
Confidence 333333444444666666666553 2234455555566666666666655544322 11111000000 00
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCccCH-HHH----HHHHHHHHccCCHHHHH
Q 037911 327 REAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN-GIYPDT-FTC----QIIVQGYGKEGRLLSAL 400 (609)
Q Consensus 327 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~A~ 400 (609)
+.|-+. ++.+..++..- - .+.--.+.|+.-++.+... +..|.. ..| .-.+-++...|++.+++
T Consensus 244 ~~~a~~----vr~a~~~~~~~----~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 244 DAAAEQ----VRMAVLPTRSE----T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred HHHHHH----Hhhcccccccc----h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 000000 00000000000 0 0000123344444444331 111211 111 11233455566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 401 NLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDG-----YVPSLEIYNELMESLCKCDSVADALLLKDE 475 (609)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
+.++.+...+.+....+-..+..+|...+++++|..+++.+.... ..++......|..++...+++++|..+++.
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 666666666555555566666666666666666666666663321 122333345566666666666666666666
Q ss_pred HHHCCC-------------CCCHH-HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 037911 476 MVDRNI-------------KPSLS-TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEA 541 (609)
Q Consensus 476 ~~~~~~-------------~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 541 (609)
+.+... .||-. .+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|++
T Consensus 393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 665211 11222 23334455666677777777777776532 4466666667777777777777777
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 037911 542 LLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLT 592 (609)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 592 (609)
.++..... .+-+..+....+.++...|++++|.++.+.+.+. .|+...
T Consensus 472 ~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 472 ELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIP 519 (822)
T ss_pred HHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchh
Confidence 77555543 1223345556666666667777777777666633 455443
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=8.2e-16 Score=160.97 Aligned_cols=445 Identities=10% Similarity=0.042 Sum_probs=263.1
Q ss_pred CCChhhhhhhhhcCcCCCC-ChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHH
Q 037911 72 GDSHLTLLQNDLKPLLPHL-GAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLC 150 (609)
Q Consensus 72 ~~~~~~~l~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 150 (609)
...++..++..++..|.+. ....++.++ ...|+.++|+.+++.+.. ..+........++..+...|++++|+++|+
T Consensus 50 ~~~Al~~L~qaL~~~P~~~~av~dll~l~-~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 50 TAPVLDYLQEESKAGPLQSGQVDDWLQIA-GWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred HHHHHHHHHHHHhhCccchhhHHHHHHHH-HHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3567777888888777763 222444433 344899999999999882 123344444455778999999999999999
Q ss_pred HHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037911 151 ELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEE 230 (609)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 230 (609)
++++. .|.+..++..++. .|...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 127 kaL~~---dP~n~~~l~gLa~-------~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 127 SSLKK---DPTNPDLISGMIM-------TQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHhh---CCCCHHHHHHHHH-------HHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99976 5566777777777 899999999999999999885 46666665555555556667679999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhH--HHHHHHHHhcC---------C---HhHHHH
Q 037911 231 MGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTY--NTLISSYCKKG---------R---LNDAFY 296 (609)
Q Consensus 231 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g---------~---~~~a~~ 296 (609)
+.+.. +.+...+..+..++.+.|-...|.++..+-... +.+....+ ...+.-.++.+ + .+.|+.
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 99863 446777788889999999999999887763321 11111111 00011111111 1 223333
Q ss_pred HHHHHhhC-CccCCH-h----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 037911 297 LYRIMYRR-NVLPDL-V----TYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYE 370 (609)
Q Consensus 297 ~~~~~~~~-~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (609)
-++.+... +..|.. . ...-.+-++...|++.++++.|+.+...|.+.-..+-..+.++|...+++++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 33333321 111211 1 11122334445555555555555555544332223444455555555555555555555
Q ss_pred HHHCC-----CccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037911 371 MMGNG-----IYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDG 445 (609)
Q Consensus 371 ~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 445 (609)
+.... ..++......|.-++...+++++|..+++.+.+. .|.. +..+... ...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~------~~~~~~~--------------~~~ 410 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQ------VGVYGLP--------------GKE 410 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcE------EeccCCC--------------CCC
Confidence 54321 1112222344555555555555555555555442 1100 0000000 000
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 037911 446 YVPSL-EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICR 524 (609)
Q Consensus 446 ~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 524 (609)
..||- ..+..++..+...|++.+|++.++++..... -|......+...+...|.+.+|.+.++.+... -+-+..+..
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~ 488 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILER 488 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHH
Confidence 11222 2334456667777888888888888876532 46667777778888888888888888666643 133445566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHH
Q 037911 525 VLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYN 559 (609)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 559 (609)
..+.++...|++.+|..+.+.+.+. .|+.....
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~ 521 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISR--SPEDIPSQ 521 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHH
Confidence 7777777888888888888877766 45544333
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=9e-16 Score=139.63 Aligned_cols=403 Identities=15% Similarity=0.149 Sum_probs=297.5
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hH-HHHHHHHHHhhCC-------------------C
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC--ID-QCWQVYEEMGRIG-------------------I 236 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~-~a~~~~~~m~~~~-------------------~ 236 (609)
-....|.++++.-+|+.|...|++.+...-..|+...+-.+. +- .-++-|-.|...| .
T Consensus 124 kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~ 203 (625)
T KOG4422|consen 124 KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL 203 (625)
T ss_pred HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc
Confidence 367899999999999999999988888776666654332221 11 1122222222211 2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHH
Q 037911 237 CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTL 316 (609)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 316 (609)
+-+..++.+||.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4567899999999999999999999999998887788999999999654322 227899999999999999999999
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHH----CCCcc----CHHHH
Q 037911 317 MNGLCKEGKVRE----AHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQE-SKSLLYEMMG----NGIYP----DTFTC 383 (609)
Q Consensus 317 l~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~----~~~~~----~~~~~ 383 (609)
+.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998775 56788999999999999999999999999888644 5555555443 22333 34556
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037911 384 QIIVQGYGKEGRLLSALNLVVELQRFG----VSIS---RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNEL 456 (609)
Q Consensus 384 ~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 456 (609)
...+..|....+.+-|.++..-+.... +.++ ..-|..+..+.|+....+.-...++.+...-+.|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 777888888889888888776654431 2222 234666777888888888888999999888888999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC-CH--------hH-----HHHHH-------HHHHHCC
Q 037911 457 MESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIG-RS--------GE-----AVSLM-------DEMLESG 515 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----A~~~~-------~~~~~~~ 515 (609)
+++..-.|.++-.-++|..++..|..-+...-..++..+++.. .. .. |..++ .++.+
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-- 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-- 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--
Confidence 9999999999999999999998875555555555555555543 11 11 11111 12222
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCChhcHHH---HHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037911 516 MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ-IYDTESYNA---VFNMFAEDGDLSKLMELQKRFLRLGFA 587 (609)
Q Consensus 516 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~g~~ 587 (609)
..-.....+..+-.+.+.|..++|.+++..+.+.+. .|-....++ +++.-...+....|+..++-|...+..
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 234455677777888999999999999999976665 455566674 445566778899999999999876544
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=9.3e-15 Score=133.11 Aligned_cols=408 Identities=14% Similarity=0.151 Sum_probs=290.4
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccch--------h--------------HHHHhC
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCN--------W--------------AYVKVG 184 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~--------------~~~~~g 184 (609)
++-+.++. +...|...++.-+|+.|... +.+.++.+-..+++.....+ | .-.+.|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e--~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSE--NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34444443 34467777777777777764 45556665555544211100 0 111333
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (609)
.+.+ -+|+. .+.+..+|..+|.++|+--..+.|.++|++......+.+..+||.+|.+-.-. ...+++.
T Consensus 194 ~vAd--L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~ 262 (625)
T KOG4422|consen 194 AVAD--LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVA 262 (625)
T ss_pred cHHH--HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHH
Confidence 3333 22222 35677899999999999999999999999998877789999999999864433 2278899
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHhH----HHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 037911 265 KIEEEGFDPDLVTYNTLISSYCKKGRLND----AFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVRE-AHQLFHRMVHR 339 (609)
Q Consensus 265 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~ 339 (609)
+|......||..|+|+++.+..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ |..++.++...
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 99999999999999999999999998765 56788999999999999999999999999988744 45555555432
Q ss_pred ----CCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CccCH---HHHHHHHHHHHccCCHHHHHHHHH
Q 037911 340 ----GLS----PDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNG----IYPDT---FTCQIIVQGYGKEGRLLSALNLVV 404 (609)
Q Consensus 340 ----g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 404 (609)
.+. .|...|...+..|.+..+.+-|.++..-+.... +.|+. .-|..+....|+....+.-...|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 245567778888889999998988876655321 23332 336777788899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHH
Q 037911 405 ELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCD-SV--------A-----DAL 470 (609)
Q Consensus 405 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~ 470 (609)
.|.-.-.-|...+...++++..-.++++-.-+++..++..|..-+......++..+++.. .. . -|.
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 998887788999999999999999998888888888877775544444444444455433 11 0 111
Q ss_pred HHHH-------HHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCCHHHH
Q 037911 471 LLKD-------EMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG----MLPDSQICRVLINGYCMEKDVNKA 539 (609)
Q Consensus 471 ~~~~-------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A 539 (609)
.+++ ++.... -.....+...-.+.+.|+.++|.+++..+.+.+ ..|......-+++...+.++...|
T Consensus 503 d~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1221 222223 345566666777889999999999999996543 234444555778888889999999
Q ss_pred HHHHHHHHHcC
Q 037911 540 EALLGFFAKKF 550 (609)
Q Consensus 540 ~~~~~~~~~~~ 550 (609)
..+++.+...+
T Consensus 581 ~~~lQ~a~~~n 591 (625)
T KOG4422|consen 581 IEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHcC
Confidence 99999997543
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=2e-15 Score=138.38 Aligned_cols=462 Identities=12% Similarity=0.085 Sum_probs=233.5
Q ss_pred ChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCc--HHhHHHHhhccccchhHHHH
Q 037911 105 DSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHS--VDVFQDLISCTEDCNWAYVK 182 (609)
Q Consensus 105 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~ 182 (609)
-..+|+..|+-..+...++..-..-..+.+++.+.++|.+|++++.-++...+....+ ..+.+.+.. .+.+
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv-------tfiq 288 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV-------TFIQ 288 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe-------eEEe
Confidence 3456888888777655555444444556788888889999999988887664333222 223444444 6888
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH--------HHHHHHHHH--
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTF--------NILTHVFCK-- 252 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--------~~l~~~~~~-- 252 (609)
.|++++|+..|+...+. .|+..+--.|+-++.-.|+.++..+.|.+|+.....+|..-| ..|+.--.+
T Consensus 289 ~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred cccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 99999999999988875 366554433444444568888888889888765433333222 122221111
Q ss_pred -------cCC--hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc
Q 037911 253 -------NGD--VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE 323 (609)
Q Consensus 253 -------~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 323 (609)
.+. .++++-.-.+++.--+.|+-.. -.+-+++.++.-.-..+..+.. ..-...+.+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dle--i~ka~~~lk~ 432 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLE--INKAGELLKN 432 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhh--hhHHHHHHhc
Confidence 111 1111111111111111111100 0111111111111000000000 0112234566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHH
Q 037911 324 GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYC--KEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALN 401 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 401 (609)
|+++.|.++++-+.+..-..-...-+.|-..+. .-.++.+|..+-+..+... .-+......-...-...|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 666666666666655422211112222211111 1234555555555444321 1122222222223344566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037911 402 LVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNI 481 (609)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 481 (609)
.+++....+.......|+. .-.+...|+.++|+..|-++..- +..+..+...+...|....+...|++++-+.... +
T Consensus 512 ~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 6666665543322223322 22344556666666665554211 1234555555666666666666666666555443 3
Q ss_pred CCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 037911 482 KPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAV 561 (609)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 561 (609)
+.|+..++.|...|-+.|+-..|.+++-+-.. -++-+..+...|...|....-+++|+.+|++..-. .|+..-|..+
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHH
Confidence 34555666666666666666666666544433 23445566666666666666666666666655432 6666666655
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037911 562 FNM-FAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMI 597 (609)
Q Consensus 562 ~~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 597 (609)
+.. +.+.|++.+|+.+|+....+ ++-|.....-|+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk-fpedldclkflv 701 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLV 701 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHH
Confidence 533 34566666666666666543 333333333333
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=3e-13 Score=134.91 Aligned_cols=470 Identities=15% Similarity=0.111 Sum_probs=326.4
Q ss_pred HhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhH
Q 037911 100 LRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWA 179 (609)
Q Consensus 100 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (609)
+-.+|+.+.|.+++..++++ .+.++..|..|..+|-..|+.+++...+--+... .|.+.+.|..+.. .
T Consensus 149 lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL---~p~d~e~W~~lad-------l 216 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL---NPKDYELWKRLAD-------L 216 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc---CCCChHHHHHHHH-------H
Confidence 34569999999999999986 3567899999999999999999999987766654 4566677887777 7
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHHcCC
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTF----NILTHVFCKNGD 255 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~l~~~~~~~g~ 255 (609)
..+.|.++.|.-.|.++++.. +++...+---+..|-+.|+...|.+.|.++....-+.|..-+ ...++.+...++
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 789999999999999999976 556555556677888999999999999999876322222222 334566777788
Q ss_pred hHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC--------------------------
Q 037911 256 VDKVNGFLEKIEEE-GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP-------------------------- 308 (609)
Q Consensus 256 ~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-------------------------- 308 (609)
-+.|.+.++..... +-..+...++.++..|.+...++.|......+......+
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 89999988887763 223456678899999999999999999888877622222
Q ss_pred -CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHH
Q 037911 309 -DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG--LSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQI 385 (609)
Q Consensus 309 -~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 385 (609)
+... --++-++...+..+....+.....+.. ..-+...|.-+..+|...|++.+|+.+|..+......-+...|-.
T Consensus 376 ~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 2222 122233444555555555555555555 334567788899999999999999999999998755557788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHH
Q 037911 386 IVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIG--------QDGYVPSLEIYNELM 457 (609)
Q Consensus 386 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~ 457 (609)
+..+|...|.+++|.+.|++..... +-+...-..+...+.+.|++++|.+.++.+. ..+..|+....-...
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999998875 3356667778888999999999999998863 223445556666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-----CCC-----------------CHHHHHHHHHHHhcCCCHhHHHHHHHHH----
Q 037911 458 ESLCKCDSVADALLLKDEMVDRN-----IKP-----------------SLSTYRALICCFCGIGRSGEAVSLMDEM---- 511 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~~-----~~p-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~~---- 511 (609)
..+.+.|+.++-+.+-.+|+... +-| ........+.+-.+.++......-...-
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 77888888887665555554311 101 1112222222222322221111111110
Q ss_pred --HHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCh----hcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 512 --LESGMLPDS--QICRVLINGYCMEKDVNKAEALLGFFAKKFQ-IYDT----ESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 512 --~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
...++..+. ..+.-++.++++.|++++|..+...+..... ..+. ..-...+.+.+..+++..|...++.|.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 011222221 2356677888899999999999888776543 1122 123444566778899999999999887
Q ss_pred Hc
Q 037911 583 RL 584 (609)
Q Consensus 583 ~~ 584 (609)
..
T Consensus 694 ~~ 695 (895)
T KOG2076|consen 694 TQ 695 (895)
T ss_pred HH
Confidence 54
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=9.6e-13 Score=121.73 Aligned_cols=459 Identities=10% Similarity=0.099 Sum_probs=337.4
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHH
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (609)
..+++.+.|..+|+.++. +...+...|...+..=.+++....|..+++.++... |.....+-..+- .=
T Consensus 84 esq~e~~RARSv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyKY~y-------mE 151 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYKYIY-------ME 151 (677)
T ss_pred HhHHHHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHHHHH-------HH
Confidence 456788999999999985 345677788888999999999999999999999763 333444433332 34
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVN 260 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 260 (609)
-..|++..|.++|++..+ ..|+..+|++.++.=.+.+.++.|..+|++.+- +.|++.+|--....-.+.|++..+.
T Consensus 152 E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 578999999999999987 479999999999999999999999999999987 4699999999998888999999999
Q ss_pred HHHHHHHHc-CC-CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC-CHhhHHHHHHHHHhcCCHHHHHHH-----
Q 037911 261 GFLEKIEEE-GF-DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP-DLVTYTTLMNGLCKEGKVREAHQL----- 332 (609)
Q Consensus 261 ~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~----- 332 (609)
.+|+...+. |- .-+...+.+....-..+..++.|.-+|+-.++.=+.- ....|......--+-|+.......
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999988765 21 1122334444444455677888999988887752221 133444444433344554333322
Q ss_pred ---HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH--HHHHHHHHH--------HHccCCHHHH
Q 037911 333 ---FHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT--FTCQIIVQG--------YGKEGRLLSA 399 (609)
Q Consensus 333 ---~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~~~~~A 399 (609)
++.+.+.+ +-|..+|-..+..-...|+.+...++|+..+.. ++|-. ..|...|-. =....+.+.+
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 23333332 447777777788888889999999999999975 44422 122222221 1356889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 400 LNLVVELQRFGVSISRDIYDYLIVAL----CQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDE 475 (609)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
.++++...+. ++....||..+--.| .++.+...|.+++...+ |..|...+|...|..-.+.+++|.+.++|+.
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999998884 455566666554444 46677788888888775 4578899999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 037911 476 MVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG-MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD 554 (609)
Q Consensus 476 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 554 (609)
.++-+. -+..+|......-...|+.+.|..+|+-+++.. +......|.+.|+--...|.+++|..+++.+.+. .+.
T Consensus 463 fle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h 539 (677)
T KOG1915|consen 463 FLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQH 539 (677)
T ss_pred HHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--ccc
Confidence 999763 466788888877778999999999999998753 2223445677777777899999999999999977 444
Q ss_pred hhcHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 037911 555 TESYNAVFNMFA-----EDG-----------DLSKLMELQKRFLR 583 (609)
Q Consensus 555 ~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~ 583 (609)
..+|-++..--. +.| ....|.++|+++..
T Consensus 540 ~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 540 VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 556666554333 333 56678888888754
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=8.2e-13 Score=131.89 Aligned_cols=509 Identities=15% Similarity=0.078 Sum_probs=318.7
Q ss_pred ChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHH
Q 037911 74 SHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELV 153 (609)
Q Consensus 74 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 153 (609)
.+...+...++..|.+.-|-..++.+...+||.++++.++--|.. -.+-|..-|..+.....+.|+++.|.-.|.+++
T Consensus 157 eA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 157 EAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455566788999999999989999999999999999999877764 234477999999999999999999999999999
Q ss_pred HhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCChHHHHHHHH
Q 037911 154 ELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNF----LLNGLLKLNCIDQCWQVYE 229 (609)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~ 229 (609)
+. .|++......-.. .|-+.|+...|.+.|.++.+...+.|..-... .++.+...++.+.|++.++
T Consensus 235 ~~---~p~n~~~~~ers~-------L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 235 QA---NPSNWELIYERSS-------LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred hc---CCcchHHHHHHHH-------HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 87 3455554444444 78899999999999999998764333333333 3455667777799999998
Q ss_pred HHhhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---------------------------CCCCCHHhHHHH
Q 037911 230 EMGRI-GICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE---------------------------GFDPDLVTYNTL 281 (609)
Q Consensus 230 ~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------------~~~~~~~~~~~l 281 (609)
..... +-..+...+++++..+.+...++.+......+... +..++..+. .+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 87652 22456677888999999999999998888777652 112222221 12
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCC--ccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037911 282 ISSYCKKGRLNDAFYLYRIMYRRN--VLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEG 359 (609)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 359 (609)
+-++.+....+....+.....+.+ +.-+...|..+..++...|++.+|+.+|..+......-+...|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223333333344444444444444 333566788888888999999999999998887755556778888888888889
Q ss_pred ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCCh
Q 037911 360 KMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQR--------FGVSISRDIYDYLIVALCQDNRP 431 (609)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~~~~ 431 (609)
..++|.+.|+..+... +-+...--.|...+.+.|+.++|++.+..+.. .+..|...........+.+.|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 9999999998888652 22444555666777888899988888887542 12333444444444555555554
Q ss_pred HHHHHHHHHHHhC-----CC-----------------CC---------------------------------------CH
Q 037911 432 FAATSLLERIGQD-----GY-----------------VP---------------------------------------SL 450 (609)
Q Consensus 432 ~~a~~~~~~~~~~-----~~-----------------~~---------------------------------------~~ 450 (609)
++-+.....|... -+ .- +.
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 4422221111000 00 00 00
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH---HH-HHHHHHHhcCCCHhHHHHHHHHHHHC-CC--CC
Q 037911 451 ----EIYNELMESLCKCDSVADALLLKDEMVDRNI-KPSLS---TY-RALICCFCGIGRSGEAVSLMDEMLES-GM--LP 518 (609)
Q Consensus 451 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~---~~-~~li~~~~~~g~~~~A~~~~~~~~~~-~~--~p 518 (609)
..+.-++.++++.+++++|+.+...+.+... .-+.. .+ ...+.+.+..+++..|...++.|+.. +. .|
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 1223455566666677777766666654321 11111 11 22334455667777777777666653 11 11
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037911 519 -DSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMI 597 (609)
Q Consensus 519 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 597 (609)
-...|+.......+.|+-.--.+.+..+......-++..+......+...+.+..|+..+-+.... .||...++.+|
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~l 780 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHH
Confidence 112233333334444332222333322222211111223333334456677888888877777644 78877777666
Q ss_pred H
Q 037911 598 H 598 (609)
Q Consensus 598 ~ 598 (609)
.
T Consensus 781 g 781 (895)
T KOG2076|consen 781 G 781 (895)
T ss_pred H
Confidence 4
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=5.4e-12 Score=121.43 Aligned_cols=388 Identities=13% Similarity=0.076 Sum_probs=245.1
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQP--SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVD 257 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (609)
+-+.|.+--+..+....+..|+.- --.+|+.-...|.+.+.++-|..+|....+. ++-+...|...+..--..|..+
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHH
Confidence 334444444444444444444322 1234555555666666666666666666553 2334455555555555556677
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 258 KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
+...+|++....- +-....|......+-..|+...|..++.+..+.... +...|-..+.....+..++.|..+|.+..
T Consensus 568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 7777777666552 223344555555666677777777777777766544 56667777777777777777777777766
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 037911 338 HRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT-FTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRD 416 (609)
Q Consensus 338 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 416 (609)
.. .|+..+|..-+..---.++.++|.+++++.++. .|+. ..|..+.+.+-+.++.+.|.+.|..-.+. ++-...
T Consensus 646 ~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 646 SI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred cc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 53 455566655555555567777777777777664 3443 44666666677777777777766655443 233344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 037911 417 IYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFC 496 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 496 (609)
.|..+...--+.|.+..|..++++....+ +.+...|...|++-.+.|+.+.|..+..+.++. ++-+...|..-|....
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 55555555566667777777777775554 446677777777777777777777777666654 3234455666666655
Q ss_pred cCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHH
Q 037911 497 GIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDT-ESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 575 (609)
+.++-..+...+++. .-|+..+..+...+....++++|++.|...++. .||. .+|.-+...+...|.-++-.
T Consensus 799 ~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred CcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHH
Confidence 555544444444333 446777778888888888999999999998876 4444 67888888888899888888
Q ss_pred HHHHHHHHc
Q 037911 576 ELQKRFLRL 584 (609)
Q Consensus 576 ~~~~~m~~~ 584 (609)
++++++...
T Consensus 872 ev~~~c~~~ 880 (913)
T KOG0495|consen 872 EVLKKCETA 880 (913)
T ss_pred HHHHHHhcc
Confidence 888888743
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=1.3e-11 Score=118.84 Aligned_cols=439 Identities=13% Similarity=0.050 Sum_probs=320.8
Q ss_pred CChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037911 140 NKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN 219 (609)
Q Consensus 140 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 219 (609)
.+.++|+.++..+++- +|.+.+.+. +|++..-++.|.+++++..+. ++.+...|......=-.+|
T Consensus 390 E~~~darilL~rAvec---cp~s~dLwl-----------AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ng 454 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC---CPQSMDLWL-----------ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANG 454 (913)
T ss_pred cChHHHHHHHHHHHHh---ccchHHHHH-----------HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcC
Confidence 3444566666666654 445555443 677888899999999999874 5778888888877777889
Q ss_pred ChHHHHHHHHH----HhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHhH
Q 037911 220 CIDQCWQVYEE----MGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD--LVTYNTLISSYCKKGRLND 293 (609)
Q Consensus 220 ~~~~a~~~~~~----m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 293 (609)
+.+...++.++ +...|+..+...|-.=...|-..|..-.+..+....+..|+.-. -.+|+.-...|.+.+.++-
T Consensus 455 n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~c 534 (913)
T KOG0495|consen 455 NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIEC 534 (913)
T ss_pred CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHH
Confidence 99988888765 45678888888888888888888999889998888887776532 4578888888999999999
Q ss_pred HHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 294 AFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 294 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
|..+|...++.-+. +...|......--..|..+....+|++.... ++.....|-....-+-..|++..|..++....+
T Consensus 535 arAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 535 ARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999888875433 5567777666666778888888888888876 333444555555666678899999999888887
Q ss_pred CCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 037911 374 NGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIY 453 (609)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 453 (609)
... .+...|..-+..-..+..++.|..+|.+.... .++...|..-+....-.+..++|.+++++..+. ++.-...|
T Consensus 613 ~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~ 688 (913)
T KOG0495|consen 613 ANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLW 688 (913)
T ss_pred hCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHH
Confidence 633 26677888888888888899999988887765 567777777777777778888888888877654 23345667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 037911 454 NELMESLCKCDSVADALLLKDEMVDRNIKPS-LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM 532 (609)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 532 (609)
..+...+-+.++++.|.+.|..-.+. + |+ ...|-.+...--+.|.+-.|..++++..-.+ +-+...|...+..-.+
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~-c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKK-C-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELR 765 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcccc-C-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHH
Confidence 77778888888888888777655443 2 44 3455555566666778888888888877654 4466677777888888
Q ss_pred cCCHHHHHHHHHHHHHcC-----------------------------CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 533 EKDVNKAEALLGFFAKKF-----------------------------QIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.|+.+.|..++.+..+.. +.-|+.+.-++...+....++++|.+.|.+.++
T Consensus 766 ~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888887777666555431 133455566677778888899999999999996
Q ss_pred cCCCCC-hhhHHHHHHHHhccc
Q 037911 584 LGFAPN-NLTCKYMIHSLWKGM 604 (609)
Q Consensus 584 ~g~~p~-~~~~~~ll~~~~~~~ 604 (609)
. .|| -.+|.-+..-....|
T Consensus 846 ~--d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 846 K--DPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred c--CCccchHHHHHHHHHHHhC
Confidence 5 444 355655555554444
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=5.4e-13 Score=122.62 Aligned_cols=411 Identities=14% Similarity=0.120 Sum_probs=225.3
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHH----hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhH
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSS----NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWA 179 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (609)
..+.+|++||+.+..+-. ..+-. ..+.+...+.+.|.+++|+..|+..++. .|.-...++.++ .
T Consensus 251 r~fskaikfyrmaldqvp-sink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i--------~ 318 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVP-SINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLII--------C 318 (840)
T ss_pred hhHHHHHHHHHHHHhhcc-ccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhh--------h
Confidence 578899999999996521 11222 2333444567889999999999999976 334445565555 5
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCC------------CHHHHHHHH-----HHHHhcCC--hHHHHHHHHHHhhCCCCCCH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQP------------SIVSCNFLL-----NGLLKLNC--IDQCWQVYEEMGRIGICPNT 240 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~ll-----~~~~~~~~--~~~a~~~~~~m~~~~~~~~~ 240 (609)
+.-.|+.++..+.|.+|+.....+ +....|.-+ .-+-+.+. .++++-.--+++.--+.|+.
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f 398 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF 398 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch
Confidence 677899999999999998643222 333333222 11222111 12222222222222223331
Q ss_pred H-----HHHH----------------HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH-HHh-cCCHhHHHHH
Q 037911 241 H-----TFNI----------------LTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS-YCK-KGRLNDAFYL 297 (609)
Q Consensus 241 ~-----~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~-~g~~~~a~~~ 297 (609)
. .... -..-+.+.|+++.|+++++-+.+..-+.-...-+.|-.. |.+ ..++.+|.++
T Consensus 399 a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqy 478 (840)
T KOG2003|consen 399 AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQY 478 (840)
T ss_pred hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHH
Confidence 1 0000 012245667777777776666554322222222222222 222 2245556555
Q ss_pred HHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc
Q 037911 298 YRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIY 377 (609)
Q Consensus 298 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 377 (609)
-+.....+.. +....+.-.+....+|++++|.+.|++.......-....|| +.-.+-..|++++|++.|-++... +.
T Consensus 479 ad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~ 555 (840)
T KOG2003|consen 479 ADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LL 555 (840)
T ss_pred HHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HH
Confidence 5554433211 22222222233344667777777777776552111112222 122345667777777777665432 12
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 378 PDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELM 457 (609)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
.+......+...|--..+...|++++.+.... ++-|+.+...+...|-+.|+-..|.+..-+-- .-++.+..+...|.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLA 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHH
Confidence 24555666666666677777777777665443 34466677777777777776555555433221 12355666666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 037911 458 ESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALIC-CFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEK 534 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 534 (609)
..|....-+++|+.+|++..- +.|+..-|..|+. ++.+.|++++|+.+|+.... .++-|...+.-|++.+...|
T Consensus 634 ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhcccc
Confidence 777776777777777766543 4477777776663 34456777777777777655 35556666666666665555
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.6e-11 Score=113.63 Aligned_cols=387 Identities=13% Similarity=0.052 Sum_probs=277.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHhH
Q 037911 200 GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD-LVTY 278 (609)
Q Consensus 200 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ 278 (609)
+...|...+-.....+.+.|....|...|.+.... .+-.-..|.-|..... + ++........+ ..| ...-
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~----~e~~~~l~~~l-~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---D----IEILSILVVGL-PSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---h----HHHHHHHHhcC-cccchHHH
Confidence 33455555445555667788899999999887654 3445555554444322 1 22222222221 211 1111
Q ss_pred H-HHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHH
Q 037911 279 N-TLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGL--SPDIVSYNTLIFAY 355 (609)
Q Consensus 279 ~-~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~ 355 (609)
. -+..++-.....+++++-.+.....|..-+...-+....+.....|+++|+.+|+++.+... .-|..+|..++..-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1 12345666667888888888888888765555556666667788899999999999998731 12677888776443
Q ss_pred HHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 037911 356 CKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAAT 435 (609)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 435 (609)
..+- .+..+.+-.-.--+--+.|+..+.+-|+-.++.++|..+|+...+.+. -....|+.+.+-|...++...|.
T Consensus 310 --~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 --NDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred --hhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHH
Confidence 3322 222222211111123456788889999999999999999999999873 36778888899999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC
Q 037911 436 SLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (609)
.-++...+-. +.|-..|-.|.++|.-.+...-|+-+|++..+... .|...|.+|..+|.+.++.++|++.|..+...|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999998765 66889999999999999999999999999988642 578899999999999999999999999999866
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCh---hcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037911 516 MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKF---QIYDT---ESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPN 589 (609)
Q Consensus 516 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (609)
..+...+..|.+.|-+.++.++|...+++.++.. ...+. ..-.-|..-+.+.+++++|..+....... .+.
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e 539 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETE 539 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cch
Confidence 4467889999999999999999999998877632 11222 22233556678899999999887777633 677
Q ss_pred hhhHHHHHHHHhcccc
Q 037911 590 NLTCKYMIHSLWKGME 605 (609)
Q Consensus 590 ~~~~~~ll~~~~~~~~ 605 (609)
..--+.|++.+.+.+.
T Consensus 540 ~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 540 CEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7777888888776654
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=1.2e-12 Score=130.02 Aligned_cols=259 Identities=10% Similarity=0.032 Sum_probs=149.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCC
Q 037911 318 NGLCKEGKVREAHQLFHRMVHRGLSPDIV--SYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGR 395 (609)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (609)
..+...|+.+.|.+++.+..+. .|+.. ........+...|+++.|...++.+.+.. +-+...+..+...+...|+
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh
Confidence 3444445555555555544433 12221 12222344444555555555555554442 1133444445555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 037911 396 LLSALNLVVELQRFGVSISRDIYD-YLIVAL---CQDNRPFAATSLLERIGQDG---YVPSLEIYNELMESLCKCDSVAD 468 (609)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
+++|.+.+..+.+.+.. +...+. ....++ ...+..+++...+..+.... .+.+...+..+...+...|+.++
T Consensus 203 ~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 55555555555544322 222111 111111 11122122233333332221 12477888888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHH---HHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHH
Q 037911 469 ALLLKDEMVDRNIKPSLST---YRALICCFCGIGRSGEAVSLMDEMLESGMLPDS--QICRVLINGYCMEKDVNKAEALL 543 (609)
Q Consensus 469 A~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 543 (609)
|.+++++..+.. ||... ...........++.+.+.+.++...+.. +-|+ ....++.+.+.+.|++++|.+.|
T Consensus 282 A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 282 AQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 999999988764 44332 1112222334578888899998888642 3344 56778999999999999999999
Q ss_pred HHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 544 GFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 544 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
+........|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 359 e~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 359 KNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9533333378888888999999999999999999998753
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=3e-12 Score=126.27 Aligned_cols=252 Identities=10% Similarity=0.038 Sum_probs=151.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHH
Q 037911 321 CKEGKVREAHQLFHRMVHRGLSPDIVSYN--TLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLS 398 (609)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (609)
.+.|+++.|...+.++.+. .|+...+. .....+...|+++.|...++++.+.. +-+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4444555555555544442 23322221 11333444455555555555544432 1133444444455555555555
Q ss_pred HHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037911 399 ALNLVVELQRFGVSISR-------DIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALL 471 (609)
Q Consensus 399 A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (609)
|.+++..+.+.+...+. ..|..++.......+.+.....++.+... .+.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555444322111 11222222222223334444555554222 24577778888888888899999998
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 037911 472 LKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ 551 (609)
Q Consensus 472 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 551 (609)
++++..+.. |+.... ++.+....++.+++.+..+...+.. +-|...+..+...|.+.|++++|.+.|+...+.
T Consensus 285 ~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 888887743 454322 2333445688888998888888643 445667788888999999999999999988876
Q ss_pred CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 552 IYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 552 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.|+...+..+..++.+.|+.++|.+++++.+.
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888888888899999999999998888764
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.3e-09 Score=101.46 Aligned_cols=439 Identities=8% Similarity=0.011 Sum_probs=323.6
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...|-..++-=..++++..|..+|+.++.. ...+...+...+. .=.+...+..|..++++++..-...|
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdv---d~r~itLWlkYae-------~Emknk~vNhARNv~dRAvt~lPRVd 141 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDV---DYRNITLWLKYAE-------FEMKNKQVNHARNVWDRAVTILPRVD 141 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---ccccchHHHHHHH-------HHHhhhhHhHHHHHHHHHHHhcchHH
Confidence 4456666666667788999999999999864 2345556666666 66788999999999999987532222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
. .|--.+..=-..|++..|.++|++-.+ ..|+...|.+.|+.-.+.+.++.|..+++...-- .|++.+|--....
T Consensus 142 q-lWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarF 216 (677)
T KOG1915|consen 142 Q-LWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARF 216 (677)
T ss_pred H-HHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHH
Confidence 2 344444444567999999999999887 5799999999999999999999999999999865 6999999999999
Q ss_pred HHhcCCHhHHHHHHHHHhhC-Cc-cCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCC
Q 037911 285 YCKKGRLNDAFYLYRIMYRR-NV-LPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD--IVSYNTLIFAYCKEGK 360 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~ 360 (609)
-.++|....|..+|+...+. |- .-+...+.+...--.++..++.|.-+|+-..++ ++.+ ...|......--+-|+
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcc
Confidence 99999999999999988763 11 112334444444445677889999999988876 3323 3445555544445666
Q ss_pred hHHHHHH--------HHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH------HHH---HHHH
Q 037911 361 MQESKSL--------LYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRD------IYD---YLIV 423 (609)
Q Consensus 361 ~~~A~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~---~ll~ 423 (609)
.....+. ++.++..+ +.|..+|--.++.-...|+.+...++|++....-++.... +|- ..+-
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 5443332 34444442 4577888888888888999999999999998764322211 111 1111
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 037911 424 ALCQDNRPFAATSLLERIGQDGYVPSLEIYN----ELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIG 499 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 499 (609)
.-....+.+.+.++++..++. ++-...|+. .......++.++..|.+++...+. .-|...+|...|..-.+.+
T Consensus 375 eEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHh
Confidence 223467778888899888662 233334443 344445678999999999988764 4588999999999999999
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhcCCHHHHHHHH
Q 037911 500 RSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ-IYDTESYNAVFNMFAEDGDLSKLMELQ 578 (609)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (609)
++|....+|++.++-+ +-+-.+|......-...|+.+.|..+|..++.... ......|.+.|+--...|.++.|..++
T Consensus 452 efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 9999999999999765 44677888888888889999999999999986532 112356777888778899999999999
Q ss_pred HHHHHc
Q 037911 579 KRFLRL 584 (609)
Q Consensus 579 ~~m~~~ 584 (609)
+++++.
T Consensus 531 erlL~r 536 (677)
T KOG1915|consen 531 ERLLDR 536 (677)
T ss_pred HHHHHh
Confidence 999965
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.8e-11 Score=113.25 Aligned_cols=308 Identities=16% Similarity=0.122 Sum_probs=152.4
Q ss_pred CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhcccc--------------chh--------H
Q 037911 122 IKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTED--------------CNW--------A 179 (609)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~--------~ 179 (609)
...|..-+.....++.+.|..+.|+..|.+.+.. .|-....|..|..+... ..| +
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~---~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR---YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc---CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 3456666677777778888888888887777754 33444444444331100 000 3
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCChH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGI--CPNTHTFNILTHVFCKNGDVD 257 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~ 257 (609)
|....+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++- .+..+-.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~sk 314 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhHH
Confidence 444445555555555555555444444434444444444555555555555554320 013344444432 2221111
Q ss_pred HHHHHHHH-HHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 258 KVNGFLEK-IEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 258 ~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
+..+.+ ....+ +--+.|...+.+-|.-.++.++|...|++.++.+.. ....|+.+.+-|....+...|.+-++..
T Consensus 315 --Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 --LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred --HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 111111 00000 112234444444555555555555555555555433 3455555555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 037911 337 VHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRD 416 (609)
Q Consensus 337 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 416 (609)
.+-+ +.|-..|-.|..+|.-.+...-|+-.|++..+-. +-|...|.+|.++|.+.++.++|++.|......| ..+..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~ 467 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS 467 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence 5542 3355555555555555555555555555555431 2244555555555555555555555555555544 22445
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 037911 417 IYDYLIVALCQDNRPFAATSLLERI 441 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
.+..+...+-+.++..+|...+++.
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5555555555555555555554443
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=3.8e-12 Score=125.58 Aligned_cols=251 Identities=11% Similarity=0.047 Sum_probs=113.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHhHH--HHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHH
Q 037911 251 CKNGDVDKVNGFLEKIEEEGFDPDLVTYN--TLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVRE 328 (609)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 328 (609)
.+.|+++.|...+.++.+. .|+...+. .....+...|+++.|...++++.+..+. +......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4444455555555444433 22222111 1233444445555555555554444322 33444444445555555555
Q ss_pred HHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHH
Q 037911 329 AHQLFHRMVHRGLSPDI-------VSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALN 401 (609)
Q Consensus 329 a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 401 (609)
|.+++..+.+.+..++. ..|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555444322111 01112222222222333333333333221 12244444555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037911 402 LVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNI 481 (609)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 481 (609)
++++..+. .++.... ++.+....++++++.+.++...+.. +.|...+..+...+.+.+++++|.+.|+...+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 55555442 2222111 1222223355555555555554332 334445555566666666666666666666553
Q ss_pred CCCHHHHHHHHHHHhcCCCHhHHHHHHHHHH
Q 037911 482 KPSLSTYRALICCFCGIGRSGEAVSLMDEML 512 (609)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 512 (609)
.|+..++..+...+.+.|+.++|.+++++..
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2555555566666666666666666666554
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=5e-12 Score=125.50 Aligned_cols=288 Identities=11% Similarity=-0.024 Sum_probs=135.1
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhcCCHhH
Q 037911 217 KLNCIDQCWQVYEEMGRIGICPNT-HTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDL--VTYNTLISSYCKKGRLND 293 (609)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 293 (609)
..|+++.|.+.+.+..+. .|+. ..+-....+....|+.+.|.+.+.+..+.. |+. ...-.....+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 356666666666665543 2332 222333455556666666666666665542 332 223334556666667777
Q ss_pred HHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCChHHHHHHHHH
Q 037911 294 AFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAY---CKEGKMQESKSLLYE 370 (609)
Q Consensus 294 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~ 370 (609)
|...++.+.+..+. +...+..+...+...|++++|.+++..+.+.+..+.......-..++ ...+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777666665443 44556666666667777777777777666664332221111111111 112222222333333
Q ss_pred HHHCCC---ccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCC
Q 037911 371 MMGNGI---YPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIV--ALCQDNRPFAATSLLERIGQDG 445 (609)
Q Consensus 371 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~ 445 (609)
+.+... +.+...+..+...+...|+.++|.+++++..+.........+. ++. .....++...+.+.++...+..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 333211 1255556666666666666666666666666653221111000 111 1112233334444444433221
Q ss_pred CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHH
Q 037911 446 YVPSL--EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEM 511 (609)
Q Consensus 446 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 511 (609)
+.+. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122 3333444444444555555554443222222244444444444444445555554444443
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=6.2e-12 Score=117.02 Aligned_cols=219 Identities=14% Similarity=0.048 Sum_probs=113.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHH
Q 037911 323 EGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNL 402 (609)
Q Consensus 323 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 402 (609)
.|+.-+|..-|+..++....++ ..|..+..+|....+.++....|++..+.+. -|..+|..-.+.+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHH
Confidence 4555666666666665432222 1255555556666666666666666655432 2455555555555566666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037911 403 VVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIK 482 (609)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 482 (609)
|++.+..++ -+...|.-+.-+..+.+++.++...|++.+.. ++..+..|+.....+...++++.|.+.|+..++....
T Consensus 417 F~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 666655531 13334444444445555666666666665443 3445556666666666666666666666665543211
Q ss_pred -----CCHHH--HHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 483 -----PSLST--YRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFA 547 (609)
Q Consensus 483 -----p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (609)
.+... -..++.. .=.+++..|+++++++++.. +-....|.+|...-.+.|+.++|+++|++..
T Consensus 495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 01111 1111111 11255666666666665432 1123345566666666666666666665554
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=4.5e-15 Score=139.89 Aligned_cols=260 Identities=16% Similarity=0.124 Sum_probs=98.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccC
Q 037911 316 LMNGLCKEGKVREAHQLFHRMVHRGLSP-DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEG 394 (609)
Q Consensus 316 ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 394 (609)
+...+.+.|++++|+++++.......+| |...|..+...+...++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3455556666666666664433332112 2333333444444566666666666666654322 34445555555 5666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037911 395 RLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQ-DGYVPSLEIYNELMESLCKCDSVADALLLK 473 (609)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 473 (609)
++++|..++....+. .+++..+..++..+...++++++..+++.+.. ...+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666555443 23445555666666677777777777766532 223456777788888888888888888888
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 037911 474 DEMVDRNIKP-SLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQI 552 (609)
Q Consensus 474 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 552 (609)
++.++.. | |......++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|...+++..+.. +
T Consensus 170 ~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 170 RKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 8888754 5 46667778888888888888888887776643 4556677788888888888888888888888752 4
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 553 YDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 553 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.|+.....+..++...|+.++|.++.++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4677778888888888888888888877653
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=6.2e-15 Score=138.95 Aligned_cols=261 Identities=18% Similarity=0.176 Sum_probs=85.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 037911 131 LIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNF 210 (609)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (609)
.++..+.+.|++++|++++.+.... ...|.+...+..+.. .....|++++|+..++++.+.+ +-++..+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~-------La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~ 83 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLAD-------LAWSLGDYDEAIEAYEKLLASD-KANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc-ccccccccccccccc-------cccccccccccccccccccccc-ccccccccc
Confidence 4466677777777777777554433 112334444444444 4556677777777777776654 224555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcC
Q 037911 211 LLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEG-FDPDLVTYNTLISSYCKKG 289 (609)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g 289 (609)
++.. ...+++++|.+++++..+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred cccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 5555 5667777777776665443 2445555666666777777777777777765432 2345556666667777777
Q ss_pred CHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 290 RLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLY 369 (609)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 369 (609)
+.++|++.+++..+..+. |......++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|+.+++
T Consensus 161 ~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccc
Confidence 777777777777765433 45566666777777777777666666665542 3344556666777777777777777777
Q ss_pred HHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 037911 370 EMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVEL 406 (609)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 406 (609)
+..+.. +.|......+..++...|+.++|..+.++.
T Consensus 239 ~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 239 KALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred cccccc-cccccccccccccccccccccccccccccc
Confidence 766542 235666666677777777777777666554
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2e-11 Score=113.68 Aligned_cols=220 Identities=13% Similarity=0.067 Sum_probs=158.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 037911 356 CKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAAT 435 (609)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 435 (609)
.-.|+.-.|..-|+..++....+ ...|-.+...|...++.++-...|.+....+. -++.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHH
Confidence 34578888888888887764332 22277777778888888888888888888763 36777888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC
Q 037911 436 SLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (609)
.-|++.+... +.+...|-.+..+..+.+.+++++..|++.+++ ++--+..|+.....+...+++++|.+.|+.+++.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 8888887654 345666777777777888888888888888876 4345577888888888888888888888888763
Q ss_pred CCCC-------HH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 516 MLPD-------SQ--ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 516 ~~p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.|+ .. +-..++-.- -.+++..|.+++.+..+.. +.....|..|...-.+.|+.++|+++|++...
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 232 21 222222222 2378888888888888652 11225688888888888888888888887653
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=2.3e-11 Score=107.46 Aligned_cols=302 Identities=16% Similarity=0.116 Sum_probs=193.6
Q ss_pred CChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHH--hHH
Q 037911 90 LGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVD--VFQ 167 (609)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~ 167 (609)
++...+.++=.....++++|.+.|-.+.+ ..+-+.++...|.+.+.+.|..+.|+.+.+.+.+. ++.+.... ...
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~ 111 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQ 111 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 34445555544556788899999988875 23446777788899999999999999999988876 33332222 334
Q ss_pred HHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHH
Q 037911 168 DLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT----HTF 243 (609)
Q Consensus 168 ~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~ 243 (609)
.+.+ -|...|-++.|.++|..+.+.| .--..+...|+..|-..++|++|+++-+++.+.+-.+.. ..|
T Consensus 112 qL~~-------Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 112 QLGR-------DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHH-------HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 4555 7888888888888888888754 334556777888888888888888888888775433321 233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc
Q 037911 244 NILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE 323 (609)
Q Consensus 244 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 323 (609)
.-|...+....+++.|..++++..+.+ +.++..--.+.+.+...|+++.|.+.++...+.++.--..+...|..+|...
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 444444555677777788777777653 1133333445567777788888888887777765544445566677777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc---cCCHHHHH
Q 037911 324 GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGK---EGRLLSAL 400 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~ 400 (609)
|+.++....+..+.+... ....-..+-..-....-.+.|...+.+-+.. .|+...+..++..... .|...+.+
T Consensus 263 g~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL 338 (389)
T COG2956 263 GKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESL 338 (389)
T ss_pred CCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhH
Confidence 777777777777776532 2222223333323333345555555444443 5777777777765533 23345555
Q ss_pred HHHHHHH
Q 037911 401 NLVVELQ 407 (609)
Q Consensus 401 ~~~~~~~ 407 (609)
..++.|.
T Consensus 339 ~~lr~mv 345 (389)
T COG2956 339 DLLRDMV 345 (389)
T ss_pred HHHHHHH
Confidence 5555554
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.8e-11 Score=111.67 Aligned_cols=289 Identities=10% Similarity=-0.006 Sum_probs=222.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 037911 309 DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQ 388 (609)
Q Consensus 309 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (609)
+......-.+-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+-.++.+. .+-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 4455555566677888999999999998886 3556666766777888999988888888888875 3446688999988
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037911 389 GYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVAD 468 (609)
Q Consensus 389 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
.|...|+..+|.++|.+....+.. =...|-.....|.-.|..++|...+....+.- +....-+--+.--|.+.++.+-
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 888889999999999988765422 24567788888988898899988877663221 1111112224445778899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHccCCHHHHHHH
Q 037911 469 ALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLES--GML----PDSQICRVLINGYCMEKDVNKAEAL 542 (609)
Q Consensus 469 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~g~~~~A~~~ 542 (609)
|.++|.+..... +-|+..++-+.......+.+.+|..+|+..... .+. --..+++.|+.+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999988753 246777888887777889999999999988731 111 1334688999999999999999999
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccc
Q 037911 543 LGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGME 605 (609)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 605 (609)
+++..... +.+..++.+++-.|...|+++.|+..|.+.+ .+.||..+...++......++
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~~~ 537 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIEDSE 537 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHhhh
Confidence 99988653 6678899999999999999999999999999 779999999999887665543
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.9e-11 Score=106.84 Aligned_cols=286 Identities=16% Similarity=0.181 Sum_probs=160.7
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH------HhHHHHHHHHHhcCCHh
Q 037911 219 NCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDL------VTYNTLISSYCKKGRLN 292 (609)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~ 292 (609)
++.++|.++|-+|.+.. +-+..+.-.|.+.|-+.|.+|.|+.+.+.+.+. ||. .....|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 44455555555554421 122233334445555555555555555555443 221 12333445555566666
Q ss_pred HHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChHHHHHHH
Q 037911 293 DAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDI----VSYNTLIFAYCKEGKMQESKSLL 368 (609)
Q Consensus 293 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~ 368 (609)
.|+++|..+.+.+.- -......|+..|-...+|++|+++-+++.+.|-.+.. ..|--|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 666666665553321 2344455666666666666666666665554332221 23333444444556677777777
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037911 369 YEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVP 448 (609)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 448 (609)
.+..+.+.+ ....--.+.+.....|+++.|.+.++...+.+..--+.+...+..+|...|++.+....+.++.+....+
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 777665322 3344445566677777777777777777777665566677777778888888777777777775543333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---CCCHhHHHHHHHHHHHC
Q 037911 449 SLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG---IGRSGEAVSLMDEMLES 514 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~ 514 (609)
..-..+...-....-.+.|..++.+-+.+ +|+...+..+|..... .|...+...+++.|+..
T Consensus 283 --~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 --DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred --cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33333444444445555666555554443 2888888888876543 35566667777777654
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=6.3e-11 Score=108.15 Aligned_cols=292 Identities=13% Similarity=0.107 Sum_probs=201.3
Q ss_pred cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 288 KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSL 367 (609)
Q Consensus 288 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 367 (609)
.|+|.+|+++..+-.+.+-. ....|..-..+.-..|+.+.+-+++.+.-+.--.++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 56777777777666555444 33445555566666777777777777776653344555555666666677777777777
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 037911 368 LYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISR-------DIYDYLIVALCQDNRPFAATSLLER 440 (609)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
++++.+.+. -+........++|.+.|++.....++.++.+.+.--+. .++..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 777666542 24556666777777777777777777777776654443 2444555544444443444445555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH
Q 037911 441 IGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDS 520 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 520 (609)
.... .+.++..-..++.-+.++|+.++|.++..+..+++..|+ ...+ -.+.+-++.+.-++..++-.+. .+-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 5222 345666777888889999999999999999988876555 2222 2345677888777777777663 34566
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037911 521 QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPN 589 (609)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (609)
..+.+|...|.+.+.+.+|...|+...+. .|+...|+.+.+++.+.|+..+|.+.+++.+..-..|+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 88899999999999999999999988776 78889999999999999999999999988875544444
No 51
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.56 E-value=2.5e-10 Score=110.31 Aligned_cols=462 Identities=16% Similarity=0.175 Sum_probs=280.6
Q ss_pred ChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHH
Q 037911 74 SHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELV 153 (609)
Q Consensus 74 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 153 (609)
..+..+++.|+..+.+-..--+.++.+.+-|+-+.|....+...+ +...+..+|+.+.-.+....+|++|++.|..+.
T Consensus 25 kgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 25 KGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred hHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 345556777888888888888889889999999999999988875 456688999999999999999999999999999
Q ss_pred HhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 154 ELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
.. .+.+..++..+.- ...+.|+++.....-.++.+.. +.....|..+..+..-.|+...|..+.++..+
T Consensus 103 ~~---~~dN~qilrDlsl-------LQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 103 KI---EKDNLQILRDLSL-------LQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred hc---CCCcHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 4577888888766 6788999999998888888754 34455778888888888999999999998876
Q ss_pred CC-CCCCHHHHHHHH------HHHHHcCChHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 037911 234 IG-ICPNTHTFNILT------HVFCKNGDVDKVNGFLEKIEEEGFDPDLV-TYNTLISSYCKKGRLNDAFYLYRIMYRRN 305 (609)
Q Consensus 234 ~~-~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 305 (609)
.. ..|+...+.... ....+.|.+++|.+.+...... ..|-. .-..-...+.+.++.++|..++..++..+
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 53 246666554332 2344567777777776665433 12222 22334456677788888888888887764
Q ss_pred ccCCHhhHHH-HHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCccCHHH
Q 037911 306 VLPDLVTYTT-LMNGLCKEGKVREAH-QLFHRMVHRGLSPDIVSYNTL-IFAYCKEGKMQESKSLLYEMMGNGIYPDTFT 382 (609)
Q Consensus 306 ~~p~~~~~~~-ll~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 382 (609)
||...|.. +..++.+-.+.-++. .+|....+. .|....-..+ ++......-.+....++..+++.|+++-.
T Consensus 250 --Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf-- 323 (700)
T KOG1156|consen 250 --PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF-- 323 (700)
T ss_pred --chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh--
Confidence 44444443 333443333333333 555554443 1111111111 11111111123334455555666654422
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHH
Q 037911 383 CQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIY--NELMESL 460 (609)
Q Consensus 383 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~ 460 (609)
..+...|-.....+ +++++.. .|...+. ..|. ....+ ...--+|....| -.++..+
T Consensus 324 -~dl~SLyk~p~k~~----~le~Lvt--------~y~~~L~---~~~~----f~~~D--~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 324 -KDLRSLYKDPEKVA----FLEKLVT--------SYQHSLS---GTGM----FNFLD--DGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred -hhhHHHHhchhHhH----HHHHHHH--------HHHhhcc---cccC----CCccc--ccccCCchHHHHHHHHHHHHH
Confidence 22222221111111 1111100 0000000 0000 00000 000014444444 4466778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 037911 461 CKCDSVADALLLKDEMVDRNIKPSLS-TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKA 539 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 539 (609)
-+.|+++.|..+.+..+++. |+.. -|..=.+.+...|++++|...+++..+.. .+|..+-.--+....+.++.++|
T Consensus 382 D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHH
Confidence 88888888888888887753 5443 34444477788889999998888888765 45666555667777788888888
Q ss_pred HHHHHHHHHcCC-CC----Ch-hcHHHH--HHHHHhcCCHHHHHHHHHHH
Q 037911 540 EALLGFFAKKFQ-IY----DT-ESYNAV--FNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 540 ~~~~~~~~~~~~-~~----~~-~~~~~l--~~~~~~~g~~~~A~~~~~~m 581 (609)
.++.....+.|. .. +. -+|-.+ +.+|.++|++..|++-|...
T Consensus 459 ~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 459 EEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 888888887763 10 11 112222 35677788777776544443
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=1.2e-10 Score=106.44 Aligned_cols=287 Identities=11% Similarity=0.083 Sum_probs=140.2
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 037911 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNG 261 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 261 (609)
..|++..|.+...+..+.+ +-....|..-..+--+.|+.+.+-..+.+..+.--.++...+-.........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4566666666666655544 222223333444455556666666666665543212333444444555555566666665
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCH-------hhHHHHHHHHHhcCCHHHHHHHHH
Q 037911 262 FLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDL-------VTYTTLMNGLCKEGKVREAHQLFH 334 (609)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~ 334 (609)
-++++.+.+ +.+........++|.+.|++.....++..+.+.|.--+. .+|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 555555543 224445555556666666666666666666555543222 133333333333333333333333
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 037911 335 RMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSIS 414 (609)
Q Consensus 335 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 414 (609)
..... ..-+...-.+++.-+.+.|+.++|.++..+.. +.+.++.
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-----------------------------------k~~~D~~ 297 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-----------------------------------KRQWDPR 297 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-----------------------------------HhccChh
Confidence 33222 12223333333444444444444444444444 4333322
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 415 RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICC 494 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 494 (609)
-...-.+.+-+++..-.+..++..... +.++..+.+|...|.+.+.|.+|.+.|+...+. .|+..+|+.+.++
T Consensus 298 ----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~ 370 (400)
T COG3071 298 ----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADA 370 (400)
T ss_pred ----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHH
Confidence 111112233344444444444443221 223355666666666666666666666655553 3666666666666
Q ss_pred HhcCCCHhHHHHHHHHHHH
Q 037911 495 FCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~ 513 (609)
+.+.|+..+|.++.++...
T Consensus 371 ~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 371 LDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHcCChHHHHHHHHHHHH
Confidence 6666666666666666553
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=5.5e-12 Score=122.22 Aligned_cols=282 Identities=12% Similarity=0.033 Sum_probs=143.4
Q ss_pred ChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 037911 141 KFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG--FQPSIVSCNFLLNGLLKL 218 (609)
Q Consensus 141 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~ 218 (609)
+..+|...|+.+... .+....+...+.+ +|...+++++|.++|+.+.+.. ...+.+.|.+.+..+-+
T Consensus 334 ~~~~A~~~~~klp~h---~~nt~wvl~q~Gr-------ayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~- 402 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH---HYNTGWVLSQLGR-------AYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD- 402 (638)
T ss_pred HHHHHHHHHHhhHHh---cCCchHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-
Confidence 344555555553322 2333344555555 5666666666666666655432 11244555555544322
Q ss_pred CChHHHHHHH-HHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHhHHHH
Q 037911 219 NCIDQCWQVY-EEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDP-DLVTYNTLISSYCKKGRLNDAFY 296 (609)
Q Consensus 219 ~~~~~a~~~~-~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~ 296 (609)
+-++..+ +++... -+-.+.+|..+.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|..
T Consensus 403 ---~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 403 ---EVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred ---hHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHH
Confidence 1122222 122221 1234556666666666666666666666665554 22 44555555555556666666666
Q ss_pred HHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037911 297 LYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGI 376 (609)
Q Consensus 297 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 376 (609)
.|+..+..... +-.+|..+...|.+.++++.|+-.|+...+.+ +-+.+....+...+-+.|+.++|+.+++++.....
T Consensus 477 ~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 477 SFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred HHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 66655543222 23334445555666666666666666655542 11334444445555566666666666666554432
Q ss_pred ccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037911 377 YPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQ 443 (609)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
+ |+..--..+..+...+++++|+..++++++.- +-+...+..+...|.+.|+.+.|..-|.-+.+
T Consensus 555 k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 555 K-NPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred C-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 2 33333344445555566666666666665542 22344455555566666665666555554433
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=8.3e-12 Score=121.04 Aligned_cols=197 Identities=15% Similarity=0.033 Sum_probs=92.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 037911 310 LVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSP-DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQ 388 (609)
Q Consensus 310 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (609)
..+|.++.++|.-.++.+.|++.|++..+. .| ...+|+.+..-+....++|.|...|+..+.... -+...|.-+.-
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYGlG~ 497 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYGLGT 497 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHhhhh
Confidence 345555555555555555555555555443 22 344444444444455555555555555443210 01122333344
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037911 389 GYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVAD 468 (609)
Q Consensus 389 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
.|.+.++++.|.-.|+++.+.+ +.+.+....+...+-+.|+.++|+.++++....... ++..--.-+..+...+++++
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred heeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHH
Confidence 4555555555555555555444 224444444445555555555555555555333322 22222223333444455555
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 037911 469 ALLLKDEMVDRNIKPS-LSTYRALICCFCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 469 A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (609)
|+..++++++. .|+ ...+..+...|.+.|+.+.|+.-|--|.+
T Consensus 576 al~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 576 ALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 55555555542 233 23344444555555555555555555543
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=6.8e-10 Score=99.42 Aligned_cols=178 Identities=14% Similarity=0.159 Sum_probs=119.2
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHh
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKV 183 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 183 (609)
.|+..|..+++.... .+......+-..++..+.+.|++++|...+..+.+. .. .+..+...+.- .+.-.
T Consensus 36 rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~--~~~el~vnLAc-------c~FyL 104 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DD--APAELGVNLAC-------CKFYL 104 (557)
T ss_pred ccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CC--CCcccchhHHH-------HHHHH
Confidence 588899999888773 333334456667888999999999999999988864 22 23333333333 56678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 037911 184 GLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFL 263 (609)
Q Consensus 184 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 263 (609)
|.+.+|..+-.+.. .++..-..|.+.-.+.++-++-..+.+.+... ...--+|.......-.+.+|++++
T Consensus 105 g~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 89999988776542 23333344556666778877777777766542 233334555555556788999999
Q ss_pred HHHHHcCCCCCHHhHHHHH-HHHHhcCCHhHHHHHHHHHhhC
Q 037911 264 EKIEEEGFDPDLVTYNTLI-SSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 264 ~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
..+... .|+-...|.-+ -+|.+..-++-+.++++-....
T Consensus 175 krvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 175 KRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 998876 45656666554 4666777778888887777654
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=8.5e-11 Score=117.23 Aligned_cols=432 Identities=12% Similarity=0.086 Sum_probs=246.3
Q ss_pred cCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 119 DLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 119 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
..|+.|+..+|..+|.-|+..|+.+.|- +|.-|.- +..|....+|+.++. +..+.++.+.+.
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~--ksLpv~e~vf~~lv~-------sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI--KSLPVREGVFRGLVA-------SHKEANDAENPK-------- 79 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc--ccccccchhHHHHHh-------cccccccccCCC--------
Confidence 4688999999999999999999999887 7766654 366788889999988 677778877775
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHh----hCCCC-CCHHHH-------------HHHHHHHHHcCChH
Q 037911 199 VGFQPSIVSCNFLLNGLLKLNCIDQ---CWQVYEEMG----RIGIC-PNTHTF-------------NILTHVFCKNGDVD 257 (609)
Q Consensus 199 ~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~----~~~~~-~~~~~~-------------~~l~~~~~~~g~~~ 257 (609)
.|...+|..|+.+|.+.|++.. +.+.++... ..|+- |..+.+ ...+....-.|-++
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 5888999999999999999755 222222221 12211 111110 11222233334444
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 258 KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKG-RLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
.+++++..+....... + ...+++-..... .+++-..+.+...+ .|+..+|..+++.....|+++.|..++.+|
T Consensus 157 qllkll~~~Pvsa~~~-p--~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNA-P--FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHhhCCcccccc-h--HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 4444444433221110 0 011122222211 22333322222222 478888888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHH-----------------
Q 037911 337 VHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSA----------------- 399 (609)
Q Consensus 337 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A----------------- 399 (609)
.+.|++.+.+-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+-.+..+|....+
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsa 307 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSA 307 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHH
Confidence 888888888877777765 677888888888888888888888877766665553321111
Q ss_pred -------HHHH------------HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHH
Q 037911 400 -------LNLV------------VELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD---GYVPSLEIYNELM 457 (609)
Q Consensus 400 -------~~~~------------~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~ 457 (609)
.+.+ .+..-.|+.....+|........ .|+-++..++...+... -...++..|..++
T Consensus 308 a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l 386 (1088)
T KOG4318|consen 308 ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL 386 (1088)
T ss_pred HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence 1111 11111233334444443333322 45445555555555211 1112334444444
Q ss_pred HHHHhcCCHHHHHHHHH--HHHHC---------------CCCCCH----------------------------HHHHHHH
Q 037911 458 ESLCKCDSVADALLLKD--EMVDR---------------NIKPSL----------------------------STYRALI 492 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~--~~~~~---------------~~~p~~----------------------------~~~~~li 492 (609)
.-|.+.-+..-...++. +.+.. ...||. ..-+.++
T Consensus 387 rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 44433211111111110 00000 001111 1122333
Q ss_pred HHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCChhcHHHHHHHHHhcCC
Q 037911 493 CCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ--IYDTESYNAVFNMFAEDGD 570 (609)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 570 (609)
..++..-+..+++..-+.....- -+ ..|..|++-++...+.+.|..+.++...... ..|..-+..+.+.+.+.+.
T Consensus 467 l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 33444444444443333322211 11 4578888888888889999888887764322 3455668888899999999
Q ss_pred HHHHHHHHHHHHHc
Q 037911 571 LSKLMELQKRFLRL 584 (609)
Q Consensus 571 ~~~A~~~~~~m~~~ 584 (609)
..++.++++++.+.
T Consensus 544 l~dl~tiL~e~ks~ 557 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSS 557 (1088)
T ss_pred HHHHHHHHhhhhHH
Confidence 99999999998863
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.50 E-value=6.3e-09 Score=100.91 Aligned_cols=426 Identities=14% Similarity=0.102 Sum_probs=264.7
Q ss_pred HHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037911 136 LAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGL 215 (609)
Q Consensus 136 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 215 (609)
+...++|...+++.+.+++.. |...++....+- .+...|+-++|....+.....+ ..+.+.|..+.-.+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~---~eHgeslAmkGL-------~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKF---PEHGESLAMKGL-------TLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhC---CccchhHHhccc-------hhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 345567777788888887653 333343333333 5667888888888888777644 45666788777777
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHH
Q 037911 216 LKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAF 295 (609)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 295 (609)
....++++|++.|......+ +.|...+.-+.-.-++.|+++.....-....+.. +.....|..+..++.-.|+...|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888887754 4456677766666677788777777766666552 224556777778888888888888
Q ss_pred HHHHHHhhCC-ccCCHhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChHHHHHH
Q 037911 296 YLYRIMYRRN-VLPDLVTYTTLM------NGLCKEGKVREAHQLFHRMVHRGLSPDIV-SYNTLIFAYCKEGKMQESKSL 367 (609)
Q Consensus 296 ~~~~~~~~~~-~~p~~~~~~~ll------~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~ 367 (609)
.++++..+.. -.|+...|.... ....+.|..++|.+.+..-... ..|.. .-..-...+.+.+++++|..+
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 8888887653 234544443322 3445677788888777665543 12222 223445566788888999999
Q ss_pred HHHHHHCCCccCHHHHHHHHH-HHHccCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhC
Q 037911 368 LYEMMGNGIYPDTFTCQIIVQ-GYGKEGRLLSAL-NLVVELQRFGVSISRDIYDYL-IVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
+..++.. .||...|...+. ++.+-.+..+++ .+|....+.- |.......+ +..+....-.+.....+......
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 9888876 466655555444 443344444444 5555554431 111111111 11111111123333455556666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCHHHHH--HHHHHHhcCCCHhHHHHHH
Q 037911 445 GYVPSLEIYNELMESLCKCDSVADALLLKDEMV----DRN----------IKPSLSTYR--ALICCFCGIGRSGEAVSLM 508 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----------~~p~~~~~~--~li~~~~~~g~~~~A~~~~ 508 (609)
|+++ ++..+...|-.-...+-..++.-.+. ..| -.|....|. .++..+-+.|+++.|..++
T Consensus 318 g~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 318 GVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred CCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6553 23333333322221111111111111 111 135555554 4567788999999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037911 509 DEMLESGMLPDS-QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 509 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 586 (609)
+.+++ ..|+. ..|..-.+.+...|++++|..+++...+.. .+|...=..-+.-..++++.++|.++.....+.|.
T Consensus 395 d~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 395 DLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 99995 45664 456677788999999999999999998664 44554444667777889999999999999988775
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=2.4e-08 Score=96.76 Aligned_cols=452 Identities=13% Similarity=0.103 Sum_probs=287.8
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..|...+..+..+|+...-+..|+.++... .......++.-.+. .....|-.+-++.++++.++. ++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraL-pvtqH~rIW~lyl~-------Fv~~~~lPets~rvyrRYLk~----~P 169 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRAL-PVTQHDRIWDLYLK-------FVESHGLPETSIRVYRRYLKV----AP 169 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-chHhhccchHHHHH-------HHHhCCChHHHHHHHHHHHhc----CH
Confidence 4466677777888888888888888888662 22344556666665 556777788899999998873 34
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCC--
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIG------ICPNTHTFNILTHVFCKNGDVD---KVNGFLEKIEEEGFDPD-- 274 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~-- 274 (609)
..-+-.+..+++.+++++|-+.+....... .+.+-..|.-+.+...+.-+.- ....++..+... -+|
T Consensus 170 ~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~ 247 (835)
T KOG2047|consen 170 EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQL 247 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHH
Confidence 446777888889999999998888875422 1334455665555555543322 233344444432 344
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc----------------C------CHHHHHHH
Q 037911 275 LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE----------------G------KVREAHQL 332 (609)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----------------~------~~~~a~~~ 332 (609)
...|.+|.+.|.+.|.+++|.++|++....- .+..-|+.+.+.|+.- + +++-.+.-
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 3468999999999999999999999887642 2344455555544321 1 12333344
Q ss_pred HHHHHHCCC-----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC------HHHHHHHHHHHHccCC
Q 037911 333 FHRMVHRGL-----------SPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPD------TFTCQIIVQGYGKEGR 395 (609)
Q Consensus 333 ~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~ 395 (609)
|+.+...+. +.++..|..-+.. ..|+..+....+.++.+. +.|. ...|..+.+.|-..|+
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCc
Confidence 444443310 1123333333322 356777778888887764 3332 2457888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----------------CHHHHHH
Q 037911 396 LLSALNLVVELQRFGVSIS---RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVP-----------------SLEIYNE 455 (609)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~ 455 (609)
++.|..+|++..+...+-- ..+|......-.+..+++.|.++++......-.| +...|..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 9999999999888754422 3455555566667778888888888873322111 2345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc--
Q 037911 456 LMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD-SQICRVLINGYCM-- 532 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-- 532 (609)
.++..-..|-++....+|+++++..+ .++........-+-...-++++.+.|++-+..--.|+ ..+|+..+.-+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 66666677888999999999988765 2333222222334456678899999988776422343 3456666666554
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCChh--cHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHH
Q 037911 533 -EKDVNKAEALLGFFAKKFQIYDTE--SYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNN--LTCKYMIHS 599 (609)
Q Consensus 533 -~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~ 599 (609)
..+++.|..+|+++.+ +++|... .|-.....=-+.|....|++++++.... +.+.. ..||+.|.-
T Consensus 562 gg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKK 631 (835)
T ss_pred cCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence 2468999999999997 5555432 2333333334578888999999997643 44442 456766653
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=1e-07 Score=92.56 Aligned_cols=472 Identities=10% Similarity=0.068 Sum_probs=303.8
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHH
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (609)
-.+++...-...|+.++......--...|-..+......+-.+.+..+++..++. .+..-...+. .+
T Consensus 113 ~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~------~P~~~eeyie-------~L 179 (835)
T KOG2047|consen 113 IKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV------APEAREEYIE-------YL 179 (835)
T ss_pred HhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc------CHHHHHHHHH-------HH
Confidence 3456666677777777765544445566777788888888888888888888865 2223444555 67
Q ss_pred HHhCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHhhCCCCCC--HHHHHHHHHH
Q 037911 181 VKVGLIRESFKTFRKTLDVG------FQPSIVSCNFLLNGLLKLNCID---QCWQVYEEMGRIGICPN--THTFNILTHV 249 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~--~~~~~~l~~~ 249 (609)
++.++.++|-+.+...+... .+.+-..|+-+-+...++.+.- ....+++.+..+ -+| ...|++|...
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 79999999999998876422 2445556777777776654433 234455555442 345 4678999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----------------C------CHhHHHHHHHHHhhCCc-
Q 037911 250 FCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK----------------G------RLNDAFYLYRIMYRRNV- 306 (609)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g------~~~~a~~~~~~~~~~~~- 306 (609)
|.+.|.+++|..+|++.... ..++.-|..+.++|+.- | +++-.+.-|+.+.+...
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 99999999999999998765 23444444444444421 1 12223333444433211
Q ss_pred ----------cCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 037911 307 ----------LPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD------IVSYNTLIFAYCKEGKMQESKSLLYE 370 (609)
Q Consensus 307 ----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (609)
.-++..|..-.. +..|+..+....+.+..+. +.|. ...|..+...|-..|+++.|..+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 112333333222 3356677888888888775 3332 24678888999999999999999999
Q ss_pred HHHCCCccC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----------------CHHHHHHHHHHHHhcCC
Q 037911 371 MMGNGIYPD---TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSI-----------------SRDIYDYLIVALCQDNR 430 (609)
Q Consensus 371 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~ll~~~~~~~~ 430 (609)
..+-..+-- ..+|..-...=.+..+++.|+++.+......-.+ +...|...++..-..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 987532211 2345555555667888999999988876643221 12345566666667788
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc---CCCHhHHHH
Q 037911 431 PFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSL-STYRALICCFCG---IGRSGEAVS 506 (609)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~---~g~~~~A~~ 506 (609)
++....+++++.+..+. ++...-.....+-.+.-++++.++|++-+..-..|+. ..|+..+.-+.+ ...++.|..
T Consensus 493 festk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 78888888988766544 3333333333455567788999998876665444555 457776655443 357899999
Q ss_pred HHHHHHHCCCCCCHHHHHHH--HHHHHccCCHHHHHHHHHHHHHcCCCCCh--hcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 507 LMDEMLESGMLPDSQICRVL--INGYCMEKDVNKAEALLGFFAKKFQIYDT--ESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
+|+++++ |.+|...-+.-| ...--+.|-...|..++++.... ..+.. ..||..|.--...=-.....++|++++
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 9999998 776654432222 23333568889999999997754 22222 568887765544333556678888888
Q ss_pred HcCCCCChhhHHHHH
Q 037911 583 RLGFAPNNLTCKYMI 597 (609)
Q Consensus 583 ~~g~~p~~~~~~~ll 597 (609)
+. -||...-.+.|
T Consensus 650 e~--Lp~~~~r~mcl 662 (835)
T KOG2047|consen 650 ES--LPDSKAREMCL 662 (835)
T ss_pred Hh--CChHHHHHHHH
Confidence 55 67766655544
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=8e-11 Score=104.11 Aligned_cols=226 Identities=11% Similarity=0.074 Sum_probs=186.0
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.|.+.|.+.+|.+.|+..++. .|-+.+|..|-.+|.+..+...|+.++.+-.+. ++-|+....-+.+.+-..++.++
T Consensus 232 CylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 232 CYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHH
Confidence 799999999999999998875 577888999999999999999999999998774 33344444567778888899999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|.++++...+.. +.++.....+...|.-.++.+-|+..|+++++.|+. +...|+.+.-+|.-.+++|-++.-|.+...
T Consensus 309 a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 309 ALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 999999988763 345667777777888889999999999999999987 888899998888889999999999998887
Q ss_pred CCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 037911 339 RGLSPD--IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFG 410 (609)
Q Consensus 339 ~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 410 (609)
.-..|+ ..+|..+.......||+..|.+.|+-.+.++. -+...++.|.-.-.+.|++++|..++.......
T Consensus 387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 644444 35677777778888999999999998887642 256778888888889999999999998877654
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=1.7e-10 Score=119.15 Aligned_cols=258 Identities=10% Similarity=0.066 Sum_probs=177.4
Q ss_pred CChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchh--HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037911 140 NKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW--AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK 217 (609)
Q Consensus 140 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 217 (609)
+.+++|...|+++++. .|.....+..+..++..... .+...+++++|...++++++.+ +.+..++..+..++..
T Consensus 275 ~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4578899999999876 44555555444332211100 1224567899999999999876 5677888888888889
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 037911 218 LNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYL 297 (609)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 297 (609)
.|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|+..
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHH
Confidence 999999999999998864 345677888888999999999999999999887422 223334445556778899999999
Q ss_pred HHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-C
Q 037911 298 YRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD-IVSYNTLIFAYCKEGKMQESKSLLYEMMGN-G 375 (609)
Q Consensus 298 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~ 375 (609)
+++..+....-+...+..+...+...|+.++|...+.++... .|+ ....+.+...|+..| +.|...++.+.+. .
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 999876532224555777888888999999999999887654 334 334455555667666 4777777776653 1
Q ss_pred CccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 037911 376 IYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFG 410 (609)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 410 (609)
..+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 12222222 33344555666666655 7776654
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=6.5e-10 Score=114.81 Aligned_cols=219 Identities=10% Similarity=0.034 Sum_probs=158.9
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHH
Q 037911 217 KLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFY 296 (609)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 296 (609)
..+++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|+.
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4567899999999998864 4467788888889999999999999999999875 3356778888999999999999999
Q ss_pred HHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037911 297 LYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGI 376 (609)
Q Consensus 297 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 376 (609)
.+++..+.++. +...+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++...
T Consensus 394 ~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-- 470 (553)
T PRK12370 394 TINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-- 470 (553)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--
Confidence 99999987654 333334445557778999999999999887532224555777888888999999999999998765
Q ss_pred ccC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037911 377 YPD-TFTCQIIVQGYGKEGRLLSALNLVVELQRFG-VSISRDIYDYLIVALCQDNRPFAATSLLERIGQDG 445 (609)
Q Consensus 377 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 445 (609)
.|+ ....+.+...|...| ++|...++.+.+.. ..+.. +......+.-.|+ .+...+++++.+.+
T Consensus 471 ~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~--~~~~~~~~~~~g~-~~~~~~~~~~~~~~ 536 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN--PGLLPLVLVAHGE-AIAEKMWNKFKNED 536 (553)
T ss_pred cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC--chHHHHHHHHHhh-hHHHHHHHHhhccc
Confidence 333 344555666677777 47777777765531 11111 1124445555666 44444457775544
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=9.7e-11 Score=116.85 Aligned_cols=273 Identities=14% Similarity=0.148 Sum_probs=165.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 037911 192 TFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGF 271 (609)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 271 (609)
++-.+...|+.|+.++|..++.-||..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445555666677777777777777777766666 6666665555666666666666666666655554
Q ss_pred CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHH
Q 037911 272 DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV-HRGLSPDIVSYNT 350 (609)
Q Consensus 272 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~ 350 (609)
.|...+|..|..+|...||+.. |+...+ -...+...+...|.......++..+. ..+..||..+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 4556667777777776666544 222221 11122333444444444444443322 1234445433
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037911 351 LIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKE-GRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDN 429 (609)
Q Consensus 351 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 429 (609)
.+....-.|.++.+++++..+...... .+ ....++-+... ..+++-..+.+...+ .+++.+|..++.+-...|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~-~p--~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWN-AP--FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccc-ch--HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 333344556677777776555322111 11 11123333322 234444444444333 478888888888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 037911 430 RPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGR 500 (609)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 500 (609)
+.+.|..++.+|.+.|++.+..-|..|+-+ .++..-++.+.+.|.+.|+.|+..|+...+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888889888888888777777655 67788888888888888888888888877776666555
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=2.4e-08 Score=99.63 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 535 DVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKR 580 (609)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (609)
=+++|.++++-+.... ..+..+|..-...|.+.|++--|++.+.+
T Consensus 472 PLe~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 472 PLEEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 4677888887777663 33557788888888888888777776553
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-08 Score=97.41 Aligned_cols=446 Identities=13% Similarity=0.061 Sum_probs=279.7
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhC---CCCCcH-H------hH----
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVK---DCPHSV-D------VF---- 166 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~-~------~~---- 166 (609)
-..+++..|....+.-. -...+..+....+.++.+..+|++|..++........ ..+.+. . ..
T Consensus 60 ~~~~~y~ra~~lit~~~---le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~ 136 (611)
T KOG1173|consen 60 YLGRQYERAAHLITTYK---LEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLM 136 (611)
T ss_pred HhhhHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCccccccc
Confidence 34456666666654432 2355788888889999999999999998873211100 001110 0 00
Q ss_pred HHH-hhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC----CCCHH
Q 037911 167 QDL-ISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGI----CPNTH 241 (609)
Q Consensus 167 ~~l-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~ 241 (609)
..+ ...+-.-+-.|.....+++|...|.++.. .|+..+..+...... ..-.+.+.++-+..... .-+..
T Consensus 137 ~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e 210 (611)
T KOG1173|consen 137 INLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVE 210 (611)
T ss_pred ccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHH
Confidence 000 00000000167777778888888888765 333333333222111 11122222222222111 11222
Q ss_pred HHHHHHHHH-HHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHH
Q 037911 242 TFNILTHVF-CKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGL 320 (609)
Q Consensus 242 ~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 320 (609)
....+.... ++.-+ +.....-++-.-.+..-+......-..-+...+++.+.+++++...+..+ +....+..-|.++
T Consensus 211 ~l~~lyel~~~k~~n-~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l 288 (611)
T KOG1173|consen 211 RLEILYELKLCKNRN-EESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACL 288 (611)
T ss_pred HHHHHHHhhhhhhcc-ccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHH
Confidence 222222211 11100 01111111111112344556666666777888999999999999887643 3555666667788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHccCCHHHH
Q 037911 321 CKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPD-TFTCQIIVQGYGKEGRLLSA 399 (609)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 399 (609)
...|+..+-..+=..+.+. .+....+|-++...|...|+..+|.+.|.+.... .|. ...|-.....|.-.|..++|
T Consensus 289 ~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQA 365 (611)
T KOG1173|consen 289 YELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQA 365 (611)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHH
Confidence 8888888777777777776 3445678888888888889999999999887754 222 35688888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 400 LNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDR 479 (609)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 479 (609)
+..+...-+.- +-...-+-.+.--|.+.++..-|.+.|....... +.|+...+-+.-.....+.+.+|..+|+..+..
T Consensus 366 maaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 366 MAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred HHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 99888776642 1122223334445677788888888888876543 557778888887777789999999999887632
Q ss_pred --CC---CC-CHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 037911 480 --NI---KP-SLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIY 553 (609)
Q Consensus 480 --~~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 553 (609)
.+ ++ -..+++.|.++|.+.+.+++|+..+++.+... +-+..++.++.-.|...|+++.|.+.|.+.... .|
T Consensus 444 ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p 520 (611)
T KOG1173|consen 444 IKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KP 520 (611)
T ss_pred hhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CC
Confidence 11 11 33567888899999999999999999998753 557888999999999999999999999988855 67
Q ss_pred ChhcHHHHHHHH
Q 037911 554 DTESYNAVFNMF 565 (609)
Q Consensus 554 ~~~~~~~l~~~~ 565 (609)
|-.+-..++..+
T Consensus 521 ~n~~~~~lL~~a 532 (611)
T KOG1173|consen 521 DNIFISELLKLA 532 (611)
T ss_pred ccHHHHHHHHHH
Confidence 665555555433
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=4.8e-10 Score=103.12 Aligned_cols=198 Identities=15% Similarity=0.077 Sum_probs=102.8
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...+..++..+...|++++|...++++++. .|.+...+..+.. .|...|++++|.+.+++..+.. +.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~-------~~~~~~~~~~A~~~~~~al~~~-~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH---DPDDYLAYLALAL-------YYQQLGELEKAEDSFRRALTLN-PNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhhC-CCCH
Confidence 455566666666666676666666666654 2344455555554 5666666666666666666543 3344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGI-CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
..+..+...+...|++++|.+.+++...... ......+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHH
Confidence 4555555666666666666666666554211 1122334444445555555555555555554432 1123344444455
Q ss_pred HHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 285 YCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
+...|++++|...+++..+.. ..+...+..+...+...|+.++|..+.+.+
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555555555555544431 113333334444444445555554444443
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=4.7e-10 Score=110.16 Aligned_cols=261 Identities=19% Similarity=0.184 Sum_probs=163.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-c
Q 037911 311 VTYTTLMNGLCKEGKVREAHQLFHRMVHR-----GL-SPDIV-SYNTLIFAYCKEGKMQESKSLLYEMMGN-----GI-Y 377 (609)
Q Consensus 311 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~ 377 (609)
.+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|++++.. |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555667777777777777777766543 21 12222 2233556677777777777777776542 11 1
Q ss_pred c-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHH
Q 037911 378 P-DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSL-EIYNE 455 (609)
Q Consensus 378 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 455 (609)
| -..+++.|..+|.+.|++++|..+++...+ ++++... ...|.+ ..++.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~-~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLG-ASHPEVAAQLSE 330 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhc-cChHHHHHHHHH
Confidence 1 124456666667777777777766644332 2222110 111222 23455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC----C--CC-CHH
Q 037911 456 LMESLCKCDSVADALLLKDEMVDR---NIKPS----LSTYRALICCFCGIGRSGEAVSLMDEMLESG----M--LP-DSQ 521 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~p-~~~ 521 (609)
++..++..+++++|..+++...+. -+.++ ..+++.|...|...|++++|.+++++++... - .+ ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 666677778888888887765532 11222 3468888899999999999999998887631 1 11 245
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCh-hcHHHHHHHHHhcCCHHHHHHHHHHHHH---c---CCCCC
Q 037911 522 ICRVLINGYCMEKDVNKAEALLGFFAKK----FQ-IYDT-ESYNAVFNMFAEDGDLSKLMELQKRFLR---L---GFAPN 589 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~---g~~p~ 589 (609)
.++.+...|.+.+++.+|.++|...... |. .|++ .+|..|+..|...|++++|.++.+.... . +..|+
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 6788888999999988888888754432 22 3444 5788999999999999999999887762 1 24555
Q ss_pred hhhHHHHHHHH
Q 037911 590 NLTCKYMIHSL 600 (609)
Q Consensus 590 ~~~~~~ll~~~ 600 (609)
..........+
T Consensus 491 ~~~~~~~~~~~ 501 (508)
T KOG1840|consen 491 VEDEKLRLADL 501 (508)
T ss_pred hhHHHHhhhHH
Confidence 55555444443
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=6.8e-08 Score=92.93 Aligned_cols=28 Identities=7% Similarity=0.213 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 242 TFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
+...-...+.+.|++++|..+|+.+.+.
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3333444455555555555555555443
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=8.2e-10 Score=101.53 Aligned_cols=199 Identities=12% Similarity=0.088 Sum_probs=122.3
Q ss_pred HHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 037911 163 VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHT 242 (609)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 242 (609)
...+..+.. .|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...
T Consensus 31 ~~~~~~la~-------~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~ 101 (234)
T TIGR02521 31 AKIRVQLAL-------GYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDV 101 (234)
T ss_pred HHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH
Confidence 444555555 6777788888888887777653 3456666677777777777777777777776643 334556
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHH
Q 037911 243 FNILTHVFCKNGDVDKVNGFLEKIEEEGFD-PDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLC 321 (609)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 321 (609)
+..+...+...|++++|.+.+++....... .....+..+...+...|++++|.+.+++..+.... +...+..+...+.
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 180 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHH
Confidence 666666777777777777777776654211 12334555556666666666666666666654322 3445555666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 322 KEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
..|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666666666554 22344444455555556666666666555544
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=8.5e-09 Score=92.56 Aligned_cols=426 Identities=12% Similarity=0.073 Sum_probs=266.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037911 134 HILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLN 213 (609)
Q Consensus 134 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 213 (609)
.-+...+++..|+.+++--.........+...| +.- .|...|++++|+..+..+.+.. .++...+..|..
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~-------C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAc 99 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAH-------CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLAC 99 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHH-------HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHH
Confidence 334556788999998877664311111222222 222 6889999999999999988754 677777777887
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhH
Q 037911 214 GLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLND 293 (609)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 293 (609)
.+.-.|.+.+|..+-.+.. .+.-.-..|++.-.+.++-++...+.+.+.+. ..---+|.+.....-.+++
T Consensus 100 c~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQe 169 (557)
T KOG3785|consen 100 CKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQE 169 (557)
T ss_pred HHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHH
Confidence 7778899999998876642 34445556677777888887777777666542 2223344455555567899
Q ss_pred HHHHHHHHhhCCccCCHhhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChHHHHHHH---
Q 037911 294 AFYLYRIMYRRNVLPDLVTYTT-LMNGLCKEGKVREAHQLFHRMVHRGLSPDIV-SYNTLIFAYCKEGKMQESKSLL--- 368 (609)
Q Consensus 294 a~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~--- 368 (609)
|+++|+.....+ |+-...|. +.-+|.+..-++-+.++++-..+. .||.. ..|.......+.=+-..|..-.
T Consensus 170 AIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 170 AIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred HHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 999999998763 34444444 334566777788888888887775 44543 3333332222221111111111
Q ss_pred -----------HHHHHCCC------------ccC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 369 -----------YEMMGNGI------------YPD-----TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDY 420 (609)
Q Consensus 369 -----------~~~~~~~~------------~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 420 (609)
+.+.+++. -|. +..-..|+-.|.+.++.++|..+.+++.- .++.-|-.
T Consensus 246 adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~Eyil 321 (557)
T KOG3785|consen 246 ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYIL 321 (557)
T ss_pred HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHH
Confidence 12222210 011 12223445557889999999998877542 23333322
Q ss_pred HHHHHHhcCC-------hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037911 421 LIVALCQDNR-------PFAATSLLERIGQDGYVPSL-EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALI 492 (609)
Q Consensus 421 ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 492 (609)
-.-.+...|+ ..-|...|+-...++..-|. .--..+..++.-..++++++-+++.+...-...|...+ .+.
T Consensus 322 Kgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~A 400 (557)
T KOG3785|consen 322 KGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLA 400 (557)
T ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHH
Confidence 2223333333 23344455555444443332 22344556666678899999999888876443444444 467
Q ss_pred HHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh-cHHHHHHHHHhcCCH
Q 037911 493 CCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTE-SYNAVFNMFAEDGDL 571 (609)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 571 (609)
.+++..|++.+|.++|-.+....++.+......|.++|.+.++.+.|.+++-++.. ..+.. ....+..-|.+.|.+
T Consensus 401 QAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999987665565555557788999999999999887755441 22333 344455778899999
Q ss_pred HHHHHHHHHHHHcCCCCChhhH
Q 037911 572 SKLMELQKRFLRLGFAPNNLTC 593 (609)
Q Consensus 572 ~~A~~~~~~m~~~g~~p~~~~~ 593 (609)
--|.+.|+.+... .|+..-|
T Consensus 478 yyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 478 YYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHhhhHHHcc--CCCcccc
Confidence 9999999998854 5655554
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.6e-07 Score=83.48 Aligned_cols=309 Identities=15% Similarity=0.073 Sum_probs=220.3
Q ss_pred CCCHHhHHHHHH--HHHhcCCHhHHHHHHHHHhhCC-ccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-H
Q 037911 272 DPDLVTYNTLIS--SYCKKGRLNDAFYLYRIMYRRN-VLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIV-S 347 (609)
Q Consensus 272 ~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~ 347 (609)
.|...+....+. +.+..++-..|...+-.+.... ..-|+.....+.+.+...|+.++|...|+..... .|+.. .
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 333333333443 3344555555555554444332 3346777888999999999999999999988764 33322 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037911 348 YNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQ 427 (609)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 427 (609)
.......+.+.|+.++...+...+.... .-+...|-.-+......+++..|+.+.++..+.+. -+...+-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 2222233457788888888888776542 12334455555566678899999999999887752 345556666678889
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-CCCHhHHH
Q 037911 428 DNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALI-CCFCG-IGRSGEAV 505 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~ 505 (609)
.+++.+|.-.|+...... +-+..+|..|+.+|...|++.+|.-.-+..... ...+..+.+.+. ..+.. -.--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999886543 457889999999999999999999887776643 224556666553 33333 33447899
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 506 SLMDEMLESGMLPDS-QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 506 ~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
++++...+ +.|+. ...+.+...|...|..+.++.+++..... .+|....+.|.+.+...+.+++|...|...+..
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999885 45664 35677888899999999999999998876 889999999999999999999999999999844
Q ss_pred CCCCChhh
Q 037911 585 GFAPNNLT 592 (609)
Q Consensus 585 g~~p~~~~ 592 (609)
.|+...
T Consensus 501 --dP~~~~ 506 (564)
T KOG1174|consen 501 --DPKSKR 506 (564)
T ss_pred --CccchH
Confidence 565543
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=3.9e-12 Score=83.62 Aligned_cols=50 Identities=24% Similarity=0.487 Sum_probs=47.7
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 037911 553 YDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWK 602 (609)
Q Consensus 553 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 602 (609)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+++|++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999986
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=6.8e-10 Score=98.38 Aligned_cols=234 Identities=12% Similarity=0.020 Sum_probs=165.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037911 349 NTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQD 428 (609)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 428 (609)
+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|-+.|.+..+++.|+.++.+-.+.- +-++....-+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56677777777777777777777665 4566677777777777777777777777766652 23444444556667777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHH
Q 037911 429 NRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLM 508 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 508 (609)
++.+++.++++...+.. +.++.....+...|.-.++.+.|+.+|+++.+.|+ -++..|..+.-+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77778888887775553 44566666666677777888888888888888776 56677777777777788888888888
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037911 509 DEMLESGMLPD--SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 509 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 586 (609)
+++...--.|+ ..+|-.+.......||+..|.+.|+...... .-+...++.|.-.-.+.|++++|..++..... +
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS--V 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--h
Confidence 88776543343 3456667777778888888888888777542 22346778887777788888888888887763 3
Q ss_pred CCCh
Q 037911 587 APNN 590 (609)
Q Consensus 587 ~p~~ 590 (609)
.|+.
T Consensus 459 ~P~m 462 (478)
T KOG1129|consen 459 MPDM 462 (478)
T ss_pred Cccc
Confidence 5553
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=1.3e-08 Score=101.54 Aligned_cols=129 Identities=17% Similarity=0.135 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 452 IYNELMESLCKCDSVADALLLKDEMVDRNIKPS-LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGY 530 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 530 (609)
++..+...|-..|++++|+++.++.+++. |+ +..|..-...+.+.|++++|.+.++.+.... .-|..+-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHH
Confidence 44666788889999999999999999865 55 5667777889999999999999999999876 34777778888999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChh------c--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 531 CMEKDVNKAEALLGFFAKKFQIYDTE------S--YNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~~------~--~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.+.|++++|.+++....+.+..|-.. . ....+.+|.+.|++..|++.|....+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999988766422211 1 24456789999999999876665543
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=8.5e-09 Score=101.46 Aligned_cols=249 Identities=18% Similarity=0.202 Sum_probs=141.3
Q ss_pred CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC-----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 159 CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV-----G-FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
.|.-..++..+.. .|...|++++|+.+++..++. | ..|.+.+.
T Consensus 195 ~P~~~~~~~~La~-------~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~------------------------ 243 (508)
T KOG1840|consen 195 DPERLRTLRNLAE-------MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASM------------------------ 243 (508)
T ss_pred CchHHHHHHHHHH-------HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHH------------------------
Confidence 3555556666666 899999999999999988763 1 01111111
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCC-C-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC-
Q 037911 233 RIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE-----GFD-P-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRR- 304 (609)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 304 (609)
.+.+...|...+++++|..+|+++... |-. | -..+++.|..+|.+.|++++|...+++..+.
T Consensus 244 ----------l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 244 ----------LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred ----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 112344444445555555544444321 111 1 1234555555566666655555555444321
Q ss_pred ----Cc-cCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 305 ----NV-LPDL-VTYTTLMNGLCKEGKVREAHQLFHRMVHR---GLSP----DIVSYNTLIFAYCKEGKMQESKSLLYEM 371 (609)
Q Consensus 305 ----~~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (609)
+. .|.+ ..++.+...++..+++++|..+++...+. -..+ -..+++.|...|...|++++|.++++++
T Consensus 314 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 314 EKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 11 1122 23455666777778888888777765442 0111 2356788888888888888888888877
Q ss_pred HHCC----C--cc-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037911 372 MGNG----I--YP-DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 372 ~~~~----~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
+... - .+ ....++.|...|.+.+++.+|..+|.+... +. .....
T Consensus 394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~----------------------------i~-~~~g~ 444 (508)
T KOG1840|consen 394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD----------------------------IM-KLCGP 444 (508)
T ss_pred HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH----------------------------HH-HHhCC
Confidence 6431 1 11 123455566666666666666666643321 22 11112
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 445 GYVPSLEIYNELMESLCKCDSVADALLLKDEMV 477 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 477 (609)
+.+....+|..|...|.+.|++++|+++.+.+.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 223345677888888888888888888877665
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=9.4e-08 Score=94.89 Aligned_cols=406 Identities=13% Similarity=0.036 Sum_probs=240.7
Q ss_pred CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 037911 161 HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT 240 (609)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 240 (609)
.+..+|..+.- +....|+++.+-+.|++.... .-.....|+.+...+...|.-..|..++++-....-.|+.
T Consensus 321 nd~ai~d~Lt~-------al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 321 NDAAIFDHLTF-------ALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred chHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 45666666655 677778888888888777652 2344556777777777777777777777765443222333
Q ss_pred H-HHHHHHHHHHH-cCChHHHHHHHHHHHHc--CC--CCCHHhHHHHHHHHHhc-----------CCHhHHHHHHHHHhh
Q 037911 241 H-TFNILTHVFCK-NGDVDKVNGFLEKIEEE--GF--DPDLVTYNTLISSYCKK-----------GRLNDAFYLYRIMYR 303 (609)
Q Consensus 241 ~-~~~~l~~~~~~-~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~ 303 (609)
. .+-..-..|.+ .+.+++++.+-.+.... +. ......|..+.-+|... ....++++.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 3 33323333333 25566666665555541 11 12233444444444321 124667777777776
Q ss_pred CCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCccCHHH
Q 037911 304 RNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN-GIYPDTFT 382 (609)
Q Consensus 304 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 382 (609)
.+.. |......+.--|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+...+. |. |...
T Consensus 473 ~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l 549 (799)
T KOG4162|consen 473 FDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVL 549 (799)
T ss_pred cCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhh
Confidence 5443 222222333445667778888888888777655556777777777777777888888777766543 11 1111
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC----------------------------CCCCCHHHHHHHHHHHHhcCChHHH
Q 037911 383 CQIIVQGYGKEGRLLSALNLVVELQRF----------------------------GVSISRDIYDYLIVALCQDNRPFAA 434 (609)
Q Consensus 383 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------------------~~~~~~~~~~~ll~~~~~~~~~~~a 434 (609)
...-+..-..-++.++|+.....+... ...-...++..+.......+. .+
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~--~~ 627 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK--SA 627 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh--hc
Confidence 111111112234444443332222110 011112233333222221111 11
Q ss_pred HHHHHHHHhCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 037911 435 TSLLERIGQDGYV--PS------LEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVS 506 (609)
Q Consensus 435 ~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 506 (609)
..-.. +...... |+ ...|......+.+.+..++|...+.+..... ......|......+...|..++|.+
T Consensus 628 ~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 628 GSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred ccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 00000 1111111 22 3355666777888899999988888776642 2345567777777888999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHH--HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 507 LMDEMLESGMLPD-SQICRVLINGYCMEKDVNKAEA--LLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 507 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.|..+... .|+ .....++..++.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.|....+
T Consensus 706 af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 706 AFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999864 454 5577899999999998777777 999998775 55778999999999999999999999998875
Q ss_pred c
Q 037911 584 L 584 (609)
Q Consensus 584 ~ 584 (609)
.
T Consensus 783 L 783 (799)
T KOG4162|consen 783 L 783 (799)
T ss_pred h
Confidence 4
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.3e-11 Score=81.09 Aligned_cols=47 Identities=51% Similarity=0.882 Sum_probs=19.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 309 DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAY 355 (609)
Q Consensus 309 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 355 (609)
|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=9.1e-07 Score=85.40 Aligned_cols=445 Identities=15% Similarity=0.116 Sum_probs=253.9
Q ss_pred cCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHH
Q 037911 102 CQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYV 181 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (609)
..+++++|++..+.+.. ..+.+...+..-+-++.+.+.|++|.++.+.-... .......|.-.- ...
T Consensus 24 ~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAY--------c~Y 90 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAY--------CEY 90 (652)
T ss_pred cchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHH--------HHH
Confidence 45789999999998885 23556777777788899999999998654432211 001111122221 567
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChHHHH
Q 037911 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICP-NTHTFNILTHVFCKNGDVDKVN 260 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 260 (609)
+.++.++|+..++-.. +.+..+...-...+-+.|++++|..+|+.+.+.+.+. +...-..++.+ +-.-.+.
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH
Confidence 9999999999998322 2334466666778889999999999999998765321 11111122211 1101111
Q ss_pred HHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCC-------------ccCCH-hhHHHHHHHHHhcC
Q 037911 261 GFLEKIEEEGFDPD--LVTYNTLISSYCKKGRLNDAFYLYRIMYRRN-------------VLPDL-VTYTTLMNGLCKEG 324 (609)
Q Consensus 261 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------~~p~~-~~~~~ll~~~~~~~ 324 (609)
+.+.. ...|+ -..+-.....+...|++.+|+++++...+.+ +.-.. ..-..|.-.+-..|
T Consensus 163 -~~q~v---~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 163 -LLQSV---PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred -HHHhc---cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 12222 22221 2223333456778999999999999883211 11011 11234455667889
Q ss_pred CHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChH-HHHHHHHHHHHC-----------CCccCHHHHHHHHH
Q 037911 325 KVREAHQLFHRMVHRGLSPDI----VSYNTLIFAYCKEGKMQ-ESKSLLYEMMGN-----------GIYPDTFTCQIIVQ 388 (609)
Q Consensus 325 ~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~-~A~~~~~~~~~~-----------~~~~~~~~~~~l~~ 388 (609)
+.++|..++...++... +|. +.-|.|+..-....-++ .++..++..... .-.-...--+.++.
T Consensus 239 qt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998753 343 23344443321111111 122222222111 00001111122222
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037911 389 GYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALC--QDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSV 466 (609)
Q Consensus 389 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (609)
.|. +..+.+.++...... ......+..++.... +...+..+..++....+........+....+......|++
T Consensus 318 l~t--nk~~q~r~~~a~lp~---~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 318 LFT--NKMDQVRELSASLPG---MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHh--hhHHHHHHHHHhCCc---cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 222 223333333322211 222334444444332 2234567777777775554444456667777888889999
Q ss_pred HHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHC--CCCCCHHHH----HHHHHHHHc
Q 037911 467 ADALLLKD--------EMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLES--GMLPDSQIC----RVLINGYCM 532 (609)
Q Consensus 467 ~~A~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~----~~l~~~~~~ 532 (609)
+.|.+++. .+.+.+..|- +...+...+.+.++.+.|..++.+++.. .-.+..... ..++..-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99999998 5555444444 4455666677778877788888777642 112222333 333333446
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 533 EKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 581 (609)
.|+.++|..+++++.+.. ++|..+..-++.+|++. +.+.|..+-+.+
T Consensus 471 ~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred cCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 799999999999999753 66778888888888876 567777665544
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=2.9e-08 Score=93.82 Aligned_cols=196 Identities=13% Similarity=0.038 Sum_probs=100.3
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..|..+..++...|++++|...|+++++. .|.....+..+.. .|...|++++|+..|++.++.. +.+.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~-------~~~~~g~~~~A~~~~~~Al~l~-P~~~ 132 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL---RPDMADAYNYLGI-------YLTQAGNFDAAYEAFDSVLELD-PTYN 132 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 344666666666667777776666666654 3455566666665 6666677777777666666643 3345
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSY 285 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 285 (609)
.+|..+..++...|++++|.+.|++..+. .|+..........+...++.++|...+++..... .++...+ .+ ..
T Consensus 133 ~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~ 206 (296)
T PRK11189 133 YAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VE 206 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HH
Confidence 55666666666666666666666666553 2332211111222233455666666665543321 2222111 11 12
Q ss_pred HhcCCHhHHHHHHHHHhh---CCc--cC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 286 CKKGRLNDAFYLYRIMYR---RNV--LP-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~~~---~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
...|+...+ +.++.+.+ ..+ .| ...+|..+...+.+.|++++|...|++..+.
T Consensus 207 ~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 207 FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 223343332 23333321 111 00 1234555556666666666666666666554
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=3.4e-07 Score=90.06 Aligned_cols=273 Identities=10% Similarity=0.026 Sum_probs=152.1
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
....|..+...+...|+.+++.+.+....+..+.............. .+...|++++|.+.+++..+.. +.+
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~-------~~~~~g~~~~A~~~~~~~l~~~-P~~ 76 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEAL-------SAWIAGDLPKALALLEQLLDDY-PRD 76 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHC-CCc
Confidence 35566666667777777777777776666553322222222211122 5677888888888888887753 344
Q ss_pred HHHHHH---HHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 037911 205 IVSCNF---LLNGLLKLNCIDQCWQVYEEMGRIGICPN-THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNT 280 (609)
Q Consensus 205 ~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (609)
...+.. ........+..+.+.+.++... ...|+ ......+...+...|++++|...+++..+.. +.+...+..
T Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~ 153 (355)
T cd05804 77 LLALKLHLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHA 153 (355)
T ss_pred HHHHHHhHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHH
Confidence 444442 1111122344555555554411 12233 3444456667778888888888888888764 334566777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCcc-CCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHH
Q 037911 281 LISSYCKKGRLNDAFYLYRIMYRRNVL-PDL--VTYTTLMNGLCKEGKVREAHQLFHRMVHRGL-SPDIVSY-N--TLIF 353 (609)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~li~ 353 (609)
+..++...|++++|...+++....... |+. ..|..+...+...|++++|..++++...... .+..... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 778888888888888888887764321 222 2345677778888888888888888754321 1111111 1 2222
Q ss_pred HHHHcCChHHHHHH--HHHHHHCCC--ccCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 354 AYCKEGKMQESKSL--LYEMMGNGI--YPDTFTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 354 ~~~~~g~~~~A~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
-+...|....+.++ +........ ............++...|+.++|..++..+..
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33334433333332 111111000 00111222445556667777777777766654
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=2.6e-07 Score=91.87 Aligned_cols=409 Identities=13% Similarity=0.051 Sum_probs=246.2
Q ss_pred CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC
Q 037911 122 IKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF 201 (609)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 201 (609)
+.-++..|..+.-++.+.|+|..+.+.|++.... .-.....|..+.. .|...|.-..|+.+++......-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~---~~~~~e~w~~~al-------s~saag~~s~Av~ll~~~~~~~~ 388 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF---SFGEHERWYQLAL-------SYSAAGSDSKAVNLLRESLKKSE 388 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh---hhhhHHHHHHHHH-------HHHHhccchHHHHHHHhhccccc
Confidence 3446677777777777888888888888777643 2234455555555 67777777788888777665443
Q ss_pred CC-CHHHHHHHHHHHHh-cCChHHHHHHHHHHhhC--CC--CCCHHHHHHHHHHHHHc-----------CChHHHHHHHH
Q 037911 202 QP-SIVSCNFLLNGLLK-LNCIDQCWQVYEEMGRI--GI--CPNTHTFNILTHVFCKN-----------GDVDKVNGFLE 264 (609)
Q Consensus 202 ~~-~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~ 264 (609)
.| ++..+-..-..|.+ .+.+++++++-.+.... +. ......|..+.-+|... ....++++.++
T Consensus 389 ~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 389 QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 33 44444444444443 35566666555555441 11 12233444444444321 22457777777
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC
Q 037911 265 KIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR-GLSP 343 (609)
Q Consensus 265 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p 343 (609)
+..+.+.. |+.+...+.--|+..++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+...+. |.
T Consensus 469 ~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-- 545 (799)
T KOG4162|consen 469 EAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-- 545 (799)
T ss_pred HHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--
Confidence 77766422 333333334456677788888888888877755557777877777777888888888877776543 11
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---------------------C-------CccCHHHHHHHHHHHHccCC
Q 037911 344 DIVSYNTLIFAYCKEGKMQESKSLLYEMMGN---------------------G-------IYPDTFTCQIIVQGYGKEGR 395 (609)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~~ 395 (609)
|......-+..-...++.++++.....++.- | ..-...++..+...... +
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~ 623 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--Q 623 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--h
Confidence 1111111111112234444444433332210 0 00011222222211110 0
Q ss_pred HHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037911 396 LLSALNLVVELQRFGVS--IS------RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVA 467 (609)
Q Consensus 396 ~~~A~~~~~~~~~~~~~--~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (609)
.+.+..-.. +...-.. |+ ...+......+.+.+..+++...+.+..... +-....|......+...|.++
T Consensus 624 ~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 624 LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhH
Confidence 000000000 1111111 12 2234455567778888788888887775443 556777888888888999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHhHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 468 DALLLKDEMVDRNIKPS-LSTYRALICCFCGIGRSGEAVS--LMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLG 544 (609)
Q Consensus 468 ~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (609)
+|.+.|......+ |+ +.....+..++.+.|+..-|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+.|.
T Consensus 702 EA~~af~~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 702 EAKEAFLVALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 9999999888754 54 4678888999999999888888 999999876 5678899999999999999999999999
Q ss_pred HHHHcC
Q 037911 545 FFAKKF 550 (609)
Q Consensus 545 ~~~~~~ 550 (609)
...+..
T Consensus 779 aa~qLe 784 (799)
T KOG4162|consen 779 AALQLE 784 (799)
T ss_pred HHHhhc
Confidence 887654
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=3.8e-08 Score=83.57 Aligned_cols=199 Identities=15% Similarity=0.081 Sum_probs=160.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.|...|++..|..-++++++.+ +.+..+|..+...|.+.|+.+.|.+-|++..... +-+..+.|.-...+|..|++++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHH
Confidence 7999999999999999999875 5567788889999999999999999999988753 4567888888889999999999
Q ss_pred HHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFD-PDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 259 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
|...|++......- --..+|..+.-+..+.|+.+.|.+.|++.++.... ...+...+.....+.|++-.|...++...
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 99999998875221 22457888888888999999999999998887554 45566778888889999999999998888
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHH
Q 037911 338 HRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTC 383 (609)
Q Consensus 338 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (609)
..+. ++..+.-..|..-...|+-+.+-++=..+... .|...-|
T Consensus 201 ~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 201 QRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred hccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 7765 78888878888888889988888777666654 4554443
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=5.3e-08 Score=92.04 Aligned_cols=221 Identities=13% Similarity=0.091 Sum_probs=141.4
Q ss_pred CCChhHHHHHHHHHHHhhCCCCC-cHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037911 139 NNKFSFAMKMLCELVELVKDCPH-SVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK 217 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 217 (609)
.+..+.++..+.+++...+..+. ....+..+.. .|.+.|+.++|+..|++.++.. +.+...|+.+...+..
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~-------~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGV-------LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQ 110 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34556677777777754222222 2345555555 7888899999999998888865 5567888888888888
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 037911 218 LNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYL 297 (609)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 297 (609)
.|++++|.+.|++..+.. +-+..++..+..++...|++++|.+.++...+. .|+..............++.++|...
T Consensus 111 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHH
Confidence 999999999888887742 234667777888888888999998888888876 34332222222334456778888888
Q ss_pred HHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 298 YRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR---GL--S-PDIVSYNTLIFAYCKEGKMQESKSLLYEM 371 (609)
Q Consensus 298 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (609)
|++..... .|+...+ .+ .....|+..++ +.+..+.+. .. . .....|..+...+.+.|++++|...|++.
T Consensus 188 l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 86655332 2222222 22 22334554443 344444422 10 1 12346777777777888888888888887
Q ss_pred HHCC
Q 037911 372 MGNG 375 (609)
Q Consensus 372 ~~~~ 375 (609)
++.+
T Consensus 263 l~~~ 266 (296)
T PRK11189 263 LANN 266 (296)
T ss_pred HHhC
Confidence 7653
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=9.3e-06 Score=75.11 Aligned_cols=305 Identities=10% Similarity=0.010 Sum_probs=215.5
Q ss_pred CCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhh
Q 037911 236 ICPNTHTFNILTHVFCKN--GDVDKVNGFLEKIEEE-GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVT 312 (609)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 312 (609)
++|+..+....+.+++.. ++-..+...+-.+... -++-|+.....+...+...|+.++|+..|++..-.++. +...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhh
Confidence 445555555555555544 4444444444433333 23556778889999999999999999999998765332 2222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc
Q 037911 313 YTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGK 392 (609)
Q Consensus 313 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (609)
...-.-.+.+.|+.+....+...+.... .-....|-.-........+++.|+.+-++.++.+ +.+...+-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 2222334567888888888877776541 1223334334444556788999999999888653 2245556666778889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH-HhcCCHHHHH
Q 037911 393 EGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELM-ESL-CKCDSVADAL 470 (609)
Q Consensus 393 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~ 470 (609)
.|+.++|.-.|+..+... +.+...|.-++..|...|++.+|...-...... ++.+..+...+. ..+ ..-.--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999988875 357889999999999999999998877665332 244555555552 222 2233457888
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 471 LLKDEMVDRNIKPSL-STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 471 ~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
++++..... .|+. .+.+.+...+...|+.++++.++++... ..||....+.|.+.+...+.+.+|.+.|......
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 888887764 3664 3456666788899999999999999985 4789999999999999999999999999988865
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.09 E-value=8.4e-07 Score=87.29 Aligned_cols=304 Identities=13% Similarity=0.069 Sum_probs=177.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCC-HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHH---
Q 037911 93 HEISRVLLRCQSDSVSALTFFNWVKNDLEIKPT-SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQD--- 168 (609)
Q Consensus 93 ~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~--- 168 (609)
...++.+....+++..+.+.+..+........+ ..........+...|++++|.+.++++++. .|.+...+..
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD---YPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHhHH
Confidence 344455555566777766666666543322333 233334455667889999999999988876 3444444331
Q ss_pred HhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 037911 169 LISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTH 248 (609)
Q Consensus 169 l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 248 (609)
... .....|....+.+.++... ...+........+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 86 ~~~-------~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~ 156 (355)
T cd05804 86 AFG-------LGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH 156 (355)
T ss_pred HHH-------hcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 111 1123455555555555421 1222333444556678888999999999999998864 445677888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCC-CCCH--HhHHHHHHHHHhcCCHhHHHHHHHHHhhCCc-cCCHhhH-H--HHHHHHH
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEGF-DPDL--VTYNTLISSYCKKGRLNDAFYLYRIMYRRNV-LPDLVTY-T--TLMNGLC 321 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~-~--~ll~~~~ 321 (609)
++...|++++|...+++...... .++. ..|..+...+...|++++|+.++++...... .+..... + .++..+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 99999999999999998876532 1222 2455677888999999999999999864332 1112111 1 2233333
Q ss_pred hcCCHHHHHHH--HHHHHHCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc--------CHHHHHHHHHH
Q 037911 322 KEGKVREAHQL--FHRMVHRGLS--PDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYP--------DTFTCQIIVQG 389 (609)
Q Consensus 322 ~~~~~~~a~~~--~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~~l~~~ 389 (609)
..|..+.+.++ .......... ...........++...|+.++|..+++.+....... .........-.
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 44433333332 1111111101 111122245666778899999999998886532110 11111222234
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 037911 390 YGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 390 ~~~~~~~~~A~~~~~~~~~ 408 (609)
+...|+.++|++.+.....
T Consensus 317 ~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 317 AFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5677888888888776654
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.1e-06 Score=82.15 Aligned_cols=406 Identities=16% Similarity=0.062 Sum_probs=222.9
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHH
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (609)
-..||++.|+..|..++.- .++|...|.--..+|+..|+|++|.+=-.+.++. .|..+..|..... ++
T Consensus 13 ~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Ga-------a~ 80 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGA-------AL 80 (539)
T ss_pred cccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHH-------HH
Confidence 3457888888888888752 2347777878888888888888887765555544 5667788888887 78
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-hHHH
Q 037911 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD-VDKV 259 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-~~~a 259 (609)
.-.|++++|+..|.+-++.. +.+...++.+..++ ..+.+. +.. .-+...+..+..--...+- .+.+
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred HhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHH
Confidence 88888888888888887754 44455556666655 111111 111 1122222222211100000 1111
Q ss_pred H-HHHHHHHHcCCCCCHHhHH---HHHHHHHhcCCHhHH-HHHHHHHh-hCCccC---------C-------------Hh
Q 037911 260 N-GFLEKIEEEGFDPDLVTYN---TLISSYCKKGRLNDA-FYLYRIMY-RRNVLP---------D-------------LV 311 (609)
Q Consensus 260 ~-~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a-~~~~~~~~-~~~~~p---------~-------------~~ 311 (609)
. .+++.+... +-++..|. .++.+.......+.- +..-..+. ..+..| . ..
T Consensus 148 ~~~~l~~~~~~--p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~ 225 (539)
T KOG0548|consen 148 YVKILEIIQKN--PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAH 225 (539)
T ss_pred HHHHHHHhhcC--cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhh
Confidence 1 222222211 11111111 122211111000000 00000000 000111 0 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHH-------H
Q 037911 312 TYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTC-------Q 384 (609)
Q Consensus 312 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~ 384 (609)
-...+.++..+..+++.|.+.+....+.. -+..-++....+|...|.+.+....-+...+.|.. ....| .
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence 23456677777888888888888887764 45666677777788888887777766666655422 11222 2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc
Q 037911 385 IIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSL-EIYNELMESLCKC 463 (609)
Q Consensus 385 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 463 (609)
.+..+|.+.++++.|+..|.+.......|+.. .+....+++....+...-.+ |.. .-...-...+.+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKK 371 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhc
Confidence 23446666778888888888766554333221 12222233333333332221 211 1122225556677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 037911 464 DSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALL 543 (609)
Q Consensus 464 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 543 (609)
|++..|++.|.+++..+ +-|...|....-+|.+.|.+..|+.-.+..++.. ++....|..=..++....++++|.+.|
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888765 2456778888888888888888887777777542 223334444455555566777788777
Q ss_pred HHHHHc
Q 037911 544 GFFAKK 549 (609)
Q Consensus 544 ~~~~~~ 549 (609)
.+..+.
T Consensus 450 ~eale~ 455 (539)
T KOG0548|consen 450 QEALEL 455 (539)
T ss_pred HHHHhc
Confidence 777754
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=6e-07 Score=79.05 Aligned_cols=323 Identities=14% Similarity=0.148 Sum_probs=145.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH-H
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNF-L 211 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l 211 (609)
+..+.+..+|.+|++++....++ .|.+......+.- .|....++.+|-..++++-.. .|...-|.. -
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er---~p~~rAgLSlLgy-------CYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~ 84 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELER---SPRSRAGLSLLGY-------CYYRLQEFALAAECYEQLGQL--HPELEQYRLYQ 84 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc---CccchHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHH
Confidence 33344444555555555444433 2223333444443 444555555555555555432 233333321 2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 037911 212 LNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNIL--THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKG 289 (609)
Q Consensus 212 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 289 (609)
...+-+.+.+.+|+.+...|... ++...-..- .......+++..+..++++....| +..+.+.......+.|
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 23344445555555555544331 111111111 111223344555555554443221 2333333333444555
Q ss_pred CHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCH-----------
Q 037911 290 RLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLS-------------PDI----------- 345 (609)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-------------p~~----------- 345 (609)
+++.|++-|+...+.+-......|+..+. +.+.|+++.|++...++.++|+. ||+
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 55555555555544322223344443332 23344555555555555544321 111
Q ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 346 ----VSYNTLIFAYCKEGKMQESKSLLYEMMGN-GIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDY 420 (609)
Q Consensus 346 ----~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 420 (609)
..+|.-...+.+.|+++.|.+-+-.|.-+ ....|++|.+.+.-. ...+++.+..+-+.-+.+.++ -...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 11222233345677777777777666422 223466666554322 223445455555555555543 45677777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 421 LIVALCQDNRPFAATSLLERIGQDGY-VPSLEIYNELMESLCKCDSVADALLLKDEM 476 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
++-.||++.-++-|..++-+-....+ -.+...|+.|=....-.-..++|++-++.+
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 77788887777777776655321111 123334443322222334555555544443
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=2.5e-07 Score=78.68 Aligned_cols=199 Identities=15% Similarity=0.014 Sum_probs=125.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVS 207 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 207 (609)
...-+.-.|...|++..|.+-++++++. .|.....+..+.. .|.+.|..+.|.+.|++++... +.+-.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~---DPs~~~a~~~~A~-------~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdV 105 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH---DPSYYLAHLVRAH-------YYQKLGENDLADESYRKALSLA-PNNGDV 105 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHH-------HHHHcCChhhHHHHHHHHHhcC-CCccch
Confidence 3444555666667777777777777654 4455555555555 6667777777777777776654 445556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 037911 208 CNFLLNGLLKLNCIDQCWQVYEEMGRIG-ICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYC 286 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 286 (609)
.|.....+|..|++++|...|++....- ..--..+|..+.-+..+.|+++.|.+.|++..+.. +-...+.-.+.....
T Consensus 106 LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~ 184 (250)
T COG3063 106 LNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHY 184 (250)
T ss_pred hhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHH
Confidence 6666667777777777777777665531 11124566666666667777777777777766653 223445556666677
Q ss_pred hcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 287 KKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 287 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
+.|++-.|...++.....+. ++....-..|+..-..|+.+.+.++=.++.+.
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred hcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777777777766554 56666666666666777776666655555543
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.2e-06 Score=81.00 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=49.5
Q ss_pred cCCChhHHHHHHHHhhhcCCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhh
Q 037911 102 CQSDSVSALTFFNWVKNDLEIKP-TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLIS 171 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (609)
..++++.|++==...++ ..| -+..|.....++.-.|+|++|+.-|.+-++. .|.+...+..+..
T Consensus 48 ~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~---d~~n~~L~~gl~~ 112 (539)
T KOG0548|consen 48 SLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEK---DPSNKQLKTGLAQ 112 (539)
T ss_pred HHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhc---CCchHHHHHhHHH
Confidence 34677777765544443 455 5789999999999999999999999999865 5677777777776
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.6e-05 Score=81.68 Aligned_cols=384 Identities=15% Similarity=0.161 Sum_probs=234.1
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
|++.-...+.++...+-..+-++++++++-.......+...-+.++- -+-.-+.....+..+++...+ .|+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiL--------tAikad~trVm~YI~rLdnyD-a~~ 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLIL--------TAIKADRTRVMEYINRLDNYD-APD 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHH--------HHhhcChHHHHHHHHHhccCC-chh
Confidence 45555555666666666666666666665432222222222233322 112223333444444443322 122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
+.......+-+++|..+|++.. .+....+.|+. .-+.++.|.++-++.. .+..|..+..+
T Consensus 1054 ------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakA 1113 (1666)
T KOG0985|consen 1054 ------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKA 1113 (1666)
T ss_pred ------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHH
Confidence 2233445556677777777642 34445555544 3356666666665543 45678888888
Q ss_pred HHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 285 YCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQES 364 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 364 (609)
-.+.|.+.+|++-|-+.. |...|..+++...+.|.+++-.+++....+..-.|... ..||-+|++.++..+.
T Consensus 1114 QL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1114 QLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTEL 1185 (1666)
T ss_pred HHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHH
Confidence 888888888887775432 66788889999999999999888887777765555544 4678888888887776
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037911 365 KSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
.+++ ..||......+.+-|...+.++.|.-+|.. ...|..+...+...|++..|...-++.
T Consensus 1186 E~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1186 EEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA--- 1246 (1666)
T ss_pred HHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 6554 347777788888888888888888877754 345777888888888877777655443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCC-CCHHHH
Q 037911 445 GYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGML-PDSQIC 523 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~ 523 (609)
.+..+|..+-.+|...+.+.-|. |-..++.....-...++..|...|-+++.+.+++... |+. .....|
T Consensus 1247 ---ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmf 1316 (1666)
T KOG0985|consen 1247 ---NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMF 1316 (1666)
T ss_pred ---cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHH
Confidence 35677888888887766655442 3333333445556777888888888888888887766 332 233445
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCC-------ChhcHHHHHHHHHhcCCHHHHH
Q 037911 524 RVLINGYCMEKDVNKAEALLGFFAKKFQIY-------DTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
+-|.-.|.+- ++++..+-++.....-..| ....|+.++-.|.+-..++.|.
T Consensus 1317 TELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1317 TELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 5555555543 3344444443333211111 1234666666666666666553
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2.1e-05 Score=79.07 Aligned_cols=392 Identities=14% Similarity=0.172 Sum_probs=212.1
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhh--------CCCCCcHHhHHHHhhcccc
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELV--------KDCPHSVDVFQDLISCTED 175 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~ 175 (609)
|+-+.|.+-.+... +-..|..|++.+.+.++.+-|.-.+-.|.... ...+.....-..+
T Consensus 742 G~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAv------ 808 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAV------ 808 (1416)
T ss_pred ccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHH------
Confidence 56666665554443 56789999999999888888776665553220 1112122222222
Q ss_pred chhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 037911 176 CNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD 255 (609)
Q Consensus 176 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 255 (609)
.-...|.+++|+.+|++-.+. ..|=..|-..|.+++|.++-+.--+. . =..||..-..-+-..++
T Consensus 809 ---LAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 809 ---LAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred ---HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhcc
Confidence 346889999999999988763 34445666789999999887653332 1 23455556666667788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 256 VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHR 335 (609)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 335 (609)
.+.|++.|++.... --..+..|. .++.....+.+.+. |...|.=...-+-..|+.|.|+.+|..
T Consensus 874 i~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred HHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHH
Confidence 88888888764311 111111111 11222222222222 233344344444566777777777776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 037911 336 MVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISR 415 (609)
Q Consensus 336 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 415 (609)
.+. |-+++...|-.|+.++|-++-++- -|...+..+.+.|-..|++.+|...|.+.+.
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa------- 995 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA------- 995 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------
Confidence 553 455666777778888877766543 2556677777888888888888877766543
Q ss_pred HHHHHHHHHHHhcC---------------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----
Q 037911 416 DIYDYLIVALCQDN---------------RPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDE----- 475 (609)
Q Consensus 416 ~~~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----- 475 (609)
+...|+.|-.++ +.-.|.+.|++. |. -+...+..|-+.|.+.+|+++--+
T Consensus 996 --fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 996 --FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred --HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence 222222222221 112222333332 10 122234456667777776654211
Q ss_pred ---HH--HCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 037911 476 ---MV--DRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKF 550 (609)
Q Consensus 476 ---~~--~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (609)
++ +.....|+...+.-.+-++...++++|..++-...+. ...+.. |+..++.-..++-+.|.-..
T Consensus 1066 aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alql-C~~~nv~vtee~aE~mTp~K 1135 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQL-CKNRNVRVTEEFAELMTPTK 1135 (1416)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHH-HhcCCCchhHHHHHhcCcCc
Confidence 11 1222345666666666677777777777776655431 112222 22223333333333332111
Q ss_pred -CCCCh----hcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 551 -QIYDT----ESYNAVFNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 551 -~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 581 (609)
..|+. .....+...|.++|.+..|-+-|.+.
T Consensus 1136 d~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1136 DDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 12222 23455556666666666665555444
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.99 E-value=4.4e-06 Score=82.61 Aligned_cols=168 Identities=18% Similarity=0.135 Sum_probs=98.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 037911 352 IFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRP 431 (609)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 431 (609)
+.+......|.+|+.+++.+.... ....-|..+.+.|...|+++.|.++|.+. ..++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 444455667777777777766552 22334566667777777777777777543 2345566777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHH
Q 037911 432 FAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEM 511 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 511 (609)
++|.++-++.. |.......|-+-..-+-++|++.+|+++|-.+.+ |+. .|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHh
Confidence 77777665543 2233445555555556667777777766644332 432 345566666666666666554
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 512 LESGMLPDSQICRVLINGYCMEKDVNKAEALLG 544 (609)
Q Consensus 512 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (609)
.. ..-..|...+..-+-..|++..|..-|-
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 21 1112344455556666666666666553
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.97 E-value=4.6e-06 Score=85.43 Aligned_cols=457 Identities=11% Similarity=-0.009 Sum_probs=239.5
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHH--H
Q 037911 92 AHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQD--L 169 (609)
Q Consensus 92 ~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~--l 169 (609)
+-..++.+.+..-|...|.+.|+.+..- ..-+..++....+.|++..+++.|..+.-..-+. .+-....++- .
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~~~qk---a~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLRAAQK---APAFACKENWVQR 568 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh---chHHHHHhhhhhc
Confidence 3445566655555777788888877641 2336777788888888888888888774333322 1111111111 2
Q ss_pred hhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHH
Q 037911 170 ISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT-HTFNILTH 248 (609)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~ 248 (609)
.- .|...++...|+.-|+...+.. +.|...|..++.+|.+.|++..|.++|.+.... .|+. ..---...
T Consensus 569 G~-------yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~ 638 (1238)
T KOG1127|consen 569 GP-------YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAV 638 (1238)
T ss_pred cc-------cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHH
Confidence 22 6778888899999998888765 567788888999999999999999999887763 3432 22222334
Q ss_pred HHHHcCChHHHHHHHHHHHHcC------CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhh-------CCccCCHhhHHH
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEG------FDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYR-------RNVLPDLVTYTT 315 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~p~~~~~~~ 315 (609)
..|..|.+.+|+..+..+.... ..--..++-.+...+.-.|-..+|.+.+++-++ ....-+...|-.
T Consensus 639 ~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~ 718 (1238)
T KOG1127|consen 639 MECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIV 718 (1238)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4667788888888888776531 111122333333333334444444444444332 111112222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh---H---HHHHHHHHHHHCCCccCHHHHHHHHHH
Q 037911 316 LMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKM---Q---ESKSLLYEMMGNGIYPDTFTCQIIVQG 389 (609)
Q Consensus 316 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (609)
+- .|..+|-... .. .|+......+..-.-..+.. + -+.+.+-.-++. .-+..+|..++..
T Consensus 719 as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 719 AS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGIN 784 (1238)
T ss_pred Hh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHH
Confidence 22 2223333322 11 22322222222212222221 1 111111111111 1123344444443
Q ss_pred HHc------c--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037911 390 YGK------E--GRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLC 461 (609)
Q Consensus 390 ~~~------~--~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
|.+ . .+...|+..+.+..+.. .-+..+++.+.-. ...|++.-+...|-+-.... +....+|..+.-.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEE
Confidence 332 1 12246777777766553 2244455544433 44455555554444433222 345567777777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHH--H--CCCCCCHHHHHHHHHHHHccCCHH
Q 037911 462 KCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEML--E--SGMLPDSQICRVLINGYCMEKDVN 537 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~--~~~~p~~~~~~~l~~~~~~~g~~~ 537 (609)
+..+++.|...|.......+ .|...|-.........|+.-++..+|..-. . .|-.++...|-.........|+.+
T Consensus 862 ~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 88888888888888776542 344555555444556677777777776521 1 132344443333333334455544
Q ss_pred HHHHH----------HHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 538 KAEAL----------LGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 538 ~A~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
+-+.. ++..... .+-+...|...+...-+.+.+.+|.++..+..
T Consensus 941 ~~I~t~~ki~sAs~al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 941 ESINTARKISSASLALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHhhhhhhhHHHHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 43322 2233322 12233566666666667777777776666554
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=1e-05 Score=90.43 Aligned_cols=336 Identities=11% Similarity=0.012 Sum_probs=182.5
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--C----CCC--HHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIG--I----CPN--THTFNILTHVF 250 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~----~~~--~~~~~~l~~~~ 250 (609)
.....|+++.+..+++.+.......+..........+...|++++|...+......- . .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 455667777766666654211111122222334444556778888887777664320 0 011 11222233445
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHhHHHHHHHHHhhC----Cc-cCCHhhHHHHHHHHH
Q 037911 251 CKNGDVDKVNGFLEKIEEEGFDPD----LVTYNTLISSYCKKGRLNDAFYLYRIMYRR----NV-LPDLVTYTTLMNGLC 321 (609)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~~ll~~~~ 321 (609)
...|++++|...+++....-...+ ....+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 567888888888877665311111 123455556667788888888887777642 11 111234445566677
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCcc--CHHHHHHHHHHH
Q 037911 322 KEGKVREAHQLFHRMVHR----GLS--P-DIVSYNTLIFAYCKEGKMQESKSLLYEMMGN--GIYP--DTFTCQIIVQGY 390 (609)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~~~l~~~~ 390 (609)
..|++++|...+++.... |.. + ....+..+...+...|++++|...+++.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 788888888877776542 211 1 1223444555566678888888877776542 1111 123344455566
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCC-HHHH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 037911 391 GKEGRLLSALNLVVELQRFGVSIS-RDIY-----DYLIVALCQDNRPFAATSLLERIGQDGYVPS---LEIYNELMESLC 461 (609)
Q Consensus 391 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 461 (609)
...|++++|...+........... ...+ ...+..+...|+.+.+...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 777888888887777644210000 0000 1112334456676777776655432211111 111344566677
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhcCCCHhHHHHHHHHHHHC
Q 037911 462 KCDSVADALLLKDEMVDR----NIKPS-LSTYRALICCFCGIGRSGEAVSLMDEMLES 514 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (609)
..|+.++|...+++.... |...+ ..+...+..++.+.|+.++|...+.++.+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888888877776542 22121 234455556677788888888888887764
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=6.9e-06 Score=91.73 Aligned_cols=337 Identities=11% Similarity=0.010 Sum_probs=209.9
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCc------cCCH--hhHHHHHHHH
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNV------LPDL--VTYTTLMNGL 320 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~p~~--~~~~~ll~~~ 320 (609)
.....|+++.+...++.+.......+..........+...|++++|...+....+.-- .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653221111222333444556678999999999887754210 1111 1222233455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-ccCHHHHHHHHHHHH
Q 037911 321 CKEGKVREAHQLFHRMVHRGLSPDI----VSYNTLIFAYCKEGKMQESKSLLYEMMGN----GI-YPDTFTCQIIVQGYG 391 (609)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~ 391 (609)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988763111121 23455666677899999999999887643 11 111234556667788
Q ss_pred ccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHH
Q 037911 392 KEGRLLSALNLVVELQRF----GVS--I-SRDIYDYLIVALCQDNRPFAATSLLERIGQD--GYVP--SLEIYNELMESL 460 (609)
Q Consensus 392 ~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~ 460 (609)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999988876542 211 1 2233445566677789999999888776321 1112 234455566778
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 037911 461 CKCDSVADALLLKDEMVDRNI-KPSLSTY-----RALICCFCGIGRSGEAVSLMDEMLESGMLPD---SQICRVLINGYC 531 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 531 (609)
...|++++|...+.+...... ......+ ...+..+...|+.+.|..++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 889999999999888754210 0111111 1122344557899999999877654221111 112456777888
Q ss_pred ccCCHHHHHHHHHHHHHcC----CCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037911 532 MEKDVNKAEALLGFFAKKF----QIYD-TESYNAVFNMFAEDGDLSKLMELQKRFLRLG 585 (609)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 585 (609)
..|+.++|...++...... ...+ ..+...+..++...|+.++|.+.+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999998877542 1211 2456667788899999999999999998754
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=6.2e-06 Score=72.88 Aligned_cols=388 Identities=14% Similarity=0.117 Sum_probs=238.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHHcCChH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNI-LTHVFCKNGDVD 257 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~g~~~ 257 (609)
.+.+..++++|++++..-.+.. +.+......|..+|-...++..|-+.|+++... .|...-|.. -...+.+.+.+.
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccH
Confidence 4578889999999998887764 447777888888999999999999999999874 566665543 345677889999
Q ss_pred HHHHHHHHHHHcCCCCCHHh--HHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 258 KVNGFLEKIEEEGFDPDLVT--YNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHR 335 (609)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 335 (609)
.|+.+...|.+. ++... ...-.......+++..+..++++....| +..+.+.......+.|+++.|.+-|+.
T Consensus 96 DALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHH
Confidence 999999988753 22221 2212223446788888998888876433 445555555666799999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc-------------C------HH---------HHHHHH
Q 037911 336 MVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYP-------------D------TF---------TCQIIV 387 (609)
Q Consensus 336 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~------~~---------~~~~l~ 387 (609)
..+-+---....|+..+ +..+.|+.+.|++...+++++|++- | .. .+|.-.
T Consensus 170 AlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 98864333455676554 4557899999999999998876531 1 11 122222
Q ss_pred HHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037911 388 QGYGKEGRLLSALNLVVELQRF-GVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSV 466 (609)
Q Consensus 388 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (609)
..+.+.++++.|.+.+.+|.-+ .-..|+.|...+.-.= ..+++.+..+-+.-+...+. -...||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 3356788899998888887433 2244666665543322 23445555555555544443 3457788888899999989
Q ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHh-cCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---HHHHHH
Q 037911 467 ADALLLKDEMVDRNIK-PSLSTYRALICCFC-GIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKD---VNKAEA 541 (609)
Q Consensus 467 ~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~ 541 (609)
+-|-.++.+-.....+ .+...|+ +++++. ..-..++|.+-++.+... +.-.......-+.--...++ +..|.+
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~dd~a~R~ai~ 404 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRDDEAIRKAVN 404 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 8888877543221110 1223333 333332 345566666655554321 00000000011111111111 112222
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 542 LLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
-+++..+. -..+..+-.+.|++..++..+.++|..-.+.
T Consensus 405 ~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 405 EYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 22332222 1122344455677888999999999887743
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=6.7e-06 Score=81.38 Aligned_cols=389 Identities=13% Similarity=0.083 Sum_probs=212.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037911 130 CLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCN 209 (609)
Q Consensus 130 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (609)
...++.+...|+-++|.++ .. .+.+.+.. |. .|.+.|..-.|......=.+ +..|.....
T Consensus 593 ~sy~q~l~dt~qd~ka~el----k~------sdgd~laa-iq-------lyika~~p~~a~~~a~n~~~--l~~de~il~ 652 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAEL----KE------SDGDGLAA-IQ-------LYIKAGKPAKAARAALNDEE--LLADEEILE 652 (1636)
T ss_pred HHHHHHHHhcCchhhhhhh----cc------ccCccHHH-HH-------HHHHcCCchHHHHhhcCHHH--hhccHHHHH
Confidence 3445666777777766543 11 12233333 33 68888888777665432221 234555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC----------------------CCCCHHHH-HHHHHHHHHcCChHHHHHHHHHH
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIG----------------------ICPNTHTF-NILTHVFCKNGDVDKVNGFLEKI 266 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~----------------------~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~ 266 (609)
.+..++.+..-+++|-.+|+++.... ++..+.+. .....-+...|+++.|+..|-+.
T Consensus 653 ~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 653 HIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 56666666555666666665553210 00000000 00011111222333332222211
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 037911 267 EEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIV 346 (609)
Q Consensus 267 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 346 (609)
. ..-..+.+......|.+|+.+++.+.+... -..-|..+...|+..|+++.|.++|.+.-
T Consensus 733 ~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~--------- 792 (1636)
T KOG3616|consen 733 N---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD--------- 792 (1636)
T ss_pred h---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------
Confidence 1 112233455566778888888887776533 33456777888899999999998887542
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037911 347 SYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALC 426 (609)
Q Consensus 347 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 426 (609)
.++-.|.+|.+.|+|++|.++-.+.. |.......|..-..-+-+.|++.+|.++|-.+.. |+ ..|.+|-
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmyd 861 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYD 861 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHH
Confidence 34567888999999999988876654 4444556676667777788888888877744332 22 3567778
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 037911 427 QDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVS 506 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 506 (609)
+.|..++.+++.++..... -..|...+..-+-..|++..|+.-|-+..+ |..-+..|...+.+++|.+
T Consensus 862 k~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayr 929 (1636)
T KOG3616|consen 862 KHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYR 929 (1636)
T ss_pred hhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHH
Confidence 8888777777776653221 123444556666677777777776654432 3333444444444444444
Q ss_pred HHHHHH------------HCCCCCCH--------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 037911 507 LMDEML------------ESGMLPDS--------QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFA 566 (609)
Q Consensus 507 ~~~~~~------------~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 566 (609)
+-+.-- ...+--+. -.+..-++..+..+.++-|.++-+...+.. -..+.-.+..-+.
T Consensus 930 iaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~le 1006 (1636)
T KOG3616|consen 930 IAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLE 1006 (1636)
T ss_pred HHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhh
Confidence 322110 00000010 012233344455566666666655554331 1223344555567
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 037911 567 EDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~ 584 (609)
..|++++|.+.|-+..+.
T Consensus 1007 degk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 1007 DEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hccchhhhhHhhHHHhhc
Confidence 788888888887776643
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=2.5e-05 Score=78.51 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=87.3
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHh-------hCCCCCcHHhHHH
Q 037911 96 SRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVEL-------VKDCPHSVDVFQD 168 (609)
Q Consensus 96 ~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~ 168 (609)
+.-+.+.+|.++.|+++-+. ...-|-..+|+..+.-+...++.+.|++.|++.-.. -...|+....|..
T Consensus 832 lNKlyQs~g~w~eA~eiAE~----~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~ 907 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAET----KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVR 907 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhh----ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHH
Confidence 33455566677766655432 222345567777777788888888888888764211 0111222221111
Q ss_pred Hhhccccchh---HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 037911 169 LISCTEDCNW---AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNI 245 (609)
Q Consensus 169 l~~~~~~~~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 245 (609)
-.+-..-..| ..-..|+.+.|+.+|..+.+ |-++.+..|-.|+.++|-++-++- -|......
T Consensus 908 ~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYh 972 (1416)
T KOG3617|consen 908 RKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYH 972 (1416)
T ss_pred hccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHH
Confidence 1000000011 23356677777777766553 566667777777777777776652 34555556
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 037911 246 LTHVFCKNGDVDKVNGFLEKIE 267 (609)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~~~ 267 (609)
|.+.|-..|++.+|+.+|.+..
T Consensus 973 laR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHH
Confidence 7777777788877777776653
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.88 E-value=2.3e-05 Score=70.75 Aligned_cols=317 Identities=12% Similarity=0.075 Sum_probs=160.1
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+..-..-+...+...|++.+|+.-|..+++. .|.+-.++..-.. .|...|+-.-|+.-+.+.++. +||
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~---dp~~Y~aifrRaT-------~yLAmGksk~al~Dl~rVlel--KpD 104 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG---DPNNYQAIFRRAT-------VYLAMGKSKAALQDLSRVLEL--KPD 104 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC---CchhHHHHHHHHH-------HHhhhcCCccchhhHHHHHhc--Ccc
Confidence 4455556677777788888888888877753 3333222222222 677888888888888888774 455
Q ss_pred HHHH-HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 037911 205 IVSC-NFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283 (609)
Q Consensus 205 ~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 283 (609)
-..- -.-...+.+.|.+++|..=|+.+.+.. |+..+- .++.+-+..+.+ .......+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~-------------~eaqskl~~~~e------~~~l~~ql~ 163 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV-------------LEAQSKLALIQE------HWVLVQQLK 163 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchh-------------HHHHHHHHhHHH------HHHHHHHHH
Confidence 4322 223346677888888888888877643 322111 011111111000 011111222
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 284 SYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQE 363 (609)
Q Consensus 284 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 363 (609)
.+...|+...|+.....+++..+ .|...|..-..+|...|++..|+.-++...+.. .-+...+.-+-..+...|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHH
Confidence 34445666666666666655432 255555555566666666666655555544432 1233344444455555666666
Q ss_pred HHHHHHHHHHCCCccCHHHHHHH-------------HHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHh
Q 037911 364 SKSLLYEMMGNGIYPDTFTCQII-------------VQGYGKEGRLLSALNLVVELQRFGVSISR---DIYDYLIVALCQ 427 (609)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~ 427 (609)
++...++-++. .||...+-.. +......++|.++++-.+...+....... ..+..+-.++..
T Consensus 242 sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 242 SLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccc
Confidence 66666555543 3333221110 11123344555555555555444322111 122233334444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 428 DNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDR 479 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 479 (609)
.+++.+|++...+..... +.|..++-.-..+|.-...+++|+.-|+...+.
T Consensus 320 d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 555555555555554432 223555555555555555556666555555554
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.87 E-value=1.5e-05 Score=81.87 Aligned_cols=408 Identities=11% Similarity=0.010 Sum_probs=208.3
Q ss_pred hhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 037911 142 FSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCI 221 (609)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 221 (609)
...|...|-..++. .+.-...|..+.. .|....+...|.+.|+++.+.+ ..+...+..+.+.|++..++
T Consensus 474 ~~~al~ali~alrl---d~~~apaf~~LG~-------iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 474 SALALHALIRALRL---DVSLAPAFAFLGQ-------IYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHHHHHHHHHhc---ccchhHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccH
Confidence 34444444444433 2333445555555 5666667777777787777765 45666777777778888888
Q ss_pred HHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHH
Q 037911 222 DQCWQVYEEMGRIG-ICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRI 300 (609)
Q Consensus 222 ~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (609)
+.|..+.-..-+.. ...-..-|....-.|.+.++...|+.-|+...... +.|...|..++.+|...|++..|+++|.+
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 87777743332211 00011222223334566677777777777776653 33566777777888888888888888877
Q ss_pred HhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--
Q 037911 301 MYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR------GLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMM-- 372 (609)
Q Consensus 301 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 372 (609)
.....+. +...---.....|..|.+.+|...+..+... +..--..++-.+...+.-.|=..+|.+++++-+
T Consensus 622 As~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 622 ASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred hHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 7654322 1121112233446677777777777766542 111112223222222333333333333333322
Q ss_pred -----HCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--HH----HHHHHHHH
Q 037911 373 -----GNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRP--FA----ATSLLERI 441 (609)
Q Consensus 373 -----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~----a~~~~~~~ 441 (609)
.+....+...|-.+.+ |..+|.... .. .|+......+..-+...+.. .+ +.+.+-.
T Consensus 701 f~~~l~h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~- 767 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA- 767 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH-
Confidence 2211112222222222 222222222 11 12222222222112222211 01 0010000
Q ss_pred HhCCCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 037911 442 GQDGYVPSLEIYNELMESLCK--------CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (609)
......+..+|..++..|.+ ..+...|+..+...++.. ..+..+|+.|.-. ...|++.-|...|-+...
T Consensus 768 -hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 768 -HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred -HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 00111123334444433333 123345677777666542 1456667766654 666788878777777665
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 514 SGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKR 580 (609)
Q Consensus 514 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (609)
.. +....+|..+.-.+.+..+++-|...|....... +.|...|--........|+.-++..+|.-
T Consensus 845 se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 845 SE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 42 4456677778888888888888888888777442 23445555555555567777777777655
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=2.5e-07 Score=86.02 Aligned_cols=248 Identities=17% Similarity=0.152 Sum_probs=120.7
Q ss_pred HhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 286 CKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESK 365 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 365 (609)
.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 33456666554444 211111112333444555666666655432 2332222 444444443333332223334444
Q ss_pred HHHHHHHHCCCcc-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037911 366 SLLYEMMGNGIYP-DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 366 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
.-+++........ +..........+...|++++|++++... .+.......+.++.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4443333222221 2222222233455566777776666432 24455555666666667767776666666543
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH
Q 037911 445 GYVPSLEIYNELMESLCK----CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDS 520 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 520 (609)
. .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.++++++.+.+ +-+.
T Consensus 161 ~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 161 D--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp S--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred C--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 2 22 233333333332 23567777777776554 34566666777777777777777777777766543 3345
Q ss_pred HHHHHHHHHHHccCCH-HHHHHHHHHHHHc
Q 037911 521 QICRVLINGYCMEKDV-NKAEALLGFFAKK 549 (609)
Q Consensus 521 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 549 (609)
.++..++.+....|+. +.+.+++.++...
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5555666666666665 5566666666654
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.84 E-value=2.7e-05 Score=70.39 Aligned_cols=197 Identities=13% Similarity=0.091 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHH---HHHHHhcCCHhHHHHHHHHHhhCCccCCHhh-HH
Q 037911 239 NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTL---ISSYCKKGRLNDAFYLYRIMYRRNVLPDLVT-YT 314 (609)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~ 314 (609)
++.-.--+...+...|++..|+.-|...++. |+..|.++ ...|...|+...|+.-+...++. +||-.. --
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444455677777888888888888887764 33344443 45677788888888888888775 455322 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HH------------HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH
Q 037911 315 TLMNGLCKEGKVREAHQLFHRMVHRGLSPDI--VS------------YNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT 380 (609)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (609)
.-...+.+.|.++.|..-|+...+.....+. .. ....+..+...|+...|+.....+++.. +-|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 2334667888888888888888876321110 11 1122333445566666666666666541 2244
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037911 381 FTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQ 443 (609)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
..+..-..+|...|++..|+.=++...+..- -+..++..+-..+...|+.+.++..+++..+
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5555556666666666666665555554432 2444455555566666666666666665544
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.83 E-value=0.00014 Score=70.04 Aligned_cols=149 Identities=14% Similarity=0.182 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHhHHHHHHHHH
Q 037911 433 AATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKP-SLSTYRALICCFCGIGRSGEAVSLMDEM 511 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 511 (609)
.....+.++...-...-..+|-.+++...+..-++.|..+|.+..+.+..+ ++...++++..+| .++..-|.++|+--
T Consensus 349 ~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLG 427 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELG 427 (656)
T ss_pred hhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHH
Confidence 333444554322222233456777777777788888888998888776666 6667777777665 47778888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh--hcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 512 LESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDT--ESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 512 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.+. ..-++......++.+...++-..|..+|+.....+..++. ..|..++.-=..-|+...+.++-+++..
T Consensus 428 Lkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 428 LKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 653 3344555567778888888888888899888877554443 6788888888888888888888877764
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=0.0003 Score=72.72 Aligned_cols=231 Identities=15% Similarity=0.191 Sum_probs=136.6
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHh
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKV 183 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 183 (609)
-|+...+++.+.+-+ +... .++.+...++-+++|..+|...- .+......++. .-
T Consensus 1034 ad~trVm~YI~rLdn---yDa~-----~ia~iai~~~LyEEAF~ifkkf~-------~n~~A~~VLie----------~i 1088 (1666)
T KOG0985|consen 1034 ADRTRVMEYINRLDN---YDAP-----DIAEIAIENQLYEEAFAIFKKFD-------MNVSAIQVLIE----------NI 1088 (1666)
T ss_pred cChHHHHHHHHHhcc---CCch-----hHHHHHhhhhHHHHHHHHHHHhc-------ccHHHHHHHHH----------Hh
Confidence 466666766665542 1111 13445556666777777766543 23445555554 45
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 037911 184 GLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFL 263 (609)
Q Consensus 184 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 263 (609)
+..+.|.+.-++.- .+..|..+..+-.+.|.+.+|++-|-+. .|...|.-++....+.|.+++...++
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 56666666655543 3346777777777777777777765442 45666777777777777777777777
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037911 264 EKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSP 343 (609)
Q Consensus 264 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 343 (609)
....+..-+|.+ =..||-+|++.+++.+..+++ ..||......+.+-|...|.++.|.-+|...
T Consensus 1157 ~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v------- 1220 (1666)
T KOG0985|consen 1157 LMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV------- 1220 (1666)
T ss_pred HHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-------
Confidence 776666544443 345677777777766554443 1346666666666677777777666665533
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCC
Q 037911 344 DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGR 395 (609)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (609)
..|..|...+...|++..|.+.-++.- +..||..+-.+|...+.
T Consensus 1221 --SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1221 --SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEE 1264 (1666)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhh
Confidence 335556666666666666655443332 34445554444444433
No 105
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=1e-05 Score=76.43 Aligned_cols=204 Identities=10% Similarity=0.078 Sum_probs=119.0
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037911 139 NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG-LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK 217 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 217 (609)
.++.++|+....++++. .|.+..++..-.. .+...| ++++++..++++.+.. +.+..+|+....++.+
T Consensus 50 ~e~serAL~lt~~aI~l---nP~~ytaW~~R~~-------iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 50 DERSPRALDLTADVIRL---NPGNYTVWHFRRL-------CLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred CCCCHHHHHHHHHHHHH---CchhHHHHHHHHH-------HHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 34556677777777665 3344444444333 344555 4677777777777654 4455566655555555
Q ss_pred cCCh--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CC--
Q 037911 218 LNCI--DQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK---GR-- 290 (609)
Q Consensus 218 ~~~~--~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~-- 290 (609)
.|+. +++.++++++.+.. +-|..+|+....++...|+++++++.++++++.+.. |..+|+.....+.+. |.
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 5542 55677776766543 345667777777777777777777777777776533 555666655544443 22
Q ss_pred --HhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037911 291 --LNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE----GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCK 357 (609)
Q Consensus 291 --~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 357 (609)
.++.++...+++...+. |...|+.+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 197 ~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 24566666666665444 666777666666552 33455666666655532 2345556666666654
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.80 E-value=0.00018 Score=69.27 Aligned_cols=435 Identities=11% Similarity=0.073 Sum_probs=251.9
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
+-|..+|..|++-+..+ -+++++..+++++. ..|.++.++...++ .-.+..+++....+|.+.+.. .
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~---~FP~s~r~W~~yi~-------~El~skdfe~VEkLF~RCLvk--v 83 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN---VFPSSPRAWKLYIE-------RELASKDFESVEKLFSRCLVK--V 83 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc---cCCCCcHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHH--H
Confidence 34788888888877766 88888888888874 46677777777777 777888888888888887764 3
Q ss_pred CCHHHHHHHHHHHHh-cCChHH----HHHHHHHH-hhCCCCCC-HHHHHHHHHH---------HHHcCChHHHHHHHHHH
Q 037911 203 PSIVSCNFLLNGLLK-LNCIDQ----CWQVYEEM-GRIGICPN-THTFNILTHV---------FCKNGDVDKVNGFLEKI 266 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~-~~~~~~----a~~~~~~m-~~~~~~~~-~~~~~~l~~~---------~~~~g~~~~a~~~~~~~ 266 (609)
.++..|...+.---+ .|+... ..+.|+-. .+.|..+- ...|+.-+.. |....+++...++++++
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 556677766654433 222222 22223322 33343322 1223322222 33445667777777777
Q ss_pred HHcCCCCCHHhHH------HHHHH-------HHhcCCHhHHHHHHHHHhh--CCccCCHhh---------------HHHH
Q 037911 267 EEEGFDPDLVTYN------TLISS-------YCKKGRLNDAFYLYRIMYR--RNVLPDLVT---------------YTTL 316 (609)
Q Consensus 267 ~~~~~~~~~~~~~------~li~~-------~~~~g~~~~a~~~~~~~~~--~~~~p~~~~---------------~~~l 316 (609)
....+.-=...|+ .-|+. --+...+..|.+++++... +|...+..+ |..+
T Consensus 164 l~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 164 LVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred hcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHH
Confidence 6542110011121 11111 1123346677777777653 332211111 3333
Q ss_pred HHHHHhcCC--------HHHHHHHHHHHH-HCCCCCCHHHHH-----HHHHHHHHcCC-------hHHHHHHHHHHHHCC
Q 037911 317 MNGLCKEGK--------VREAHQLFHRMV-HRGLSPDIVSYN-----TLIFAYCKEGK-------MQESKSLLYEMMGNG 375 (609)
Q Consensus 317 l~~~~~~~~--------~~~a~~~~~~m~-~~g~~p~~~~~~-----~li~~~~~~g~-------~~~A~~~~~~~~~~~ 375 (609)
|.---.++- -....-++++.. -.+..|+..... ..-+.+...|+ .+++..+++..++.-
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 322111110 011122222222 223344432211 11122333444 345556666555432
Q ss_pred CccCHHHHHHHHHHHH---ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHH
Q 037911 376 IYPDTFTCQIIVQGYG---KEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVP-SLE 451 (609)
Q Consensus 376 ~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 451 (609)
..-+..+|..+.+.-- +.++.+...+.++++......--..+|...++.-.+...+..|..+|.+..+.+..+ ++.
T Consensus 324 ~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf 403 (656)
T KOG1914|consen 324 LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF 403 (656)
T ss_pred HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh
Confidence 2223333443333211 112356666777777665433344567778887777777799999999997766666 788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 037911 452 IYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD--SQICRVLING 529 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~ 529 (609)
++++++..||. ++.+-|.++|+--..+ ...++.--...++-+...++-..|..+|++.+..++.|+ ..+|..++..
T Consensus 404 Va~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 404 VAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 89999998886 8899999999876544 213344445677778889999999999999998866655 4689999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCC---CCChhcHHHHHHHHHhcCCHH
Q 037911 530 YCMEKDVNKAEALLGFFAKKFQ---IYDTESYNAVFNMFAEDGDLS 572 (609)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 572 (609)
-..-|+++.+.++-+++..... .+....-..+++.|.-.+.+.
T Consensus 482 ES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 9999999999999887765432 222234455556665555443
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=5.4e-07 Score=83.82 Aligned_cols=254 Identities=14% Similarity=0.042 Sum_probs=168.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHH
Q 037911 319 GLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLS 398 (609)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (609)
-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++... -.|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3445688888776555 222211223344556778888889877544 333333 36677777666666655566677
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 399 ALNLVVELQRFGVSIS-RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMV 477 (609)
Q Consensus 399 A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 477 (609)
++.-+++........+ .........++...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7666665544433322 333333345666789999998888653 467778888999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHH----hcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 037911 478 DRNIKPSLSTYRALICCF----CGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIY 553 (609)
Q Consensus 478 ~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 553 (609)
+.+ .|.. ...+..++ ...+.+.+|..+|+++.+ ...+++.+++.+..++...|++++|.+++.+..... +.
T Consensus 159 ~~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 159 QID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp CCS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred hcC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 753 4543 33344333 234579999999999876 457889999999999999999999999999988653 44
Q ss_pred ChhcHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCh
Q 037911 554 DTESYNAVFNMFAEDGDL-SKLMELQKRFLRLGFAPNN 590 (609)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~ 590 (609)
++.+...++.+....|+. +.+.+++.++... .|+.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 567777788888888888 6677888888754 5554
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.2e-06 Score=82.77 Aligned_cols=251 Identities=14% Similarity=0.055 Sum_probs=168.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+.+.|++.+|.-.|+..++.+ |-+..+|-.|...-..+++-..|+..+++..+.. +-|......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4678888888888888888765 5677888888888888888888888888887753 3456677777778888888888
Q ss_pred HHHHHHHHHHcCCC--------CCHHhHHHHHHHHHhcCCHhHHHHHHHHHh-hCCccCCHhhHHHHHHHHHhcCCHHHH
Q 037911 259 VNGFLEKIEEEGFD--------PDLVTYNTLISSYCKKGRLNDAFYLYRIMY-RRNVLPDLVTYTTLMNGLCKEGKVREA 329 (609)
Q Consensus 259 a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~ll~~~~~~~~~~~a 329 (609)
|...++..+....+ ++...-+. ..+.....+....++|-++. ..+..+|...+..|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88888877654210 00000000 11222233444555555554 344446777777788788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH-HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 330 HQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT-FTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 330 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
...|+..+... +-|...||.|...++...+.++|+.-|.+.++. .|+. .....|.-+|...|.+++|.+.|-....
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88888888753 336678888888888888888888888888865 5553 4455666678888888888887765432
Q ss_pred C---------CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037911 409 F---------GVSISRDIYDYLIVALCQDNRPFAATS 436 (609)
Q Consensus 409 ~---------~~~~~~~~~~~ll~~~~~~~~~~~a~~ 436 (609)
. ...++..+|.+|=.++.-.++.+-+..
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 122345566666666666666553443
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=3.2e-06 Score=77.54 Aligned_cols=190 Identities=13% Similarity=0.055 Sum_probs=119.7
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
......+..++..+...|++++|...+++++...+..+.....+..+.. .|...|++++|+..++++.+....
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~-------~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAY-------AYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH-------HHHhcCCHHHHHHHHHHHHHHCcC
Confidence 3467777888888888888888888888888764333333345555665 788888888888888888774421
Q ss_pred CCH--HHHHHHHHHHHhc--------CChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 037911 203 PSI--VSCNFLLNGLLKL--------NCIDQCWQVYEEMGRIGICPNT-HTFNILTHVFCKNGDVDKVNGFLEKIEEEGF 271 (609)
Q Consensus 203 ~~~--~~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 271 (609)
... .++..+..++... |+.++|.+.|+++.+. .|+. ..+..+.... . ... ..
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~~------~~----- 165 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LRN------RL----- 165 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HHH------HH-----
Confidence 111 2344444455443 6678888888888764 2432 2222221110 0 000 00
Q ss_pred CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCcc-C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 272 DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVL-P-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 272 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
......+...|.+.|++++|+..+++..+.... | ....+..+..++.+.|++++|..+++.+...
T Consensus 166 ---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 ---AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 001124556678888888888888888765321 2 3467778888888888888888888877664
No 110
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=2.7e-05 Score=73.62 Aligned_cols=208 Identities=10% Similarity=0.054 Sum_probs=143.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh-
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN-CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDV- 256 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~- 256 (609)
.+...++.++|+...+++++.. +-+..+|+.-..++...| .+++++..++++.+.. +-+..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 3445667788899999988865 455667777777777777 5789999999888753 34555676665556666653
Q ss_pred -HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc---CC----HHH
Q 037911 257 -DKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE---GK----VRE 328 (609)
Q Consensus 257 -~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~----~~~ 328 (609)
+++..+++++.+.. +-+..+|+....++...|+++++++.++++++.++. |..+|+.....+.+. |. .++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 67788888888775 347788888888888889999999999999987766 667777766555544 22 245
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc
Q 037911 329 AHQLFHRMVHRGLSPDIVSYNTLIFAYCKE----GKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGK 392 (609)
Q Consensus 329 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (609)
......+++... +-|...|+.+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 666666666552 33566777777666652 34456777777766543 2355666777777764
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=5.9e-06 Score=79.92 Aligned_cols=255 Identities=14% Similarity=0.088 Sum_probs=158.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLL 212 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (609)
...+.++|+..+|.-.|+..++. .|...+.+..|.. .....++-..|+..+++..+.. +.|..+.-.|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkq---dP~haeAW~~LG~-------~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLA 360 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQ---DPQHAEAWQKLGI-------TQAENENEQNAISALRRCLELD-PTNLEALMALA 360 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhh---ChHHHHHHHHhhh-------HhhhccchHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 44556677777777777777754 5666777777766 6677777777777777777765 45666777777
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCC-----C---CHHHHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCCCHHhHHHHHH
Q 037911 213 NGLLKLNCIDQCWQVYEEMGRIGIC-----P---NTHTFNILTHVFCKNGDVDKVNGFLEKIE-EEGFDPDLVTYNTLIS 283 (609)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~ 283 (609)
-.|...|.-..|.+.+++-+....+ + +...-.. ..+.....+....++|-++. ..+..+|..+...|.-
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 7777777777777777766432200 0 0000000 01111222334444444443 3343466777777777
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChH
Q 037911 284 SYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDI-VSYNTLIFAYCKEGKMQ 362 (609)
Q Consensus 284 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~ 362 (609)
.|.-.|++++|.+.|+..+...+. |...||-|...++...+.++|+..|++.++. .|+- .+...|.-.|...|.++
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHH
Confidence 777788888888888888776544 6777888888888888888888888888774 5553 34444566677788888
Q ss_pred HHHHHHHHHHHC---------CCccCHHHHHHHHHHHHccCCHHHHHHHH
Q 037911 363 ESKSLLYEMMGN---------GIYPDTFTCQIIVQGYGKEGRLLSALNLV 403 (609)
Q Consensus 363 ~A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 403 (609)
+|.+.|-..+.. +..++...|..|=.++.-.++.|-+.+..
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 888777665421 12223456666656666666666444433
No 112
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.67 E-value=0.00077 Score=69.17 Aligned_cols=451 Identities=14% Similarity=0.047 Sum_probs=242.9
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHH-HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHH
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLI-VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVK 182 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 182 (609)
+++.+|+.-.....+++ |+.....++ +-.+.+.|+.++|..+++..-.. .+.+..+...+.. .|.+
T Consensus 23 ~qfkkal~~~~kllkk~---Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~---~~~D~~tLq~l~~-------~y~d 89 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH---PNALYAKVLKALSLFRLGKGDEALKLLEALYGL---KGTDDLTLQFLQN-------VYRD 89 (932)
T ss_pred HHHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC---CCCchHHHHHHHH-------HHHH
Confidence 57889999888888753 333222211 33457889999999877776543 3346677777776 7899
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-------
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD------- 255 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~------- 255 (609)
.|+.++|+.+|++.... -|+......+..+|.+.+.+.+-.++--+|-+. ++-+.+.|=+++..+...-.
T Consensus 90 ~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccccc
Confidence 99999999999998875 467777777778888888877655554444442 34455565556655544311
Q ss_pred ---hHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCCHhHHHHHHH-HHhhCCccCCHhhHHHHHHHHHhcCCHHHHH
Q 037911 256 ---VDKVNGFLEKIEEEG-FDPDLVTYNTLISSYCKKGRLNDAFYLYR-IMYRRNVLPDLVTYTTLMNGLCKEGKVREAH 330 (609)
Q Consensus 256 ---~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 330 (609)
..-|...++.+.+.+ .--+..-...-...+-..|++++|++++. ...+.-..-+...-+--+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 234556666666554 11122222223345556788888988883 3333333334444455667778888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH----------------HcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHH---H
Q 037911 331 QLFHRMVHRGLSPDIVSYNTLIFAYC----------------KEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGY---G 391 (609)
Q Consensus 331 ~~~~~m~~~g~~p~~~~~~~li~~~~----------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~ 391 (609)
++-.++...|.. | |...+..++ ..+..+...+..++..... ....|-+-+.++ .
T Consensus 247 ~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~ 319 (932)
T KOG2053|consen 247 ELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYK 319 (932)
T ss_pred HHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhc
Confidence 888888887532 2 322222211 1111222222222222211 111122222222 3
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHH---HHHHHHHHHHhcCC-
Q 037911 392 KEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYV--PSLE---IYNELMESLCKCDS- 465 (609)
Q Consensus 392 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~---~~~~l~~~~~~~g~- 465 (609)
.-|+.+++.-.|-+- .|..| .|..=+..|...=..+.-..++......... .+.. .+...+..-.-.|.
T Consensus 320 ~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~ 394 (932)
T KOG2053|consen 320 LIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLY 394 (932)
T ss_pred ccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhcc
Confidence 446666655443221 12121 2222233333333334444455544222111 1111 12222222222332
Q ss_pred ----HHHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHhcCCCHh---HHHHHHHHHHHCCCCCCH
Q 037911 466 ----VADALLLKDEMV---DRN------IKPSLS---------TYRALICCFCGIGRSG---EAVSLMDEMLESGMLPDS 520 (609)
Q Consensus 466 ----~~~A~~~~~~~~---~~~------~~p~~~---------~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~ 520 (609)
-+.-..++.+.. ++| .-|+.. +-+.|++.+.+.++.. +|+-+++.-.... +-|.
T Consensus 395 ~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf 473 (932)
T KOG2053|consen 395 EKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNF 473 (932)
T ss_pred ccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccH
Confidence 233334443332 223 223322 2355666777776654 4555566555432 3345
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 521 QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.+--.++..|+-.|-+..|.++++.+--+.+.-|...|. +...+...|++..+...++...+.
T Consensus 474 ~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf 536 (932)
T KOG2053|consen 474 QTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF 536 (932)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH
Confidence 555677888888888888888888777655544443332 334556678888888888777643
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=4.8e-06 Score=82.66 Aligned_cols=234 Identities=14% Similarity=0.077 Sum_probs=174.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 037911 311 VTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGY 390 (609)
Q Consensus 311 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (609)
..-..+...+...|-...|..+|++.. .|..+|.+|+..|+..+|..+..+..++ +||...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334566777888899999999998765 4667888999999999999998888874 78888888888888
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037911 391 GKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADAL 470 (609)
Q Consensus 391 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
....-+++|.++.+..... .-..+.....+.+++.++.+.++.-.+.+ +....+|-.+..+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777788888888764332 22233333445678888888888775544 446678888888888889999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 471 LLKDEMVDRNIKPS-LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 471 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
+.|....... || ...||.+-.+|.+.++-.+|...+.++.+.+ .-+..+|...+....+-|.+++|.+.+..+...
T Consensus 540 ~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9888877643 54 4679999999999999999999999998876 445667777777888889999999888877654
Q ss_pred CC-CCChhcHHHHHHHHH
Q 037911 550 FQ-IYDTESYNAVFNMFA 566 (609)
Q Consensus 550 ~~-~~~~~~~~~l~~~~~ 566 (609)
.. ..|..+...++....
T Consensus 617 ~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 617 RKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhhcccchhhHHHHHHHH
Confidence 33 224555555554443
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=5.9e-08 Score=56.96 Aligned_cols=29 Identities=31% Similarity=0.636 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 037911 237 CPNTHTFNILTHVFCKNGDVDKVNGFLEK 265 (609)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (609)
.||..||+.||++||+.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.62 E-value=1.9e-05 Score=82.45 Aligned_cols=149 Identities=9% Similarity=0.039 Sum_probs=127.8
Q ss_pred CCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC
Q 037911 121 EIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 121 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 200 (609)
.+.+++..+..|+.+..+.|.+++|..+++.+.+. .|........+.. .+.+.+++++|+..+++..+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~-------~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLR-------GVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHH-------HHHHhccHHHHHHHHHHHhhcC
Confidence 36788999999999999999999999999999976 6777888888887 8999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 037911 201 FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNT 280 (609)
Q Consensus 201 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (609)
+.+....+.+..++.+.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|++..+.. .+....|+.
T Consensus 151 -p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 151 -SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred -CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 5677778888899999999999999999999743 4458899999999999999999999999988762 334455554
Q ss_pred HH
Q 037911 281 LI 282 (609)
Q Consensus 281 li 282 (609)
++
T Consensus 228 ~~ 229 (694)
T PRK15179 228 RL 229 (694)
T ss_pred HH
Confidence 44
No 116
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.61 E-value=0.0011 Score=67.96 Aligned_cols=234 Identities=13% Similarity=0.089 Sum_probs=158.0
Q ss_pred hhHHHHHhhhccCC--ChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHH
Q 037911 60 KIVDLICSSLKKGD--SHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILA 137 (609)
Q Consensus 60 ~~~~~~~~~l~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~ 137 (609)
..++-|+..++..+ .++....+.++.+|..+.+..+.+......|..+.|+..++.... .+ ..|..+...+..+|.
T Consensus 11 rr~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~-~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 11 RRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYG-LK-GTDDLTLQFLQNVYR 88 (932)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc-CC-CCchHHHHHHHHHHH
Confidence 34555666555432 455666677888888877777777777777899999987776653 22 348899999999999
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK 217 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 217 (609)
+.|++++|..+|+.+... .|. ......++. +|++.+++.+-.++--++-+ .++.+...+=+++..+.+
T Consensus 89 d~~~~d~~~~~Ye~~~~~---~P~-eell~~lFm-------ayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQK---YPS-EELLYHLFM-------AYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHhhhhHHHHHHHHHHhh---CCc-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHH
Confidence 999999999999999965 444 666666666 89998888776666555555 234555555566665554
Q ss_pred cCC----------hHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHHcCCCCCHHhHHHHHHHH
Q 037911 218 LNC----------IDQCWQVYEEMGRIG-ICPNTHTFNILTHVFCKNGDVDKVNGFLE-KIEEEGFDPDLVTYNTLISSY 285 (609)
Q Consensus 218 ~~~----------~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~ 285 (609)
... ..-|...++.+.+.+ -.-+..-...-...+...|.+++|.+++. ...+.-..-+...-+--+..+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 211 234666777766543 21222222233344567788999999984 444433333455556677888
Q ss_pred HhcCCHhHHHHHHHHHhhCCcc
Q 037911 286 CKKGRLNDAFYLYRIMYRRNVL 307 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~~~~~~~ 307 (609)
...+++.+..++-.++...|..
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhcChHHHHHHHHHHHHhCCc
Confidence 8899999999999998887653
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=2.1e-05 Score=78.24 Aligned_cols=209 Identities=16% Similarity=0.131 Sum_probs=158.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+...|-...|+.+|+++. .|.-++.+|+..|+.++|..+..+..++ +||...|..+.+.....--+++
T Consensus 407 ll~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHH
Confidence 7888899999999998765 5677888888888888888888877763 6888888888877766666788
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|.++.+....+ +-..+.......++++++.+.|+.-.+.+.- -..+|-.+..+..+.+++..|.+.|.....
T Consensus 476 awElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 476 AWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 88887765432 1122222233478888888888887765432 456777788888888899999998888876
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 037911 339 RGLSP-DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRF 409 (609)
Q Consensus 339 ~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (609)
. .| +...||.+-.+|.+.++-.+|...+.+..+-+ .-+...|...+-...+.|.+++|++.+.++...
T Consensus 548 L--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 548 L--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred c--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 4 44 45778999999999999999999998888776 345566777777778888888888888877553
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=4.6e-05 Score=81.14 Aligned_cols=205 Identities=10% Similarity=0.038 Sum_probs=108.3
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHhhC-CccC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 275 LVTYNTLISSYCKKGRLNDAFYLYRIMYRR-NVLP---DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNT 350 (609)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 350 (609)
...|-..|......++.++|.++.++.+.. ++.- -...|.++++.-..-|.-+...++|+++.+. --....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 445666666666666666666666666542 1110 1234555555555555555666666666553 112344556
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 037911 351 LIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVS-ISRDIYDYLIVALCQDN 429 (609)
Q Consensus 351 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~ 429 (609)
|...|.+.+.+++|.++++.|.++ ..-....|...+..+.+.++-+.|..++.+..+.-.. -........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 666666666666666666666654 2234455666666666666666666666655543211 01222333334444555
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037911 430 RPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKP 483 (609)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 483 (609)
+.+.+..+|+...... +.....|+..++.-.++|+.+.+..+|+++...++.|
T Consensus 1615 DaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5555555555554432 3344555555555555555555555555555554433
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.58 E-value=1.4e-05 Score=69.78 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=63.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+.-.|+-+.+..+....... .+.+....+..+....+.|++..|...+.+..... ++|...|+.+.-+|.+.|+++.
T Consensus 75 a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhH
Confidence 344444444444444433221 12333333334444444444444444444443321 3444444444444444444444
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLF 333 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 333 (609)
|..-|.+..+.- .-+...+|.+...+.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 153 Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 153 ARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 444444444331 112334444444444444444444444444433222 3333334444444444444444443
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.58 E-value=9.7e-06 Score=70.83 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=124.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037911 130 CLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCN 209 (609)
Q Consensus 130 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (609)
..+...+...|+-+....+...... ..+.+..+....+. ...+.|++.+|+..|+++.... ++|...|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk-------~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~ 138 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGK-------NQIRNGNFGEAVSVLRKAARLA-PTDWEAWN 138 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHH-------HHHHhcchHHHHHHHHHHhccC-CCChhhhh
Confidence 5666777777777777777766553 34566666766777 7888999999999999888765 78888899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKG 289 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 289 (609)
.+.-+|.+.|+++.|..-|.+..+. ..-+....+.|.-.+.-.|+.+.|+.++......+ .-|..+-..+.......|
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQG 216 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcC
Confidence 9999999999999999988888774 23456677788888888899999999988887764 336777788888888899
Q ss_pred CHhHHHHHHHHHhh
Q 037911 290 RLNDAFYLYRIMYR 303 (609)
Q Consensus 290 ~~~~a~~~~~~~~~ 303 (609)
++++|.++-..-..
T Consensus 217 ~~~~A~~i~~~e~~ 230 (257)
T COG5010 217 DFREAEDIAVQELL 230 (257)
T ss_pred ChHHHHhhcccccc
Confidence 99998887655443
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=6.1e-05 Score=80.28 Aligned_cols=227 Identities=12% Similarity=0.120 Sum_probs=122.1
Q ss_pred CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 159 CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV-GFQP---SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
.|.+.-.|...+. .....++.++|.+++++++.. +++- -...|.++++.-...|.-+...++|+++.+.
T Consensus 1454 sPNSSi~WI~YMa-------f~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMA-------FHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred CCCcchHHHHHHH-------HHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 3444444555554 455555555555555555431 1111 1124555555555556666666666666653
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC-CHhhH
Q 037911 235 GICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP-DLVTY 313 (609)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~ 313 (609)
...-..|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.++.+-+.|..++.+..+.=++- .....
T Consensus 1527 --cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1527 --CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred --cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 222344556666666666666666666666654 12345566666666666666666666666665431110 12222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH--HHHHHHHHHHH
Q 037911 314 TTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT--FTCQIIVQGYG 391 (609)
Q Consensus 314 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 391 (609)
...+..-.+.|+.+.+..+|+..... .+.-...|+..|++-.+.|+.+.+..+|++++..++.|-- ..|...+..=-
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 33333444566666666666666654 2334556666666666666666666777666666554432 23444444333
Q ss_pred ccCCH
Q 037911 392 KEGRL 396 (609)
Q Consensus 392 ~~~~~ 396 (609)
+.|+-
T Consensus 1683 ~~Gde 1687 (1710)
T KOG1070|consen 1683 SHGDE 1687 (1710)
T ss_pred hcCch
Confidence 44443
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=1.1e-05 Score=73.96 Aligned_cols=181 Identities=12% Similarity=0.055 Sum_probs=123.8
Q ss_pred HHHhcCCChhHHHHHHHHhhhcCCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccc
Q 037911 98 VLLRCQSDSVSALTFFNWVKNDLEIKP-TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDC 176 (609)
Q Consensus 98 ~l~~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (609)
......++++.|...|+.+.......+ ...++..++.++...|++++|...++++++..++.+.....+..+..
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~----- 115 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGL----- 115 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHH-----
Confidence 344566899999999999986432222 23578889999999999999999999999875544443334444444
Q ss_pred hhHHHHh--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 037911 177 NWAYVKV--------GLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTH 248 (609)
Q Consensus 177 ~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 248 (609)
.+... |++++|++.|+++.+.. +.+...+..+..... .. .... .....+..
T Consensus 116 --~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~------~~~~--------~~~~~~a~ 174 (235)
T TIGR03302 116 --SNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR------NRLA--------GKELYVAR 174 (235)
T ss_pred --HHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH------HHHH--------HHHHHHHH
Confidence 45444 78999999999998754 223333332221111 00 0000 11124566
Q ss_pred HHHHcCChHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEGF--DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
.+.+.|++++|...++...+... +.....+..+..++.+.|++++|...++.+...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78889999999999999887621 123567888899999999999999998888765
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00023 Score=62.46 Aligned_cols=249 Identities=14% Similarity=0.129 Sum_probs=158.6
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.|.-.|.+..++..-+..... +.++..--.+-++|...|++..... +... |-.|.......+.......++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHH
Confidence 566677777777665554432 2344444455667777777654433 2222 113334444444444444555444
Q ss_pred HH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 259 VN-GFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 259 a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
-+ ++.+.+.......+......-...|++.|++++|++..+... +......=...+.+..+++-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 445555554333343444444567889999999999887622 33344444556678889999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 037911 338 HRGLSPDIVSYNTLIFAYCK----EGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSI 413 (609)
Q Consensus 338 ~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 413 (609)
+.. +..|.+.|..++.+ .+++.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++.......
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 752 55666666666653 45688999999999874 5788888898899999999999999999998887644
Q ss_pred CHHHHHHHHHHHHhcCChHHH-HHHHHHHHhC
Q 037911 414 SRDIYDYLIVALCQDNRPFAA-TSLLERIGQD 444 (609)
Q Consensus 414 ~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~ 444 (609)
++.+...++..-...|...++ .+.+..+...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 566666666655556654443 3455555443
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=7.1e-05 Score=78.99 Aligned_cols=170 Identities=12% Similarity=0.086 Sum_probs=112.3
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP 203 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (609)
.+...+..|+..+...|++++|.+++++.++. .|.....|-.+.- .+.+.++..++..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~-------l~~q~~~~~~~~lv----------- 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGI-------LSLSRRPLNDSNLL----------- 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHH-------HHHhhcchhhhhhh-----------
Confidence 37888889999998999999999999977765 3334444433333 45666665555444
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 283 (609)
.++.......++..+..++..|... .-+...+..+..+|-+.|+.++|..+++++.+.. +-|+.+.|.+..
T Consensus 88 ------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY 158 (906)
T PRK14720 88 ------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLAT 158 (906)
T ss_pred ------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHH
Confidence 2333334444554444555555553 3455577777888888888888888888888776 446777888888
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 284 SYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 284 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
.|... ++++|++++.+.... +...+++.++.++|.++...
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88877 888888887776654 34445555666666665554
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=2.6e-05 Score=68.51 Aligned_cols=119 Identities=9% Similarity=0.030 Sum_probs=75.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCC--HHHH
Q 037911 463 CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGY-CMEKD--VNKA 539 (609)
Q Consensus 463 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 539 (609)
.++.+++...++...+.+. .|...|..+...|...|++++|...|+++.+.. +-+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666655432 456667777777777777777777777776543 33555666666653 45555 4777
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 540 EALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.+++++..+.. +.+...+..+...+.+.|++++|+..|+++++.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777653 224566666777777777777777777777654
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=9e-05 Score=77.47 Aligned_cols=137 Identities=13% Similarity=0.077 Sum_probs=81.7
Q ss_pred CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 037911 158 DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGIC 237 (609)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 237 (609)
..+.+.+.+..|.. ...+.|++++|..+++.+.+.. +.+......+..++.+.+++++|...+++..... +
T Consensus 81 ~~~~~~~~~~~La~-------i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p 151 (694)
T PRK15179 81 RYPHTELFQVLVAR-------ALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-S 151 (694)
T ss_pred hccccHHHHHHHHH-------HHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-C
Confidence 35555666666666 6666666666666666666643 3344555556666666666666666666666542 2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 238 PNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
-+......+..++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+.
T Consensus 152 ~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 152 SSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334445555556666666666666666666532 223555666666666666666666666666543
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.49 E-value=0.00013 Score=77.19 Aligned_cols=239 Identities=11% Similarity=0.146 Sum_probs=161.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 037911 202 QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTH-TFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNT 280 (609)
Q Consensus 202 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (609)
+.+...+..|+..+...+++++|.++.++..+. .|+.. .|-.+...+.+.++.+.+.-+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 345678889999999999999999999977664 45543 333333356666664444433 3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037911 281 LISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGK 360 (609)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 360 (609)
++.......++.-+..+...|.+.+- +...+..+..+|-+.|+.++|..+|+++.+.. +-|..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 34444455566555556666665432 45577888899999999999999999999886 45788889999999888 9
Q ss_pred hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037911 361 MQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLER 440 (609)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
+++|..++.+.+.. +...+++.++.++|.++....+. +...+ .++.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f----------------~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFF----------------LRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHH----------------HHHHHH
Confidence 99999988887654 56667888888888888876432 22222 222222
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 037911 441 IGQD-GYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFC 496 (609)
Q Consensus 441 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 496 (609)
+... +..--..++-.+-..|...++++++..+++.+.+... -|..+..-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 2111 2233445566666777778888888888888887653 24455666666664
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=1.1e-05 Score=66.94 Aligned_cols=104 Identities=12% Similarity=-0.060 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 037911 488 YRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAE 567 (609)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 567 (609)
+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+...... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445566667777777777777777543 3456667777777777777777777777777542 3355667777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 037911 568 DGDLSKLMELQKRFLRLGFAPNNLTCKY 595 (609)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 595 (609)
.|++++|++.|++.++. .|+...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~--~p~~~~~~~ 130 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM--SYADASWSE 130 (144)
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 77777777777777743 565544443
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=1.9e-05 Score=65.56 Aligned_cols=95 Identities=9% Similarity=-0.035 Sum_probs=60.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHH
Q 037911 129 YCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSC 208 (609)
Q Consensus 129 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 208 (609)
+.....++...|++++|...|+.++.. .|.+..++..+.. .+.+.|++++|+..|+++.+.+ +.+...+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~-------~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~ 95 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAG-------TWMMLKEYTTAINFYGHALMLD-ASHPEPV 95 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHhcC-CCCcHHH
Confidence 444566666667777777776666644 4455666666665 6666777777777777766654 4556666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 209 NFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 209 ~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
..+..++...|+.++|...|+...+.
T Consensus 96 ~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 96 YQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666667777777666666553
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=0.00016 Score=69.15 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=50.8
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHhHHH
Q 037911 217 KLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD-LVTYNTLISSYCKKGRLNDAF 295 (609)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~ 295 (609)
..|++++|+..++.+.+. .+-|.+........+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 344455555555554442 2233333334444455555555555555554443 233 333334444555555555555
Q ss_pred HHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHH
Q 037911 296 YLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQ 331 (609)
Q Consensus 296 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 331 (609)
.+++........ |...|..|..+|...|+..++..
T Consensus 395 ~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 395 RILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHH
Confidence 555544443322 44455555555555554444433
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.0003 Score=61.72 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=54.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh----c
Q 037911 248 HVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK----E 323 (609)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~ 323 (609)
..|+..|++++|.+..+... +......=+..+.+..+++-|.+.+++|.+.. +..|.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34555555555555554411 12222222233444455555555555555431 33444444433332 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037911 324 GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
+.+.+|.-+|++|.++ ..|+..+.+-...++...|++++|..++++.+.+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3355555555555543 3455555555555555555555555555555544
No 132
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.35 E-value=3e-05 Score=68.08 Aligned_cols=119 Identities=12% Similarity=0.137 Sum_probs=67.6
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCC--hHHH
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVF-CKNGD--VDKV 259 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a 259 (609)
.++.++++..+++.++.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555555543 4555666666666666666666666666665542 23445555555543 44454 3666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
.+++++..+.+ +-+..++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666553 224555666666666666666666666666654
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00066 Score=59.17 Aligned_cols=186 Identities=14% Similarity=0.125 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH-HHHHHHHHHHHccCCHH
Q 037911 324 GKVREAHQLFHRMVHR---G-LSPDIV-SYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT-FTCQIIVQGYGKEGRLL 397 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~---g-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 397 (609)
.+.++..+++.++... | ..++.. .|..++-+....|+.+.|..+++.+... + |.. ..-..-.-.+-..|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 3455566666555432 3 344443 3444455555667777777777776655 2 332 22222222344567777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 398 SALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMV 477 (609)
Q Consensus 398 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 477 (609)
+|+++++.+.+.+ +.|..++..-+.+.-..|+..+|++.+.+..+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777777777765 445666666666666677777787777777554 46688888888888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHhc---CCCHhHHHHHHHHHHHC
Q 037911 478 DRNIKPSLSTYRALICCFCG---IGRSGEAVSLMDEMLES 514 (609)
Q Consensus 478 ~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~ 514 (609)
-..+ -++..+..+...+.- ..+.+-|.++|.+.++.
T Consensus 182 l~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6432 233444455554433 33556678888888764
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.0011 Score=57.92 Aligned_cols=188 Identities=14% Similarity=0.053 Sum_probs=142.4
Q ss_pred cCChHHHHHHHHHHHHC---C-CccCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 037911 358 EGKMQESKSLLYEMMGN---G-IYPDTF-TCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPF 432 (609)
Q Consensus 358 ~g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 432 (609)
..+.++..+++.+++.. | ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45677888888777642 3 445553 36666777788899999999999987764 334444433344566778899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHH
Q 037911 433 AATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEML 512 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 512 (609)
+|.+.++.+...+ +.|..++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-++++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998776 567777777677777778888999888888876 55799999999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHc
Q 037911 513 ESGMLPDSQICRVLINGYCMEK---DVNKAEALLGFFAKK 549 (609)
Q Consensus 513 ~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 549 (609)
-.. +-++..+..+...+.-.| +.+.|.+++.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 643 345556667777766655 577899999998866
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=4.4e-05 Score=62.99 Aligned_cols=108 Identities=16% Similarity=0.066 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 486 STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
.....+...+...|++++|...++.+...+ +.+...+..+...+...|++++|..+++...+.. +.+...+..+..+|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334455566666777777777777776543 3355666677777777777777777777766543 33455666667777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037911 566 AEDGDLSKLMELQKRFLRLGFAPNNLTCKYMI 597 (609)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 597 (609)
...|++++|.+.|++.++. .|+...+..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 125 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEYSELK 125 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchHHHHH
Confidence 7777777777777777744 45655544443
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=6.7e-05 Score=62.53 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH--H
Q 037911 129 YCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI--V 206 (609)
Q Consensus 129 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 206 (609)
|..++..+ ..++...+...++.+....++.+........+.. .+...|++++|...|+.+.+....++. .
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~-------~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAK-------AAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 33333333 3666666666667766653332222333333334 566667777777777776665422221 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEK 265 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (609)
....|...+...|++++|+..++..... ......+.....++.+.|+.++|...|+.
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333455666666666666666553221 22334444555566666666666666654
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=0.00067 Score=64.98 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=112.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
....+.-..-.....|.+++|+..++.++.. .|.+......... .+.+.++.++|.+.++++.... |+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~-------i~~~~nk~~~A~e~~~kal~l~--P~ 372 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGD-------ILLEANKAKEAIERLKKALALD--PN 372 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCChHHHHHHHHHHHhcC--CC
Confidence 3445555556667778888899988888865 5566666666666 7888899999999998888754 44
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 037911 205 -IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283 (609)
Q Consensus 205 -~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 283 (609)
....-.+..+|.+.|+.++|+.++++.... .+-|...|..|..+|...|+..++..-..+.
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~----------------- 434 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG----------------- 434 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH-----------------
Confidence 556667778888888888888888888765 4677888888888888888888777666543
Q ss_pred HHHhcCCHhHHHHHHHHHhhC
Q 037911 284 SYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 284 ~~~~~g~~~~a~~~~~~~~~~ 304 (609)
|.-.|++++|...+....+.
T Consensus 435 -~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 -YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -HHhCCCHHHHHHHHHHHHHh
Confidence 44568888888888777764
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=8.2e-05 Score=61.36 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=60.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+...|++++|.+.|+.+.+.+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+...+...|++++
T Consensus 26 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~ 103 (135)
T TIGR02552 26 NLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPES 103 (135)
T ss_pred HHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHH
Confidence 6667777777777777776654 4466666667777777777777777777766543 3445666666666777777777
Q ss_pred HHHHHHHHHHc
Q 037911 259 VNGFLEKIEEE 269 (609)
Q Consensus 259 a~~~~~~~~~~ 269 (609)
|...++...+.
T Consensus 104 A~~~~~~al~~ 114 (135)
T TIGR02552 104 ALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHh
Confidence 77777766655
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=0.00013 Score=60.83 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 037911 453 YNELMESLCKCDSVADALLLKDEMVDRNIKPSL--STYRALICCFCGIGRSGEAVSLMDEMLESGMLPD--SQICRVLIN 528 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~ 528 (609)
|..++..+ ..++...+...++.+.+....-.. ...-.+...+...|++++|...|+.+......|+ ......|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 357777777777777765321111 2223344667778888888888888877542222 123445677
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 529 GYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 581 (609)
.+...|++++|...++..... ......+....++|.+.|++++|.+.|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777888888888888664322 334456677778888888888888888764
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=0.00012 Score=70.64 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGY 530 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 530 (609)
.....|+..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|++++++.++.. +-+...+..-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 444556666667788888888888888765 443 3446677777778888888888888642 44667777777788
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 531 CMEKDVNKAEALLGFFAKKFQIYDT-ESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
.+.++++.|.++.+++.+. .|+. .+|..|+.+|...|++++|+..++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888876 5544 688888888888888888888887764
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=7.4e-06 Score=48.93 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=31.1
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037911 556 ESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNN 590 (609)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 590 (609)
.+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999999873
No 142
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.02 E-value=0.0026 Score=57.93 Aligned_cols=69 Identities=19% Similarity=0.110 Sum_probs=46.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 200 (609)
++..+...+..+...|++++|.+.|+++....+..+......-.++. +|.+.+++++|+..+++.++.-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~-------ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIY-------AYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-------HHHhcCCHHHHHHHHHHHHHhC
Confidence 45555566667777888888888888888764333222223334444 7788888888888888887753
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1.3e-05 Score=47.90 Aligned_cols=33 Identities=58% Similarity=1.123 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037911 312 TYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD 344 (609)
Q Consensus 312 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 344 (609)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 144
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.98 E-value=0.0017 Score=61.12 Aligned_cols=199 Identities=14% Similarity=0.224 Sum_probs=100.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCC---CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCP---HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCN 209 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (609)
++.|-..|++++|...|..+........ .....|..... +.+.+++++|++.++++
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~--------~~k~~~~~~Ai~~~~~A------------- 100 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAAN--------CYKKGDPDEAIECYEKA------------- 100 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--------HHHHTTHHHHHHHHHHH-------------
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHhhCHHHHHHHHHHH-------------
Confidence 3456667788888877777755421111 11122222222 22333666666555544
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCCC--HHhHHHHH
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN-GDVDKVNGFLEKIEEE----GFDPD--LVTYNTLI 282 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li 282 (609)
+..|...|++..|-.++.++- ..|... |++++|.+.|++..+. | .+. ..++..+.
T Consensus 101 --~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A 162 (282)
T PF14938_consen 101 --IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAA 162 (282)
T ss_dssp --HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred --HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHH
Confidence 345666677766666655543 334455 6777777777765542 2 111 23455666
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCccC-----CHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHH
Q 037911 283 SSYCKKGRLNDAFYLYRIMYRRNVLP-----DLV-TYTTLMNGLCKEGKVREAHQLFHRMVHRG--LSP--DIVSYNTLI 352 (609)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~~~~~~~p-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p--~~~~~~~li 352 (609)
..+.+.|++++|.++|+++....... +.. .|...+-++...||...|.+.+++..... +.. .......||
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 77777788888888887776542211 111 12223334555677777777777776541 111 133445555
Q ss_pred HHHHHcCC---hHHHHHHHHHH
Q 037911 353 FAYCKEGK---MQESKSLLYEM 371 (609)
Q Consensus 353 ~~~~~~g~---~~~A~~~~~~~ 371 (609)
.++- .|+ +++++.-|+.+
T Consensus 243 ~A~~-~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 243 EAYE-EGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHH-TT-CCCHHHHCHHHTTS
T ss_pred HHHH-hCCHHHHHHHHHHHccc
Confidence 5553 333 44444444443
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=0.00034 Score=56.11 Aligned_cols=100 Identities=11% Similarity=0.025 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC--CCH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ--PSI 205 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~ 205 (609)
++...+..+.+.|++++|.+.|..++...++.+........+.. .+.+.|++++|+..|+.+...... ...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGE-------AYYAQGKYADAAKAFLAVVKKYPKSPKAP 76 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH-------HHHhhccHHHHHHHHHHHHHHCCCCCccc
Confidence 45555666666666666666666666553322222334444444 566666666666666666553211 123
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
.++..+..++.+.|+.++|...++++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 44555555666666666666666666554
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.6e-05 Score=47.07 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=27.6
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037911 556 ESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAP 588 (609)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 588 (609)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 468888888888888888888888888888877
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.92 E-value=0.00018 Score=69.72 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHH
Q 037911 237 CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE--GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYT 314 (609)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 314 (609)
+.+......+++.+....+++.+..++-+.... ....-..|.+++++.|.+.|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555555555443 111223344566666666666666666666665666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 037911 315 TLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKE 358 (609)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 358 (609)
.||+.+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666665555444545554444444443
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=2.2e-05 Score=46.47 Aligned_cols=29 Identities=34% Similarity=0.594 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037911 313 YTTLMNGLCKEGKVREAHQLFHRMVHRGL 341 (609)
Q Consensus 313 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 341 (609)
|+.++.+|++.|+++.|.++|++|.+.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444443333
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.88 E-value=0.00061 Score=65.87 Aligned_cols=117 Identities=19% Similarity=0.180 Sum_probs=53.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCH
Q 037911 247 THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKV 326 (609)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 326 (609)
+..+...++++.|.++++++.+.. |+ ....++..+...++-.+|.+++++..+.... +......-...+.+.++.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence 333444455555555555555442 22 2223444444445555555555555443221 333333333444455555
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Q 037911 327 REAHQLFHRMVHRGLSPD-IVSYNTLIFAYCKEGKMQESKSLLYE 370 (609)
Q Consensus 327 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (609)
+.|+++.+++.+. .|+ -.+|..|..+|.+.|+++.|+..++.
T Consensus 251 ~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 251 ELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 5555555555443 222 23455555555555555555544443
No 150
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.87 E-value=0.00032 Score=60.27 Aligned_cols=84 Identities=10% Similarity=-0.039 Sum_probs=49.0
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
....|..++..+...|++++|...++.++...+..+....++..+.. .|...|++++|+..+++..+.. +..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~-------~~~~~g~~~eA~~~~~~Al~~~-~~~ 105 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL-------IHTSNGEHTKALEYYFQALERN-PFL 105 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-cCc
Confidence 45556666666777777777777777776552221112334555555 6777777777777777776542 333
Q ss_pred HHHHHHHHHHHH
Q 037911 205 IVSCNFLLNGLL 216 (609)
Q Consensus 205 ~~~~~~ll~~~~ 216 (609)
..+++.+...+.
T Consensus 106 ~~~~~~la~i~~ 117 (168)
T CHL00033 106 PQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHH
Confidence 444555554444
No 151
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=0.04 Score=55.43 Aligned_cols=206 Identities=12% Similarity=0.095 Sum_probs=106.9
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCC--------CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHH
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCP--------HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFR 194 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~ 194 (609)
.|-+..|..++..-...-.++.|...|-+.-.- .+.. .+...-..- .-.--|++++|.++|-
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~ae---------i~~~~g~feeaek~yl 758 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAE---------ISAFYGEFEEAEKLYL 758 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHh---------HhhhhcchhHhhhhhh
Confidence 566778887777666555666665554333211 1110 001111111 1123467777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 037911 195 KTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI-GICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDP 273 (609)
Q Consensus 195 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 273 (609)
+|.+++ ..+..+.+.|++-.+.++++.--.. .-..-...|+.+.+.++....+++|.+.|..-...
T Consensus 759 d~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---- 825 (1189)
T KOG2041|consen 759 DADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---- 825 (1189)
T ss_pred ccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----
Confidence 665532 2345556666666666655432110 00011345666777777777777777776653211
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037911 274 DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIF 353 (609)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 353 (609)
...+.++.+..++++-..+-+.+.+ +....-.+..++...|.-++|.+.|-+.. .|. ..+.
T Consensus 826 -----e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~ 886 (1189)
T KOG2041|consen 826 -----ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVH 886 (1189)
T ss_pred -----HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHH
Confidence 1234555555555554444433332 44455566777777777777766554322 111 2345
Q ss_pred HHHHcCChHHHHHHHHH
Q 037911 354 AYCKEGKMQESKSLLYE 370 (609)
Q Consensus 354 ~~~~~g~~~~A~~~~~~ 370 (609)
.|...++|.+|.++-+.
T Consensus 887 tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56666677777666544
No 152
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.045 Score=55.07 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037911 202 QPSIVSCNFLLNGLLKLNCIDQCWQVYEEM 231 (609)
Q Consensus 202 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 231 (609)
.|.+..|..|.......-.++.|...|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 356666666665555555555555555443
No 153
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.83 E-value=0.033 Score=53.26 Aligned_cols=463 Identities=14% Similarity=0.117 Sum_probs=222.2
Q ss_pred HHHHhcCCChhHHHHHHHHhhhcCCCCCCH---H-hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhc
Q 037911 97 RVLLRCQSDSVSALTFFNWVKNDLEIKPTS---S-NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISC 172 (609)
Q Consensus 97 ~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~---~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (609)
+-+++.++++++|.++|...-....-.|.. + .-..++++|.. ++.+.....+.++.+. .+..+....|..+
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~-~~~s~~l~LF~~L--- 87 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ-FGKSAYLPLFKAL--- 87 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh-cCCchHHHHHHHH---
Confidence 345677889999999998877543222221 2 23456666664 4566666666666655 2233344445554
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDV--GFQP------------SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIG--- 235 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--- 235 (609)
...+.+.+.+|++.+....+. +..+ +...=+..++.+...|++.+++.+++++...=
T Consensus 88 ------~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkr 161 (549)
T PF07079_consen 88 ------VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKR 161 (549)
T ss_pred ------HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhh
Confidence 356899999999998877653 2221 12222456677788888888888888776532
Q ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhH
Q 037911 236 -ICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD-LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTY 313 (609)
Q Consensus 236 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 313 (609)
..-+..+|+.++-.+.+ ..|-++.+.. .-| ..-|.-++..|.+.=.. ++...=..+.|.....
T Consensus 162 E~~w~~d~yd~~vlmlsr--------SYfLEl~e~~-s~dl~pdyYemilfY~kki~~------~d~~~Y~k~~peeeL~ 226 (549)
T PF07079_consen 162 ECEWNSDMYDRAVLMLSR--------SYFLELKESM-SSDLYPDYYEMILFYLKKIHA------FDQRPYEKFIPEEELF 226 (549)
T ss_pred hhcccHHHHHHHHHHHhH--------HHHHHHHHhc-ccccChHHHHHHHHHHHHHHH------HhhchHHhhCcHHHHH
Confidence 33677888876655543 2333332211 111 11122333333322110 1100001122333333
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCc----cCHHHHHHH
Q 037911 314 TTLMNGLCKE--GKVREAHQLFHRMVHRGLSPDIVS-YNTLIFAYCKEGKMQESKSLLYEMMGNGIY----PDTFTCQII 386 (609)
Q Consensus 314 ~~ll~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l 386 (609)
..++....-. .+..--+++++.....-+.|+... ...|+..+.+ +.+++..+-+.+....+. -=..++..+
T Consensus 227 s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~ 304 (549)
T PF07079_consen 227 STIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNL 304 (549)
T ss_pred HHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333332211 112223334444433334444322 2233333332 333433333332221110 013446666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 387 VQGYGKEGRLLSALNLVVELQRFGVSISRD-----IYDYLIVALCQDN----RPFAATSLLERIGQDGYVPSLEIYNELM 457 (609)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
+....+.++...|-..+.-+...++..... +-..+-+..+..+ +..+=..+++......+ .....-..|+
T Consensus 305 Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di-DrqQLvh~L~ 383 (549)
T PF07079_consen 305 LSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI-DRQQLVHYLV 383 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHH
Confidence 666667777777766666555443211100 0011111222110 11112223333333221 1222222222
Q ss_pred ---HHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHhcC---CCHhHHHHHHHHHHHCCCCCC----HHH
Q 037911 458 ---ESLCKCDS-VADALLLKDEMVDRNIKPSLSTYRAL----ICCFCGI---GRSGEAVSLMDEMLESGMLPD----SQI 522 (609)
Q Consensus 458 ---~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~---g~~~~A~~~~~~~~~~~~~p~----~~~ 522 (609)
.-+.+.|. -++|+.+++.+.+-.. -|...-+.+ =..|.++ ..+..-+.+-+-+.+.|+.|- ...
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 22344444 6777777777765321 222222211 1223221 222333333333344566552 233
Q ss_pred HHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 037911 523 CRVLING--YCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYM 596 (609)
Q Consensus 523 ~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 596 (609)
-|-|.++ +...|++.++.-.-.-+.+- .|.+.+|..++-++....++++|..++..+ +|+..+++.=
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 4444333 45678888877666555544 677788888888888888888888887765 5666665543
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.025 Score=53.29 Aligned_cols=53 Identities=13% Similarity=0.353 Sum_probs=35.6
Q ss_pred HHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 136 LAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 136 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
+.+..+|..|+..+..+++. +|.+...|..-.. .+...|++++|..-.+.-++
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~---~pd~a~yy~nRAa-------~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDM---CPDNASYYSNRAA-------TLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHh---CccchhhhchhHH-------HHHHHHhHhhcccchhhhee
Confidence 44556777788888888866 4555555555444 67778888888777666554
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.82 E-value=0.0013 Score=56.58 Aligned_cols=95 Identities=11% Similarity=0.016 Sum_probs=64.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
....+..++..+...|++++|...|+++++..+..+.....+..+.. .+.+.|++++|+..++++.+.. +.+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~-------~~~~~g~~~~A~~~~~~al~~~-p~~ 105 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGI-------IYASNGEHDKALEYYHQALELN-PKQ 105 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 45566777777888888888888888887653222222455666666 7888888888888888888753 335
Q ss_pred HHHHHHHHHHHHhcCChHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQV 227 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~ 227 (609)
...+..+...+...|+...+..-
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhC
Confidence 56666667777777765544433
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.0006 Score=54.60 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=80.2
Q ss_pred HHHhcCCChhHHHHHHHHhhhcCCC-CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccc
Q 037911 98 VLLRCQSDSVSALTFFNWVKNDLEI-KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDC 176 (609)
Q Consensus 98 ~l~~~~~~~~~A~~~f~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (609)
......++++.|.+.|+.+....+. ......+..++.++.+.|++++|...++.+....++.+.....+..+..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~----- 84 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM----- 84 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH-----
Confidence 3445678999999999999864322 2235678889999999999999999999999875444444566666666
Q ss_pred hhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037911 177 NWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCN 209 (609)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (609)
.+.+.|+.++|...++++.+.. +.+..+..
T Consensus 85 --~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 114 (119)
T TIGR02795 85 --SLQELGDKEKAKATLQQVIKRY-PGSSAAKL 114 (119)
T ss_pred --HHHHhCChHHHHHHHHHHHHHC-cCChhHHH
Confidence 8899999999999999999865 44444433
No 157
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.81 E-value=0.00042 Score=67.23 Aligned_cols=125 Identities=17% Similarity=0.142 Sum_probs=105.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 037911 199 VGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI--GICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLV 276 (609)
Q Consensus 199 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 276 (609)
.+.+.+......+++.+....+++.+..++-+.... ....-..|.+++++.|.+.|..++++.++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344667777888888888888899999998888764 222345677899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc
Q 037911 277 TYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE 323 (609)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 323 (609)
++|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998877666778877777777665
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.00055 Score=52.03 Aligned_cols=91 Identities=14% Similarity=0.090 Sum_probs=49.2
Q ss_pred HHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037911 490 ALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDG 569 (609)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 569 (609)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.. ..+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444455556666666665555432 2233445555555556666666666666555442 222345555556666666
Q ss_pred CHHHHHHHHHHHH
Q 037911 570 DLSKLMELQKRFL 582 (609)
Q Consensus 570 ~~~~A~~~~~~m~ 582 (609)
++++|...+++..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666666655
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.73 E-value=0.00095 Score=64.83 Aligned_cols=90 Identities=14% Similarity=0.219 Sum_probs=51.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLL 212 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (609)
+..+...|++++|+..|+++++. .|.+...+..+.. +|.+.|++++|+..++++++.. +.+...|..+.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~-------~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg 77 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQ-------ANIKLGNFTEAVADANKAIELD-PSLAKAYLRKG 77 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34445556666666666666654 3344455555544 5566666666666666666543 33455555555
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q 037911 213 NGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~ 233 (609)
.+|...|++++|+..|++..+
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 666666666666666666555
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.73 E-value=0.0091 Score=54.37 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=52.8
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHh
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKP-TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLI 170 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (609)
...|+++.|.+.|+.+.......+ ...+...++.++.+.+++++|...++++++..+..|....++-.++
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 446899999999999987533332 2233467889999999999999999999999777766655554444
No 161
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.73 E-value=0.014 Score=51.83 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=45.4
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
...+...+..+...|++.+|.+.|+.+....+..+........++. ++.+.|++++|...+++.++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~-------a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAY-------AYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHH-------HHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHH
Confidence 3445555666777788888888888887776666666666666666 777888888888888777663
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.72 E-value=0.00061 Score=51.77 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHH
Q 037911 129 YCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSC 208 (609)
Q Consensus 129 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 208 (609)
+..++..+...|++++|...++++.+. .|.+...+..+.. .+...|++++|.+.|+...+.. +.+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 71 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAA-------AYYKLGKYEEALEDYEKALELD-PDNAKAY 71 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhCC-CcchhHH
Confidence 344455555555555555555555543 2222233333333 4555555555555555555433 2233344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 037911 209 NFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 209 ~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
..+...+...|+++.|...+....
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444455555555555555554443
No 163
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.00077 Score=50.91 Aligned_cols=77 Identities=16% Similarity=0.312 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHCCCccCHHHHHH
Q 037911 315 TLMNGLCKEGKVREAHQLFHRMVHRGL-SPDIVSYNTLIFAYCKEG--------KMQESKSLLYEMMGNGIYPDTFTCQI 385 (609)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~ 385 (609)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555555777777777777777776 677777777776665432 12344555666666666666666666
Q ss_pred HHHHHH
Q 037911 386 IVQGYG 391 (609)
Q Consensus 386 l~~~~~ 391 (609)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665543
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.70 E-value=0.00046 Score=52.05 Aligned_cols=78 Identities=26% Similarity=0.332 Sum_probs=53.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCChhhHHHH
Q 037911 526 LINGYCMEKDVNKAEALLGFFAKKFQ-IYDTESYNAVFNMFAEDG--------DLSKLMELQKRFLRLGFAPNNLTCKYM 596 (609)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 596 (609)
.|..|...|++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..||+++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666666 566666666666554422 344567889999999999999999999
Q ss_pred HHHHhcc
Q 037911 597 IHSLWKG 603 (609)
Q Consensus 597 l~~~~~~ 603 (609)
+.++.+.
T Consensus 111 l~~Llkg 117 (120)
T PF08579_consen 111 LGSLLKG 117 (120)
T ss_pred HHHHHHh
Confidence 9988764
No 165
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.011 Score=55.52 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=26.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 037911 248 HVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIM 301 (609)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 301 (609)
..+.+..++..|+..+...++... -+...|..-...+..-|++++|+--.+.-
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~ 109 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQS 109 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhh
Confidence 445555556666666665555532 23344444444555555555555444333
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.00098 Score=64.76 Aligned_cols=91 Identities=16% Similarity=0.011 Sum_probs=66.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 037911 457 MESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDV 536 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 536 (609)
...+...|++++|+..|+++++.+. .+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 4455667888888888888877543 345667777777778888888888888887643 33566677777788888888
Q ss_pred HHHHHHHHHHHHc
Q 037911 537 NKAEALLGFFAKK 549 (609)
Q Consensus 537 ~~A~~~~~~~~~~ 549 (609)
++|...|+.+.+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877765
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.00046 Score=61.91 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=56.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037911 134 HILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLN 213 (609)
Q Consensus 134 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 213 (609)
+-+.+.++|++|+..|.++++. .|.+...|..-.. +|.+.|.++.|++-.+..+..+ +....+|..|..
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l---~P~nAVyycNRAA-------Ay~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~ 157 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL---DPTNAVYYCNRAA-------AYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGL 157 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc---CCCcchHHHHHHH-------HHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHH
Confidence 3445556666666666666654 3444444544444 6666666666666666666543 334456666666
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 037911 214 GLLKLNCIDQCWQVYEEMGRIGICPNTHTF 243 (609)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 243 (609)
+|...|++++|.+.|++..+ +.|+-.+|
T Consensus 158 A~~~~gk~~~A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 158 AYLALGKYEEAIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHccCcHHHHHHHHHhhhc--cCCCcHHH
Confidence 66666666666666666555 44555544
No 168
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=7.2e-05 Score=43.03 Aligned_cols=30 Identities=17% Similarity=0.441 Sum_probs=22.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 586 (609)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777653
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.0056 Score=57.55 Aligned_cols=146 Identities=10% Similarity=0.148 Sum_probs=82.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-CCHhHHHHHHHHHhhC----Cc-cCCHhhHHHHHHHH
Q 037911 247 THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK-GRLNDAFYLYRIMYRR----NV-LPDLVTYTTLMNGL 320 (609)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~----~~-~p~~~~~~~ll~~~ 320 (609)
+..|...|++..|-..+.++- ..|-.. |++++|++.|++..+. +. .--..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 345666666666655555543 445555 7888888888877642 21 11134556677788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCC--CccC--HHHHHHHHHHH
Q 037911 321 CKEGKVREAHQLFHRMVHRGLS-----PDIV-SYNTLIFAYCKEGKMQESKSLLYEMMGNG--IYPD--TFTCQIIVQGY 390 (609)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~l~~~~ 390 (609)
.+.|++++|.++|+++...-.. .+.. .|-..+-++...||...|.+.+++..... +..+ ......|+.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 8888999999999888765322 1221 22333445556788888888888877542 2111 23445555555
Q ss_pred Hc--cCCHHHHHHHHHHHH
Q 037911 391 GK--EGRLLSALNLVVELQ 407 (609)
Q Consensus 391 ~~--~~~~~~A~~~~~~~~ 407 (609)
-. ...+..++.-|+.+.
T Consensus 246 ~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS
T ss_pred HhCCHHHHHHHHHHHcccC
Confidence 33 234555655555544
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.0006 Score=61.16 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=45.0
Q ss_pred cCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHH
Q 037911 497 GIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD-TESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 575 (609)
+.+++++|+..|.++++.. +-|.+.|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|++.+|+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHH
Confidence 4455555555555555321 223334444444555555555555554444432 121 134444555555555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHH
Q 037911 576 ELQKRFLRLGFAPNNLTCKYMIH 598 (609)
Q Consensus 576 ~~~~~m~~~g~~p~~~~~~~ll~ 598 (609)
+.|++.+ .+.|+..+|..=|.
T Consensus 170 ~aykKaL--eldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKAL--ELDPDNESYKSNLK 190 (304)
T ss_pred HHHHhhh--ccCCCcHHHHHHHH
Confidence 5555554 33455544444443
No 171
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=7.8e-05 Score=42.88 Aligned_cols=26 Identities=38% Similarity=0.810 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 313 YTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 313 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33333333333333333333333333
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.63 E-value=0.00011 Score=54.53 Aligned_cols=83 Identities=19% Similarity=0.291 Sum_probs=61.6
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHH
Q 037911 103 QSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVK 182 (609)
Q Consensus 103 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 182 (609)
+++++.|+.+|+.+.......++...+..++.++.+.|++++|..+++. .+. .+.+......+.. ++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~---~~~~~~~~~l~a~-------~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL---DPSNPDIHYLLAR-------CLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH---HHCHHHHHHHHHH-------HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC---CCCCHHHHHHHHH-------HHHH
Confidence 5789999999999997533223566677789999999999999999988 322 2233444445566 8999
Q ss_pred hCCHHHHHHHHHHH
Q 037911 183 VGLIRESFKTFRKT 196 (609)
Q Consensus 183 ~g~~~~A~~~~~~~ 196 (609)
.|++++|+++|++.
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999999863
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0016 Score=60.94 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 452 IYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICC-FCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGY 530 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 530 (609)
+|..++....+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455566666666666666666666664321 122333322222 22245555566666666653 344556666666666
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCh----hcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 531 CMEKDVNKAEALLGFFAKKFQIYDT----ESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.+.|+.+.|+.+|+..... .+.. ..|..++.-=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666644 2222 35666666666666666666666666643
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.62 E-value=0.0017 Score=53.03 Aligned_cols=96 Identities=10% Similarity=-0.009 Sum_probs=50.4
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHH
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIV 206 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 206 (609)
.....+...+...|++++|.++|+-+... .|.+...|-.|.. .+...|++++|+..|..+...+ +.++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---Dp~~~~y~~gLG~-------~~Q~~g~~~~AI~aY~~A~~L~-~ddp~ 104 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY---DAWSFDYWFRLGE-------CCQAQKHWGEAIYAYGRAAQIK-IDAPQ 104 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHhcC-CCCch
Confidence 34444445555555555555555555543 3344444555544 4555555555555555555544 34445
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
.+-.+..++...|+.+.|.+.|+..+.
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555555443
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0038 Score=53.77 Aligned_cols=91 Identities=13% Similarity=0.056 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037911 450 LEIYNELMESLCKCDSVADALLLKDEMVDRNIKPS--LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLI 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 527 (609)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...++++.+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566677777777888888888887775432222 3566777777788888888888888877642 22455566666
Q ss_pred HHHHccCCHHHHHH
Q 037911 528 NGYCMEKDVNKAEA 541 (609)
Q Consensus 528 ~~~~~~g~~~~A~~ 541 (609)
..+...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 77777666544443
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.59 E-value=0.00024 Score=52.61 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=34.8
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037911 139 NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL 218 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 218 (609)
+|+++.|+.+++++++..+..+ +...+..+.. +|.+.|++++|+.++++ .+.+ +.+....-.+..++.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~-------~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQ-------CYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKL 71 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHH-------HHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHH-------HHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHh
Confidence 3455555555555555422111 2223333344 45555555555555554 2111 11122222334445555
Q ss_pred CChHHHHHHHHH
Q 037911 219 NCIDQCWQVYEE 230 (609)
Q Consensus 219 ~~~~~a~~~~~~ 230 (609)
|++++|+++|++
T Consensus 72 ~~y~eAi~~l~~ 83 (84)
T PF12895_consen 72 GKYEEAIKALEK 83 (84)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 555555555543
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.54 E-value=0.003 Score=51.72 Aligned_cols=91 Identities=16% Similarity=0.046 Sum_probs=44.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 037911 456 LMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKD 535 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 535 (609)
+...+...|++++|.++|+.+...+. -+..-|-.|..++-..|++++|+..|..+.... +-|+..+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 33334445555555555555544332 223334444455555555555555555555443 2344445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 037911 536 VNKAEALLGFFAK 548 (609)
Q Consensus 536 ~~~A~~~~~~~~~ 548 (609)
.+.|.+.|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 178
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.045 Score=51.87 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037911 452 IYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYC 531 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 531 (609)
+.+..+.-+...|+...|.++-.+.. + |+-.-|...+.+++..+++++-.++-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45556777788899999888866653 3 8889999999999999999987776432 124477888999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 532 MEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKR 580 (609)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (609)
+.|+..+|..++.++ .+..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888662 246677888999999998765433
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.49 E-value=0.003 Score=54.17 Aligned_cols=72 Identities=7% Similarity=-0.034 Sum_probs=48.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQP--SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFC 251 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 251 (609)
.+...|++++|+..|++.......+ ...+|..+...+...|++++|+..+++..... +....++..+...+.
T Consensus 44 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 44 SAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 6777888888888888887653222 23467777778888888888888888776642 233444555555555
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.49 E-value=0.0081 Score=61.12 Aligned_cols=141 Identities=11% Similarity=0.025 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcC--------CCHhHHHHHHHHHH
Q 037911 447 VPSLEIYNELMESLCKC-----DSVADALLLKDEMVDRNIKPSL-STYRALICCFCGI--------GRSGEAVSLMDEML 512 (609)
Q Consensus 447 ~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~~~~ 512 (609)
+.+...|...+++.... +..+.|..+|++.++.. |+. ..|..+..++... ++...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45556666665553321 22556777777776644 443 2333333222211 11233334444433
Q ss_pred HC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 037911 513 ES-GMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNL 591 (609)
Q Consensus 513 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 591 (609)
.. ....+...|..+.-.....|++++|...++++... .|+...|..+...+...|+.++|.+.+++.... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 32 12334566666666666677888888888877776 456667777777788888888888888777633 55555
Q ss_pred hH
Q 037911 592 TC 593 (609)
Q Consensus 592 ~~ 593 (609)
||
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 54
No 181
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.043 Score=48.46 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHH-----HH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYN-----TL 281 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 281 (609)
..+.+++.+.-.|.+.-...++.+.++..-+.+......|++.-.+.|+.+.|...|+...+..-..+..+.+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4566666777777777777777777776555566666677777777777777777777665542222322222 22
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 282 ISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
...|.-++++..|...+.+....+.. |...-|.-.-+..-.|+..+|.+.++.|++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445556666666666666655433 3444443333334456666777777777665
No 182
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.48 E-value=0.0019 Score=55.49 Aligned_cols=86 Identities=27% Similarity=0.382 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----------------CCHhHHHHH
Q 037911 239 NTHTFNILTHVFCKN-----GDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK----------------GRLNDAFYL 297 (609)
Q Consensus 239 ~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~~~~a~~~ 297 (609)
|..+|..+++.|.+. |.++-....+..|.+.|+..|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 344444444444432 44455555555555555555555555555554331 123344555
Q ss_pred HHHHhhCCccCCHhhHHHHHHHHHhcC
Q 037911 298 YRIMYRRNVLPDLVTYTTLMNGLCKEG 324 (609)
Q Consensus 298 ~~~~~~~~~~p~~~~~~~ll~~~~~~~ 324 (609)
+++|...|+-||..++..+++.+++.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 555555555555555555555554443
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.46 E-value=0.0051 Score=48.49 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=60.9
Q ss_pred HHHHhcCCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----hhcHHHHHHHH
Q 037911 492 ICCFCGIGRSGEAVSLMDEMLESGMLPD--SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD----TESYNAVFNMF 565 (609)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~ 565 (609)
..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++...... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3445566777777777777777665433 2345566677777777777777777766542 33 12223334456
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 037911 566 AEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600 (609)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 600 (609)
...|+.++|++.+-..+. ++...|.--|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 677777777777666552 3333555555444
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.46 E-value=0.0029 Score=54.33 Aligned_cols=104 Identities=22% Similarity=0.355 Sum_probs=51.9
Q ss_pred CCHHhHHHHHHHHHh-----cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 037911 273 PDLVTYNTLISSYCK-----KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVS 347 (609)
Q Consensus 273 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 347 (609)
.+..+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 355555555555553 34555556666666666666666666666665543 1110 00000000
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCC
Q 037911 348 YNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGR 395 (609)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (609)
..- .-.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 112 ----F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 000 011234456666666666666666666666666655443
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.45 E-value=0.0031 Score=58.97 Aligned_cols=132 Identities=16% Similarity=0.125 Sum_probs=86.2
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHH
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIV 206 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 206 (609)
.+|..+++..-+.+..+.|+.+|.++.+. ......+|...... -|.-.++.+.|.++|+...+. ++.+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~---~~~~~~vy~~~A~~------E~~~~~d~~~A~~Ife~glk~-f~~~~~ 71 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD---KRCTYHVYVAYALM------EYYCNKDPKRARKIFERGLKK-FPSDPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCS-THHHHHHHHH------HHHTCS-HHHHHHHHHHHHHH-HTT-HH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC---CCCCHHHHHHHHHH------HHHhCCCHHHHHHHHHHHHHH-CCCCHH
Confidence 35677777777777788888888888733 22234444433320 133355666688888888764 466777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT---HTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
.|...++.+...|+.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888888888888888764 22222 36777777777778887777777777664
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.44 E-value=0.053 Score=45.27 Aligned_cols=124 Identities=13% Similarity=0.114 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC---CCCCHHHHH
Q 037911 448 PSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG---MLPDSQICR 524 (609)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~ 524 (609)
|+..--..|..+..+.|+..+|...|++...--..-|....-.+.++....+++.+|...++++.+.. -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444444555555555555555555555543334445555555555555555555555555554431 1222 223
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHH
Q 037911 525 VLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
.+...+...|+.+.|+..|+..... .|+...-......+.++|+.++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 4445555555555555555555544 344433333334445555555443
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.43 E-value=0.017 Score=48.12 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC
Q 037911 105 DSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG 184 (609)
Q Consensus 105 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 184 (609)
||+..++ .+.+....-|+...-..+...+.+.|++.+|...|++... +....+......+.. +....+
T Consensus 71 dP~R~~R---ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~-------Aqfa~~ 138 (251)
T COG4700 71 DPERHLR---EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQ-------AQFAIQ 138 (251)
T ss_pred ChhHHHH---HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHH-------HHHhhc
Confidence 5554433 2333333466777777777788888888888887777764 234456666666666 677777
Q ss_pred CHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 037911 185 LIRESFKTFRKTLDVGF-QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFL 263 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 263 (609)
++.+|..+++++.+... ..++...-.+.+.+...|...+|...|+..... -|+...-..-...+.+.|+.+++..-+
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 77777777777776431 012223444556666777777777777776653 355444444444556666655555444
Q ss_pred HHH
Q 037911 264 EKI 266 (609)
Q Consensus 264 ~~~ 266 (609)
..+
T Consensus 217 ~~v 219 (251)
T COG4700 217 VAV 219 (251)
T ss_pred HHH
Confidence 333
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.41 E-value=0.00058 Score=48.17 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=38.3
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037911 531 CMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMI 597 (609)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 597 (609)
.+.|++++|.++|+.+.... +-+...+..++.+|.+.|++++|.++++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 34566677777776666552 224455666666777777777777777766644 55555555444
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0096 Score=54.02 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCChhcHH
Q 037911 483 PSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEK---DVNKAEALLGFFAKKFQIYDTESYN 559 (609)
Q Consensus 483 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~ 559 (609)
-|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++..+. ...++..+|+++.+.. .-|+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 456667777777777777777777777776542 345555555555554432 3556677777777552 33445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037911 560 AVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIH 598 (609)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 598 (609)
.|...+...|++.+|...|+.|++. .|....+..+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 6666677777777777777777743 455555555553
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.39 E-value=0.01 Score=46.87 Aligned_cols=17 Identities=12% Similarity=0.260 Sum_probs=6.3
Q ss_pred HHHhCCHHHHHHHHHHH
Q 037911 180 YVKVGLIRESFKTFRKT 196 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~ 196 (609)
|...|++++|+.+|++.
T Consensus 48 lr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 48 LRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 33333333333333333
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.012 Score=59.97 Aligned_cols=137 Identities=11% Similarity=0.047 Sum_probs=72.0
Q ss_pred CCCCCHHhHHHHHHHHHhCC-----ChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHh--------CCHH
Q 037911 121 EIKPTSSNYCLIVHILAWNN-----KFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKV--------GLIR 187 (609)
Q Consensus 121 ~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------g~~~ 187 (609)
..+.+..+|...+++..... .+..|..+|+++++. .|.....+..+.. +|... ++..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~-------~~~~~~~~~~~~~~~l~ 401 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKAL-------ADIVRHSQQPLDEKQLA 401 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHH-------HHHHHHhcCCccHHHHH
Confidence 34567788888877765432 377999999999987 4555666655443 22111 1122
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 188 ESFKTFRKTLDV-GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKI 266 (609)
Q Consensus 188 ~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 266 (609)
.+.+..++.... ..+.+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++.
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333332221 112233444444444444455555555555555532 44555555555555555555555555555
Q ss_pred HHc
Q 037911 267 EEE 269 (609)
Q Consensus 267 ~~~ 269 (609)
...
T Consensus 480 ~~L 482 (517)
T PRK10153 480 FNL 482 (517)
T ss_pred Hhc
Confidence 443
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.38 E-value=0.0033 Score=58.82 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHC----C-CCCCHHH
Q 037911 453 YNELMESLCKCDSVADALLLKDEMV----DRNIK-PSLSTYRALICCFCGIGRSGEAVSLMDEMLES----G-MLPDSQI 522 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~~~ 522 (609)
|..|...|.-.|+++.|+...+.-+ +.|-+ ....++..+..++.-.|+++.|.+.|+..... | -......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444444444566666654433221 11110 11234555666666666666666666554321 1 1122334
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 523 CRVLINGYCMEKDVNKAEALLGFFAKK----FQ-IYDTESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
.-.|...|.-..++++|+.++.+-... +- .-....+.+|..+|...|..++|+.+.+.-+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445555565556666666665432211 00 1123456666666666666666666555443
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.36 E-value=0.019 Score=50.87 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=51.9
Q ss_pred HhcCCChhHHHHHHHHhhhcCCCC-CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHH
Q 037911 100 LRCQSDSVSALTFFNWVKNDLEIK-PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDL 169 (609)
Q Consensus 100 ~~~~~~~~~A~~~f~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 169 (609)
.-..|++..|.+.|+.+..+.... ....+...++.++.+.|++++|...++.+++..+..+....++-.+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 345689999999999999764443 3677888999999999999999999999999877766555444433
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.34 E-value=0.0015 Score=46.22 Aligned_cols=65 Identities=22% Similarity=0.392 Sum_probs=57.9
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC-CHHHHHHHHHHHHhC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG-LIRESFKTFRKTLDV 199 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~ 199 (609)
++..|..++..+...|++++|+..|+++++. .|.+..++..+.. +|...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~-------~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGL-------AYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHH-------HHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHH-------HHHHhCccHHHHHHHHHHHHHc
Confidence 5678999999999999999999999999987 5678888888888 899999 799999999998874
No 195
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.17 Score=52.34 Aligned_cols=185 Identities=17% Similarity=0.195 Sum_probs=116.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
..-....-+..+.+...|+-|..+-..- ..+.+....+.+.+ +..+.+.|++++|...|-+-+.. +.|+
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~-------~~d~d~~~~i~~kY---gd~Ly~Kgdf~~A~~qYI~tI~~-le~s 401 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQ-------HLDEDTLAEIHRKY---GDYLYGKGDFDEATDQYIETIGF-LEPS 401 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhc-------CCCHHHHHHHHHHH---HHHHHhcCCHHHHHHHHHHHccc-CChH
Confidence 3444556788888888888888764332 12333333333310 01466899999999988777642 1232
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
.++.-|....++..-..+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..
T Consensus 402 -----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~I 472 (933)
T KOG2114|consen 402 -----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEI 472 (933)
T ss_pred -----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHH
Confidence 3455666777777888888888888864 45555778999999999998888877655 3321 1113445566
Q ss_pred HHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 285 YCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
+.+.+-.++|..+-.+... +......+ +-..+++++|.+++..+.
T Consensus 473 lr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 473 LRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 6666667777665544432 22222333 345678888888887653
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.27 E-value=0.0011 Score=46.25 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=37.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 526 LINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
+...+.+.|++++|.+.|+.+++.. +-+...+..+..++...|++++|..+|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666777777777777777553 224456666777777777777777777777644
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.26 E-value=0.0078 Score=55.26 Aligned_cols=100 Identities=9% Similarity=-0.041 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC--CCCCH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG--FQPSI 205 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~ 205 (609)
.|...+..+.+.|++++|...|+.+++.++..+.....+..+.. .|...|++++|+..|+.+.+.- .+...
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~-------~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQ-------LNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 34444444466788888888888888775544444556666666 7888888888888888887632 12234
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
.++-.+...+...|+.++|..+|+++.+.
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555556666777777777777777664
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.25 E-value=0.0015 Score=46.01 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=29.5
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
..|++++|++.|+.+... .|.+..+...+.. +|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~-------~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQ-------CYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHH-------HHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHH
Confidence 455666666666666554 3445555555555 566666666666666666553
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.23 E-value=0.005 Score=57.61 Aligned_cols=110 Identities=18% Similarity=0.149 Sum_probs=60.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHH--hhC--CC-CCCHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSI----VSCNFLLNGLLKLNCIDQCWQVYEEM--GRI--GI-CPNTHTFNILTHV 249 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m--~~~--~~-~~~~~~~~~l~~~ 249 (609)
-+++.|+.+..+.+|+.+++.| ..|. ..|..|.++|.-.+++++|+++...= ..+ |- .-...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 6889999999999999999877 2332 24556666677777788887764321 110 10 1122333445555
Q ss_pred HHHcCChHHHHHHHHH----HHHcCCC-CCHHhHHHHHHHHHhcC
Q 037911 250 FCKNGDVDKVNGFLEK----IEEEGFD-PDLVTYNTLISSYCKKG 289 (609)
Q Consensus 250 ~~~~g~~~~a~~~~~~----~~~~~~~-~~~~~~~~li~~~~~~g 289 (609)
+--.|.+++|.....+ ..+.|-+ .....+..+...|...|
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG 149 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence 5566677776654332 2222211 12334455555665544
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.16 E-value=0.0056 Score=56.17 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=76.6
Q ss_pred cCCChhHHHHHHHHhhhcCCCC-CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHH
Q 037911 102 CQSDSVSALTFFNWVKNDLEIK-PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (609)
..++++.|...|+...+..... ..+.++..++.+|...|++++|...|+.+++..++.+...+.+..++. .|
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~-------~~ 227 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV-------IM 227 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH-------HH
Confidence 3589999999999998753222 235789999999999999999999999999887777777777777777 78
Q ss_pred HHhCCHHHHHHHHHHHHhC
Q 037911 181 VKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~ 199 (609)
...|+.++|..+|+++++.
T Consensus 228 ~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 228 QDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999875
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.12 E-value=0.002 Score=44.81 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=33.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
++..+...|++++|.+.|+++++. .|.+...+..+.. .+...|++++|+..|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~-------~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGR-------ILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHH-------HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666643 3455566666655 56666666666666666654
No 202
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.07 E-value=0.29 Score=46.48 Aligned_cols=109 Identities=15% Similarity=0.104 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 037911 417 IYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFC 496 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 496 (609)
+.+..+.-+...|+...|.++-.+.. .|+-..|...+.+++..++|++-.++... + -.+.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 44445666667777666666655542 47888888899999999999887776432 1 23477888888888
Q ss_pred cCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 037911 497 GIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGF 545 (609)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 545 (609)
+.|+..+|..+...+ + + ..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 899999988888773 1 1 3456778888998888776543
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.07 E-value=0.17 Score=48.47 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---------CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 037911 463 CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG---------IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCME 533 (609)
Q Consensus 463 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 533 (609)
.|+.++|+.++..+......+++.+|..+...|.. ....++|+..|.+.-+. .|+...-..++..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHc
Confidence 45555555555554433333555555555544321 12356677777766643 34444332333333333
Q ss_pred CC----HHHHHHHH----HHHHHcCC---CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 534 KD----VNKAEALL----GFFAKKFQ---IYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 534 g~----~~~A~~~~----~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
|. -.+..++- ..+.++|. ..+-.-+..++.+..-.|+.++|.+..++|.+.
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 32 11222222 12223333 223334566677777788888888888888755
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.05 E-value=0.0028 Score=44.76 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 037911 520 SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDG-DLSKLMELQKRFLR 583 (609)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 583 (609)
..+|..+...+...|++++|+..|++.++.. +.++..|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4456666666666666666666666666552 223455666666666666 56666666666654
No 205
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.03 E-value=0.22 Score=44.42 Aligned_cols=84 Identities=18% Similarity=0.080 Sum_probs=54.5
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..+..-+....+.|++++|.+.|+.+..+.+..|-...+...++- ++.+.+++++|+..+++.+..-.....
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~y-------A~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAY-------AYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHH-------HHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 3344444555567788888888888888776655666666666666 777888888888888877764322223
Q ss_pred HHHHHHHHHHH
Q 037911 206 VSCNFLLNGLL 216 (609)
Q Consensus 206 ~~~~~ll~~~~ 216 (609)
..|-.-|.+++
T Consensus 107 ~dY~~YlkgLs 117 (254)
T COG4105 107 ADYAYYLKGLS 117 (254)
T ss_pred hhHHHHHHHHH
Confidence 34555555554
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.22 Score=44.16 Aligned_cols=143 Identities=8% Similarity=-0.057 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----
Q 037911 417 IYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALI---- 492 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li---- 492 (609)
..+.++..+.-.|.+.-...++++.++...+.++.....|++.-.+.|+.+.|...|++..+..-+.|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4555666666667777777777777776666677777778887788888888888888776543334444444333
Q ss_pred -HHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037911 493 -CCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVF 562 (609)
Q Consensus 493 -~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 562 (609)
..|.-.+++.+|...+.++.... ..|....|.-.-+..-.|+..+|.+.++.+... .|...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 23445667777777777776543 334444454444455567778888888777765 55555444443
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.043 Score=49.90 Aligned_cols=101 Identities=11% Similarity=0.119 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHhH
Q 037911 202 QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN---GDVDKVNGFLEKIEEEGFDPDLVTY 278 (609)
Q Consensus 202 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~ 278 (609)
+-|...|-.|..+|...|+++.|...|.+..+.. .++...+..+..++... ....++..+|+++.... +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4566666666666666666666666666665531 34455555555544333 12456666666666553 2244555
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 279 NTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55556666677777777777766664
No 208
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.93 E-value=0.83 Score=49.64 Aligned_cols=327 Identities=16% Similarity=0.126 Sum_probs=156.1
Q ss_pred HHHHhCCHHHHHHHHHHHHh-CC--CCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLD-VG--FQPSIVSCNFLLNGLLK-LNCIDQCWQVYEEMGRIGICPNTHT--FNILTHVFCK 252 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~ 252 (609)
-+...+++.+|+++.++-+- .+ +.-+...+-.-+.++.+ .++.+-...++-.+...++.-+.+. +.+-...|..
T Consensus 686 ~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~~~~ 765 (1265)
T KOG1920|consen 686 TLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQVYMS 765 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccceeEEe
Confidence 67788888888777665431 11 11122333333334443 3444545555555543222111110 0000011111
Q ss_pred c----CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--CHhHHHHHHHHHhhCCccCCHhh----------HHHH
Q 037911 253 N----GDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKG--RLNDAFYLYRIMYRRNVLPDLVT----------YTTL 316 (609)
Q Consensus 253 ~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~----------~~~l 316 (609)
. ..++..-+.+....... .|+ .....+|.+|.+.+ .+++|+....+.......++... -+.+
T Consensus 766 r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~l 843 (1265)
T KOG1920|consen 766 RDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNEL 843 (1265)
T ss_pred ccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHH
Confidence 1 12333333333333332 344 45556778888887 68888887777764211111100 0112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------HcCChHHHHHHHHHHHHCCCccCHHHH
Q 037911 317 MNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYC-------------KEGKMQESKSLLYEMMGNGIYPDTFTC 383 (609)
Q Consensus 317 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------------~~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (609)
.+.....-|++-|..+-+.- ..|+.-|-.++.-+- ..++++.|+..+.++- ...|
T Consensus 844 fn~ALgtYDl~Lal~VAq~S-----qkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~-------~~~~ 911 (1265)
T KOG1920|consen 844 FNSALGTYDLDLALLVAQKS-----QKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG-------ETYF 911 (1265)
T ss_pred HHhhhcccchHHHHHHHHHh-----ccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC-------cccc
Confidence 22222222233332222211 113333322222221 1244455554444432 1123
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037911 384 QIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYL----IVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMES 459 (609)
Q Consensus 384 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (609)
.-.++.--+.|-+.+|+.++ .|+...+..+ ..-+.....+++|.-+|+...+ ..-.+.+
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a 974 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKA 974 (1265)
T ss_pred HHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHH
Confidence 33344445566666666666 3455444443 3444556667777777666522 1234566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 037911 460 LCKCDSVADALLLKDEMVDRNIKPSLS--TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVN 537 (609)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 537 (609)
|...|+|.+|+.+..++... -|.. +-..|+.-+...++.-+|-++..+... .|. -.+..+++...++
T Consensus 975 ~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 975 YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEWE 1043 (1265)
T ss_pred HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHHH
Confidence 77778888888777666431 1211 124566667777888888887777753 121 2344556666788
Q ss_pred HHHHHHHHHH
Q 037911 538 KAEALLGFFA 547 (609)
Q Consensus 538 ~A~~~~~~~~ 547 (609)
+|.++.....
T Consensus 1044 eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1044 EALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhcc
Confidence 8887765544
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.87 E-value=0.0076 Score=43.07 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=42.1
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 037911 528 NGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKY 595 (609)
Q Consensus 528 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 595 (609)
..|.+.+++++|.++++.+...+ +.++..|.....++.+.|++++|.+.+++.++. .|+..+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHHH
Confidence 45666777777777777777653 234456666777777777777777777777744 555544433
No 210
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.76 Score=47.26 Aligned_cols=359 Identities=13% Similarity=0.077 Sum_probs=196.7
Q ss_pred HHHHhCCHHHHHHHHHHHH--------hCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTL--------DVGFQPSIVSCN-----FLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNI 245 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 245 (609)
++.+..+.++-..+.+.+. .-|++.+..-|. .+++-+...+.+..|+++-+-+...-..- ...|..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 4445556666655554443 355666666554 35666777788888988888775421111 456666
Q ss_pred HHHHHHHcCC---hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCcc----CCHhhHHHHHH
Q 037911 246 LTHVFCKNGD---VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVL----PDLVTYTTLMN 318 (609)
Q Consensus 246 l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~ll~ 318 (609)
...-+.+..+ -+-+..+-+++... . .....|..+.+-....|+.+-|..+++.=...+.. .+..-+...+.
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 6666655532 22222333333322 2 34556777777777889998888887643322211 12233444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHH
Q 037911 319 GLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLS 398 (609)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (609)
-+.+.|+.+....++-.+..+ .+...+. .-..+.-.|..+|.+..++. |..+ +-+.| +.++-.+
T Consensus 555 kaies~d~~Li~~Vllhlk~~---~~~s~l~------~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y-~q~dn~~ 618 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLKNK---LNRSSLF------MTLRNQPLALSLYRQFMRHQ---DRAT---LYDFY-NQDDNHQ 618 (829)
T ss_pred HHHhcCCchhHHHHHHHHHHH---HHHHHHH------HHHHhchhhhHHHHHHHHhh---chhh---hhhhh-hcccchh
Confidence 556666666666666555543 0111111 11233445556665554431 1111 11112 2222222
Q ss_pred HHHHHH--HHHH----CCCCCCHHHHHHHHHHHHhcCCh---HHHH-------HHHHHH-HhCCCCCCHHHHHHHHHHHH
Q 037911 399 ALNLVV--ELQR----FGVSISRDIYDYLIVALCQDNRP---FAAT-------SLLERI-GQDGYVPSLEIYNELMESLC 461 (609)
Q Consensus 399 A~~~~~--~~~~----~~~~~~~~~~~~ll~~~~~~~~~---~~a~-------~~~~~~-~~~~~~~~~~~~~~l~~~~~ 461 (609)
++..|. .... .+..|+ ......++.+.... .++. .+.+.+ .+.+..-...+.+--+.-+.
T Consensus 619 ~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li 695 (829)
T KOG2280|consen 619 ALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLI 695 (829)
T ss_pred hhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHH
Confidence 222211 1000 111222 22233333333221 1111 122222 22232233344555566677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 037911 462 KCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEA 541 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 541 (609)
..|+..+|.++-.+..- ||-..|..-+.+++..+++++-+++-+.+. ++.-|.-...+|.+.|+.++|.+
T Consensus 696 ~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 696 LIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhh
Confidence 77999999988776643 888889888999999999988777766653 24557778899999999999999
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 037911 542 LLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQ 578 (609)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (609)
++.+... +...+.+|.+.|++.+|.+.-
T Consensus 766 Yiprv~~---------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 766 YIPRVGG---------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence 8865432 226778888999998887653
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.80 E-value=0.11 Score=52.01 Aligned_cols=257 Identities=15% Similarity=0.093 Sum_probs=131.6
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHH---------HHHhhCCccCCHhhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCC
Q 037911 275 LVTYNTLISSYCKKGRLNDAFYLY---------RIMYRRNVLPDLVTYTTLMNGLCKEGKV--REAHQLFHRMVHRGLSP 343 (609)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~---------~~~~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~g~~p 343 (609)
.+.+.+-+..|...|.+++|.++- +.+.... .+.-.++..=++|.+..+. -+...-+++++++|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 334445555677777777776541 1111110 0222233444455554443 23444456677778777
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 344 DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFT---CQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDY 420 (609)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 420 (609)
+.... ...++-.|++.+|.++|.+--..+-.....| .--..+-+...|..++-..+.++-.+-. -+..--..
T Consensus 634 ~~iLl---A~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePka 708 (1081)
T KOG1538|consen 634 NDLLL---ADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKA 708 (1081)
T ss_pred hHHHH---HHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHH
Confidence 76533 3445566788888887754321100000000 0111233444444444443333321110 00011122
Q ss_pred HHHHHHhcCChHHHHHHHH---------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037911 421 LIVALCQDNRPFAATSLLE---------RIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRAL 491 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 491 (609)
....+...|+...|..+.- ++...--..+..+...+...+.+...+.-|-++|..|-+. ..+
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksi 779 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSL 779 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHH
Confidence 3344555566555554321 1111111223445555555566677777788888777542 345
Q ss_pred HHHHhcCCCHhHHHHHHHHHHHCCCCCCHHH-----------HHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 492 ICCFCGIGRSGEAVSLMDEMLESGMLPDSQI-----------CRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
++.+...+++.+|..+-+...+ +.||... |.-.-.+|.+.|+-.+|..+++++...
T Consensus 780 VqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 6667788888888888777653 3344321 344456778888888888888877654
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.75 E-value=0.06 Score=44.85 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 208 CNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIE 267 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 267 (609)
...++..+...|++++|..+++.+.... +.|...|..+|.+|...|+...|.+.|+.+.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3344445555566666666666555532 3345555556666666666666666555543
No 213
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.023 Score=50.96 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=77.6
Q ss_pred CCChhHHHHHHHHhhhc-CCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHH
Q 037911 103 QSDSVSALTFFNWVKND-LEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYV 181 (609)
Q Consensus 103 ~~~~~~A~~~f~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (609)
.|++..|..-|..-++. ++-.-.+.++.+|...+..+|++++|...|..+.+..+..|..++.+..+.. ...
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~-------~~~ 226 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV-------SLG 226 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH-------HHH
Confidence 46899999988877764 3333478899999999999999999999999999998888888888888888 889
Q ss_pred HhCCHHHHHHHHHHHHhC
Q 037911 182 KVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~ 199 (609)
+.|+.++|..+|+++.+.
T Consensus 227 ~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 227 RLGNTDEACATLQQVIKR 244 (262)
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 999999999999999874
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.68 E-value=0.66 Score=44.70 Aligned_cols=145 Identities=16% Similarity=0.194 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRN-IKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQI-CRVLIN 528 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~ 528 (609)
.+|-..+....+..-++.|..+|-+..+.+ +.+++..+++++..++ .|+..-|..+|+--... -||... ..-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345566777777788899999999999887 6678888899988665 57888899999876653 344444 456677
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCC--hhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 529 GYCMEKDVNKAEALLGFFAKKFQIYD--TESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
.+...++-+.|..+|+..+..- ..+ ...|..++.--..-|+...+..+=++|.+. .|-..+......-+.
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 7888899999999999666432 122 367999999888999999999999999855 777766666665554
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.64 E-value=0.19 Score=41.69 Aligned_cols=87 Identities=14% Similarity=-0.026 Sum_probs=52.6
Q ss_pred HhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 037911 495 FCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKL 574 (609)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 574 (609)
+...|++++|..+|.-+...+ .-+..-+..|..++-..+++++|...+....... .-|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 345667777777666665543 2244455666666666667777777666555443 23444455566666667777777
Q ss_pred HHHHHHHHH
Q 037911 575 MELQKRFLR 583 (609)
Q Consensus 575 ~~~~~~m~~ 583 (609)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 776666664
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.64 E-value=0.014 Score=41.66 Aligned_cols=56 Identities=16% Similarity=0.360 Sum_probs=29.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 134 HILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 134 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
+++.+.+++++|.++++.++.. .|.+...+..... .|.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~-------~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL---DPDDPELWLQRAR-------CLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHH-------HHHHhccHHHHHHHHHHHHHH
Confidence 3455555555555555555544 2334444444444 555555555555555555553
No 217
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.63 E-value=0.11 Score=51.76 Aligned_cols=169 Identities=15% Similarity=0.134 Sum_probs=111.7
Q ss_pred CCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHH
Q 037911 89 HLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQD 168 (609)
Q Consensus 89 ~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 168 (609)
.++...+.-.+.-.++|++.+++..+...--+.+ ...-...+++-+.+.|..+.|+.+.++-..+ |.
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r----------Fe- 326 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDHR----------FE- 326 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH----------HH-
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHHH----------hH-
Confidence 3455555555666678999877777522211112 2556788999999999999998876544332 22
Q ss_pred HhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 037911 169 LISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTH 248 (609)
Q Consensus 169 l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 248 (609)
...+.|+++.|.++.++ ..+...|..|.....+.|+++-|.+.|.+... +..|+-
T Consensus 327 ----------LAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~l 381 (443)
T PF04053_consen 327 ----------LALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLL 381 (443)
T ss_dssp ----------HHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHH
T ss_pred ----------HHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHH
Confidence 34588999999887664 34677999999999999999999999998653 456777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIM 301 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 301 (609)
.|.-.|+.++..++.+.....|- +|....++.-.|+.++..+++.+.
T Consensus 382 Ly~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 382 LYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 78889999999888888877652 455556666678888888877654
No 218
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.60 E-value=0.76 Score=44.43 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=48.8
Q ss_pred HHHhCCChhHHHHHHHHHHHhhCCC-CCcHH-hHHHHhhcc---ccchhHHHHhCCHHHHHHHHHHHHhC----CCCCCH
Q 037911 135 ILAWNNKFSFAMKMLCELVELVKDC-PHSVD-VFQDLISCT---EDCNWAYVKVGLIRESFKTFRKTLDV----GFQPSI 205 (609)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~-~~~~l~~~~---~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~ 205 (609)
...+.+.+++|.+.+........+. ++--+ -+..++... ......+...|++.++..+++++... ...-+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 3467788888888887766542222 11111 011111100 00111788999999999999988763 344788
Q ss_pred HHHHHHHHHHHh
Q 037911 206 VSCNFLLNGLLK 217 (609)
Q Consensus 206 ~~~~~ll~~~~~ 217 (609)
.+||.++-.+.+
T Consensus 168 d~yd~~vlmlsr 179 (549)
T PF07079_consen 168 DMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHHhH
Confidence 899986555543
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.60 E-value=0.0069 Score=44.00 Aligned_cols=66 Identities=14% Similarity=0.320 Sum_probs=51.3
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC----cHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH----SVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
..+|+.+..+|...|++++|+..++++++.....++ ...++..+.. .|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~-------~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGE-------CYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH-------HHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHh
Confidence 457889999999999999999999999876322222 2345566666 89999999999999998765
No 220
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.58 E-value=0.11 Score=41.83 Aligned_cols=64 Identities=6% Similarity=-0.004 Sum_probs=53.6
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHH
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKP-TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVD 164 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 164 (609)
...|++..|.+.|+.+..+..+.+ ...+...++.++.+.|++++|...++++++..+.+|....
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 345899999999999998765554 6788889999999999999999999999999766654443
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.42 E-value=0.0077 Score=43.74 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=34.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcC----C-CCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 522 ICRVLINGYCMEKDVNKAEALLGFFAKKF----Q-IYD-TESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
+++.+...|...|++++|++.+++..+.. . .++ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555566666666666666665554331 0 111 2445666666677777777777766655
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.37 E-value=0.94 Score=42.89 Aligned_cols=314 Identities=16% Similarity=0.144 Sum_probs=200.7
Q ss_pred cCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHH--HhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhH
Q 037911 102 CQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHIL--AWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWA 179 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (609)
.-..|..+.++|+..+++.| |..|-..+ +-.|+-..|.++-.+..+. ...+...+..++.+. +
T Consensus 65 iw~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l---lssDqepLIhlLeAQ-----a 129 (531)
T COG3898 65 IWESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL---LSSDQEPLIHLLEAQ-----A 129 (531)
T ss_pred HHhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh---hhccchHHHHHHHHH-----H
Confidence 33578889999998887554 44444444 4568888898887776643 223334444444421 4
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVS--CNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVD 257 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (609)
-.-.|++++|.+-|+.|.+ .|.... ...|.-.--+.|..+.|...-++.-..- +.-.+.+...+...|..|+++
T Consensus 130 al~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 5578999999999999986 233332 2233333356789999999888876542 334678888999999999999
Q ss_pred HHHHHHHHHHHcC-CCCCHH--hHHHHHHHHH---hcCCHhHHHHHHHHHhhCCccCCHhh-HHHHHHHHHhcCCHHHHH
Q 037911 258 KVNGFLEKIEEEG-FDPDLV--TYNTLISSYC---KKGRLNDAFYLYRIMYRRNVLPDLVT-YTTLMNGLCKEGKVREAH 330 (609)
Q Consensus 258 ~a~~~~~~~~~~~-~~~~~~--~~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~ 330 (609)
.|+++++.-.... +.++.. .-..|+.+-. -.-+...|.+.-.+..+ +.||..- -......+.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 9999998766542 233332 1222332211 12345666666555544 3455332 223456788999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCcc-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 331 QLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN-GIYP-DTFTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 331 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
.+++.+=+....|+. + .+..+.+.|+. +..-++...+. ..+| +......+..+-...|++..|..--+....
T Consensus 284 ~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 284 KILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred hHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 999999887555543 2 33345566663 33333322211 1233 556677778888889999888776666555
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 037911 409 FGVSISRDIYDYLIVALCQD-NRPFAATSLLERIGQD 444 (609)
Q Consensus 409 ~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~ 444 (609)
. .|....|..+.+.-... |+-.++...+-+....
T Consensus 358 ~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 E--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred h--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4 67788888888766544 8878888877777554
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.65 Score=40.94 Aligned_cols=211 Identities=12% Similarity=0.062 Sum_probs=104.7
Q ss_pred CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC
Q 037911 122 IKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF 201 (609)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 201 (609)
+..-...|..-..+|...++|++|...+.++.+-+ ..+...|.. ...++.|..+.+++.+.
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~y---EnnrslfhA--------------AKayEqaamLake~~kl-- 87 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGY---ENNRSLFHA--------------AKAYEQAAMLAKELSKL-- 87 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH---HhcccHHHH--------------HHHHHHHHHHHHHHHHh--
Confidence 33445666667778888888998888887777431 122222222 12234444444444431
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CC--CCCHH
Q 037911 202 QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE---GF--DPDLV 276 (609)
Q Consensus 202 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~ 276 (609)
+--+..|+-....|...|..+.|-..+++.-+ ..+.-+.++|+++|++.... +- +.-..
T Consensus 88 sEvvdl~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~e 151 (308)
T KOG1585|consen 88 SEVVDLYEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFE 151 (308)
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 12223444555667777777776666665433 11223334444444432211 00 01122
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhC----CccCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 037911 277 TYNTLISSYCKKGRLNDAFYLYRIMYRR----NVLPDL-VTYTTLMNGLCKEGKVREAHQLFHRMVHRG---LSPDIVSY 348 (609)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~ 348 (609)
.+...-+.+++..++++|-..+.+-... .-.++. ..|...|-.+.-..++..|.+.++.-.+.+ -.-|..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 2333445556666665554444332211 011111 224444445555667777777777744432 12345566
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 037911 349 NTLIFAYCKEGKMQESKSLL 368 (609)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~ 368 (609)
..|+.+| ..|+.+++..++
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 6677666 456666655544
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.34 E-value=0.14 Score=41.28 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=68.1
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
++..+..-+....+.|+|++|.+.|+.+..+.+..+-....-..++. +|.+.|++++|+..+++.++.....-
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~y-------ayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAY-------AYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 45555566667778899999999999999987777777788888888 89999999999999999998764433
Q ss_pred HHHHHHHHHHHHhc
Q 037911 205 IVSCNFLLNGLLKL 218 (609)
Q Consensus 205 ~~~~~~ll~~~~~~ 218 (609)
-..|...+.+++..
T Consensus 82 ~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 82 NVDYAYYMRGLSYY 95 (142)
T ss_pred CccHHHHHHHHHHH
Confidence 44566666666543
No 225
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=1.8 Score=45.40 Aligned_cols=146 Identities=12% Similarity=0.124 Sum_probs=99.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 037911 131 LIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNF 210 (609)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (609)
..++-|.+.|++++|...|-+.+.. . ..+. ++. -|....+..+-..+++.+.+.|+ .+...-..
T Consensus 373 kYgd~Ly~Kgdf~~A~~qYI~tI~~---l-e~s~----Vi~-------kfLdaq~IknLt~YLe~L~~~gl-a~~dhttl 436 (933)
T KOG2114|consen 373 KYGDYLYGKGDFDEATDQYIETIGF---L-EPSE----VIK-------KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTL 436 (933)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHccc---C-ChHH----HHH-------HhcCHHHHHHHHHHHHHHHHccc-ccchhHHH
Confidence 3456667899999999988887743 1 2222 233 46667778888889999999884 45556678
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 037911 211 LLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGR 290 (609)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 290 (609)
|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++|.-+-.+... +......++ -..|+
T Consensus 437 LLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~n 505 (933)
T KOG2114|consen 437 LLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHN 505 (933)
T ss_pred HHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcC
Confidence 9999999999998888776654 3321 11234566777777777887776665542 334444443 45688
Q ss_pred HhHHHHHHHHHhh
Q 037911 291 LNDAFYLYRIMYR 303 (609)
Q Consensus 291 ~~~a~~~~~~~~~ 303 (609)
+++|++.+..+.-
T Consensus 506 y~eAl~yi~slp~ 518 (933)
T KOG2114|consen 506 YEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHHhcCCH
Confidence 9999999887643
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.29 E-value=0.47 Score=47.72 Aligned_cols=257 Identities=14% Similarity=0.126 Sum_probs=142.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCC
Q 037911 308 PDLVTYTTLMNGLCKEGKVREAHQLF---------HRMVHRGLSPDIVSYNTLIFAYCKEGKM--QESKSLLYEMMGNGI 376 (609)
Q Consensus 308 p~~~~~~~ll~~~~~~~~~~~a~~~~---------~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~ 376 (609)
|....+.+=+-.|...|.+++|.++- +.+... ..+.-.++..=.+|.+..+. -+...-++++.++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 34444555566777888888876532 111111 11333445555666665553 344555677788887
Q ss_pred ccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHH---hCCCCCC
Q 037911 377 YPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVS----ISRDIYDYLIVALCQDNRPFAATSLLERIG---QDGYVPS 449 (609)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~ 449 (609)
.|+.... ...++-.|++.+|-++|.+--..+-. .|...| -..+-+...|..++-..++++-. ..--.|.
T Consensus 632 ~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk 707 (1081)
T KOG1538|consen 632 TPNDLLL---ADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK 707 (1081)
T ss_pred CchHHHH---HHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH
Confidence 7876542 33445566666766666543221100 011111 12334455555444444444331 1111222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH------HHHHCCCC---CCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH
Q 037911 450 LEIYNELMESLCKCDSVADALLLKD------EMVDRNIK---PSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDS 520 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~------~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 520 (609)
+..+.+...|+.++|..+.- .+.+-+-+ .+..+...+...+.+...+.-|-++|..|-+.
T Consensus 708 -----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ 776 (1081)
T KOG1538|consen 708 -----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------ 776 (1081)
T ss_pred -----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence 23445556677777766532 11222222 23344555555566677778888888888421
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhc-----------HHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037911 521 QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTES-----------YNAVFNMFAEDGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 586 (609)
..+++.....+++.+|..+-+..-+. .+|+.. +...-.+|.++|+..||.++++++....+
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 25677788999999999998766543 344321 33344678899999999999999875543
No 227
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.28 E-value=1.2 Score=43.06 Aligned_cols=130 Identities=16% Similarity=0.176 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 037911 416 DIYDYLIVALCQDNRPFAATSLLERIGQDG-YVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTY-RALIC 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~ 493 (609)
.+|...+....+....+.|..+|-+..+.+ ..+++.++++++..++. |+..-|.++|+--... . ||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f-~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-F-PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-C-CCchHHHHHHHH
Confidence 456667777777766788889999997777 56888899999998876 8888899999865543 2 555544 45566
Q ss_pred HHhcCCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 494 CFCGIGRSGEAVSLMDEMLESGMLPD--SQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
-+...++-+.|..+|+..+.. +.-+ ..+|..++..-..-|++..+..+=+.+...
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 677889999999999977653 3333 567888999888899999888888888765
No 228
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.27 E-value=1.1 Score=42.51 Aligned_cols=294 Identities=12% Similarity=0.094 Sum_probs=166.3
Q ss_pred HHHHHHHHHH--hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCHH--hHHH
Q 037911 207 SCNFLLNGLL--KLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVF--CKNGDVDKVNGFLEKIEEEGFDPDLV--TYNT 280 (609)
Q Consensus 207 ~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ 280 (609)
.|..|-.++. -.|+-..|.++-.+..+. +..|....-.++.+- .-.|+.+.|.+-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 3445544443 357777777776665432 344555444444433 3458899999999888853 2221 1222
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH-
Q 037911 281 LISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG-LSPDIVS--YNTLIFAYC- 356 (609)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~--~~~li~~~~- 356 (609)
|.-..-+.|+.+.|.++-++.-..-.. -...+...+...|..|+++.|+++.+.-.+.. +.++..- -..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333334578888888877777655333 24566778888888999999998888776542 3333321 122222211
Q ss_pred --HcCChHHHHHHHHHHHHCCCccCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 037911 357 --KEGKMQESKSLLYEMMGNGIYPDTFT-CQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFA 433 (609)
Q Consensus 357 --~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 433 (609)
-.-+...|...-.+..+ +.||... -..-..++.+.|+..++-.+++.+-+....|+ +.. +....+.|+ .
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--t 310 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--T 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--c
Confidence 11234445544444443 3455433 23334567788888888888888877644443 221 222334443 3
Q ss_pred HHHHHHHH--HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-CCCHhHHHHHHHH
Q 037911 434 ATSLLERI--GQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG-IGRSGEAVSLMDE 510 (609)
Q Consensus 434 a~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~ 510 (609)
+..-+++. ...--+.+......+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++...+-+
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 33333333 1111123445556666777777777777665555544 33667777777665543 4788888888777
Q ss_pred HHHCC
Q 037911 511 MLESG 515 (609)
Q Consensus 511 ~~~~~ 515 (609)
.++..
T Consensus 389 av~AP 393 (531)
T COG3898 389 AVKAP 393 (531)
T ss_pred HhcCC
Confidence 77643
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.24 E-value=0.06 Score=44.84 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=42.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-----hCCCCCCHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMG-----RIGICPNTHTFN 244 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~~~ 244 (609)
.+...|++++|+...+++.... +-+...|..+|.+|...|+...|.+.|+++. +.|+.|+..+-.
T Consensus 71 ~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 71 ALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 5677778888888887777765 6777788888888888888888877777763 347777766543
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.20 E-value=1.3 Score=42.71 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=85.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIG---ICPNTHTFNILTHVFCK---NGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 283 (609)
.++-.|....+++..+++.+.+.... +.-....-....-++-+ .|+.++|++++..+......++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44556777888888888888887631 11111222223334455 7888888888888666555677777777776
Q ss_pred HHHh---------cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC-HH---HHHHHH----HHHHHCC---CCC
Q 037911 284 SYCK---------KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK-VR---EAHQLF----HRMVHRG---LSP 343 (609)
Q Consensus 284 ~~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~---~a~~~~----~~m~~~g---~~p 343 (609)
.|-. ....++|+..|.+.-+.. ||...--.++..+...|. .+ +..++- ....+.| -..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5532 112566666666655432 333322222222222222 11 111211 1111222 123
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037911 344 DIVSYNTLIFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
|...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444555555666666666666666666544
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.14 E-value=0.056 Score=52.48 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcH
Q 037911 483 PSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDS----QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESY 558 (609)
Q Consensus 483 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 558 (609)
.+...++.+..+|.+.|++++|+..|++.++. .|+. ..|..+..+|...|+.++|...+++..+.+ ...|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels----n~~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY----NLKF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----chhH
Confidence 35678999999999999999999999999864 5664 358899999999999999999999999752 1123
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHHcCCC
Q 037911 559 NAVFN--MFAEDGDLSKLMELQKRFLRLGFA 587 (609)
Q Consensus 559 ~~l~~--~~~~~g~~~~A~~~~~~m~~~g~~ 587 (609)
..+.. .+....+.++..++++.+.+.|..
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 21111 112223445677777777776653
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.14 Score=46.02 Aligned_cols=98 Identities=10% Similarity=0.008 Sum_probs=68.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC--CCCCHH
Q 037911 129 YCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG--FQPSIV 206 (609)
Q Consensus 129 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 206 (609)
|+.- -.+.+.|+|.+|...|...++.++..+.....+--|.. ++...|++++|..+|..+.+.- .+.-+.
T Consensus 145 Y~~A-~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe-------~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd 216 (262)
T COG1729 145 YNAA-LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGE-------SLYAQGDYEDAAYIFARVVKDYPKSPKAPD 216 (262)
T ss_pred HHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHH-------HHHhcccchHHHHHHHHHHHhCCCCCCChH
Confidence 4443 34456677888888888888877666666666666777 7888888888888888877632 122345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
.+--|.....+.|+.++|..+|+++.+.
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 6666667777777888888888777664
No 233
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.07 E-value=2.5 Score=44.86 Aligned_cols=192 Identities=14% Similarity=0.178 Sum_probs=112.5
Q ss_pred cCCChhHHHHHHHHhhhcCCCCC--CHHhHHHHHHHHH-hCCChhHHHHHHHHHHHhhCCCCCcHH----hHHHHhhccc
Q 037911 102 CQSDSVSALTFFNWVKNDLEIKP--TSSNYCLIVHILA-WNNKFSFAMKMLCELVELVKDCPHSVD----VFQDLISCTE 174 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 174 (609)
.++-...|++.++-+.++...+| ...++..++++|. ...+++.|+..+++.+..... +.-.+ .-..++.
T Consensus 33 Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~--- 108 (608)
T PF10345_consen 33 YYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLAR--- 108 (608)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHH---
Confidence 33444567888888876555555 5667777888887 668999999999988766322 11111 1112233
Q ss_pred cchhHHHHhCCHHHHHHHHHHHHhC----CCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHH
Q 037911 175 DCNWAYVKVGLIRESFKTFRKTLDV----GFQPSIVSCNFL-LNGLLKLNCIDQCWQVYEEMGRIG---ICPNTHTFNIL 246 (609)
Q Consensus 175 ~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l 246 (609)
.|.+.+... |...+++.++. +..+-...+..+ +..+...++...|.+.++.+...- ..|-...+..+
T Consensus 109 ----i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 109 ----IYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred ----HHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 555555555 88888887652 122223333443 333334478999999988875432 23444455555
Q ss_pred HHHHH--HcCChHHHHHHHHHHHHcCC---------CCCHHhHHHHHHHH--HhcCCHhHHHHHHHHHh
Q 037911 247 THVFC--KNGDVDKVNGFLEKIEEEGF---------DPDLVTYNTLISSY--CKKGRLNDAFYLYRIMY 302 (609)
Q Consensus 247 ~~~~~--~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~ 302 (609)
+.+.. ..+..+.+.+.++.+..... .|...+|..+++.+ ...|+++.+...++++.
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55443 34556677777766633211 23455666666544 45777667766665554
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.06 E-value=0.49 Score=37.25 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 449 SLEIYNELMESLCKCDSVADALLLKDEMVDR 479 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 479 (609)
++...-.+..+|.+.|+..++.+++.+.-+.
T Consensus 119 ~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 119 NPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333333444444444444444444444333
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.05 E-value=0.09 Score=51.08 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=50.7
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcH---HhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSV---DVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
+.++..|+.+..+|...|++++|+..|++.++. .|.+. ..+..+.. +|...|++++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAc-------aya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKAC-------CHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHh
Confidence 446778888888888888888888888888876 23333 23555555 788888888888888888874
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.99 Score=39.86 Aligned_cols=198 Identities=13% Similarity=0.147 Sum_probs=106.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
+|....++++|...+.+..+. ..-+...|. ..+.++.|.-+.++|.+. .--+..|+-....|...|..+.
T Consensus 40 afRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcch
Confidence 788888888888888877641 122222221 123355566666666552 2224455666777888888887
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC---C--ccCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR---N--VLPDLVTYTTLMNGLCKEGKVREAHQLF 333 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 333 (609)
|-..+++.-+. .++-++++|+++|++.... + ...-...+..+-+.+.+...+++|-..+
T Consensus 110 AAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 110 AAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred HHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHH
Confidence 77777765432 2334555566665554321 0 0011223344455666666766665544
Q ss_pred HHHHHC----CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---ccCHHHHHHHHHHHHccCCHHHHHHHH
Q 037911 334 HRMVHR----GLSPDI-VSYNTLIFAYCKEGKMQESKSLLYEMMGNGI---YPDTFTCQIIVQGYGKEGRLLSALNLV 403 (609)
Q Consensus 334 ~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 403 (609)
.+-... .--++. ..|...|-.+.-..++..|...++.--+.+- .-+..+...|+.+| ..|+.+++-+++
T Consensus 174 lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 174 LKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 432211 011121 2344555556666778888888877443321 22445566666665 345666555544
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.99 E-value=0.44 Score=48.34 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHcCChHHH
Q 037911 184 GLIRESFKTFRKTLDVGFQPSIVSCNFL-LNGLLKLNCIDQCWQVYEEMGRIG---ICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 184 g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
...+.|.++++.+.+. -|+...|... .+.+...|++++|++.|++..... -+.....+--+...+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455555555555543 2333333322 234444555555555555433210 011122233344455566666666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHH-HHHHhcCCH-------hHHHHHHHHHhh
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLI-SSYCKKGRL-------NDAFYLYRIMYR 303 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~-------~~a~~~~~~~~~ 303 (609)
.+.|..+.+..-- +...|.-+. .++...|+. ++|.++|++...
T Consensus 325 ~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6666666654211 222222222 333445555 666666666543
No 238
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=2.4 Score=43.84 Aligned_cols=323 Identities=11% Similarity=0.071 Sum_probs=182.0
Q ss_pred hhCCCCCCHHHHHH-----HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--HhHHHHHHHHHhhC
Q 037911 232 GRIGICPNTHTFNI-----LTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGR--LNDAFYLYRIMYRR 304 (609)
Q Consensus 232 ~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~ 304 (609)
...|++.+..-|.. ++.-+...+.+..|+++-..+...-.. ....|.....-+.+..+ -+++++..++-...
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 35577777776654 566677788899999988777533212 15667777777776643 23344444433333
Q ss_pred CccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH
Q 037911 305 NVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGL----SPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT 380 (609)
Q Consensus 305 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (609)
.. -+...|..+.......|+.+.|..+++.=...+. -.+..-+...+.-+.+.|+.+-...++-.+..+ .+.
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 23 2456788888888899999999888764222210 011222333444455566666555555554432 111
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH--HHH-HhCCCCCCHHHHHHHH
Q 037911 381 FTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLL--ERI-GQDGYVPSLEIYNELM 457 (609)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~--~~~-~~~~~~~~~~~~~~l~ 457 (609)
..+... ..+...|..+|.+..+.. +.. .+-..|....+ ..+...+ +.. ......+-........
T Consensus 579 s~l~~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn-~~~~a~~~~q~~~~~~~~~~r~~~lk~~a 645 (829)
T KOG2280|consen 579 SSLFMT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDN-HQALASFHLQASYAAETIEGRIPALKTAA 645 (829)
T ss_pred HHHHHH------HHhchhhhHHHHHHHHhh---chh---hhhhhhhcccc-hhhhhhhhhhhhhhhhhhcccchhHHHHH
Confidence 222221 123445556665554421 111 12222333333 3332222 211 0000112222233344
Q ss_pred HHHHhcCCHH----------HHHHHHHHHHH-CCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037911 458 ESLCKCDSVA----------DALLLKDEMVD-RNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVL 526 (609)
Q Consensus 458 ~~~~~~g~~~----------~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 526 (609)
..+.+..... +-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -||...|-.-
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk 721 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLK 721 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHH
Confidence 4444433311 12223333332 2322333444555556777899999999988884 6899999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 527 INGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
+.+++..+++++-+++-+... .+.-|.-.+.+|.++|+.+||.+++-+..
T Consensus 722 ~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 999999999988776654332 36678999999999999999999998875
No 239
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.90 E-value=0.089 Score=42.02 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=29.7
Q ss_pred CccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 037911 305 NVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR-GLSPDIVSYNTLIFAY 355 (609)
Q Consensus 305 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~ 355 (609)
...|+..+..+++.+|+.+|++..|+++.+...+. +++.+..+|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34566666666666666666666666666665543 4444555555555543
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.87 E-value=0.4 Score=37.73 Aligned_cols=139 Identities=11% Similarity=0.099 Sum_probs=78.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 037911 427 QDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVS 506 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 506 (609)
-.|..++..+++.+...+ .+..-+|.+|--....-+-+-..+.++.+-+. -| ....|+....+.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD----------is~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD----------ISKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-----------GGG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------chhhcchHHHHH
Confidence 345566666666666443 24455555554443333333333333333221 11 122344444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037911 507 LMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 586 (609)
.+-.+ ..++..+...++.....|+-+.-.++...+.+ ...+++...-.+..+|.+.|+..++-++++++.++|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44333 23456667778888999999999999988875 3378888899999999999999999999999999986
Q ss_pred C
Q 037911 587 A 587 (609)
Q Consensus 587 ~ 587 (609)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.38 Score=44.37 Aligned_cols=120 Identities=16% Similarity=0.046 Sum_probs=66.6
Q ss_pred HHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH----H
Q 037911 135 ILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCN----F 210 (609)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~ 210 (609)
.+..+|++.+|...++++++. .|.+.-.....-. ++.-.|+.+.-...+++++..- .++...|. .
T Consensus 112 i~~~~g~~h~a~~~wdklL~d---~PtDlla~kfsh~-------a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~Gm 180 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD---YPTDLLAVKFSHD-------AHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGM 180 (491)
T ss_pred HhhccccccHHHHHHHHHHHh---Cchhhhhhhhhhh-------HHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHH
Confidence 344556666666666666654 3444433333333 5566666666666666665431 23332222 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 211 LLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKI 266 (609)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 266 (609)
+.-++...|-+++|.+.-++..+.+ +.|...-..+.+.+-..|++.++.+++.+-
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 2234455666777776666665543 345556666666666666666666665543
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.29 Score=46.57 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=17.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHh
Q 037911 133 VHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
.+.|.+.|+|..|...|+.++..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~ 237 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF 237 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH
Confidence 45677888888888888887654
No 243
>PRK15331 chaperone protein SicA; Provisional
Probab=95.76 E-value=0.17 Score=41.98 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=19.6
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHH
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELV 153 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 153 (609)
|+++.|..+|+.+..- .+.++.-|..|+.++-..+++++|...|....
T Consensus 51 Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 51 GRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred CCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444421 11133333444444444444444444444433
No 244
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.69 E-value=1.9 Score=40.48 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=28.6
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC-CHHHHHHHHHHHHh
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG-LIRESFKTFRKTLD 198 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~ 198 (609)
++|+++.|..++.++..... ..++.....+...+-..+......+ ++++|..++++..+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~--~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN--SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh--cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 45666666666666654421 1112222222221111111445566 88888888777654
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.68 E-value=0.21 Score=39.89 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH
Q 037911 447 VPSLEIYNELMESLCKCDSVADALLLKDEMVDR-NIKPSLSTYRALI 492 (609)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li 492 (609)
.|+..+..+++.+|+..|++..|+++.+.+.+. ++..+..+|..|+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344455555555555555555555555444422 3333444444444
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.68 E-value=0.41 Score=37.50 Aligned_cols=98 Identities=19% Similarity=0.151 Sum_probs=69.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCC-CcHHhHHHHhhc
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCP-HSVDVFQDLISC 172 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 172 (609)
.+.+|.....++.+.|++.|..++.- .+..+..|+.-..++.-+|+.++|..-+++.++..++.. .....|..-..
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~- 123 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL- 123 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH-
Confidence 45566677778888999999888752 334677888888898888999999888888888733221 11112222222
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhCC
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 200 (609)
.|...|+.+.|..-|+..-+.|
T Consensus 124 ------lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 124 ------LYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred ------HHHHhCchHHHHHhHHHHHHhC
Confidence 6778888888888888887766
No 247
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.57 E-value=4.2 Score=44.58 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037911 348 YNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQ 427 (609)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 427 (609)
|.+...-+.....+++|.-.|+..-+ ..-.+.+|...|+|.+|+.+..++...... -..+-..|+.-+..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHH
Confidence 33334444556677777666654422 233456777788888888877766432100 11122456677777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 428 DNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDE 475 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
.+++.+|.+++.+.... ....+..|++...|++|.++...
T Consensus 1012 ~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred cccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 88888888887776432 12234456666677777665443
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.57 E-value=1.1 Score=36.90 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=20.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037911 386 IVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDN 429 (609)
Q Consensus 386 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 429 (609)
++..+.+.+.......+++.+...+. .+....+.++..|++.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD 55 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC
Confidence 34444444445555555555544432 34445555555555443
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.53 E-value=0.5 Score=47.20 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYC 286 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 286 (609)
..+.++..+-+.|..+.|+++-.+-. .-.....+.|+++.|.++.++. .+...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35556666666666666665433211 1223344556666665554432 24455666666666
Q ss_pred hcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 037911 287 KKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKS 366 (609)
Q Consensus 287 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 366 (609)
..|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+....+| -++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 66666666665554432 3344445555555555555555555443 13333334444455555555
Q ss_pred HH
Q 037911 367 LL 368 (609)
Q Consensus 367 ~~ 368 (609)
++
T Consensus 424 lL 425 (443)
T PF04053_consen 424 LL 425 (443)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.48 E-value=2.2 Score=39.96 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCChHHH---HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037911 417 IYDYLIVALCQDNRPFAA---TSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALIC 493 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 493 (609)
++..++.++...+..+.. ..+++.+... .+..+.++..-++.+.+.++.+++.+.+.+|+..-. -....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHHHH
Confidence 455555666665554433 3333444222 222344454555666667777777777777776421 12233444443
Q ss_pred HHh--cCCCHhHHHHHHHHHHHCCCCCCHH-HHH----HHHHHHHccCC------HHHHHHHHHHHHHcCC-CCChhcHH
Q 037911 494 CFC--GIGRSGEAVSLMDEMLESGMLPDSQ-ICR----VLINGYCMEKD------VNKAEALLGFFAKKFQ-IYDTESYN 559 (609)
Q Consensus 494 ~~~--~~g~~~~A~~~~~~~~~~~~~p~~~-~~~----~l~~~~~~~g~------~~~A~~~~~~~~~~~~-~~~~~~~~ 559 (609)
.+. .......|...+..++...+.|... ... ..+......++ ++....+++...+... +.+..+-.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 331 1233355666666666554555443 111 11111222222 4444444543332222 33333322
Q ss_pred HH-------HHHHHhcCCHHHHHHHHHHHH
Q 037911 560 AV-------FNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 560 ~l-------~~~~~~~g~~~~A~~~~~~m~ 582 (609)
++ +..+.+.+++++|.++|+-.+
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 234667889999999998654
No 251
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.45 E-value=0.13 Score=46.00 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC
Q 037911 292 NDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK 325 (609)
Q Consensus 292 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 325 (609)
+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3456667777777777776666666666666554
No 252
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.43 E-value=3.4 Score=41.75 Aligned_cols=393 Identities=12% Similarity=0.064 Sum_probs=184.4
Q ss_pred hHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCh
Q 037911 143 SFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLL-KLNCI 221 (609)
Q Consensus 143 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~ 221 (609)
+.++.+++.++.. .|.-...|..... .=.+.|..+++.++|++.+. |++.++..|...+..+. ..|+.
T Consensus 62 ~~~r~~y~~fL~k---yPl~~gyW~kfA~-------~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~ 130 (577)
T KOG1258|consen 62 DALREVYDIFLSK---YPLCYGYWKKFAD-------YEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDP 130 (577)
T ss_pred HHHHHHHHHHHhh---CccHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCH
Confidence 4566666766644 4444555555544 45678888888888888876 56677777776665443 45777
Q ss_pred HHHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh---c------CC
Q 037911 222 DQCWQVYEEMGRI-GIC-PNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK---K------GR 290 (609)
Q Consensus 222 ~~a~~~~~~m~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~------g~ 290 (609)
+.....|+..... |.. .+...|...|..-..++++.....+++.+++. ....|+..-.-|.+ . ..
T Consensus 131 ~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~ 206 (577)
T KOG1258|consen 131 ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLS 206 (577)
T ss_pred HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcC
Confidence 7777777777553 221 23445666666666677788888888887764 12223222222211 1 12
Q ss_pred HhHHHHHHHHHhhC----CccCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 291 LNDAFYLYRIMYRR----NVLPDLVTYTTLMNGLCK-EGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESK 365 (609)
Q Consensus 291 ~~~a~~~~~~~~~~----~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 365 (609)
.+++.++-...... ...+....+..-+..-.. .+..+++..+..+.. ...-.++...-...+..
T Consensus 207 ~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr 275 (577)
T KOG1258|consen 207 IDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKR 275 (577)
T ss_pred HHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHH
Confidence 23332222222110 000000111111100000 011111111111111 00111122222233333
Q ss_pred HHHHHHHHCC---C----ccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037911 366 SLLYEMMGNG---I----YPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLL 438 (609)
Q Consensus 366 ~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 438 (609)
..++.-++.- + .++..+|+..+..-.+.|+.+.+.-+++...--- ..-...|-..+.-....|+.+-+..++
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 3333333221 1 2245667777777777777777777776654310 111223333333334446656555555
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCCHhHHH---HHHHHHH
Q 037911 439 ERIGQDGY--VPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLST-YRALICCFCGIGRSGEAV---SLMDEML 512 (609)
Q Consensus 439 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~---~~~~~~~ 512 (609)
....+-.. .|....+.+.+ .-..|+++.|..+++.+.+.- |+..- -..-+....+.|+.+.+. +++....
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~ 430 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIY 430 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc
Confidence 54432222 23333333322 223467777777777776542 44322 112223344566666666 3333333
Q ss_pred HCCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037911 513 ESGMLPDSQICRVLING-----YCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDG 569 (609)
Q Consensus 513 ~~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 569 (609)
... -+..+...+.-- +.-.++.+.|..++.++.+.. +++...|..+++.....+
T Consensus 431 ~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 431 EGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred ccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 211 122222222111 223467777777777776542 344456666666655444
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.36 E-value=3.7 Score=41.76 Aligned_cols=118 Identities=17% Similarity=0.082 Sum_probs=71.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHhcCCHHH
Q 037911 393 EGRLLSALNLVVELQRFGVSISRDIYDYL-IVALCQDNRPFAATSLLERIGQD--GY-VPSLEIYNELMESLCKCDSVAD 468 (609)
Q Consensus 393 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
....+.|.+++..+.+. -|+...|... .+.+...|++++|...+++.... .. ......+-.+.-.+.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34566677777777665 3444444333 34555667777777777754321 11 1223445556666777899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHhcCCCH-------hHHHHHHHHHHH
Q 037911 469 ALLLKDEMVDRNIKPSLSTYRALI-CCFCGIGRS-------GEAVSLMDEMLE 513 (609)
Q Consensus 469 A~~~~~~~~~~~~~p~~~~~~~li-~~~~~~g~~-------~~A~~~~~~~~~ 513 (609)
|.+.|..+.+.+- -....|..+. .++...|+. ++|.+++.++..
T Consensus 324 A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999987542 2334444443 334566777 788888877654
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.32 E-value=0.07 Score=33.38 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHh
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLI 170 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (609)
..|..+...|.+.|++++|+++|+++++. .|.+...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~---~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL---DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCCHHHHHHhh
Confidence 56888999999999999999999999987 566677665554
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.29 E-value=2.1 Score=38.45 Aligned_cols=58 Identities=12% Similarity=-0.002 Sum_probs=41.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCh----hcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 525 VLINGYCMEKDVNKAEALLGFFAKKFQIYDT----ESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.+.+.|.+.|.+..|..-++.+.+.. |+. ..+-.+..+|...|-.++|.+.-+-+..+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y--~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENY--PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 45677788888888888888888762 222 34556667788888888887777666544
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.25 E-value=0.82 Score=35.93 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=74.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC---CCCCCHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV---GFQPSIVSCN 209 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~ 209 (609)
.-+++..|+.+.|++.|.+.+.. .|.....|+.-.. ++.-.|+.++|++-+++.++. .-+.--.+|-
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQ-------a~RLq~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL---APERASAYNNRAQ-------ALRLQGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh---cccchHhhccHHH-------HHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 45678889999999999999876 6677888888888 899999999999999988762 1455666777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIG 235 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~ 235 (609)
.-...|...|+-+.|..=|+...+.|
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 77777888888888888887776655
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=2.5 Score=38.74 Aligned_cols=142 Identities=12% Similarity=0.116 Sum_probs=82.0
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.....|++.+|...|....+.. +-+...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4677888888888888887754 334556666778888888888888888876543111111121223344444444444
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC--CccCCHhhHHHHHHHHHhcC
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR--NVLPDLVTYTTLMNGLCKEG 324 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~ 324 (609)
...+-...-.. +-|...-..+...+...|+.+.|++.+-.+..+ |.. |...-..++..+.-.|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44444444332 225555566666777777777777666555543 222 3344445555554444
No 258
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.07 E-value=0.79 Score=43.05 Aligned_cols=130 Identities=18% Similarity=0.278 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHHcCC-
Q 037911 186 IRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK--LN----CIDQCWQVYEEMGRIGI---CPNTHTFNILTHVFCKNGD- 255 (609)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~g~- 255 (609)
+++.+.+++.+.+.|+..+..+|-+..-.+.. .. ....|.++|+.|++... .++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45556778888888888887666553333332 22 25678889999987542 2445555555443 3333
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHH--hHHHHHHHHHhcCC--HhHHHHHHHHHhhCCccCCHhhHHHHH
Q 037911 256 ---VDKVNGFLEKIEEEGFDPDLV--TYNTLISSYCKKGR--LNDAFYLYRIMYRRNVLPDLVTYTTLM 317 (609)
Q Consensus 256 ---~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~ll 317 (609)
.+.++.+|+.+.+.|+..+.. ....++........ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 355666777777766654432 23333322221111 446667777777777766655555443
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.06 E-value=1.7 Score=36.19 Aligned_cols=124 Identities=13% Similarity=0.125 Sum_probs=53.6
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHH--HHHHHHcCC
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSI-VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTH-TFNIL--THVFCKNGD 255 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l--~~~~~~~g~ 255 (609)
..+.++.++|+..|..+.+.|..--+ ...-.......+.|+...|...|++.-...-.|-.. -...| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 44455555555555555444322211 122223334444555555555555544322122111 01111 112334455
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037911 256 VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYR 303 (609)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 303 (609)
++......+.+...+-+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555555555554443333333444455555555555555555555554
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.05 E-value=3.2 Score=41.08 Aligned_cols=64 Identities=14% Similarity=0.028 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037911 240 THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFD-PDLVTYNTLISSYCKKGRLNDAFYLYRIMYR 303 (609)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 303 (609)
..+-..+..++.+.|+.++|++.+.+|.+.... -+......|+.++...+.+.++..++.+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 444455666777788888888888888765322 1334667788888888888888888888654
No 261
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.5 Score=45.05 Aligned_cols=137 Identities=9% Similarity=0.016 Sum_probs=73.9
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.|.+.|++..|...|++++..= . +.+.-+.++... .. ..-..++..|..++.+.+++.+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l------------~-~~~~~~~ee~~~-~~-------~~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFL------------E-YRRSFDEEEQKK-AE-------ALKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHh------------h-ccccCCHHHHHH-HH-------HHHHHHhhHHHHHHHhhhhHHH
Confidence 7889999999999999876410 0 000000011111 00 1123344556666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHH-HHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVR-EAHQLFHRMV 337 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~ 337 (609)
|++...+.+..+ ++|....-.-..++...|+++.|...|+++.+..+. |...-+.++.+.-+..... ...++|..|.
T Consensus 276 Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 276 AIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666554 345555555666666666777777777666665332 3333444444433333332 3355666665
Q ss_pred H
Q 037911 338 H 338 (609)
Q Consensus 338 ~ 338 (609)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 4
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.95 E-value=1.3 Score=41.54 Aligned_cols=165 Identities=12% Similarity=0.033 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh-CCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----CCCHHh
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGR-IGICP---NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGF-----DPDLVT 277 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~ 277 (609)
+|..+.+++-+.-++.+++.+-+.-.. .|..| -....-++..++...+.++++++.|+...+..- .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444455444455555554443222 12222 112334456666677778888888877665311 112345
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhh----CCccCCHh-hHH-----HHHHHHHhcCCHHHHHHHHHHHHH----CCCCC
Q 037911 278 YNTLISSYCKKGRLNDAFYLYRIMYR----RNVLPDLV-TYT-----TLMNGLCKEGKVREAHQLFHRMVH----RGLSP 343 (609)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~-~~~-----~ll~~~~~~~~~~~a~~~~~~m~~----~g~~p 343 (609)
+-.|...|....|+++|+-+..+..+ .++. |.. -|. .|.-++...|...+|.+.-++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 77777788888888887766555443 2222 211 122 233345566666666666665543 23221
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 344 -DIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 344 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
-......+.+.|...|+.+.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12334556667777888888777776644
No 263
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.95 E-value=0.41 Score=43.01 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=60.9
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGF 262 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (609)
.+.++---..++.|.+.|+..|..+|+.|++.+-+..- .|... +....--|= .+-+-++++
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv-fQ~~F~HYP--~QQ~C~I~v 145 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV-FQKVFLHYP--QQQNCAIKV 145 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH-HHHHHhhCc--hhhhHHHHH
Confidence 34455555667888999999999999999987654321 11111 111111111 223456777
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCC-HhHHHHHHHHHh
Q 037911 263 LEKIEEEGFDPDLVTYNTLISSYCKKGR-LNDAFYLYRIMY 302 (609)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~ 302 (609)
+++|...|+.||..+-..++.++.+.+. ..+..+++-.|.
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 8888888888888888888888777665 333444444443
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=3.1 Score=38.70 Aligned_cols=154 Identities=10% Similarity=-0.019 Sum_probs=100.6
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHHcCC
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTF----NILTHVFCKNGD 255 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~l~~~~~~~g~ 255 (609)
....|+..+|-..++++++. +|.|..+++..=+++.-.|+...-...++++.... .+|...| ....-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence 44677888888888888773 57788888888888888888888888888876541 2444333 233334556788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCC---HhhHHHHHHHHHhcCCHHHHHHH
Q 037911 256 VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPD---LVTYTTLMNGLCKEGKVREAHQL 332 (609)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~ 332 (609)
+++|++.-++..+.+ +.|...-.++...+-.+|++.++.+++.+-...=-.-+ ...|=...-.+...+.++.|+.+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 888888888877765 44677777777788888888888887765543200000 01111122234455777888877
Q ss_pred HHHH
Q 037911 333 FHRM 336 (609)
Q Consensus 333 ~~~m 336 (609)
|+.-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 7653
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=94.77 E-value=2.2 Score=42.02 Aligned_cols=155 Identities=10% Similarity=0.016 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchh-HH-HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037911 142 FSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW-AY-VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN 219 (609)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 219 (609)
.+.|..+|.+++......|.....|..+..|+..... .+ .......+|.+..++..+.+ +.|..+...+..++.-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4568888999885433455666667666553211100 01 13445677888888888876 667777777777777778
Q ss_pred ChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCCHhHHHHH
Q 037911 220 CIDQCWQVYEEMGRIGICPN-THTFNILTHVFCKNGDVDKVNGFLEKIEEEGF-DPDLVTYNTLISSYCKKGRLNDAFYL 297 (609)
Q Consensus 220 ~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~ 297 (609)
+++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+... +.........++.|+.. .++.|+++
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 899999999988774 354 44555555556678888888888888665421 11223334444556554 45666666
Q ss_pred HHH
Q 037911 298 YRI 300 (609)
Q Consensus 298 ~~~ 300 (609)
|-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 644
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.64 E-value=2.2 Score=35.52 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=101.9
Q ss_pred hHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCh
Q 037911 178 WAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT-HTFNILTHVFCKNGDV 256 (609)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~ 256 (609)
+.|...++...+=..|...++ +.+.+..++|+.-|.++.+.|...-. -....+.......|+.
T Consensus 47 y~yw~~s~as~sgd~flaAL~----------------lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdt 110 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALK----------------LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDT 110 (221)
T ss_pred eehhcccccccchHHHHHHHH----------------HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccH
Confidence 345555555555444444433 45678899999999999887643222 2222344557788999
Q ss_pred HHHHHHHHHHHHcCCCCCHHh-HHH--HHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 037911 257 DKVNGFLEKIEEEGFDPDLVT-YNT--LISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLF 333 (609)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~-~~~--li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 333 (609)
..|+..|+++-.....|-+.- ... -...+..+|.+++.....+.+-..+-..-...-..|.-+..+.|++.+|.++|
T Consensus 111 a~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F 190 (221)
T COG4649 111 AAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWF 190 (221)
T ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHH
Confidence 999999999987644443321 111 12346678999999988888776554334455567777888999999999999
Q ss_pred HHHHHCCCCCC
Q 037911 334 HRMVHRGLSPD 344 (609)
Q Consensus 334 ~~m~~~g~~p~ 344 (609)
.++......|.
T Consensus 191 ~qia~Da~apr 201 (221)
T COG4649 191 VQIANDAQAPR 201 (221)
T ss_pred HHHHccccCcH
Confidence 99987543443
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.61 E-value=3.3 Score=37.27 Aligned_cols=221 Identities=17% Similarity=0.082 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCccCHHHHHHHHHHHHccCCHHHHHH
Q 037911 324 GKVREAHQLFHRMVHRGLS-PDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN-GIYPDTFTCQIIVQGYGKEGRLLSALN 401 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 401 (609)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 02344445555555555555555555555431 112233344444444555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037911 402 LVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNI 481 (609)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 481 (609)
.+.......... ......... . .+...|+++.|...+.+......
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~---------------------------------~-~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLAL---------------------------------G-ALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHH---------------------------------H-HHHHcCCHHHHHHHHHHHHhcCC
Confidence 555554432221 111111111 0 34444555555555555433110
Q ss_pred --CCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-hhc
Q 037911 482 --KPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLP-DSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD-TES 557 (609)
Q Consensus 482 --~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~ 557 (609)
......+......+...++.+++...+.++.... .. ....+..+...+...++++.|...+...... .++ ...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 238 (291)
T COG0457 162 ELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEA 238 (291)
T ss_pred CccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHH
Confidence 0111222222222344455555555555555421 11 2344455555555555555555555555543 222 222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 558 YNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
+..+...+...|..+++...+.+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 239 LYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333334445555555555554
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.52 E-value=2.2 Score=34.99 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=13.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 037911 252 KNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYC 286 (609)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 286 (609)
..+.......+++.+...+ ..+....+.++..|+
T Consensus 19 ~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 19 KRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred hCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 3334444444444443333 123333444444444
No 269
>PRK11906 transcriptional regulator; Provisional
Probab=94.45 E-value=3 Score=41.03 Aligned_cols=81 Identities=11% Similarity=-0.041 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 466 VADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD-SQICRVLINGYCMEKDVNKAEALLG 544 (609)
Q Consensus 466 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (609)
..+|.++-+..++.+. -|..+...+..++...++++.|..+|+++... .|| ..+|-.....+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444555555555432 34455555555555555566666666665532 333 2334444444555566666666666
Q ss_pred HHHHc
Q 037911 545 FFAKK 549 (609)
Q Consensus 545 ~~~~~ 549 (609)
+..+.
T Consensus 397 ~alrL 401 (458)
T PRK11906 397 KSLQL 401 (458)
T ss_pred HHhcc
Confidence 55433
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.40 E-value=4.6 Score=38.04 Aligned_cols=129 Identities=13% Similarity=0.192 Sum_probs=65.5
Q ss_pred HhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC-
Q 037911 291 LNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK--EG----KVREAHQLFHRMVHRGL---SPDIVSYNTLIFAYCKEGK- 360 (609)
Q Consensus 291 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~- 360 (609)
+++.+.+++.|.+.|..-+..+|-+..-.... .. ....|..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44455666677777766565555443322222 11 24567777777776521 2334445444433 2222
Q ss_pred ---hHHHHHHHHHHHHCCCccCH--HHHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037911 361 ---MQESKSLLYEMMGNGIYPDT--FTCQIIVQGYGKEGR--LLSALNLVVELQRFGVSISRDIYDYL 421 (609)
Q Consensus 361 ---~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l 421 (609)
.+.+..+|+.+.+.|...+- .....++........ ..++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34556666666665554322 223333332222222 33566677777777766665555443
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.37 E-value=4.7 Score=38.04 Aligned_cols=157 Identities=11% Similarity=0.032 Sum_probs=67.6
Q ss_pred HHHcCChHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhh--CCcc---CCHhhHHHHHHHHHh
Q 037911 250 FCKNGDVDKVNGFLEKIEEEG--FDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYR--RNVL---PDLVTYTTLMNGLCK 322 (609)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~---p~~~~~~~ll~~~~~ 322 (609)
+....+.++|+..+.+...+- ..-...+|..+..+.++.|.+++++..--...+ .... .-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666554430 011233455555666666666555433211110 0000 011233334444444
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CccCHHHHHHHHHHHHcc
Q 037911 323 EGKVREAHQLFHRMVHR-GLSPD---IVSYNTLIFAYCKEGKMQESKSLLYEMMGNG-----IYPDTFTCQIIVQGYGKE 393 (609)
Q Consensus 323 ~~~~~~a~~~~~~m~~~-g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 393 (609)
..++.+++.+-+.-... |..|. -....++..++...+.++++++.|+...+-- .......+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44444444443333222 22221 1122234444445555666666665554321 111234455555556666
Q ss_pred CCHHHHHHHHHHH
Q 037911 394 GRLLSALNLVVEL 406 (609)
Q Consensus 394 ~~~~~A~~~~~~~ 406 (609)
.|+++|+-+..+.
T Consensus 176 ~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 176 KDYEKALFFPCKA 188 (518)
T ss_pred HhhhHHhhhhHhH
Confidence 6666655544443
No 272
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=4.2 Score=37.38 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=20.7
Q ss_pred hcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 287 KKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 287 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
..|++.+|..+|+........ +...-..++.+|...|+.+.|..++..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 344444444444444433222 2233333444444444444444444443
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.08 E-value=2.4 Score=35.16 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=47.2
Q ss_pred HhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037911 137 AWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLL 216 (609)
Q Consensus 137 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 216 (609)
.+.++.+++..+++.+....+ ..+...++... .++..|++.+|+.+|+++.+.+ |.......|+..|.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP-~~~e~~~~~~~---------l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL 88 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRP-EFPELDLFDGW---------LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCL 88 (160)
T ss_pred HccCChHHHHHHHHHHHHhCC-CchHHHHHHHH---------HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence 456788888888888887633 33455556555 4688999999999999987643 44444455555554
Q ss_pred hc
Q 037911 217 KL 218 (609)
Q Consensus 217 ~~ 218 (609)
..
T Consensus 89 ~~ 90 (160)
T PF09613_consen 89 YA 90 (160)
T ss_pred HH
Confidence 43
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.03 E-value=7 Score=38.79 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 311 VTYTTLMNGLCKEGKVREAHQLFHRMVHRG-LSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 311 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
.+-..+..++-+.|+.++|.+.|++|.+.. ..-+..+...|+.++...+.+.++..++.+-.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 333445556666777777777777776532 111234556677777777777777777766543
No 275
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.45 E-value=0.22 Score=31.12 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=15.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
++..+...|...|++++|+++|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 276
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.33 E-value=4.3 Score=34.15 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=9.8
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCC
Q 037911 197 LDVGFQPSIVSCNFLLNGLLKLNC 220 (609)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~~~~~~~ 220 (609)
.+.+++|+...+..+++.+.+.|+
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCC
Confidence 333344444444444444444443
No 277
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.25 E-value=11 Score=38.39 Aligned_cols=397 Identities=11% Similarity=0.005 Sum_probs=212.7
Q ss_pred hHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCH
Q 037911 107 VSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLI 186 (609)
Q Consensus 107 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 186 (609)
..+...++..... ++---.-|...+..=.+.|..+.+.++|++.+.. .|.+.+.+...... .....|+.
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a---ip~SvdlW~~Y~~f------~~n~~~d~ 130 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA---IPLSVDLWLSYLAF------LKNNNGDP 130 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---hhhHHHHHHHHHHH------HhccCCCH
Confidence 3444444444432 2333345556666778889999999999998854 66777777766642 33467788
Q ss_pred HHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HHc------CC
Q 037911 187 RESFKTFRKTLDV-GF-QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVF---CKN------GD 255 (609)
Q Consensus 187 ~~A~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~---~~~------g~ 255 (609)
+...+.|+.++.. |. -.+...|...+..-...+++.....+|++..+. | ...|+....-| .+. ..
T Consensus 131 ~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~ 206 (577)
T KOG1258|consen 131 ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLS 206 (577)
T ss_pred HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcC
Confidence 8888888888762 21 134557888888888889999999999999873 2 22222222222 111 22
Q ss_pred hHHHHHHHHHHHHc---C-CCCCHHhHHHHHHHHHh-cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHH
Q 037911 256 VDKVNGFLEKIEEE---G-FDPDLVTYNTLISSYCK-KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAH 330 (609)
Q Consensus 256 ~~~a~~~~~~~~~~---~-~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 330 (609)
.+++.++-....+. + ..+....+..-+.--.. .+..+++.....+... ..-..+-......+..
T Consensus 207 ~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr 275 (577)
T KOG1258|consen 207 IDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKR 275 (577)
T ss_pred HHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHH
Confidence 33333333222211 0 00011111111110000 0111111111111110 0001111222233333
Q ss_pred HHHHHHHHCC---C----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHH
Q 037911 331 QLFHRMVHRG---L----SPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLV 403 (609)
Q Consensus 331 ~~~~~m~~~g---~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 403 (609)
..|+.-.++- + .++..+|..-+.--...|+.+.+.-+|+...-- +..=...|-..+.-....|+.+-|-.++
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 3344433321 1 234567777777788889998888888876532 1111223444444444458888888887
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHCC
Q 037911 404 VELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADAL---LLKDEMVDRN 480 (609)
Q Consensus 404 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~ 480 (609)
....+...+-.+.+--.-....-..|+...|..+++.+...- +.-...-..-+....+.|+.+.+. .++....+..
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 776665544333333333333445678889999998886553 222223333345566778888877 3333333221
Q ss_pred CCCCHHHHHHHHH-----HHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 037911 481 IKPSLSTYRALIC-----CFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEK 534 (609)
Q Consensus 481 ~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 534 (609)
-+......+.- .+.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 434 --~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 434 --ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred --cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 12222222221 233468889999999999874 5667777888877776665
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.01 E-value=0.21 Score=29.52 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=20.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888999999999999998865
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.00 E-value=1.1 Score=41.11 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=48.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHHH
Q 037911 522 ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR-----LGFAPNNLTCKYM 596 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 596 (609)
++..++..+...|+++.+.+.++.+.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44555666666666666666666666543 33556666677777777777777666666543 4666666665555
Q ss_pred HHH
Q 037911 597 IHS 599 (609)
Q Consensus 597 l~~ 599 (609)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.83 E-value=1.8 Score=37.23 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSL--STYRALICCFCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (609)
..+..+...|++.|+.++|.+.|.++.+....+.. ..+-.+|......+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667777788888888888888887766443433 3455666666777777777777766654
No 281
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.81 E-value=11 Score=37.39 Aligned_cols=427 Identities=9% Similarity=0.063 Sum_probs=207.5
Q ss_pred hHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCH
Q 037911 107 VSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLI 186 (609)
Q Consensus 107 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 186 (609)
..-+.+|+.+.. .+++|+..|..-+.-+-+.+.+.+...+|.+++.. +|.+++++..... |-|-..-.+
T Consensus 88 ~rIv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~---Hp~~~dLWI~aA~------wefe~n~ni 156 (568)
T KOG2396|consen 88 NRIVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK---HPNNPDLWIYAAK------WEFEINLNI 156 (568)
T ss_pred HHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCchhHHhhhh------hHHhhccch
Confidence 355667777765 46779999999998888888899999999999976 5666666654433 245566668
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH---------HHHHH------HHHH
Q 037911 187 RESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHT---------FNILT------HVFC 251 (609)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---------~~~l~------~~~~ 251 (609)
+.|..+|.+.++.. +.++..|-...+.-. ..+..+..+=...|...+..+ +.... .+..
T Consensus 157 ~saRalflrgLR~n-pdsp~Lw~eyfrmEL-----~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~ 230 (568)
T KOG2396|consen 157 ESARALFLRGLRFN-PDSPKLWKEYFRMEL-----MYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAV 230 (568)
T ss_pred HHHHHHHHHHhhcC-CCChHHHHHHHHHHH-----HHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcch
Confidence 99999998888754 334444443333211 011111111111111111110 00000 0000
Q ss_pred Hc---------CChHHHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHH
Q 037911 252 KN---------GDVDKVN-GFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLC 321 (609)
Q Consensus 252 ~~---------g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 321 (609)
+. ....+.. .+.+.+.. +.+-++.++.. .|.+.++-.......+ +...-.+..
T Consensus 231 k~~e~~~~~~~d~~kel~k~i~d~~~~-~~~~np~~~~~------------laqr~l~i~~~tdl~~----~~~~~~~~~ 293 (568)
T KOG2396|consen 231 KSVELSVAEKFDFLKELQKNIIDDLQS-KAPDNPLLWDD------------LAQRELEILSQTDLQH----TDNQAKAVE 293 (568)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhc-cCCCCCccHHH------------HHHHHHHHHHHhhccc----hhhhhhchh
Confidence 00 0000000 01111111 11112222221 1222222222111110 001111111
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC------ChHHHHHHHHHHHHC-CCcc-CHHHHHHHHHHHHcc
Q 037911 322 KEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEG------KMQESKSLLYEMMGN-GIYP-DTFTCQIIVQGYGKE 393 (609)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 393 (609)
-.-+.+....+|++..+. .|+...++..|..|...- .+.....+++...+. +..+ ....|..+.-.++..
T Consensus 294 ~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~ 371 (568)
T KOG2396|consen 294 VGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTL 371 (568)
T ss_pred cchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhcc
Confidence 111223334666666653 455666666666654322 233444555554443 2222 234455555555555
Q ss_pred CCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHhcCC-HH
Q 037911 394 GRLLSA-LNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLL----ERIGQDGYVPSLEIYNELMESLCKCDS-VA 467 (609)
Q Consensus 394 ~~~~~A-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~ 467 (609)
....++ ..+..+. +.-+...+-.-+....+... +..-.+ ..+...-..+....|+... .|+ ..
T Consensus 372 ~~~r~~a~~l~~e~----f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~ 440 (568)
T KOG2396|consen 372 NEAREVAVKLTTEL----FRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQ 440 (568)
T ss_pred chHhHHHHHhhHHH----hcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchh
Confidence 443332 2222222 23344444444444442221 112222 2222221223333344333 122 22
Q ss_pred HHH--HHHHHHHHCCCCCCHHHH-HHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCCHHHHHHH
Q 037911 468 DAL--LLKDEMVDRNIKPSLSTY-RALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM--EKDVNKAEAL 542 (609)
Q Consensus 468 ~A~--~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~ 542 (609)
... .++...... ..|+..++ +.+++.+.+.|-..+|...+..+.... +|+...|..++..-.. .-+..-++++
T Consensus 441 ~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~ 518 (568)
T KOG2396|consen 441 EDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREY 518 (568)
T ss_pred HHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHH
Confidence 111 222222332 23666554 456677778888999999999988643 5566666666543221 2237788889
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 543 LGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
++.+....+ -|+..|...+..-...|..+.+-.++.++++
T Consensus 519 yd~a~~~fg-~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 519 YDRALREFG-ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhC-CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 998887765 7888888877777788988888888776654
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.77 E-value=1.3 Score=40.78 Aligned_cols=70 Identities=11% Similarity=0.219 Sum_probs=43.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR-----IGICPNTHTFNILTHV 249 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l~~~ 249 (609)
.+...|+++.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.......
T Consensus 162 ~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 162 ALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 5566666666666666666654 55666666666666666666666666665543 4666666665555554
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.72 E-value=5.4 Score=33.60 Aligned_cols=136 Identities=16% Similarity=0.174 Sum_probs=88.4
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 225 WQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 225 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
.+.++.+.+.+++|+...+..++..+.+.|++.....++ ..++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 455666677889999999999999999999976655544 44555665555544433322 233344443344332
Q ss_pred CccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037911 305 NVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 305 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
=...+..++..+...|++-+|.++.+..... +......++.+..+.+|...-..+++-..+.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0113556778889999999999999876433 2233355777877888877666666665554
No 284
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.66 E-value=16 Score=38.87 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCC-----HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCC--CcHHhH
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKPT-----SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCP--HSVDVF 166 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ 166 (609)
.+..+|.....+.+.|...+..+...... ++ ..+...+++++.+.+... |...+++.++.....+ .....|
T Consensus 64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~f 141 (608)
T PF10345_consen 64 RLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAF 141 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHH
Confidence 45567777788999999999988653222 32 234457788888887777 9999999988754422 223334
Q ss_pred HHH-hhccccchhHHHHhCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHhhCC-----
Q 037911 167 QDL-ISCTEDCNWAYVKVGLIRESFKTFRKTLDVG---FQPSIVSCNFLLNGLL--KLNCIDQCWQVYEEMGRIG----- 235 (609)
Q Consensus 167 ~~l-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~----- 235 (609)
.-+ +. .+...+++..|++.++.+...- ..|.+.++-.++.++. +.+..+++.+..+++....
T Consensus 142 rll~~~-------l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 142 RLLKIQ-------LALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred HHHHHH-------HHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 333 21 2223379999999999887632 2455555555555544 4565677777777663221
Q ss_pred ----CCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHH
Q 037911 236 ----ICPNTHTFNILTHVFC--KNGDVDKVNGFLEKIE 267 (609)
Q Consensus 236 ----~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 267 (609)
-.|-..+|..+++.++ ..|+++.+...++++.
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1244567777777655 4577777776666554
No 285
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=92.37 E-value=8.5 Score=35.06 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=68.9
Q ss_pred CChhHHHHHHHHhhhcCCC-----CCC------HHhHHHH-HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhh
Q 037911 104 SDSVSALTFFNWVKNDLEI-----KPT------SSNYCLI-VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLIS 171 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~-----~~~------~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (609)
.|+..|++..+...+.... .+. -.+.+.+ |++++..|+|.++....-+.-+.....|+. +...=|-
T Consensus 49 rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCIL 126 (309)
T PF07163_consen 49 RDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCIL 126 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHH
Confidence 3677777777666543211 111 1233333 888999999998887765555432233333 2322222
Q ss_pred ccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCChHHHHHHH
Q 037911 172 CTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGL-----LKLNCIDQCWQVY 228 (609)
Q Consensus 172 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~ 228 (609)
.|.+.|....+.++-+......-.-+...|..++..| .-.|.+++|+++.
T Consensus 127 -------LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 127 -------LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred -------HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 6889999998888888887643333444465555444 4457777777766
No 286
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.37 E-value=31 Score=41.50 Aligned_cols=318 Identities=10% Similarity=0.020 Sum_probs=166.0
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhh-cCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhc
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKN-DLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISC 172 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (609)
.++++....-+.+..|+-.++.-.. .........-|..+-..|+..+++|....+..... .+..++..++
T Consensus 1387 ~tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-------a~~sl~~qil-- 1457 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-------ADPSLYQQIL-- 1457 (2382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-------cCccHHHHHH--
Confidence 3444433334578888888876311 11111233444455559999999998888766421 1334455555
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHH
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFN-ILTHVFC 251 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~ 251 (609)
.....|++++|...|+++.+.+ ++....++-++......|.++.+.-..+-..... .+....++ .=+.+-.
T Consensus 1458 ------~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW 1529 (2382)
T KOG0890|consen 1458 ------EHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAW 1529 (2382)
T ss_pred ------HHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHh
Confidence 4778999999999999999876 4557788888888888888888888666655432 23333333 3344456
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHhHHHH--HHHHHhc--CCHhHHHHHHHHHhhCCccC---------CHhhHHHHHH
Q 037911 252 KNGDVDKVNGFLEKIEEEGFDPDLVTYNTL--ISSYCKK--GRLNDAFYLYRIMYRRNVLP---------DLVTYTTLMN 318 (609)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~--g~~~~a~~~~~~~~~~~~~p---------~~~~~~~ll~ 318 (609)
+.++++...+.+. .. +..+|... .....+. .+.-.-.+..+.+.+.-+.| -...|..+++
T Consensus 1530 ~l~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~k 1602 (2382)
T KOG0890|consen 1530 RLSQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMK 1602 (2382)
T ss_pred hhcchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHH
Confidence 7788887777665 11 22333332 2222221 12111112222222211110 0123333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCChHHHHHHHH-HHHHC----CCc-cCHHHHHHH
Q 037911 319 GLCKEGKVREAHQLFHRMVHRGLSPD------IVSYNTLIFAYCKEGKMQESKSLLY-EMMGN----GIY-PDTFTCQII 386 (609)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~----~~~-~~~~~~~~l 386 (609)
.+.-.. -....+... +..++ ..-|..-+..-....+..+-+--++ .+... +.. --..+|...
T Consensus 1603 LH~l~e----l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqs 1676 (2382)
T KOG0890|consen 1603 LHLLLE----LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQS 1676 (2382)
T ss_pred HHHHHH----HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 322111 111111111 11111 1112111111111111111111111 11111 111 123567777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037911 387 VQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
.+...++|+++.|...+-...+.+ -+..+-..+..+...|+...|+.++++....
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 777778888888888777776665 3456666777788888888888888877543
No 287
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.36 E-value=7.9 Score=34.64 Aligned_cols=120 Identities=19% Similarity=0.109 Sum_probs=87.8
Q ss_pred cCCHhHHHHHHHHHhhCCccC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 288 KGRLNDAFYLYRIMYRRNVLP-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR-GLSPDIVSYNTLIFAYCKEGKMQESK 365 (609)
Q Consensus 288 ~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~ 365 (609)
.+....+...+.......... ....+......+...+++..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 466777777777776654321 3567778888899999999999999988763 23445667777778888889999999
Q ss_pred HHHHHHHHCCCccCHHHHHHHHH-HHHccCCHHHHHHHHHHHHH
Q 037911 366 SLLYEMMGNGIYPDTFTCQIIVQ-GYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~ 408 (609)
..+.........+ ......... .+...|+++.|...+.+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999988754333 222333333 78899999999999998855
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.36 E-value=0.34 Score=28.62 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
+|..|.++|.+.|++++|++++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999996643
No 289
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.22 E-value=17 Score=38.09 Aligned_cols=178 Identities=18% Similarity=0.208 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHH----HH-HHHcCChHHHHHHHHHHHH-------cCCCCCHHhHHHHHHHHHhc
Q 037911 221 IDQCWQVYEEMGRIGICPNTHTFNILT----HV-FCKNGDVDKVNGFLEKIEE-------EGFDPDLVTYNTLISSYCKK 288 (609)
Q Consensus 221 ~~~a~~~~~~m~~~~~~~~~~~~~~l~----~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~ 288 (609)
...|.+.++...+.|. ......+. .+ +....+.+.|...|+.+.+ .| .....+.+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 3456666666666542 22221121 12 3345677777777777765 44 333555666666653
Q ss_pred C-----CHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----Hc
Q 037911 289 G-----RLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK-EGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYC----KE 358 (609)
Q Consensus 289 g-----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~ 358 (609)
. +.+.|+.++.+.-+.|.. +...+-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 566688888877777643 43333222222222 24567888888888877643 22222222221 22
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 037911 359 GKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFG 410 (609)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 410 (609)
.+.+.|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+.+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 35677888888877776 2222222222333333 66666666666555554
No 290
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.04 E-value=18 Score=38.07 Aligned_cols=99 Identities=8% Similarity=0.127 Sum_probs=48.3
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQP---SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDV 256 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (609)
+.+.+.+++|++..+..... .+ -...+...+..+...|++++|-...-.|.. -+..-|...+..+...++.
T Consensus 366 ll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccccc
Confidence 45666666666666554432 22 233455566666666666666666666654 2344444444444444443
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 037911 257 DKVNGFLEKIEEEGFDPDLVTYNTLISSYCK 287 (609)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 287 (609)
.....+ +.......+...|..++..+..
T Consensus 440 ~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 TDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred chhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 322221 1111112344456655555544
No 291
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=9.3 Score=33.81 Aligned_cols=52 Identities=12% Similarity=-0.005 Sum_probs=28.6
Q ss_pred CCHhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 037911 499 GRSGEAVSLMDEMLES--GMLPD---SQICRVLINGYCMEKDVNKAEALLGFFAKKF 550 (609)
Q Consensus 499 g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (609)
.++++|+..|+..-+- |-..+ ...+.-+...-...+++.+|.++|++.....
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666665431 11111 1223333444456678888888888777653
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.44 E-value=6.8 Score=31.99 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=40.6
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 200 (609)
..++++++..+++.+.-..+ ..+..++|... .+...|++.+|+.+|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~---------l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRP-NLKELDMFDGW---------LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCC-CccccchhHHH---------HHHHcCCHHHHHHHHHhhhccC
Confidence 47888899999998887733 33555666655 4689999999999999998754
No 293
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.13 E-value=9.1 Score=32.88 Aligned_cols=89 Identities=11% Similarity=0.002 Sum_probs=57.8
Q ss_pred HHHhcCCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 037911 493 CCFCGIGRSGEAVSLMDEMLESGMLPDS----QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAED 568 (609)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 568 (609)
..+...|++++|..-++..... .-|. .+-..|.......|.+++|.+.++.....+. .......-.+++...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 4566778888888888777642 1121 1223456667778888888888876663321 222234445778888
Q ss_pred CCHHHHHHHHHHHHHcC
Q 037911 569 GDLSKLMELQKRFLRLG 585 (609)
Q Consensus 569 g~~~~A~~~~~~m~~~g 585 (609)
|+-++|+.-|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888888764
No 294
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.06 E-value=17 Score=35.84 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=74.7
Q ss_pred HHhCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 181 VKVGLIRESFKTFRKTL-DVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
...|+...|-+-+...+ ...-.|+.... ........|+++.+...+...... +.....+...+++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 35566666654444333 33223333332 233455678888888887766443 345567778888888888899999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRN 305 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 305 (609)
..+-+.|....++ +...........-..|-++++...|+++...+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8888888776554 33333333333344566788888888876544
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.75 E-value=0.82 Score=26.26 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
..|..+..++...|++++|++.++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999999976
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.58 E-value=0.35 Score=28.14 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=17.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 037911 194 RKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCW 225 (609)
Q Consensus 194 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 225 (609)
++.++.. |-+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444433 445666666666666666666654
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.52 E-value=5.5 Score=34.22 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN--THTFNILTHVFCKNGDVDKVNGFLEKIEE 268 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 268 (609)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566667777777777777777665432222 23445556666666666666666655443
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.43 E-value=4.8 Score=40.69 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=61.3
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVN 260 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 260 (609)
.+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3667777776665543 3455677777777777777777777776544 234555666667666555
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 037911 261 GFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIM 301 (609)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 301 (609)
.+-....+.|. .|....+|...|+++++++++.+-
T Consensus 713 ~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 55555555542 122334555667777777766543
No 299
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.39 E-value=5 Score=34.46 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=63.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLL 212 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (609)
.+-+..+|+|.+|..-|.+++.. +|+...-..+++- ....-++.+.++++.|++-..+.++.+ +....+...-.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~---cp~~~~e~rsIly--~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRA 175 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES---CPSTSTEERSILY--SNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRA 175 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh---CccccHHHHHHHH--hhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHH
Confidence 55678899999999999999987 4433332222221 001117889999999999999988876 22222223333
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 037911 213 NGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
.+|-+...+++|++=|+++.+.
T Consensus 176 eayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 4667777788888888877764
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.08 E-value=11 Score=32.30 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=23.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
.....|.+|+|...++...+.++. ......-.+.+...|+-++|..-|++..+.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 334444455555544444433221 111222234445555555555555555444
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.91 E-value=13 Score=32.58 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=49.6
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
|-..|-..-|.--|.+..... +.-+.+||.|.--+...|+++.|.+.|+...+.+. ....+...-.-++.--|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchHhh
Confidence 444455555555565555532 23355777777777778888888888887776431 1122222112223345777777
Q ss_pred HHHHHHHHHc
Q 037911 260 NGFLEKIEEE 269 (609)
Q Consensus 260 ~~~~~~~~~~ 269 (609)
.+=+...-+.
T Consensus 153 q~d~~~fYQ~ 162 (297)
T COG4785 153 QDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHhc
Confidence 7666655544
No 302
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.58 E-value=14 Score=32.42 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=39.0
Q ss_pred CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 159 CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
.|.-+++|+.+.- .+...|+++.|.+.|+...+.+..-+-...|.-|..| --|++..|.+=+-..-+
T Consensus 95 ~P~m~~vfNyLG~-------Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 95 RPDMPEVFNYLGI-------YLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred CCCcHHHHHHHHH-------HHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHh
Confidence 3556677777765 6677777777777777777754322222333222222 24667777665555544
No 303
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.48 E-value=4.2 Score=35.16 Aligned_cols=77 Identities=8% Similarity=-0.003 Sum_probs=34.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhcCCCHh
Q 037911 426 CQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDR---NIKPSLSTYRALICCFCGIGRSG 502 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~ 502 (609)
.+.|+ ++|.+.|-.+...+...++.....|...|. ..+.+++..++....+. +-.+|+..+..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 555555555544443444444444444443 24444555544444432 11334444444444444444444
Q ss_pred HH
Q 037911 503 EA 504 (609)
Q Consensus 503 ~A 504 (609)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 43
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.09 E-value=0.94 Score=25.99 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=17.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.|..+...+...|++++|++.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3555666677777777777777776643
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.06 E-value=1 Score=25.92 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=18.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
+|..++.+|...|++++|++.|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4566666777777777777777776643
No 306
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.87 E-value=33 Score=35.94 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHH----H-HHhcCChHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHH
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLN----G-LLKLNCIDQCWQVYEEMGR-------IGICPNTHTFNILTHVFCK 252 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~----~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~ 252 (609)
...+|.+.++...+.|. ...-..+.. + +....+.+.|...|+.+.+ .| .......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 35789999999988762 222222222 2 4466789999999999866 44 33355566677766
Q ss_pred cC-----ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHH--hcC
Q 037911 253 NG-----DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK-KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLC--KEG 324 (609)
Q Consensus 253 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~ 324 (609)
.. +.+.|..++.+..+.|. |+...+-..+..... ..+...|.++|....+.|.. ....+..++.... -..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCC
Confidence 43 67789999999988873 344433333322222 24678999999999988864 2222222222222 334
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037911 325 KVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGI 376 (609)
Q Consensus 325 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 376 (609)
+.+.|..++.+..+.| .|-..--...+..+.. +..+.+.-.+..+.+.|.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7889999999999987 3332222222333333 777777776666665543
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.84 E-value=4.1 Score=30.23 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=44.6
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 037911 500 RSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFN 563 (609)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 563 (609)
+.-++.+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+..+.+... +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHHH
Confidence 44466666777777778888888888888888888888888888877744221 3345655543
No 308
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.66 E-value=1.5 Score=40.72 Aligned_cols=51 Identities=8% Similarity=-0.048 Sum_probs=23.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHhHHHHHHHHHH
Q 037911 460 LCKCDSVADALLLKDEMVDRNIKP-SLSTYRALICCFCGIGRSGEAVSLMDEML 512 (609)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 512 (609)
|.++|.+++|+..|...+... | |.+++..-..+|.+..++..|..=...++
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 455555555555554444322 3 44444444445555555444444444433
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.46 E-value=4.1 Score=30.58 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 037911 503 EAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFN 563 (609)
Q Consensus 503 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 563 (609)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+-. .....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence 5666667777777888888888888999999999999998888876532 22226666654
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.39 E-value=14 Score=30.86 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=53.7
Q ss_pred HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037911 451 EIYNELMES---LCKCDSVADALLLKDEMVDRNIKPSLSTYRAL-ICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVL 526 (609)
Q Consensus 451 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 526 (609)
.+.+.|+.. -.+.++.+++..++..+.-. .|.......+ ...+...|++.+|+.+|+++.+. .|.......|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHH
Confidence 344444443 34678888888888888763 3554433322 23456788888888888887653 3444444455
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc
Q 037911 527 INGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
+..|.....-..-..+-+++.+.
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~ 106 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLES 106 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhc
Confidence 55444433323333333444444
No 311
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.27 E-value=2.1 Score=39.38 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
+.++++.++..=++.|+-||..+++.+|+.+.+.+++.+|..+.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4455666666556666666666666666666666666666555555443
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.27 E-value=1.6 Score=25.10 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=25.5
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
.+|..++.++...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57888999999999999999999999876
No 313
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.25 E-value=0.92 Score=25.79 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhh
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELV 156 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 156 (609)
++..++.++.+.|++++|.+.|+++++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45677888899999999999999999873
No 314
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.10 E-value=0.72 Score=26.81 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=14.1
Q ss_pred ChhcHHHHHHHHHhcCCHHHHH
Q 037911 554 DTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
|+..|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4466666666666666666664
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.67 E-value=41 Score=35.61 Aligned_cols=102 Identities=8% Similarity=0.048 Sum_probs=59.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 037911 212 LNGLLKLNCIDQCWQVYEEMGRIGICP---NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK 288 (609)
Q Consensus 212 l~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 288 (609)
++-+.+.+.+++|+++.+.... ..| -.......|..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4556667788888877766543 233 2345566677777778888888777777643 455565555555555
Q ss_pred CCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh
Q 037911 289 GRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK 322 (609)
Q Consensus 289 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 322 (609)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 554333222 2222222345567666666665
No 316
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.32 E-value=78 Score=38.45 Aligned_cols=317 Identities=11% Similarity=0.039 Sum_probs=154.0
Q ss_pred HHHHHHHcCChHHHHHHHHHH----HHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHH
Q 037911 246 LTHVFCKNGDVDKVNGFLEKI----EEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLC 321 (609)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 321 (609)
+..+-.+++.+..|...++.- .+. ......|-.+...|..-+++|....+...... +... ..-|-...
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHH
Confidence 444555677788888887773 221 11223344455578888888877777664211 1122 23344556
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHH-HHHHHccCCHHHH
Q 037911 322 KEGKVREAHQLFHRMVHRGLSPD-IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQII-VQGYGKEGRLLSA 399 (609)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A 399 (609)
..|++..|...|+.+.+. .|+ ..+++-++......|.++.+....+-.... ..+....++.+ +.+--+.++++..
T Consensus 1461 ~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred hhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 778888888888888876 333 556666666666677777776655554433 12222223222 3334566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCC--hHHHHHHHHHHH--------hCCCC-CCHHHHHHHHHHHHhcCCH
Q 037911 400 LNLVVELQRFGVSISRDIYDY--LIVALCQDNR--PFAATSLLERIG--------QDGYV-PSLEIYNELMESLCKCDSV 466 (609)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~~~--~~~a~~~~~~~~--------~~~~~-~~~~~~~~l~~~~~~~g~~ 466 (609)
...+. .. +..+|.. +...+.+..+ .-.-...++.+. ..+.. .-...|..++....-..--
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 55554 11 1111111 2222222211 111111222221 11111 1123344444333221111
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHH-HHHCCCCC-----CHHHHHHHHHHHHccCCHHHH
Q 037911 467 ADALLLKDEMV-DRNIKPSLSTYRALICCFCGIGRSGEAVSLMDE-MLESGMLP-----DSQICRVLINGYCMEKDVNKA 539 (609)
Q Consensus 467 ~~A~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A 539 (609)
.....+ .... .....-+..-|..-+..-....+..+-+--+++ +......| -..+|-...+.....|.++.|
T Consensus 1611 ~~~~~l-~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1611 NSIEEL-KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHh-hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 111111 1000 001111112222222211111112221111111 11111122 245677888888889999999
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 540 EALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
...+-.+.+.+ -+..+-..+..+...|+...|+.++++-++.
T Consensus 1690 ~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1690 QNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 98887776553 3455667777888999999999999888855
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.95 E-value=13 Score=32.30 Aligned_cols=72 Identities=10% Similarity=-0.004 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 187 RESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI---GICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
++|++.|-++...+.--++.....|...|. ..+.++++.++-+..+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444443333333333333333 34455555554444321 1234555555555555555555554
No 318
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.30 E-value=6.9 Score=29.10 Aligned_cols=66 Identities=8% Similarity=0.027 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 535 DVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
|.-++.+-++.+......|++.+..+.+++|.+.+++.-|+++++-.+.+ ...+...|..+++.+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqeik 87 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEIK 87 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHHh
Confidence 55567777888887888999999999999999999999999999988744 2225567887777653
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.26 E-value=1.9 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=26.1
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
..+++.++..|...|++++|..++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999876
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.23 E-value=34 Score=33.26 Aligned_cols=65 Identities=15% Similarity=0.020 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037911 379 DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSI---SRDIYDYLIVALCQDNRPFAATSLLERIGQ 443 (609)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
...+|..+.+.+.+.|.++.|...+..+...+... .+.....-+..+...|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556667777777777777777777766543111 334444455666666766777776666544
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.08 E-value=15 Score=37.45 Aligned_cols=100 Identities=22% Similarity=0.254 Sum_probs=55.3
Q ss_pred HhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 286 CKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESK 365 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 365 (609)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 44566666666554432 445566666666667777766666665443 334555555566655544
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 037911 366 SLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVEL 406 (609)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 406 (609)
.+-....+.|.. |...-+|...|+++++++++..-
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 444444444421 22233455566666666666543
No 322
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.98 E-value=52 Score=35.04 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=41.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CccCHHHHHHHHHHHHc---
Q 037911 317 MNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNG-IYPDTFTCQIIVQGYGK--- 392 (609)
Q Consensus 317 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 392 (609)
...+.-.|.++.|.+.+-. ..+...|.+++...+..|. -+......-..+.... -.|....+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~g---LL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYG---LLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcC---CCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445668999999998877 2223446666655554443 2222221113333211 11122557778877765
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 037911 393 EGRLLSALNLVVELQRFG 410 (609)
Q Consensus 393 ~~~~~~A~~~~~~~~~~~ 410 (609)
..+..+|++++--+....
T Consensus 340 ~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFK 357 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 467888988887776553
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.92 E-value=5.9 Score=29.80 Aligned_cols=65 Identities=8% Similarity=-0.005 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 536 VNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 536 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
.-+..+-++.+......|++.+..+.+++|.+.+++.-|+++++-.+.+ ..+....|..+++.+.
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqElk 90 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQELK 90 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHHh
Confidence 3456677777777777999999999999999999999999999999865 2333338888887654
No 324
>PRK09687 putative lyase; Provisional
Probab=85.88 E-value=31 Score=32.36 Aligned_cols=202 Identities=15% Similarity=0.040 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHccCC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHhCCCCCC
Q 037911 379 DTFTCQIIVQGYGKEGR----LLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRP-----FAATSLLERIGQDGYVPS 449 (609)
Q Consensus 379 ~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 449 (609)
|...-...+.++.+.|+ .++++..+..+... .++..+-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 33334444444444443 23455555544222 34445555555555444321 112222222221 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037911 450 LEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIG-RSGEAVSLMDEMLESGMLPDSQICRVLIN 528 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 528 (609)
..+-...+.++.+.++ ++|...+-.+.+. +|...-...+.++.+.+ ....+...+..+.. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 4444555666666665 3455555555542 34444444444444432 23456666666653 346666666777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 529 GYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
++.+.|+ ..|...+-...+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.++.
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 7777777 45555555555432 2 234566777777774 677778777753 456666666666554
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.77 E-value=16 Score=33.96 Aligned_cols=50 Identities=24% Similarity=0.342 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 359 GKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
-+.++++.++..-+.-|+.||..+++.+|+.+.+.+++.+|..+...|..
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666555543
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.10 E-value=1.8 Score=26.24 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=21.0
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 556 ESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.+++.+...|...|++++|.+++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567788888888888888888887764
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.79 E-value=1.7 Score=27.03 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=12.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 037911 526 LINGYCMEKDVNKAEALLGFFAK 548 (609)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~ 548 (609)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45555555555555555555553
No 328
>PRK09687 putative lyase; Provisional
Probab=84.54 E-value=36 Score=31.94 Aligned_cols=136 Identities=18% Similarity=0.082 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037911 414 SRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCD-SVADALLLKDEMVDRNIKPSLSTYRALI 492 (609)
Q Consensus 414 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li 492 (609)
+..+-...+.++.+.++ .++...+-.+... ++..+-...+.++.+.+ ....+...+..+... ++...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 44455555566666665 4555555555432 23334444444444432 133444444444432 4555555566
Q ss_pred HHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 493 CCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+. +|...+..+.+. .+|..+-...+.++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 66666666 34555554444432 2 223455666666663 566666666654 33554444444433
No 329
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.36 E-value=59 Score=34.30 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=13.3
Q ss_pred HHHHhCCHHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKT 196 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~ 196 (609)
.+.-.|.+++|.++++..
T Consensus 157 ~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 157 RLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHTT-HHHHHHHH-TT
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 788899999999888543
No 330
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.56 E-value=37 Score=31.43 Aligned_cols=167 Identities=13% Similarity=0.109 Sum_probs=95.9
Q ss_pred hHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHH-hC-
Q 037911 107 VSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVK-VG- 184 (609)
Q Consensus 107 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~g- 184 (609)
+.-..|++-...+......+. |..++ .++...-+|..+++..-.. +..-.++.+...++. .... .+
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~-Y~~LV---k~N~~Vv~aL~L~~~~~~~-~~Ii~d~evislLL~-------sMv~~~~~ 180 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFN-YWDLV---KRNKIVVEALKLYDGLNPD-ESIIFDEEVISLLLK-------SMVIDENT 180 (292)
T ss_pred HHHHHHHHHHHhccccccchH-HHHHH---HhhHHHHHHHHHhhccCcc-cceeeChHHHHHHHH-------HHHhcccc
Confidence 345666766665433333322 43333 2333455666666622111 112245555555555 3333 11
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 185 LIRESFKTFRKTL-DVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI-GICPNTHTFNILTHVFCKNGDVDKVNGF 262 (609)
Q Consensus 185 ~~~~A~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (609)
....--++.+-+. +.|-.++..+...++..+++.+++.+-+++++.-... +..-|...|..+|+...+.|+..-..++
T Consensus 181 ~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 181 KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 1111222222222 2334677777888889999999999999988887654 4556788888899999999998877777
Q ss_pred HHH-----HHHcCCCCCHHhHHHHHHHH
Q 037911 263 LEK-----IEEEGFDPDLVTYNTLISSY 285 (609)
Q Consensus 263 ~~~-----~~~~~~~~~~~~~~~li~~~ 285 (609)
.++ +.+.|+..+...-..+-..+
T Consensus 261 I~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 261 IDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred hhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 665 23445555555555544444
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.28 E-value=3.5 Score=23.54 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
.+|..+..++...|++++|...|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999999876
No 332
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.21 E-value=2.8 Score=29.76 Aligned_cols=50 Identities=22% Similarity=0.182 Sum_probs=38.3
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHH
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFR 194 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~ 194 (609)
..++.++|+..|..+++.....+.-..++..++. +|...|+++++++.--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~q-------A~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQ-------AHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 6778889999999999875444444556667777 8999999999887653
No 333
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.10 E-value=39 Score=31.25 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 313 YTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 313 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
++.....|..+|.+.+|.++.+...... +.+...+-.++..+...||--.|.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344556667777777777777666542 3355666667777777777666655555543
No 334
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.02 E-value=48 Score=32.25 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 037911 449 SLEIYNELMESLCKCDSVADALLLKDEMVDRNIKP---SLSTYRALICCFCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (609)
...+|..++..+.+.|.++.|...+..+...+... ++...-.-...+...|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666777777777777766666532111 222233334445556666777766666655
No 335
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.96 E-value=79 Score=34.73 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=20.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 037911 355 YCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYG 391 (609)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (609)
|......+-+..+++.+....-.++..-.+.++..|.
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 4455556666666666655444445555555555554
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.92 E-value=1.8 Score=24.46 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=13.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 561 VFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
+..++.+.|++++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555556666666666655543
No 337
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.74 E-value=14 Score=31.92 Aligned_cols=88 Identities=11% Similarity=0.051 Sum_probs=46.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc
Q 037911 459 SLCKCDSVADALLLKDEMVDRNIKPS-----LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD-SQICRVLINGYCM 532 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 532 (609)
-+.+.|++++|..-|.+.++.-. +. ...|..-..++.+.+.++.|+.-..+.++.+ |+ ...+..-..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp-~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCP-STSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCc-cccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 35556677777766666665421 11 1223333345556666666666666665432 22 2222233445556
Q ss_pred cCCHHHHHHHHHHHHHc
Q 037911 533 EKDVNKAEALLGFFAKK 549 (609)
Q Consensus 533 ~g~~~~A~~~~~~~~~~ 549 (609)
..++++|++=++++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 66666666666666654
No 338
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.40 E-value=26 Score=28.76 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=33.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhcCCCHhHHHHHHHHHHHCC
Q 037911 461 CKCDSVADALLLKDEMVDRNIKPSLSTYRAL-ICCFCGIGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~ 515 (609)
...++.+++..+++.|.-. .|+..-...+ ...+...|++++|.++|++..+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3467888888888887753 3443322211 233567788888888888887643
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.74 E-value=3.6 Score=23.52 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=21.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
+|..+...|...|++++|.+.|++.++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4667777888888888888888887753
No 340
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.49 E-value=19 Score=30.61 Aligned_cols=77 Identities=14% Similarity=0.221 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC-----------IDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN 253 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 253 (609)
.+++|+.-|++++... |..-.++..+..++...+. +++|.+.|++... ..|+...|+.-+....
T Consensus 50 miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 50 MIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH--
Confidence 3456666666666643 2233566666666654322 4455555555544 3577777776665542
Q ss_pred CChHHHHHHHHHHHHcC
Q 037911 254 GDVDKVNGFLEKIEEEG 270 (609)
Q Consensus 254 g~~~~a~~~~~~~~~~~ 270 (609)
+|-++..++.+.+
T Consensus 125 ----kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 ----KAPELHMEIHKQG 137 (186)
T ss_dssp ----THHHHHHHHHHSS
T ss_pred ----hhHHHHHHHHHHH
Confidence 4555555555543
No 341
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.43 E-value=0.97 Score=37.33 Aligned_cols=129 Identities=6% Similarity=0.015 Sum_probs=77.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 037911 456 LMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKD 535 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 535 (609)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++... . .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcch
Confidence 566677778888888888888876655667777888888888877777777776221 1 222356667777777
Q ss_pred HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccccc
Q 037911 536 VNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGMER 606 (609)
Q Consensus 536 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 606 (609)
+++|.-++.++-... ..+..+...++++.|.++..+ .+|...|..+++.+...++.
T Consensus 86 ~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 777777665433211 111112233445555533322 34577788888777665543
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.55 E-value=2.6 Score=22.59 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLC 150 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~ 150 (609)
....+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888899999999988775
No 343
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.45 E-value=20 Score=30.55 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCCh-------HHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcC
Q 037911 186 IRESFKTFRKTLDVGFQPSIVSCNFLLNGLL---KLNCI-------DQCWQVYEEMGRIGICPNT-HTFNILTHVFCKNG 254 (609)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~-------~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g 254 (609)
++.|.+.++.....+ +.|...++.-..++. +..+. ++|+.-|++... +.|+. .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 456666666654443 455555444333333 33333 344444555544 45664 56666666665442
Q ss_pred ----C-------hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 255 ----D-------VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 255 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
+ +++|.+.|++.... .|+...|+.-+.... +|-++..++.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 2 34444444444444 566667766665542 244444444443
No 344
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.05 E-value=76 Score=32.01 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037911 379 DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELME 458 (609)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (609)
|.....+++..+..+.++.-...+..+|...| -+...|..++.+|...++ +.-..+++++.+..+. +...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~n-~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENGN-EQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcCc-hhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455555666666656655555666665543 244556666666666644 5555666655544322 3333334444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC---C---HHHHHHHHHHHhcCCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 037911 459 SLCKCDSVADALLLKDEMVDRNIKP---S---LSTYRALICCFCGIGRSGEAVSLMDEMLES-GMLPDSQICRVLINGYC 531 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~~~~~~~p---~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 531 (609)
.|-+ ++...+..+|..+..+-+ | + ...|.-+... -..+.+....+..++... |..--...+..+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI-~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFI-PRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444 555666666655554321 1 0 1133333321 123445555555555432 32233344455556666
Q ss_pred ccCCHHHHHHHHHHHHHc
Q 037911 532 MEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~ 549 (609)
...++++|.+++..+.+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 666677777776655544
No 345
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.91 E-value=16 Score=32.04 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHHhHHHHHH
Q 037911 209 NFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEG--FDPDLVTYNTLIS 283 (609)
Q Consensus 209 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~ 283 (609)
+.-+..+.+.++..+|+...++-++.. +.|..+-..++..+|-.|++++|..-++..-... ..+-...|..+|+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 334555666666677766666655542 3445555566666777777777766555544331 1223344555554
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.48 E-value=28 Score=31.89 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=38.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 037911 387 VQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCK---- 462 (609)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 462 (609)
|+++...++|.+++...-+--+..-+..+.+....|-.|.+.+.+..+.++-.......-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 3444444444444443333322222223344444444555555555555544444332222223335444444433
Q ss_pred -cCCHHHHHHHH
Q 037911 463 -CDSVADALLLK 473 (609)
Q Consensus 463 -~g~~~~A~~~~ 473 (609)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666665554
No 347
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.23 E-value=7.4 Score=36.42 Aligned_cols=89 Identities=13% Similarity=0.023 Sum_probs=58.9
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
-|.+.|++++|+..|.+.+... +.|.+.+..-..+|.+...+..|..=.+.....+ ..-...|..-+.+-...|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 6889999999999999888753 3388888888888999888888877666665421 0112233333444444455666
Q ss_pred HHHHHHHHHHc
Q 037911 259 VNGFLEKIEEE 269 (609)
Q Consensus 259 a~~~~~~~~~~ 269 (609)
|.+=++...+.
T Consensus 184 AKkD~E~vL~L 194 (536)
T KOG4648|consen 184 AKKDCETVLAL 194 (536)
T ss_pred HHHhHHHHHhh
Confidence 66656555544
No 348
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.01 E-value=50 Score=32.97 Aligned_cols=107 Identities=14% Similarity=0.048 Sum_probs=62.4
Q ss_pred HHHhcCChHHHHHHHHHH---HhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCCH---
Q 037911 424 ALCQDNRPFAATSLLERI---GQDGYVPS-----LEIYNELMESLCKCDSVADALLLKDEMVD-------RNIKPSL--- 485 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~---~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~--- 485 (609)
.+.-.|++..|.+++... ...|...+ ...||.+.-.+.+.|.+..+..+|..... .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 344556667777766554 22222212 22345555556666777666666665552 3444421
Q ss_pred --------HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 037911 486 --------STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM 532 (609)
Q Consensus 486 --------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 532 (609)
.+||. .-.|...|++-.|.+.|.+.... +..++..|-.|..+|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 12322 23456778888888888888763 45677788888887764
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.73 E-value=21 Score=31.38 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=21.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHH
Q 037911 248 HVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRI 300 (609)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (609)
..+.+.+.+.+++...++-++.. +.|...-..++..+|-.|+|++|..-++-
T Consensus 9 seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 33444444444444444433331 11233333344444444444444444333
No 350
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=77.59 E-value=52 Score=29.38 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=42.2
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 477 VDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLES-G-----------MLPDSQICRVLINGYCMEKDVNKAEALLG 544 (609)
Q Consensus 477 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (609)
...++.-+......++ +...|+...|+.-++.-... | -.|.+.....++..|. .+++++|.+++.
T Consensus 186 k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~ 262 (333)
T KOG0991|consen 186 KAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILA 262 (333)
T ss_pred HHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHH
Confidence 3334444444444444 34567777777777665541 1 1355555555555443 456777777777
Q ss_pred HHHHcCCCC
Q 037911 545 FFAKKFQIY 553 (609)
Q Consensus 545 ~~~~~~~~~ 553 (609)
.+.+.|..|
T Consensus 263 ~lw~lgysp 271 (333)
T KOG0991|consen 263 ELWKLGYSP 271 (333)
T ss_pred HHHHcCCCH
Confidence 777776654
No 351
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.52 E-value=0.98 Score=37.31 Aligned_cols=128 Identities=17% Similarity=0.143 Sum_probs=83.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 037911 421 LIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGR 500 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 500 (609)
++..+.+.+.+......++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 56667777788888888888877666677888999999999998888888887621 11233456677778888
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC
Q 037911 501 SGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGD 570 (609)
Q Consensus 501 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 570 (609)
+++|.-++.++-... . .+..+...++++.|.+++. . ..++..|..++..+...++
T Consensus 86 ~~~a~~Ly~~~~~~~---~------al~i~~~~~~~~~a~e~~~----~--~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---E------ALEILHKLKDYEEAIEYAK----K--VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHT---T------CSSTSSSTHCSCCCTTTGG----G--CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHH---H------HHHHHHHHccHHHHHHHHH----h--cCcHHHHHHHHHHHHhcCc
Confidence 888888777753211 1 1111334455666653332 1 3457778888877776654
No 352
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.11 E-value=37 Score=27.35 Aligned_cols=72 Identities=18% Similarity=0.050 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCC--hhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 037911 517 LPDSQICRVLINGYCMEKD---VNKAEALLGFFAKKFQIYD--TESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNL 591 (609)
Q Consensus 517 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 591 (609)
.++..+-..+.+++.+..+ ..+.+.+++.+.+.. .|+ ......|.-++.+.|++++++++.+.+++. .||..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcH
Confidence 3444455555555555443 334455555555421 111 123333444555666666666666666543 44443
No 353
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.97 E-value=1.3e+02 Score=33.15 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
--|..|+..|...|++++|.++|.++...
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 35788999999999999999999998864
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.75 E-value=9 Score=23.84 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=11.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 037911 351 LIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 351 li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
|..+|...|+.+.|.+++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 33444455555555555554443
No 355
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=73.57 E-value=78 Score=29.44 Aligned_cols=59 Identities=7% Similarity=0.066 Sum_probs=29.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC-CccCCHhhHHHHHHHHHhcCCHHHHH
Q 037911 272 DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR-NVLPDLVTYTTLMNGLCKEGKVREAH 330 (609)
Q Consensus 272 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~ 330 (609)
.++..+...++..+++.+++..-+++++..... +..-|...|..+|+...+.|+..-..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 344444555555555555555555555544433 33334455555555555555544333
No 356
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.41 E-value=11 Score=33.01 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=49.2
Q ss_pred cCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhh
Q 037911 102 CQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELV 156 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 156 (609)
...|+.....+.+|+.+-....|++..|..++.++...|+.++|.....++...+
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5568888888899998877789999999999999999999999999999998763
No 357
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.28 E-value=1.1e+02 Score=30.83 Aligned_cols=108 Identities=12% Similarity=-0.010 Sum_probs=74.6
Q ss_pred HHHhcCCHHHHHHHHHHHH---HCCC--CCC---HHHHHHHHHHHhcCCCHhHHHHHHHHHHH-------CCCCCCH---
Q 037911 459 SLCKCDSVADALLLKDEMV---DRNI--KPS---LSTYRALICCFCGIGRSGEAVSLMDEMLE-------SGMLPDS--- 520 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~~---~~~~--~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~--- 520 (609)
.+.-.|++.+|.+++...- +.|. .|. -..||.|...+.+.|.+..+..+|.++.+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3555799999999886532 1221 121 23357777778888999888888888774 3555432
Q ss_pred --------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 037911 521 --------QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAED 568 (609)
Q Consensus 521 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 568 (609)
.+|| ..-.|...|+.-.|.+.|.+..... ..++..|-.+..+|...
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHH
Confidence 2233 3445778899999999998888654 56888899999888643
No 358
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.01 E-value=10 Score=24.82 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=19.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037911 561 VFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHS 599 (609)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 599 (609)
+.-++.+.|++++|.+..+.+++. .|+..-...|-..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHHH
Confidence 344556666666666666666643 5665555444443
No 359
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.29 E-value=33 Score=34.98 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=32.0
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHV 249 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 249 (609)
..+.|...+|-.++.+.+... ...+.++-.+.+++.-..+++.|++.|++..+.. +-+...-+.|...
T Consensus 652 ~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 652 LIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLI 719 (886)
T ss_pred HHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHH
Confidence 334445555555555554433 2233344445555555555555555555554432 2233444444433
No 360
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.07 E-value=31 Score=27.25 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 503 EAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 503 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
+..+-+.......+.|++.+...-+.+|.+-+|+..|.++|+-+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44555666666778888888888888888888999999888877755
No 361
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.18 E-value=76 Score=28.29 Aligned_cols=68 Identities=15% Similarity=0.018 Sum_probs=36.9
Q ss_pred HHHHHHHHHHccCCH-------HHHHHHHHHHHHcCCCC----C-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037911 522 ICRVLINGYCMEKDV-------NKAEALLGFFAKKFQIY----D-TESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPN 589 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (609)
.+..+.+.|...|+- ..|.+.|.+.......| + ....-.++....+.|+.++|.+.|.++...+-.+.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 344556666666663 33444454444333221 1 12233444556677888888888888876544444
No 362
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.13 E-value=9 Score=20.65 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=17.3
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.|..+...+...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345566666667777777777766653
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.82 E-value=46 Score=25.17 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=29.3
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037911 283 SSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG 340 (609)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 340 (609)
..+...|++++|+.+.+.+ +.||...|..|.. .+.|-.+++..-+..|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455666666666665444 3566666655533 34555555555555555554
No 364
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.76 E-value=1.2e+02 Score=29.79 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhC--CccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 277 TYNTLISSYCKKGRLNDAFYLYRIMYRR--NVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
.+.-+.+.|...|+++.|++.|.+..+- ..+-....|..+|..-.-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4666667777777777777777775432 0111233455555555566666666666655554
No 365
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.51 E-value=1e+02 Score=29.12 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 453 YNELMESLCKCDSVADALLLKDEM 476 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
+......||+.|+.+.|++.+...
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 334445555555555555555443
No 366
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=69.51 E-value=95 Score=28.73 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHhcCCCHhHHHHHHHHHHHCCC
Q 037911 450 LEIYNELMESLCKCDSVADALLLKDEMVD----RNIKPSLSTYRA-LICCFCGIGRSGEAVSLMDEMLESGM 516 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~ 516 (609)
...+..+...|++.++.+.+.++..+..+ .|.+.|.....+ |.-.|....-.++.++..+.|++.|.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 34455555666666666666555544332 244444332221 11222233334555555555555543
No 367
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=69.35 E-value=1e+02 Score=29.02 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=80.2
Q ss_pred cCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHh----CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccch
Q 037911 102 CQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAW----NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCN 177 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (609)
...++..|...+..+... -+......+...+.. ..+..+|..++....+. + .......+..
T Consensus 53 ~~~~~~~a~~~~~~a~~~----~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--g---~~~a~~~lg~------ 117 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL----GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--G---LAEALFNLGL------ 117 (292)
T ss_pred ccccHHHHHHHHHHhhhc----CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--c---cHHHHHhHHH------
Confidence 345777777777777641 122444445555533 34577788888866543 2 2223333333
Q ss_pred hHHHH----hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------ChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 037911 178 WAYVK----VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN-------CIDQCWQVYEEMGRIGICPNTHTFNIL 246 (609)
Q Consensus 178 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~l 246 (609)
.|.. ..+..+|..+|+++.+.|..+...+...+...+..-+ +...|...|.++...+ +......+
T Consensus 118 -~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~l 193 (292)
T COG0790 118 -MYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLL 193 (292)
T ss_pred -HHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHH
Confidence 2322 3378888888888888775443233344444443321 2235666666666554 33333334
Q ss_pred HHHHHH----cCChHHHHHHHHHHHHcC
Q 037911 247 THVFCK----NGDVDKVNGFLEKIEEEG 270 (609)
Q Consensus 247 ~~~~~~----~g~~~~a~~~~~~~~~~~ 270 (609)
...|.. ..+.++|...|....+.|
T Consensus 194 g~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 194 GRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 333322 235666666666666654
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.93 E-value=13 Score=26.53 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=21.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCh--hcHHHHHHHHHhcCCHHHHHHH
Q 037911 532 MEKDVNKAEALLGFFAKKFQIYDT--ESYNAVFNMFAEDGDLSKLMEL 577 (609)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~ 577 (609)
...+.++|+..|....+.-..+.. .++-.++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555544322111 2344455555555555555443
No 369
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=67.67 E-value=1.1e+02 Score=28.66 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccC
Q 037911 327 REAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEG 394 (609)
Q Consensus 327 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 394 (609)
.-|.++|+..... ...+.++..+.+.+.-+.-.++| +|+-.+-......+...|
T Consensus 184 ~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 184 SFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred HHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhh
Confidence 3455666665532 12345555554443333333333 556555555555444443
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.37 E-value=1e+02 Score=28.21 Aligned_cols=88 Identities=14% Similarity=0.158 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCccCHH
Q 037911 314 TTLMNGLCKEGKVREAHQLFHRMVHRGLSP-----------DIVSYNTLIFAYCKEGKMQESKSLLYEMMGN-GIYPDTF 381 (609)
Q Consensus 314 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 381 (609)
+.|...|...+.+....++++++....... =...|..=|.+|....+-..-..++++.+.. ..-|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 445666666677777777777765431110 1245666677777777666666777765532 1233333
Q ss_pred HHHHHHH-----HHHccCCHHHHHHH
Q 037911 382 TCQIIVQ-----GYGKEGRLLSALNL 402 (609)
Q Consensus 382 ~~~~l~~-----~~~~~~~~~~A~~~ 402 (609)
... +|+ ...+.|++++|-.-
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhH
Confidence 332 233 23566777777543
No 371
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.02 E-value=38 Score=26.80 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 037911 538 KAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600 (609)
Q Consensus 538 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 600 (609)
+..+.++.+......|++.....-++++.+.+++..|.++|+-+..+ ..+....|-.+++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Confidence 45566666777777999999999999999999999999999998755 334444577766654
No 372
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=66.76 E-value=37 Score=29.70 Aligned_cols=74 Identities=8% Similarity=0.024 Sum_probs=38.7
Q ss_pred CCCCCCchhhHHHHHhhhccCCChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCC
Q 037911 52 LPETQNPNKIVDLICSSLKKGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPT 125 (609)
Q Consensus 52 ~p~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~ 125 (609)
+|+......+.+.+|..++..+.........+.......+...+...+....+....-...+..+.....+..+
T Consensus 65 Y~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~f~YS 138 (206)
T PLN03060 65 YPNATDRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQSASGIADFNSGDGEVEAVLKDIAERAAGKTKFHYS 138 (206)
T ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcccccchHHHHHHHHhhcCCCcchH
Confidence 34444555677777777766554444444444445556666677766655443333333444444333333333
No 373
>PRK12798 chemotaxis protein; Reviewed
Probab=66.50 E-value=1.4e+02 Score=29.50 Aligned_cols=205 Identities=10% Similarity=0.005 Sum_probs=99.7
Q ss_pred CCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHH-HhCCChhHHHHHHHHHHHhhCCCCCcHHhHH
Q 037911 89 HLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHIL-AWNNKFSFAMKMLCELVELVKDCPHSVDVFQ 167 (609)
Q Consensus 89 ~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 167 (609)
+.+...+-+++....|+...|.+.+-.+.- ...++....|..|+.+- ....+..+|+++|+...-..++.-..+....
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~-~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALR 189 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAP-EYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALR 189 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCCh-hhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 444555556666666777777777665553 22344555555554443 3445666777777776655444434444444
Q ss_pred HHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCC---hHHHHHHHHHHhhCCCCCCHH
Q 037911 168 DLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCN---FLLNGLLKLNC---IDQCWQVYEEMGRIGICPNTH 241 (609)
Q Consensus 168 ~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~ 241 (609)
.-+. .....|+.+++..+-.+...+ +..++...| .+..++.+.++ .+.-..++..|.. .--..
T Consensus 190 Rsi~-------la~~~g~~~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~ 258 (421)
T PRK12798 190 RSLF-------IAAQLGDADKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRE 258 (421)
T ss_pred HhhH-------HHHhcCcHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHH
Confidence 4443 456677777666655554432 233333322 12223333322 2222233333221 11234
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HhHHHHHHHHHhcCCHhHHHHHHHHHhhCCcc
Q 037911 242 TFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDL-----VTYNTLISSYCKKGRLNDAFYLYRIMYRRNVL 307 (609)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 307 (609)
.|..+...-.-.|+.+-|.-.-++.....-..+. ..|.... -.-..+++++++.+..+....+.
T Consensus 259 lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa--~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 259 LYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAA--LVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHH--ccCcccHHHHHHHHhcCChhhCC
Confidence 5666666666667776666666655544211111 1122111 11234466666666666554433
No 374
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=66.06 E-value=1.6e+02 Score=29.94 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=61.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037911 272 DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTL 351 (609)
Q Consensus 272 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 351 (609)
..|....-+++..+..+..+.-+..+..+|..-|- +...|..++.+|..+ ..+.-..+|+++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 34555666777777777777777777777776542 556677777777766 446666777777665332 33333334
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC
Q 037911 352 IFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
...| ..++.+.+...|.++...
T Consensus 139 a~~y-Ekik~sk~a~~f~Ka~yr 160 (711)
T COG1747 139 ADKY-EKIKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHH-HHhchhhHHHHHHHHHHH
Confidence 4444 336677777777766644
No 375
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.49 E-value=40 Score=28.79 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=36.7
Q ss_pred HhHHHHHHHHHHHCCCCCC--HH-----HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 037911 501 SGEAVSLMDEMLESGMLPD--SQ-----ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAED 568 (609)
Q Consensus 501 ~~~A~~~~~~~~~~~~~p~--~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 568 (609)
.+.|+.+|+.+.+.--.|. .. .-...+-.|.+.|.+++|.++++.... .++......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHc
Confidence 4668888887776432221 11 113445667788888888888887775 33443334433334333
No 376
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=64.99 E-value=1.5e+02 Score=29.39 Aligned_cols=91 Identities=19% Similarity=0.102 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 488 YRALICCFCGIGRSGEAVSLMDEMLESGML--PDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
...|+.-|...|+..+|.++++++ |++ -....+.+++.+.-+.|+-...+.+++...+.| ..|.+.+-.+|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf 584 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhh
Confidence 456777888899999999999887 433 234567888888888888887777777777554 44556666666
Q ss_pred HhcC--------CHHHHHHHHHHHHHcC
Q 037911 566 AEDG--------DLSKLMELQKRFLRLG 585 (609)
Q Consensus 566 ~~~g--------~~~~A~~~~~~m~~~g 585 (609)
.+-. +...|.+.|+...+.+
T Consensus 585 ~RV~dsl~DlsLDvPna~ekf~~~Ve~~ 612 (645)
T KOG0403|consen 585 ERVYDSLPDLSLDVPNAYEKFERYVEEC 612 (645)
T ss_pred hhhhccCcccccCCCcHHHHHHHHHHHH
Confidence 5432 3445556665555443
No 377
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.64 E-value=2.2e+02 Score=31.14 Aligned_cols=225 Identities=16% Similarity=0.067 Sum_probs=119.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC----H---HHHHHHHHH-HHHcCChHHHHHHHHHHHHC----CCccCHHHHHHHHH
Q 037911 321 CKEGKVREAHQLFHRMVHRGLSPD----I---VSYNTLIFA-YCKEGKMQESKSLLYEMMGN----GIYPDTFTCQIIVQ 388 (609)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~g~~p~----~---~~~~~li~~-~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~ 388 (609)
....++++|..++.+....-..|+ . ..++.+-.. ....|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 456788999998888776422222 1 123332221 23568889998888877654 22335566777778
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH---H--HHHHHhcCCh--HHHHHHHHHHHh-----CCC-CCCHHHHHH
Q 037911 389 GYGKEGRLLSALNLVVELQRFGVSISRDIYDY---L--IVALCQDNRP--FAATSLLERIGQ-----DGY-VPSLEIYNE 455 (609)
Q Consensus 389 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---l--l~~~~~~~~~--~~a~~~~~~~~~-----~~~-~~~~~~~~~ 455 (609)
+..-.|++++|..+..+..+..-.-+...+.. + ...+...|+. .+....+..... ... .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88889999999988877765422223322222 2 1234455532 222223332211 110 122344455
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhcCCCHhHHHHHHHHHHHCCCCC----CHHHHHHH--
Q 037911 456 LMESLCKC-DSVADALLLKDEMVDRNIKPSLSTY--RALICCFCGIGRSGEAVSLMDEMLESGMLP----DSQICRVL-- 526 (609)
Q Consensus 456 l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l-- 526 (609)
+..++.+. +...++..-+.--......|-..-+ ..|+......|+.++|...+.++......+ +...-...
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555542 1222222222222222222222222 356677888999999999998887643222 22222222
Q ss_pred HHHHHccCCHHHHHHHHHH
Q 037911 527 INGYCMEKDVNKAEALLGF 545 (609)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~ 545 (609)
+......|+.+.|.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2233457888888777665
No 378
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.51 E-value=1.6e+02 Score=29.49 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=82.5
Q ss_pred HHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037911 134 HILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLN 213 (609)
Q Consensus 134 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 213 (609)
.--...|+.-.|-+-+...++..++.|.....+..+ +...|.++.+...+...... +.....+...+++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i----------~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r 365 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI----------FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLR 365 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH----------HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHH
Confidence 333456777777776667776656665555555443 45788889888887765442 2344557778888
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 037911 214 GLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEG 270 (609)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 270 (609)
...+.|++++|...-+-|....++ +...........-..|-++++.-.++++...+
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888889999999988888776553 33333333333445577888888888876553
No 379
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=64.15 E-value=1.4e+02 Score=28.71 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=12.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC
Q 037911 565 FAEDGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~ 586 (609)
+..+|..+.|+.+++-+++.++
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHHc
Confidence 3455666666666666665543
No 380
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.63 E-value=75 Score=25.43 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 538 KAEALLGFFAKKFQIYD-TESYNAVFNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 538 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 581 (609)
.+.++|+.|...++... ...|......+...|++++|.++|+.-
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 78888888888777443 356778888888888888888888753
No 381
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=63.37 E-value=80 Score=31.39 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=17.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHh
Q 037911 132 IVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
++--+...|.|+.|.++|.+-+-.
T Consensus 124 laadhvAAGsFetAm~LLnrQiGi 147 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNRQIGI 147 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHHHC-B
T ss_pred cHHHHHHhCCHHHHHHHHHHHhCc
Confidence 456678899999999999886644
No 382
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.83 E-value=26 Score=26.29 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=36.6
Q ss_pred CCChhHH----HHHHHHhhhcCCCC---CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 103 QSDSVSA----LTFFNWVKNDLEIK---PTSSNYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 103 ~~~~~~A----~~~f~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
.+|+..| .++|+....+.... +-..+...++......|++++|...++++++.
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4677777 56677766543222 12344455677788889999999999999876
No 383
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.13 E-value=2.2e+02 Score=30.38 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=76.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 037911 458 ESLCKCDSVADALLLKDEMVDRNIKPSL--STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKD 535 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 535 (609)
-++..-|+-++|..+.++|.... .|-. .-.-.+..+|+-.|+.....+++.-.+. ....|..-+....-++.-..+
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecC
Confidence 34455577788888888887542 1221 1233445678888888777777777664 334555556666667777778
Q ss_pred HHHHHHHHHHHHHcCCCCChhcHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 037911 536 VNKAEALLGFFAKKFQIYDTESYNA--VFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 536 ~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.+....+.+.+.+.. .|-+..=.+ |.-+|+-.| ..+|+.+++-|..
T Consensus 587 p~~~~s~V~lLses~-N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESY-NPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhhchHHHHHHhhhc-ChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 888888887777543 444432222 333344444 5678888888863
No 384
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.81 E-value=31 Score=21.96 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=22.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037911 565 FAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIH 598 (609)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 598 (609)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777777777666666654
No 385
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.66 E-value=18 Score=35.79 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=61.9
Q ss_pred HHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037911 135 ILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNG 214 (609)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 214 (609)
.....+.|+.|..++.++++. .|.....|..-.. ++.+.+++..|+.-+.++++.. +--+..|-.=..+
T Consensus 13 ~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~-------a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a 81 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRAL-------AHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTA 81 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc---CCcceeeechhhh-------hheeechhhhHHHHHHhhhhcC-chhhheeeeccHH
Confidence 344456777777777777765 2223333333223 6777888888887777777754 2223344444445
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 037911 215 LLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVF 250 (609)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 250 (609)
+...+.+.+|+..|+.... +.|+..-...++.-|
T Consensus 82 ~m~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 82 VMALGEFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHhHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 5566667777777777665 457766666555544
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.44 E-value=20 Score=24.30 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 559 NAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
-.++.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334555555555555555555554
No 387
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.88 E-value=2.6e+02 Score=30.67 Aligned_cols=225 Identities=14% Similarity=0.079 Sum_probs=122.6
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCH-------HHHHHHHH-HHHHcCChHHHHHHHHHHHHc----CCCCCHHhHHHHHH
Q 037911 216 LKLNCIDQCWQVYEEMGRIGICPNT-------HTFNILTH-VFCKNGDVDKVNGFLEKIEEE----GFDPDLVTYNTLIS 283 (609)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 283 (609)
....++++|..+..++...--.|+. ..++.|-. .....|++++|.++.+..... -..+.+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4568899999998887654222222 13333322 233468889999888876654 23345677788888
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCccCCHhhHHH---H--HHHHHhcCC--HHHHHHHHHHHHHC--CCC----CCHHHHHH
Q 037911 284 SYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTT---L--MNGLCKEGK--VREAHQLFHRMVHR--GLS----PDIVSYNT 350 (609)
Q Consensus 284 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~---l--l~~~~~~~~--~~~a~~~~~~m~~~--g~~----p~~~~~~~ 350 (609)
+..-.|++++|..+..+..+..-.-+...+.. + ...+...|+ ..+....|...... +-. +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88899999999999887766422223333322 2 223445563 23333344333322 011 12234455
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHHCCCccCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHH
Q 037911 351 LIFAYCKE-GKMQESKSLLYEMMGNGIYPDTFTC--QIIVQGYGKEGRLLSALNLVVELQRFGVS----ISRDIYDYLIV 423 (609)
Q Consensus 351 li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~ 423 (609)
+..++.+. +...++..-+.-.......|-.... ..|+......|++++|...+.++...... ++...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555542 1222222223222222222222222 36778888999999999999888664322 23222223333
Q ss_pred --HHHhcCChHHHHHHHHH
Q 037911 424 --ALCQDNRPFAATSLLER 440 (609)
Q Consensus 424 --~~~~~~~~~~a~~~~~~ 440 (609)
.....|+...+...+.+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 33456776666665544
No 388
>PHA02875 ankyrin repeat protein; Provisional
Probab=60.55 E-value=96 Score=31.09 Aligned_cols=209 Identities=15% Similarity=0.163 Sum_probs=95.4
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCC
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVS--CNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTH--TFNILTHVFCKNGD 255 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g~ 255 (609)
.++.|..+-+ +.+.+.|..++... ....+...+..|+.+-+. .+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3455665443 44445566665433 233455556677765443 333445444322 11234555667788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhh--HHHHHHHHHhcCCHHHHHHHH
Q 037911 256 VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVT--YTTLMNGLCKEGKVREAHQLF 333 (609)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~ 333 (609)
.+.+..+++.-.......+.. -.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..+
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L- 154 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKD-GMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL- 154 (413)
T ss_pred HHHHHHHHHcCCcccccccCC-CCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-
Confidence 877666654321110000111 122333445566653 4444455565544321 12344555667776554443
Q ss_pred HHHHHCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHH---HHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 334 HRMVHRGLSPDI---VSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFT---CQIIVQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 334 ~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~ 407 (609)
.+.|..++. .-.+. +...+..|+.+ +.+.+++.|..++... ...++...+..|+.+ +.+.+.
T Consensus 155 ---l~~g~~~~~~d~~g~Tp-L~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll 222 (413)
T PHA02875 155 ---IDHKACLDIEDCCGCTP-LIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFI 222 (413)
T ss_pred ---HhcCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHH
Confidence 344443332 22222 23334556654 3444555665554322 123333334455543 344445
Q ss_pred HCCCCCC
Q 037911 408 RFGVSIS 414 (609)
Q Consensus 408 ~~~~~~~ 414 (609)
+.|..++
T Consensus 223 ~~gad~n 229 (413)
T PHA02875 223 KRGADCN 229 (413)
T ss_pred HCCcCcc
Confidence 5565554
No 389
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=60.36 E-value=79 Score=30.01 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=36.9
Q ss_pred HHHHHHhcCCCHhHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHHH
Q 037911 490 ALICCFCGIGRSGEAVSLMDEMLES---GMLPDSQICR--VLINGYCMEKDVNKAEALLGFFAK 548 (609)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 548 (609)
.++....+.++.++|+++++++.+. --.|+.+.|. .....+...||..++.+.+++..+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444455566778888888777653 2245555553 344555567777777777776665
No 390
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.02 E-value=1.6e+02 Score=27.69 Aligned_cols=152 Identities=15% Similarity=0.113 Sum_probs=81.2
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK----LNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK--- 252 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~--- 252 (609)
....+.+..+...+......+.. .....+...+.. ..+..+|.+.|..+.+.|. ......|...|..
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~g 124 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRG 124 (292)
T ss_pred ccccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCC
Confidence 34566777888888877764422 334444444433 3456778888887766553 2333334444444
Q ss_pred -cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-------CHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh--
Q 037911 253 -NGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKG-------RLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK-- 322 (609)
Q Consensus 253 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-- 322 (609)
..+..+|...+++..+.|..+...+...+...|.... +...|...|.+....+ +......+...|..
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGL 201 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCC
Confidence 3477788888888887774432222333333333321 2235666666666554 22333333333322
Q ss_pred --cCCHHHHHHHHHHHHHCC
Q 037911 323 --EGKVREAHQLFHRMVHRG 340 (609)
Q Consensus 323 --~~~~~~a~~~~~~m~~~g 340 (609)
..+.++|..+|....+.|
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 235566666666666655
No 391
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.56 E-value=28 Score=23.65 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=8.0
Q ss_pred HHHHHhcCCHhHHHHHHHHH
Q 037911 282 ISSYCKKGRLNDAFYLYRIM 301 (609)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~~ 301 (609)
|.+|...|++++|.++++++
T Consensus 30 I~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 34444444444444444333
No 392
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.50 E-value=49 Score=21.62 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
....++-++.+.|++++|.+..+.+++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4456777889999999999999999987
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.08 E-value=52 Score=24.59 Aligned_cols=55 Identities=15% Similarity=0.249 Sum_probs=35.0
Q ss_pred HhCCChhHHHHHHHHHHHhhCCCCC-c-----HHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 137 AWNNKFSFAMKMLCELVELVKDCPH-S-----VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 137 ~~~~~~~~A~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
.+.|++.+|.+.+............ . ......+.. .+...|+.++|+..+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~-------~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAE-------LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHH-------HHHHhCCHHHHHHHHHHHHH
Confidence 4678999997777776654222111 1 111222333 67889999999999998875
No 394
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.90 E-value=1.9e+02 Score=28.30 Aligned_cols=209 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred hCCChhHHHHHHHHHHHhhCCC---------CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHH-----------
Q 037911 138 WNNKFSFAMKMLCELVELVKDC---------PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTL----------- 197 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~----------- 197 (609)
....+.++...|..++..+... |-..+++..+-. .+...|+.+.|.+++++++
T Consensus 6 hs~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~-------v~~~~gd~~~A~~lleRALf~~e~~~~~~F 78 (360)
T PF04910_consen 6 HSKAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSE-------VYRQQGDHAQANDLLERALFAFERAFHPSF 78 (360)
T ss_pred CCHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred --------------hCCCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-HcCChHHH
Q 037911 198 --------------DVGFQPSIVSCNFLLN---GLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFC-KNGDVDKV 259 (609)
Q Consensus 198 --------------~~~~~~~~~~~~~ll~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~g~~~~a 259 (609)
.....-|...|.++.+ .+.+.|.+..|.++.+-+...+..-|......+|+.|+ +.++++-.
T Consensus 79 ~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~L 158 (360)
T PF04910_consen 79 SPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWL 158 (360)
T ss_pred hhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHH
Q ss_pred HHHHHHHHHcCCCCC------HHhHHHHHHHHHhcCC--------------HhHHHHHHHHHhhCCccCCHhhHHHHHHH
Q 037911 260 NGFLEKIEEEGFDPD------LVTYNTLISSYCKKGR--------------LNDAFYLYRIMYRRNVLPDLVTYTTLMNG 319 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~--------------~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 319 (609)
+++.+..... ...+ ...|+..+..+...+. .+.|...+.+.... -..+...|+..
T Consensus 159 i~~~~~~~~~-~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~ 233 (360)
T PF04910_consen 159 IDFSESPLAK-CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDK 233 (360)
T ss_pred HHHHHhHhhh-hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 037911 320 LCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKE 358 (609)
Q Consensus 320 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 358 (609)
+.-..+..-...-.-.-...+..+.......++..|...
T Consensus 234 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lYv~R 272 (360)
T PF04910_consen 234 LGISPDSSVSNHPHFSPSSWSSEPPSDSLKLLTELYVER 272 (360)
T ss_pred hccccchhhhcCCCCcccccccCCchhHHHHHHHHHHHH
No 395
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.81 E-value=1.5e+02 Score=27.11 Aligned_cols=188 Identities=10% Similarity=0.048 Sum_probs=89.3
Q ss_pred CHhHHHHHHHHHhhCCccCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHHcCCh
Q 037911 290 RLNDAFYLYRIMYRRNVLPDL---VTYTTLMNGLCKEGKVREAHQLFHRMVHR---GL--SPDIVSYNTLIFAYCKEGKM 361 (609)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~--~p~~~~~~~li~~~~~~g~~ 361 (609)
+.++|+.-|.+..+....-.. .+...++....+.|++++.+..+.++... .+ .-+..+.|+++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 455555555555443211111 12234455555666666666555555421 00 11233445555544444444
Q ss_pred HHHHHHHHHHHH----C-CCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHH
Q 037911 362 QESKSLLYEMMG----N-GIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGV-----------SISRDIYDYLIVAL 425 (609)
Q Consensus 362 ~~A~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~ll~~~ 425 (609)
+--...++.-++ . +-..-..|-..|...|...+.+.+..++++++.+.-- ..-...|..-|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 433333332111 0 1112223445566667777777777677666643210 11134566667777
Q ss_pred HhcCChHHHHHHHHHH-HhCCCCCCHHHHHHHHH----HHHhcCCHHHHH-HHHHHHH
Q 037911 426 CQDNRPFAATSLLERI-GQDGYVPSLEIYNELME----SLCKCDSVADAL-LLKDEMV 477 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~-~~~~~~~ 477 (609)
....+-.....+++.. .-..-.|.+.....+-. ...+.|++++|. .+|+...
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 7777655555666655 22222455544433322 234567787775 3444444
No 396
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.47 E-value=2.9e+02 Score=30.23 Aligned_cols=43 Identities=16% Similarity=0.020 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037911 398 SALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERI 441 (609)
Q Consensus 398 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
.+..+++-....-..-++..++.++..|++..+ +.....++..
T Consensus 611 ~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~-~~ll~~le~~ 653 (911)
T KOG2034|consen 611 QAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER-DDLLLYLEII 653 (911)
T ss_pred HHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc-cchHHHHHHH
Confidence 344444333333223455666666666666555 4444444333
No 397
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=57.06 E-value=1.8e+02 Score=32.94 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=29.2
Q ss_pred CCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHC
Q 037911 289 GRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEG--KVREAHQLFHRMVHR 339 (609)
Q Consensus 289 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~ 339 (609)
++++..-+.+.+..+.... ...-...++.+|++.+ ++++|++...++.+.
T Consensus 792 ~KVn~ICdair~~l~~~~~-~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKPKD-KDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cHHHHHHHHHHHHhccccc-chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3444444444443332111 2334456777788777 788888888888765
No 398
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=57.02 E-value=43 Score=34.23 Aligned_cols=103 Identities=15% Similarity=-0.002 Sum_probs=68.6
Q ss_pred hcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHH
Q 037911 496 CGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
...|+...|..++..+....-.-..+....|.....+.|-...|-.++.+..... ...+-++..+.+++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3468888888888877643211122334556777777788888888887777654 445566777888888888999999
Q ss_pred HHHHHHHHcCCCCC-hhhHHHHHHHHh
Q 037911 576 ELQKRFLRLGFAPN-NLTCKYMIHSLW 601 (609)
Q Consensus 576 ~~~~~m~~~g~~p~-~~~~~~ll~~~~ 601 (609)
+.|++.++. .|+ ...-+.|+..-|
T Consensus 697 ~~~~~a~~~--~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKL--TTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhc--CCCChhhHHHHHHHHH
Confidence 999888865 333 334444444333
No 399
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.95 E-value=2.2e+02 Score=28.71 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=63.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhcCCCCCC-----HHhHHHHHHHHHhCC-ChhHHHHHHHHHHHhhCCCCCc-HHhHH
Q 037911 95 ISRVLLRCQSDSVSALTFFNWVKNDLEIKPT-----SSNYCLIVHILAWNN-KFSFAMKMLCELVELVKDCPHS-VDVFQ 167 (609)
Q Consensus 95 ~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~-----~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 167 (609)
+-.+|.+..++.+.|...++.+......-|+ ..++..+.+.+.... .+..|..++.+.++...+.|.. -....
T Consensus 52 Lg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllf 131 (629)
T KOG2300|consen 52 LGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLF 131 (629)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHH
Confidence 4446677778999998888766543222333 367778888887776 8899999999999885555532 23344
Q ss_pred HHhhccccchhHHHHhCCHHHHHHHHH
Q 037911 168 DLISCTEDCNWAYVKVGLIRESFKTFR 194 (609)
Q Consensus 168 ~l~~~~~~~~~~~~~~g~~~~A~~~~~ 194 (609)
.++. .+.-..++..|.+++.
T Consensus 132 QLaq-------l~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 132 QLAQ-------LHIIDKDFPSALELLA 151 (629)
T ss_pred HHHH-------HHhhhccchhHHHHHh
Confidence 4555 5666777888877743
No 400
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.64 E-value=9.4 Score=35.90 Aligned_cols=87 Identities=17% Similarity=0.093 Sum_probs=46.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHH
Q 037911 462 KCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQ-ICRVLINGYCMEKDVNKAE 540 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 540 (609)
..|.++.|++.|...++.+. +....|..-..++.+.++...|++=+..... +.||.. -|-.-..+-.-.|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 34666666666666665542 3334455555566666666666666666553 233322 1222223333456666666
Q ss_pred HHHHHHHHcCC
Q 037911 541 ALLGFFAKKFQ 551 (609)
Q Consensus 541 ~~~~~~~~~~~ 551 (609)
..+....+.+.
T Consensus 203 ~dl~~a~kld~ 213 (377)
T KOG1308|consen 203 HDLALACKLDY 213 (377)
T ss_pred HHHHHHHhccc
Confidence 66666665543
No 401
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.57 E-value=2.2e+02 Score=28.57 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=21.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 037911 463 CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIG 499 (609)
Q Consensus 463 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 499 (609)
..+.+.|+.++..|.+.|..|....-..++.++...|
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3667777777777777766555444444444443333
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=55.92 E-value=1.8e+02 Score=27.22 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=28.9
Q ss_pred HHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 037911 490 ALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGF 545 (609)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 545 (609)
.....|..+|.+.+|.++.+..+... +.+...+-.|+..+...||--.|.+-++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 33445555666666666666555432 34445555555566666654444444433
No 403
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.83 E-value=1.2e+02 Score=30.01 Aligned_cols=18 Identities=22% Similarity=0.104 Sum_probs=9.2
Q ss_pred HhcCChHHHHHHHHHHHh
Q 037911 426 CQDNRPFAATSLLERIGQ 443 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~ 443 (609)
.+.+++..|..+++.+..
T Consensus 142 ~n~~~y~aA~~~l~~l~~ 159 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLR 159 (379)
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 344555555555555543
No 404
>PRK10941 hypothetical protein; Provisional
Probab=55.37 E-value=1.4e+02 Score=27.86 Aligned_cols=76 Identities=13% Similarity=-0.049 Sum_probs=41.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHh
Q 037911 524 RVLINGYCMEKDVNKAEALLGFFAKKFQIYD-TESYNAVFNMFAEDGDLSKLMELQKRFLRLG-FAPNNLTCKYMIHSLW 601 (609)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~ 601 (609)
+.+-.+|.+.++++.|.++.+.+... .|+ +.-+.--.-.|.+.|.+..|..-++..++.- -.|+.......+.++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 44555566666666666666666644 332 2334444445666666666666666665432 3344444555555444
No 405
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.07 E-value=2.3e+02 Score=28.33 Aligned_cols=209 Identities=14% Similarity=0.104 Sum_probs=99.0
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--hHHHHHHHHHhcCC
Q 037911 215 LLKLNCIDQCWQVYEEMGRIGICPNTHT--FNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLV--TYNTLISSYCKKGR 290 (609)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~ 290 (609)
.++.|+.+.+..++ +.|..++... ....+...+..|+.+-+. .+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34456665555444 4465555422 233455566778876443 444455544432 12234556677888
Q ss_pred HhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCChHHHHHHH
Q 037911 291 LNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSY--NTLIFAYCKEGKMQESKSLL 368 (609)
Q Consensus 291 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~ 368 (609)
.+.+..+++.-....-..+..- .+.+...+..|+.+ +++.+.+.|..|+.... .+.+...+..|+.+-+..+
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L- 154 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL- 154 (413)
T ss_pred HHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-
Confidence 8776665543211100001111 23344456667764 44555666766554221 2334455677876654444
Q ss_pred HHHHHCCCccCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHH
Q 037911 369 YEMMGNGIYPDT---FTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDI---YDYLIVALCQDNRPFAATSLLERIG 442 (609)
Q Consensus 369 ~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~ 442 (609)
.+.|..++. .-.+.+. ..+..|+.+ +++.+.+.|..++... ....+...+..|+.+- .+-+.
T Consensus 155 ---l~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll 222 (413)
T PHA02875 155 ---IDHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFI 222 (413)
T ss_pred ---HhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHH
Confidence 344443322 2222332 334456544 4444555665554322 1234444455566332 33334
Q ss_pred hCCCCCC
Q 037911 443 QDGYVPS 449 (609)
Q Consensus 443 ~~~~~~~ 449 (609)
+.|..++
T Consensus 223 ~~gad~n 229 (413)
T PHA02875 223 KRGADCN 229 (413)
T ss_pred HCCcCcc
Confidence 4454444
No 406
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.13 E-value=1.8e+02 Score=26.88 Aligned_cols=26 Identities=23% Similarity=0.028 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037911 448 PSLEIYNELMESLCKCDSVADALLLK 473 (609)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~ 473 (609)
-++.....+...|.+.|++.+|+..|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35666677777777777777776554
No 407
>PRK11619 lytic murein transglycosylase; Provisional
Probab=53.98 E-value=3.1e+02 Score=29.49 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=141.1
Q ss_pred ChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC
Q 037911 105 DSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG 184 (609)
Q Consensus 105 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 184 (609)
.++....|++. .++.+.....-..-+..+++.+++++...++ ...|.+...-..... +....|
T Consensus 81 ~~~ev~~Fl~~---~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~-------~~~p~~~~~~c~~~~-------A~~~~G 143 (644)
T PRK11619 81 PAVQVTNFIRA---NPTLPPARSLQSRFVNELARREDWRGLLAFS-------PEKPKPVEARCNYYY-------AKWATG 143 (644)
T ss_pred CHHHHHHHHHH---CCCCchHHHHHHHHHHHHHHccCHHHHHHhc-------CCCCCCHHHHHHHHH-------HHHHcC
Confidence 45555555432 2222222233334455666777776555422 123455555555555 777889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH--HHHHHHHhhCCCCCCHHHHHHHHHHHHH----------
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQC--WQVYEEMGRIGICPNTHTFNILTHVFCK---------- 252 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a--~~~~~~m~~~~~~~~~~~~~~l~~~~~~---------- 252 (609)
+.++|....+.+--.| ......++.++..+.+.|..... ++=++.+...| +...-..+...+..
T Consensus 144 ~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~ 219 (644)
T PRK11619 144 QQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALI 219 (644)
T ss_pred CHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHH
Confidence 9888887777776655 44566788888888766654432 22222223222 22222222221100
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--hcCCHhHHHHHHHHHhhCC-ccCC--HhhHHHHHHHHHhcCC
Q 037911 253 --NGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYC--KKGRLNDAFYLYRIMYRRN-VLPD--LVTYTTLMNGLCKEGK 325 (609)
Q Consensus 253 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~~~ 325 (609)
..+...+...+.. +.++...-..++.++. ...+.+.|..++....... ..+. ...+..+.......+.
T Consensus 220 al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~ 294 (644)
T PRK11619 220 KLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDV 294 (644)
T ss_pred HHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccC
Confidence 0111111111111 1122211111111221 2445688888888765432 2211 2233444444444433
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 037911 326 VREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVE 405 (609)
Q Consensus 326 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 405 (609)
.+++...++...... .|......-+......++++.+...+..|.... .-...-..-+.+++...|+.++|...|+.
T Consensus 295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 556666666654332 244445555556568888888888888875432 22444555667777778999999998888
Q ss_pred HHH
Q 037911 406 LQR 408 (609)
Q Consensus 406 ~~~ 408 (609)
+..
T Consensus 372 ~a~ 374 (644)
T PRK11619 372 LMQ 374 (644)
T ss_pred Hhc
Confidence 743
No 408
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.90 E-value=83 Score=23.37 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=29.4
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhh
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLIS 171 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (609)
.|...-..+...+...|++++|++.+-++++...++ .+...-..++.
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~-~~~~ar~~ll~ 66 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDY-EDDAARKRLLD 66 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC-CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-cccHHHHHHHH
Confidence 366777788888888888888888888888663222 23333444444
No 409
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.98 E-value=1.3e+02 Score=24.79 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=28.1
Q ss_pred ChhcHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 037911 554 DTESYNAVFNMFAEDGD-LSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKG 603 (609)
Q Consensus 554 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 603 (609)
+...|..++.+..+..- ---+..+|.-|.+.+++++..-|..+|.+..+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44556666666644443 223455666666656666666666666655544
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.90 E-value=1.7e+02 Score=28.99 Aligned_cols=60 Identities=18% Similarity=0.120 Sum_probs=41.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhCCCCCcH--HhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVKDCPHSV--DVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
.+..+.+.++|..|.++++++..+ .+... ..+..+..++ .+....++++|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~~~~~~~l~~~y-----~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR---LPGREEYQRYKDLCEGY-----DAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh---CCchhhHHHHHHHHHHH-----HHHHccCHHHHHHHHHHHHHH
Confidence 344566889999999999999875 22222 3455554422 456788899999999987763
No 411
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=52.43 E-value=3.4e+02 Score=29.50 Aligned_cols=199 Identities=12% Similarity=0.022 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFC---KNGDVDKVNGFLEKIEEEGFDPDLVTYN 279 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 279 (609)
-+...++.||..+.+.|++++....-.+|.+. .+.+...|...+.... ..++..++..+|++....-. ++..|-
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~ 187 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWE 187 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHH
Confidence 45556778888999999998888777777764 3556666666555433 34777888888888776533 333333
Q ss_pred HHHHHH-------HhcCCHhHHHHHHHHHhhC-CccCC--HhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 037911 280 TLISSY-------CKKGRLNDAFYLYRIMYRR-NVLPD--LVTY---TTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIV 346 (609)
Q Consensus 280 ~li~~~-------~~~g~~~~a~~~~~~~~~~-~~~p~--~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 346 (609)
-.+..+ -+.++++....+|.+.+.. |..-+ ...| .-+-..+..+-..+....+|..-...++ |..
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~--D~~ 265 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL--DED 265 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc--hhh
Confidence 333322 2346677788888777652 22111 1122 2222233333344556666666555542 222
Q ss_pred HHHHHHHHHH-------HcCChHHHHHH-------HHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 347 SYNTLIFAYC-------KEGKMQESKSL-------LYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 347 ~~~~li~~~~-------~~g~~~~A~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 407 (609)
+-+.-..-.. ...+.+.|..- +++.... ..+-...|..+++.+.+.|+.-.-...++++.
T Consensus 266 ~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 266 TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 2111111111 11223333322 2222222 12234456667777777777655555555443
No 412
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=52.06 E-value=3.1e+02 Score=28.96 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=17.9
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCE 151 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 151 (609)
+.-|. .+..+.-.|.++.|.+++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 44554 78888889999999998843
No 413
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.73 E-value=2.1e+02 Score=26.88 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCh
Q 037911 417 IYDYLIVALCQDNRP 431 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~ 431 (609)
+|..++.+++..|+.
T Consensus 323 ~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQS 337 (412)
T ss_pred hhhHHHHHHhcCChH
Confidence 466677777777763
No 414
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.70 E-value=60 Score=20.61 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=12.8
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 037911 218 LNCIDQCWQVYEEMGRIGICPNTHTFNI 245 (609)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 245 (609)
.|-..++..++++|.+.|+..+...+..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 3444444444444444444444444433
No 415
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=51.56 E-value=3.3e+02 Score=29.11 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q 037911 130 CLIVHILAWNNKFSFAMKMLCELV 153 (609)
Q Consensus 130 ~~l~~~~~~~~~~~~A~~~~~~~~ 153 (609)
-.+|--|.+.|.+++|.++..+..
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~ 138 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENR 138 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Confidence 345566778889998888874443
No 416
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=51.31 E-value=1.6e+02 Score=25.48 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=85.8
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 037911 199 VGFQPSIVSCNFLLNGLLKL----NCIDQCWQVYEEMGRIGICPNTH----TFNILTHVFCKNGDVDKVNGFLEKIEEEG 270 (609)
Q Consensus 199 ~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 270 (609)
.|..++...++.++..+.+. ++++.+..+=.+....++..+.. ....=+..|-+.||+.+.-.+|-.....
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g- 80 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG- 80 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh-
Confidence 35667777888777766543 33444444444444444444322 1222233444556655555554443321
Q ss_pred CCCCHHhHHHHHHHHHhcCCHhH-----HHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037911 271 FDPDLVTYNTLISSYCKKGRLND-----AFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDI 345 (609)
Q Consensus 271 ~~~~~~~~~~li~~~~~~g~~~~-----a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 345 (609)
+-+.++++. |..+.++.++ + ...-|......-++.-.-+++-+.+- -
T Consensus 81 --------------ce~~~dlq~~~~~va~~Ltkd~Kd---k-~~vPFceFAetV~k~~q~~e~dK~~L----------G 132 (233)
T PF14669_consen 81 --------------CEKFADLQRFCACVAEALTKDSKD---K-PGVPFCEFAETVCKDPQNDEVDKTLL----------G 132 (233)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHhcccc---c-CCCCHHHHHHHHhcCCccchhhhhhh----------h
Confidence 111111111 2233333332 1 12335555555555544444332221 1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc--------------cCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 346 VSYNTLIFAYCKEGKMQESKSLLYEMMGNGIY--------------PDTFTCQIIVQGYGKEGRLLSALNLVV 404 (609)
Q Consensus 346 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 404 (609)
.+=.+++..|.+.-++.+..++++.|.+..+. +--...|.....+.+.|..+.|+.+++
T Consensus 133 RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 133 RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 12235667778888888888888888764221 112234444555566666666666555
No 417
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.91 E-value=69 Score=27.94 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 517 LPDSQICRVLINGYCMEKDVNKAEALLGFFAK 548 (609)
Q Consensus 517 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (609)
.|++.+|..++..+...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555444443
No 418
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=49.98 E-value=1.7e+02 Score=27.70 Aligned_cols=114 Identities=17% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC
Q 037911 246 LTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK 325 (609)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 325 (609)
++....+.++..+..+.++.+. ....-...+..+...|++..|++++.+..+ -...+..+-..-.-..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred HHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 037911 326 VREAHQLFHRMVHR-----GLSPDIVSYNTLIFAYCKEGKMQESKSLLYE 370 (609)
Q Consensus 326 ~~~a~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (609)
+++.....+++.+. -..-|...|..++.+|.-.|+...+.+-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 419
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.33 E-value=1.2e+02 Score=23.44 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=16.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 383 CQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 383 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666655
No 420
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=49.33 E-value=1.4e+02 Score=23.96 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHH
Q 037911 539 AEALLGFFAKKFQIYD-TESYNAVFNMFAEDGDLSKLMELQK 579 (609)
Q Consensus 539 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 579 (609)
+.++|..|...++... ...|......+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566776766665333 3456666666777777777777765
No 421
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.06 E-value=11 Score=35.45 Aligned_cols=89 Identities=11% Similarity=0.148 Sum_probs=50.1
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037911 139 NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL 218 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 218 (609)
.|.+++|++.+...++. .|+...+|..-.. .+.+.++...|++-+....+.+ +.+...|-.--.+-.-.
T Consensus 127 ~G~~~~ai~~~t~ai~l---np~~a~l~~kr~s-------v~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL---NPPLAILYAKRAS-------VFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLL 195 (377)
T ss_pred Ccchhhhhccccccccc---CCchhhhcccccc-------eeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHh
Confidence 45677777777776654 3445555544444 6667777777777776666543 11222333333333345
Q ss_pred CChHHHHHHHHHHhhCCCCC
Q 037911 219 NCIDQCWQVYEEMGRIGICP 238 (609)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~~ 238 (609)
|++++|...+....+.++.+
T Consensus 196 g~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 196 GNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred hchHHHHHHHHHHHhccccH
Confidence 66666666666666655433
No 422
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=49.05 E-value=2e+02 Score=27.67 Aligned_cols=46 Identities=9% Similarity=0.148 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 037911 558 YNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKG 603 (609)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 603 (609)
|-.+++.....|.+++++.+|++++..|-.|=...-.++++.+-..
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~k 188 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKMK 188 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 4445555566666666777777777666666666555555555433
No 423
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.04 E-value=4e+02 Score=29.32 Aligned_cols=130 Identities=14% Similarity=0.169 Sum_probs=80.5
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
....|+.+.|++.-.++ .+...|..|.....+.|+.+-|...|++.+. |..|--.|.-.|+.++.
T Consensus 653 aLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 34778999998876654 3556899999999999999999999988764 22333345567888888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
.++.+....++ |..+.. ... .-.|+.++=.++++..-. .| ..|. .....|.-++|.++.++....
T Consensus 718 ~Km~~iae~r~---D~~~~~-qna--lYl~dv~ervkIl~n~g~---~~--layl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 718 SKMMKIAEIRN---DATGQF-QNA--LYLGDVKERVKILENGGQ---LP--LAYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHHhhh---hhHHHH-HHH--HHhccHHHHHHHHHhcCc---cc--HHHH----HHhhcCcHHHHHHHHHhhccc
Confidence 87777665432 222111 111 124666666666554322 21 1221 123456777788888777664
No 424
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=48.82 E-value=4.2e+02 Score=29.47 Aligned_cols=49 Identities=6% Similarity=-0.050 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhcC
Q 037911 521 QICRVLINGYCMEKDVNKAEALLGFFAKKFQ-IYDTESYNAVFNMFAEDG 569 (609)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 569 (609)
.++..-.+.+...|.+-.|.+++.++.+... .++...|..++..+...|
T Consensus 1232 K~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1232 KVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred hheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 3333333444445555555555555444221 333344444444444444
No 425
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.07 E-value=38 Score=31.56 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhhCCcc
Q 037911 278 YNTLISSYCKKGRLNDAFYLYRIMYRRNVL 307 (609)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 307 (609)
|+..|....+.||+++|+.++++.++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 455666666666666666666666665554
No 426
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.98 E-value=1.3e+02 Score=23.32 Aligned_cols=26 Identities=27% Similarity=0.151 Sum_probs=12.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 523 CRVLINGYCMEKDVNKAEALLGFFAK 548 (609)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (609)
|..|+..|...|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444444444555555555444443
No 427
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=47.60 E-value=1.2e+02 Score=29.94 Aligned_cols=60 Identities=13% Similarity=0.022 Sum_probs=36.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc--CC-----CCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 523 CRVLINGYCMEKDVNKAEALLGFFAKK--FQ-----IYDTESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
...|++..+-.||+..|.++++.+.-. +. .-.+.++..++-+|...+++.+|++.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777776643211 10 1123556666777777777777777776654
No 428
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=47.47 E-value=2.2e+02 Score=25.82 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=44.0
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHh
Q 037911 139 NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCN-FLLNGLLK 217 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~ 217 (609)
..+|+.|+..|.+.+.. .|.....|..-+. .|.+..+++.+..--++.++. .||.+--. .+...+..
T Consensus 23 ~k~y~~ai~~y~raI~~---nP~~~~Y~tnral-------chlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI---NPTVASYYTNRAL-------CHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred hhhhchHHHHHHHHHhc---CCCcchhhhhHHH-------HHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHh
Confidence 34556666666555543 3344444444444 566666777666666666653 34443322 33344455
Q ss_pred cCChHHHHHHHHHH
Q 037911 218 LNCIDQCWQVYEEM 231 (609)
Q Consensus 218 ~~~~~~a~~~~~~m 231 (609)
...+++|+..+.+.
T Consensus 91 s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRA 104 (284)
T ss_pred hccccHHHHHHHHH
Confidence 56666666666655
No 429
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.45 E-value=45 Score=33.19 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=23.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhcCCCHhHHHHHHHHHHH
Q 037911 460 LCKCDSVADALLLKDEMVDRNIKPSLSTYR-ALICCFCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~ 513 (609)
+.+.+.++.|..++.+.++.. ||...|- .-..++.+.+++..|+.=...+++
T Consensus 14 ~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 344455555555555555532 4333322 222444555555555554444443
No 430
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.29 E-value=2.2e+02 Score=25.74 Aligned_cols=21 Identities=0% Similarity=0.025 Sum_probs=13.7
Q ss_pred HHHcCChHHHHHHHHHHHHCC
Q 037911 355 YCKEGKMQESKSLLYEMMGNG 375 (609)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~ 375 (609)
-...+++.+|+++|+++....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777766553
No 431
>PRK09857 putative transposase; Provisional
Probab=47.26 E-value=1.9e+02 Score=27.34 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=38.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037911 523 CRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNN 590 (609)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 590 (609)
+..++......|+.++-.++++.+.+. ..........++.-+.+.|..++++++.++|+..|+.++.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 334444445556655556665555543 1222233445556666666667778888888888877663
No 432
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.08 E-value=2.4e+02 Score=26.21 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=14.2
Q ss_pred HHHHHHHHccCCHHHHHHHHH
Q 037911 384 QIIVQGYGKEGRLLSALNLVV 404 (609)
Q Consensus 384 ~~l~~~~~~~~~~~~A~~~~~ 404 (609)
..++..+.+.|.+.+|+.+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHH
Confidence 345667777788887776544
No 433
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.92 E-value=1.7e+02 Score=24.12 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=24.3
Q ss_pred CHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037911 309 DLVTYTTLMNGLCKEGK-VREAHQLFHRMVHRGLSPDIVSYNTLIFAYC 356 (609)
Q Consensus 309 ~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 356 (609)
+...|..++++..+..- ---+..+|.-|++.+..++..-|..+|.++.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 33445555555544333 2234455555555555555555555555543
No 434
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.90 E-value=2.3e+02 Score=25.72 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=26.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHH
Q 037911 316 LMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYC-KEGKMQESKSLLYEM 371 (609)
Q Consensus 316 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~ 371 (609)
+++.+-..|+++++...++++...+...+..--+.|-.+|- ..|....+++++..+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 44455556666666666666666554445544554444442 223334444444433
No 435
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.86 E-value=40 Score=31.44 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 037911 558 YNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLT 592 (609)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 592 (609)
|+..|..-.+.||+++|++++++..+.|+.--..|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 34555555555555555555555555554443333
No 436
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.24 E-value=2.4e+02 Score=25.65 Aligned_cols=55 Identities=5% Similarity=0.142 Sum_probs=39.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhh
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK-LNCIDQCWQVYEEMGR 233 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~ 233 (609)
..-+.|+++++++.+.++.+.+...+..-.|.|-.+|-. -|....+++++..+..
T Consensus 10 laeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 10 LAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 567889999999999999998888888888888777743 3555666776666543
No 437
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.21 E-value=1.6e+02 Score=25.39 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=12.3
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 037911 389 GYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 389 ~~~~~~~~~~A~~~~~~~~~ 408 (609)
.|.+.|.+++|.++++....
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45566666666666666555
No 438
>PRK11619 lytic murein transglycosylase; Provisional
Probab=44.87 E-value=4.3e+02 Score=28.47 Aligned_cols=359 Identities=10% Similarity=-0.007 Sum_probs=174.7
Q ss_pred HHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037911 152 LVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEM 231 (609)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 231 (609)
+++..++.|.....-...+. .+.+.+++.+.+..+.. .+.+...--....+....|+.++|....+.+
T Consensus 88 Fl~~~~~~P~~~~Lr~~~l~-------~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l 155 (644)
T PRK11619 88 FIRANPTLPPARSLQSRFVN-------ELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKEL 155 (644)
T ss_pred HHHHCCCCchHHHHHHHHHH-------HHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444556655555555555 56677777776663311 1345544455667777888888787777776
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCChHH--HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC-----
Q 037911 232 GRIGICPNTHTFNILTHVFCKNGDVDK--VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR----- 304 (609)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----- 304 (609)
=..| ......++.++..+.+.|.+.. ..+-++.....| +...-..+...+. .+.....+.+..+...
T Consensus 156 W~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~ 229 (644)
T PRK11619 156 WLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVE 229 (644)
T ss_pred hccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHH
Confidence 4444 3456677778888877666433 333344444433 3333333333221 1111111122222111
Q ss_pred ----CccCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037911 305 ----NVLPDLVTYTTLMNGLC--KEGKVREAHQLFHRMVHRG-LSPDI--VSYNTLIFAYCKEGKMQESKSLLYEMMGNG 375 (609)
Q Consensus 305 ----~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g-~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 375 (609)
.+.|+...-..++.++. ...+.+.|..++....... ..+.. .....+.......+...+|...++......
T Consensus 230 ~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~ 309 (644)
T PRK11619 230 TFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS 309 (644)
T ss_pred HHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc
Confidence 11122211111222222 3445677888887764432 22222 223333333333323566666666654332
Q ss_pred CccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 037911 376 IYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNE 455 (609)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 455 (609)
.+......-+..-.+.++++.+...+..|.... .-...-..-+.+++...|+.++|...|+.+... .+ .|..
T Consensus 310 --~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~ 381 (644)
T PRK11619 310 --QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPM 381 (644)
T ss_pred --CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHH
Confidence 244444555555567888888888887775432 223444555667767788888888888887331 11 2222
Q ss_pred HHHHHHhcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 037911 456 LMESLCKCDSVADA-LLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEK 534 (609)
Q Consensus 456 l~~~~~~~g~~~~A-~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 534 (609)
|... +.|..-.- ...... ....+ +.. .-..-+..+...|+..+|...+..+... .+......+.....+.|
T Consensus 382 LAa~--~Lg~~~~~~~~~~~~-~~~~~-~~~-~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g 453 (644)
T PRK11619 382 VAAQ--RLGEEYPLKIDKAPK-PDSAL-TQG-PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQ 453 (644)
T ss_pred HHHH--HcCCCCCCCCCCCCc-hhhhh-ccC-hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Confidence 2211 11111000 000000 00000 000 0111223445667777777777766652 24444555555556666
Q ss_pred CHHHHHHHHH
Q 037911 535 DVNKAEALLG 544 (609)
Q Consensus 535 ~~~~A~~~~~ 544 (609)
..+.++....
T Consensus 454 ~~~~ai~~~~ 463 (644)
T PRK11619 454 WWDLSVQATI 463 (644)
T ss_pred CHHHHHHHHh
Confidence 6666665543
No 439
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=44.83 E-value=2.2e+02 Score=25.20 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=27.4
Q ss_pred CCCCCCchhhHHHHHhhhccCCChhhhhhhhhcCcCCCCChHHHHHHHHhc
Q 037911 52 LPETQNPNKIVDLICSSLKKGDSHLTLLQNDLKPLLPHLGAHEISRVLLRC 102 (609)
Q Consensus 52 ~p~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 102 (609)
+|+......+.+.+|.+++..+.........+.......+...+...+...
T Consensus 67 Y~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~ 117 (214)
T TIGR03060 67 YRPEEHLDALFDALCNSNGFDPEQLREDAKQLLEQAKGKGLDEILSWLTQA 117 (214)
T ss_pred CCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcc
Confidence 344444556677777776665544443333344444455666666666544
No 440
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.73 E-value=3.2e+02 Score=26.96 Aligned_cols=55 Identities=11% Similarity=0.189 Sum_probs=33.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 179 AYVKVGLIRESFKTFRKTLDVG--FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
.|...|+++.|++.|.+.++.- ....+..|-.+|.+-.-.|+|........+..+
T Consensus 159 hy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 159 HYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 7777888888888887765531 112333455556666666777666666555544
No 441
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.70 E-value=1.3e+02 Score=27.61 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=45.8
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhC--CC-CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHH
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVK--DC-PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKT 196 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~ 196 (609)
.......|+.-|.+.|++++|.++|+.+..... ++ .....+...+.. ++.+.|+.++.+.+--++
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~-------Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLE-------CAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH-------HHHHhCCHHHHHHHHHHH
Confidence 344555789999999999999999999975532 22 234455555666 677888888877765544
No 442
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=44.39 E-value=1.7e+02 Score=28.04 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFC 251 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 251 (609)
-|-+++......|.++.++.+|++.+..|..|-...-..++..+-
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 455566666666666666666666666666665555555555543
No 443
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.35 E-value=3.4e+02 Score=27.07 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHH
Q 037911 381 FTCQIIVQGYGKEGRLLSALNLVVEL 406 (609)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~A~~~~~~~ 406 (609)
.+...|++.++-.||+..|+++++.+
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc
Confidence 33444555566666666666665543
No 444
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=43.93 E-value=2.5e+02 Score=25.40 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037911 453 YNELMESLCKCDSVADALLLKDEMVDRNI 481 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 481 (609)
+..++-.+...|+++.|+++.+.+++.|.
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCC
Confidence 44455566677888888888888887765
No 445
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.77 E-value=2e+02 Score=27.07 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=36.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037911 470 LLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYC 531 (609)
Q Consensus 470 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 531 (609)
.++|+.+.+.++.|...++..+.-.+.+.=.+.+.+.+|+.+.. |+.-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 45666666777777777766666666666677777777777753 2333555555555
No 446
>PRK10941 hypothetical protein; Provisional
Probab=43.74 E-value=2.7e+02 Score=25.89 Aligned_cols=60 Identities=15% Similarity=0.035 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 489 RALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
+.+-.+|.+.++++.|+++.+.+.... +.++.-+..-.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344455666777777777777776532 334444555556666777777777766666654
No 447
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.71 E-value=3e+02 Score=26.27 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=53.1
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHhh----CCccCCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCH----H
Q 037911 276 VTYNTLISSYCKKGRLNDAFYLYRIMYR----RNVLPDLVTYTTLMNGLC-KEGKVREAHQLFHRMVHRGLSPDI----V 346 (609)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~g~~p~~----~ 346 (609)
..+-.....||+-|+-+.|++.+++..+ .|.+.|+..+..-+..+. ...-+.+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455566778888888888887766554 455656555544333222 222234444444555555544332 3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 347 SYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 347 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
+|..+- +....++.+|-.+|-+...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 444332 2244677778777766553
No 448
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.58 E-value=5.5e+02 Score=29.38 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=10.7
Q ss_pred CChhHHHHHHHHhhh
Q 037911 104 SDSVSALTFFNWVKN 118 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~ 118 (609)
+.+.+|++.|..+..
T Consensus 934 ge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 934 GEPVKALNCFQSALS 948 (1480)
T ss_pred CchHHHHHHHHHHhh
Confidence 577778887777653
No 449
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=42.95 E-value=1.5e+02 Score=24.45 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=23.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 037911 195 KTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHT 242 (609)
Q Consensus 195 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 242 (609)
.+.+.|++++.. -..++..+.+.+..-.|.++|+++.+.+...+..|
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 334445444432 23445555555555666666666665543333333
No 450
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.40 E-value=97 Score=28.40 Aligned_cols=58 Identities=19% Similarity=0.070 Sum_probs=32.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 524 RVLINGYCMEKDVNKAEALLGFFAKK----FQ-IYDTESYNAVFNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 581 (609)
..+..-|.+.|++++|.++|+.+... |. .+...+...+..++.+.|+.++.+.+.-+|
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556666677777777776655422 11 222344455556666667766666655444
No 451
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.65 E-value=3.2e+02 Score=26.07 Aligned_cols=81 Identities=16% Similarity=0.048 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHhhCCc----cCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 037911 291 LNDAFYLYRIMYRRNV----LPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKS 366 (609)
Q Consensus 291 ~~~a~~~~~~~~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 366 (609)
.+.|.+.|++....+. ..+......++....+.|+.+.-..+++.... ..+...-..++.+.+-..+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4455555555554211 22333344444555555554444444444433 2244445555556555556555556
Q ss_pred HHHHHHHC
Q 037911 367 LLYEMMGN 374 (609)
Q Consensus 367 ~~~~~~~~ 374 (609)
+++.....
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 66655553
No 452
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=41.52 E-value=1.6e+02 Score=22.47 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC
Q 037911 459 SLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (609)
.+...|++++|..+.+.+ ..||...|-.|-. .+.|..+++..-+.++-..|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 345556666666555443 2366665554432 24555555555555554444
No 453
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.15 E-value=3e+02 Score=25.66 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCccCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--
Q 037911 344 DIVSYNTLIFAYCKEGKMQESKSLLYEMMGN----GIYPDTFTCQI-IVQGYGKEGRLLSALNLVVELQRFGVSISRD-- 416 (609)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 416 (609)
....+..+...|++.++.+.+.++.++..+. |.+.|.....+ |.-.|....-.++.++..+.|.+.|..-+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 3455666777777777777777666654432 44444432222 2222333344566677777777766543322
Q ss_pred --HHHHHHHHHHhcCChHHHHHHHHHH
Q 037911 417 --IYDYLIVALCQDNRPFAATSLLERI 441 (609)
Q Consensus 417 --~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
+|.-+. +....++.+|..++-+.
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDI 218 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHH
Confidence 121111 11223456666666555
No 454
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.04 E-value=1.5e+02 Score=21.93 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHHH
Q 037911 324 GKVREAHQLFHRMV 337 (609)
Q Consensus 324 ~~~~~a~~~~~~m~ 337 (609)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 455
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.47 E-value=33 Score=27.49 Aligned_cols=21 Identities=38% Similarity=0.748 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 037911 324 GKVREAHQLFHRMVHRGLSPD 344 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~g~~p~ 344 (609)
|.-.+|..+|..|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 334445555555555555554
No 456
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=40.45 E-value=5.6e+02 Score=28.57 Aligned_cols=51 Identities=14% Similarity=0.034 Sum_probs=26.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcC
Q 037911 309 DLVTYTTLMNGLCKEGKVREAHQLFHRMVH-RGLSPDIVSYNTLIFAYCKEG 359 (609)
Q Consensus 309 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g 359 (609)
|..++..-...+...|++..+.+++.++.+ .|-.++...|..++..+...|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 444444445555556666666666666554 234445555555554444444
No 457
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.29 E-value=1.3e+02 Score=24.77 Aligned_cols=39 Identities=15% Similarity=0.029 Sum_probs=18.2
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 037911 512 LESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ 551 (609)
Q Consensus 512 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 551 (609)
.+.|++++..= ..++..+.+.++.-.|.++++.+.+.+.
T Consensus 13 k~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 13 KEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 33355444332 2334444444444555556655555443
No 458
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.13 E-value=3.5e+02 Score=27.59 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHH--HHHHHHHhC-CChh----HHHHHHHHHHHhhCCCCCcHHhH
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYC--LIVHILAWN-NKFS----FAMKMLCELVELVKDCPHSVDVF 166 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~--~l~~~~~~~-~~~~----~A~~~~~~~~~~~~~~~~~~~~~ 166 (609)
.+.+.+....+.+..|.+....-+.. +-+.+.+. .++.+|.++ |..- .-.+++.+|++..+..+.+..+-
T Consensus 24 eIcD~IN~~~~~~~eAvralkKRi~~---k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr 100 (470)
T KOG1087|consen 24 EICDLINSTEGGPKEAVRALKKRLNS---KNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVR 100 (470)
T ss_pred HHHHHHhcCccCcHHHHHHHHHHhcc---CCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHH
Confidence 45555555556666665555444321 11122222 234555443 2211 23566677766644443344433
Q ss_pred H
Q 037911 167 Q 167 (609)
Q Consensus 167 ~ 167 (609)
.
T Consensus 101 ~ 101 (470)
T KOG1087|consen 101 E 101 (470)
T ss_pred H
Confidence 3
No 459
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.39 E-value=1.4e+02 Score=31.35 Aligned_cols=75 Identities=12% Similarity=0.036 Sum_probs=47.2
Q ss_pred HHHHHHhcCCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHH------HHHHHHHHHHHcCCCCChhcHHHH
Q 037911 490 ALICCFCGIGRSGEAVSLMDEMLESG--MLPDSQICRVLINGYCMEKDVN------KAEALLGFFAKKFQIYDTESYNAV 561 (609)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 561 (609)
.|+.+|...|++..+.++++.....+ -+.=...+|..+....+.|.++ .|.+.++... ..-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67788888888888888888887542 2222445777777778877654 2334444333 24466667666
Q ss_pred HHHHHh
Q 037911 562 FNMFAE 567 (609)
Q Consensus 562 ~~~~~~ 567 (609)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 655443
No 460
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.24 E-value=1.8e+02 Score=22.46 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=9.3
Q ss_pred HHHHHhcCCHhHHHHHHHHH
Q 037911 282 ISSYCKKGRLNDAFYLYRIM 301 (609)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~~ 301 (609)
+.-|...|+.++|..-++++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444445555555555443
No 461
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=39.20 E-value=2.8e+02 Score=24.71 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=27.1
Q ss_pred CCCCCCCchhhHHHHHhhhccCCChhhhhhhhhcCcCCCCChHHHHHHHHh
Q 037911 51 FLPETQNPNKIVDLICSSLKKGDSHLTLLQNDLKPLLPHLGAHEISRVLLR 101 (609)
Q Consensus 51 ~~p~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 101 (609)
.+|+......+.+.+|..++..+.....-...+.......+...+...+..
T Consensus 61 GY~p~~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~ 111 (216)
T PF11264_consen 61 GYPPEEDKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGKSIEDLLSWLSQ 111 (216)
T ss_pred CCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 344445555666677776665554444333444444445555555555544
No 462
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.10 E-value=3.3e+02 Score=25.21 Aligned_cols=102 Identities=14% Similarity=0.012 Sum_probs=42.8
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHhhCCCCCCHHHHHHHHHHHHHcCChH
Q 037911 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQV----YEEMGRIGICPNTHTFNILTHVFCKNGDVD 257 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (609)
+.+++++|++++..- ...+.+.|+..-|-++ .+-..+.+.+.|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~G---------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG---------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHH---------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 456677777766532 2234444554433333 222233445555555555555544433211
Q ss_pred -HHHHHHHHHHH---cC--CCCCHHhHHHHHHHHHhcCCHhHHHHHH
Q 037911 258 -KVNGFLEKIEE---EG--FDPDLVTYNTLISSYCKKGRLNDAFYLY 298 (609)
Q Consensus 258 -~a~~~~~~~~~---~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 298 (609)
+-.++.+.+.+ .| ..-++.....+...|.+.|++.+|...|
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 12222222221 11 1124555666666777777776666544
No 463
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.88 E-value=4.9e+02 Score=27.11 Aligned_cols=121 Identities=12% Similarity=0.131 Sum_probs=59.0
Q ss_pred CChhHHHHHHHHHHHhhCCC---------CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHH-------HhCCCCC
Q 037911 140 NKFSFAMKMLCELVELVKDC---------PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKT-------LDVGFQP 203 (609)
Q Consensus 140 ~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~-------~~~~~~~ 203 (609)
+.|++|...|.-++..+... |...+....+.. .+...|+.+.|-.+.++. ..-.+.|
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~-------~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~ 324 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVAD-------IFRFQGDREMAADLIERGLYVFDRALHPNFIP 324 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHH-------HHHHhcchhhHHHHHHHHHHHHHHHhcccccc
Confidence 34556666666665543221 334444444444 566777766665555543 3222111
Q ss_pred -------------CHHHHHHH---HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHH
Q 037911 204 -------------SIVSCNFL---LNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFC-KNGDVDKVNGFLEKI 266 (609)
Q Consensus 204 -------------~~~~~~~l---l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 266 (609)
|...|-+| |..+.+.|-+..|++..+-+.+....-|......+|..|+ +..++.-.+++++..
T Consensus 325 ~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 325 FSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred ccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22222222 2334455666666666666655432224444445555543 345555555555554
Q ss_pred H
Q 037911 267 E 267 (609)
Q Consensus 267 ~ 267 (609)
.
T Consensus 405 e 405 (665)
T KOG2422|consen 405 E 405 (665)
T ss_pred H
Confidence 3
No 464
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.12 E-value=4.8e+02 Score=27.10 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=46.4
Q ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCC-C------------CCHHHHHHHHHHHHc
Q 037911 467 ADALLLKDEM-VDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGM-L------------PDSQICRVLINGYCM 532 (609)
Q Consensus 467 ~~A~~~~~~~-~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~------------p~~~~~~~l~~~~~~ 532 (609)
++..+.+... .+.|+..+......++.. ..|+...|..+++++...|- . ++......++.++.
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~- 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA- 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 3334444443 355776777776666554 36889999999988765431 1 11222233333332
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 037911 533 EKDVNKAEALLGFFAKKFQI 552 (609)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~ 552 (609)
.|+.+.+..+++.+...|..
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~ 277 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVD 277 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCC
Confidence 35666666666666665543
No 465
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.20 E-value=25 Score=28.17 Aligned_cols=34 Identities=12% Similarity=0.310 Sum_probs=26.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037911 564 MFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHS 599 (609)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 599 (609)
.+...|.-.+|-++|++|++.|-+||. |+.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 455667778899999999999999986 6666654
No 466
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=35.59 E-value=6.4e+02 Score=27.78 Aligned_cols=85 Identities=12% Similarity=0.062 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC-------------CCCHHHHH
Q 037911 143 SFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF-------------QPSIVSCN 209 (609)
Q Consensus 143 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~~ 209 (609)
++..+.++.+.+. .+...+......+. ....|++.+|+.++++....+- ..+.....
T Consensus 181 eeIv~~L~~Il~~-EgI~id~eAL~lIA---------~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~ 250 (830)
T PRK07003 181 GHIVSHLERILGE-ERIAFEPQALRLLA---------RAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMV 250 (830)
T ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHH---------HHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHH
Confidence 3445555555544 33444555555553 3567888999988877664321 12222333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIGICP 238 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 238 (609)
.++..+. .++..+++.+++++...|+..
T Consensus 251 ~ll~aL~-~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 251 RLLDALA-AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHhCCCH
Confidence 3444333 366777777777776666543
No 467
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=35.49 E-value=61 Score=23.11 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037911 569 GDLSKLMELQKRFLRLGFAPNNLTCKYMIHS 599 (609)
Q Consensus 569 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 599 (609)
|+.+.+.+++++..+.|+.|.......+..+
T Consensus 15 ~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~ 45 (79)
T PF02607_consen 15 GDEEEAEALLEEALAQGYPPEDIIEEILMPA 45 (79)
T ss_dssp T-CCHHHHHHHHHHHCSSSTTHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4444555555555544444444444444433
No 468
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=35.47 E-value=4e+02 Score=25.39 Aligned_cols=56 Identities=23% Similarity=0.377 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 490 ALICCFCGIGRSGEAVSLMDEMLESGMLPDSQ---ICRVLINGYCMEKDVNKAEALLGFFA 547 (609)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (609)
.+..+-.+.|+..+|.+.++++.+. .|-.. +...|+.++....-+.+...++-+.-
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445678888888887777653 12221 23456777776666666666665544
No 469
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=35.47 E-value=3.4e+02 Score=24.64 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHH
Q 037911 219 NCIDQCWQVYEEMGRIGICPNT-HTFNILTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 264 (609)
.+++.|+..|.+.+. +.|+. .-|+.-+.++.+..+++.+.+--.
T Consensus 24 k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcr 68 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCR 68 (284)
T ss_pred hhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHH
Confidence 334444444444333 22333 222333333444444444443333
No 470
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.36 E-value=3.8e+02 Score=25.05 Aligned_cols=95 Identities=18% Similarity=0.092 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCChHHHHHHH----HHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 037911 419 DYLIVALCQDNRPFAATSLL----ERIGQDGYVPSLEIYNEL-MESLCKCDSVADALLLKDEMVDR----NIKPSLSTYR 489 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~ 489 (609)
..++..+.+.|.+.+|..++ +++.+..-+++..+...+ -..|....++.++..-+...... -++|....--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 45677889999999998754 444554445554333222 23444445555544444333211 1223333323
Q ss_pred HHHHH--HhcCCCHhHHHHHHHHHHH
Q 037911 490 ALICC--FCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 490 ~li~~--~~~~g~~~~A~~~~~~~~~ 513 (609)
-++.+ .|...++..|..+|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 33333 3556778888888877776
No 471
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.32 E-value=3e+02 Score=23.97 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHhHHHHHH-HHHhcCC--HhHHHH
Q 037911 222 DQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE--GFDPDLVTYNTLIS-SYCKKGR--LNDAFY 296 (609)
Q Consensus 222 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~-~~~~~g~--~~~a~~ 296 (609)
++++++-.++.. +...+-.....|++++|..-++++.+. .++.-...|..+.. +++..+. +-+|.-
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Q ss_pred HHHHHhhCCccCCH---hhHHHHHHHHH--------------hcCCHHHHHHHHHHHHH
Q 037911 297 LYRIMYRRNVLPDL---VTYTTLMNGLC--------------KEGKVREAHQLFHRMVH 338 (609)
Q Consensus 297 ~~~~~~~~~~~p~~---~~~~~ll~~~~--------------~~~~~~~a~~~~~~m~~ 338 (609)
++.-+.....+-.. +.+..-+.+.+ +.|+++.|.+.++-|.+
T Consensus 91 l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 472
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=35.32 E-value=7.1e+02 Score=28.23 Aligned_cols=100 Identities=5% Similarity=-0.115 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC---CHHHHHHHHHHHHhCCCCCC
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG---LIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~ 204 (609)
+..++=+++...+.|+.|...|+.+....++ -.+-|....++......--...| .+++|+.-|+.+-.. +.-
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 551 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRESFPG---RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGA 551 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhcCCC---cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCC
Confidence 3445566777788888888888888766433 23333333321000000011112 355566666655431 112
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
+--|---.-+|-+.|++++-.+.+.-..
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (932)
T PRK13184 552 PLEYLGKALVYQRLGEYNEEIKSLLLAL 579 (932)
T ss_pred chHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 2233333344556666666555555443
No 473
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=34.62 E-value=69 Score=20.15 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=29.2
Q ss_pred HHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 037911 113 FNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVE 154 (609)
Q Consensus 113 f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 154 (609)
.+|+..+..++-....+..+.+-+...+.+..++..++++..
T Consensus 2 A~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw~ 43 (46)
T PF06855_consen 2 ANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAWS 43 (46)
T ss_dssp HHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHHH
T ss_pred hhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 456666777777888888777777777777777777777654
No 474
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.53 E-value=1.3e+02 Score=20.74 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=12.8
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 037911 276 VTYNTLISSYCKKGRLNDAFYLYRIMYRRN 305 (609)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 305 (609)
..++.++...++..-+++++..+.+..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444443
No 475
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=34.29 E-value=2.4e+02 Score=22.40 Aligned_cols=83 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhcCCCCC---CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchh----
Q 037911 106 SVSALTFFNWVKNDLEIKP---TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW---- 178 (609)
Q Consensus 106 ~~~A~~~f~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 178 (609)
...|+++-+.+....-+.| |..++..|..+++..|+|++++.--+..+.- |+.-.....+-+.
T Consensus 32 ~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y----------FNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 32 CRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY----------FNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----------HHHH--TTSTHHHHHHH
T ss_pred HHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH----------HhhccccccccchhHHH
Q ss_pred -------HHHHhCCHHHHHHHHHHHHh
Q 037911 179 -------AYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 179 -------~~~~~g~~~~A~~~~~~~~~ 198 (609)
++...|+.++|+..|+..-+
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
No 476
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.48 E-value=5.5e+02 Score=26.39 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=23.0
Q ss_pred HHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 037911 110 LTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVE 154 (609)
Q Consensus 110 ~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 154 (609)
...++...+..+..-+......++.. ..|+...|...++.+..
T Consensus 182 ~~~L~~i~~~egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 182 IKRLQEVAEAEGIEIDREALSFIAKR--ASGGLRDALTMLEQVWK 224 (472)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Confidence 33444433344555555555555442 24677777777766553
No 477
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.28 E-value=3.1e+02 Score=28.96 Aligned_cols=91 Identities=10% Similarity=0.069 Sum_probs=58.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCChH------HHHHHHHHHHHcCCCCCHHhHHHH
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIG--ICPNTHTFNILTHVFCKNGDVD------KVNGFLEKIEEEGFDPDLVTYNTL 281 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 281 (609)
+|+.+|...|++..+.++++.+.... -..=...+|.-|+...+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999887542 2223456777788888888754 4444555444 33477788777
Q ss_pred HHHHHhcCCHhHHHHHHHHHhh
Q 037911 282 ISSYCKKGRLNDAFYLYRIMYR 303 (609)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~~~~ 303 (609)
+.+...--.-.-.+-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7665543333333344444443
No 478
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.98 E-value=2.7e+02 Score=26.29 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037911 261 GFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYR 303 (609)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 303 (609)
++++.+.+.++.|.-.++.-+.-.+.+.=.+.+++.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555555566655555555555555556666666666554
No 479
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=32.96 E-value=2.1e+02 Score=25.10 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=24.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 524 RVLINGYCMEKDVNKAEALLGFFAKKFQIYDT-ESYNAVFNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 581 (609)
+.++..|...||++.|.++|..+.... ..|. ..|..=+..+.+.+......+.++.|
T Consensus 45 ~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 45 TDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 444444555555555555555444332 2222 22333334444444333333444433
No 480
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.77 E-value=6.1e+02 Score=29.41 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHH
Q 037911 239 NTHTFNILTHVFCKNGDVDKVNGF 262 (609)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~ 262 (609)
....|..+...+-+.|+.++|...
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~ 995 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQ 995 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHh
Confidence 344455555555555555555543
No 481
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=32.74 E-value=5.9e+02 Score=27.65 Aligned_cols=83 Identities=18% Similarity=0.082 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCC-C------------CCHHHHHHHHHHHH
Q 037911 466 VADALLLKDEMV-DRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGM-L------------PDSQICRVLINGYC 531 (609)
Q Consensus 466 ~~~A~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~------------p~~~~~~~l~~~~~ 531 (609)
.++...++.... ..|+..+......++... .|+...|+.+++++...|- . .+......|+.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 345555555544 457777777777777643 6999999999988765321 1 11222233344333
Q ss_pred ccCCHHHHHHHHHHHHHcCC
Q 037911 532 MEKDVNKAEALLGFFAKKFQ 551 (609)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~ 551 (609)
. ++...++.+++.+...|.
T Consensus 258 ~-~d~~~al~~l~~L~~~G~ 276 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAV 276 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCC
Confidence 3 666666666666666544
No 482
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=32.74 E-value=71 Score=19.28 Aligned_cols=29 Identities=31% Similarity=0.592 Sum_probs=21.9
Q ss_pred CcCCCCChHHHHHHHHhcCCChhHHHHHH
Q 037911 85 PLLPHLGAHEISRVLLRCQSDSVSALTFF 113 (609)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~f 113 (609)
...|+...+.+-.+|..+.||.-+|++.|
T Consensus 10 rvFP~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 10 RVFPHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHCCCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 34455566677888889999999998765
No 483
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.34 E-value=6e+02 Score=26.46 Aligned_cols=17 Identities=12% Similarity=0.423 Sum_probs=10.2
Q ss_pred HhCCHHHHHHHHHHHHh
Q 037911 182 KVGLIRESFKTFRKTLD 198 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~ 198 (609)
..|+...|+..++++..
T Consensus 210 s~GslR~al~lLdq~ia 226 (509)
T PRK14958 210 ANGSVRDALSLLDQSIA 226 (509)
T ss_pred cCCcHHHHHHHHHHHHh
Confidence 35666666666665543
No 484
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=32.10 E-value=4.7e+02 Score=25.17 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=23.3
Q ss_pred HHhCCHHHHHHHHHHHHhC---CCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHhh
Q 037911 181 VKVGLIRESFKTFRKTLDV---GFQPSIVSCN--FLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
.+.++.++|++.++++.+. --.|+...|- ...+.+...|+.+++.+++++..+
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444566666666655431 1123333332 222333444555555554444443
No 485
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.97 E-value=7e+02 Score=27.12 Aligned_cols=16 Identities=13% Similarity=0.474 Sum_probs=9.2
Q ss_pred hCCHHHHHHHHHHHHh
Q 037911 183 VGLIRESFKTFRKTLD 198 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~ 198 (609)
.|++..|+.+++++..
T Consensus 211 ~GslRdAlnLLDqaia 226 (709)
T PRK08691 211 AGSMRDALSLLDQAIA 226 (709)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4666666666655543
No 486
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=31.88 E-value=5.4e+02 Score=25.83 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=57.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 037911 523 CRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWK 602 (609)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 602 (609)
...|+.-|.-.|++.+|...++++---. -....++.+++.+..+.|+-...+.+++.+.+.| .+|.+.|-.+|-+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 3678888999999999999887664211 1233678999999999999888888888887554 5677777777765
Q ss_pred cc
Q 037911 603 GM 604 (609)
Q Consensus 603 ~~ 604 (609)
-.
T Consensus 587 V~ 588 (645)
T KOG0403|consen 587 VY 588 (645)
T ss_pred hh
Confidence 43
No 487
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.82 E-value=5.8e+02 Score=26.20 Aligned_cols=17 Identities=6% Similarity=0.173 Sum_probs=8.0
Q ss_pred HhHHHHHHHHHhhCCcc
Q 037911 291 LNDAFYLYRIMYRRNVL 307 (609)
Q Consensus 291 ~~~a~~~~~~~~~~~~~ 307 (609)
...|+.++.++.+.|..
T Consensus 264 ~~~al~~l~~l~~~G~d 280 (484)
T PRK14956 264 HSKSLEILESLYQEGQD 280 (484)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 34445555555544443
No 488
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.61 E-value=3.9e+02 Score=24.10 Aligned_cols=106 Identities=10% Similarity=0.162 Sum_probs=60.6
Q ss_pred HHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 453 YNELMESL--CKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGY 530 (609)
Q Consensus 453 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 530 (609)
|...+.++ ...+++++|.+.+-.- .+.|+.. ..++.++...|+.+.|..+++.+.- ...+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p--~l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP--PLSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC--CCCCHHHHHHHHHH-
Confidence 34444444 4456777777766221 2222222 2466777778899999988888742 12233333333444
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037911 531 CMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDG 569 (609)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 569 (609)
..+|.+.+|..+.+...+.. ....+..++..+....
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHh
Confidence 66788888888776655321 1346677776666443
No 489
>PRK09857 putative transposase; Provisional
Probab=31.55 E-value=4.5e+02 Score=24.85 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 037911 208 CNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD 274 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 274 (609)
+..++....+.++.++..++++.+.+. .+........+..-+.+.|.-+++.++..+|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555666666666776666554 333344444566667777777778888888888877654
No 490
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=31.50 E-value=92 Score=16.82 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=17.5
Q ss_pred CChhHHHHHHHHHHHhhCCCCCcHHhHHHHh
Q 037911 140 NKFSFAMKMLCELVELVKDCPHSVDVFQDLI 170 (609)
Q Consensus 140 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (609)
|+.+.|..+|+.+++. .|.+..++...+
T Consensus 1 ~~~~~~r~i~e~~l~~---~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEK---FPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHH---CCCChHHHHHHH
Confidence 4566777788877765 345556555544
No 491
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=31.48 E-value=4.2e+02 Score=24.48 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
..+.++..+.+.+....|+.+.+.+..
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 345677777777777778777777654
No 492
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=31.23 E-value=4.1e+02 Score=24.29 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHh
Q 037911 257 DKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMY 302 (609)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 302 (609)
++|...++.-... ..+..+...+..++...|+...+.++++.+.
T Consensus 116 ~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 116 NKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp HHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 3444444443222 2344444444455555666666666666554
No 493
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=30.99 E-value=71 Score=19.46 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=24.8
Q ss_pred hhcCcCCCCChHHHHHHHHhcCCChhHHHHHH
Q 037911 82 DLKPLLPHLGAHEISRVLLRCQSDSVSALTFF 113 (609)
Q Consensus 82 ~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f 113 (609)
.|+...|+++...+..+|....++.+.|...+
T Consensus 7 ~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~L 38 (42)
T PF02845_consen 7 QLQEMFPDLDREVIEAVLQANNGDVEAAIDAL 38 (42)
T ss_dssp HHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45667788888899999988888988887654
No 494
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=30.71 E-value=1.2e+02 Score=17.88 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLC 150 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~ 150 (609)
.+..++-.+-..|++++|+.+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45567778889999999999955
No 495
>PRK12798 chemotaxis protein; Reviewed
Probab=30.58 E-value=5.6e+02 Score=25.56 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=27.5
Q ss_pred cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHH-HccCCHHHHHHHHHHHH
Q 037911 358 EGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGY-GKEGRLLSALNLVVELQ 407 (609)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~ 407 (609)
.|+.+++.+.+..+.....++....+-.|+.+- ....+..+|+++|+...
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 466666666666655544445555555555443 33445666666665544
No 496
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.50 E-value=1e+02 Score=24.01 Aligned_cols=32 Identities=16% Similarity=0.022 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 037911 571 LSKLMELQKRFLRLGFAPNNLTCKYMIHSLWK 602 (609)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 602 (609)
.-.|.++++.+.+.+..++..|..-.|+.|.+
T Consensus 16 ~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~ 47 (116)
T cd07153 16 HLTAEEIYERLRKKGPSISLATVYRTLELLEE 47 (116)
T ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 33444444444444444444444444444433
No 497
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.92 E-value=1.8e+02 Score=19.74 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=5.9
Q ss_pred cCChHHHHHHHHHHH
Q 037911 253 NGDVDKVNGFLEKIE 267 (609)
Q Consensus 253 ~g~~~~a~~~~~~~~ 267 (609)
.|++=+|.++++.+-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 344444444444443
No 498
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.59 E-value=1.2e+02 Score=20.87 Aligned_cols=45 Identities=13% Similarity=0.011 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVF 250 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 250 (609)
...++.++...++..-.++++..+.+..+.|. .+..+|.--++.+
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 33445555555554445555555555544442 3334443333333
No 499
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.32 E-value=78 Score=24.97 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccc
Q 037911 560 AVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGM 604 (609)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 604 (609)
.++..+...+..-.|.++++.+.+.|...+..|..-.|+.|.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
No 500
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.10 E-value=2.5e+02 Score=23.87 Aligned_cols=68 Identities=9% Similarity=-0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccc
Q 037911 537 NKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGM 604 (609)
Q Consensus 537 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 604 (609)
+.-.+-+..+.+.........=..++..+...++.-.|.++++++.+.+..++..|..-.|+.|.+.|
T Consensus 7 ~~~~~~~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 7 QELLAQAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Done!