Query 037911
Match_columns 609
No_of_seqs 771 out of 3261
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 09:08:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-38 6.1E-43 335.2 46.9 453 124-600 82-593 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-37 7.9E-42 326.7 43.0 441 101-565 95-594 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.1E-30 3.7E-35 263.5 25.0 206 188-393 8-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-27 9.4E-32 235.2 49.1 382 133-569 6-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.1E-30 7.1E-35 261.5 25.2 207 222-428 7-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3.7E-27 1.3E-31 234.3 48.4 375 179-600 8-383 (388)
7 2gw1_A Mitochondrial precursor 99.9 4E-24 1.4E-28 220.9 39.6 440 126-584 6-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.1E-23 1.1E-27 214.3 39.7 435 95-549 11-478 (514)
9 3fp2_A TPR repeat-containing p 99.9 8.7E-23 3E-27 212.2 40.1 433 126-584 25-491 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 6.4E-22 2.2E-26 200.7 42.2 300 124-443 24-357 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 6.3E-22 2.2E-26 200.8 41.1 315 190-513 12-357 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.6E-21 9E-26 201.0 38.9 427 94-550 29-492 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.1E-18 3.6E-23 171.1 40.3 329 125-495 2-350 (359)
14 2xm6_A Protein corresponding t 99.9 2.8E-17 9.6E-22 168.1 51.7 364 109-550 26-433 (490)
15 3ieg_A DNAJ homolog subfamily 99.9 2.5E-18 8.6E-23 168.3 40.8 322 240-595 3-344 (359)
16 2xm6_A Protein corresponding t 99.9 7.1E-17 2.4E-21 165.1 51.9 344 183-587 56-435 (490)
17 2ooe_A Cleavage stimulation fa 99.9 7.3E-17 2.5E-21 166.7 47.3 418 149-584 2-492 (530)
18 3hym_B Cell division cycle pro 99.8 5.3E-18 1.8E-22 164.0 33.5 287 123-425 19-314 (330)
19 2ooe_A Cleavage stimulation fa 99.8 2E-16 6.7E-21 163.5 46.1 410 123-549 10-492 (530)
20 3hym_B Cell division cycle pro 99.8 5.6E-18 1.9E-22 163.8 31.7 268 275-548 22-298 (330)
21 1fch_A Peroxisomal targeting s 99.8 4.2E-18 1.4E-22 167.5 25.4 257 103-373 38-313 (368)
22 1fch_A Peroxisomal targeting s 99.8 9.1E-18 3.1E-22 165.1 26.5 288 182-509 37-354 (368)
23 1xi4_A Clathrin heavy chain; a 99.8 6.2E-15 2.1E-19 157.7 48.7 337 179-569 1058-1415(1630)
24 1xi4_A Clathrin heavy chain; a 99.8 1.8E-14 6.2E-19 154.2 49.8 400 111-575 969-1375(1630)
25 4eqf_A PEX5-related protein; a 99.8 3.2E-17 1.1E-21 161.1 26.6 265 125-404 64-351 (365)
26 1b89_A Protein (clathrin heavy 99.8 1.2E-17 4.1E-22 160.3 22.2 226 96-372 9-234 (449)
27 1b89_A Protein (clathrin heavy 99.8 1.2E-17 4.1E-22 160.3 22.1 283 181-507 14-304 (449)
28 4eqf_A PEX5-related protein; a 99.8 1.8E-17 6E-22 162.9 21.3 265 312-580 67-352 (365)
29 3cv0_A Peroxisome targeting si 99.8 1.2E-16 4E-21 154.3 26.4 265 125-404 20-310 (327)
30 4g1t_A Interferon-induced prot 99.8 1.3E-15 4.3E-20 155.3 35.3 374 203-593 49-469 (472)
31 4g1t_A Interferon-induced prot 99.8 1.6E-15 5.6E-20 154.5 35.4 390 122-551 47-461 (472)
32 3spa_A Mtrpol, DNA-directed RN 99.7 3.1E-18 1.1E-22 177.3 10.5 118 204-321 126-247 (1134)
33 3cv0_A Peroxisome targeting si 99.7 8E-16 2.7E-20 148.4 26.8 151 428-581 151-312 (327)
34 3mkr_A Coatomer subunit epsilo 99.7 1.7E-15 5.7E-20 142.7 27.8 85 463-549 179-264 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 4.2E-18 1.4E-22 176.3 10.2 153 237-394 124-286 (1134)
36 3mkr_A Coatomer subunit epsilo 99.7 2.8E-15 9.6E-20 141.1 28.1 258 319-594 8-272 (291)
37 3e4b_A ALGK; tetratricopeptide 99.7 1.5E-14 5E-19 145.5 27.9 347 131-515 8-388 (452)
38 2pl2_A Hypothetical conserved 99.7 8E-15 2.8E-19 131.8 21.1 199 123-336 2-211 (217)
39 3e4b_A ALGK; tetratricopeptide 99.7 1.5E-14 5.1E-19 145.4 25.1 371 179-583 12-420 (452)
40 3uq3_A Heat shock protein STI1 99.7 4E-14 1.4E-18 131.2 25.3 225 311-584 6-236 (258)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-14 5.1E-19 135.6 20.5 248 102-368 17-269 (275)
42 3uq3_A Heat shock protein STI1 99.6 1E-13 3.4E-18 128.5 25.7 225 275-548 5-235 (258)
43 2h6f_A Protein farnesyltransfe 99.6 2.4E-13 8.3E-18 132.3 27.7 234 125-374 96-348 (382)
44 1ouv_A Conserved hypothetical 99.6 1.4E-12 4.9E-17 121.9 32.0 223 125-374 5-251 (273)
45 2pl2_A Hypothetical conserved 99.6 7.5E-14 2.6E-18 125.4 22.2 200 202-407 2-212 (217)
46 2ho1_A Type 4 fimbrial biogene 99.6 4.1E-13 1.4E-17 123.9 27.6 201 126-339 37-238 (252)
47 1ouv_A Conserved hypothetical 99.6 1.7E-12 5.7E-17 121.5 32.0 225 161-410 4-252 (273)
48 3u4t_A TPR repeat-containing p 99.6 2.5E-13 8.5E-18 127.0 25.0 234 127-373 4-249 (272)
49 2vq2_A PILW, putative fimbrial 99.6 7.7E-13 2.6E-17 119.6 26.9 202 125-338 7-210 (225)
50 3u4t_A TPR repeat-containing p 99.6 6.2E-13 2.1E-17 124.3 26.2 228 179-410 12-251 (272)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.7E-14 1.6E-18 132.2 18.5 250 137-403 16-269 (275)
52 4e6h_A MRNA 3'-END-processing 99.6 7.3E-11 2.5E-15 122.6 43.6 438 146-600 52-584 (679)
53 2h6f_A Protein farnesyltransfe 99.6 4.1E-13 1.4E-17 130.7 25.0 252 160-426 94-364 (382)
54 2vq2_A PILW, putative fimbrial 99.6 9.1E-13 3.1E-17 119.1 25.7 203 161-373 6-210 (225)
55 2ho1_A Type 4 fimbrial biogene 99.6 1.1E-12 3.7E-17 121.1 25.8 192 179-374 46-238 (252)
56 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-13 6.2E-18 125.5 20.2 201 125-339 22-222 (243)
57 4e6h_A MRNA 3'-END-processing 99.6 2.9E-10 1E-14 118.1 44.6 441 108-565 50-584 (679)
58 3sf4_A G-protein-signaling mod 99.5 3.9E-13 1.3E-17 133.7 21.7 279 123-408 6-335 (406)
59 4a1s_A PINS, partner of inscut 99.5 2.9E-13 9.9E-18 135.0 20.3 273 127-409 49-372 (411)
60 2q7f_A YRRB protein; TPR, prot 99.5 6.1E-13 2.1E-17 121.9 20.2 205 381-592 24-228 (243)
61 3ro2_A PINS homolog, G-protein 99.5 1.2E-12 4.1E-17 126.4 20.9 277 126-409 5-332 (338)
62 3sf4_A G-protein-signaling mod 99.5 1.5E-12 5.1E-17 129.5 21.2 228 179-407 18-294 (406)
63 4a1s_A PINS, partner of inscut 99.5 2.8E-12 9.6E-17 127.9 22.0 272 211-513 54-371 (411)
64 3ro2_A PINS homolog, G-protein 99.5 2.2E-12 7.4E-17 124.5 19.7 273 95-374 10-332 (338)
65 2ond_A Cleavage stimulation fa 99.5 6E-11 2.1E-15 112.9 29.2 218 143-374 33-270 (308)
66 3ulq_A Response regulator aspa 99.5 7.7E-12 2.6E-16 123.3 23.4 227 354-583 112-367 (383)
67 3vtx_A MAMA; tetratricopeptide 99.5 1.8E-11 6E-16 106.8 22.6 167 125-304 4-170 (184)
68 3ulq_A Response regulator aspa 99.5 2.2E-11 7.4E-16 120.1 25.5 230 137-373 23-292 (383)
69 3vtx_A MAMA; tetratricopeptide 99.4 2.3E-11 8E-16 106.0 22.5 167 162-339 4-170 (184)
70 4abn_A Tetratricopeptide repea 99.4 6.8E-12 2.3E-16 126.9 20.8 212 106-333 84-315 (474)
71 2ond_A Cleavage stimulation fa 99.4 9.1E-11 3.1E-15 111.6 27.3 219 107-339 33-270 (308)
72 3nf1_A KLC 1, kinesin light ch 99.4 2.1E-12 7.3E-17 123.2 14.8 242 159-408 23-306 (311)
73 4abn_A Tetratricopeptide repea 99.4 8.5E-12 2.9E-16 126.2 19.6 212 142-368 84-315 (474)
74 3nf1_A KLC 1, kinesin light ch 99.4 3E-12 1E-16 122.2 14.9 242 124-373 25-306 (311)
75 3q15_A PSP28, response regulat 99.4 1.7E-10 5.8E-15 113.4 25.4 225 355-583 111-364 (378)
76 1hz4_A MALT regulatory protein 99.4 6.8E-10 2.3E-14 108.9 29.2 272 94-373 18-321 (373)
77 3q15_A PSP28, response regulat 99.3 3.6E-10 1.2E-14 111.0 25.6 243 124-372 8-288 (378)
78 1hz4_A MALT regulatory protein 99.3 7.6E-10 2.6E-14 108.5 27.3 274 128-408 16-321 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.3 8.2E-11 2.8E-15 123.8 21.4 166 125-303 8-173 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.3 1.2E-10 4.2E-15 122.4 20.7 170 158-338 4-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.3 3.3E-10 1.1E-14 98.5 20.3 155 179-337 17-171 (186)
82 3as5_A MAMA; tetratricopeptide 99.3 2.9E-10 1E-14 98.8 19.0 166 126-304 8-173 (186)
83 3edt_B KLC 2, kinesin light ch 99.3 4.8E-11 1.6E-15 111.9 14.4 230 102-339 13-281 (283)
84 4i17_A Hypothetical protein; T 99.2 1.2E-09 4E-14 98.8 21.6 195 124-339 5-209 (228)
85 4i17_A Hypothetical protein; T 99.2 1.4E-09 4.8E-14 98.3 21.4 210 378-601 5-224 (228)
86 3edt_B KLC 2, kinesin light ch 99.2 2.4E-10 8.3E-15 107.0 14.6 206 203-409 41-281 (283)
87 1qqe_A Vesicular transport pro 99.2 2.5E-09 8.6E-14 100.6 20.4 140 106-268 33-186 (292)
88 1qqe_A Vesicular transport pro 99.2 7.6E-10 2.6E-14 104.2 16.7 245 293-592 3-275 (292)
89 3qky_A Outer membrane assembly 99.1 2.8E-09 9.6E-14 98.6 17.8 102 125-233 14-125 (261)
90 3urz_A Uncharacterized protein 99.1 1E-08 3.4E-13 91.0 18.8 165 126-304 4-186 (208)
91 3mv2_B Coatomer subunit epsilo 99.1 6.6E-08 2.3E-12 89.0 24.5 242 179-444 22-282 (310)
92 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.7E-08 5.7E-13 90.9 20.0 188 126-340 4-214 (225)
93 2fo7_A Synthetic consensus TPR 99.0 1.3E-08 4.4E-13 82.9 17.1 130 452-584 3-132 (136)
94 3qky_A Outer membrane assembly 99.0 7.5E-09 2.6E-13 95.7 17.4 185 94-304 19-224 (261)
95 3mv2_B Coatomer subunit epsilo 99.0 9.7E-08 3.3E-12 87.9 24.0 78 364-442 85-163 (310)
96 2fo7_A Synthetic consensus TPR 99.0 1.9E-08 6.5E-13 81.8 17.4 129 128-268 3-131 (136)
97 2uy1_A Cleavage stimulation fa 99.0 4.5E-07 1.5E-11 91.4 30.2 377 160-583 12-412 (493)
98 2pzi_A Probable serine/threoni 99.0 4.5E-09 1.5E-13 111.2 16.2 177 137-325 402-583 (681)
99 4ga2_A E3 SUMO-protein ligase 99.0 2.9E-09 1E-13 88.8 11.3 145 97-255 4-149 (150)
100 2pzi_A Probable serine/threoni 99.0 7.9E-09 2.7E-13 109.3 16.8 175 101-290 402-583 (681)
101 3dra_A Protein farnesyltransfe 99.0 6.1E-07 2.1E-11 83.5 27.3 173 103-290 46-235 (306)
102 3urz_A Uncharacterized protein 99.0 3.7E-08 1.3E-12 87.4 17.9 171 179-373 13-185 (208)
103 3rjv_A Putative SEL1 repeat pr 99.0 1.6E-07 5.4E-12 83.5 21.8 176 399-586 5-199 (212)
104 3dra_A Protein farnesyltransfe 98.9 1.1E-06 3.8E-11 81.8 27.3 233 183-420 46-298 (306)
105 3rjv_A Putative SEL1 repeat pr 98.9 1.4E-07 4.8E-12 83.8 20.6 177 108-306 4-199 (212)
106 2uy1_A Cleavage stimulation fa 98.9 6.6E-06 2.3E-10 82.9 35.1 203 104-339 28-242 (493)
107 2r5s_A Uncharacterized protein 98.9 1.6E-08 5.6E-13 87.0 13.8 161 128-301 8-170 (176)
108 2r5s_A Uncharacterized protein 98.9 1.9E-08 6.4E-13 86.6 13.7 155 179-337 15-171 (176)
109 3qou_A Protein YBBN; thioredox 98.9 8.3E-08 2.8E-12 89.8 19.0 167 123-302 114-282 (287)
110 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.3E-07 4.3E-12 85.0 18.7 181 98-306 12-215 (225)
111 4ga2_A E3 SUMO-protein ligase 98.9 1E-08 3.6E-13 85.4 10.7 142 135-289 6-148 (150)
112 2ifu_A Gamma-SNAP; membrane fu 98.9 9.2E-08 3.1E-12 90.6 18.2 199 139-372 4-222 (307)
113 3qou_A Protein YBBN; thioredox 98.9 8.4E-08 2.9E-12 89.8 17.5 167 160-337 114-282 (287)
114 2vsy_A XCC0866; transferase, g 98.9 7.3E-08 2.5E-12 100.2 18.4 156 139-307 2-160 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 7E-08 2.4E-12 91.5 15.1 93 132-232 42-142 (307)
116 2vsy_A XCC0866; transferase, g 98.8 1.4E-07 4.9E-12 97.9 18.6 154 183-340 2-158 (568)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5E-07 1.7E-11 80.3 19.1 88 421-513 12-99 (213)
118 3q7a_A Farnesyltransferase alp 98.8 1.1E-05 3.6E-10 76.0 27.6 135 186-324 105-256 (349)
119 3u3w_A Transcriptional activat 98.7 1.7E-06 5.9E-11 81.2 21.8 162 422-583 82-265 (293)
120 4gco_A Protein STI-1; structur 98.7 4.8E-07 1.7E-11 72.5 14.8 98 126-234 13-110 (126)
121 4gco_A Protein STI-1; structur 98.7 5.5E-07 1.9E-11 72.2 14.5 104 487-594 15-118 (126)
122 2c2l_A CHIP, carboxy terminus 98.7 1.1E-07 3.9E-12 88.5 11.8 98 125-233 3-100 (281)
123 4f3v_A ESX-1 secretion system 98.7 1.7E-06 5.7E-11 78.6 18.5 194 138-339 18-237 (282)
124 3u3w_A Transcriptional activat 98.7 8.5E-06 2.9E-10 76.4 24.3 91 317-407 82-182 (293)
125 1a17_A Serine/threonine protei 98.7 1.1E-06 3.9E-11 74.2 16.6 129 126-266 13-143 (166)
126 3gyz_A Chaperone protein IPGC; 98.7 5.3E-07 1.8E-11 74.6 13.9 98 125-233 35-132 (151)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.5E-06 8.7E-11 75.6 19.4 127 208-339 9-150 (213)
128 3q7a_A Farnesyltransferase alp 98.6 1.9E-05 6.6E-10 74.2 25.8 223 182-409 66-331 (349)
129 2qfc_A PLCR protein; TPR, HTH, 98.6 2.7E-06 9.2E-11 79.8 20.2 128 455-582 120-264 (293)
130 2e2e_A Formate-dependent nitri 98.6 2.6E-07 9E-12 79.4 11.6 135 462-601 22-159 (177)
131 1a17_A Serine/threonine protei 98.6 1.3E-06 4.6E-11 73.8 16.0 129 451-582 14-144 (166)
132 2qfc_A PLCR protein; TPR, HTH, 98.6 3.9E-06 1.3E-10 78.7 20.0 169 126-302 75-264 (293)
133 3gyz_A Chaperone protein IPGC; 98.6 7.5E-07 2.6E-11 73.7 13.0 101 160-269 33-133 (151)
134 1na0_A Designed protein CTPR3; 98.6 2.6E-06 8.9E-11 67.8 15.9 98 126-234 9-106 (125)
135 2lni_A Stress-induced-phosphop 98.6 1.2E-06 4.1E-11 70.8 13.8 119 123-253 13-131 (133)
136 2vyi_A SGTA protein; chaperone 98.6 2E-06 6.8E-11 69.1 14.8 119 125-255 11-129 (131)
137 4f3v_A ESX-1 secretion system 98.6 3.2E-06 1.1E-10 76.8 17.2 189 179-374 16-237 (282)
138 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.7E-11 76.6 14.5 156 181-337 3-174 (203)
139 2vgx_A Chaperone SYCD; alterna 98.5 5.5E-07 1.9E-11 74.6 10.7 97 486-584 22-118 (148)
140 2e2e_A Formate-dependent nitri 98.5 1.1E-06 3.8E-11 75.4 13.1 120 138-269 22-144 (177)
141 2lni_A Stress-induced-phosphop 98.5 2.7E-06 9.1E-11 68.7 14.7 118 449-569 15-132 (133)
142 1na0_A Designed protein CTPR3; 98.5 3.8E-06 1.3E-10 66.8 15.2 97 451-549 10-106 (125)
143 3gw4_A Uncharacterized protein 98.5 1.5E-06 5.1E-11 76.4 13.6 97 207-303 68-175 (203)
144 1p5q_A FKBP52, FK506-binding p 98.5 2.4E-06 8.4E-11 81.7 15.7 130 451-582 148-292 (336)
145 2vyi_A SGTA protein; chaperone 98.5 3.2E-06 1.1E-10 67.9 14.0 118 450-570 12-129 (131)
146 2c2l_A CHIP, carboxy terminus 98.5 2.1E-06 7.2E-11 79.9 14.2 99 204-304 3-101 (281)
147 1p5q_A FKBP52, FK506-binding p 98.5 3.7E-06 1.3E-10 80.5 16.2 153 104-267 127-292 (336)
148 3upv_A Heat shock protein STI1 98.5 4.7E-06 1.6E-10 66.7 14.1 97 126-233 4-100 (126)
149 2vgx_A Chaperone SYCD; alterna 98.4 1.1E-06 3.8E-11 72.7 10.1 101 160-269 18-118 (148)
150 4gcn_A Protein STI-1; structur 98.4 2.9E-06 9.8E-11 68.1 12.1 105 487-594 10-120 (127)
151 4gcn_A Protein STI-1; structur 98.4 4.9E-06 1.7E-10 66.7 13.4 106 126-243 8-119 (127)
152 3upv_A Heat shock protein STI1 98.4 5.3E-06 1.8E-10 66.4 13.5 96 487-584 6-101 (126)
153 1elw_A TPR1-domain of HOP; HOP 98.4 1.3E-05 4.5E-10 62.8 15.7 98 126-234 4-101 (118)
154 3dss_A Geranylgeranyl transfer 98.4 0.00015 5.1E-09 67.9 24.1 131 186-320 90-237 (331)
155 2xcb_A PCRH, regulatory protei 98.4 4.7E-06 1.6E-10 68.4 12.5 90 491-582 24-113 (142)
156 2xcb_A PCRH, regulatory protei 98.4 4.4E-06 1.5E-10 68.5 12.2 98 125-233 17-114 (142)
157 1elw_A TPR1-domain of HOP; HOP 98.4 1.2E-05 4E-10 63.1 14.3 97 486-584 5-101 (118)
158 1elr_A TPR2A-domain of HOP; HO 98.3 6.3E-06 2.1E-10 66.2 12.5 112 126-249 4-121 (131)
159 2kck_A TPR repeat; tetratricop 98.3 7.1E-06 2.4E-10 63.7 12.4 99 125-234 5-106 (112)
160 3q49_B STIP1 homology and U bo 98.3 1.4E-05 4.8E-10 64.8 14.2 99 124-233 7-105 (137)
161 2fbn_A 70 kDa peptidylprolyl i 98.3 8.2E-06 2.8E-10 71.4 13.4 126 126-260 38-176 (198)
162 1hxi_A PEX5, peroxisome target 98.3 6.3E-06 2.2E-10 65.3 11.5 95 128-233 19-113 (121)
163 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-05 3.8E-10 70.5 14.0 133 451-585 39-187 (198)
164 3dss_A Geranylgeranyl transfer 98.3 0.00038 1.3E-08 65.1 24.9 133 322-459 41-188 (331)
165 3sz7_A HSC70 cochaperone (SGT) 98.3 1.5E-05 5.2E-10 67.1 14.3 99 125-234 10-108 (164)
166 2dba_A Smooth muscle cell asso 98.3 3.2E-05 1.1E-09 63.6 16.0 109 484-597 27-139 (148)
167 3sz7_A HSC70 cochaperone (SGT) 98.3 1.1E-05 3.7E-10 68.1 13.1 99 449-549 10-108 (164)
168 2xev_A YBGF; tetratricopeptide 98.3 2.4E-05 8.2E-10 62.7 14.5 99 128-234 4-105 (129)
169 3q49_B STIP1 homology and U bo 98.2 2.3E-05 7.9E-10 63.5 13.7 96 485-582 9-104 (137)
170 2kck_A TPR repeat; tetratricop 98.2 1.4E-05 4.9E-10 61.9 11.5 89 179-269 15-106 (112)
171 1elr_A TPR2A-domain of HOP; HO 98.2 1.2E-05 4.1E-10 64.5 11.3 90 179-269 13-108 (131)
172 1hxi_A PEX5, peroxisome target 98.2 1.4E-05 4.7E-10 63.3 11.0 93 489-583 21-113 (121)
173 4b4t_Q 26S proteasome regulato 98.2 6.4E-05 2.2E-09 74.9 18.5 199 132-337 10-243 (434)
174 2dba_A Smooth muscle cell asso 98.2 7.5E-05 2.6E-09 61.3 15.6 99 203-304 26-128 (148)
175 4b4t_Q 26S proteasome regulato 98.2 7.4E-05 2.5E-09 74.4 18.4 196 101-303 15-244 (434)
176 3ro3_A PINS homolog, G-protein 98.1 3E-05 1E-09 64.8 12.6 100 126-232 9-116 (164)
177 2xev_A YBGF; tetratricopeptide 98.1 6.4E-05 2.2E-09 60.1 13.3 86 495-583 12-104 (129)
178 3k9i_A BH0479 protein; putativ 98.1 8E-06 2.7E-10 64.3 7.6 86 498-584 3-90 (117)
179 1wao_1 Serine/threonine protei 98.1 3.7E-06 1.3E-10 84.6 6.5 87 136-233 16-102 (477)
180 3rkv_A Putative peptidylprolyl 98.1 5.8E-05 2E-09 63.4 12.9 105 126-240 11-130 (162)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4.1E-05 1.4E-09 76.6 13.8 87 486-574 318-404 (457)
182 3rkv_A Putative peptidylprolyl 98.1 4.4E-05 1.5E-09 64.1 12.1 68 521-591 64-131 (162)
183 3ro3_A PINS homolog, G-protein 98.1 4E-05 1.4E-09 64.0 11.8 96 207-302 11-116 (164)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 6.2E-05 2.1E-09 75.3 14.8 145 105-260 249-405 (457)
185 2hr2_A Hypothetical protein; a 98.0 9.4E-05 3.2E-09 60.4 12.9 100 126-233 11-130 (159)
186 1ihg_A Cyclophilin 40; ppiase 98.0 6.7E-05 2.3E-09 72.6 13.9 124 126-258 223-359 (370)
187 3k9i_A BH0479 protein; putativ 98.0 1.1E-05 3.6E-10 63.6 6.8 87 139-233 3-89 (117)
188 1wao_1 Serine/threonine protei 98.0 2.6E-05 8.7E-10 78.5 10.5 118 179-299 15-134 (477)
189 2if4_A ATFKBP42; FKBP-like, al 98.0 2.6E-05 9E-10 74.6 9.7 100 487-590 232-332 (338)
190 1dce_A Protein (RAB geranylger 97.9 0.00074 2.5E-08 69.2 20.2 171 141-325 44-241 (567)
191 1ihg_A Cyclophilin 40; ppiase 97.9 9.7E-05 3.3E-09 71.4 12.9 90 485-576 273-362 (370)
192 3n71_A Histone lysine methyltr 97.9 7.1E-05 2.4E-09 74.7 12.2 126 135-267 318-462 (490)
193 1klx_A Cysteine rich protein B 97.9 0.0005 1.7E-08 55.7 14.9 112 464-586 9-128 (138)
194 3n71_A Histone lysine methyltr 97.9 5.5E-05 1.9E-09 75.6 10.4 127 100-233 319-463 (490)
195 2if4_A ATFKBP42; FKBP-like, al 97.9 5.8E-05 2E-09 72.2 10.1 149 126-304 179-328 (338)
196 1klx_A Cysteine rich protein B 97.7 0.00084 2.9E-08 54.3 14.0 111 184-305 9-127 (138)
197 2l6j_A TPR repeat-containing p 97.7 3.4E-05 1.1E-09 59.8 5.4 94 125-229 3-102 (111)
198 2hr2_A Hypothetical protein; a 97.7 0.00049 1.7E-08 56.2 12.0 24 349-372 106-129 (159)
199 1dce_A Protein (RAB geranylger 97.7 0.0014 4.9E-08 67.0 18.1 171 185-360 44-241 (567)
200 1zu2_A Mitochondrial import re 97.6 0.00015 5E-09 59.2 7.8 99 137-248 13-132 (158)
201 1na3_A Designed protein CTPR2; 97.6 0.0006 2.1E-08 50.2 10.8 82 125-217 8-89 (91)
202 2l6j_A TPR repeat-containing p 97.6 4.7E-05 1.6E-09 58.9 4.0 63 486-549 5-67 (111)
203 2kat_A Uncharacterized protein 97.6 0.00057 1.9E-08 53.2 10.0 79 468-548 3-81 (115)
204 2kat_A Uncharacterized protein 97.5 0.00062 2.1E-08 53.0 10.2 79 108-198 3-81 (115)
205 1zu2_A Mitochondrial import re 97.5 0.00029 1E-08 57.4 8.2 98 179-280 11-129 (158)
206 1na3_A Designed protein CTPR2; 97.4 0.0018 6E-08 47.5 10.5 70 179-250 18-87 (91)
207 3ma5_A Tetratricopeptide repea 97.3 0.0015 5.1E-08 49.2 9.2 66 123-198 4-69 (100)
208 3ma5_A Tetratricopeptide repea 97.2 0.0014 4.7E-08 49.5 8.2 62 485-547 7-68 (100)
209 3qww_A SET and MYND domain-con 97.0 0.0025 8.7E-08 62.4 9.4 88 138-232 310-409 (433)
210 3qww_A SET and MYND domain-con 96.9 0.0032 1.1E-07 61.8 9.0 90 102-198 310-410 (433)
211 1pc2_A Mitochondria fission pr 96.8 0.012 4.3E-07 47.2 10.3 91 502-596 15-110 (152)
212 3bee_A Putative YFRE protein; 96.7 0.018 6.1E-07 42.4 10.4 80 518-600 4-86 (93)
213 3ly7_A Transcriptional activat 96.7 0.034 1.2E-06 52.2 14.6 63 274-338 276-338 (372)
214 3qwp_A SET and MYND domain-con 96.7 0.0075 2.6E-07 59.2 10.6 94 132-232 293-398 (429)
215 3mkq_A Coatomer beta'-subunit; 96.7 0.12 4.1E-06 55.8 21.0 161 92-301 601-762 (814)
216 3mkq_A Coatomer beta'-subunit; 96.7 0.1 3.5E-06 56.3 20.3 46 356-407 663-708 (814)
217 3ly7_A Transcriptional activat 96.6 0.087 3E-06 49.5 16.3 46 123-171 191-241 (372)
218 2kc7_A BFR218_protein; tetratr 96.5 0.025 8.6E-07 42.0 10.2 59 132-200 6-65 (99)
219 2v5f_A Prolyl 4-hydroxylase su 96.5 0.031 1.1E-06 42.2 10.6 70 124-200 3-76 (104)
220 3qwp_A SET and MYND domain-con 96.5 0.011 3.7E-07 58.0 9.9 91 101-198 298-399 (429)
221 3bee_A Putative YFRE protein; 96.2 0.051 1.8E-06 39.9 10.1 68 123-200 3-73 (93)
222 3mkq_B Coatomer subunit alpha; 96.2 0.4 1.4E-05 39.6 16.6 127 180-336 15-141 (177)
223 3u64_A Protein TP_0956; tetrat 96.2 0.24 8.2E-06 44.6 16.0 85 256-342 179-272 (301)
224 2v5f_A Prolyl 4-hydroxylase su 96.0 0.04 1.4E-06 41.6 9.0 65 485-549 5-75 (104)
225 2kc7_A BFR218_protein; tetratr 96.0 0.051 1.8E-06 40.2 9.5 58 491-549 6-64 (99)
226 3mkq_B Coatomer subunit alpha; 95.7 0.36 1.2E-05 39.9 13.8 130 422-581 12-141 (177)
227 1wy6_A Hypothetical protein ST 95.7 0.53 1.8E-05 36.4 15.2 84 498-587 74-157 (172)
228 1wy6_A Hypothetical protein ST 95.6 0.57 2E-05 36.3 17.1 140 180-341 17-156 (172)
229 3u64_A Protein TP_0956; tetrat 95.6 0.2 7E-06 45.0 12.8 94 221-316 179-283 (301)
230 1pc2_A Mitochondria fission pr 95.4 0.14 5E-06 41.1 10.2 82 186-269 14-100 (152)
231 4h7y_A Dual specificity protei 95.1 0.15 5E-06 40.5 9.0 65 533-599 73-137 (161)
232 1nzn_A CGI-135 protein, fissio 95.1 0.12 3.9E-06 40.0 8.3 87 501-591 17-108 (126)
233 4ady_A RPN2, 26S proteasome re 94.7 5.4 0.00019 42.6 34.1 152 94-268 74-258 (963)
234 4h7y_A Dual specificity protei 93.7 1.5 5E-05 34.9 11.6 33 123-155 10-48 (161)
235 4fhn_B Nucleoporin NUP120; pro 93.5 1.7 5.8E-05 48.7 16.9 45 103-153 825-869 (1139)
236 1nzn_A CGI-135 protein, fissio 93.3 0.48 1.7E-05 36.5 8.4 84 464-549 15-103 (126)
237 3lvg_A Clathrin heavy chain 1; 93.0 9E-06 3.1E-10 77.5 -22.0 226 161-429 52-277 (624)
238 3o48_A Mitochondria fission 1 92.6 1.4 4.9E-05 34.1 10.0 79 516-596 36-117 (134)
239 1y8m_A FIS1; mitochondria, unk 92.5 3.2 0.00011 32.6 12.1 74 517-592 36-112 (144)
240 2ff4_A Probable regulatory pro 92.3 2.9 9.7E-05 40.2 14.5 66 210-276 176-246 (388)
241 3lvg_A Clathrin heavy chain 1; 91.9 1.5E-05 5E-10 76.1 -22.1 264 275-575 54-324 (624)
242 4b4t_P 26S proteasome regulato 91.7 11 0.00036 37.0 21.0 192 140-338 30-246 (445)
243 4b4t_P 26S proteasome regulato 91.4 11 0.00038 36.8 21.3 93 315-407 142-245 (445)
244 4gns_B Protein CSD3, chitin bi 90.8 0.92 3.2E-05 47.3 9.7 52 528-581 345-397 (754)
245 2ff4_A Probable regulatory pro 90.3 1.9 6.6E-05 41.4 11.1 122 103-250 128-255 (388)
246 1v54_E Cytochrome C oxidase po 90.1 4.2 0.00014 29.6 10.3 63 500-563 25-87 (109)
247 1v54_E Cytochrome C oxidase po 89.8 4.4 0.00015 29.5 9.7 73 528-601 17-90 (109)
248 2wpv_A GET4, UPF0363 protein Y 89.4 13 0.00043 34.1 17.6 109 132-264 39-158 (312)
249 4gns_B Protein CSD3, chitin bi 89.4 1.9 6.3E-05 45.1 10.5 51 355-406 347-397 (754)
250 3txn_A 26S proteasome regulato 87.5 20 0.00069 34.1 23.0 93 315-407 104-208 (394)
251 2y69_E Cytochrome C oxidase su 87.3 7.2 0.00025 30.1 9.7 77 486-563 52-130 (152)
252 4ady_A RPN2, 26S proteasome re 87.2 35 0.0012 36.6 35.5 314 283-606 382-722 (963)
253 2wpv_A GET4, UPF0363 protein Y 87.0 18 0.00062 33.1 20.8 105 179-298 42-157 (312)
254 2y69_E Cytochrome C oxidase su 86.9 9.1 0.00031 29.6 10.3 44 539-582 72-115 (152)
255 4fhn_B Nucleoporin NUP120; pro 86.6 17 0.00057 40.7 16.9 149 246-401 818-992 (1139)
256 3ffl_A Anaphase-promoting comp 86.3 3.7 0.00013 33.3 8.3 52 104-155 34-92 (167)
257 3lpz_A GET4 (YOR164C homolog); 86.0 21 0.00073 32.9 21.7 25 484-508 135-159 (336)
258 3o48_A Mitochondria fission 1 84.9 11 0.00038 29.2 9.9 12 322-333 90-101 (134)
259 3lpz_A GET4 (YOR164C homolog); 83.0 29 0.00099 32.0 22.3 25 274-298 135-159 (336)
260 3esl_A Checkpoint serine/threo 80.9 11 0.00037 31.7 9.2 56 498-553 92-148 (202)
261 4b4t_R RPN7, 26S proteasome re 80.1 25 0.00085 34.1 13.2 53 179-231 140-194 (429)
262 4b4t_R RPN7, 26S proteasome re 79.6 27 0.00093 33.8 13.3 115 111-232 115-235 (429)
263 1y8m_A FIS1; mitochondria, unk 76.8 25 0.00087 27.6 11.7 12 322-333 89-100 (144)
264 3ffl_A Anaphase-promoting comp 75.9 30 0.001 28.0 11.1 125 125-269 19-151 (167)
265 2p58_C Putative type III secre 74.1 23 0.00077 25.7 8.0 52 283-340 48-99 (116)
266 4b4t_S RPN3, 26S proteasome re 73.8 9.2 0.00032 37.7 7.9 65 126-199 231-299 (523)
267 4a1g_A Mitotic checkpoint seri 72.1 24 0.00081 28.2 8.6 51 539-589 84-135 (152)
268 2uwj_G Type III export protein 67.7 26 0.00091 25.4 6.9 52 283-340 47-98 (115)
269 2wvi_A Mitotic checkpoint seri 66.4 32 0.0011 27.8 8.3 47 504-550 79-126 (164)
270 3esl_A Checkpoint serine/threo 65.8 60 0.002 27.3 10.4 53 256-308 95-148 (202)
271 1zbp_A Hypothetical protein VP 65.8 33 0.0011 30.4 8.9 114 458-584 5-129 (273)
272 3eiq_C Programmed cell death p 63.2 65 0.0022 30.1 11.0 73 453-526 220-294 (358)
273 2d2s_A Exocyst complex compone 61.3 56 0.0019 28.4 9.7 41 105-155 7-47 (235)
274 4b4t_S RPN3, 26S proteasome re 58.8 1.2E+02 0.004 30.0 12.3 65 205-269 231-299 (523)
275 3kae_A CDC27, possible protein 57.4 77 0.0026 25.8 9.6 101 133-269 40-143 (242)
276 1wdy_A 2-5A-dependent ribonucl 52.9 33 0.0011 30.4 7.3 19 211-229 8-26 (285)
277 1wgl_A TOLL-interacting protei 52.4 17 0.00058 23.5 3.6 44 81-125 14-57 (59)
278 1wdy_A 2-5A-dependent ribonucl 50.9 36 0.0012 30.2 7.2 46 246-295 8-56 (285)
279 4aez_C MAD3, mitotic spindle c 46.3 44 0.0015 28.6 6.3 52 502-553 131-183 (223)
280 2d2s_A Exocyst complex compone 46.0 1.5E+02 0.005 25.8 9.7 21 315-335 96-116 (235)
281 1x5b_A Signal transducing adap 44.5 1.2E+02 0.0042 24.4 11.4 20 218-237 130-149 (163)
282 1k1a_A B-cell lymphoma 3-encod 44.0 98 0.0033 26.4 8.8 24 213-236 14-37 (241)
283 1k1a_A B-cell lymphoma 3-encod 43.8 68 0.0023 27.4 7.7 85 247-335 13-101 (241)
284 2ion_A PDCD4, programmed cell 43.4 1.2E+02 0.0042 24.1 8.8 63 279-342 13-77 (152)
285 2uwj_G Type III export protein 42.8 95 0.0032 22.6 8.0 77 184-270 20-98 (115)
286 1qsa_A Protein (soluble lytic 42.5 2.9E+02 0.0099 28.1 36.1 118 457-578 292-436 (618)
287 4a1g_A Mitotic checkpoint seri 42.5 1.3E+02 0.0044 24.0 9.4 49 259-307 84-133 (152)
288 3eiq_C Programmed cell death p 42.3 2.2E+02 0.0074 26.6 12.8 63 348-411 220-284 (358)
289 2p58_C Putative type III secre 42.1 98 0.0033 22.5 9.0 77 184-270 21-99 (116)
290 2zu6_B Programmed cell death p 41.8 2E+02 0.0069 26.1 10.6 25 313-337 6-30 (307)
291 3eu9_A Huntingtin-interacting 41.5 37 0.0013 29.1 5.6 19 211-229 45-63 (240)
292 3jxi_A Vanilloid receptor-rela 40.8 23 0.00078 31.2 4.1 25 215-239 12-36 (260)
293 1wty_A Hypothetical protein TT 40.5 1.1E+02 0.0038 23.0 7.3 13 466-478 4-16 (119)
294 1elk_A Target of MYB1; superhe 40.2 1.4E+02 0.0048 23.8 8.4 19 219-237 136-154 (157)
295 2nsz_A Programmed cell death p 38.0 1.3E+02 0.0046 23.0 10.1 63 279-342 11-75 (129)
296 3bu8_A Telomeric repeat-bindin 37.1 1.3E+02 0.0044 25.5 7.3 49 501-549 88-143 (235)
297 3kea_A K1L; tropism, ANK repea 37.0 84 0.0029 28.1 7.3 16 318-333 166-181 (285)
298 2ijq_A Hypothetical protein; s 36.9 1.6E+02 0.0053 23.7 7.7 50 464-513 46-103 (161)
299 3kae_A CDC27, possible protein 36.9 1.4E+02 0.0047 24.4 7.2 54 494-547 71-141 (242)
300 2wvi_A Mitotic checkpoint seri 36.5 1.7E+02 0.0057 23.6 9.8 50 259-308 79-129 (164)
301 1bpo_A Protein (clathrin); cla 36.1 3E+02 0.01 26.7 10.7 96 158-262 356-451 (494)
302 4g8k_A 2-5A-dependent ribonucl 34.7 2.1E+02 0.0071 26.0 9.9 287 279-589 26-328 (337)
303 4gq2_M Nucleoporin NUP120; bet 34.2 1.7E+02 0.0057 31.9 10.1 126 101-254 821-950 (950)
304 1qsa_A Protein (soluble lytic 33.4 4E+02 0.014 27.1 40.2 351 152-544 61-437 (618)
305 3ltm_A Alpha-REP4; protein eng 33.4 2.1E+02 0.0071 23.7 18.6 111 203-325 31-141 (211)
306 3t8k_A Uncharacterized protein 33.0 1.3E+02 0.0045 24.7 7.3 23 251-273 46-68 (186)
307 1ug3_A EIF4GI, eukaryotic prot 32.9 1.2E+02 0.0041 28.1 7.7 22 245-266 16-37 (339)
308 1zbp_A Hypothetical protein VP 32.8 2.6E+02 0.009 24.7 15.0 54 136-199 7-60 (273)
309 3mv2_A Coatomer subunit alpha; 31.8 3E+02 0.01 25.1 10.7 48 502-549 187-236 (325)
310 2dhy_A CUE domain-containing p 31.8 59 0.002 21.6 3.7 38 81-118 23-60 (67)
311 3pvs_A Replication-associated 31.3 3.7E+02 0.013 26.0 14.0 55 322-376 267-326 (447)
312 3mv2_A Coatomer subunit alpha; 31.3 3.1E+02 0.01 25.1 15.2 30 277-306 209-238 (325)
313 3txn_A 26S proteasome regulato 30.7 3.5E+02 0.012 25.6 29.7 223 350-586 104-345 (394)
314 3eu9_A Huntingtin-interacting 30.7 98 0.0034 26.2 6.5 19 246-264 45-63 (240)
315 4ets_A Ferric uptake regulatio 30.2 87 0.003 25.2 5.5 23 527-549 39-61 (162)
316 3kea_A K1L; tropism, ANK repea 30.2 1.1E+02 0.0038 27.2 6.9 52 315-370 131-183 (285)
317 3hra_A Ankyrin repeat family p 30.1 72 0.0024 26.3 5.3 15 180-194 12-26 (201)
318 1ug3_A EIF4GI, eukaryotic prot 29.7 1.5E+02 0.005 27.5 7.7 25 313-337 14-38 (339)
319 2b7e_A PRE-mRNA processing pro 29.2 61 0.0021 20.8 3.3 32 537-568 3-35 (59)
320 3hra_A Ankyrin repeat family p 29.1 1.2E+02 0.004 24.9 6.6 15 215-229 12-26 (201)
321 2fe3_A Peroxide operon regulat 29.0 1.5E+02 0.005 23.3 6.5 17 534-550 35-51 (145)
322 4aez_C MAD3, mitotic spindle c 28.6 1.2E+02 0.004 26.0 6.0 51 223-273 132-183 (223)
323 2fe3_A Peroxide operon regulat 28.5 2.1E+02 0.0072 22.3 7.6 58 196-254 13-70 (145)
324 2zu6_B Programmed cell death p 28.2 3.4E+02 0.012 24.6 11.6 25 243-267 6-30 (307)
325 2xig_A Ferric uptake regulatio 28.1 1.8E+02 0.0063 22.9 7.0 44 386-429 32-75 (150)
326 2jul_A Calsenilin; EF-hand, ca 27.0 2.7E+02 0.0094 24.1 8.8 43 257-301 213-255 (256)
327 3t8k_A Uncharacterized protein 27.0 1.8E+02 0.0061 23.8 7.1 92 179-275 12-109 (186)
328 1mzb_A Ferric uptake regulatio 26.8 2.1E+02 0.0071 22.0 7.0 58 196-254 9-67 (136)
329 2r9g_A AAA ATPase, central reg 26.5 2.8E+02 0.0097 23.2 10.0 18 288-305 27-44 (204)
330 3eyy_A Putative iron uptake re 25.8 1.9E+02 0.0064 22.6 6.6 57 196-254 10-66 (145)
331 1mzb_A Ferric uptake regulatio 25.3 1.5E+02 0.0052 22.8 5.9 16 535-550 33-48 (136)
332 3mkr_B Coatomer subunit alpha; 25.3 3.9E+02 0.013 24.3 16.0 29 277-305 200-228 (320)
333 3ltm_A Alpha-REP4; protein eng 25.1 2.9E+02 0.0099 22.8 18.7 142 238-395 31-172 (211)
334 1otr_A Protein CUE2; protein-p 25.0 75 0.0026 19.5 3.1 35 82-116 10-44 (49)
335 3d5l_A Regulatory protein RECX 25.0 3.2E+02 0.011 23.2 10.2 49 432-481 93-141 (221)
336 2xig_A Ferric uptake regulatio 24.7 2.1E+02 0.007 22.6 6.7 44 561-604 32-75 (150)
337 2fu4_A Ferric uptake regulatio 24.5 1.7E+02 0.0058 19.9 6.3 32 398-429 35-66 (83)
338 2qx5_A Nucleoporin NIC96; mRNA 24.5 5.9E+02 0.02 26.1 17.9 22 211-232 158-179 (661)
339 2ion_A PDCD4, programmed cell 24.4 2.6E+02 0.009 22.1 9.0 22 350-371 14-35 (152)
340 2ijq_A Hypothetical protein; s 24.4 2.8E+02 0.0094 22.3 8.1 52 252-303 44-103 (161)
341 4gq2_M Nucleoporin NUP120; bet 24.2 4.7E+02 0.016 28.3 11.5 108 246-359 816-950 (950)
342 3eyy_A Putative iron uptake re 24.0 1.3E+02 0.0045 23.6 5.4 14 536-549 33-46 (145)
343 4ets_A Ferric uptake regulatio 22.2 1.5E+02 0.0053 23.7 5.5 56 198-254 26-83 (162)
344 2w57_A Ferric uptake regulatio 22.1 2.4E+02 0.0081 22.2 6.6 58 196-254 8-66 (150)
345 4fke_A Aminopeptidase N; zinc 22.0 7.6E+02 0.026 26.5 17.7 147 186-338 705-859 (909)
346 2w57_A Ferric uptake regulatio 21.7 1.6E+02 0.0056 23.2 5.6 35 535-569 32-66 (150)
347 2rfa_A Transient receptor pote 21.7 3.1E+02 0.011 22.9 8.0 19 212-230 41-59 (232)
348 3b7b_A Euchromatic histone-lys 21.1 78 0.0027 27.0 3.9 19 390-408 217-235 (237)
349 2nsz_A Programmed cell death p 21.1 2.8E+02 0.0096 21.1 10.2 22 350-371 12-33 (129)
350 3pvs_A Replication-associated 21.0 5.7E+02 0.019 24.6 13.9 56 357-412 267-327 (447)
351 1bpo_A Protein (clathrin); cla 20.9 5.8E+02 0.02 24.8 13.8 119 94-227 333-451 (494)
352 3l6a_A Eukaryotic translation 20.5 5.2E+02 0.018 24.1 11.3 216 279-497 16-245 (364)
353 1oyz_A Hypothetical protein YI 20.2 4.3E+02 0.015 23.0 22.7 235 308-567 35-279 (280)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-38 Score=335.19 Aligned_cols=453 Identities=9% Similarity=-0.031 Sum_probs=371.7
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP 203 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (609)
++...|+.++..+.+.|++++|..+++++.... ++...+..++. .|.+.|++++|+.+|+++... ++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~l~~-------~~~~~g~~~~A~~~~~~~~~~--~~ 148 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT----GNPNDAFWLAQ-------VYCCTGDYARAKCLLTKEDLY--NR 148 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----CCHHHHHHHHH-------HHHHTTCHHHHHHHHHHTCGG--GT
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC----CCchHHHHHHH-------HHHHcCcHHHHHHHHHHHhcc--cc
Confidence 466777778888888888888888887777542 23345555666 777788888888888777542 56
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---------------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI---------------GICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEE 268 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 268 (609)
+..+++.++.+|.+.|++++|.++|+++... +.+.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 149 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777788888888888888888877743211 2233567777788888888888888888887776
Q ss_pred cCCCCCHHh--------------------------------------HHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCH
Q 037911 269 EGFDPDLVT--------------------------------------YNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDL 310 (609)
Q Consensus 269 ~~~~~~~~~--------------------------------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 310 (609)
.+.. +... |+.++..|.+.|++++|.++|+++.+. .++.
T Consensus 229 ~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 305 (597)
T 2xpi_A 229 VDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSS 305 (597)
T ss_dssp HCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCH
T ss_pred hCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchH
Confidence 5321 2223 333356677889999999999999876 4689
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 037911 311 VTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGY 390 (609)
Q Consensus 311 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (609)
.+|+.++.++.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 999999999999999999999999999865 3377889999999999999999999999998653 44788999999999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037911 391 GKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADAL 470 (609)
Q Consensus 391 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
.+.|++++|.++|+++.+.. +.+..++..++.++.+.|++++|...++++...+ +.+..+|+.++.+|.+.|++++|.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998865 3478899999999999999999999999997765 457889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 471 LLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLES----GMLPD--SQICRVLINGYCMEKDVNKAEALLG 544 (609)
Q Consensus 471 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (609)
++|+++.+... .+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++
T Consensus 462 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999997643 57899999999999999999999999999875 66787 7899999999999999999999999
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 037911 545 FFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600 (609)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 600 (609)
++.+.+ +.+..+|..++.+|.+.|++++|.++|+++++. .|+.......+..+
T Consensus 541 ~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 541 QGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHT
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 999874 447789999999999999999999999999966 67665554444433
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-37 Score=326.68 Aligned_cols=441 Identities=12% Similarity=0.047 Sum_probs=381.4
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHH
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (609)
...|+++.|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+++.+... +.+..++..++. .|
T Consensus 95 ~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~-------~~ 160 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY----NRSSACRYLAAF-------CL 160 (597)
T ss_dssp HHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG----GTCHHHHHHHHH-------HH
T ss_pred HHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc----ccchhHHHHHHH-------HH
Confidence 446899999999999985 3568899999999999999999999999987643 467788889988 99
Q ss_pred HHhCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 037911 181 VKVGLIRESFKTFRKTLDV---------------GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNI 245 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 245 (609)
.+.|++++|+++|+++... +.+.+..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+..
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 239 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQ 239 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHH
Confidence 9999999999999954321 224468899999999999999999999999998754 223333333
Q ss_pred H--------------------------------------HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 037911 246 L--------------------------------------THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK 287 (609)
Q Consensus 246 l--------------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 287 (609)
+ +..|.+.|++++|.++|+++.+. +++..+++.++.+|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 2 45566789999999999999876 5789999999999999
Q ss_pred cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 288 KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSL 367 (609)
Q Consensus 288 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 367 (609)
.|++++|+++|+++.+.+.. +..++..++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999987654 78899999999999999999999999998653 45788999999999999999999999
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037911 368 LYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYV 447 (609)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 447 (609)
|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|...++++.... +
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 472 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q 472 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 99998753 3367899999999999999999999999999876 4478899999999999999999999999997654 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHH
Q 037911 448 PSLEIYNELMESLCKCDSVADALLLKDEMVDR----NIKPS--LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQ 521 (609)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 521 (609)
.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 551 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDAN 551 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChH
Confidence 57899999999999999999999999999875 56687 7899999999999999999999999999765 55889
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 522 ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
+|..++.+|.+.|++++|.+.++++.+.. +.+...+..+..+|
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 99999999999999999999999999873 33456666666554
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.1e-30 Score=263.54 Aligned_cols=206 Identities=17% Similarity=0.165 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---------hH
Q 037911 188 ESFKTFRKTLDVGFQPSIV-SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD---------VD 257 (609)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~---------~~ 257 (609)
.+..+.+++.+.+....+. .++.+|++|++.|++++|.++|++|.+.|+.||..||+.||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3445556666666555443 5778888888888888888888888888888888888888888877654 57
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 258 KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
+|.++|++|.+.|+.||..+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcc
Q 037911 338 HRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKE 393 (609)
Q Consensus 338 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (609)
+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888877653
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.7e-27 Score=235.25 Aligned_cols=382 Identities=14% Similarity=0.019 Sum_probs=186.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLL 212 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (609)
+..+.+.|++++|.+.+..+.+. .|.+...+..+.. .+...|++++|...++...+.. +.+..+|..+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~-------~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg 74 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSS-------IHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLG 74 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence 34444555555555555555543 2334444444444 4555555555555555555432 34455555555
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHh
Q 037911 213 NGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLN 292 (609)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 292 (609)
.++.+.|++++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHH
Confidence 55555555555555555554421 2223445555555555555555555555555442 112333444445555555555
Q ss_pred HHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 293 DAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 293 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
+|.+.|+++.+..+. +..+|..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|...+++..
T Consensus 153 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 153 EAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555543222 34455555555555555555555555555432 1123444445555555555555555555544
Q ss_pred HCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 037911 373 GNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEI 452 (609)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (609)
+.. +.+..++..+...+.+.|++++|+..++++.+.+ +.+..+
T Consensus 231 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~ 273 (388)
T 1w3b_A 231 SLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ------------------------------------PHFPDA 273 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC------------------------------------SSCHHH
T ss_pred hhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------------------------CCCHHH
Confidence 331 1123444444444555555555555554444432 223344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 037911 453 YNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM 532 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 532 (609)
|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..++.++.+
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 4455555555555555555555554432 1344455555555555555555555555554321 2234455555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037911 533 EKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDG 569 (609)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 569 (609)
.|++++|.+.++++.+.. +.+...|..+...+...|
T Consensus 352 ~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 555555555555555431 112344555555444443
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.1e-30 Score=261.51 Aligned_cols=207 Identities=14% Similarity=0.240 Sum_probs=181.2
Q ss_pred HHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC---------H
Q 037911 222 DQCWQVYEEMGRIGICPNT-HTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGR---------L 291 (609)
Q Consensus 222 ~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~ 291 (609)
..+..+.+++.+.++.... ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766554 45888999999999999999999999999999999999999999987664 6
Q ss_pred hHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 292 NDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEM 371 (609)
Q Consensus 292 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (609)
++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037911 372 MGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQD 428 (609)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 428 (609)
.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..|+..||+.++..++..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.7e-27 Score=234.29 Aligned_cols=375 Identities=13% Similarity=0.042 Sum_probs=255.0
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 4567777777777777776643 3445555566666666777777777766665532 3455666666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|...|+++.+.. +.+..+|..+..++.+.|++++|++.|+++.+.++. +...+..+...+...|++++|.+.|+++.+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666542 223445666666666666666666666666554322 233444555555555666666665555554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037911 339 RGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIY 418 (609)
Q Consensus 339 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (609)
.. +.+..+|..+...+...|++++|...|++++ +.+ +.+...+
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------------------------~~~-p~~~~~~ 206 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV-----------------------------------TLD-PNFLDAY 206 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------------------------------HHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------------hcC-CCcHHHH
Confidence 31 1234445555555555555555555555544 433 1234455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 037911 419 DYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGI 498 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 498 (609)
..+...+...|++++|...+++..... +.+..++..+...+.+.|++++|...|+++.+.+. .+..+|..+..++.+.
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHc
Confidence 555555666666666666666654432 34677888999999999999999999999998653 3577899999999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 037911 499 GRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQ 578 (609)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (609)
|++++|+..++++.+.. +.+..++..++..+.+.|++++|.+.++++.+.. +.+..++..++.+|.+.|++++|.+.|
T Consensus 285 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999853 6688899999999999999999999999998752 335678999999999999999999999
Q ss_pred HHHHHcCCCCChh-hHHHHHHHH
Q 037911 579 KRFLRLGFAPNNL-TCKYMIHSL 600 (609)
Q Consensus 579 ~~m~~~g~~p~~~-~~~~ll~~~ 600 (609)
+++++ +.|+.. .+..+-..+
T Consensus 363 ~~a~~--~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 363 KEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHh--hCCCCHHHHHhHHHHH
Confidence 99995 466644 444443333
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4e-24 Score=220.94 Aligned_cols=440 Identities=10% Similarity=-0.042 Sum_probs=242.4
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...+...+..+.+.|++++|+..|+++++.. |+...+..+.. +|.+.|++++|+..|+++++.+ +.+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~la~-------~~~~~g~~~~A~~~~~~al~~~-p~~~ 73 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK----EDPVFYSNLSA-------CYVSVGDLKKVVEMSTKALELK-PDYS 73 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----CCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-SCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----ccHHHHHhHHH-------HHHHHhhHHHHHHHHHHHhccC-hHHH
Confidence 4456667777777777777777777777652 24666666666 7777777777777777777654 4566
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSY 285 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 285 (609)
.+|..+..++...|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+...+..-....
T Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 74 KVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH
Confidence 677777777777777777777777777654 3344444444444444333333333332222221111111111100000
Q ss_pred HhcCCHhHHHHHHHHHhhCCc---------cCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC-------
Q 037911 286 CKKGRLNDAFYLYRIMYRRNV---------LPDLVTYTTLMNGLCK---EGKVREAHQLFHRMVH-----RGL------- 341 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~~~~~~---------~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~-----~g~------- 341 (609)
...........+...+..... ..+...+......+.. .|++++|..+|+++.+ ...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 001111111111111111100 0112333333333333 5666666666666655 211
Q ss_pred -CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 342 -SPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDY 420 (609)
Q Consensus 342 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 420 (609)
+.+...+..+...+...|++++|...++++.+.. |+...+..+...+...|++++|+..++++.+.. +.+...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 309 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHH
Confidence 1123455556666666666666666666666543 225556666666666666666666666666554 224556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 037911 421 LIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGR 500 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 500 (609)
+...+...|++++|...+++..... +.+...+..+...+...|++++|..+++++.+... .+..++..+...+...|+
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCC
Confidence 6666666666666666666665543 23455666666666677777777777776665421 234566666666667777
Q ss_pred HhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHH
Q 037911 501 SGEAVSLMDEMLESGM-LPD----SQICRVLINGYCM---EKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLS 572 (609)
Q Consensus 501 ~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 572 (609)
+++|...++++.+... .++ ...+..+...+.. .|++++|...++.+.+.. +.+...+..++.+|.+.|+++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHH
Confidence 7777777766654311 111 2356666666666 677777777777666552 224456666666777777777
Q ss_pred HHHHHHHHHHHc
Q 037911 573 KLMELQKRFLRL 584 (609)
Q Consensus 573 ~A~~~~~~m~~~ 584 (609)
+|.+.|+++++.
T Consensus 467 ~A~~~~~~a~~~ 478 (514)
T 2gw1_A 467 EAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.1e-23 Score=214.28 Aligned_cols=435 Identities=12% Similarity=-0.005 Sum_probs=309.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccc
Q 037911 95 ISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTE 174 (609)
Q Consensus 95 ~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (609)
..+......|+++.|+..|+.+... .|++..|..++.++...|++++|...++++++. .|.+...+..++.
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~--- 81 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL---KPDYSKVLLRRAS--- 81 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CSCCHHHHHHHHH---
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc---ChHHHHHHHHHHH---
Confidence 3445556678999999999999974 368999999999999999999999999999987 4667788888888
Q ss_pred cchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 037911 175 DCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 175 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 254 (609)
.|...|++++|+..|+++.+.+ +++......++..+........+.+.+..+...+..|+...+..-........
T Consensus 82 ----~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 82 ----ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp ----HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred ----HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 8999999999999999999876 44555555555555554444444444443333222222221111111111111
Q ss_pred ChHHHHHHHHHHHHcCC---------CCCHHhHHHHHHHHHh---cCCHhHHHHHHHHHhh-----CCc--------cCC
Q 037911 255 DVDKVNGFLEKIEEEGF---------DPDLVTYNTLISSYCK---KGRLNDAFYLYRIMYR-----RNV--------LPD 309 (609)
Q Consensus 255 ~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~p~ 309 (609)
.......+...+..... +.+...+......+.. .|++++|+..|+++.+ ... ..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 11111111111111111 1124444444444554 7888888888888877 311 123
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 037911 310 LVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQG 389 (609)
Q Consensus 310 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (609)
..++..+...+...|++++|..+++++.+.. |+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 4567778888888899999999998888764 337778888888888899999999998888753 3356778888888
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037911 390 YGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADA 469 (609)
Q Consensus 390 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.... +.+...+..+...+.+.|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 8889999999999988887753 356778888888888999999999888886543 34567888888999999999999
Q ss_pred HHHHHHHHHCCCC-CC----HHHHHHHHHHHhc---CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 037911 470 LLLKDEMVDRNIK-PS----LSTYRALICCFCG---IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEA 541 (609)
Q Consensus 470 ~~~~~~~~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 541 (609)
...++++.+.... ++ ...+..+..++.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|..
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999988764211 11 3478888888988 999999999999998753 4467788899999999999999999
Q ss_pred HHHHHHHc
Q 037911 542 LLGFFAKK 549 (609)
Q Consensus 542 ~~~~~~~~ 549 (609)
.++++.+.
T Consensus 471 ~~~~a~~~ 478 (514)
T 2gw1_A 471 LFEESADL 478 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999877
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=8.7e-23 Score=212.18 Aligned_cols=433 Identities=9% Similarity=-0.027 Sum_probs=241.2
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...|..++..+.+.|++++|...|+++++. .|.+...+..+.. .|.+.|++++|++.|+++.+.+ +.+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~-------~~~~~g~~~~A~~~~~~al~~~-p~~~ 93 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL---DPNEPVFYSNISA-------CYISTGDLEKVIEFTTKALEIK-PDHS 93 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh---CCCCcHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhcC-CchH
Confidence 445666677777777777777777777765 3455666666666 6777777777777777777654 4566
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCHHhHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGF--DPDLVTYNTLIS 283 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~ 283 (609)
.++..+..++...|++++|...|+.+.. .|+.. ...+..+...+...+|...++++..... .+........+.
T Consensus 94 ~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 94 KALLRRASANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 6777777777777777777777753321 22211 1223344445555667777776654310 001111122233
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCccCCHh-hHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCC--------HH
Q 037911 284 SYCKKGRLNDAFYLYRIMYRRNVLPDLV-TYTTLMNGLC--------KEGKVREAHQLFHRMVHRGLSPD--------IV 346 (609)
Q Consensus 284 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~--------~~~~~~~a~~~~~~m~~~g~~p~--------~~ 346 (609)
.+....+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+. .|+ ..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~ 244 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAAL 244 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHH
Confidence 344444544444433322221 11111 1111111111 123566666666666654 222 22
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037911 347 SYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALC 426 (609)
Q Consensus 347 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 426 (609)
++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|+..++++.+.. +.+..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 3445555566666667777777666654 3445566666666666677777777776666654 234566666666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 037911 427 QDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVS 506 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 506 (609)
..|++++|...+++..... +.+...+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|..
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHH
Confidence 6777777777666664433 23445666666666677777777777766665432 334566666666666777777777
Q ss_pred HHHHHHHCC-----CCCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCH
Q 037911 507 LMDEMLESG-----MLPDSQICRVLINGYCME----------KDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDL 571 (609)
Q Consensus 507 ~~~~~~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 571 (609)
.++++.+.. .......+..+...+... |++++|...++++.+.. +.+...+..+..+|.+.|++
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 776665421 111122233444555555 67777777777666552 23445666666777777777
Q ss_pred HHHHHHHHHHHHc
Q 037911 572 SKLMELQKRFLRL 584 (609)
Q Consensus 572 ~~A~~~~~~m~~~ 584 (609)
++|.+.|+++++.
T Consensus 479 ~~A~~~~~~al~~ 491 (537)
T 3fp2_A 479 DEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=6.4e-22 Score=200.74 Aligned_cols=300 Identities=12% Similarity=0.082 Sum_probs=193.6
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP 203 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (609)
.++..+..++..+.+.|++++|+.+|+++++. .|.+...+..++. .|...|++++|+..|+++.+.+ +.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~al~~~-p~ 92 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRAT-------VFLAMGKSKAALPDLTKVIQLK-MD 92 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCccHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 35677777888888888888888888888765 4456777777777 7888888888888888887765 45
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHH------------HHHHHHcCChHHHHHHHHHHH
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT----HTFNIL------------THVFCKNGDVDKVNGFLEKIE 267 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l------------~~~~~~~g~~~~a~~~~~~~~ 267 (609)
+..++..+..++.+.|++++|.+.|+++.+. .|+. ..+..+ ...+...|++++|...++++.
T Consensus 93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777888888888888888888888888764 3433 444444 333666777777777777776
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH
Q 037911 268 EEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD-IV 346 (609)
Q Consensus 268 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ 346 (609)
+.. +.+..++..+..+|.+.|++++|++.|+++.+.... +..+|..+...+...|++++|...|+++.+. .|+ ..
T Consensus 171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 246 (450)
T 2y4t_A 171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKR 246 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHH
Confidence 653 335666777777777777777777777777654322 5666777777777777777777777777654 232 23
Q ss_pred HHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCccC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 037911 347 SYNTL------------IFAYCKEGKMQESKSLLYEMMGNGIYPD-----TFTCQIIVQGYGKEGRLLSALNLVVELQRF 409 (609)
Q Consensus 347 ~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (609)
.+..+ ...+.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++++|+..++++.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33322 45555666666666666665543 222 234555555555556666666655555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037911 410 GVSISRDIYDYLIVALCQDNRPFAATSLLERIGQ 443 (609)
Q Consensus 410 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
. +.+...+..+..+|...|++++|...+++...
T Consensus 325 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 325 E-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2 22445555555555555555555555555544
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=6.3e-22 Score=200.78 Aligned_cols=315 Identities=14% Similarity=0.026 Sum_probs=218.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 190 FKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
...+.++.... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33344444332 5567788888999999999999999999987752 456888888999999999999999999998887
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCH---hhHHHH------------HHHHHhcCCHHHHHHHHH
Q 037911 270 GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDL---VTYTTL------------MNGLCKEGKVREAHQLFH 334 (609)
Q Consensus 270 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l------------l~~~~~~~~~~~a~~~~~ 334 (609)
+ +.+..++..+..+|.+.|++++|.+.|+++.+.+.. +. ..+..+ ...+...|++++|...|+
T Consensus 90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5 335778888999999999999999999999876432 33 455544 344788889999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 037911 335 RMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSIS 414 (609)
Q Consensus 335 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 414 (609)
++.+.. +.+...+..+..+|.+.|++++|..+|+++.+.. +.+..++..+...|...|++++|+..++++.+... .+
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 244 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DH 244 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-Ch
Confidence 888753 3467788888888889999999999998887652 33677888888888889999999998888877642 23
Q ss_pred HHHHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 415 RDIYDYL------------IVALCQDNRPFAATSLLERIGQDGYVPS----LEIYNELMESLCKCDSVADALLLKDEMVD 478 (609)
Q Consensus 415 ~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 478 (609)
...+..+ ...+...|++++|...++++..... .+ ...+..+...+.+.|++++|+..++++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333333 5555666666666666666644221 11 23455556666666666666666666554
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 037911 479 RNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 479 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (609)
.. +.+..+|..+..+|...|++++|...++++.+
T Consensus 324 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 324 ME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 32 12455566666666666666666666666654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2.6e-21 Score=201.01 Aligned_cols=427 Identities=13% Similarity=0.036 Sum_probs=318.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhcc
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCT 173 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (609)
...+......|+++.|+..|+.+... .+.++.+|..++.++...|++++|++.++++++. .|.+...+..+..
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~-- 101 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEI---KPDHSKALLRRAS-- 101 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH--
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHH--
Confidence 33445566779999999999999974 2457899999999999999999999999999987 4667888888888
Q ss_pred ccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC------CCCCHHHHHHHH
Q 037911 174 EDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIG------ICPNTHTFNILT 247 (609)
Q Consensus 174 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~l~ 247 (609)
.|...|++++|+..|+ ..... |+. .+..+..+...+...+|...++++.... ..|+.. .+
T Consensus 102 -----~~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~ 167 (537)
T 3fp2_A 102 -----ANESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SL 167 (537)
T ss_dssp -----HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HH
T ss_pred -----HHHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HH
Confidence 8999999999999997 44322 222 2223445556666788999999986531 223333 33
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHh--------cCCHhHHHHHHHHHhhCCccCC-------Hh
Q 037911 248 HVFCKNGDVDKVNGFLEKIEEEGFDPDLV-TYNTLISSYCK--------KGRLNDAFYLYRIMYRRNVLPD-------LV 311 (609)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~p~-------~~ 311 (609)
..+....+.+.+...+...... .+... ....+...+.. .|++++|+.+|+++.+.... + ..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~ 244 (537)
T 3fp2_A 168 ASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAAL 244 (537)
T ss_dssp HHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHH
Confidence 4455566666655554443322 22221 22222222222 25789999999999876433 2 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 037911 312 TYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYG 391 (609)
Q Consensus 312 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (609)
++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 4667778888999999999999999886 5667888888999999999999999999988763 336788999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037911 392 KEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALL 471 (609)
Q Consensus 392 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (609)
..|++++|+..++++.+... .+...+..+..++...|++++|...+++..... +.+...+..+...+...|++++|..
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999988753 356788889999999999999999999986654 4567788899999999999999999
Q ss_pred HHHHHHHCC-----CCCCHHHHHHHHHHHhcC----------CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 037911 472 LKDEMVDRN-----IKPSLSTYRALICCFCGI----------GRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDV 536 (609)
Q Consensus 472 ~~~~~~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 536 (609)
.|+++.+.. .......+..+..++... |++++|...++++.+.. +.+...+..+...|.+.|++
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 999987542 111223344455667777 99999999999998753 45678899999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 037911 537 NKAEALLGFFAKKF 550 (609)
Q Consensus 537 ~~A~~~~~~~~~~~ 550 (609)
++|.+.|+++.+..
T Consensus 479 ~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 479 DEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999773
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.1e-18 Score=171.05 Aligned_cols=329 Identities=11% Similarity=0.038 Sum_probs=185.0
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
++..+..++..+...|++++|...|+++++. .|.+...+..+.. .|...|++++|+..|+++.+.. +.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~~~~~~-~~~ 70 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRAT-------VFLAMGKSKAALPDLTKVIALK-MDF 70 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhC-CCc
Confidence 3556777788888888888888888888765 4456667777776 7888888888888888887754 446
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC----CHHHHHHH------------HHHHHHcCChHHHHHHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICP----NTHTFNIL------------THVFCKNGDVDKVNGFLEKIEE 268 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~ 268 (609)
...|..+...+...|++++|...|+++.+. .| +...+..+ ...+...|++++|.+.++++.+
T Consensus 71 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 148 (359)
T 3ieg_A 71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677777888888888888888888888764 34 33333333 3445555555555555555554
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037911 269 EGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSY 348 (609)
Q Consensus 269 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 348 (609)
.. +.+...+..+...+...|++++|+..++++.+.... +..++..+...+...|++++|...+++..+.. +.+...+
T Consensus 149 ~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 225 (359)
T 3ieg_A 149 VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCF 225 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHH
Confidence 42 223444555555555555555555555555544322 44445555555555555555555555554431 1111111
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH
Q 037911 349 NTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISR----DIYDYLIVA 424 (609)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~ 424 (609)
..+... . .......+...+.+.|++++|+..++++.+.... +. ..+..+..+
T Consensus 226 ~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 226 AHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHH
Confidence 110000 0 0000112234455555666666655555554322 22 123344555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 425 LCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCF 495 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 495 (609)
+...|++++|...+++..... +.+..++..+...+.+.|++++|...|+++.+... -+...+..+..+.
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQ 350 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 666666666666666654432 33556666666666666777777777766665431 2234444444443
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=2.8e-17 Score=168.06 Aligned_cols=364 Identities=12% Similarity=0.017 Sum_probs=207.4
Q ss_pred HHHHHHHhhhcCCCCCCHHhHHHHHHHHHh----CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHH--
Q 037911 109 ALTFFNWVKNDLEIKPTSSNYCLIVHILAW----NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVK-- 182 (609)
Q Consensus 109 A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-- 182 (609)
++..+..+.. ..++.++..+...|.. .+++++|...|+.+.+. .+...+..+.. .|..
T Consensus 26 ~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~-------~y~~g~ 89 (490)
T 2xm6_A 26 NLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----GYTPAEYVLGL-------RYMNGE 89 (490)
T ss_dssp CHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHH-------HHHHTS
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHH-------HHHcCC
Confidence 3455554443 3466777777777776 67777777777777754 23445555555 5666
Q ss_pred --hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----
Q 037911 183 --VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK----LNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK---- 252 (609)
Q Consensus 183 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---- 252 (609)
.+++++|++.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..|...|..
T Consensus 90 g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 163 (490)
T 2xm6_A 90 GVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGV 163 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 677777777777777654 55566666666666 567777777777766643 45555666666665
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh----cC
Q 037911 253 NGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK----KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK----EG 324 (609)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~ 324 (609)
.++.++|.+.|++..+.| +...+..+...|.. .++.++|++.|++..+.| +...+..+...+.. .+
T Consensus 164 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 566666766666666553 45556666666665 566666666666666543 34455555555554 55
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcc-----CC
Q 037911 325 KVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCK----EGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKE-----GR 395 (609)
Q Consensus 325 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~ 395 (609)
++++|..+|++..+.| +...+..+...|.. .++.++|..+|++..+.| +...+..+...|... ++
T Consensus 238 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 6666666666665543 33444445555554 555666666665555442 233444444444443 45
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 037911 396 LLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCD---SVADALLL 472 (609)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~ 472 (609)
+++|+..+++..+.+ +...+..+...|...| ++++|.++
T Consensus 312 ~~~A~~~~~~a~~~~--------------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 312 REQAISWYTKSAEQG--------------------------------------DATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--------------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 555555555544432 2233344444444333 45555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc----CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHH
Q 037911 473 KDEMVDRNIKPSLSTYRALICCFCG----IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM----EKDVNKAEALLG 544 (609)
Q Consensus 473 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 544 (609)
|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..|...|.. .++.++|...|+
T Consensus 354 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 354 FRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 55555542 34455555555554 455555555555555543 34455555555555 555666666665
Q ss_pred HHHHcC
Q 037911 545 FFAKKF 550 (609)
Q Consensus 545 ~~~~~~ 550 (609)
+..+.+
T Consensus 428 ~A~~~~ 433 (490)
T 2xm6_A 428 TASTND 433 (490)
T ss_dssp HHHHHH
T ss_pred HHHHCC
Confidence 555543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.5e-18 Score=168.35 Aligned_cols=322 Identities=9% Similarity=0.034 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHH
Q 037911 240 THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNG 319 (609)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 319 (609)
...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|+..|+++.+.... +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 4556666777777777777777777777653 234666777777777777777777777777765432 45666777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCC
Q 037911 320 LCKEGKVREAHQLFHRMVHRGLSP----DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGR 395 (609)
Q Consensus 320 ~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (609)
+...|++++|...|+++.+. .| +...+..+...+. ...+..+...+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 77777777777777777664 33 2222322211000 0112223455566666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 396 LLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDE 475 (609)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
+++|+..++++.+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666666554 2355666666666666676666666666665543 44566667777777777777777777777
Q ss_pred HHHCCCCCCHHHHH------------HHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHH
Q 037911 476 MVDRNIKPSLSTYR------------ALICCFCGIGRSGEAVSLMDEMLESGMLPDS----QICRVLINGYCMEKDVNKA 539 (609)
Q Consensus 476 ~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A 539 (609)
..+... .+...+. .+...+...|++++|...++++.+.. +.+. ..+..+..++.+.|++++|
T Consensus 214 a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 665432 2222222 22556778888888888888888643 2222 2345577888888899999
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 037911 540 EALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKY 595 (609)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 595 (609)
...++.+.+.. +.+...|..++.+|...|++++|.+.|+++++. .|+......
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~ 344 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIRE 344 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHH
Confidence 99888888763 335678888888888899999999999988844 566544333
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=7.1e-17 Score=165.08 Aligned_cols=344 Identities=13% Similarity=0.088 Sum_probs=216.5
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cC
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK----LNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK----NG 254 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g 254 (609)
.+++++|+..|++..+.| +..++..|...|.. .++.++|.+.|++..+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 455555555555555532 34445555555554 555555555555554432 33444444444444 44
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 037911 255 DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFH 334 (609)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 334 (609)
++++|...|++..+.| +...+..+...|.... ...++.++|.++|+
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~-------------------------------g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGD-------------------------------GVTRDYVMAREWYS 175 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS-------------------------------SSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC-------------------------------CCCCCHHHHHHHHH
Confidence 4555555555444432 2333444444443300 00445555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----cCCHHHHHHHHHHH
Q 037911 335 RMVHRGLSPDIVSYNTLIFAYCK----EGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGK----EGRLLSALNLVVEL 406 (609)
Q Consensus 335 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~ 406 (609)
+..+.| +...+..+...|.. .++.++|..+|++..+.| +...+..+...|.. .+++++|+.+|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 555443 34444445555544 455555555555555443 33444444444443 45566666666655
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 037911 407 QRFGVSISRDIYDYLIVALCQ----DNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKC-----DSVADALLLKDEMV 477 (609)
Q Consensus 407 ~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~ 477 (609)
.+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...|... +++++|..+|++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 5543 33444455555555 566677777777665543 455666677777766 89999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhcCC---CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcC
Q 037911 478 DRNIKPSLSTYRALICCFCGIG---RSGEAVSLMDEMLESGMLPDSQICRVLINGYCM----EKDVNKAEALLGFFAKKF 550 (609)
Q Consensus 478 ~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 550 (609)
+.+ +...+..+...|...| +.++|+++|++..+.+ +...+..|...|.. .+++++|...|++..+.+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 875 5677788888887766 8899999999999864 67888899999998 899999999999999864
Q ss_pred CCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 037911 551 QIYDTESYNAVFNMFAE----DGDLSKLMELQKRFLRLGFA 587 (609)
Q Consensus 551 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~ 587 (609)
+...+..+...|.. .+++++|.++|++..+.+..
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 57788899999998 89999999999999988644
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=7.3e-17 Score=166.73 Aligned_cols=418 Identities=10% Similarity=0.027 Sum_probs=305.8
Q ss_pred HHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037911 149 LCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVY 228 (609)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 228 (609)
+++.++. .|.+...+..++. +.+.|++++|..+|+++++.. +.+...|..++..+.+.|++++|..+|
T Consensus 2 le~al~~---~P~~~~~w~~l~~--------~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~ 69 (530)
T 2ooe_A 2 AEKKLEE---NPYDLDAWSILIR--------EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLF 69 (530)
T ss_dssp HHHHHHH---CTTCHHHHHHHHH--------HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHhhh---CCCCHHHHHHHHH--------HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4455544 5678888888885 478999999999999999864 678889999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHH-HHcCChHHHHH----HHHHHHHc-CCCC-CHHhHHHHHHHHHh---------cCCHh
Q 037911 229 EEMGRIGICPNTHTFNILTHVF-CKNGDVDKVNG----FLEKIEEE-GFDP-DLVTYNTLISSYCK---------KGRLN 292 (609)
Q Consensus 229 ~~m~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~ 292 (609)
++.... .|+...|...+... ...|+.++|.+ +|+..... |..| +...|...+..... .|+++
T Consensus 70 ~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 147 (530)
T 2ooe_A 70 QRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRIT 147 (530)
T ss_dssp HHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHH
T ss_pred HHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHH
Confidence 999885 47887777776533 35677776665 67766543 4443 46677777776654 78999
Q ss_pred HHHHHHHHHhhCCccCCHhhHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCCC------
Q 037911 293 DAFYLYRIMYRRNVLPDLVTYTTLMNGL-------------CKEGKVREAHQLFHRMV------HRG---LSPD------ 344 (609)
Q Consensus 293 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~m~------~~g---~~p~------ 344 (609)
.|..+|++..+....+....|....... .+.++++.|..++.++. +.. +.|+
T Consensus 148 ~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 148 AVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 9999999999842111123333222211 12355777877777632 221 2443
Q ss_pred --HHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHCCCccCHHHHHHHHHHHHc-------cCCHH-------HHH
Q 037911 345 --IVSYNTLIFAYCKE----GKM----QESKSLLYEMMGNGIYPDTFTCQIIVQGYGK-------EGRLL-------SAL 400 (609)
Q Consensus 345 --~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~ 400 (609)
...|...+...... ++. +.+..+|++.+.. .+.+...|..++..+.+ .|+++ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 24555554333222 232 4777889998875 23467788888888775 78877 899
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 401 NLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPS-LEIYNELMESLCKCDSVADALLLKDEMVDR 479 (609)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 479 (609)
.++++..+.-.+-+...+..++..+.+.|++++|..+++++.... +.+ ...|...+..+.+.|++++|.++|++..+.
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999873234468889999999999999999999999998753 223 358999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHH-HHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC--h
Q 037911 480 NIKPSLSTYRALIC-CFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ-IYD--T 555 (609)
Q Consensus 480 ~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~ 555 (609)
.. .+...|..... .+...|+.++|..+|+++++.. +-+...|..++..+.+.|+.++|..+|++...... .|+ .
T Consensus 386 ~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp TT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred cC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 32 22333332222 2346899999999999998753 34678899999999999999999999999997642 221 2
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 556 ESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
..|..++......|+.+.+.++++++.+.
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 37888888888999999999999999865
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=5.3e-18 Score=164.00 Aligned_cols=287 Identities=11% Similarity=-0.012 Sum_probs=194.3
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
+.++..+..++..+...|++++|.++++++++. .|.+...+..++. .+...|++++|+..++++.+.. +
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~-------~~~~~~~~~~A~~~~~~~~~~~-~ 87 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK---DPFHASCLPVHIG-------TLVELNKANELFYLSHKLVDLY-P 87 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTTTHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCChhhHHHHHH-------HHHHhhhHHHHHHHHHHHHHhC-c
Confidence 445566777777777778888888888877765 3344455555555 6777788888888888777754 4
Q ss_pred CCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 037911 203 PSIVSCNFLLNGLLKLN-CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTL 281 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 281 (609)
.+...|..+...+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 165 (330)
T 3hym_B 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYI 165 (330)
T ss_dssp TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence 45667777777777777 7777888887777643 3346667777777777788888888777777663 2234556667
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHH
Q 037911 282 ISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG--------LSPDIVSYNTLIF 353 (609)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~ 353 (609)
...+...|++++|.+.+++..+.... +...+..+...+...|++++|...++++.+.. .+.+..++..+..
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 77777777777777777777765433 56667777777777777777777777776531 1223456677777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 354 AYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVAL 425 (609)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 425 (609)
++...|++++|...+++..+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 7777777777777777776542 2245666677777777777777777777766654 22455555555555
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=2e-16 Score=163.52 Aligned_cols=410 Identities=11% Similarity=0.029 Sum_probs=280.4
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
+.+..+|..++. +.+.|++++|..+|+.+++. .|.+..++...+. .+.+.|++++|..+|+++++..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~---~P~~~~~w~~~~~-------~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ---FPSSGRFWKLYIE-------AEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHTTTC--
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHhcCCHHHHHHHHHHHHhcC--
Confidence 346777777777 36677888888888887754 5667777777777 6777788888888888877753
Q ss_pred CCHHHHHHHHHHH-HhcCChHHHHH----HHHHHhh-CCCCC-CHHHHHHHHHHHHH---------cCChHHHHHHHHHH
Q 037911 203 PSIVSCNFLLNGL-LKLNCIDQCWQ----VYEEMGR-IGICP-NTHTFNILTHVFCK---------NGDVDKVNGFLEKI 266 (609)
Q Consensus 203 ~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~m~~-~~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~ 266 (609)
|++..|...+... ...|+.+.|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5777776666433 34566665554 6665543 24333 34566666655443 57778888888877
Q ss_pred HHcCCCCCHHhHHHHHHHH-------------HhcCCHhHHHHHHHHHh------hCC---ccCC--------HhhHHHH
Q 037911 267 EEEGFDPDLVTYNTLISSY-------------CKKGRLNDAFYLYRIMY------RRN---VLPD--------LVTYTTL 316 (609)
Q Consensus 267 ~~~~~~~~~~~~~~li~~~-------------~~~g~~~~a~~~~~~~~------~~~---~~p~--------~~~~~~l 316 (609)
.+.........|....... ...++++.|..+++++. +.. +.|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 7631111122333222210 12345777777776632 221 2333 2345554
Q ss_pred HHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHC
Q 037911 317 MNGLCKE----GKV----REAHQLFHRMVHRGLSPDIVSYNTLIFAYCK-------EGKMQ-------ESKSLLYEMMGN 374 (609)
Q Consensus 317 l~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~ 374 (609)
+...... ++. +.+..+|++.... .+.+...|..++..+.+ .|+++ +|..++++.++.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4332222 232 4777889888875 23467788888777765 68987 899999999863
Q ss_pred CCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 037911 375 GIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSIS-RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIY 453 (609)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 453 (609)
-.+.+...|..++..+.+.|++++|..+|+++.+... .+ ...|...+..+.+.|+.++|..+|++..... +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 2233578899999999999999999999999998642 23 3578888888889999999999999997653 2233333
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC-CCCC--HHHHHHHHHH
Q 037911 454 NELMES-LCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG-MLPD--SQICRVLING 529 (609)
Q Consensus 454 ~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~ 529 (609)
...+.. +...|+.++|..+|+..++.. +.+...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 332222 335899999999999988754 2357889999999999999999999999999863 2332 4578888888
Q ss_pred HHccCCHHHHHHHHHHHHHc
Q 037911 530 YCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~ 549 (609)
....|+.+.+.++.+++.+.
T Consensus 473 e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999998876
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=5.6e-18 Score=163.82 Aligned_cols=268 Identities=10% Similarity=-0.006 Sum_probs=120.0
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 275 LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFA 354 (609)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 354 (609)
...+..+...+...|++++|+++|+++.+.... +...+..++..+...|++++|..+++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 334444444444445555555555554443222 23334444444445555555555555544431 1233444444444
Q ss_pred HHHcC-ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 037911 355 YCKEG-KMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFA 433 (609)
Q Consensus 355 ~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 433 (609)
+...| ++++|...++++.+.. +.+...+..+...+...|++++|+..++++.+.... +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 55555 4555555555544432 112344444444555555555555555544443211 22333334444444444444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHhcCCCHhHHH
Q 037911 434 ATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRN--------IKPSLSTYRALICCFCGIGRSGEAV 505 (609)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~ 505 (609)
|...+++..... +.+...+..+...+...|++++|...++++.+.. ...+..++..+..++...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 444444443322 2234444445555555555555555555444321 0122334444444555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 506 SLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAK 548 (609)
Q Consensus 506 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (609)
..++++.+.. +.+...+..+...+.+.|++++|.+.++++.+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 5555544432 22334444445555555555555555554443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=4.2e-18 Score=167.53 Aligned_cols=257 Identities=12% Similarity=0.038 Sum_probs=150.4
Q ss_pred CCChhHHHH-HHHHhhhcCCCCC--CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhH
Q 037911 103 QSDSVSALT-FFNWVKNDLEIKP--TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWA 179 (609)
Q Consensus 103 ~~~~~~A~~-~f~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (609)
.++++.|+. .|+.+.......| +...+..++..+...|++++|...++++++. .|.+...+..+.. .
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~-------~ 107 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ---DPKHMEAWQYLGT-------T 107 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHH-------H
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------H
Confidence 357777777 7776664322222 3566778888888888888888888888865 4556677777777 7
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH--------------
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNI-------------- 245 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------------- 245 (609)
|...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------
T ss_pred HHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHH
Confidence 888888888888888887765 4567778888888888888888888888877643 122222211
Q ss_pred -HHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc
Q 037911 246 -LTHVFCKNGDVDKVNGFLEKIEEEGFDP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE 323 (609)
Q Consensus 246 -l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 323 (609)
.+..+...|++++|...++++.+..... +..++..+...+...|++++|+..|+++.+.... +..+|..+...+...
T Consensus 186 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANG 264 (368)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHc
Confidence 1222225555666666666555542111 3455555555555556666666655555544222 344555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 324 GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...++++.+
T Consensus 265 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555431 22344555555555555555555555555543
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=9.1e-18 Score=165.12 Aligned_cols=288 Identities=13% Similarity=0.018 Sum_probs=135.6
Q ss_pred HhCCHHHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChH
Q 037911 182 KVGLIRESFK-TFRKTLDVGFQ-P--SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVD 257 (609)
Q Consensus 182 ~~g~~~~A~~-~~~~~~~~~~~-~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (609)
..|++++|+. .|++..+.... | +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3455566665 55554432210 1 23345556666666666666666666666542 334556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHH---------------HHHHHHh
Q 037911 258 KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTT---------------LMNGLCK 322 (609)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~---------------ll~~~~~ 322 (609)
+|...++++.+.. +.+..++..+...+...|++++|++.++++.+.... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 6666666666553 234556666666666666666666666666654322 1111111 1111124
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHH
Q 037911 323 EGKVREAHQLFHRMVHRGLSP-DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALN 401 (609)
Q Consensus 323 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 401 (609)
.|++++|...|+++.+..... +..++..+...+...|++++|...++++.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------------------- 244 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL----------------------------- 244 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------------
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------
Confidence 444444444444444431110 23444444444444444444444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037911 402 LVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNI 481 (609)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 481 (609)
+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...|.+.|++++|...|+++.+...
T Consensus 245 ------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 245 ------SVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp ------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ------HhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 332 1233344444444444444444444444443321 22344455555555555555555555555443211
Q ss_pred C----------CCHHHHHHHHHHHhcCCCHhHHHHHHH
Q 037911 482 K----------PSLSTYRALICCFCGIGRSGEAVSLMD 509 (609)
Q Consensus 482 ~----------p~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (609)
. ....+|..+..++...|+.++|..+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 0 013455555555555555555555544
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=6.2e-15 Score=157.74 Aligned_cols=337 Identities=13% Similarity=0.145 Sum_probs=236.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 6778888888888888753 12222233322 567888888888764 346777788888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|.+.|.+. -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+. +
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 88888653 367778888888888888888888888777654 23333445888888888887544332 2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037911 339 RGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIY 418 (609)
Q Consensus 339 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (609)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|++.+++. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 345566777888888888888888888774 36888888888888888888888875 356788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 037911 419 DYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG- 497 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~- 497 (609)
..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+... .-....|+-+...|++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 8888888888887777765543 23456667788888889999999999988776543 2334456555555554
Q ss_pred -CCCHhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHccCCHHHHHHHH-------------HHHHHcCCCCChhc
Q 037911 498 -IGRSGEAVSLMDEMLESGMLP------DSQICRVLINGYCMEKDVNKAEALL-------------GFFAKKFQIYDTES 557 (609)
Q Consensus 498 -~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~ 557 (609)
-++..++.++|..-. ++++ +...|..++..|.+.|+++.|.... +..... ..|+..
T Consensus 1328 ~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~el 1403 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVEL 1403 (1630)
T ss_pred CHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHH
Confidence 456666666666543 2332 4566888888888889988887322 222211 446667
Q ss_pred HHHHHHHHHhcC
Q 037911 558 YNAVFNMFAEDG 569 (609)
Q Consensus 558 ~~~l~~~~~~~g 569 (609)
|...+.-|...+
T Consensus 1404 yykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1404 YYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHhhC
Confidence 777777666555
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=1.8e-14 Score=154.21 Aligned_cols=400 Identities=13% Similarity=0.124 Sum_probs=291.7
Q ss_pred HHHHHhhh-cCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHH
Q 037911 111 TFFNWVKN-DLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRES 189 (609)
Q Consensus 111 ~~f~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A 189 (609)
.+.+|... ...-..+++--...++.|...|.+.+|++++++++-.......+...-+.++. ...+. +..+.
T Consensus 969 ~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~-------tAIka-D~~Rv 1040 (1630)
T 1xi4_A 969 PLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLIL-------TAIKA-DRTRV 1040 (1630)
T ss_pred HHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHH-------HHHHh-ChhhH
Confidence 45555432 11223456666677888889999999999999988442212234444555555 34444 44555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 190 FKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
.+..++.... ...-+...+...|++++|..+|++.. -.....+.++. ..|++++|.++.++..
T Consensus 1041 ~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-- 1103 (1630)
T 1xi4_A 1041 MEYINRLDNY-------DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-- 1103 (1630)
T ss_pred HHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--
Confidence 5555544321 13336778888999999999999963 12222333332 7788999999998663
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037911 270 GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYN 349 (609)
Q Consensus 270 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 349 (609)
+..+|..+..++...|++++|++.|.+. -|...|..++..+.+.|++++|.+++....+.. ++....+
T Consensus 1104 ----~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt 1171 (1630)
T 1xi4_A 1104 ----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVET 1171 (1630)
T ss_pred ----CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccH
Confidence 5778999999999999999999999664 277888899999999999999999999887763 3443444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037911 350 TLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDN 429 (609)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 429 (609)
.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+..++++.|
T Consensus 1172 ~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1172 ELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG 1235 (1630)
T ss_pred HHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhC
Confidence 5899999999988644432 2 346677888999999999999999999885 47999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHH
Q 037911 430 RPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMD 509 (609)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (609)
++++|.+.+++. .+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++
T Consensus 1236 e~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1236 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred CHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999876 35689999999999999999998876543 2456777899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHcCC----CCChhcHHHHHHHHHhcCCHHHHH
Q 037911 510 EMLESGMLPDSQICRVLINGYCME--KDVNKAEALLGFFAKKFQ----IYDTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 510 ~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
..+... +-....|.-|...|++- ++..++.++|..-..... .-+...|..++-.|.+.|+++.|.
T Consensus 1305 ~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1305 AALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 988543 23344566666666653 455556665543221100 123567999999999999999998
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=3.2e-17 Score=161.07 Aligned_cols=265 Identities=9% Similarity=-0.004 Sum_probs=195.2
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...|..++..+.+.|++++|...|+++++. .|.+...+..+.. .|...|++++|+..|+++.+.. +.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~-------~~~~~g~~~~A~~~~~~al~~~-p~~ 132 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ---DPGDAEAWQFLGI-------TQAENENEQAAIVALQRCLELQ-PNN 132 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCCHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 5566889999999999999999999999976 4567888888888 8999999999999999998865 556
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN-----------THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFD- 272 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~- 272 (609)
..+|..+..++...|++++|...|+++.+.. |+ ...+..+...+...|++++|...++++.+....
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 210 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence 8889999999999999999999999987642 32 122334567778888888888888888876422
Q ss_pred CCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037911 273 PDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLI 352 (609)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 352 (609)
.+..++..+...|...|++++|++.|++..+.... +..+|..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 288 (365)
T 4eqf_A 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLG 288 (365)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence 15777888888888888888888888888776433 56778888888888888888888888887752 23467777888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCc-----------cCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 353 FAYCKEGKMQESKSLLYEMMGNGIY-----------PDTFTCQIIVQGYGKEGRLLSALNLVV 404 (609)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 404 (609)
.+|.+.|++++|...|+++.+.... .+...|..+..++...|+.+.+..+..
T Consensus 289 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 289 ISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888888888888877653110 024456666666666666666555543
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.2e-17 Score=160.29 Aligned_cols=226 Identities=13% Similarity=0.092 Sum_probs=47.9
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhcccc
Q 037911 96 SRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTED 175 (609)
Q Consensus 96 ~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (609)
+.+|...-++.+.|.+|++.. +.+.+|..++.++.+.|++++|++.|.+. ++...|..++.
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~---- 69 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQ---- 69 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHH----
Confidence 344444444555555555432 22335555555555555555555554321 12334444444
Q ss_pred chhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 037911 176 CNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD 255 (609)
Q Consensus 176 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 255 (609)
.+...|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|+
T Consensus 70 ---~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~ 137 (449)
T 1b89_A 70 ---AANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM 137 (449)
T ss_dssp --------------------------------------------CHHHHTTTTT-------CC----------------C
T ss_pred ---HHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCC
Confidence 444455555555544444432 2333444445555555555555444442 1344444445555555555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 256 VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHR 335 (609)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 335 (609)
+++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|......
T Consensus 138 yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 138 YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp TTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 55555555433 23444444455555555554444444 1344444444444444544444332222
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 336 MVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 336 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
+ ...+.....++..|.+.|.+++|..+++..+
T Consensus 203 L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 203 I-----VVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp T-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred H-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1 1122222334444444444444444444444
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.2e-17 Score=160.31 Aligned_cols=283 Identities=12% Similarity=0.103 Sum_probs=133.4
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVN 260 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 260 (609)
-+.|++++|.+.++++. +..+|..|+.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 37788999999999883 234899999999999999999999965 367779999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037911 261 GFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG 340 (609)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 340 (609)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 4567889999999999999999988874 267789999999999999999999999977
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 341 LSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDY 420 (609)
Q Consensus 341 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 420 (609)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 37899999999999999999999988 2789999999999999999999655443 2345555667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHH
Q 037911 421 LIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKC--DSVADALLLKDEMVDRNIKP------SLSTYRALI 492 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~li 492 (609)
++..|.+.|+++++..+++...... +-....|+.+.-+|++- +++.+.++.|..- .++.| +...|..+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHH
Confidence 8889999999999999999986555 56778888887777764 3444455444321 12222 345688888
Q ss_pred HHHhcCCCHhHHHHH
Q 037911 493 CCFCGIGRSGEAVSL 507 (609)
Q Consensus 493 ~~~~~~g~~~~A~~~ 507 (609)
..|...++++.|...
T Consensus 290 ~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHhhchHHHHHHH
Confidence 889999999988774
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.8e-17 Score=162.89 Aligned_cols=265 Identities=9% Similarity=-0.071 Sum_probs=168.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 037911 312 TYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYG 391 (609)
Q Consensus 312 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (609)
.+..+...+.+.|++++|..+|+++.+.. +.+...+..+..++...|++++|...|+++.+.. +.+..++..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34555555555555555555555555432 2244455555555555555555555555555432 123445555555555
Q ss_pred ccCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 037911 392 KEGRLLSALNLVVELQRFGVS---------ISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYV-PSLEIYNELMESLC 461 (609)
Q Consensus 392 ~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 461 (609)
..|++++|+..++++.+.... .....+..+...+...|++++|...++++...... .+..++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 555555555555555443210 01223344566777777777888877777554321 26778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 037911 462 KCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEA 541 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 541 (609)
+.|++++|+..|+++.+... .+..+|..+..+|...|++++|+..++++.+.. +.+..++..+..+|.+.|++++|..
T Consensus 225 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 88889999888888887542 457788888888888999999999998888753 3457788888899999999999999
Q ss_pred HHHHHHHcCCC-----------CChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 542 LLGFFAKKFQI-----------YDTESYNAVFNMFAEDGDLSKLMELQKR 580 (609)
Q Consensus 542 ~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (609)
.++++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99888765211 1256788999999999999888877665
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.2e-16 Score=154.27 Aligned_cols=265 Identities=9% Similarity=-0.047 Sum_probs=169.1
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...+..++..+...|++++|..+++++++. .|.+...+..+.. .+...|++++|+..|+++.+.. +.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~a~~~~-~~~ 88 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA---APEREEAWRSLGL-------TQAENEKDGLAIIALNHARMLD-PKD 88 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhcC-cCC
Confidence 3455677777788888888888888888765 3456666666666 7778888888888888887754 456
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHc
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNIL--------------TH-VFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~ 269 (609)
..++..+...+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 167 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777778888888888888888777642 1222222222 11 255556677777777776665
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037911 270 GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYN 349 (609)
Q Consensus 270 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 349 (609)
. +.+...+..+...+...|++++|++.++++.+.... +..++..+...+...|++++|...++++.+.. +.+...+.
T Consensus 168 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 244 (327)
T 3cv0_A 168 N-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMY 244 (327)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 3 225566666667777777777777777766654332 45566666666667777777777776666542 22455666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCcc-----------CHHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 350 TLIFAYCKEGKMQESKSLLYEMMGNGIYP-----------DTFTCQIIVQGYGKEGRLLSALNLVV 404 (609)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~ 404 (609)
.+...+...|++++|...++++.+..... +...+..+...+.+.|++++|..+++
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 66666666677777777666665432110 24556666666666666666666554
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.3e-15 Score=155.32 Aligned_cols=374 Identities=11% Similarity=0.015 Sum_probs=220.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI--------GICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE----- 269 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 269 (609)
.....||.|..++...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556777777777778888887777765431 11223466777777788888888887777766542
Q ss_pred C-CC-CCHHhHHHHHHHHHhc--CCHhHHHHHHHHHhhCCccCCHhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCC
Q 037911 270 G-FD-PDLVTYNTLISSYCKK--GRLNDAFYLYRIMYRRNVLPDLVTYTTLMNG---LCKEGKVREAHQLFHRMVHRGLS 342 (609)
Q Consensus 270 ~-~~-~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~g~~ 342 (609)
+ .. ....++..+..++... +++++|+..|++..+..+. +...+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 0 01 1234555555444443 4577888888877765432 34444444433 334566677777777776642 2
Q ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037911 343 PDIVSYNTLIFAYCK----EGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIY 418 (609)
Q Consensus 343 p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (609)
.+...+..+...+.. .|++++|..++++..... +.+...+..+...|...|++++|+..+++..+..+ -+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHH
Confidence 234445444444433 356677777777776543 23556677777778888888888888887776642 245555
Q ss_pred HHHHHHHHhc-------------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 419 DYLIVALCQD-------------------NRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDR 479 (609)
Q Consensus 419 ~~ll~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 479 (609)
..+..+|... +..+.|...+++..... +.+...+..+...+...|++++|+..|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 5554444321 22456667777765443 345567888899999999999999999999886
Q ss_pred CCCCCHH--HHHHHHH-HHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 037911 480 NIKPSLS--TYRALIC-CFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTE 556 (609)
Q Consensus 480 ~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 556 (609)
...+... .+..+.. .+...|+.++|+..|+++++. .|+...... ....+.++++...+.. +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHH
Confidence 5433221 2222322 345789999999999999864 455433222 2344556666666553 45678
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhH
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFLRLG-FAPNNLTC 593 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~ 593 (609)
+|..+..+|...|++++|++.|++.++.| ..|+..+|
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999999999764 34554443
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.6e-15 Score=154.45 Aligned_cols=390 Identities=10% Similarity=-0.075 Sum_probs=236.3
Q ss_pred CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhC------CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHH
Q 037911 122 IKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVK------DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRK 195 (609)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~ 195 (609)
.......|+.++.++...|++++|++.|+++++... ..+....+|..+.. .|...|++++|+..+++
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~-------~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAW-------VYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHH-------HHHHTTCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHH-------HHHHcCChHHHHHHHHH
Confidence 344567899999999999999999999999876421 13445566777777 89999999999999998
Q ss_pred HHhC-----C--CCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHHcCChHHHHHHH
Q 037911 196 TLDV-----G--FQPSIVSCNFLLNGLLKL--NCIDQCWQVYEEMGRIGICPNTHTFNILTHV---FCKNGDVDKVNGFL 263 (609)
Q Consensus 196 ~~~~-----~--~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~ 263 (609)
+.+. + ......++..+..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+
T Consensus 120 a~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198 (472)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHH
T ss_pred HHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 8752 1 122356676666666554 56899999999988743 2334555555444 34567888899999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 264 EKIEEEGFDPDLVTYNTLISSYCK----KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 264 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
++..+.. +.+..++..+...+.. .|++++|.+.+++....... +..++..+...+...|++++|...+++..+.
T Consensus 199 ~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 199 RQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 8888764 3355566665555544 46788999999988876543 6778888999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037911 340 GLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYD 419 (609)
Q Consensus 340 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 419 (609)
. +-+..++..+..+|...+....+.. ...........+.++.|+..+++..+.+ +.+...+.
T Consensus 277 ~-p~~~~~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 277 I-PNNAYLHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp S-TTCHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 2 2345666666655543211100000 0000000111123456666666666554 22344566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 037911 420 YLIVALCQDNRPFAATSLLERIGQDGYVPSL--EIYNELME-SLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFC 496 (609)
Q Consensus 420 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 496 (609)
.+...+...|++++|...+++.......+.. ..+..+.. .....|++++|+..|++..+.. |+.......
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~~----- 411 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEKM----- 411 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHHH-----
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHH-----
Confidence 6667777777777777777776554322221 11222222 2345678888888888877743 443322222
Q ss_pred cCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 037911 497 GIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ 551 (609)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 551 (609)
.+.+.++++..++.. +.+..+|..+..+|...|++++|.+.|++..+.+.
T Consensus 412 ----~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 412 ----KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp ----HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred ----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 233445555555433 44567788888888888888888888888886643
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=177.25 Aligned_cols=118 Identities=9% Similarity=0.089 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGR---IGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNT 280 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (609)
-..+||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 344666666666666666666666665542 35666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCC-HhHHHHHHHHHhhCCccCCHhhHHHHHHHHH
Q 037911 281 LISSYCKKGR-LNDAFYLYRIMYRRNVLPDLVTYTTLMNGLC 321 (609)
Q Consensus 281 li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 321 (609)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 6666666665 3556666666666666666666666665433
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=8e-16 Score=148.37 Aligned_cols=151 Identities=9% Similarity=-0.068 Sum_probs=82.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHH
Q 037911 428 DNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSL 507 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 507 (609)
.|++++|...++++.... +.+...+..+...+.+.|++++|...++++.+... .+..++..+...+...|++++|...
T Consensus 151 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444444443222 22445555555555555566666665555554321 2345555566666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----------ChhcHHHHHHHHHhcCCHHHHHH
Q 037911 508 MDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIY-----------DTESYNAVFNMFAEDGDLSKLME 576 (609)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~ 576 (609)
++++.+.. +.+...+..+...+...|++++|.+.++++.+..... +...|..+..++...|++++|.+
T Consensus 229 ~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 229 YNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 66655432 2345556666666666666666666666665542110 24556666666666666666666
Q ss_pred HHHHH
Q 037911 577 LQKRF 581 (609)
Q Consensus 577 ~~~~m 581 (609)
++++.
T Consensus 308 ~~~~~ 312 (327)
T 3cv0_A 308 TYAQN 312 (327)
T ss_dssp HTTCC
T ss_pred HHHHH
Confidence 66544
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.7e-15 Score=142.69 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHH
Q 037911 463 CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNK-AEA 541 (609)
Q Consensus 463 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~ 541 (609)
.|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++++.. +-+..++..++..+...|+.++ +.+
T Consensus 179 ~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~ 256 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNR 256 (291)
T ss_dssp TTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 355555555555555432 2344455555555555555555555555555432 2244445555555555555443 344
Q ss_pred HHHHHHHc
Q 037911 542 LLGFFAKK 549 (609)
Q Consensus 542 ~~~~~~~~ 549 (609)
+++++.+.
T Consensus 257 ~~~~~~~~ 264 (291)
T 3mkr_A 257 YLSQLKDA 264 (291)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555444
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=4.2e-18 Score=176.26 Aligned_cols=153 Identities=12% Similarity=0.201 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhH
Q 037911 237 CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEE---EGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTY 313 (609)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 313 (609)
..-..||++||++||+.|++++|.++|++|.+ .|+.||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34467999999999999999999999988764 588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC------HHHHHHH
Q 037911 314 TTLMNGLCKEGK-VREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPD------TFTCQII 386 (609)
Q Consensus 314 ~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l 386 (609)
+++|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.+..+. .+++..+++ ..+..|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999998 478999999999999999999999998766544 344444444 2244443 4455666
Q ss_pred HHHHHccC
Q 037911 387 VQGYGKEG 394 (609)
Q Consensus 387 ~~~~~~~~ 394 (609)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66666655
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=2.8e-15 Score=141.12 Aligned_cols=258 Identities=15% Similarity=0.046 Sum_probs=187.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCH
Q 037911 319 GLCKEGKVREAHQLFHRMVHRGLSPDI--VSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRL 396 (609)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (609)
-....|++..|+..++..... .|+. .....+..+|...|+++.|...++. .-.|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344566777777666654432 3332 2334456677777777777765543 1244566677777777777777
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 397 LSALNLVVELQRFGVSI-SRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDE 475 (609)
Q Consensus 397 ~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
++|++.++++...+..| +...+..+..++...|++++|...+++ +.+...+..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777776655333 455556666777788888888877776 45778888889999999999999999999
Q ss_pred HHHCCCCCCHHHH---HHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 037911 476 MVDRNIKPSLSTY---RALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQI 552 (609)
Q Consensus 476 ~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 552 (609)
+.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++.+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 98764 553321 22334455679999999999999986 46688899999999999999999999999999873 3
Q ss_pred CChhcHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCChhhHH
Q 037911 553 YDTESYNAVFNMFAEDGDLSK-LMELQKRFLRLGFAPNNLTCK 594 (609)
Q Consensus 553 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~ 594 (609)
-++.++..++..+...|+.++ +.++++++++. .|+.....
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~~ 272 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFIK 272 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 466789999999999999976 57899999865 66665443
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=1.5e-14 Score=145.51 Aligned_cols=347 Identities=12% Similarity=-0.014 Sum_probs=189.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCH---HHHHHHHHHHHhCCCCCCHHH
Q 037911 131 LIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLI---RESFKTFRKTLDVGFQPSIVS 207 (609)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~ 207 (609)
.+...+.+.|++++|.+.|+++.+. + +...+..+.. .|...|+. ++|+..|++..+. +...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~--g---~~~A~~~Lg~-------~y~~~g~~~d~~~A~~~~~~A~~~----~~~A 71 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL--G---YSEAQVGLAD-------IQVGTRDPAQIKQAEATYRAAADT----SPRA 71 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--T---CCTGGGTCC---------------------------------------C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHH-------HHHccCCCCCHHHHHHHHHHHHhC----CHHH
Confidence 3566667778888888888887765 2 2233333444 55666777 7888888877753 5556
Q ss_pred HHHHHHHHHhcC-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCHHhHH
Q 037911 208 CNFLLNGLLKLN-----CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVD---KVNGFLEKIEEEGFDPDLVTYN 279 (609)
Q Consensus 208 ~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~ 279 (609)
+..|...+...+ +.++|...|++..+.|. ...+..|...|...+..+ ++.+.+......| +.....
T Consensus 72 ~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~ 145 (452)
T 3e4b_A 72 QARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGL 145 (452)
T ss_dssp HHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHH
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHH
Confidence 666666454444 66778888888777552 225555666666554433 3444444444443 345566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037911 280 TLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEG---KVREAHQLFHRMVHRGLSPDIVSYNTLIFAYC 356 (609)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 356 (609)
.+...|...+.++++.+....+.+.-...+...+..|...|...| +.++|.+.|++..+.| .++...+..|...|.
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLG 224 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 666677776654444433222222111113336677777777777 7778888888877775 334444455666664
Q ss_pred Hc----CChHHHHHHHHHHHHCCCccCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037911 357 KE----GKMQESKSLLYEMMGNGIYPDTFTCQIIVQG-Y--GKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDN 429 (609)
Q Consensus 357 ~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 429 (609)
.. +++++|..+|++.. . -+...+..+... + ...+++++|+..|++..+.| +...+..+...|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG 296 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred CCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence 43 57778888887776 2 244555555555 3 45677777877777777665 4555666666655 33
Q ss_pred -----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---
Q 037911 430 -----RPFAATSLLERIGQDGYVPSLEIYNELMESLCK----CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG--- 497 (609)
Q Consensus 430 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--- 497 (609)
++.+|...+++.. . .+...+..|...|.. ..++++|..+|++..+.|. ......|...|..
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKG 369 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTT
T ss_pred CCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCC
Confidence 6666776666655 2 345555566655555 2367777777777666553 2333444444432
Q ss_pred -CCCHhHHHHHHHHHHHCC
Q 037911 498 -IGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 498 -~g~~~~A~~~~~~~~~~~ 515 (609)
..+.++|...|+...+.|
T Consensus 370 ~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 370 TKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp BCCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 346667777777766655
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=8e-15 Score=131.79 Aligned_cols=199 Identities=16% Similarity=0.153 Sum_probs=112.1
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
++++..+..+...+.+.|++++|...|+++++. .|.+...+..+.. .+.+.|++++|+..|+++++.. +
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~-------~~~~~g~~~~A~~~~~~al~~~-P 70 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE---NPQDPEALYWLAR-------TQLKLGLVNPALENGKTLVART-P 70 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---SSSCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-C
Confidence 345666777777777777777777777777754 4556666666666 6777777777777777777654 4
Q ss_pred CCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 037911 203 PSIVSCNFLLNGLLKL-----------NCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGF 271 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 271 (609)
.+...+..+..++... |++++|...|++..+.. +-+...+..+..++...|++++|+..|++..+..
T Consensus 71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 148 (217)
T 2pl2_A 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE- 148 (217)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-
Confidence 4566666677666666 66666666666555432 2234455555555555566666666665555554
Q ss_pred CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 272 DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 272 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
.+...+..+..++...|++++|+..|++..+..+. +...+..+...+...|++++|...|++.
T Consensus 149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34555555555555555555555555555554322 3445555555555555555555555543
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=1.5e-14 Score=145.45 Aligned_cols=371 Identities=10% Similarity=-0.018 Sum_probs=248.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCI---DQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG- 254 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g- 254 (609)
.+.+.|++++|++.|+++.+.| +..++..|...|...|+. ++|.+.|++..+. +...+..|...+...|
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 6788999999999999998866 344556667777777888 8999999998753 5556666766555555
Q ss_pred ----ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHh---HHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHH
Q 037911 255 ----DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLN---DAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVR 327 (609)
Q Consensus 255 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 327 (609)
+.++|...|++..+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...|...+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 78899999999998763 337777888887766543 3455555554444 4566777788888877554
Q ss_pred H----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcc----CCH
Q 037911 328 E----AHQLFHRMVHRGLSPDIVSYNTLIFAYCKEG---KMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKE----GRL 396 (609)
Q Consensus 328 ~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 396 (609)
+ +..+++..... +...+..|...|...| +.++|+..|++..+.|. ++...+..+...|... +++
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCH
T ss_pred cCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCH
Confidence 4 44444444332 3337888888999999 99999999999998863 4566556777777655 799
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 037911 397 LSALNLVVELQRFGVSISRDIYDYLIVA-L--CQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCD-----SVAD 468 (609)
Q Consensus 397 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~ 468 (609)
++|+..|++.. .| +...+..+... + ...+++++|...+++..+.| +...+..+...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999988 33 45566666666 4 46889999999999998776 6777888888887 45 9999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHH
Q 037911 469 ALLLKDEMVDRNIKPSLSTYRALICCFCG----IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM----EKDVNKAE 540 (609)
Q Consensus 469 A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 540 (609)
|.++|++.. . -+...+..|...|.. ..+.++|...|++..+.|. ......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999887 3 467777788777765 4599999999999998763 3345566666664 46899999
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 541 ALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
..++...+.|. ++.......+......++..+|.++.++.++
T Consensus 379 ~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 379 VFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999997763 2222222222222334466677777776554
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4e-14 Score=131.17 Aligned_cols=225 Identities=15% Similarity=0.014 Sum_probs=138.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc--cC----HHHHH
Q 037911 311 VTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIY--PD----TFTCQ 384 (609)
Q Consensus 311 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~ 384 (609)
..|..+...+...|++++|..+|+++.+.. .+...+..+..++...|++++|...++++.+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555566666666666666666665554 45555666666666666666666666655543110 01 24444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037911 385 IIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCD 464 (609)
Q Consensus 385 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (609)
.+...+...|++++|+..++++.+.. |+. ..+.+.|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~-------------------------------------~~~-------~~~~~~~ 119 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH-------------------------------------RTA-------DILTKLR 119 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------CCH-------HHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC-------------------------------------chh-------HHHHHHh
Confidence 45555555555555555555444431 221 2344456
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 465 SVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLG 544 (609)
Q Consensus 465 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (609)
++++|...++++..... .+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++
T Consensus 120 ~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 67777777777666431 234456666677777777777777777777643 3456677777777888888888888887
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 545 FFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.+.+.. +.+...|..+..++...|++++|.+.++++++.
T Consensus 198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777653 334567777778888888888888888877754
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.5e-14 Score=135.61 Aligned_cols=248 Identities=11% Similarity=-0.007 Sum_probs=161.1
Q ss_pred cCCChhHHHHHHHHhhhcCCCC--CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhH
Q 037911 102 CQSDSVSALTFFNWVKNDLEIK--PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWA 179 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (609)
..++++.|+..|+.+....... .++..|..++.++...|++++|...++++++. .|.....+..+.. .
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~-------~ 86 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGI-------Y 86 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------H
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc---CCCcHHHHHHHHH-------H
Confidence 3467888888888888642211 25677888888888888888888888888876 3456677777777 7
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
|...|++++|++.|+++++.. +.+..++..+..++...|++++|...|+++.+. .|+.......+..+...|++++|
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A 163 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQA 163 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHH
Confidence 888888888888888888754 445677777888888888888888888887763 35544444455555666778888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC---CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP---DLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
...+++..... +++...+ .++..+...++.++|++.+++..+..... +...+..+...+.+.|++++|...|+++
T Consensus 164 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 164 KEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88777666552 2233333 35566666777777777777766543211 1355666666666777777777777766
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 037911 337 VHRGLSPDIVSYNTLIFAYCKEGKMQESKSLL 368 (609)
Q Consensus 337 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 368 (609)
.+. .|+. +.....++...|++++|.+.+
T Consensus 242 l~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 654 2321 122233445556666655544
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1e-13 Score=128.49 Aligned_cols=225 Identities=12% Similarity=0.055 Sum_probs=150.4
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 037911 275 LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGL--SPD----IVSY 348 (609)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~ 348 (609)
...+..+...+...|++++|+..|++..+.. .+..+|..+...+...|++++|...+++..+... .++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 5678889999999999999999999999887 6889999999999999999999999999987521 112 5788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037911 349 NTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQD 428 (609)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 428 (609)
..+...+...|++++|...++++.+. .|+. ..+.+.|++++|+..++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 89999999999999999999999875 4553 34555667777777777776643 11233444444444444
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHH
Q 037911 429 NRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLM 508 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 508 (609)
|++++|...++++.+... .+..++..+..++...|++++|+..+
T Consensus 153 -----------------------------------~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 153 -----------------------------------SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp -----------------------------------TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------------------cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444455444444444321 23444444555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 509 DEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAK 548 (609)
Q Consensus 509 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (609)
+++.+.. +.+...+..+...+.+.|++++|.+.++++.+
T Consensus 197 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5554432 22344455555555555555555555555443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=2.4e-13 Score=132.26 Aligned_cols=234 Identities=11% Similarity=0.020 Sum_probs=182.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCC-HHHHHHHHHHHHhCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGL-IRESFKTFRKTLDVGFQP 203 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~~~~ 203 (609)
+...|..+..++...|++++|+..++++++. .|.+..++..+.. .+...|+ +++|+..|+++++.. +.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l---~P~~~~a~~~~g~-------~l~~~g~d~~eAl~~~~~al~l~-P~ 164 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRV-------LLKSLQKDLHEEMNYITAIIEEQ-PK 164 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCCHHHHHHHHHHHHHHC-TT
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CccCHHHHHHHHH-------HHHHcccCHHHHHHHHHHHHHHC-CC
Confidence 4567778888888889999999999999876 5667778887777 7888896 999999999998865 56
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 283 (609)
+..+|+.+..++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++.. +-+...|+.+..
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~ 242 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYF 242 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 78888888888888999999999999888753 4467888888888888899999999999888875 336778888888
Q ss_pred HHHh-cCCHhHH-----HHHHHHHhhCCccCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 284 SYCK-KGRLNDA-----FYLYRIMYRRNVLPDLVTYTTLMNGLCKEG--KVREAHQLFHRMVHRGLSPDIVSYNTLIFAY 355 (609)
Q Consensus 284 ~~~~-~g~~~~a-----~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 355 (609)
++.. .|..++| +..|++....... +...|..+...+...| ++++|.+.+.++ +. .+.+...+..+..+|
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHH
Confidence 8888 5665777 4778887776544 5677888887787777 578888888777 32 234566777777787
Q ss_pred HHcC---------ChHHHHHHHHHH-HHC
Q 037911 356 CKEG---------KMQESKSLLYEM-MGN 374 (609)
Q Consensus 356 ~~~g---------~~~~A~~~~~~~-~~~ 374 (609)
.+.| ..++|..+++++ .+.
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 7763 247888888887 544
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=1.4e-12 Score=121.93 Aligned_cols=223 Identities=13% Similarity=0.049 Sum_probs=140.7
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHH----hCCHHHHHHHHHHHHhCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVK----VGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~ 200 (609)
++.++..+...+...|++++|...|+++.+. .+...+..+.. .|.. .|++++|+..|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~-------~~~~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGV-------LYYQGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHH-------HHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHH-------HHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence 5566677777777777777777777777652 23445555555 5666 777777777777777654
Q ss_pred CCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCC
Q 037911 201 FQPSIVSCNFLLNGLLK----LNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK----NGDVDKVNGFLEKIEEEGFD 272 (609)
Q Consensus 201 ~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 272 (609)
+..++..+...+.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...+++..+.+
T Consensus 73 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 144 (273)
T 1ouv_A 73 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-- 144 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--
T ss_pred ---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--
Confidence 56666666666766 677777777777766643 55666666666666 667777777776666654
Q ss_pred CCHHhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC
Q 037911 273 PDLVTYNTLISSYCK----KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK----EGKVREAHQLFHRMVHRGLSPD 344 (609)
Q Consensus 273 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~ 344 (609)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +
T Consensus 145 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~ 217 (273)
T 1ouv_A 145 -DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N 217 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C
T ss_pred -cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---C
Confidence 44555556666665 666666666666666543 34455555666666 666666666666666543 2
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHC
Q 037911 345 IVSYNTLIFAYCK----EGKMQESKSLLYEMMGN 374 (609)
Q Consensus 345 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~ 374 (609)
...+..+...|.. .+++++|...|++..+.
T Consensus 218 ~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 218 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 4445555555555 56666666666665554
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=7.5e-14 Score=125.42 Aligned_cols=200 Identities=14% Similarity=0.005 Sum_probs=135.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 037911 202 QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTL 281 (609)
Q Consensus 202 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 281 (609)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566677777778888888888888888877653 4456777778888888888888888888877764 3356677777
Q ss_pred HHHHHhc-----------CCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 282 ISSYCKK-----------GRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNT 350 (609)
Q Consensus 282 i~~~~~~-----------g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 350 (609)
..++... |++++|+..|++..+..+. +...+..+...+...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 8888888888877776443 56677777777888888888888888877765 56777777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 351 LIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 351 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 407 (609)
+..++...|++++|...|++.++.. +.+...+..+...+.+.|++++|+..+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777888888888888888777652 2255667777777777788887777776543
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=4.1e-13 Score=123.95 Aligned_cols=201 Identities=12% Similarity=0.015 Sum_probs=131.5
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..|..++..+...|++++|...++++++. .|.....+..+.. .|...|++++|++.|+++.+.. +.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~-------~~~~~~~~~~A~~~~~~a~~~~-~~~~ 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI---DPSSADAHAALAV-------VFQTEMEPKLADEEYRKALASD-SRNA 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCChHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHC-cCcH
Confidence 445666677777777777777777777765 3445566666666 6777777777777777777654 3456
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICP-NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
..+..+...+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 184 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHH
Confidence 667777777777777777777777776522223 34556666666777777777777777766653 2245566666666
Q ss_pred HHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 285 YCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
+...|++++|...++++.+... .+...+..+...+...|+.++|.++++++.+.
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777777777777766665433 24555666666666666666666666666654
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=1.7e-12 Score=121.47 Aligned_cols=225 Identities=12% Similarity=0.032 Sum_probs=176.6
Q ss_pred CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCC
Q 037911 161 HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK----LNCIDQCWQVYEEMGRIGI 236 (609)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~ 236 (609)
.+...+..+.. .|...|++++|+..|++..+ +.+..++..+...+.. .+++++|...|++..+.+
T Consensus 4 ~~~~a~~~lg~-------~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 4 QDPKELVGLGA-------KSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp -CHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CChHHHHHHHH-------HHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 34555566666 78888899999999998888 3456778888888888 888999999988888764
Q ss_pred CCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCccC
Q 037911 237 CPNTHTFNILTHVFCK----NGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK----KGRLNDAFYLYRIMYRRNVLP 308 (609)
Q Consensus 237 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p 308 (609)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 144 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--- 144 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---
Confidence 67788888888888 888888888888888764 67778888888888 888888888888888765
Q ss_pred CHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCccCH
Q 037911 309 DLVTYTTLMNGLCK----EGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCK----EGKMQESKSLLYEMMGNGIYPDT 380 (609)
Q Consensus 309 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 380 (609)
+...+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +.
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 218 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NG 218 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CH
Confidence 45667777777777 788888888888888764 45667777778888 888888888888887764 25
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHHHHHCC
Q 037911 381 FTCQIIVQGYGK----EGRLLSALNLVVELQRFG 410 (609)
Q Consensus 381 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 410 (609)
..+..+...|.+ .+++++|+..+++..+.+
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 667777777777 788888888888877765
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=2.5e-13 Score=127.03 Aligned_cols=234 Identities=10% Similarity=0.069 Sum_probs=107.5
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC--C
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP--S 204 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~ 204 (609)
..+...+..+...|++++|+..++++++. .|.+...+..+.. .|...|++++|++.++++.+.+..+ .
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 73 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK---KYNSPYIYNRRAV-------CYYELAKYDLAQKDIETYFSKVNATKAK 73 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT---TCCCSTTHHHHHH-------HHHHTTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHhccCchhHH
Confidence 34445555556666666666666666544 2233344444444 5556666666666666655522111 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
..+|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 151 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQA 151 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHH
Confidence 2234555555555555555555555554431 2233445555555555555555555555554431 2233344444412
Q ss_pred HHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHH
Q 037911 285 YCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK---VREAHQLFHRMVHRG-LSPD------IVSYNTLIFA 354 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~g-~~p~------~~~~~~li~~ 354 (609)
+...+++++|++.|++..+.... +...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...
T Consensus 152 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 152 YYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 22233555555555555443221 23344444444444444 444444444443320 0111 1233444444
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 037911 355 YCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~ 373 (609)
|...|++++|...++++.+
T Consensus 231 ~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 4444445555444444443
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=7.7e-13 Score=119.60 Aligned_cols=202 Identities=12% Similarity=0.023 Sum_probs=131.2
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
++..|..++..+...|++++|.+.++++++. .|.+...+..+.. .|...|++++|++.++++.+.. +.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~a~~~~-~~~ 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS---DPKNELAWLVRAE-------IYQYLKVNDKAQESFRQALSIK-PDS 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---CccchHHHHHHHH-------HHHHcCChHHHHHHHHHHHHhC-CCC
Confidence 4566777777777778888888877777765 3445666666666 6777777777777777777654 445
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 037911 205 IVSCNFLLNGLLKL-NCIDQCWQVYEEMGRIGICPN-THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLI 282 (609)
Q Consensus 205 ~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 282 (609)
..++..+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 154 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELA 154 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHH
Confidence 66677777777777 777777777777766222222 4556666666777777777777777666553 22455666666
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 283 SSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
..+...|++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666666666666666543312445555555556666666666666666654
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=6.2e-13 Score=124.31 Aligned_cols=228 Identities=13% Similarity=0.016 Sum_probs=182.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCh
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN--THTFNILTHVFCKNGDV 256 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~ 256 (609)
.+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.+++..+.+..++ ...|..+...+...|++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 7889999999999999999865 44566888899999999999999999999987432222 34588899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 257 DKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
++|.+.+++..+.. +.+..++..+...|...|++++|+..|++..+.... +...|..+...+...+++++|.+.|+++
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSSFVKV 168 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998874 335678999999999999999999999999877433 5677777773444556999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CccC------HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 037911 337 VHRGLSPDIVSYNTLIFAYCKEGK---MQESKSLLYEMMGNG-IYPD------TFTCQIIVQGYGKEGRLLSALNLVVEL 406 (609)
Q Consensus 337 ~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 406 (609)
.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ...|..+...|...|++++|...++++
T Consensus 169 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 169 LELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8863 2346777778888888888 888999988877541 1133 256777888889999999999999998
Q ss_pred HHCC
Q 037911 407 QRFG 410 (609)
Q Consensus 407 ~~~~ 410 (609)
.+..
T Consensus 248 l~~~ 251 (272)
T 3u4t_A 248 LALD 251 (272)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8875
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=4.7e-14 Score=132.21 Aligned_cols=250 Identities=9% Similarity=-0.021 Sum_probs=158.2
Q ss_pred HhCCChhHHHHHHHHHHHhhCCC-CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037911 137 AWNNKFSFAMKMLCELVELVKDC-PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGL 215 (609)
Q Consensus 137 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 215 (609)
...|++++|+..++++++..+.. |.....+..+.. .|...|++++|+..|+++.+.. +.+..+|..+...+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 87 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGV-------LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYL 87 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHH-------HHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 34567888888888887642111 234556666666 7788888888888888887754 45677778888888
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHH
Q 037911 216 LKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAF 295 (609)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 295 (609)
...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|.
T Consensus 88 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~ 164 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAK 164 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHH
Confidence 88888888888888877642 335677777777788888888888888887765 344444444444556667777887
Q ss_pred HHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 296 YLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLS---PDIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 296 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
..+++...... ++...+ .++..+...++.++|...+.+..+.... .+...+..+...|.+.|++++|...|+++.
T Consensus 165 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 165 EVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77776665432 233333 3555666667777777777776554211 013556666777777777777777777776
Q ss_pred HCCCccCHHHHHHHHHHHHccCCHHHHHHHH
Q 037911 373 GNGIYPDTFTCQIIVQGYGKEGRLLSALNLV 403 (609)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 403 (609)
+. .|+. +.....++...|++++|++.+
T Consensus 243 ~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 AN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred hC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 54 2321 222234455556666665544
No 52
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=7.3e-11 Score=122.59 Aligned_cols=438 Identities=11% Similarity=0.066 Sum_probs=275.1
Q ss_pred HHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hH
Q 037911 146 MKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC---ID 222 (609)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~ 222 (609)
+..|++.+.. .|.+...+..++. ...+.+.++.+..+|+++... ++.+...|...+..-.+.+. ++
T Consensus 52 i~~lE~~l~~---np~d~~~W~~yi~-------~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~ 120 (679)
T 4e6h_A 52 IGKLNDMIEE---QPTDIFLYVKLLK-------HHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAA 120 (679)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHH
T ss_pred HHHHHHHHHH---CcCCHHHHHHHHH-------HHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHH
Confidence 3444555543 4566777777776 556667777777777777764 35566667777776666666 77
Q ss_pred HHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHHc-CC-CCC-HHhHHHHHHHHH----
Q 037911 223 QCWQVYEEMGRIG-ICPNTHTFNILTHVFCKNGDV--------DKVNGFLEKIEEE-GF-DPD-LVTYNTLISSYC---- 286 (609)
Q Consensus 223 ~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~li~~~~---- 286 (609)
.+..+|++..... .+|+...|..-+....+.++. +.+.++|+..... |. .++ ...|...+....
T Consensus 121 ~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 7777777776642 126666666655544444432 2334556554432 44 333 455666655432
Q ss_pred -----hcCCHhHHHHHHHHHhhCCccCCHhhHH---HHHHHH----------HhcCCHHHHHHHHHHHHHC--CCC----
Q 037911 287 -----KKGRLNDAFYLYRIMYRRNVLPDLVTYT---TLMNGL----------CKEGKVREAHQLFHRMVHR--GLS---- 342 (609)
Q Consensus 287 -----~~g~~~~a~~~~~~~~~~~~~p~~~~~~---~ll~~~----------~~~~~~~~a~~~~~~m~~~--g~~---- 342 (609)
..++++.+..+|++.+......-..+|. .+.... -...+++.|...+.++... ++.
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 2334566777777776532211112221 111110 0011234445555443321 111
Q ss_pred -----------C-----C---HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCH
Q 037911 343 -----------P-----D---IVSYNTLIFAYCKEG-------KMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRL 396 (609)
Q Consensus 343 -----------p-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (609)
| + ...|...+.---..+ ..+.+..+|++.+.. ++-+...|...+..+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 1 1 133444443322222 123455678887765 344677888888888888998
Q ss_pred HHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCC------------CHHHHH
Q 037911 397 LSAL-NLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDG---------YVP------------SLEIYN 454 (609)
Q Consensus 397 ~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------~~~~~~ 454 (609)
++|. .+|++..... +.+...+...+......|+++.|..+++++.... ..| ...+|.
T Consensus 360 ~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8997 9999988753 4566677778888889999999999998885421 013 234688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcC-CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 037911 455 ELMESLCKCDSVADALLLKDEMVDR-NIKPSLSTYRALICCFCGI-GRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM 532 (609)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 532 (609)
..+....+.|..+.|..+|.+..+. +. .....|...+..-.+. ++.+.|.++|+..++. .+-+...+...+.....
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 8888888899999999999999876 22 2233343333323333 5589999999999985 45567777788888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCC--ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 037911 533 EKDVNKAEALLGFFAKKFQIY--DTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600 (609)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 600 (609)
.|+.+.|..+|+........+ ....|..++..-.+.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 999999999999999763211 2367888888888999999999999999977 56666666666554
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=4.1e-13 Score=130.68 Aligned_cols=252 Identities=13% Similarity=0.086 Sum_probs=202.0
Q ss_pred CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCC
Q 037911 160 PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC-IDQCWQVYEEMGRIGICP 238 (609)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~ 238 (609)
|....++..+.. .+...|++++|+..|+++++.. +.+..+|+.+..++...|+ +++|+..|++..+.. +-
T Consensus 94 p~~~~a~~~lg~-------~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~ 164 (382)
T 2h6f_A 94 DKFRDVYDYFRA-------VLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PK 164 (382)
T ss_dssp HHHHHHHHHHHH-------HHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TT
T ss_pred hhhHHHHHHHHH-------HHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CC
Confidence 345566666666 7889999999999999999875 5678899999999999997 999999999998853 44
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHH
Q 037911 239 NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMN 318 (609)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 318 (609)
+...|..+..++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++.++. +...|+.+..
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~ 242 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYF 242 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 67889999999999999999999999999875 347888999999999999999999999999987665 7889999999
Q ss_pred HHHh-cCCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 037911 319 GLCK-EGKVREA-----HQLFHRMVHRGLSPDIVSYNTLIFAYCKEG--KMQESKSLLYEMMGNGIYPDTFTCQIIVQGY 390 (609)
Q Consensus 319 ~~~~-~~~~~~a-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (609)
++.+ .|..++| +..|++..+.. +-+...|+.+...+...| ++++|.+.+.++ +. .+.+...+..+...|
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHH
Confidence 9998 5665777 48888887753 235678888888888877 688999998887 33 344667788888888
Q ss_pred HccC---------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHH
Q 037911 391 GKEG---------RLLSALNLVVEL-QRFGVSISRDIYDYLIVALC 426 (609)
Q Consensus 391 ~~~~---------~~~~A~~~~~~~-~~~~~~~~~~~~~~ll~~~~ 426 (609)
.+.| ..++|+++++++ .+.+ +.....|..+...+.
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 8764 258899999998 5553 334455555554443
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=9.1e-13 Score=119.09 Aligned_cols=203 Identities=10% Similarity=0.033 Sum_probs=120.2
Q ss_pred CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 037911 161 HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT 240 (609)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 240 (609)
.+...+..+.. .+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+.
T Consensus 6 ~~~~~~~~~~~-------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 76 (225)
T 2vq2_A 6 QVSNIKTQLAM-------EYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSA 76 (225)
T ss_dssp HHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ccHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCh
Confidence 34455555555 6677777777777777776643 3456666666667777777777777777665532 3345
Q ss_pred HHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHH
Q 037911 241 HTFNILTHVFCKN-GDVDKVNGFLEKIEEEGFDPD-LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMN 318 (609)
Q Consensus 241 ~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 318 (609)
.++..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|+..++++.+.... +...+..+..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 155 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHH
Confidence 5666666666666 666666666666665222222 445556666666666666666666666554322 3455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 319 GLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
.+.+.|++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666666666655542112444455555555566666666666655543
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.1e-12 Score=121.11 Aligned_cols=192 Identities=13% Similarity=0.034 Sum_probs=112.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.|...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 46 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 46 GYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHH
Confidence 5666777777777777766643 3455666666666666666666666666665532 2345556666666666666666
Q ss_pred HHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 259 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
|.+.++++.+.+..| +...+..+...+...|++++|.+.|++..+.... +...+..+...+...|++++|...++++.
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666665522223 3445555556666666666666666666554322 34555555666666666666666666655
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037911 338 HRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 338 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
+.. +.+...+..+...+...|+.++|.+.++++.+.
T Consensus 203 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 203 QGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 532 234445555555555666666666666655543
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=1.8e-13 Score=125.50 Aligned_cols=201 Identities=11% Similarity=0.088 Sum_probs=99.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
.+..|..++..+...|++++|...++++++. .|.+...+..+.. .|...|++++|++.|+++.+.. +.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~-------~~~~~~~~~~A~~~~~~~~~~~-~~~ 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---NKEDAIPYINFAN-------LLSSVNELERALAFYDKALELD-SSA 90 (243)
T ss_dssp --------------------CCTTHHHHHTT---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---CcccHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHcC-Ccc
Confidence 4555555666666666666666666666543 3344555555555 5666666666666666665543 334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5555555666666666666666666655432 2344555555555566666666666666555442 2244455555555
Q ss_pred HHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 285 YCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
+...|++++|++.|+++.+.... +..++..+...+...|++++|...++++.+.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55555555555555555544322 3445555555555555555555555555543
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.55 E-value=2.9e-10 Score=118.06 Aligned_cols=441 Identities=9% Similarity=0.004 Sum_probs=292.2
Q ss_pred HHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCC--
Q 037911 108 SALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGL-- 185 (609)
Q Consensus 108 ~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~-- 185 (609)
..+.-|+..+.. .+.|..+|..++..+.+.+.++.|..+|+.++.. .|.....+...+. .-.+.|.
T Consensus 50 d~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~---fP~~~~lW~~Yi~-------~E~~~~~~~ 117 (679)
T 4e6h_A 50 DVIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR---FPLMANIWCMRLS-------LEFDKMEEL 117 (679)
T ss_dssp CHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHTC--CC
T ss_pred HHHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHhhCCcc
Confidence 344444444432 2468899999999998889999999999999976 5667777777776 5567777
Q ss_pred -HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh--------HHHHHHHHHHhh-CCC-CCC-HHHHHHHHHHHH-
Q 037911 186 -IRESFKTFRKTLDVG-FQPSIVSCNFLLNGLLKLNCI--------DQCWQVYEEMGR-IGI-CPN-THTFNILTHVFC- 251 (609)
Q Consensus 186 -~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~l~~~~~- 251 (609)
++.+.++|++.+... .+|++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+....
T Consensus 118 ~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 118 DAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp CHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh
Confidence 999999999998753 138888888888766665543 334577776543 455 443 456666665433
Q ss_pred --------HcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-------------cCCHhHHHHHHHHHhh--CCcc-
Q 037911 252 --------KNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK-------------KGRLNDAFYLYRIMYR--RNVL- 307 (609)
Q Consensus 252 --------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------~g~~~~a~~~~~~~~~--~~~~- 307 (609)
..++++.+..+|+.+.......-..+|......--. ..+++.|...+.++.. .++.
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhh
Confidence 234577888888888853211112333222111101 1123445555554332 1110
Q ss_pred --CC--------------------HhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 037911 308 --PD--------------------LVTYTTLMNGLCKEG-------KVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKE 358 (609)
Q Consensus 308 --p~--------------------~~~~~~ll~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 358 (609)
|. ...|...+.---..+ ..+.+..+|++.... ++-+...|...+..+...
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEK 356 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhc
Confidence 11 123444443322222 123456778888765 344677888888888888
Q ss_pred CChHHHH-HHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---------CCC------------HH
Q 037911 359 GKMQESK-SLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGV---------SIS------------RD 416 (609)
Q Consensus 359 g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~------------~~ 416 (609)
|+.++|. .+|+..... ++.+...|...+....+.|++++|..+|+++.+... .|+ ..
T Consensus 357 ~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp SCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 9999997 999999864 344566677888888899999999999999876410 131 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 417 IYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKC-DSVADALLLKDEMVDRNIKPSLSTYRALICCF 495 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 495 (609)
+|...+....+.|+.+.|..+|.+....-.......|...+..-.+. ++.+.|.++|+..++. ..-+...|...+...
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 67777788888889999999999997651122334444333333343 5599999999999876 334566677888878
Q ss_pred hcCCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 496 CGIGRSGEAVSLMDEMLESGMLP--DSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
...|+.+.|..+|++++.....+ ....|...+..-.+.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 88899999999999998753211 3457888888888999999999999999988 56655555555544
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=3.9e-13 Score=133.73 Aligned_cols=279 Identities=14% Similarity=0.088 Sum_probs=182.6
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC-cHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC--
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH-SVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV-- 199 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 199 (609)
......+...+..+...|++++|...|+++++..+..+. ...++..+.. .|...|++++|+..++++.+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGN-------AYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHHHH
Confidence 346667788899999999999999999999987222111 1345666666 889999999999999987652
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCC----------------
Q 037911 200 --GFQ-PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGI-CPN----THTFNILTHVFCKNGD---------------- 255 (609)
Q Consensus 200 --~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~---------------- 255 (609)
+.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 211 2255677788888899999999998888765210 011 3467777888888888
Q ss_pred ----hHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCcc-CC----HhhHHHHHHHHH
Q 037911 256 ----VDKVNGFLEKIEEE----GFDP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVL-PD----LVTYTTLMNGLC 321 (609)
Q Consensus 256 ----~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~ll~~~~ 321 (609)
+++|...+++..+. +..+ ...++..+...+...|++++|++.+++..+.... ++ ..++..+...+.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 88888887776542 1111 1345677777778888888888888777643111 11 235666777777
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHH
Q 037911 322 KEGKVREAHQLFHRMVHR----GLSPD-IVSYNTLIFAYCKEGKMQESKSLLYEMMGN----GIYP-DTFTCQIIVQGYG 391 (609)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~ 391 (609)
..|++++|...+++..+. +..+. ..++..+...|...|++++|...+++..+. +..+ ...++..+...|.
T Consensus 239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 777777777777776542 11101 345666667777777777777777766542 1011 1345556666666
Q ss_pred ccCCHHHHHHHHHHHHH
Q 037911 392 KEGRLLSALNLVVELQR 408 (609)
Q Consensus 392 ~~~~~~~A~~~~~~~~~ 408 (609)
..|++++|...+++..+
T Consensus 319 ~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 319 ALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665543
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=2.9e-13 Score=135.04 Aligned_cols=273 Identities=13% Similarity=0.091 Sum_probs=189.0
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcH----HhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC---
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSV----DVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV--- 199 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--- 199 (609)
..+..+...+...|++++|+..|+++++.. |.+. .++..+.. .|...|++++|+..|+++.+.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~-------~~~~~g~~~~A~~~~~~al~~~~~ 118 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG---TEDLRTLSAIYSQLGN-------AYFYLGDYNKAMQYHKHDLTLAKS 118 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---ccChhHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHHHHH
Confidence 344556777888888999999888888762 2232 35556666 788889999999988887653
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-----CCCCHHHHHHHHHHHHHcCC-----------------
Q 037911 200 -G-FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIG-----ICPNTHTFNILTHVFCKNGD----------------- 255 (609)
Q Consensus 200 -~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~g~----------------- 255 (609)
+ .+....++..+...+...|++++|...+++..+.. .+....++..+...|...|+
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 119 MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 1 12345567788888889999999999888875531 11224567778888888888
Q ss_pred hHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCcc-CC----HhhHHHHHHHHHhcCC
Q 037911 256 VDKVNGFLEKIEEE----GFDP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVL-PD----LVTYTTLMNGLCKEGK 325 (609)
Q Consensus 256 ~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~ll~~~~~~~~ 325 (609)
+++|.+.+++..+. +..+ ...++..+...|...|++++|++.+++..+.... ++ ..++..+...+...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 88888888776542 1111 2346777788888889998888888887653211 11 2367778888888888
Q ss_pred HHHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CccCHHHHHHHHHHHHccCC
Q 037911 326 VREAHQLFHRMVHRGL----S-PDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNG-----IYPDTFTCQIIVQGYGKEGR 395 (609)
Q Consensus 326 ~~~a~~~~~~m~~~g~----~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ 395 (609)
+++|...+++..+... . ....++..+...+...|++++|...+++.++.. ......++..+...|...|+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 8888888887765310 0 114566777788888888888888888776431 01113456677777788888
Q ss_pred HHHHHHHHHHHHHC
Q 037911 396 LLSALNLVVELQRF 409 (609)
Q Consensus 396 ~~~A~~~~~~~~~~ 409 (609)
+++|...+++..+.
T Consensus 359 ~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 359 HERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777654
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=6.1e-13 Score=121.93 Aligned_cols=205 Identities=9% Similarity=0.018 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037911 381 FTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESL 460 (609)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
..+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 334444444555555555555555554433 2244555555555555555555555555554332 23556666667777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 037911 461 CKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAE 540 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 540 (609)
...|++++|.++++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777765432 355666667777777777777777777776542 345667777777777777888888
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 037911 541 ALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLT 592 (609)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 592 (609)
+.++.+.+.. +.+..++..++.+|...|++++|.+.++++++. .|+...
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 228 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHML 228 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHH
Confidence 7777777653 334566777777788888888888888877754 444433
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=1.2e-12 Score=126.35 Aligned_cols=277 Identities=13% Similarity=0.091 Sum_probs=177.2
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC-cHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC----C
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH-SVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV----G 200 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~ 200 (609)
...+...+..+...|++++|...++++++..+..+. ....+..+.. .|...|++++|++.++++.+. +
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGN-------AYFYLHDYAKALEYHHHDLTLARTIG 77 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHhhccc
Confidence 345566778888899999999999999887222111 0345666666 788999999999998887642 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCC-------------------
Q 037911 201 F-QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGI-CPN----THTFNILTHVFCKNGD------------------- 255 (609)
Q Consensus 201 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~------------------- 255 (609)
. +....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 1 12355677788888888999999988888754210 112 3467777788888888
Q ss_pred -hHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCc-----cCCHhhHHHHHHHHHhcC
Q 037911 256 -VDKVNGFLEKIEEE----GFDP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNV-----LPDLVTYTTLMNGLCKEG 324 (609)
Q Consensus 256 -~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~p~~~~~~~ll~~~~~~~ 324 (609)
+++|.+.+++.... +..+ ...++..+...+...|++++|.+.+++..+... .....++..+...+...|
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 88888877765432 1111 134566777777888888888888877764311 111235666777777777
Q ss_pred CHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CccCHHHHHHHHHHHHccC
Q 037911 325 KVREAHQLFHRMVHRGL-SPD----IVSYNTLIFAYCKEGKMQESKSLLYEMMGNG-----IYPDTFTCQIIVQGYGKEG 394 (609)
Q Consensus 325 ~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 394 (609)
++++|...+++..+... ..+ ..++..+...+...|++++|...+++..+.. ......++..+...|.+.|
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 77777777777654210 011 3455666667777777777777777665421 0111234555666666666
Q ss_pred CHHHHHHHHHHHHHC
Q 037911 395 RLLSALNLVVELQRF 409 (609)
Q Consensus 395 ~~~~A~~~~~~~~~~ 409 (609)
++++|...+++..+.
T Consensus 318 ~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 318 NHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHH
Confidence 666666666666543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.5e-12 Score=129.50 Aligned_cols=228 Identities=15% Similarity=0.095 Sum_probs=142.6
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPS----IVSCNFLLNGLLKLNCIDQCWQVYEEMGRI----GICP-NTHTFNILTHV 249 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~ 249 (609)
.+...|++++|+..|+++.+.+ +.+ ...|..+...+...|++++|...+++.... +-.| ...++..+...
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 7888999999999999988864 233 356777888888889999998888876432 1111 24566777778
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCC--------------------HhHHHHHHHHHhhC
Q 037911 250 FCKNGDVDKVNGFLEKIEEEGFD-PD----LVTYNTLISSYCKKGR--------------------LNDAFYLYRIMYRR 304 (609)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~~~~ 304 (609)
+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|++.+++..+.
T Consensus 97 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 97 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888888876653100 11 3366777777777888 77777777765532
Q ss_pred ----CccC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037911 305 ----NVLP-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGL-SPD----IVSYNTLIFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 305 ----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
+..| ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.
T Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 177 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1111 133566666677777777777777766654210 011 235566666666677777777666665532
Q ss_pred ----CCcc-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 375 ----GIYP-DTFTCQIIVQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 375 ----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 407 (609)
+..+ ...++..+...|...|++++|...+++..
T Consensus 257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 1000 03345555555666666666666655543
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=2.8e-12 Score=127.86 Aligned_cols=272 Identities=12% Similarity=0.025 Sum_probs=125.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHHhHHHH
Q 037911 211 LLNGLLKLNCIDQCWQVYEEMGRIGICPNT----HTFNILTHVFCKNGDVDKVNGFLEKIEEE----GF-DPDLVTYNTL 281 (609)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 281 (609)
+...+...|++++|...|+++.+.+ +.+. ..+..+...+...|++++|...+++..+. +. .....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3334444455555555555544421 1111 23444444555555555555555544332 00 1122344555
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCC-----ccCCHhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 037911 282 ISSYCKKGRLNDAFYLYRIMYRRN-----VLPDLVTYTTLMNGLCKEGK-----------------VREAHQLFHRMVHR 339 (609)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~m~~~ 339 (609)
...|...|++++|+..+++..+.. ......++..+...+...|+ +++|.+.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 555555556555555555544320 01123345555555555555 55555555554331
Q ss_pred ----CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc-cC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 037911 340 ----GL-SPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIY-PD----TFTCQIIVQGYGKEGRLLSALNLVVELQRF 409 (609)
Q Consensus 340 ----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (609)
+. .....++..+...+...|++++|...+++..+.... .+ ...+..+...|...|++++|+..+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 10 011234555556666666666666666655432100 01 124555555556666666666655554332
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC
Q 037911 410 GVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDR----NI-KPS 484 (609)
Q Consensus 410 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~ 484 (609)
... .++ ......++..+...+...|++++|...+++..+. +. ...
T Consensus 293 ~~~---------------~~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 342 (411)
T 4a1s_A 293 AVE---------------LGE---------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342 (411)
T ss_dssp HHH---------------TTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHH---------------cCC---------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHH
Confidence 100 000 0001234444555555555555555555554422 10 011
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 037911 485 LSTYRALICCFCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (609)
..++..+..+|...|++++|...++++.+
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 23455555666666666666666666654
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=2.2e-12 Score=124.53 Aligned_cols=273 Identities=14% Similarity=0.054 Sum_probs=205.3
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhcCCCCCC--HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCC---CCCcHHhHHHH
Q 037911 95 ISRVLLRCQSDSVSALTFFNWVKNDLEIKPT--SSNYCLIVHILAWNNKFSFAMKMLCELVELVKD---CPHSVDVFQDL 169 (609)
Q Consensus 95 ~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l 169 (609)
+.+......|+++.|+.+|+.+.......+. ...|..++..+...|++++|...++++++.... .+.....+..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 4455566779999999999999974211111 477889999999999999999999998765221 22334556666
Q ss_pred hhccccchhHHHHhCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHH
Q 037911 170 ISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF-QPS----IVSCNFLLNGLLKLNC--------------------IDQC 224 (609)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~--------------------~~~a 224 (609)
.. .|...|++++|+..++++.+... .++ ..++..+...+...|+ +++|
T Consensus 90 ~~-------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 90 GN-------TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HH-------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HH-------HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 66 89999999999999999875311 112 3478888889999999 9999
Q ss_pred HHHHHHHhhC----C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCCHhHH
Q 037911 225 WQVYEEMGRI----G-ICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFD-PD----LVTYNTLISSYCKKGRLNDA 294 (609)
Q Consensus 225 ~~~~~~m~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a 294 (609)
.+.+++.... + .......+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999886542 1 1112456788888999999999999999987654110 11 33788888999999999999
Q ss_pred HHHHHHHhhCCcc-----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCChHHH
Q 037911 295 FYLYRIMYRRNVL-----PDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR----GL-SPDIVSYNTLIFAYCKEGKMQES 364 (609)
Q Consensus 295 ~~~~~~~~~~~~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A 364 (609)
...+++..+.... ....++..+...+...|++++|...+++..+. +. .....++..+...|.+.|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999988753211 11457788889999999999999999988754 11 11144677889999999999999
Q ss_pred HHHHHHHHHC
Q 037911 365 KSLLYEMMGN 374 (609)
Q Consensus 365 ~~~~~~~~~~ 374 (609)
...+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=6e-11 Score=112.85 Aligned_cols=218 Identities=10% Similarity=0.064 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHH-------HhCCH-------HHHHHHHHHHHhCCCCCCHHHH
Q 037911 143 SFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYV-------KVGLI-------RESFKTFRKTLDVGFQPSIVSC 208 (609)
Q Consensus 143 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~ 208 (609)
++|...|++++.. .|.+..++..++. .+. +.|++ ++|+.+|++.++.-.+.+...|
T Consensus 33 ~~a~~~~~~al~~---~p~~~~~w~~~~~-------~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLV---LGHHPDIWYEAAQ-------YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHH-------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHH-------HHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHH
Confidence 6788999999976 4667888877776 443 35775 8999999999883124567788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 037911 209 NFLLNGLLKLNCIDQCWQVYEEMGRIGICPN-TH-TFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYC 286 (609)
Q Consensus 209 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 286 (609)
..++..+.+.|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+.+ +.+...|........
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 88999999999999999999998874 454 33 78888888888888888888888888763 223344443332222
Q ss_pred -hcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCChH
Q 037911 287 -KKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG-LSP--DIVSYNTLIFAYCKEGKMQ 362 (609)
Q Consensus 287 -~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~ 362 (609)
..|+.++|..+|++..+..+. +...|..++..+.+.|++++|..+|++..+.. +.| ....|..++....+.|+.+
T Consensus 180 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 257888888888877765332 56677777777777788888888888877752 344 3456777777777777777
Q ss_pred HHHHHHHHHHHC
Q 037911 363 ESKSLLYEMMGN 374 (609)
Q Consensus 363 ~A~~~~~~~~~~ 374 (609)
.|..+++++.+.
T Consensus 259 ~a~~~~~~a~~~ 270 (308)
T 2ond_A 259 SILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=7.7e-12 Score=123.34 Aligned_cols=227 Identities=8% Similarity=-0.060 Sum_probs=132.2
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC------CCCHHHHHHHH
Q 037911 354 AYCKEGKMQESKSLLYEMMGN----GIYP-DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGV------SISRDIYDYLI 422 (609)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~ll 422 (609)
.+...|++++|...+++..+. +-.+ ...++..+...|...|++++|+..+.+..+... .....++..+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 334445555555555554432 1011 123344445555555555555555544433210 00123445555
Q ss_pred HHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 037911 423 VALCQDNRPFAATSLLERIGQD----GY-VPSLEIYNELMESLCKCDSVADALLLKDEMVDR----NI-KPSLSTYRALI 492 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~li 492 (609)
.++...|++++|...+++.... +. .....++..+...|...|++++|...+++..+. +. .....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 5555666666666555554211 10 111246677788888888888888888877752 22 23355677788
Q ss_pred HHHhcCCCHhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCC-hhcHHHHHHH
Q 037911 493 CCFCGIGRSGEAVSLMDEMLES----GMLPDSQICRVLINGYCMEKD---VNKAEALLGFFAKKFQIYD-TESYNAVFNM 564 (609)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 564 (609)
.++...|++++|...++++.+. +-+.....+..+...+...|+ +++|..++++. +..++ ...+..+...
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 8888888888888888887653 111112235667788888888 66666666654 22222 3467778888
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 037911 565 FAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~ 583 (609)
|...|++++|.+.+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988875
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.8e-11 Score=106.79 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=99.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
++..|..++.++...|++++|++.|+++++. .|.+...+..+.. .|.+.|++++|+..++++.... +.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~-------~~~~~~~~~~a~~~~~~~~~~~-~~~ 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---DPNNVETLLKLGK-------TYMDIGLPNDAIESLKKFVVLD-TTS 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHhcC-chh
Confidence 4556666666666666666666666666655 3455566666655 6666666666666666666543 344
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
...+..+...+...++++.|.+.+++..+.. +.+...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLA 150 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHH
Confidence 5555555566666666666666666655432 2345555556666666666666666666655543 2244555556666
Q ss_pred HHhcCCHhHHHHHHHHHhhC
Q 037911 285 YCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~ 304 (609)
|.+.|++++|++.|++..+.
T Consensus 151 ~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 151 YEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHhC
Confidence 66666666666666655554
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=2.2e-11 Score=120.10 Aligned_cols=230 Identities=9% Similarity=-0.005 Sum_probs=126.3
Q ss_pred HhCCChhHHHHHHHHHHHhhCCCCCcHH--hHHHHhhccccchhHHHHhCCHHHHH-----------HHHHHHHhCCCCC
Q 037911 137 AWNNKFSFAMKMLCELVELVKDCPHSVD--VFQDLISCTEDCNWAYVKVGLIRESF-----------KTFRKTLDVGFQP 203 (609)
Q Consensus 137 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~g~~~~A~-----------~~~~~~~~~~~~~ 203 (609)
.+.+++++|..+++++.+..+....+.. .|-.++... ...-.+.++.+. +.++.+.... .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r-----~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~ 95 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFR-----HNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--A 95 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH-----HHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--H
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH-----HHHHHhhcCcccccccccccchhhHHHHHHhcC--C
Confidence 4678889999998888776444322332 333333210 112223333333 4444443311 1
Q ss_pred CHHH------HHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 037911 204 SIVS------CNFLLNGLLKLNCIDQCWQVYEEMGRI----GICP-NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFD 272 (609)
Q Consensus 204 ~~~~------~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 272 (609)
+... +......+...|++++|...|++..+. +-.+ ...++..+...+...|++++|...+++..+....
T Consensus 96 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 96 RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 1111 122445566778888888888777653 1111 2356667777777777777777777776543100
Q ss_pred -C-----CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCcc-----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 037911 273 -P-----DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVL-----PDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR-- 339 (609)
Q Consensus 273 -~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-- 339 (609)
+ ...+++.+...|...|++++|++.|++..+.... ....++..+...+...|++++|...+++..+.
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 1 1345666667777777777777777666542110 01235556666666666666666666666551
Q ss_pred --CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 340 --GL-SPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 340 --g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
+. +....++..+...+.+.|++++|...+++..+
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12 22344556666666666666666666666543
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=2.3e-11 Score=105.97 Aligned_cols=167 Identities=11% Similarity=0.119 Sum_probs=120.9
Q ss_pred cHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH
Q 037911 162 SVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTH 241 (609)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 241 (609)
+..+|..+.. .|.+.|++++|++.|+++++.. +-+..+|..+..++.+.|++++|...++...... +.+..
T Consensus 4 ~~~iy~~lG~-------~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 74 (184)
T 3vtx_A 4 TTTIYMDIGD-------KKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAE 74 (184)
T ss_dssp CHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred HHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHH
Confidence 5667777777 7888888888888888887765 4567777777888888888888888887776642 34456
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHH
Q 037911 242 TFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLC 321 (609)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 321 (609)
.+..+...+...++++.+...+.+..+.. +.+...+..+...+.+.|++++|++.|++..+..+. +..+|..+..++.
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHH
Confidence 66667777777778888887777777653 335666777777777777777777777777765443 5666777777777
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 037911 322 KEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~ 339 (609)
+.|++++|.+.|++..+.
T Consensus 153 ~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHhC
Confidence 777777777777777664
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=6.8e-12 Score=126.91 Aligned_cols=212 Identities=12% Similarity=0.004 Sum_probs=137.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCCh-hHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC
Q 037911 106 SVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKF-SFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG 184 (609)
Q Consensus 106 ~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 184 (609)
.+.|+..++..... .+.+...|..+..++...|++ ++|++.|+++++. .|.....+..+.. .|...|
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---~p~~~~a~~~lg~-------~~~~~g 151 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---EPELVEAWNQLGE-------VYWKKG 151 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHT
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---CCCCHHHHHHHHH-------HHHHcC
Confidence 45566666655432 234677777777777777777 7777777777765 3455666777766 777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL---------NCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN-- 253 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-- 253 (609)
++++|++.|+++++.. |+...+..+..++... |++++|.+.|++..+.. +.+...|..+..+|...
T Consensus 152 ~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 152 DVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp CHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 7777777777777654 5566777777777777 77777777777766642 33456666666666666
Q ss_pred ------CChHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC
Q 037911 254 ------GDVDKVNGFLEKIEEEGFD--PDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK 325 (609)
Q Consensus 254 ------g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 325 (609)
|++++|+..|++..+.... -+...|..+..+|...|++++|++.|++..+.... +...+..+...+...|+
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 6677777777776665210 25566666666666777777777777666655432 44556666666666666
Q ss_pred HHHHHHHH
Q 037911 326 VREAHQLF 333 (609)
Q Consensus 326 ~~~a~~~~ 333 (609)
+++|.+.+
T Consensus 308 ~~eAi~~~ 315 (474)
T 4abn_A 308 LTSLLESK 315 (474)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 66665544
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=9.1e-11 Score=111.62 Aligned_cols=219 Identities=6% Similarity=-0.038 Sum_probs=178.0
Q ss_pred hHHHHHHHHhhhcCCCCCCHHhHHHHHHHHH-------hCCCh-------hHHHHHHHHHHHhhCCCCCcHHhHHHHhhc
Q 037911 107 VSALTFFNWVKNDLEIKPTSSNYCLIVHILA-------WNNKF-------SFAMKMLCELVELVKDCPHSVDVFQDLISC 172 (609)
Q Consensus 107 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (609)
+.|+..|+.+... .+.++..|..++..+. +.|++ ++|..+|+++++. -.|.+..++..++.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~- 107 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYAD- 107 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHH-
Confidence 5788899888864 3557889998888876 45886 8999999999962 14567778888888
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIV-SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFC 251 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 251 (609)
.+.+.|++++|.++|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+.. +.+...|........
T Consensus 108 ------~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 108 ------YEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 179 (308)
T ss_dssp ------HHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHH
T ss_pred ------HHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 8899999999999999999854 22344 89999999999999999999999998854 344555544433322
Q ss_pred -HcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCC-ccC--CHhhHHHHHHHHHhcCCHH
Q 037911 252 -KNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRN-VLP--DLVTYTTLMNGLCKEGKVR 327 (609)
Q Consensus 252 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~ll~~~~~~~~~~ 327 (609)
..|+.++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+
T Consensus 180 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3699999999999998763 3367889999999999999999999999999863 344 4668888899999999999
Q ss_pred HHHHHHHHHHHC
Q 037911 328 EAHQLFHRMVHR 339 (609)
Q Consensus 328 ~a~~~~~~m~~~ 339 (609)
.|..+++++.+.
T Consensus 259 ~a~~~~~~a~~~ 270 (308)
T 2ond_A 259 SILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=2.1e-12 Score=123.19 Aligned_cols=242 Identities=16% Similarity=0.131 Sum_probs=162.8
Q ss_pred CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037911 159 CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV-------GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEM 231 (609)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 231 (609)
.|.....+..+.. .|...|++++|+..|+++.+. ..+....++..+...+...|++++|...+++.
T Consensus 23 ~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 95 (311)
T 3nf1_A 23 IPARLRTLHNLVI-------QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA 95 (311)
T ss_dssp SCHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455667777777 899999999999999999873 33445677888999999999999999999988
Q ss_pred hhC------CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHHhcCCHhHHHHH
Q 037911 232 GRI------GI-CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE------GFDP-DLVTYNTLISSYCKKGRLNDAFYL 297 (609)
Q Consensus 232 ~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 297 (609)
.+. +- +....++..+...+...|++++|...+++..+. +..| ...++..+...+...|++++|++.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 96 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 653 11 233567888888999999999999999988764 2222 345678888899999999999999
Q ss_pred HHHHhhC------CccC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHH
Q 037911 298 YRIMYRR------NVLP-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR-------GLSPDI-------VSYNTLIFAYC 356 (609)
Q Consensus 298 ~~~~~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~-------~~~~~li~~~~ 356 (609)
++++.+. +..| ...++..+...+...|++++|...++++.+. ...+.. ..+..+...+.
T Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (311)
T 3nf1_A 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 255 (311)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchh
Confidence 9888764 1122 3456778888889999999999999888753 111111 11222223333
Q ss_pred HcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 357 KEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
..+.+.++...+....... +.+..++..+...|.+.|++++|..++++..+
T Consensus 256 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 256 DGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445555555665555431 22445677777777777888877777776654
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=8.5e-12 Score=126.18 Aligned_cols=212 Identities=10% Similarity=-0.064 Sum_probs=130.6
Q ss_pred hhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037911 142 FSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLI-RESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC 220 (609)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 220 (609)
++++...+++... ..+.....+..+.. .|...|++ ++|++.|+++++.. +.+..+|..+..+|...|+
T Consensus 84 ~~~al~~l~~~~~---~~~~~a~~~~~lg~-------~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 84 MEKTLQQMEEVLG---SAQVEAQALMLKGK-------ALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHT---TCCCCHHHHHHHHH-------HHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc---cCchhHHHHHHHHH-------HHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC
Confidence 4455555554442 23455666666666 67777777 77777777776654 3456677777777777777
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---
Q 037911 221 IDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN---------GDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK--- 288 (609)
Q Consensus 221 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 288 (609)
+++|.+.|++..+. .|+...+..+...+... |++++|++.+++..+.. +.+...|..+..+|...
T Consensus 153 ~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 153 VTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHh
Confidence 77777777777664 35566666666666666 67777777777666653 22455666666666666
Q ss_pred -----CCHhHHHHHHHHHhhCCcc--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 037911 289 -----GRLNDAFYLYRIMYRRNVL--PDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKM 361 (609)
Q Consensus 289 -----g~~~~a~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 361 (609)
|++++|++.|++..+.... -+...|..+..++...|++++|.+.|++..+.. +.+...+..+..++...|++
T Consensus 230 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 230 TGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 6666666666666654320 255566666666666666666666666665542 22344555555566666666
Q ss_pred HHHHHHH
Q 037911 362 QESKSLL 368 (609)
Q Consensus 362 ~~A~~~~ 368 (609)
++|...+
T Consensus 309 ~eAi~~~ 315 (474)
T 4abn_A 309 TSLLESK 315 (474)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6655544
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=3e-12 Score=122.18 Aligned_cols=242 Identities=16% Similarity=0.135 Sum_probs=172.3
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhC-----CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVK-----DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
....++..++..+...|++++|..+++++++... ..+.....+..+.. .|...|++++|+..++++.+
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~-------~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL-------VYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHH
Confidence 3567888899999999999999999999987421 23345566777777 89999999999999999986
Q ss_pred C------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 199 V------G-FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI------GI-CPNTHTFNILTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 199 ~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (609)
. + .+....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|.+.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4 2 2334667888999999999999999999998763 21 2235678888999999999999999999
Q ss_pred HHHHc------CCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC-------CccCCHh-------hHHHHHHHHHhc
Q 037911 265 KIEEE------GFDP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRR-------NVLPDLV-------TYTTLMNGLCKE 323 (609)
Q Consensus 265 ~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~-------~~~~ll~~~~~~ 323 (609)
++.+. +..| ...++..+...|...|++++|.+.++++.+. ...+... .+..+...+...
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 98765 2122 3457888899999999999999999998863 1111111 122222333444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 324 GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
+.+.++...+...... .+.+..++..+..+|.+.|++++|...+++.++
T Consensus 258 ~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566666666666543 133457788899999999999999999998875
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=1.7e-10 Score=113.40 Aligned_cols=225 Identities=9% Similarity=-0.061 Sum_probs=133.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCC-cc----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----C-CCHHHHHHHHH
Q 037911 355 YCKEGKMQESKSLLYEMMGNGI-YP----DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGV-----S-ISRDIYDYLIV 423 (609)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~-~~~~~~~~ll~ 423 (609)
+...|++++|...+++..+... .+ ...++..+...|...|+++.|+..+++..+... . ....++..+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3445555555555555543210 01 123344455555555555555555554433210 0 01234445555
Q ss_pred HHHhcCChHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 037911 424 ALCQDNRPFAATSLLERIGQ----DGYV-PSLEIYNELMESLCKCDSVADALLLKDEMVD-----RNIKPSLSTYRALIC 493 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~li~ 493 (609)
++...|++++|...+++... .+.. ....++..+...|...|++++|...+++..+ ... ....++..+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHH
Confidence 55666666666665555422 1111 1234567777888888888888888888776 332 22566777888
Q ss_pred HHhcCCCHhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCC-hhcHHHHHHHH
Q 037911 494 CFCGIGRSGEAVSLMDEMLESG----MLPDSQICRVLINGYCMEKD---VNKAEALLGFFAKKFQIYD-TESYNAVFNMF 565 (609)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 565 (609)
++.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|...++.. +..++ ...+..+...|
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHH
Confidence 8888888888888888887631 11223345666667777777 66676666652 22222 24567788888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 037911 566 AEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~ 583 (609)
...|++++|.+.|+++.+
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999888864
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=6.8e-10 Score=108.88 Aligned_cols=272 Identities=10% Similarity=0.105 Sum_probs=175.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCH----HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCc---HHhH
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKPTS----SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHS---VDVF 166 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~ 166 (609)
.+.+.+....|+++.|+..++.+..... ..+. .++..+...+...|++++|...+++.....+..+.. ...+
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445566678999999999999887432 2222 256777888899999999999999998763332222 1223
Q ss_pred HHHhhccccchhHHHHhCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--
Q 037911 167 QDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV----GFQ--P-SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGIC-- 237 (609)
Q Consensus 167 ~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-- 237 (609)
..+.. .+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.....-.
T Consensus 97 ~~la~-------~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 97 IQQSE-------ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHH-------HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 44444 789999999999999988752 221 2 2345666778888889999999998887653211
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHhHH----HHHHHHHhcCCHhHHHHHHHHHhhCCccCC
Q 037911 238 P--NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD--LVTYN----TLISSYCKKGRLNDAFYLYRIMYRRNVLPD 309 (609)
Q Consensus 238 ~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 309 (609)
+ ...++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+.
T Consensus 170 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 1 234566777788888888888888887765321111 11111 223446678888888888877765432211
Q ss_pred ---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 310 ---LVTYTTLMNGLCKEGKVREAHQLFHRMVHR----GLSPDI-VSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 310 ---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
...+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 223455666777777777777777766432 211122 2444455556666777777766666553
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=3.6e-10 Score=111.04 Aligned_cols=243 Identities=9% Similarity=0.007 Sum_probs=113.0
Q ss_pred CCHHhHHHHHHHH--HhCCChhHHHHHHHHHHHhhCCCCCcH--HhHHHHhhccccchhHHHHhCCHHHHH---------
Q 037911 124 PTSSNYCLIVHIL--AWNNKFSFAMKMLCELVELVKDCPHSV--DVFQDLISCTEDCNWAYVKVGLIRESF--------- 190 (609)
Q Consensus 124 ~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~g~~~~A~--------- 190 (609)
|+...-..+-..| ...+++++|..+++++.+.......+. ..|-.++... ...-.+.++.+.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r-----~~~~~~~~~~~~~~~~~~~~~ 82 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFR-----HQLMLDYLEPGKTYGNRPTVT 82 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHH-----HHHHHHTCCC--------CHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-----HHHHHhhcCcccccccccchH
Confidence 3444444455555 678899999999998876543322222 2333333210 011111111111
Q ss_pred HHHHHHHhCCCCCC-HH---HHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCChHHHHH
Q 037911 191 KTFRKTLDVGFQPS-IV---SCNFLLNGLLKLNCIDQCWQVYEEMGRIGI-CPN----THTFNILTHVFCKNGDVDKVNG 261 (609)
Q Consensus 191 ~~~~~~~~~~~~~~-~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~ 261 (609)
+.++.+.....+.+ .. .+......+...|++++|...|++..+... .++ ..++..+...|...|++++|..
T Consensus 83 ~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~ 162 (378)
T 3q15_A 83 ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY 162 (378)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 33333322110001 00 122233344566777777777766654210 011 3445556666666666666666
Q ss_pred HHHHHHHcCC-----CC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC----Ccc-CCHhhHHHHHHHHHhcCCHHHHH
Q 037911 262 FLEKIEEEGF-----DP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRR----NVL-PDLVTYTTLMNGLCKEGKVREAH 330 (609)
Q Consensus 262 ~~~~~~~~~~-----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~ll~~~~~~~~~~~a~ 330 (609)
.+++..+... .+ ...+++.+...|...|++++|++.|++..+. +.. ....++..+...+...|++++|.
T Consensus 163 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 6665543200 00 1234555555666666666666666555431 100 01234444555555555555555
Q ss_pred HHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 331 QLFHRMVH-----RGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 331 ~~~~~m~~-----~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
..+++..+ .. +....++..+...+.+.|++++|...+++..
T Consensus 243 ~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 243 EHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555544 21 1113444445555555555555555555544
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=7.6e-10 Score=108.53 Aligned_cols=274 Identities=12% Similarity=0.050 Sum_probs=168.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCc--HHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC-CCC
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHS--VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF-QPS 204 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 204 (609)
.+......+...|++++|...+++.+...+...+. ...+..+.. .|...|++++|...+++..+... ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGE-------VLHCKGELTRSLALMQQTEQMARQHDV 88 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH-------HHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 34555667788999999999999998763211110 113444444 78889999999999998875211 111
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 037911 205 ----IVSCNFLLNGLLKLNCIDQCWQVYEEMGRI----GIC--P-NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDP 273 (609)
Q Consensus 205 ----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 273 (609)
..++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 223566777788889999998888877542 211 2 23455667777888888888888888876542211
Q ss_pred ----CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCH-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037911 274 ----DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDL-VTYT-----TLMNGLCKEGKVREAHQLFHRMVHRGLSP 343 (609)
Q Consensus 274 ----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 343 (609)
...++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+
T Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 248 (373)
T 1hz4_A 169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 248 (373)
T ss_dssp CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc
Confidence 2345666777778888888888888777643111111 1111 22233567788888888777766532111
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCccCH-HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 344 ---DIVSYNTLIFAYCKEGKMQESKSLLYEMMGN----GIYPDT-FTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 344 ---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
....+..+...+...|++++|...+++.... |..++. ..+..+...+...|+.++|...+++...
T Consensus 249 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1223455666677777777777777766432 211122 2444455556666666666666665543
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=8.2e-11 Score=123.78 Aligned_cols=166 Identities=11% Similarity=0.102 Sum_probs=144.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
++.+|+.+..++.+.|++++|++.|+++++. .|.....+..+.. .|.+.|++++|++.|+++++.. +.+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~-------~l~~~g~~~eA~~~~~~Al~l~-P~~ 76 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLAS-------VLQQQGKLQEALMHYKEAIRIS-PTF 76 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 5788999999999999999999999999987 4667888888888 8999999999999999999865 556
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
..+|+.+..++.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|++..+.. +-+...+..+..+
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhH
Confidence 8899999999999999999999999988753 3457889999999999999999999999998874 2357789999999
Q ss_pred HHhcCCHhHHHHHHHHHhh
Q 037911 285 YCKKGRLNDAFYLYRIMYR 303 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~ 303 (609)
+...|++++|.+.+++..+
T Consensus 155 l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 9999999999988888764
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=1.2e-10 Score=122.42 Aligned_cols=170 Identities=17% Similarity=0.169 Sum_probs=150.0
Q ss_pred CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 037911 158 DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGIC 237 (609)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 237 (609)
..|.+.+.+..+.. .|.+.|++++|++.|+++++.. +-+..+|+.+..+|.+.|++++|++.|++..+.. +
T Consensus 4 s~P~~a~al~nLG~-------~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P 74 (723)
T 4gyw_A 4 SCPTHADSLNNLAN-------IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-P 74 (723)
T ss_dssp --CHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred CCCCcHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 35778888999988 9999999999999999999865 5578899999999999999999999999998853 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHH
Q 037911 238 PNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLM 317 (609)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 317 (609)
-+...|..+..++.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.... +...|..+.
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~ 152 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLA 152 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhh
Confidence 457899999999999999999999999999874 336789999999999999999999999999987554 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 037911 318 NGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~m~~ 338 (609)
..+...|++++|.+.+++..+
T Consensus 153 ~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 153 HCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHTTCCTTHHHHHHHHHH
T ss_pred hHHHhcccHHHHHHHHHHHHH
Confidence 999999999999998888765
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=3.3e-10 Score=98.46 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=82.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~ 94 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDL 94 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHH
Confidence 5566666666666666665533 3345555566666666666666666666655432 2344555555555555556666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|...++++.
T Consensus 95 A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 95 AVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555442 223444555555555555555555555555443221 33444445555555555555555555444
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=2.9e-10 Score=98.82 Aligned_cols=166 Identities=16% Similarity=0.086 Sum_probs=124.1
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...|..++..+...|++++|...++++.+. .|.+...+..+.. .|...|++++|...++++.+.. +.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~A~~~~~~~~~~~-~~~~ 76 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA---DAFDVDVALHLGI-------AYVKTGAVDRGTELLERSLADA-PDNV 76 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT---TSCCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CccChHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 445666777777888888888888777643 3455666666666 7778888888888888877754 4567
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSY 285 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 285 (609)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 154 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHH
Confidence 777777788888888888888888876642 4466777778888888888888888888877764 33567788888888
Q ss_pred HhcCCHhHHHHHHHHHhhC
Q 037911 286 CKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~~~~ 304 (609)
...|++++|.+.+++..+.
T Consensus 155 ~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 155 EQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc
Confidence 8888888888888887654
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=4.8e-11 Score=111.87 Aligned_cols=230 Identities=16% Similarity=0.115 Sum_probs=163.0
Q ss_pred cCCChhHHHHHHHHhhhc------CCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhh-----CCCCCcHHhHHHHh
Q 037911 102 CQSDSVSALTFFNWVKND------LEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELV-----KDCPHSVDVFQDLI 170 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~ 170 (609)
..++++.|+.+|+.+... ...+....++..++.++...|++++|...++++++.. +..+.....+..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 346777777777777652 1223367889999999999999999999999998763 23345566777777
Q ss_pred hccccchhHHHHhCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CCC
Q 037911 171 SCTEDCNWAYVKVGLIRESFKTFRKTLDV------G-FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI------GIC 237 (609)
Q Consensus 171 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~ 237 (609)
. .|...|++++|++.|+++.+. . .+....++..+...+...|++++|...+++..+. +..
T Consensus 93 ~-------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 93 V-------LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp H-------HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred H-------HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 7 899999999999999999864 1 1334667888999999999999999999998764 112
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCCC-HHhHHHHHHHHHhcCCH------hHHHHHHHHHh
Q 037911 238 P-NTHTFNILTHVFCKNGDVDKVNGFLEKIEEE-------GFDPD-LVTYNTLISSYCKKGRL------NDAFYLYRIMY 302 (609)
Q Consensus 238 ~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~-~~~~~~li~~~~~~g~~------~~a~~~~~~~~ 302 (609)
| ...++..+...+...|++++|...+++..+. ...+. ...+..+...+...+.. ..+...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 2 3567888999999999999999999998764 11222 22344443444433332 22222222222
Q ss_pred hCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 303 RRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 303 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
.. ......++..+...+...|++++|..+|++..+.
T Consensus 246 ~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 1224567888999999999999999999988753
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=1.2e-09 Score=98.84 Aligned_cols=195 Identities=8% Similarity=-0.013 Sum_probs=136.3
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP 203 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (609)
.++..+...+..+...|++++|...|+++++..+ +.+...+..+.. .|...|++++|++.|++..+.. +.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~-------~~~~~~~~~~A~~~~~~al~~~-p~ 74 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--NQDSVTAYNCGV-------CADNIKKYKEAADYFDIAIKKN-YN 74 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHTT-CS
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--CCCcHHHHHHHH-------HHHHhhcHHHHHHHHHHHHHhC-cc
Confidence 4567888888888888888888888888887621 144555555666 7888888888888888888765 34
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT-------HTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD-- 274 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 274 (609)
+...|..+..++...|++++|...|++..+.. +.+. ..|..+...+...|++++|++.|++..+. .|+
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~ 151 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKW 151 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcc
Confidence 56678888888888888888888888887642 2334 45677777788888888888888888876 344
Q ss_pred -HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 275 -LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 275 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
...+..+..+|...| ...++++...+.. +...|.... ....+.+++|...+++..+.
T Consensus 152 ~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 152 KTDALYSLGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 456667777775544 3344555444322 333343333 23446678888888888875
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.4e-09 Score=98.33 Aligned_cols=210 Identities=10% Similarity=-0.045 Sum_probs=162.3
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 378 PDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELM 457 (609)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|...+++..... +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35678888899999999999999999999988754678888889999999999999999999997765 34677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 037911 458 ESLCKCDSVADALLLKDEMVDRNIKPSL-------STYRALICCFCGIGRSGEAVSLMDEMLESGMLPD---SQICRVLI 527 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 527 (609)
..+...|++++|+..+++..+... .+. ..|..+...+...|++++|+..|+++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 999999999999999999987542 234 45777888889999999999999999864 555 45677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 528 NGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 528 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
.+|...| ..+++.+...+ ..+...|.... ....|.+++|+..+++.++. .|+......++..+.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHH
Confidence 7776544 44455555443 23344444333 34457789999999999966 787776666665543
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=2.4e-10 Score=107.00 Aligned_cols=206 Identities=18% Similarity=0.107 Sum_probs=124.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI------GI-CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE------ 269 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 269 (609)
....++..+...+...|++++|...+++..+. +- +....++..+...+...|++++|.+.+++..+.
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 34556777777777778888887777776543 11 223456777777778888888888877776654
Q ss_pred CC-CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC------CccC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 037911 270 GF-DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR------NVLP-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR-- 339 (609)
Q Consensus 270 ~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-- 339 (609)
.. +....++..+...|...|++++|+..+++..+. +-.| ...++..+...+...|++++|..+++++.+.
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11 123456777777888888888888888777654 1112 3456777778888888888888888877653
Q ss_pred -----CCCCCH-HHHHHHHHHHHHcCChH------HHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 340 -----GLSPDI-VSYNTLIFAYCKEGKMQ------ESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 340 -----g~~p~~-~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 407 (609)
...+.. ..+..+...+...+... .+...++.... ..+....++..+...|...|++++|..++++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 201 EKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112222 22333333332222222 22222221111 112234567778888888888888888888776
Q ss_pred HC
Q 037911 408 RF 409 (609)
Q Consensus 408 ~~ 409 (609)
+.
T Consensus 280 ~~ 281 (283)
T 3edt_B 280 RN 281 (283)
T ss_dssp TT
T ss_pred Hh
Confidence 53
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=2.5e-09 Score=100.63 Aligned_cols=140 Identities=10% Similarity=0.034 Sum_probs=77.8
Q ss_pred hhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCC--C-CcHHhHHHHhhccccchhHHHH
Q 037911 106 SVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDC--P-HSVDVFQDLISCTEDCNWAYVK 182 (609)
Q Consensus 106 ~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~~ 182 (609)
++.|...|+.+ +.++...|++++|...|+++++..... + .....+..+.. .|.+
T Consensus 33 ~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~-------~~~~ 89 (292)
T 1qqe_A 33 FEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYK-------CFKS 89 (292)
T ss_dssp HHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------HHHH
Confidence 66677666665 446777888888888888887653211 1 12456666666 7888
Q ss_pred hCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHH
Q 037911 183 VGLIRESFKTFRKTLDVGF---QP--SIVSCNFLLNGLLKL-NCIDQCWQVYEEMGRIGIC-PN----THTFNILTHVFC 251 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~ 251 (609)
.|++++|+..|++.++... .+ -..+++.+..+|... |++++|+..|++..+.... .+ ..++..+...+.
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 8888888888887765210 00 023444555555553 5555555555554431000 00 123444444444
Q ss_pred HcCChHHHHHHHHHHHH
Q 037911 252 KNGDVDKVNGFLEKIEE 268 (609)
Q Consensus 252 ~~g~~~~a~~~~~~~~~ 268 (609)
+.|++++|+..|++..+
T Consensus 170 ~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 44555555554444444
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=7.6e-10 Score=104.23 Aligned_cols=245 Identities=13% Similarity=0.030 Sum_probs=141.6
Q ss_pred HHHHHHHHHhhCCccCCHhhHHHHHHHHHhc--C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 293 DAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE--G-KVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLY 369 (609)
Q Consensus 293 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 369 (609)
+|.+++++..+. .++....| .++ +. + ++++|...|++. ...|...|++++|...|+
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF----SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc----CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 466666666654 22122223 222 32 2 477777777765 335667788888888887
Q ss_pred HHHHC----CCccC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037911 370 EMMGN----GIYPD-TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 370 ~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
+..+. |..++ ..+|+.+...|.+.|++++|+..+++..+. +...|++..+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~---------- 116 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FTHRGQFRRG---------- 116 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHH----------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHHcCCHHHH----------
Confidence 76542 21111 356777777777778888887777766542 1122221111
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCC
Q 037911 445 GYVPSLEIYNELMESLCKC-DSVADALLLKDEMVDRNIK-PS----LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLP 518 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 518 (609)
..+++.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|+..|+++.+.....
T Consensus 117 -----a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 117 -----ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp -----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred -----HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 23455666667764 7777777777776643110 01 2356667777777788888888877777643221
Q ss_pred CH------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh------hcHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 037911 519 DS------QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDT------ESYNAVFNMFA--EDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 519 ~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 584 (609)
.. ..+..+..++...|++++|...+++..+. .|+. ..+..++.++. ..+++++|++.|+++.
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~-- 267 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM-- 267 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS--
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC--
Confidence 11 14566677777778888888887777653 2221 12333445554 3466777777777665
Q ss_pred CCCCChhh
Q 037911 585 GFAPNNLT 592 (609)
Q Consensus 585 g~~p~~~~ 592 (609)
.+.|+...
T Consensus 268 ~l~~~~~~ 275 (292)
T 1qqe_A 268 RLDKWKIT 275 (292)
T ss_dssp CCCHHHHH
T ss_pred ccHHHHHH
Confidence 33554433
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=2.8e-09 Score=98.59 Aligned_cols=102 Identities=7% Similarity=-0.056 Sum_probs=56.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC--C
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF--Q 202 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~ 202 (609)
++..+..++..+.+.|++++|+..|+++++..+..+.....+..+.. .|.+.|++++|+..|+++++... +
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~-------~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLAR-------AYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH-------HHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 45555566666666666666666666666542222222445555555 56666666666666666665321 1
Q ss_pred CCHHHHHHHHHHHHh--------cCChHHHHHHHHHHhh
Q 037911 203 PSIVSCNFLLNGLLK--------LNCIDQCWQVYEEMGR 233 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~--------~~~~~~a~~~~~~m~~ 233 (609)
....++..+..++.. .|++++|...|+++.+
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 113344555555555 6666666666666654
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.07 E-value=1e-08 Score=91.01 Aligned_cols=165 Identities=11% Similarity=0.015 Sum_probs=98.7
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHH----------------HhhccccchhHHHHhCCHHHH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQD----------------LISCTEDCNWAYVKVGLIRES 189 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~~~g~~~~A 189 (609)
...+...+..+...|++++|+..|+++++. .|.+...+.. +.. .|.+.|++++|
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~-------~~~~~g~~~~A 73 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELAL-------AYKKNRNYDKA 73 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHH-------HHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHH-------HHHHCCCHHHH
Confidence 445555667777888888888888888876 3344444444 444 67777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHH
Q 037911 190 FKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD--VDKVNGFLEKIE 267 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~ 267 (609)
+..|++.++.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+...|...|+ .+.+...++...
T Consensus 74 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 74 YLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 77777777654 4456667777777777777777777777776642 3345566666666554443 333444444433
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 268 EEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 268 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
. ..|....+.....++...|++++|+..|++..+.
T Consensus 152 ~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 152 S--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred C--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1 1222223333444555566666666666666654
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=6.6e-08 Score=89.01 Aligned_cols=242 Identities=10% Similarity=-0.007 Sum_probs=149.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
...-.|.+..++.-..++.. ......--.+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 45567888888874433221 22233444456778777776631 11234433444444333 222
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCc-cCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNV-LPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
|+..+++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 44556666777888888888888888888766553 1256677778888888888888888888887
Q ss_pred HCCCCC-----CHHHHHHHHHHHH--HcC--ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 338 HRGLSP-----DIVSYNTLIFAYC--KEG--KMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 338 ~~g~~p-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
+. .| +..+...|..++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 55 2455555555533 233 788888888888765 45533444445577788888888888876554
Q ss_pred CC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037911 409 FG---------VSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 409 ~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
.. -+-++.++..++......|+ ++.+++.++...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 31 02245555455544445554 566666666554
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.06 E-value=1.7e-08 Score=90.91 Aligned_cols=188 Identities=13% Similarity=0.046 Sum_probs=100.8
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC-CC
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ-PS 204 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 204 (609)
+..+..++..+...|++++|+..|+++++..+..+.....+..+.. +|.+.|++++|+..|+++++.... +.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~-------~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIY-------AYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-------HHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 3445555555666666666666666666553333333344444554 566666666666666666553211 11
Q ss_pred H-HHHHHHHHHHH------------------hcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 205 I-VSCNFLLNGLL------------------KLNCIDQCWQVYEEMGRIGICPN-THTFNILTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 205 ~-~~~~~ll~~~~------------------~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (609)
. .++..+..++. ..|++++|...|+++.+.. |+ ...+...... ..+..
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~ 144 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKD 144 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHH
Confidence 1 12333333332 3566777777777776642 33 2222211110 00000
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037911 265 KIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPD--LVTYTTLMNGLCKEGKVREAHQLFHRMVHRG 340 (609)
Q Consensus 265 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 340 (609)
.+ ......+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 145 ~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 145 RL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00 01112455677778888888888888876532211 2456677788888888888888888777663
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=1.3e-08 Score=82.90 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037911 452 IYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYC 531 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 531 (609)
.+..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|..+++++.+.. +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 456677777778888888888888776532 356677777777888888888888888887643 445667777888888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 532 MEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
..|++++|.+.++.+.+.. +.+...+..++..+...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888887663 334567778888888888888888888888754
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=7.5e-09 Score=95.69 Aligned_cols=185 Identities=11% Similarity=0.033 Sum_probs=120.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhc
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKP-TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISC 172 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (609)
.-.+......|+++.|+..|+.+.......+ ...++..++.++.+.|++++|...|+.+++..+..+.....+..+..
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~- 97 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM- 97 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH-
Confidence 3444555667999999999999997532222 27889999999999999999999999999986555566677777777
Q ss_pred cccchhHHHH--------hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 037911 173 TEDCNWAYVK--------VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFN 244 (609)
Q Consensus 173 ~~~~~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 244 (609)
+|.. .|++++|+..|+++++.. +.+......+... ..+.. --...+.
T Consensus 98 ------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~~~~~----~~~~~~~ 152 (261)
T 3qky_A 98 ------CYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------RELRA----KLARKQY 152 (261)
T ss_dssp ------HHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------HHHHH----HHHHHHH
T ss_pred ------HHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------HHHHH----HHHHHHH
Confidence 7888 999999999999999854 2222232221110 00000 0011134
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhc----------CCHhHHHHHHHHHhhC
Q 037911 245 ILTHVFCKNGDVDKVNGFLEKIEEEGFDP--DLVTYNTLISSYCKK----------GRLNDAFYLYRIMYRR 304 (609)
Q Consensus 245 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 304 (609)
.+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|+..|+++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 45556666666666666666666542111 123455555555544 6666677777666654
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=9.7e-08 Score=87.91 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=35.7
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037911 364 SKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGV-SISRDIYDYLIVALCQDNRPFAATSLLERIG 442 (609)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 442 (609)
|...|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 22333334444555555555555555555444332 1233444444445555555555555555543
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=1.9e-08 Score=81.84 Aligned_cols=129 Identities=20% Similarity=0.274 Sum_probs=69.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVS 207 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 207 (609)
+|..++..+...|++++|..+++++.+. .|.+...+..+.. .+...|++++|+..++++.+.+ +.+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGN-------AYYKQGDYDEAIEYYQKALELD-PRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHH-------HHHHhcCHHHHHHHHHHHHHHC-CCchHH
Confidence 4555566666666666666666666554 2334444444544 5556666666666666665543 334445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 208 CNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEE 268 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 268 (609)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555555555555554432 22344444555555555555555555555443
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.01 E-value=4.5e-07 Score=91.43 Aligned_cols=377 Identities=8% Similarity=-0.081 Sum_probs=212.1
Q ss_pred CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhC-CCC
Q 037911 160 PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC-IDQCWQVYEEMGRI-GIC 237 (609)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~-~~~ 237 (609)
.....+|...+. ..-.|+++.+..+|++.+.. .|++..|...+....+.+. .+....+|+..... |..
T Consensus 12 ~~aR~vyer~l~--------~~P~~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d 81 (493)
T 2uy1_A 12 SSPSAIMEHARR--------LYMSKDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY 81 (493)
T ss_dssp CCHHHHHHHHHH--------HHHTTCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHH--------HCCCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC
Confidence 344566666664 33448888888888888873 4688888888877766653 35566777766542 422
Q ss_pred -CCHHHHHHHHHHHH----HcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhh
Q 037911 238 -PNTHTFNILTHVFC----KNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVT 312 (609)
Q Consensus 238 -~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 312 (609)
.+...|...+..+. ..|+.+.+..+|+.........-...|...... .+......+.+++.+..
T Consensus 82 ~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------- 150 (493)
T 2uy1_A 82 WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL---------- 150 (493)
T ss_dssp TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH----------
T ss_pred cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh----------
Confidence 35566666665433 235677788888887763211011122222111 11111222222222111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CC-----hHHHHHHHHHHHHCCCccCHHHHHH
Q 037911 313 YTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKE--GK-----MQESKSLLYEMMGNGIYPDTFTCQI 385 (609)
Q Consensus 313 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~-----~~~A~~~~~~~~~~~~~~~~~~~~~ 385 (609)
+.+..|..+++++...--..+...|...+.--... |- .+.+..+|++++.. .+.+...|..
T Consensus 151 -----------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ 218 (493)
T 2uy1_A 151 -----------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFF 218 (493)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHH
Confidence 12233333333333210001233444433332211 10 23456777777764 2345677777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHHhC-----C---CCCCHHHHHHH
Q 037911 386 IVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATS-LLERIGQD-----G---YVPSLEIYNEL 456 (609)
Q Consensus 386 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~-----~---~~~~~~~~~~l 456 (609)
.+..+.+.|+.++|..++++.... +.+...+. .|....+.++... +.+..... + .......|...
T Consensus 219 ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 219 YSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 777778888888888888888877 22322222 1222111111111 11111000 0 01123456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 037911 457 MESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG-IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKD 535 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 535 (609)
+....+.+..+.|..+|+.. .. ...+...|......-.. .++.+.|..+|+...+.- +-+...+...++...+.|+
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGD 369 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC
Confidence 77777788899999999999 32 22344444432222222 346999999999998742 3345566677887888999
Q ss_pred HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 536 VNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 536 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.+.|..+|+.+. .....|..++..-...|+.+.+.++++++..
T Consensus 370 ~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 370 EENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999873 2457788888877888999999999988874
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.01 E-value=4.5e-09 Score=111.19 Aligned_cols=177 Identities=11% Similarity=-0.058 Sum_probs=141.0
Q ss_pred HhCCChhHHHHHHHHHHH-----hhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037911 137 AWNNKFSFAMKMLCELVE-----LVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFL 211 (609)
Q Consensus 137 ~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (609)
...|++++|++.++++++ .....|.+...+..+.. .|...|++++|++.|+++.+.+ +.+...|..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~-------~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVR-------ALLDLGDVAKATRKLDDLAERV-GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHH-------HHHhcCCHHHHHHHHHHHhccC-cchHHHHHHH
Confidence 778999999999999981 11134667777888877 8999999999999999999865 5678899999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 037911 212 LNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRL 291 (609)
Q Consensus 212 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 291 (609)
..++...|++++|.+.|++..+.. +.+...+..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998753 3457788889999999999999 99999988774 33677888899999999999
Q ss_pred hHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC
Q 037911 292 NDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK 325 (609)
Q Consensus 292 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 325 (609)
++|++.|++..+.+.. +...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9999999988876433 35666667766655444
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.99 E-value=2.9e-09 Score=88.81 Aligned_cols=145 Identities=10% Similarity=0.098 Sum_probs=100.8
Q ss_pred HHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccc
Q 037911 97 RVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDC 176 (609)
Q Consensus 97 ~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (609)
+.+.+.+++.+.|+..|..+... .+.++..+..++.+|.+.|++++|++.|+++++. .|.+..++..+..
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~----- 73 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGL----- 73 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-----
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-----
Confidence 44556667888888888877642 2235667777888888888888888888888876 4566777777777
Q ss_pred hhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 037911 177 NWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQV-YEEMGRIGICPNTHTFNILTHVFCKNGD 255 (609)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 255 (609)
.|.+.|++++|+..|+++++.. +-+..+|..+...+.+.|++++|.+. +++..+.. +-+...|......+...|+
T Consensus 74 --~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 74 --LYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp --HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred --HHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 7888888888888888888764 44677777788888888887665554 46666532 3345566666655555553
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=7.9e-09 Score=109.33 Aligned_cols=175 Identities=14% Similarity=0.019 Sum_probs=145.1
Q ss_pred hcCCChhHHHHHHHHhhh-----c-CCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccc
Q 037911 101 RCQSDSVSALTFFNWVKN-----D-LEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTE 174 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~-----~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (609)
...+++++|++.|+.+.. . ...+.+...|..++.++...|++++|+..|+++++. .|.+...+..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~--- 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAV--- 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHH---
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHH---
Confidence 556899999999999981 0 123457789999999999999999999999999987 4567888888887
Q ss_pred cchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 037911 175 DCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 175 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 254 (609)
.|...|++++|++.|+++++.. +.+...|..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|
T Consensus 476 ----~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g 548 (681)
T 2pzi_A 476 ----AELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEG 548 (681)
T ss_dssp ----HHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred ----HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcC
Confidence 8999999999999999999865 4577889999999999999999 99999998753 446788999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCC
Q 037911 255 DVDKVNGFLEKIEEEGFDPD-LVTYNTLISSYCKKGR 290 (609)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 290 (609)
++++|++.|++..+. .|+ ...+..+..++...++
T Consensus 549 ~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 549 DRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999999998876 344 5677777777766554
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=6.1e-07 Score=83.54 Aligned_cols=173 Identities=9% Similarity=-0.008 Sum_probs=81.2
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCC--ChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHH
Q 037911 103 QSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNN--KFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180 (609)
Q Consensus 103 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (609)
....+.|+..++.++.. .+-...+|+.-..++...| ++++++++++.++.. .|.+..++..-.. .+
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---nPk~y~aW~~R~~-------iL 113 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD---NEKNYQIWNYRQL-------II 113 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---CTTCCHHHHHHHH-------HH
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---CcccHHHHHHHHH-------HH
Confidence 33445666666666642 1224455555556666555 666666666666654 2333333333222 22
Q ss_pred ----HHh---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 037911 181 ----VKV---GLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCID--QCWQVYEEMGRIGICPNTHTFNILTHVFC 251 (609)
Q Consensus 181 ----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 251 (609)
... +++++++++++++.+.. +.+..+|+.-..++.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 223 45555555555555543 445555555555555555544 5555555554432 234444444443333
Q ss_pred HcCC------hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 037911 252 KNGD------VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGR 290 (609)
Q Consensus 252 ~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 290 (609)
+.|+ ++++++.+++++... +-|...|+.+...+.+.|+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred hccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 3333 444444444444432 1234444444444444443
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.96 E-value=3.7e-08 Score=87.36 Aligned_cols=171 Identities=11% Similarity=0.108 Sum_probs=77.6
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+...|++++|+..|+++++.. +.+...|... .... ...........+..++.+.|++++
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~--------------~~~~~~~~~~~lg~~~~~~g~~~~ 72 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDK--------------NSEISSKLATELALAYKKNRNYDK 72 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCT--------------TSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcc--------------hhhhhHHHHHHHHHHHHHCCCHHH
Confidence 6789999999999999998854 2234444440 0000 000011112234444445555555
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC--HHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK--VREAHQLFHRM 336 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m 336 (609)
|+..|++..+.. +-+...+..+..++...|++++|+..|++..+..+. +..+|..+...+...|+ .+.+...++..
T Consensus 73 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 73 AYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 555555544442 123444455555555555555555555555444322 34444444444433322 22233333332
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 337 VHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 337 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
.. ..|....+..+..++...|++++|...|++.++
T Consensus 151 ~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 151 SS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp -C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred hC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 21 111112222233334444555555555555554
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=1.6e-07 Score=83.45 Aligned_cols=176 Identities=14% Similarity=0.043 Sum_probs=108.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 037911 399 ALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCD----SVADALLLKD 474 (609)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 474 (609)
|+..|++..+.| +...+..+...+...+++++|...+++..+.+ +...+..+...|.. + ++++|.++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444444444432 44455555555555555566666555555443 44555556666655 4 6777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhc----CCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc----cCCHHHHHHHHHH
Q 037911 475 EMVDRNIKPSLSTYRALICCFCG----IGRSGEAVSLMDEMLESGML-PDSQICRVLINGYCM----EKDVNKAEALLGF 545 (609)
Q Consensus 475 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 545 (609)
+..+.| +..++..|...|.. .+++++|+++|++..+.+.. .+...+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 776654 45666666666665 67777777777777754411 015666677777776 6677778777777
Q ss_pred HHHcCCCCChhcHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 037911 546 FAKKFQIYDTESYNAVFNMFAED-G-----DLSKLMELQKRFLRLGF 586 (609)
Q Consensus 546 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 586 (609)
..+. ..+...+..|...|... | ++++|+++|++..+.|.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7765 23444566666666543 3 77788888887777664
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.93 E-value=1.1e-06 Score=81.80 Aligned_cols=233 Identities=9% Similarity=0.030 Sum_probs=175.3
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----HHc---
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN--CIDQCWQVYEEMGRIGICPNTHTFNILTHVF----CKN--- 253 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~----~~~--- 253 (609)
....++|++.+++++..+ +-+..+|+.--.++...| ++++++++++.+.... +-+..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 334478999999999876 567778998888888888 9999999999998753 34455666554444 455
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHh--HHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC------
Q 037911 254 GDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLN--DAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK------ 325 (609)
Q Consensus 254 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~------ 325 (609)
+++++++++++++.+.. +.+..+|+.-.-.+.+.|.++ ++++.++++.+.++. |-..|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 78999999999999875 447788888888888888888 999999999988766 77888877777777776
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHCC--CccCHHHHHHHHHHHHccCCHHHHHHH
Q 037911 326 VREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQE-SKSLLYEMMGNG--IYPDTFTCQIIVQGYGKEGRLLSALNL 402 (609)
Q Consensus 326 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 402 (609)
++++++.++.+.... +-|...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|+++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 888999998888764 3477888888888888887444 455666655432 134667888888888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHH
Q 037911 403 VVELQRFGVSISRDIYDY 420 (609)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~ 420 (609)
++.+.+.--+.....|+.
T Consensus 281 ~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHTTCGGGHHHHHH
T ss_pred HHHHHhccChHHHHHHHH
Confidence 998876322334444443
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=1.4e-07 Score=83.78 Aligned_cols=177 Identities=7% Similarity=-0.003 Sum_probs=120.9
Q ss_pred HHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC---
Q 037911 108 SALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG--- 184 (609)
Q Consensus 108 ~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g--- 184 (609)
+|++.|+.+.. ..++.++..+...+...+++++|...|++..+. .+...+..+.. .|.. +
T Consensus 4 eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~~~a~~~lg~-------~y~~-~g~~ 66 (212)
T 3rjv_A 4 EPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GDGDALALLAQ-------LKIR-NPQQ 66 (212)
T ss_dssp CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCHHHHHHHHH-------HTTS-STTS
T ss_pred hHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHH-------HHHc-CCCC
Confidence 46677777775 256778888888888888888888888888765 24555555555 4555 5
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHH----cC
Q 037911 185 -LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK----LNCIDQCWQVYEEMGRIGIC-PNTHTFNILTHVFCK----NG 254 (609)
Q Consensus 185 -~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~----~g 254 (609)
++++|++.|++..+.| +..++..|...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+
T Consensus 67 ~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~ 143 (212)
T 3rjv_A 67 ADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE 143 (212)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence 7888888888887744 56677777777766 67788888888887775411 025666777777777 66
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-C-----CHhHHHHHHHHHhhCCc
Q 037911 255 DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK-G-----RLNDAFYLYRIMYRRNV 306 (609)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~~ 306 (609)
+.++|...|++..+. ..+...+..|...|... | +.++|+..|++..+.|.
T Consensus 144 d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 144 DDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp CHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777777777777665 22444556666666543 2 67777777777766553
No 106
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.93 E-value=6.6e-06 Score=82.91 Aligned_cols=203 Identities=11% Similarity=0.032 Sum_probs=112.0
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCC-hhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHH-
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNK-FSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYV- 181 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 181 (609)
++++.+..+|+.+... .|+...|...+.-..+.+. .+....+|+.++...+..+.+..++...+. .+.
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~-------f~~~ 97 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE-------EEGK 97 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH-------HTSS
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH-------HHHh
Confidence 7899999999999863 5799999999888877763 456788888888875556677788887775 221
Q ss_pred ---HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 182 ---KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 182 ---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
..|+.+.+.++|++++.... .+. +.-+.-|..+... .+..+...++.-. .+.+..
T Consensus 98 ~~~~~~~~~~vR~iy~rAL~~P~-~~~----------------~~lw~~Y~~fE~~---~~~~~~~~~~~~~--~~~y~~ 155 (493)
T 2uy1_A 98 IEDEQTRIEKIRNGYMRALQTPM-GSL----------------SELWKDFENFELE---LNKITGKKIVGDT--LPIFQS 155 (493)
T ss_dssp CSSHHHHHHHHHHHHHHHHTSCC-TTH----------------HHHHHHHHHHHHH---HCHHHHHHHHHHH--HHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHhChh-hhH----------------HHHHHHHHHHHHH---hccccHHHHHHHH--hHHHHH
Confidence 35678889999999987321 111 1112222222111 1111111121111 122333
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--C-----HhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKG--R-----LNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQ 331 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 331 (609)
|..+++.+...--..+...|...+..-...+ - .+.+..+|+++....+. +...|...+.-+.+.|+.++|..
T Consensus 156 ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~ 234 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKK 234 (493)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444443332100012334444443322111 0 23455666666654322 45566666666667777777777
Q ss_pred HHHHHHHC
Q 037911 332 LFHRMVHR 339 (609)
Q Consensus 332 ~~~~m~~~ 339 (609)
++++....
T Consensus 235 i~erAi~~ 242 (493)
T 2uy1_A 235 VVERGIEM 242 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 77777765
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=1.6e-08 Score=86.96 Aligned_cols=161 Identities=12% Similarity=-0.022 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVS 207 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 207 (609)
.+..++..+...|++++|...++++++. .|.+...+..+.. .|...|++++|+..|+++.+.. |+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~-------~~~~~g~~~~A~~~~~~a~~~~--p~~~~ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKAD-------CLLETKQFELAQELLATIPLEY--QDNSY 75 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHH-------HHHHTTCHHHHHHHHTTCCGGG--CCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHH-------HHHHCCCHHHHHHHHHHhhhcc--CChHH
Confidence 3445555566666666666666665544 2344555555555 5666666666666666655433 23332
Q ss_pred HHHHHHH-HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHhHHHHHHHH
Q 037911 208 CNFLLNG-LLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDP-DLVTYNTLISSY 285 (609)
Q Consensus 208 ~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 285 (609)
+..+... +...+....|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+..++
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence 2221111 111122223444455444421 2234444555555555555555555555554442111 123444455555
Q ss_pred HhcCCHhHHHHHHHHH
Q 037911 286 CKKGRLNDAFYLYRIM 301 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~ 301 (609)
...|+.++|...|++.
T Consensus 155 ~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 155 SALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHCSSCHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHH
Confidence 5555555555555443
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=1.9e-08 Score=86.60 Aligned_cols=155 Identities=13% Similarity=0.076 Sum_probs=98.0
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCChH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHV-FCKNGDVD 257 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~~ 257 (609)
.+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...+++.... .|+...+..+... +...++..
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhcccc
Confidence 6778888888888888877643 456777888888888888888888888887653 2344333222211 11222333
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC-CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 258 KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP-DLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
.|...+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...|++.
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4566666666552 2245666666677777777777777777766654432 2345666666666677777776666655
Q ss_pred H
Q 037911 337 V 337 (609)
Q Consensus 337 ~ 337 (609)
.
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=8.3e-08 Score=89.84 Aligned_cols=167 Identities=10% Similarity=-0.011 Sum_probs=108.5
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
+.+...+..++..+...|++++|...|+++++. .|.+...+..+.. .|.+.|++++|+..++++.+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~-------~~~~~g~~~~A~~~l~~~~~~~-- 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAE-------TLIALNRSEDAEAVLXTIPLQD-- 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHH-------HHHHTTCHHHHHHHHTTSCGGG--
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHH-------HHHHCCCHHHHHHHHHhCchhh--
Confidence 345566677777777778888888888777765 4556666666766 7777788888888777776643
Q ss_pred CCHHHHHHHH-HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHhHHH
Q 037911 203 PSIVSCNFLL-NGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFD-PDLVTYNT 280 (609)
Q Consensus 203 ~~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 280 (609)
|+........ ..+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+.... .+...+..
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 4443332222 23555666677777777766542 345666677777777777777777777777765311 11456666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHh
Q 037911 281 LISSYCKKGRLNDAFYLYRIMY 302 (609)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~~~ 302 (609)
++..+...|+.++|...|++..
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 7777777777777776666543
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=1.3e-07 Score=85.05 Aligned_cols=181 Identities=12% Similarity=0.044 Sum_probs=126.4
Q ss_pred HHHhcCCChhHHHHHHHHhhhcCCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccc
Q 037911 98 VLLRCQSDSVSALTFFNWVKNDLEIKP-TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDC 176 (609)
Q Consensus 98 ~l~~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (609)
......|+++.|+..|+.+.......+ ....+..++.++.+.|++++|+..|+++++..+..+.....+..+..
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~----- 86 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL----- 86 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH-----
Confidence 344556899999999999997533333 35788999999999999999999999999885554433334444443
Q ss_pred hhHHHH------------------hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 037911 177 NWAYVK------------------VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICP 238 (609)
Q Consensus 177 ~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 238 (609)
+|.. .|++++|+..|+++++.. +-+..++....... .+...+.
T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~------ 147 (225)
T 2yhc_A 87 --TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA------ 147 (225)
T ss_dssp --HHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH------
T ss_pred --HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH------
Confidence 3433 678999999999999854 33333333221110 0111110
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCc
Q 037911 239 NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD----LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNV 306 (609)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 306 (609)
.....+...+.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|+.++|.+.++.+...++
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 112345677888999999999999988763 33 24677888899999999999999998887654
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=1e-08 Score=85.42 Aligned_cols=142 Identities=10% Similarity=-0.023 Sum_probs=67.6
Q ss_pred HHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037911 135 ILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNG 214 (609)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 214 (609)
++...|++++|+..++..... .|.....+..+.. .|.+.|++++|++.|+++++.. +.+..+|..+..+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~-------~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAK-------LYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLL 74 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 333445555555555554422 2222333334444 5555666666666666555543 3345555555555
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 037911 215 LLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNG-FLEKIEEEGFDPDLVTYNTLISSYCKKG 289 (609)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g 289 (609)
+.+.|++++|...|++..+.. +-+...+..+...|.+.|++++|.+ .+++..+.. +-+..+|......+...|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 555555555555555555432 2234455555555555555544333 234444432 123344444444444333
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=9.2e-08 Score=90.61 Aligned_cols=199 Identities=11% Similarity=0.032 Sum_probs=113.1
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037911 139 NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL 218 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 218 (609)
.|++++|.+++++..+..+.. +. ...+++++|...|+++ ...|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---------~~----------~~~~~~~~A~~~~~~a---------------~~~~~~~ 49 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---------FM----------KWKPDYDSAASEYAKA---------------AVAFKNA 49 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------SS----------SCSCCHHHHHHHHHHH---------------HHHHHHT
T ss_pred cchHHHHHHHHHHHHHHcccc---------cc----------CCCCCHHHHHHHHHHH---------------HHHHHHc
Confidence 456778888888777653210 11 1135666666666654 3345566
Q ss_pred CChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHhHHHHHHHHHhc
Q 037911 219 NCIDQCWQVYEEMGRI----GICP-NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGF---DPD--LVTYNTLISSYCKK 288 (609)
Q Consensus 219 ~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~~~~~li~~~~~~ 288 (609)
|++++|...|.+..+. +-.. -..+|+.+...|.+.|++++|+..+++..+.-. .+. ..+++.+...|..
T Consensus 50 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~- 128 (307)
T 2ifu_A 50 KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP- 128 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-
Confidence 7777777776665432 1000 134566666677777777777777776544310 111 2456666666666
Q ss_pred CCHhHHHHHHHHHhhCCccC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHc
Q 037911 289 GRLNDAFYLYRIMYRRNVLP-----DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR----GLSPD-IVSYNTLIFAYCKE 358 (609)
Q Consensus 289 g~~~~a~~~~~~~~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~ 358 (609)
|++++|+..|++..+..... ...++..+...+.+.|++++|...|++..+. +..+. ...+..+..++...
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence 77777777777665421110 1345666666777777777777777766542 11111 12444555555666
Q ss_pred CChHHHHHHHHHHH
Q 037911 359 GKMQESKSLLYEMM 372 (609)
Q Consensus 359 g~~~~A~~~~~~~~ 372 (609)
|++++|...|++.+
T Consensus 209 g~~~~A~~~~~~al 222 (307)
T 2ifu_A 209 ADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 77777777777666
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=8.4e-08 Score=89.81 Aligned_cols=167 Identities=13% Similarity=0.070 Sum_probs=111.0
Q ss_pred CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 037911 160 PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN 239 (609)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 239 (609)
|.+...+..+.. .+.+.|++++|+..|+++.+.. +.+...+..+...+.+.|++++|...++++... .|+
T Consensus 114 p~~~~~~~~~a~-------~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~ 183 (287)
T 3qou_A 114 PREEELXAQQAM-------QLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQD 183 (287)
T ss_dssp CCHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCS
T ss_pred CCchhhHHHHHH-------HHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcc
Confidence 455555666665 6778888888888888887754 456677777778888888888888888877653 344
Q ss_pred HHHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC-CHhhHHHHH
Q 037911 240 THTFNI-LTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP-DLVTYTTLM 317 (609)
Q Consensus 240 ~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll 317 (609)
...... ....+...++.+.|...+++..... +.+...+..+...+...|++++|+..|+++.+..... +...+..++
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 433222 2223556666777777777776653 3356667777777777777777777777777654321 245666777
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 037911 318 NGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~m~ 337 (609)
..+...|+.++|...|++..
T Consensus 263 ~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHH
Confidence 77777777777776666544
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=7.3e-08 Score=100.15 Aligned_cols=156 Identities=10% Similarity=-0.035 Sum_probs=119.4
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037911 139 NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL 218 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 218 (609)
.|++++|.+.++++++. .|.+...+..+.. .|...|++++|++.|++..+.. +.+...+..+..++...
T Consensus 2 ~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~-------~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---RPQDFVAWLMLAD-------AELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQ 70 (568)
T ss_dssp ----------------------CCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 47888999999988865 4567788888887 8999999999999999999865 55788999999999999
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCHhHHH
Q 037911 219 NCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK---GRLNDAF 295 (609)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~ 295 (609)
|++++|.+.|++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.
T Consensus 71 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHH
Confidence 99999999999998753 4467889999999999999999999999998874 33577888999999999 9999999
Q ss_pred HHHHHHhhCCcc
Q 037911 296 YLYRIMYRRNVL 307 (609)
Q Consensus 296 ~~~~~~~~~~~~ 307 (609)
+.+++..+.+..
T Consensus 149 ~~~~~al~~~p~ 160 (568)
T 2vsy_A 149 AQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHhcCCc
Confidence 999999886543
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=7e-08 Score=91.45 Aligned_cols=93 Identities=9% Similarity=0.050 Sum_probs=52.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhCCCC---CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC----CCCC-
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVKDCP---HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV----GFQP- 203 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~- 203 (609)
.+.++...|++++|...+.++.+...... .....+..+.. .|...|++++|+..|++.++. |-..
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~-------~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 114 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM-------MLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 35567778888888888887776532211 11334555555 677777777777777776542 1000
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
-..+++.+..+|.. |++++|++.|++..
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 12344445555555 55555555555543
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=1.4e-07 Score=97.93 Aligned_cols=154 Identities=10% Similarity=-0.039 Sum_probs=119.6
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGF 262 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (609)
.|++++|++.|+++.+.. +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998764 4568899999999999999999999999998863 44678899999999999999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 037911 263 LEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE---GKVREAHQLFHRMVHR 339 (609)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~~ 339 (609)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.... +...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 336788999999999999999999999999887543 677888999999999 9999999999999876
Q ss_pred C
Q 037911 340 G 340 (609)
Q Consensus 340 g 340 (609)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=5e-07 Score=80.25 Aligned_cols=88 Identities=11% Similarity=-0.014 Sum_probs=41.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 037911 421 LIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGR 500 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 500 (609)
+...+...|++++|...+++.. .|+...+..+...+.+.|++++|+..|++..+... .+...|..+..++...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHccc
Confidence 3444444555555555544432 23444455555555555555555555555444321 233444444455555555
Q ss_pred HhHHHHHHHHHHH
Q 037911 501 SGEAVSLMDEMLE 513 (609)
Q Consensus 501 ~~~A~~~~~~~~~ 513 (609)
+++|+..++++.+
T Consensus 87 ~~~A~~~~~~al~ 99 (213)
T 1hh8_A 87 YDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=1.1e-05 Score=75.97 Aligned_cols=135 Identities=8% Similarity=-0.045 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChH------
Q 037911 186 IRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL-N-CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVD------ 257 (609)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~------ 257 (609)
++++++.++.++... +.+..+|+.-..++... + +.++++++++++.+.. +-|..+|+.-...+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhh
Confidence 555555555555433 34444555444444443 3 4455555555554432 233444444333333333333
Q ss_pred --HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-------HhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcC
Q 037911 258 --KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGR-------LNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEG 324 (609)
Q Consensus 258 --~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 324 (609)
++++.++++.+.. .-|..+|+.....+.+.++ ++++++.+++.....+. |...|+.+-..+.+.|
T Consensus 183 ~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 183 WGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 5555555555543 2245555555555544443 45555555555554433 5555554444444433
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=1.7e-06 Score=81.19 Aligned_cols=162 Identities=8% Similarity=0.019 Sum_probs=112.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 037911 422 IVALCQDNRPFAATSLLERIGQDGY-VPSL----EIYNELMESLCKCDSVADALLLKDEMVDRNIK-PS----LSTYRAL 491 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 491 (609)
+..+...|++++|...+++...... .++. ..+..+...+...|++++|+..+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777766644321 1221 13344666677778899999999888874221 22 2368888
Q ss_pred HHHHhcCCCHhHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC----CCC-hhcHHH
Q 037911 492 ICCFCGIGRSGEAVSLMDEMLES-----GMLPD-SQICRVLINGYCMEKDVNKAEALLGFFAKKFQ----IYD-TESYNA 560 (609)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~ 560 (609)
..+|...|++++|+..++++.+. +..+. ..++..+...|.+.|++++|...+++..+... .+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88899999999999999888741 11111 23678889999999999999999887775321 122 467888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHH
Q 037911 561 VFNMFAEDGD-LSKLMELQKRFLR 583 (609)
Q Consensus 561 l~~~~~~~g~-~~~A~~~~~~m~~ 583 (609)
+..+|.+.|+ +++|.+.+++.+.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999994 6999999988864
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.71 E-value=4.8e-07 Score=72.50 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=68.2
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...+...+..+.+.|++++|++.|+++++. .|.+..++..+.. +|.+.|++++|+..|++.++.+ +.+.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~-------~~~~~~~~~~A~~~~~~al~~~-p~~~ 81 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAA-------CLTKLMEFQRALDDCDTCIRLD-SKFI 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhh-------HHHhhccHHHHHHHHHHHHHhh-hhhh
Confidence 345556667777777777777777777765 4556666666666 6777777777777777777654 4556
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
..|..+..++...|++++|.+.|++..+.
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67777777777777777777777777663
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=5.5e-07 Score=72.16 Aligned_cols=104 Identities=10% Similarity=-0.023 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 037911 487 TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFA 566 (609)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 566 (609)
.+......|.+.|++++|++.|+++++.. +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45555666667777777777777766543 3456666677777777777777777777766653 334456777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037911 567 EDGDLSKLMELQKRFLRLGFAPNNLTCK 594 (609)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 594 (609)
..|++++|++.|++.++. .|+.....
T Consensus 93 ~~~~~~~A~~~~~~al~l--~P~~~~a~ 118 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV--DPSNEEAR 118 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--CcCCHHHH
Confidence 777777777777777754 55554433
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=1.1e-07 Score=88.52 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=75.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...+..++..+...|++++|+..|+++++. .|.+...+..+.. .|.+.|++++|+..++++++.. +.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~-------~~~~~~~~~~A~~~~~~al~~~-p~~ 71 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRAL-------CYLKMQQPEQALADCRRALELD-GQS 71 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHTTSC-TTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 4567777788888888888888888888876 4456677777776 7888888888888888887754 456
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
...+..+..++...|++++|...|++..+
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777778888888888888888877755
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=1.7e-06 Score=78.62 Aligned_cols=194 Identities=9% Similarity=-0.024 Sum_probs=120.7
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC-------------
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS------------- 204 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------- 204 (609)
..++...|.+.|.++.+. .|...+.+..++.|-......+.+.++..+++..+.+..+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~---dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY---DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHh---ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccc
Confidence 468888899999999876 56778888888655444444666777777777777766551 111
Q ss_pred ---------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-
Q 037911 205 ---------IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD- 274 (609)
Q Consensus 205 ---------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 274 (609)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 1233345566777778888888777776543 433355555556777777777777776444321 111
Q ss_pred -HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 275 -LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPD--LVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 275 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 22455566667777777777777776664322132 224445555666677777777777776664
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=8.5e-06 Score=76.40 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=41.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc-cC----HHHHHHH
Q 037911 317 MNGLCKEGKVREAHQLFHRMVHRG-LSPDI----VSYNTLIFAYCKEGKMQESKSLLYEMMGNGIY-PD----TFTCQII 386 (609)
Q Consensus 317 l~~~~~~~~~~~a~~~~~~m~~~g-~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 386 (609)
+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|...++++++.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 344455555555555555555431 11111 11222333444445555555555555542111 11 1234555
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 037911 387 VQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~ 407 (609)
...|...|++++|+..++++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555443
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.66 E-value=1.1e-06 Score=74.23 Aligned_cols=129 Identities=10% Similarity=0.072 Sum_probs=70.0
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..+..++..+...|++++|...++++++. .|.+..++..+.. .+...|++++|+..+++..+.. +.+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~a~~~~-~~~~ 81 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSL-------AYLRTECYGYALGDATRAIELD-KKYI 81 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-cccH
Confidence 344555666666666666666666666654 2334555555555 5666666666666666666543 3345
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNI--LTHVFCKNGDVDKVNGFLEKI 266 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~ 266 (609)
..|..+..++...|++++|...|++..+.. +.+...+.. ++..+...|++++|.+.+...
T Consensus 82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 82 KGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 555556666666666666666666655432 122233322 222244455555555555443
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=5.3e-07 Score=74.59 Aligned_cols=98 Identities=10% Similarity=0.012 Sum_probs=63.7
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...+..+...+.+.|++++|...|+.++.. .|.+...+..+.. +|...|++++|+..|+++.+.. +.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~-------~~~~~g~~~~Ai~~~~~al~l~-P~~ 103 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAA-------IYQIKEQFQQAADLYAVAFALG-KND 103 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHS-SSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHHccHHHHHHHHHHHHhhC-CCC
Confidence 4556666666666777777777777776655 3455666666665 6666777777777777766654 345
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
...|..+..+|...|++++|...|++..+
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666666666665
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=2.5e-06 Score=75.62 Aligned_cols=127 Identities=6% Similarity=-0.094 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 037911 208 CNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK 287 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 287 (609)
+..+...+...|++++|.+.|++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344555666677777777666553 3466666666666777777777777777666553 2345566666677777
Q ss_pred cCCHhHHHHHHHHHhhCCcc--------------C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 288 KGRLNDAFYLYRIMYRRNVL--------------P-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 288 ~g~~~~a~~~~~~~~~~~~~--------------p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
.|++++|++.|++..+.... | ....+..+..++.+.|++++|...|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777777776654221 1 1245666677777777777777777777665
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.65 E-value=1.9e-05 Score=74.22 Aligned_cols=223 Identities=9% Similarity=0.043 Sum_probs=155.2
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-C-ChHH
Q 037911 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN-CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN-G-DVDK 258 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 258 (609)
+.+..++|+++++++++.+ +-+..+|+.--.++...| .+++++++++.+.... +-+..+|+.-...+.+. + +.++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3445578999999999876 567778998888888888 5999999999998864 45677788777777776 7 8899
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHh--------HHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC-----
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLN--------DAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK----- 325 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----- 325 (609)
++++++++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+.++. |...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 999999999875 346777777666666666666 899999999987766 78888888877777775
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHHCC-----Ccc
Q 037911 326 --VREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKM--------------------QESKSLLYEMMGNG-----IYP 378 (609)
Q Consensus 326 --~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~ 378 (609)
++++++.++++.... +-|...|+.+-..+.+.|.. ........++...+ -.+
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 678888888887753 33667777766666666553 11122222222111 023
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 037911 379 DTFTCQIIVQGYGKEGRLLSALNLVVELQRF 409 (609)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (609)
.......++..|...|+.++|.++++.+.+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 4555666666666666666666666666543
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=2.7e-06 Score=79.84 Aligned_cols=128 Identities=7% Similarity=0.009 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhcCCCHhHHHHHHHHHHHC--CCCCC----HHHH
Q 037911 455 ELMESLCKCDSVADALLLKDEMVDRNI---KPS--LSTYRALICCFCGIGRSGEAVSLMDEMLES--GMLPD----SQIC 523 (609)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~ 523 (609)
.+...+...|++++|+..+++..+... .+. ..+|+.+...|...|++++|+..++++.+. ....+ ..++
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 355556677788888888887764321 111 346777788888888888888888887631 11111 2477
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCC----CC-ChhcHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037911 524 RVLINGYCMEKDVNKAEALLGFFAKKFQ----IY-DTESYNAVFNMFAEDGDLSKL-MELQKRFL 582 (609)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 582 (609)
..++..|...|++++|...+++..+... .. -..+|..+..+|.+.|++++| ...+++.+
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 7888888888888888888887764321 11 145677788888888888888 67677765
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=2.6e-07 Score=79.36 Aligned_cols=135 Identities=8% Similarity=0.052 Sum_probs=85.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCH--HH
Q 037911 462 KCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLING-YCMEKDV--NK 538 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 538 (609)
..|++++|...+++..+... .+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45677777777777665432 355667777777777777777777777776543 3355666666666 6677776 77
Q ss_pred HHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 539 AEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 539 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
|...++.+.+.. +.+...+..+..+|...|++++|.+.++++++. .|+......++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRINRTQLVESIN 159 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHHHHHH
Confidence 777777777653 224466677777777777777777777777754 444444444544443
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=1.3e-06 Score=73.76 Aligned_cols=129 Identities=9% Similarity=-0.037 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGY 530 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 530 (609)
..+..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 4566677778888999999998888877542 357778888888888999999999998888753 44677888888889
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhcHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 037911 531 CMEKDVNKAEALLGFFAKKFQIYDTESYNAV--FNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 582 (609)
...|++++|...++++.+.. +.+...+..+ +..+...|++++|++.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999998888763 2234445333 334777889999999888765
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.60 E-value=3.9e-06 Score=78.74 Aligned_cols=169 Identities=8% Similarity=-0.067 Sum_probs=100.0
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcH----HhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSV----DVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF 201 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 201 (609)
...+...+..+...|++++|.+.+.+.++..+.. ... ..+..+.. .|...|++++|+..++++.+...
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH-PEFQQFLQWQYYVAA-------YVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHH-------HHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC-hhHHHHHHHHHHHHH-------HHhcCCCHHHHHHHHHHHHHHHh
Confidence 3445566777888889999988888887652211 111 11222333 56677788888888887765321
Q ss_pred ---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 037911 202 ---QPS--IVSCNFLLNGLLKLNCIDQCWQVYEEMGRI-GICPN-----THTFNILTHVFCKNGDVDKVNGFLEKIEEEG 270 (609)
Q Consensus 202 ---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 270 (609)
.+. ..+|+.+...|...|++++|...|++..+. ...++ ..++..+...|.+.|++++|...+++..+..
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111 346777777777777777777777776521 00111 1456666667777777777777776655431
Q ss_pred ----CCC-CHHhHHHHHHHHHhcCCHhHH-HHHHHHHh
Q 037911 271 ----FDP-DLVTYNTLISSYCKKGRLNDA-FYLYRIMY 302 (609)
Q Consensus 271 ----~~~-~~~~~~~li~~~~~~g~~~~a-~~~~~~~~ 302 (609)
... -..+|..+..+|.+.|+.++| ...+++..
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 011 134556666666666666666 55555443
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.59 E-value=7.5e-07 Score=73.70 Aligned_cols=101 Identities=12% Similarity=-0.051 Sum_probs=79.3
Q ss_pred CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 037911 160 PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN 239 (609)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 239 (609)
|.+...+..+.. .+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++..+.. +.+
T Consensus 33 p~~~~~~~~lg~-------~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~ 103 (151)
T 3gyz_A 33 DDMMDDIYSYAY-------DFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KND 103 (151)
T ss_dssp HHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSC
T ss_pred HHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCC
Confidence 445556666666 7888888888888888888765 5577788888888888888888888888887753 345
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 240 THTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
...|..+..+|.+.|++++|...|++..+.
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 677788888888888888888888888776
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=2.6e-06 Score=67.76 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=64.0
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...|..++..+...|++++|.+.++++++. .|.+...+..+.. .+...|++++|+..|+++.+.. +.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~-------~~~~~~~~~~A~~~~~~~~~~~-~~~~ 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGN-------AYYKQGDYDEAIEYYQKALELD-PNNA 77 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHH-------HHHHhCCHHHHHHHHHHHHHhC-CccH
Confidence 456666777777777777777777777665 2344555555655 6667777777777777766643 3455
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
..+..+...+...|++++|...++++.+.
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56666666666666666666666666553
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=1.2e-06 Score=70.81 Aligned_cols=119 Identities=10% Similarity=0.079 Sum_probs=74.4
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
+.+...|..++..+...|++++|...++++++. .|.+..++..+.. .|...|++++|++.++++.+.. +
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~-------~~~~~~~~~~A~~~~~~a~~~~-~ 81 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAA-------CYTKLLEFQLALKDCEECIQLE-P 81 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHH-------HHTTTTCHHHHHHHHHHHHHHC-T
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHH-------HHHHhccHHHHHHHHHHHHHhC-C
Confidence 335666777777777777777777777777654 3445566666665 6677777777777777776643 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN 253 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 253 (609)
.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++.+.
T Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 455666666666777777777777776665532 12234444444444443
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=2e-06 Score=69.14 Aligned_cols=119 Identities=14% Similarity=0.065 Sum_probs=66.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...+..++..+...|++++|...++++++. .|.+...+..+.. .+...|++++|++.+++..+.. +.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~~~~~~-~~~ 79 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAA-------AYSKLGNYAGAVQDCERAICID-PAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHH-------HHHHhhchHHHHHHHHHHHhcC-ccC
Confidence 3445556666666666666666666666654 2334555555555 5666666666666666666543 334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD 255 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 255 (609)
...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555556666666666666666555432 2234444445555544443
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=3.2e-06 Score=76.82 Aligned_cols=189 Identities=10% Similarity=-0.073 Sum_probs=129.9
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHhhCCCCCC------------
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFL-------LNGLLKLNCIDQCWQVYEEMGRIGICPN------------ 239 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~~~~~------------ 239 (609)
.+ ..++...|.+.|.++.+.. +-....|+.+ ..++.+.++..++...+..-.+ +.|+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLY 91 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTT
T ss_pred cc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcc
Confidence 44 5899999999999999875 5667788887 5666666666666666655444 2222
Q ss_pred ----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCC
Q 037911 240 ----------THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPD 309 (609)
Q Consensus 240 ----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 309 (609)
..........+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 1223345666778888888888888877653 444355566667888888888888887554431 111
Q ss_pred --HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037911 310 --LVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD--IVSYNTLIFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 310 --~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566777788888888888888888875432243 234555666777888888888888888765
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=1.4e-06 Score=76.60 Aligned_cols=156 Identities=13% Similarity=0.015 Sum_probs=81.4
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHHcCC
Q 037911 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI----GIC-PNTHTFNILTHVFCKNGD 255 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g~ 255 (609)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456777888775544433 21234556777777777777777777777776541 111 123455556666666677
Q ss_pred hHHHHHHHHHHHHc----CCCC--CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC----Ccc-CCHhhHHHHHHHHHhcC
Q 037911 256 VDKVNGFLEKIEEE----GFDP--DLVTYNTLISSYCKKGRLNDAFYLYRIMYRR----NVL-PDLVTYTTLMNGLCKEG 324 (609)
Q Consensus 256 ~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~ll~~~~~~~ 324 (609)
+++|...+++..+. +..+ ....+..+...+...|++++|...+++..+. +.. .-..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77766666665442 1011 1234555556666666666666666555431 100 01122344444555555
Q ss_pred CHHHHHHHHHHHH
Q 037911 325 KVREAHQLFHRMV 337 (609)
Q Consensus 325 ~~~~a~~~~~~m~ 337 (609)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=5.5e-07 Score=74.56 Aligned_cols=97 Identities=12% Similarity=-0.058 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 486 STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
..+..+...+...|++++|+..|++++... +.+...+..+..+|...|++++|...|+++.... +.++..+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344555556666666666666666666532 3355566666666666666666666666666552 22445566666666
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 037911 566 AEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~ 584 (609)
...|++++|++.|++.++.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6677777777766666643
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=1.1e-06 Score=75.37 Aligned_cols=120 Identities=9% Similarity=0.069 Sum_probs=79.4
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNG-LL 216 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 216 (609)
..|++++|...++++++. .|.+...+..+.. .|...|++++|+..|+++.+.. +.+...+..+..+ +.
T Consensus 22 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~-------~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA---NPQNSEQWALLGE-------YYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYY 90 (177)
T ss_dssp -----CCCCHHHHHHHHH---CCSCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHh---CCCcHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456777777777777765 3455666666666 7777888888888887777654 3456666666666 66
Q ss_pred hcCCh--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 217 KLNCI--DQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 217 ~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
..|++ ++|...+++..+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 67776 77777777776642 334566666777777777777777777777665
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=2.7e-06 Score=68.71 Aligned_cols=118 Identities=11% Similarity=-0.040 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037911 449 SLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLIN 528 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 528 (609)
+...+..+...+.+.|++++|...|++..+... .+...+..+..++...|++++|+..++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 344555556666666666666666666655421 244555555566666666666666666665532 234555555666
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037911 529 GYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDG 569 (609)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 569 (609)
++.+.|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 6666666666666666555442 112234444444444433
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.52 E-value=3.8e-06 Score=66.80 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGY 530 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 530 (609)
..+..+...+...|++++|.++++++.+... .+..++..+...+...|++++|..+++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 3444444555555555555555555544321 233444444455555555555555555554422 22344444445555
Q ss_pred HccCCHHHHHHHHHHHHHc
Q 037911 531 CMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~ 549 (609)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555544433
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.51 E-value=1.5e-06 Score=76.39 Aligned_cols=97 Identities=11% Similarity=-0.075 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCC-CCH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRI----GICP--NTHTFNILTHVFCKNGDVDKVNGFLEKIEEE----GFD-PDL 275 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~ 275 (609)
++..+...+...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. .-.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4444555555555555555555554331 1011 1234555666666667777776666665432 100 012
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037911 276 VTYNTLISSYCKKGRLNDAFYLYRIMYR 303 (609)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 303 (609)
.++..+...+...|++++|.+.+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2356666777778888888777776654
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=2.4e-06 Score=81.74 Aligned_cols=130 Identities=14% Similarity=0.010 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCC
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRNIKPS--------------LSTYRALICCFCGIGRSGEAVSLMDEMLESGM 516 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 516 (609)
..+..+...+.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3455555555566666666666666555432111 3566667777777777777777777777643
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037911 517 LPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKL-MELQKRFL 582 (609)
Q Consensus 517 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 582 (609)
+.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++| .+.|++|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356667777777777777777777777777652 22445666777777777777776 44555554
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=3.2e-06 Score=67.90 Aligned_cols=118 Identities=8% Similarity=-0.070 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 450 LEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLING 529 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 529 (609)
...+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 34455555556666666666666666554321 244555555566666666666666666665532 2335555556666
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC
Q 037911 530 YCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGD 570 (609)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 570 (609)
+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666655542 2233445555555555444
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.47 E-value=2.1e-06 Score=79.89 Aligned_cols=99 Identities=9% Similarity=-0.099 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 283 (609)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666667777777777777777776542 2356666677777777777777777777776653 234566667777
Q ss_pred HHHhcCCHhHHHHHHHHHhhC
Q 037911 284 SYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 284 ~~~~~g~~~~a~~~~~~~~~~ 304 (609)
+|...|++++|+..|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776653
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=3.7e-06 Score=80.50 Aligned_cols=153 Identities=8% Similarity=-0.015 Sum_probs=102.3
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC------------cHHhHHHHhh
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH------------SVDVFQDLIS 171 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~ 171 (609)
++++.|+..|+.+... .+.+...|..+...+.+.|++++|+..|+++++..+..+. ...++..+..
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3455565555544431 1125678899999999999999999999999987332210 0355556665
Q ss_pred ccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 037911 172 CTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFC 251 (609)
Q Consensus 172 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 251 (609)
+|.+.|++++|+..|+++++.. +.+..+|..+..++...|++++|...|++..+.. +.+...+..+..++.
T Consensus 205 -------~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 205 -------CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 275 (336)
T ss_dssp -------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred -------HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 6777777777777777777754 4566677777777777777777777777776642 334556666666677
Q ss_pred HcCChHHH-HHHHHHHH
Q 037911 252 KNGDVDKV-NGFLEKIE 267 (609)
Q Consensus 252 ~~g~~~~a-~~~~~~~~ 267 (609)
+.|+.+++ ..+++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77776666 33455444
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.45 E-value=4.7e-06 Score=66.66 Aligned_cols=97 Identities=9% Similarity=0.080 Sum_probs=66.2
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..|..++..+.+.|++++|+..|+++++. .|.+...+..+.. .|.+.|++++|+..|+++++.. +.+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~al~~~-p~~~ 72 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAA-------ALAKLMSFPEAIADCNKAIEKD-PNFV 72 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhC-CCcH
Confidence 445666677777777777777777777765 3455666666666 6777777777777777777654 4456
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
..|..+..++...|++++|...|++..+
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 6666677777777777777777776655
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=1.1e-06 Score=72.70 Aligned_cols=101 Identities=9% Similarity=-0.004 Sum_probs=68.6
Q ss_pred CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 037911 160 PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN 239 (609)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 239 (609)
|.+...+..+.. .+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++..... +.+
T Consensus 18 p~~~~~~~~~g~-------~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~ 88 (148)
T 2vgx_A 18 SDTLEQLYSLAF-------NQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXE 88 (148)
T ss_dssp HHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HhhHHHHHHHHH-------HHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 334445555555 6777777777777777777654 4566677777777777777777777777776642 334
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 240 THTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
...+..+..++...|++++|...|++..+.
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566666777777777777777777776654
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.43 E-value=2.9e-06 Score=68.07 Aligned_cols=105 Identities=15% Similarity=0.024 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCC----hhcHHH
Q 037911 487 TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ--IYD----TESYNA 560 (609)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~ 560 (609)
++..+...+.+.|++++|+..|+++++.. +-+...|..+..+|.+.|++++|++.+++.++... ..+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666666677777777776666542 33455666666777777777777777766664421 011 124556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037911 561 VFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCK 594 (609)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 594 (609)
+..++...|++++|++.|++.++. .||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 667777777888888877777754 45554433
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=4.9e-06 Score=66.66 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=80.1
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC--CC
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF--QP 203 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~ 203 (609)
..++.-++..+.+.|++++|+..|+++++. .|.+..++..+.. +|.+.|++++|++.|++.++.+. .+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~-------~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAA-------VYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHH-------HHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 456777899999999999999999999987 5667888888887 89999999999999999886431 11
Q ss_pred C----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 037911 204 S----IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTF 243 (609)
Q Consensus 204 ~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 243 (609)
+ ..+|..+..++...|++++|++.|++.... .||....
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 1 235666667777777888888877776652 4555443
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=5.3e-06 Score=66.36 Aligned_cols=96 Identities=11% Similarity=-0.109 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 037911 487 TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFA 566 (609)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 566 (609)
.|..+...+.+.|++++|+..|+++++.. +.+...+..+..++.+.|++++|...+++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44455555666666666666666666532 3345566666666666666666666666666552 223455666666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 037911 567 EDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~ 584 (609)
..|++++|++.|++.++.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666666644
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=1.3e-05 Score=62.79 Aligned_cols=98 Identities=18% Similarity=0.128 Sum_probs=69.9
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..+..++..+...|++++|...+++++.. .|.+...+..+.. .|...|++++|+..+++..+.. +.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~~~~~~-~~~~ 72 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSA-------AYAKKGDYQKAYEDGCKTVDLK-PDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHH-------HHHhhccHHHHHHHHHHHHHhC-cccH
Confidence 456667777777788888888888877765 3445666666666 6777788888888887777654 3456
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
..+..+..++...|++++|.+.+++..+.
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 66777777777777777777777777664
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.38 E-value=0.00015 Score=67.89 Aligned_cols=131 Identities=11% Similarity=0.032 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-hHHHHHH
Q 037911 186 IRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN--CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD-VDKVNGF 262 (609)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~ 262 (609)
+++++.+++.+.... +.+..+|+.-..++...+ .+++++++++++.+.. +-|...|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 578888888888754 678888888887777777 4789999999988754 4577778777777777787 5888888
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhc--------------CCHhHHHHHHHHHhhCCccCCHhhHHHHHHHH
Q 037911 263 LEKIEEEGFDPDLVTYNTLISSYCKK--------------GRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGL 320 (609)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 320 (609)
++++.+..+ -|..+|+.....+.+. +.++++++.+++.....+. |...|+-+--.+
T Consensus 168 ~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll 237 (331)
T 3dss_A 168 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 888888753 3677777766655544 3456666666666665444 555555443333
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.38 E-value=4.7e-06 Score=68.38 Aligned_cols=90 Identities=12% Similarity=-0.127 Sum_probs=42.6
Q ss_pred HHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC
Q 037911 491 LICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGD 570 (609)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 570 (609)
+...+.+.|++++|+..|++++... +.+...|..+..++.+.|++++|...|+...... +.++..+..+..+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3344444555555555555544422 2234444445555555555555555555544432 2233444445555555555
Q ss_pred HHHHHHHHHHHH
Q 037911 571 LSKLMELQKRFL 582 (609)
Q Consensus 571 ~~~A~~~~~~m~ 582 (609)
+++|++.|++.+
T Consensus 102 ~~~A~~~~~~al 113 (142)
T 2xcb_A 102 LDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.37 E-value=4.4e-06 Score=68.55 Aligned_cols=98 Identities=13% Similarity=0.017 Sum_probs=69.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...+..++..+.+.|++++|...|+.++.. .|.+...+..+.. .|.+.|++++|+..|+++++.+ +.+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~-------~~~~~g~~~~A~~~~~~al~~~-p~~ 85 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGA-------CRQSLGLYEQALQSYSYGALMD-INE 85 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 4455666677777777777777777777765 4456666666666 6777777777777777777754 445
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
...+..+..++...|++++|...|++..+
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666777777777777777777777665
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=1.2e-05 Score=63.08 Aligned_cols=97 Identities=9% Similarity=-0.062 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 486 STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445555566666666666666666666532 3355566666666667777777777776666552 22445666666777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 037911 566 AEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~ 584 (609)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 7777777777777777643
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.35 E-value=6.3e-06 Score=66.15 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=86.9
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC--CC
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF--QP 203 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~ 203 (609)
+..|..++..+...|++++|...++++++. .|.+...+..+.. .|...|++++|+..++++.+... .+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~-------~~~~~~~~~~A~~~~~~~~~~~~~~~~ 73 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAA-------VYFEKGDYNKCRELCEKAIEVGRENRE 73 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHH-------HHHHhccHHHHHHHHHHHHhhccccch
Confidence 467888899999999999999999999986 3556777777777 89999999999999999887531 11
Q ss_pred C----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 037911 204 S----IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHV 249 (609)
Q Consensus 204 ~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 249 (609)
+ ..++..+..++...|++++|.+.|++..+. .|+......+...
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 2 667777888888888888888888888774 3565555444433
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=7.1e-06 Score=63.70 Aligned_cols=99 Identities=8% Similarity=-0.000 Sum_probs=69.2
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC-
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP- 203 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~- 203 (609)
+...|..++..+...|++++|...++++++. .|.+...+..+.. .|...|++++|+..|+++.+.. +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~a~~~~-~~~ 73 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGK-------ALYNLERYEEAVDCYNYVINVI-EDE 73 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHTS-CCT
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhC-ccc
Confidence 4556667777777778888888877777765 3445566666666 6777777777777777777654 33
Q ss_pred -CHHHHHHHHHHHHhc-CChHHHHHHHHHHhhC
Q 037911 204 -SIVSCNFLLNGLLKL-NCIDQCWQVYEEMGRI 234 (609)
Q Consensus 204 -~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~ 234 (609)
+...+..+..++... |++++|.+.+++....
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 466677777777777 7777777777777654
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.32 E-value=1.4e-05 Score=64.84 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=72.9
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP 203 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (609)
.++..|..++..+...|++++|...|+.++.. .|.+..++..+.. .|...|++++|+..++++.+.. +.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~al~~~-p~ 75 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRAL-------CYLKMQQPEQALADCRRALELD-GQ 75 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhC-ch
Confidence 46777777888888888888888888887766 3455666666666 7778888888888888777754 44
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
+...|..+..++...|++++|...|++..+
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 566777777777777777777777777654
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.32 E-value=8.2e-06 Score=71.36 Aligned_cols=126 Identities=10% Similarity=0.028 Sum_probs=80.6
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC--c-----------HHhHHHHhhccccchhHHHHhCCHHHHHHH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH--S-----------VDVFQDLISCTEDCNWAYVKVGLIRESFKT 192 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~-----------~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~ 192 (609)
...+..++..+...|++++|...|+++++..+..+. . ..++..+.. .|...|++++|+..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-------~~~~~~~~~~A~~~ 110 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT-------CYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH-------HHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-------HHHHhcCHHHHHHH
Confidence 445667788888899999999999998876332221 0 144555555 67777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 193 FRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVN 260 (609)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 260 (609)
++++++.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++.
T Consensus 111 ~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 111 ASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77777653 4456667777777777777777777777766532 234455555555555555544444
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.32 E-value=6.3e-06 Score=65.33 Aligned_cols=95 Identities=6% Similarity=-0.119 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVS 207 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 207 (609)
.+..++..+.+.|++++|+..++.+++. .|.+...+..+.. .+...|++++|+..|+++++.. +.+...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~-------~~~~~g~~~~A~~~~~~al~l~-P~~~~~ 87 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGL-------TQAENEKDGLAIIALNHARMLD-PKDIAV 87 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 3445555666666666666666666654 3445555555555 5666666666666666666543 334555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 208 CNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
+..+..++...|++++|...|++..+
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666666554
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.30 E-value=1.1e-05 Score=70.50 Aligned_cols=133 Identities=14% Similarity=-0.011 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRNIKPS---------------LSTYRALICCFCGIGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (609)
..+..+...+.+.|++++|+..|++..+...... ...|..+..++...|++++|+..++++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455566667777777777777777765421111 2667777888888888888888888888753
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHH-HHHHHHHHcC
Q 037911 516 MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLM-ELQKRFLRLG 585 (609)
Q Consensus 516 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~g 585 (609)
+.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...|+.+++. ..++.|...|
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4467778888888888899999999888888763 234567777777777777777766 5566665443
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.30 E-value=0.00038 Score=65.12 Aligned_cols=133 Identities=9% Similarity=0.016 Sum_probs=59.5
Q ss_pred hcCCHH-HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 037911 322 KEGKVR-EAHQLFHRMVHRGLSP-DIVSYNTLIFAYCKEGK----------MQESKSLLYEMMGNGIYPDTFTCQIIVQG 389 (609)
Q Consensus 322 ~~~~~~-~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (609)
+.|.++ +|+.+++.+... .| +...|+.--..+...+. +++++.+++.++... +-+..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344433 566666666654 22 23333332222222221 345555555555432 2244445444444
Q ss_pred HHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037911 390 YGKEG--RLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNR-PFAATSLLERIGQDGYVPSLEIYNELMES 459 (609)
Q Consensus 390 ~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (609)
+.+.+ .+++++.+++++.+... -+...|+.-..++...|. ++++...+.++.... +.+...|+.....
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~l 188 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 188 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 44444 25555555555555442 244444444444444444 244444444443332 2344444443333
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=1.5e-05 Score=67.14 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=78.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...|..+...+...|++++|+..|+++++. .|.+..++..+.. .|.+.|++++|+..|+++++.. +.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~al~~~-p~~ 78 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAA-------AYSASGQHEKAAEDAELATVVD-PKY 78 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 5667777888888888888888888888876 3556777777777 7888888888888888888765 456
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
...|..+..++...|++++|...|++..+.
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777888888888888888888888887664
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.2e-05 Score=63.61 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHH
Q 037911 484 SLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD----SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYN 559 (609)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 559 (609)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3455555666666666666666666666642 344 4556666666666777777777776666552 22345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037911 560 AVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMI 597 (609)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 597 (609)
.+..+|...|++++|.+.|++.++. .|+.......+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 139 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 6666677777777777777777644 44443333333
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.29 E-value=1.1e-05 Score=68.09 Aligned_cols=99 Identities=8% Similarity=-0.097 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037911 449 SLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLIN 528 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 528 (609)
+...+..+...+.+.|++++|+..|++.++... .+...|..+..+|...|++++|+..++++++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456677777778888888888888888776542 356677777778888888888888888887653 335667777888
Q ss_pred HHHccCCHHHHHHHHHHHHHc
Q 037911 529 GYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~ 549 (609)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888877765
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.28 E-value=2.4e-05 Score=62.66 Aligned_cols=99 Identities=11% Similarity=-0.022 Sum_probs=63.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC---
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS--- 204 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 204 (609)
.+..++..+...|++++|...|+.+++..+..+.....+..+.. .|...|++++|+..|+++.+.. +.+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~-------~~~~~~~~~~A~~~~~~~~~~~-p~~~~~ 75 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGE-------SYYATRNFQLAEAQFRDLVSRY-PTHDKA 75 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTSTTH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHH-------HHHHhccHHHHHHHHHHHHHHC-CCCccc
Confidence 34455666777777777777777777653333333345555555 6777777777777777776643 222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
..++..+..++...|++++|...|+++.+.
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455666666777777777777777776653
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.24 E-value=2.3e-05 Score=63.54 Aligned_cols=96 Identities=7% Similarity=-0.187 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 037911 485 LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNM 564 (609)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 564 (609)
...+..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|...++...+.. +.+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3344444444444444444444444444322 2234444444445555555555555555444432 1233444445555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 037911 565 FAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~ 582 (609)
|...|++++|++.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555555544
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.22 E-value=1.4e-05 Score=61.89 Aligned_cols=89 Identities=12% Similarity=0.064 Sum_probs=50.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHc-CC
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICP--NTHTFNILTHVFCKN-GD 255 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~-g~ 255 (609)
.+...|++++|+..|+++.+.. +.+...|..+...+...|++++|.+.|++..+.. +. +...+..+..++... |+
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGK 92 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSC
T ss_pred HHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCC
Confidence 5566666666666666666543 3345555555566666666666666666655532 22 345555555555555 55
Q ss_pred hHHHHHHHHHHHHc
Q 037911 256 VDKVNGFLEKIEEE 269 (609)
Q Consensus 256 ~~~a~~~~~~~~~~ 269 (609)
+++|.+.+++....
T Consensus 93 ~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 93 EVEAEIAEARAKLE 106 (112)
T ss_dssp SHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhc
Confidence 55555555555544
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=1.2e-05 Score=64.47 Aligned_cols=90 Identities=11% Similarity=0.161 Sum_probs=55.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCC----HHHHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGI--CPN----THTFNILTHVFCK 252 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~l~~~~~~ 252 (609)
.+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+++...... .++ ..++..+...+..
T Consensus 13 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 91 (131)
T 1elr_A 13 DAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 91 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence 5667777777777777776643 34566666666667777777777777766654320 111 4455556666666
Q ss_pred cCChHHHHHHHHHHHHc
Q 037911 253 NGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 253 ~g~~~~a~~~~~~~~~~ 269 (609)
.|++++|.+.+++..+.
T Consensus 92 ~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 92 EEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 66666666666666554
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.20 E-value=1.4e-05 Score=63.35 Aligned_cols=93 Identities=10% Similarity=-0.052 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 037911 489 RALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAED 568 (609)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 568 (609)
..+...+.+.|++++|+..++++++.. +.+...+..+..++...|++++|+..+++..+.. +-+...+..+..+|...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334455566677777777777666532 3355666666667777777777777777666552 22345666666777777
Q ss_pred CCHHHHHHHHHHHHH
Q 037911 569 GDLSKLMELQKRFLR 583 (609)
Q Consensus 569 g~~~~A~~~~~~m~~ 583 (609)
|++++|++.+++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777777663
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=6.4e-05 Score=74.85 Aligned_cols=199 Identities=10% Similarity=-0.019 Sum_probs=109.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhCCCCC--------------cHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHH
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVKDCPH--------------SVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTL 197 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 197 (609)
-++.+...|++++|.+.|..+++..+.... ....+..++. .|...|++++|.+.+.++.
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~-------~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQ-------LYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHH-------HHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHH-------HHHHCCCHHHHHHHHHHHH
Confidence 356677788888888888888875222111 1123445555 7888888888888887776
Q ss_pred hCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhh----CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 198 DVGF-QPSI----VSCNFLLNGLLKLNCIDQCWQVYEEMGR----IGICPN-THTFNILTHVFCKNGDVDKVNGFLEKIE 267 (609)
Q Consensus 198 ~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 267 (609)
+.-- .++. .+.+.+...+...|+.++|.+++++... .+..+. ..++..+...+...|++++|..++++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 5210 1111 1222223333445677777777666532 111222 3455666666777777777777766654
Q ss_pred Hc--CC--CC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CccCC--HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 268 EE--GF--DP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRR----NVLPD--LVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 268 ~~--~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
.. +. .+ ...++..++..|...|++++|..++++.... +..+. ...+..+...+...|++++|...|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 163 REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 42 10 11 1335666666666666666666666665431 11111 123444445555566666666655554
Q ss_pred H
Q 037911 337 V 337 (609)
Q Consensus 337 ~ 337 (609)
.
T Consensus 243 ~ 243 (434)
T 4b4t_Q 243 F 243 (434)
T ss_dssp H
T ss_pred H
Confidence 4
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=7.5e-05 Score=61.30 Aligned_cols=99 Identities=17% Similarity=0.044 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhH
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN----THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTY 278 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 278 (609)
.+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45566667777777777777777777777663 344 4566666667777777777777777766653 2245566
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 279 NTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
..+..++...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666777777777777777766654
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=7.4e-05 Score=74.38 Aligned_cols=196 Identities=7% Similarity=-0.063 Sum_probs=141.2
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCH---------------HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcH--
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKPTS---------------SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSV-- 163 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-- 163 (609)
...|++++|++.|..+.+......+. .++..++.+|...|++++|.+.+..+.+..+..+...
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 34579999999999998754333221 2478899999999999999999999887644332211
Q ss_pred -HhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--C
Q 037911 164 -DVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD----VGFQP-SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI--G 235 (609)
Q Consensus 164 -~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~ 235 (609)
.+...+.. .+...|++++|+.+++...+ .+..+ -..++..+...+...|++++|..++++.... +
T Consensus 95 ~~~~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 95 KVLKTLIEK-------FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp HHHHHHHHH-------HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 12222222 45567899999999988764 22222 2457788999999999999999999987542 1
Q ss_pred C---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC--HHhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037911 236 I---CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE----GFDPD--LVTYNTLISSYCKKGRLNDAFYLYRIMYR 303 (609)
Q Consensus 236 ~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 303 (609)
. +....++..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 112467888999999999999999999987643 11111 24566677788889999999998877764
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=3e-05 Score=64.80 Aligned_cols=100 Identities=15% Similarity=0.094 Sum_probs=63.4
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCc---HHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC--
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHS---VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG-- 200 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-- 200 (609)
..++..+...+...|++++|...++++++..+..+.. ...+..+.. .|...|++++|++.+++..+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGN-------AYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999999888763221111 124444555 7888888888888888776521
Q ss_pred --CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 201 --FQP-SIVSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 201 --~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
.++ ....+..+...+...|++++|.+.+++..
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 000 13345555556666666666666665543
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=6.4e-05 Score=60.09 Aligned_cols=86 Identities=13% Similarity=0.046 Sum_probs=37.5
Q ss_pred HhcCCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----hhcHHHHHHHHHh
Q 037911 495 FCGIGRSGEAVSLMDEMLESGMLPDS---QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD----TESYNAVFNMFAE 567 (609)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 567 (609)
+...|++++|...|+++.+.. +.+. ..+..+..++.+.|++++|...++.+.+.. |+ ...+..+..++..
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHH
Confidence 334444444444444444321 1111 233444444444555555555554444432 11 2334444444555
Q ss_pred cCCHHHHHHHHHHHHH
Q 037911 568 DGDLSKLMELQKRFLR 583 (609)
Q Consensus 568 ~g~~~~A~~~~~~m~~ 583 (609)
.|++++|.+.|+++++
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555543
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=8e-06 Score=64.31 Aligned_cols=86 Identities=19% Similarity=0.117 Sum_probs=45.7
Q ss_pred CCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHH
Q 037911 498 IGRSGEAVSLMDEMLESG--MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
.|++++|+..|+++++.+ -+.+...+..+..+|...|++++|...+++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355566666666665432 01223445556666666666666666666666552 223455555666666666666666
Q ss_pred HHHHHHHHc
Q 037911 576 ELQKRFLRL 584 (609)
Q Consensus 576 ~~~~~m~~~ 584 (609)
+.+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666543
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.07 E-value=3.7e-06 Score=84.59 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=42.3
Q ss_pred HHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037911 136 LAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGL 215 (609)
Q Consensus 136 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 215 (609)
+.+.|++++|.+.++++++. .|.+...+..+.. +|.+.|++++|++.++++.+.. +.+..+|..+..++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~-------~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSL-------AYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 84 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34445555555555555543 2333444444444 4555555555555555555442 23344444455555
Q ss_pred HhcCChHHHHHHHHHHhh
Q 037911 216 LKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~ 233 (609)
...|++++|.+.|++..+
T Consensus 85 ~~~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 85 MALGKFRAALRDYETVVK 102 (477)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.06 E-value=5.8e-05 Score=63.36 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=78.0
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCC---------------CCCcHHhHHHHhhccccchhHHHHhCCHHHHH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKD---------------CPHSVDVFQDLISCTEDCNWAYVKVGLIRESF 190 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~ 190 (609)
...+...+..+.+.|++++|+..|.+++...+. .|....++..+.. +|.+.|++++|+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-------~~~~~~~~~~A~ 83 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQ-------CYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHH-------HHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH-------HHHhcCcHHHHH
Confidence 456777888899999999999999998875110 1233456666666 788888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 037911 191 KTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT 240 (609)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 240 (609)
..++++++.+ +.+..+|..+..++...|++++|...|++..+. .|+.
T Consensus 84 ~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 84 ETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 8888888765 556777888888888888888888888887763 3543
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.06 E-value=4.1e-05 Score=76.64 Aligned_cols=87 Identities=8% Similarity=0.011 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 486 STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
..|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555555432 2234445555555555555555555555555431 11224444455555
Q ss_pred HhcCCHHHH
Q 037911 566 AEDGDLSKL 574 (609)
Q Consensus 566 ~~~g~~~~A 574 (609)
.+.|++++|
T Consensus 396 ~~~~~~~~a 404 (457)
T 1kt0_A 396 KKAKEHNER 404 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.06 E-value=4.4e-05 Score=64.10 Aligned_cols=68 Identities=16% Similarity=0.034 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 037911 521 QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNL 591 (609)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 591 (609)
..|..+..+|.+.|++++|...++..++.. +.+...|..+..+|...|++++|++.|++.++. .|+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 455566666666666666666666666542 223455666666666666666666666666644 45443
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=4e-05 Score=63.99 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGIC-PN----THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFD-PD----LV 276 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~ 276 (609)
++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.... .+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555666666666666555432100 01 124444555555555555555555554432000 00 22
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHh
Q 037911 277 TYNTLISSYCKKGRLNDAFYLYRIMY 302 (609)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~~~ 302 (609)
.+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444445555555555555554443
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.04 E-value=6.2e-05 Score=75.30 Aligned_cols=145 Identities=10% Similarity=0.015 Sum_probs=91.6
Q ss_pred ChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC------------cHHhHHHHhhc
Q 037911 105 DSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH------------SVDVFQDLISC 172 (609)
Q Consensus 105 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~ 172 (609)
+++.|+..|+.+... .+.....|..+...+.+.|++++|+..|+++++..+..+. ...++..+..
T Consensus 249 ~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~- 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM- 325 (457)
T ss_dssp EEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred hcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH-
Confidence 344455444443321 0124667888999999999999999999999987433211 0344555555
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK 252 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 252 (609)
+|.+.|++++|+..|+++++.. +.+..+|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+
T Consensus 326 ------~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 326 ------CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKK 397 (457)
T ss_dssp ------HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred ------HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 6777777777777777777654 4456667777777777777777777777766642 2234555666666666
Q ss_pred cCChHHHH
Q 037911 253 NGDVDKVN 260 (609)
Q Consensus 253 ~g~~~~a~ 260 (609)
.++.+++.
T Consensus 398 ~~~~~~a~ 405 (457)
T 1kt0_A 398 AKEHNERD 405 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.03 E-value=9.4e-05 Score=60.44 Aligned_cols=100 Identities=11% Similarity=-0.041 Sum_probs=73.6
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC----cH-----HhHHHHhhccccchhHHHHhCCHHHHHHHHHHH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH----SV-----DVFQDLISCTEDCNWAYVKVGLIRESFKTFRKT 196 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~-----~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~ 196 (609)
...+......+...|++++|+..|+++++..+..|. +. ..|..+.. ++.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~-------al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAE-------ALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHH-------HHHHCCCHHHHHHHHHHH
Confidence 445667788889999999999999999988554321 22 26666666 899999999999999999
Q ss_pred HhC-------CCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 197 LDV-------GFQPSIVSC----NFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 197 ~~~-------~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
++. . +.+...| .....++...|++++|+..|++..+
T Consensus 84 L~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 84 LHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 875 3 2344456 6666677777777777777776654
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=6.7e-05 Score=72.58 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=70.0
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCC-------------CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKD-------------CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKT 192 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~ 192 (609)
...|..+...+.+.|++++|+..|+++++..+. .|....++..+.. +|.+.|++++|++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-------~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGA-------CKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHH-------HHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHH-------HHHhccCHHHHHHH
Confidence 446788899999999999999999999873110 1122334444444 55555666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 193 FRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
++++++.. +.+..+|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.++
T Consensus 296 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 296 CLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 65555543 3345555555555555555555555555554431 1233344444444444444333
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=1.1e-05 Score=63.59 Aligned_cols=87 Identities=10% Similarity=-0.014 Sum_probs=50.9
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037911 139 NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL 218 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 218 (609)
.|++++|+..|+++++.....|....++..+.. .|...|++++|+..|+++++.. +.+...+..+..++...
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~-------~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGS-------TFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNL 74 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHc
Confidence 456666666666666431112344555555555 6667777777777777776654 34456666666666666
Q ss_pred CChHHHHHHHHHHhh
Q 037911 219 NCIDQCWQVYEEMGR 233 (609)
Q Consensus 219 ~~~~~a~~~~~~m~~ 233 (609)
|++++|...|++..+
T Consensus 75 g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 75 GRYEQGVELLLKIIA 89 (117)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777776666654
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.97 E-value=2.6e-05 Score=78.48 Aligned_cols=118 Identities=8% Similarity=0.006 Sum_probs=93.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+.+.|++++|++.|+++++.. +.+..+|..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 6788999999999999999864 5568899999999999999999999999998863 4467888889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHH--HHhcCCHhHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISS--YCKKGRLNDAFYLYR 299 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 299 (609)
|.+.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988763 2234455555555 788899999999888
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.95 E-value=2.6e-05 Score=74.57 Aligned_cols=100 Identities=12% Similarity=0.017 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH-H
Q 037911 487 TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNM-F 565 (609)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 565 (609)
.|..+..+|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.+.. +-+...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 67788888999999999999999998753 3467788899999999999999999999887652 2234555555555 3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCh
Q 037911 566 AEDGDLSKLMELQKRFLRLGFAPNN 590 (609)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~ 590 (609)
...+..+++.++|++|... .|+.
T Consensus 310 ~~~~~~~~a~~~~~~~l~~--~p~~ 332 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG--KDEG 332 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHhhCC--CCCC
Confidence 3456777888899988843 4543
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=0.00074 Score=69.15 Aligned_cols=171 Identities=9% Similarity=0.032 Sum_probs=127.0
Q ss_pred ChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCC----------HHHHHHHHHHHHhCCCCCCHHHHHH
Q 037911 141 KFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGL----------IRESFKTFRKTLDVGFQPSIVSCNF 210 (609)
Q Consensus 141 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (609)
..++|.+.+++++.. .|....+|..-.. .+...|+ ++++++.++++.+.. +.+..+|+.
T Consensus 44 ~~eeal~~~~~~l~~---nP~~~taW~~R~~-------~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~h 112 (567)
T 1dce_A 44 LDESVLELTSQILGA---NPDFATLWNCRRE-------VLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 112 (567)
T ss_dssp CSHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH---CchhHHHHHHHHH-------HHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 345678888888876 4555666655544 5556666 899999999999865 678889999
Q ss_pred HHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 037911 211 LLNGLLKLN--CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG-DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK 287 (609)
Q Consensus 211 ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 287 (609)
-..++.+.+ +++++++.++++.+.. +-|..+|+.-..++.+.| .++++.+.++++.+... -|..+|+.....+.+
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHh
Confidence 888888888 6799999999998864 457788888888888888 88999999998887753 367788877776665
Q ss_pred c--------------CCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC
Q 037911 288 K--------------GRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK 325 (609)
Q Consensus 288 ~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 325 (609)
. +.++++++.+++.....+. |...|..+-..+.+.++
T Consensus 191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 3 4467777777777765544 56666666655555555
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.91 E-value=9.7e-05 Score=71.44 Aligned_cols=90 Identities=16% Similarity=0.002 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 037911 485 LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNM 564 (609)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 564 (609)
...|..+..+|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|.+.|+++.+.. +.+...+..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4567777777788888888888888887643 3356677778888888888888888888877662 2244566666666
Q ss_pred HHhcCCHHHHHH
Q 037911 565 FAEDGDLSKLME 576 (609)
Q Consensus 565 ~~~~g~~~~A~~ 576 (609)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766666666543
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.91 E-value=7.1e-05 Score=74.73 Aligned_cols=126 Identities=8% Similarity=-0.094 Sum_probs=79.8
Q ss_pred HHHhCCChhHHHHHHHHHHHhhC-----CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh-----CC--CC
Q 037911 135 ILAWNNKFSFAMKMLCELVELVK-----DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD-----VG--FQ 202 (609)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~--~~ 202 (609)
.+..+|++++|+.+++++++... .+|....+++.+.. .|...|++++|..+++++++ .| .+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~-------~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASE-------VLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 45678999999999999987633 23445667888888 89999999999999988764 22 12
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR-----IGI-CP-NTHTFNILTHVFCKNGDVDKVNGFLEKIE 267 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 267 (609)
....+++.|...|...|++++|..++++..+ .|- .| ...+.+.+..++...+.+++|+.++..+.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234566677777777777777776666542 120 01 12223334444444455555555555544
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.89 E-value=0.0005 Score=55.65 Aligned_cols=112 Identities=14% Similarity=0.020 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 037911 464 DSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM----EKDVNKA 539 (609)
Q Consensus 464 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 539 (609)
+++++|+++|++..+.|. |+.. +...|...+.+++|++.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 456777777777777662 3333 5566666667777777777777654 56666777777776 6778888
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 037911 540 EALLGFFAKKFQIYDTESYNAVFNMFAE----DGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 586 (609)
.+.|++..+.+ ++..+..|...|.. .+++++|.++|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88887777653 45667777777777 7788888888888777653
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.86 E-value=5.5e-05 Score=75.56 Aligned_cols=127 Identities=9% Similarity=0.006 Sum_probs=100.1
Q ss_pred HhcCCChhHHHHHHHHhhhc----CCCCC--CHHhHHHHHHHHHhCCChhHHHHHHHHHHHh-----hCCCCCcHHhHHH
Q 037911 100 LRCQSDSVSALTFFNWVKND----LEIKP--TSSNYCLIVHILAWNNKFSFAMKMLCELVEL-----VKDCPHSVDVFQD 168 (609)
Q Consensus 100 ~~~~~~~~~A~~~f~~~~~~----~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~ 168 (609)
.+.+|++++|+.+++.+... .|..| ...+++.|+.+|...|+|++|..+++++++. ++..|.....+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35689999999999888752 23222 5778999999999999999999999998865 2344566677888
Q ss_pred HhhccccchhHHHHhCCHHHHHHHHHHHHh-----CC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 169 LISCTEDCNWAYVKVGLIRESFKTFRKTLD-----VG--FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 169 l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
|.. .|...|++++|+.+++++++ .| .+....+.+.+-.++...+.+++|..+|.++.+
T Consensus 399 La~-------~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGL-------TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHH-------HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888 99999999999999999875 34 222344566677788889999999999999865
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.85 E-value=5.8e-05 Score=72.18 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=72.3
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...+..+...+.+.|++++|...|++++... |.+. . +...|+.+++...+. .
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~-~--------------~~~~~~~~~~~~~l~----------~ 230 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDF-M--------------FQLYGKYQDMALAVK----------N 230 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHH-H--------------HTCCHHHHHHHHHHH----------T
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccch-h--------------hhhcccHHHHHHHHH----------H
Confidence 4567778888899999999999999998762 1111 1 112223333332221 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH-
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS- 284 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 284 (609)
..|+.+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+...
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 256666667777777777777777766542 3355666677777777777777777777766542 1123344444433
Q ss_pred HHhcCCHhHHHHHHHHHhhC
Q 037911 285 YCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~ 304 (609)
....+..+.+..+|+.|...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 23345566666777766654
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.75 E-value=0.00084 Score=54.29 Aligned_cols=111 Identities=10% Similarity=0.012 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChHHH
Q 037911 184 GLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK----NGDVDKV 259 (609)
Q Consensus 184 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 259 (609)
+++++|++.|++..+.| .+... |...|...+.+++|.+.|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677777777777766 23322 5555555566666777777766643 45566666666665 5666666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHhhCC
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLISSYCK----KGRLNDAFYLYRIMYRRN 305 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 305 (609)
.+.|++..+.| +...+..|...|.. .++.++|++.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666654 45555556666665 566666666666665554
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=3.4e-05 Score=59.79 Aligned_cols=94 Identities=10% Similarity=-0.024 Sum_probs=63.9
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...|..++..+...|++++|...++++++. .|.+...+..+.. .|...|++++|++.|+++++.. +.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~-------~~~~~g~~~~A~~~~~~al~~~-p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAM-------ALIKLGEYTQAIQMCQQGLRYT-STA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHTSC-SST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhC-CCc
Confidence 4566777788888888888888888888876 4456667777776 7888888888888888887754 222
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHH
Q 037911 205 ------IVSCNFLLNGLLKLNCIDQCWQVYE 229 (609)
Q Consensus 205 ------~~~~~~ll~~~~~~~~~~~a~~~~~ 229 (609)
...+..+..++...|+.+.|.+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 4445555555555555555444333
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=0.00049 Score=56.18 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 037911 349 NTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
.....++...|++++|+..|++.+
T Consensus 106 ~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 106 YSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444445555555555554443
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.70 E-value=0.0014 Score=67.00 Aligned_cols=171 Identities=8% Similarity=0.017 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC----------IDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 254 (609)
..++|++.++++++.. +.+..+|+.--.++...|+ ++++++.++++.+.. +-+..+|+.-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 4467789999988865 5567778877777766666 888888888887753 446677777777777888
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc--------
Q 037911 255 --DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKG-RLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE-------- 323 (609)
Q Consensus 255 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-------- 323 (609)
+++++++.++++.+.. +-+..+|+.-...+.+.| .++++++.++++.+.++. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6688888888888875 336777887777777777 788888888888877665 777777766666553
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037911 324 ------GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGK 360 (609)
Q Consensus 324 ------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 360 (609)
+.++++.+.+++..... +-|...|..+-..+.+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34567777777766542 2245566655555555554
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.65 E-value=0.00015 Score=59.19 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=74.8
Q ss_pred HhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCC----------HHHHHHHHHHHHhCCCCCCHH
Q 037911 137 AWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGL----------IRESFKTFRKTLDVGFQPSIV 206 (609)
Q Consensus 137 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~ 206 (609)
.+.+.|++|++.++..++. .|.+...+..+.. ++...|+ +++|+..|++.++.+ +.+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~-------~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~ 81 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS---NPLDADNLTRWGG-------VLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDE 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHH
Confidence 4556788999999999987 5677888887777 6777765 469999999999875 45777
Q ss_pred HHHHHHHHHHhcC-----------ChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 037911 207 SCNFLLNGLLKLN-----------CIDQCWQVYEEMGRIGICPNTHTFNILTH 248 (609)
Q Consensus 207 ~~~~ll~~~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 248 (609)
+|..+..+|...| ++++|++.|++..+ +.|+...|...+.
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 8888888888764 78888888888777 4576665544443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.0006 Score=50.15 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=51.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...+..+...+...|++++|...++++++. .|.+...+..+.. .|.+.|++++|+..|++..+.. +.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~a~~~~-p~~ 76 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGN-------AYYKQGDYDEAIEYYQKALELD-PNN 76 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 3456666677777777777777777777765 3345555666665 6777777777777777776643 334
Q ss_pred HHHHHHHHHHHHh
Q 037911 205 IVSCNFLLNGLLK 217 (609)
Q Consensus 205 ~~~~~~ll~~~~~ 217 (609)
...+..+..++..
T Consensus 77 ~~~~~~l~~~~~~ 89 (91)
T 1na3_A 77 AEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555544443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.58 E-value=4.7e-05 Score=58.91 Aligned_cols=63 Identities=10% Similarity=-0.061 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 486 STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
..+..+...+...|++++|+..|+++++.. +.+...+..+..++.+.|++++|.+.+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344455555555555666665555555432 234455555555566666666666666555543
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.55 E-value=0.00057 Score=53.19 Aligned_cols=79 Identities=10% Similarity=-0.080 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 468 DALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFA 547 (609)
Q Consensus 468 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (609)
+|+..|++..+... .+...+..+...+...|++++|+..++++++.. +.+...+..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555544321 234445555555555555555555555555432 2234445555555555555555555555544
Q ss_pred H
Q 037911 548 K 548 (609)
Q Consensus 548 ~ 548 (609)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.55 E-value=0.00062 Score=52.95 Aligned_cols=79 Identities=10% Similarity=-0.011 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHH
Q 037911 108 SALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIR 187 (609)
Q Consensus 108 ~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 187 (609)
.|+..|+.+... .+.+...+..++.++...|++++|+..++++++. .|.....+..+.. .|...|+++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~-------~~~~~g~~~ 70 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGK-------TLQGQGDRA 70 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHH-------HHHHcCCHH
Confidence 467777777753 2446788888888888999999999999888876 3456677777777 788889999
Q ss_pred HHHHHHHHHHh
Q 037911 188 ESFKTFRKTLD 198 (609)
Q Consensus 188 ~A~~~~~~~~~ 198 (609)
+|+..|++..+
T Consensus 71 ~A~~~~~~al~ 81 (115)
T 2kat_A 71 GARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888876
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.54 E-value=0.00029 Score=57.38 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=71.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCI----------DQCWQVYEEMGRIGICPNTHTFNILTH 248 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~l~~ 248 (609)
...+.+.+++|++.+++.++.. +.+...|+.+..++...+++ ++|+..|++..+.. +-+...|..+..
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ 88 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 88 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 3457778899999999999876 66888999888888888765 48888888887743 234567777888
Q ss_pred HHHHcC-----------ChHHHHHHHHHHHHcCCCCCHHhHHH
Q 037911 249 VFCKNG-----------DVDKVNGFLEKIEEEGFDPDLVTYNT 280 (609)
Q Consensus 249 ~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (609)
+|...| ++++|++.|++..+. .|+...|..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 877664 677777777777765 455444433
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.39 E-value=0.0018 Score=47.54 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=37.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVF 250 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 250 (609)
.+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++
T Consensus 18 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 5566666666666666665543 3345555555566666666666666666555432 22334444444433
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.29 E-value=0.0015 Score=49.23 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=56.9
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
+.++..+..++.++...|++++|+..|+++++. .|.....+..+.. +|...|++++|++.|++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~-------~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET---DPDYVGTYYHLGK-------LYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHH-------HHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHh
Confidence 347888999999999999999999999999987 4556677888887 89999999999999998876
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.21 E-value=0.0014 Score=49.47 Aligned_cols=62 Identities=16% Similarity=-0.025 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 485 LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFA 547 (609)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (609)
...+..+..+|...|++++|+..|+++++.. +.+...|..+..+|...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555555555432 2233445555555555555555555555444
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.96 E-value=0.0025 Score=62.42 Aligned_cols=88 Identities=7% Similarity=-0.143 Sum_probs=63.4
Q ss_pred hCCChhHHHHHHHHHHHhhC-----CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh-----CC--CCCCH
Q 037911 138 WNNKFSFAMKMLCELVELVK-----DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD-----VG--FQPSI 205 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~ 205 (609)
..|++++|..++++.++... .+|....+++.+.. .|...|++++|+.+++++++ .| .+...
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~-------~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMG-------VCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHH-------HHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 45789999999999987632 23445567788888 99999999999999998874 22 11223
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
.+++.|...|...|++++|..+|++..
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 356667777777777777777666654
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.85 E-value=0.0032 Score=61.76 Aligned_cols=90 Identities=9% Similarity=0.055 Sum_probs=73.0
Q ss_pred cCCChhHHHHHHHHhhhc----CCCCC--CHHhHHHHHHHHHhCCChhHHHHHHHHHHHh-----hCCCCCcHHhHHHHh
Q 037911 102 CQSDSVSALTFFNWVKND----LEIKP--TSSNYCLIVHILAWNNKFSFAMKMLCELVEL-----VKDCPHSVDVFQDLI 170 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~----~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~ 170 (609)
..|++++|+.+++.+... .|..| ...+++.++.+|..+|+|++|+.+++++++. ++..|.....++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999988752 22222 4678999999999999999999999999865 234456667788888
Q ss_pred hccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 171 SCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 171 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
. .|...|++++|+.+++++.+
T Consensus 390 ~-------~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 R-------LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp H-------HHHHTTCHHHHHHHHHHHHH
T ss_pred H-------HHHhccCHHHHHHHHHHHHH
Confidence 8 99999999999999998875
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.77 E-value=0.012 Score=47.24 Aligned_cols=91 Identities=13% Similarity=-0.016 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCC--ChhcHHHHHHHHHhcCCHHHHHH
Q 037911 502 GEAVSLMDEMLESGMLPDSQICRVLINGYCMEK---DVNKAEALLGFFAKKFQIY--DTESYNAVFNMFAEDGDLSKLME 576 (609)
Q Consensus 502 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 576 (609)
..+.+-|.+..+.+ .++..+...+.+++++.+ ++++++.+++...+.. .| +...+-.+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34445555554444 356666666666666666 4556666666666553 12 23444555556666666666666
Q ss_pred HHHHHHHcCCCCChhhHHHH
Q 037911 577 LQKRFLRLGFAPNNLTCKYM 596 (609)
Q Consensus 577 ~~~~m~~~g~~p~~~~~~~l 596 (609)
.++.+++. .|+..--..+
T Consensus 93 y~~~lL~i--eP~n~QA~~L 110 (152)
T 1pc2_A 93 YVRGLLQT--EPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHH
Confidence 66666644 5554443333
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.75 E-value=0.018 Score=42.39 Aligned_cols=80 Identities=11% Similarity=0.016 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037911 518 PDSQICRVLINGYCMEKD---VNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCK 594 (609)
Q Consensus 518 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 594 (609)
.+...+..+..++...++ .++|..++++..+.. +-++.....+...+.+.|++++|+..|+++++. .|+.....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~--~p~~~~~~ 80 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS--NDPNLDRV 80 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC--CCTTCCHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHH
Confidence 455556666666554433 566777777666552 223455666666677777777777777777644 34433333
Q ss_pred HHHHHH
Q 037911 595 YMIHSL 600 (609)
Q Consensus 595 ~ll~~~ 600 (609)
.+..+.
T Consensus 81 ~i~~~I 86 (93)
T 3bee_A 81 TIIESI 86 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 343333
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.74 E-value=0.034 Score=52.23 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=32.7
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 274 DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444444455555555555555543 3444444455555555555555555555554
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.72 E-value=0.0075 Score=59.17 Aligned_cols=94 Identities=13% Similarity=0.033 Sum_probs=66.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhC-----CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh-----CC-
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVK-----DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD-----VG- 200 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~- 200 (609)
.+..+..+|++++|+.+++++++... .+|....+++.+.. .|...|++++|+.+++++++ .|
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~-------~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMD-------ACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHH-------HHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 35566788999999999999986532 22344566777777 89999999999999998864 22
Q ss_pred -CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 201 -FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 201 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
.+....+++.|...|...|++++|..++++..
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11223356666666777777777766666654
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.69 E-value=0.12 Score=55.79 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=93.8
Q ss_pred hHHHHHHHHhcCCChhHHHH-HHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHh
Q 037911 92 AHEISRVLLRCQSDSVSALT-FFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLI 170 (609)
Q Consensus 92 ~~~~~~~l~~~~~~~~~A~~-~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (609)
...+.-......++++.|.+ ++..+ ++......++..+.+.|.+++|.++.++... -|
T Consensus 601 ~~~~~~~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~----------~f---- 659 (814)
T 3mkq_A 601 LEVLEFQTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ----------KF---- 659 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH----------HH----
T ss_pred cHHHHHhHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcch----------he----
Confidence 33333333344567777765 44111 1122336677777778887777765432211 11
Q ss_pred hccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 037911 171 SCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVF 250 (609)
Q Consensus 171 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 250 (609)
. .....|++++|+++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+
T Consensus 660 ~-------~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~ 717 (814)
T 3mkq_A 660 E-------LALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLH 717 (814)
T ss_dssp H-------HHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHH
T ss_pred e-------hhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHH
Confidence 1 345678888888776532 4567888888888888888888888887754 33455555
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 037911 251 CKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIM 301 (609)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 301 (609)
...|+.+...++.+.....| -++....+|.+.|++++|++++.++
T Consensus 718 ~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 718 SSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 56677666666555555443 1233334455556666666555443
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.66 E-value=0.1 Score=56.31 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=26.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 356 CKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 407 (609)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3456666666554322 245556666666666666666666665543
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.61 E-value=0.087 Score=49.51 Aligned_cols=46 Identities=11% Similarity=0.043 Sum_probs=29.4
Q ss_pred CCCHHhHHHHHHHHH--hC---CChhHHHHHHHHHHHhhCCCCCcHHhHHHHhh
Q 037911 123 KPTSSNYCLIVHILA--WN---NKFSFAMKMLCELVELVKDCPHSVDVFQDLIS 171 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~--~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (609)
+.+..+|...+++.. .. ..+.+|+.+|+++++. .|.....+..+.-
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~ 241 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKAL 241 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 446666666665543 33 3357899999999987 4555666665443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.50 E-value=0.025 Score=41.98 Aligned_cols=59 Identities=17% Similarity=0.314 Sum_probs=39.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHH-hHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVKDCPHSVD-VFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 200 (609)
.+..+...|++++|...++++++. .|.+.. .+..+.. .|...|++++|++.|+++++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~-------~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGN-------AYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhcC
Confidence 455666677777777777777765 344555 6666666 6777777777777777777654
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.49 E-value=0.031 Score=42.15 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=59.4
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCC----CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKD----CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
-++..+..|+..+.+.|+|..|...|+.+++.... ......++..+.. +|.+.|++++|+..++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~-------~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSY-------AVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHH-------HHHHccCHHHHHHHHHHHHhc
Confidence 46777889999999999999999999999987422 2356778888888 899999999999999999985
Q ss_pred C
Q 037911 200 G 200 (609)
Q Consensus 200 ~ 200 (609)
.
T Consensus 76 ~ 76 (104)
T 2v5f_A 76 D 76 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.47 E-value=0.011 Score=58.02 Aligned_cols=91 Identities=10% Similarity=-0.017 Sum_probs=73.1
Q ss_pred hcCCChhHHHHHHHHhhhc----CCCCC--CHHhHHHHHHHHHhCCChhHHHHHHHHHHHh-----hCCCCCcHHhHHHH
Q 037911 101 RCQSDSVSALTFFNWVKND----LEIKP--TSSNYCLIVHILAWNNKFSFAMKMLCELVEL-----VKDCPHSVDVFQDL 169 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~----~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l 169 (609)
..++++++|+.+++.+... .|..| ...+++.++.+|...|+|++|+.+++++++. ++..|.....+..+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3568999999999998753 22222 4678899999999999999999999998865 23445566678888
Q ss_pred hhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 170 ISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
.. .|...|++++|+.+++++.+
T Consensus 378 a~-------~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GK-------LQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HH-------HHHHTTCHHHHHHHHHHHHH
T ss_pred HH-------HHHhcCCHHHHHHHHHHHHH
Confidence 88 99999999999999998865
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.24 E-value=0.051 Score=39.86 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=54.4
Q ss_pred CCCHHhHHHHHHHHHhCCC---hhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 123 KPTSSNYCLIVHILAWNNK---FSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
+.++..+..++.++...++ .++|..+++++++. .|.+......+.. .+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~~~rA~~~lg~-------~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---EPYNEAALSLIAN-------DHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhh
Confidence 4577888888888865544 68999999999987 5567777777777 888999999999999999886
Q ss_pred C
Q 037911 200 G 200 (609)
Q Consensus 200 ~ 200 (609)
.
T Consensus 73 ~ 73 (93)
T 3bee_A 73 N 73 (93)
T ss_dssp C
T ss_pred C
Confidence 5
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.4 Score=39.58 Aligned_cols=127 Identities=12% Similarity=0.185 Sum_probs=86.9
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.++.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 45789999999887765 4577899999999999999999999988654 33455556777888887
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
.++-+.....| -++.....+.-.|+++++.++|.+... .|.. .-.....|..+.|.++.+++
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 77766666554 245555566677888888888755432 2211 11122355666777776655
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.23 E-value=0.24 Score=44.58 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHh-----cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc-CCH
Q 037911 256 VDKVNGFLEKIEEEGFDPD---LVTYNTLISSYCK-----KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE-GKV 326 (609)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~ 326 (609)
...|..++++..+. .|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666655 344 4456666666666 367777777777776654322355555566666663 667
Q ss_pred HHHHHHHHHHHHCCCC
Q 037911 327 REAHQLFHRMVHRGLS 342 (609)
Q Consensus 327 ~~a~~~~~~m~~~g~~ 342 (609)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777665433
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.03 E-value=0.04 Score=41.57 Aligned_cols=65 Identities=12% Similarity=-0.031 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 485 LSTYRALICCFCGIGRSGEAVSLMDEMLESG------MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
..-+..+...+...|+++.|...|+++.+.. -.+...++..|..++.+.|++++|...++++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344455555555566666666555555420 1123444555555555555555555555555543
No 225
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.00 E-value=0.051 Score=40.23 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=40.7
Q ss_pred HHHHHhcCCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 491 LICCFCGIGRSGEAVSLMDEMLESGMLPDSQ-ICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
....+...|++++|+..++++++.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445666777888888887777643 33455 6777777777778888888887777765
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.36 Score=39.88 Aligned_cols=130 Identities=7% Similarity=0.047 Sum_probs=80.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCH
Q 037911 422 IVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRS 501 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 501 (609)
.......|+++.|.++.+.+ .+...|..|.....+.|+++-|++.|....+ +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34455677777777776654 4677788888888888888888888876643 23344445556777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 502 GEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 502 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 581 (609)
++-.++-+.....| + ++.....+...|+++++.+++.+.-+ |..-+-.....|-.+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 76666666665544 1 33444556667888888888753321 111122222356667777777665
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.69 E-value=0.53 Score=36.43 Aligned_cols=84 Identities=12% Similarity=-0.051 Sum_probs=51.9
Q ss_pred CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHH
Q 037911 498 IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMEL 577 (609)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 577 (609)
.|+.......+-.+ .-++..+...++.+..+|+-+.-.+++..+.. ...|++...-.+..+|.+.|+..+|.++
T Consensus 74 C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 34444444444443 12445556666677777777777777766543 2256666677777777777777777777
Q ss_pred HHHHHHcCCC
Q 037911 578 QKRFLRLGFA 587 (609)
Q Consensus 578 ~~~m~~~g~~ 587 (609)
++++.++|++
T Consensus 148 l~~AC~kG~k 157 (172)
T 1wy6_A 148 LIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHhhhH
Confidence 7777777653
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.61 E-value=0.57 Score=36.26 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=72.5
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
+.-.|.+++..++..+... ..+..-||-++.-....-+-+-..++++..-+. .| ...+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHH
Confidence 3445666777777766665 345556666665555555555555555554321 11 1123333333
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
..-+-.+- .+....+..++....+|+-++-.+++.++.. +.+|+....-.+..+|.+.|+..+|.+++.+..+.
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33332221 1334445555555666666666666666433 22345555555666666666666666666666665
Q ss_pred CC
Q 037911 340 GL 341 (609)
Q Consensus 340 g~ 341 (609)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 54
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.60 E-value=0.2 Score=45.05 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-CCH
Q 037911 221 IDQCWQVYEEMGRIGICPN---THTFNILTHVFCKN-----GDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK-GRL 291 (609)
Q Consensus 221 ~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 291 (609)
...|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4677888888877 4566 56888899999984 99999999999999885322477788888888884 999
Q ss_pred hHHHHHHHHHhhCCcc--CCHhhHHHH
Q 037911 292 NDAFYLYRIMYRRNVL--PDLVTYTTL 316 (609)
Q Consensus 292 ~~a~~~~~~~~~~~~~--p~~~~~~~l 316 (609)
+++.+.+++.....+. |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999998776 665444433
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.42 E-value=0.14 Score=41.06 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCChHHHH
Q 037911 186 IRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN---CIDQCWQVYEEMGRIGICP--NTHTFNILTHVFCKNGDVDKVN 260 (609)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 260 (609)
...+.+.|.+..+.| +++..+...+..++++.+ ++++++.++++..+.+ .| +...+-.|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345566666666655 467777777888888877 5668888888887753 23 3455566777788888888888
Q ss_pred HHHHHHHHc
Q 037911 261 GFLEKIEEE 269 (609)
Q Consensus 261 ~~~~~~~~~ 269 (609)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888876
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.14 E-value=0.15 Score=40.45 Aligned_cols=65 Identities=9% Similarity=0.111 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037911 533 EKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHS 599 (609)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 599 (609)
.+|.++|.++|+.+++.+... ...|-....--.++|+.+.|.+++.+.+..+-+| ...+.+.|..
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 366777777777776543232 4455555555566777777777777777554333 2333444433
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.08 E-value=0.12 Score=39.99 Aligned_cols=87 Identities=9% Similarity=-0.094 Sum_probs=51.6
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHcCCCC--ChhcHHHHHHHHHhcCCHHHHH
Q 037911 501 SGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNK---AEALLGFFAKKFQIY--DTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 501 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
...+.+-|.+....| .++..+-..+.+++++..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444555444434 3666666667777777665554 666666666542 12 2234455556677777777777
Q ss_pred HHHHHHHHcCCCCChh
Q 037911 576 ELQKRFLRLGFAPNNL 591 (609)
Q Consensus 576 ~~~~~m~~~g~~p~~~ 591 (609)
+.++.+++. .|+..
T Consensus 95 ~~~~~lL~~--eP~n~ 108 (126)
T 1nzn_A 95 KYVRGLLQT--EPQNN 108 (126)
T ss_dssp HHHHHHHHH--CTTCH
T ss_pred HHHHHHHHh--CCCCH
Confidence 777777754 56543
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.73 E-value=5.4 Score=42.62 Aligned_cols=152 Identities=14% Similarity=0.148 Sum_probs=76.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhh---C--------CCCCc
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELV---K--------DCPHS 162 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~--------~~~~~ 162 (609)
.+.-.+.-.-|+++.|++|--.+....+.....+--..++.-+. ..|.+..... . -.+.-
T Consensus 74 lvaSkvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~ci---------d~y~~~~~~~~~~~~~~~~~~~id~rL 144 (963)
T 4ady_A 74 LIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSI---------EMYVQEASKQYTKDEQFYTKDIIDPKL 144 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHH---------HHHHHHHHHHHHHCTTGGGSSCSCHHH
T ss_pred HHHHHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHH---------HHHHHHHhhccccccccccccccCHHH
Confidence 34444445558999999998887765555444333334443222 2222221110 0 01112
Q ss_pred HHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC---------C-----CCHHHHHHHHHHHHhcCCh-------
Q 037911 163 VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF---------Q-----PSIVSCNFLLNGLLKLNCI------- 221 (609)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---------~-----~~~~~~~~ll~~~~~~~~~------- 221 (609)
..+...++. .+.+.|...+|+.+.-+..+.+. . .-...+..++.+....-..
T Consensus 145 ~~Lv~~iv~-------~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~v 217 (963)
T 4ady_A 145 TSIFERMIE-------KCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSI 217 (963)
T ss_dssp HHHHHHHHH-------HHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHH-------HHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHH
Confidence 234455555 56677777777666544332110 0 0022334444433322222
Q ss_pred -HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 222 -DQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEE 268 (609)
Q Consensus 222 -~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 268 (609)
+.+.++|.++. .| -|..++.+..+.++.+.+.++|.++.+
T Consensus 218 Lr~l~~Iy~k~~----~~---dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 218 LRKSFDFLMNMP----NC---DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHSS----SC---CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC----ch---hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22333333321 12 355567777888999999999998764
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.65 E-value=1.5 Score=34.88 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=27.0
Q ss_pred CCCHHhHHHHHHHHHhCCCh------hHHHHHHHHHHHh
Q 037911 123 KPTSSNYCLIVHILAWNNKF------SFAMKMLCELVEL 155 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~ 155 (609)
+.|.++|...+..+-+.|+. ++.+++|+.++..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 44788888888888888888 7888888888876
No 235
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.54 E-value=1.7 Score=48.68 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=36.7
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHH
Q 037911 103 QSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELV 153 (609)
Q Consensus 103 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 153 (609)
.+.++.|.++..|... ++.+...++.++...|++++|...|.++.
T Consensus 825 ~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 825 FKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred hhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3577888888888753 56667888999999999999999997764
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.30 E-value=0.48 Score=36.53 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHH
Q 037911 464 DSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGE---AVSLMDEMLESGMLP--DSQICRVLINGYCMEKDVNK 538 (609)
Q Consensus 464 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 538 (609)
.....+.+-|.+....|. ++..+--.+..++.+..+..+ ++.++++..+.+ .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344455555655555444 666666667777777766655 778888877643 23 23344556777888888888
Q ss_pred HHHHHHHHHHc
Q 037911 539 AEALLGFFAKK 549 (609)
Q Consensus 539 A~~~~~~~~~~ 549 (609)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888876
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.97 E-value=9e-06 Score=77.46 Aligned_cols=226 Identities=11% Similarity=0.156 Sum_probs=120.8
Q ss_pred CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 037911 161 HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT 240 (609)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 240 (609)
..+.+|..+.+ ++.+.|++.+|++.|-+. .|+..|..++.+..+.|.+++-...+...++..-.|
T Consensus 52 n~p~VWs~Lgk-------AqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~-- 116 (624)
T 3lvg_A 52 NEPAVWSQLAK-------AQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-- 116 (624)
T ss_dssp CCCCCSSSHHH-------HTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--
T ss_pred CCccHHHHHHH-------HHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--
Confidence 34455666666 677777787777766433 344467777888888888888888777666543333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHH
Q 037911 241 HTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGL 320 (609)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 320 (609)
..=+.|+-+|++.+++.+.++++. .||..-...+.+-|...|.++.|.-+|..+.. |.-|...+
T Consensus 117 ~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstL 180 (624)
T 3lvg_A 117 YVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTL 180 (624)
T ss_dssp TTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSS
T ss_pred ccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHH
Confidence 333467778888888665544432 35666667777777777777777666644322 22222233
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHH
Q 037911 321 CKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSAL 400 (609)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 400 (609)
.+.|++..|.+.-++ .-+..||..+-.+|...+++.-|.-.--.++-. +| -...++..|-..|.+++.+
T Consensus 181 V~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELI 249 (624)
T 3lvg_A 181 VHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELI 249 (624)
T ss_dssp SSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTST
T ss_pred HHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHH
Confidence 334444333321111 123445555555555555554444333222211 11 1122334445555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037911 401 NLVVELQRFGVSISRDIYDYLIVALCQDN 429 (609)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 429 (609)
.+++...... ......|+-+.-.|++-.
T Consensus 250 sLlEaglglE-rAHmGmFTELaILYsKY~ 277 (624)
T 3lvg_A 250 TMLEAALGLE-RAHMGMFTELAILYSKFK 277 (624)
T ss_dssp TTHHHHTTST-TCCHHHHHHHHHHHHSSC
T ss_pred HHHHHHhCCC-chhHHHHHHHHHHHHhcC
Confidence 5555444321 234445555555555443
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.58 E-value=1.4 Score=34.09 Aligned_cols=79 Identities=13% Similarity=-0.041 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 037911 516 MLPDSQICRVLINGYCMEKD---VNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLT 592 (609)
Q Consensus 516 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 592 (609)
-.|+..+--.+.+++++..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+++ +.|+..-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHH
Confidence 35677777777888887765 446777887777664211235566677788888888888888888884 4777654
Q ss_pred HHHH
Q 037911 593 CKYM 596 (609)
Q Consensus 593 ~~~l 596 (609)
-..|
T Consensus 114 A~~L 117 (134)
T 3o48_A 114 VGAL 117 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.49 E-value=3.2 Score=32.65 Aligned_cols=74 Identities=14% Similarity=-0.039 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 037911 517 LPDSQICRVLINGYCMEKD---VNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLT 592 (609)
Q Consensus 517 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 592 (609)
.|+..+-..+.+++++..+ ..+++.+++.+.+.+..-.....-.+.-++.+.|++++|.++.+.+++. .|+..-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHH
Confidence 4566666666666666654 3356666666665422112244455556677777777777777777744 565433
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.28 E-value=2.9 Score=40.19 Aligned_cols=66 Identities=9% Similarity=0.048 Sum_probs=38.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHH
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEE-----EGFDPDLV 276 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 276 (609)
.++..+...|+..+|...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|...
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34555556666666666666655432 34555666666666666666666666665433 25555544
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.90 E-value=1.5e-05 Score=76.07 Aligned_cols=264 Identities=15% Similarity=0.150 Sum_probs=132.5
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 275 LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFA 354 (609)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 354 (609)
+..|..|..+....+++.+|++-|-+. -|...|..++.+..+.|.+++-.+++....+. ..+...=+.|+.+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 345566666666666666555443211 14455666666666666666666666554443 2233334456666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 037911 355 YCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAA 434 (609)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 434 (609)
|++.++..+..+++ -.||..-...+.+-|...|.++.|.-+|..+.. |..+...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence 66666655433332 124555555566666666666666555543322 22233333444443333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHC
Q 037911 435 TSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLES 514 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (609)
.+.-++ ..++.+|..+-.+|...+.+.-|...--.++-. | .....++..|-..|.+++-+.+++.....
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 322111 234456666666666666666554443333311 1 11223445566667777777777666632
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-------ChhcHHHHHHHHHhcCCHHHHH
Q 037911 515 GMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIY-------DTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 515 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
. .....+|+-|.-.|++- +.++-.+.++.....-..| ....|..++-.|.+-.+++.|.
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 1 34555666666666654 3333333333222111111 2234666666777767776654
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.71 E-value=11 Score=36.97 Aligned_cols=192 Identities=15% Similarity=0.117 Sum_probs=97.0
Q ss_pred CChhHHHHHHHHHHHhh---CCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh-CCCCCCHHH--HHHHHH
Q 037911 140 NKFSFAMKMLCELVELV---KDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD-VGFQPSIVS--CNFLLN 213 (609)
Q Consensus 140 ~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~--~~~ll~ 213 (609)
|++++|.+.+-.+.+.. .+.+....+...++. .+...|+++...+.+..+.+ +|..+...+ -+.++.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~-------l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~ 102 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVD-------LLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVME 102 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHH-------HHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH-------HHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566666554444331 223445566667777 77888888888777766554 232222211 111222
Q ss_pred HHHhcCChHH--HHHHHHHHhh--CC-CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC---HHhHHH
Q 037911 214 GLLKLNCIDQ--CWQVYEEMGR--IG-ICP---NTHTFNILTHVFCKNGDVDKVNGFLEKIEEE--GFDPD---LVTYNT 280 (609)
Q Consensus 214 ~~~~~~~~~~--a~~~~~~m~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~ 280 (609)
.+......+. -..+.+.... .| +-. .......|...+...|++.+|.+++..+... |.... ...+..
T Consensus 103 ~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~ 182 (445)
T 4b4t_P 103 YLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILE 182 (445)
T ss_dssp HHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHH
T ss_pred HHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 2222232221 1111111110 01 111 1122345667777777777777777776543 21111 234555
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhh----CCccCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 281 LISSYCKKGRLNDAFYLYRIMYR----RNVLPD--LVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~~~~----~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
.++.|...+++..|..+++++.. ....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 183 QMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66777777777777777776532 212222 22345555666666777777666666543
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.44 E-value=11 Score=36.78 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCccCH--HHH
Q 037911 315 TLMNGLCKEGKVREAHQLFHRMVHR--GLSPD---IVSYNTLIFAYCKEGKMQESKSLLYEMMG----NGIYPDT--FTC 383 (609)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~--~~~ 383 (609)
.|...+...|++.+|.+++.++... |.... ...+...+..|...+++..|..++.++.. ....|+. .-+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 4555566666666666666665432 21111 23444555666666777666666665432 1112221 234
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Q 037911 384 QIIVQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 384 ~~l~~~~~~~~~~~~A~~~~~~~~ 407 (609)
...+..+...+++.+|...|.++.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555566666666666665553
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.81 E-value=0.92 Score=47.34 Aligned_cols=52 Identities=13% Similarity=0.023 Sum_probs=34.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 528 NGYCMEKDVNKAEALLGFFAKKFQIYD-TESYNAVFNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 528 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 581 (609)
.-|...|+++-|+++.++.+.. .|+ ..+|..|..+|...|+++.|+-.+..|
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445567777777777776655 443 467777777777777777777666665
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.34 E-value=1.9 Score=41.37 Aligned_cols=122 Identities=10% Similarity=-0.007 Sum_probs=77.3
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHH-HHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHH
Q 037911 103 QSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFA-MKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYV 181 (609)
Q Consensus 103 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (609)
.+++..|...++.+.....-.+=+... ...|-.+ ...+++.. ..+...++. .+.
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~---------~~~w~~~~r~~l~~~~---------~~a~~~~~~-------~~l 182 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLR---------DFQFVEPFATALVEDK---------VLAHTAKAE-------AEI 182 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGT---------TSTTHHHHHHHHHHHH---------HHHHHHHHH-------HHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCC---------chhHHHHHHHHHHHHH---------HHHHHHHHH-------HHH
Confidence 478889999998888643322211110 0111111 12222222 223444555 677
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHHHHHHHHHHH
Q 037911 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR-----IGICPNTHTFNILTHVF 250 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l~~~~ 250 (609)
..|++++|+..++.+.... +.+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+-...-..+
T Consensus 183 ~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il 255 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 255 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 8888888888888887754 78888888888888888888888888887643 48888877654443333
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.14 E-value=4.2 Score=29.61 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=48.0
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 037911 500 RSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFN 563 (609)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 563 (609)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+-.. ...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 55567777777777788899999999999999999999999999888766422 2445766654
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.84 E-value=4.4 Score=29.48 Aligned_cols=73 Identities=10% Similarity=0.082 Sum_probs=58.2
Q ss_pred HHHHccC-CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 528 NGYCMEK-DVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 528 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
..+-+.. |.-+..+-++.+......|++.+..+.+++|.+.+++.-|+++++-.+.+ ..+...+|..+++.+.
T Consensus 17 ~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqElk 90 (109)
T 1v54_E 17 TYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELR 90 (109)
T ss_dssp HHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHH
T ss_pred HHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHHh
Confidence 3333444 66678888888888888999999999999999999999999999999866 3344567888887654
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.40 E-value=13 Score=34.11 Aligned_cols=109 Identities=9% Similarity=0.068 Sum_probs=58.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHH----HHHHHHhCCCCCCHHH
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFK----TFRKTLDVGFQPSIVS 207 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~~ 207 (609)
+..-|.+++++++|++++..-.. .+.+.|+...|-+ +.+...+.+.+++...
T Consensus 39 l~~Ry~~~~~~~eAidlL~~ga~------------------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~ 94 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQGAL------------------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDIS 94 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH------------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH------------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence 34456677778877777655432 2334444444433 3444445667777777
Q ss_pred HHHHHHHHHhcCChH-HHHHHHHHHh----hCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 208 CNFLLNGLLKLNCID-QCWQVYEEMG----RIG--ICPNTHTFNILTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~-~a~~~~~~m~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (609)
...++..+......+ .-.++.+++. +.| ..-+......+...|.+.|++.+|+..|-
T Consensus 95 ~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 95 VARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 666666665432211 1122233332 222 12355666677777777777777766554
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.36 E-value=1.9 Score=45.12 Aligned_cols=51 Identities=8% Similarity=-0.068 Sum_probs=35.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 037911 355 YCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVEL 406 (609)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 406 (609)
+...|+++-|+.+-++.... .+-+..+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44567777777777777654 1224567777777777777777777777665
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.50 E-value=20 Score=34.12 Aligned_cols=93 Identities=13% Similarity=0.011 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCccCHHHHHHH-
Q 037911 315 TLMNGLCKEGKVREAHQLFHRMVHRGLSPD-----IVSYNTLIFAYCKEGKMQESKSLLYEMMGN--GIYPDTFTCQII- 386 (609)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l- 386 (609)
-++..|...|++.+|.+++.++.+.--..| ..+|..-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466777777888887777777765311111 234555666777788888888777766532 122333222111
Q ss_pred ---HHHHH-ccCCHHHHHHHHHHHH
Q 037911 387 ---VQGYG-KEGRLLSALNLVVELQ 407 (609)
Q Consensus 387 ---~~~~~-~~~~~~~A~~~~~~~~ 407 (609)
...+. ..++|..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22345 6788888877776553
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.34 E-value=7.2 Score=30.14 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=53.2
Q ss_pred HHHHHHHHHHh-cCC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 037911 486 STYRALICCFC-GIG-RSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFN 563 (609)
Q Consensus 486 ~~~~~li~~~~-~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 563 (609)
.-|..-...|. +.. +.-+..+-++.+....+.|++.+....+.+|.+.+|+..|.++|+-++.+- .+...+|..++.
T Consensus 52 EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 52 EEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33443333333 444 555677777777777888889888888899999999999999888887654 233445766654
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.21 E-value=35 Score=36.60 Aligned_cols=314 Identities=11% Similarity=-0.017 Sum_probs=164.5
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCC--ccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 037911 283 SSYCKKGRLNDAFYLYRIMYRRN--VLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGL-------SPDIVSYNTLIF 353 (609)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-------~p~~~~~~~li~ 353 (609)
-+....|+.++++.++......+ -.+....-..+.-+....|..+++..++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 45667888888888887766421 111222333344455666766678887777664311 011112222323
Q ss_pred HHHHcCC-hHHHHHHHHHHHHCCCccCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hc
Q 037911 354 AYCKEGK-MQESKSLLYEMMGNGIYPDT--FTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALC--QD 428 (609)
Q Consensus 354 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~ 428 (609)
++.-.|. -+++.+.+..++...- +.. ..-..+...+...|+-+....++..+.+. .+..+...+..++. ..
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhC
Confidence 3333332 2456666666665321 111 12223344466778888777787777664 24444444544444 67
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 037911 429 NRPFAATSLLERIGQDGYVPSLEIY--NELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVS 506 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 506 (609)
|+.+.+..+++.+.... .|....- .++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88777777777776532 2222222 234456778899888888888887642 1233333333344555677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCChhcHHHHHHHHH--hcC-------CHHHHHH
Q 037911 507 LMDEMLESGMLPDSQICRVLINGYCMEKDV-NKAEALLGFFAKKFQIYDTESYNAVFNMFA--EDG-------DLSKLME 576 (609)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g-------~~~~A~~ 576 (609)
+++.+.+.+ .|....-..+.-+....|+. .+|..++..+.. .+|..+-..-+-++. -.| +....++
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~ 691 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 777666543 34433333444444444443 677888888874 344433323333333 333 2333334
Q ss_pred HHHHHHHc-CCCCChhhHHHHHHHHhccccc
Q 037911 577 LQKRFLRL-GFAPNNLTCKYMIHSLWKGMER 606 (609)
Q Consensus 577 ~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~ 606 (609)
.+...... .-.++...-..+-.|+...|+.
T Consensus 692 ~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 692 NFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 33333322 2233444444555666665543
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.98 E-value=18 Score=33.07 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=60.0
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH----HHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQ----VYEEMGRIGICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~l~~~~~~~g 254 (609)
-|.+.+++++|++++..- ...+.+.|+...|-+ +.+-..+.+++++......++..+....
T Consensus 42 Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 42 RYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 577888888888876543 223455666655444 3444556677788777777777665533
Q ss_pred ChH-HHHHHHHHHH----HcC--CCCCHHhHHHHHHHHHhcCCHhHHHHHH
Q 037911 255 DVD-KVNGFLEKIE----EEG--FDPDLVTYNTLISSYCKKGRLNDAFYLY 298 (609)
Q Consensus 255 ~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 298 (609)
.-+ .-.++++.+. +.| ..-++.....+...|.+.|++.+|...|
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 211 1122333322 121 1125556666667777777777766655
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.94 E-value=9.1 Score=29.59 Aligned_cols=44 Identities=5% Similarity=-0.009 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 539 AEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 539 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
..+-++.+......|++.+..+.+++|.+.+++.-|+++++-.+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444434444444444444444444444444444444444
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.63 E-value=17 Score=40.70 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=86.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHh--------------------hCC
Q 037911 246 LTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMY--------------------RRN 305 (609)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--------------------~~~ 305 (609)
++..+.+.+..+.+.++..-. +.+...--.+..+|...|++++|.+.|++.. ...
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455555555555443322 1233333344455666666666666664431 100
Q ss_pred --ccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC
Q 037911 306 --VLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD----IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPD 379 (609)
Q Consensus 306 --~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 379 (609)
...-..-|..++..+.+.+.++.+.++-....+....-+ ...|..+...+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 111234467777788888888888777766655421111 12567778888888888888888877765533 3
Q ss_pred HHHHHHHHHHHHccCCHHHHHH
Q 037911 380 TFTCQIIVQGYGKEGRLLSALN 401 (609)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~A~~ 401 (609)
......++...|..|..+.-+.
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhC
Confidence 4567777777777776665543
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.29 E-value=3.7 Score=33.26 Aligned_cols=52 Identities=6% Similarity=-0.047 Sum_probs=34.5
Q ss_pred CChhHHHHHHHHhhhcCCCCCC-------HHhHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 104 SDSVSALTFFNWVKNDLEIKPT-------SSNYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
+.++.|.-+.+.+..-.+..++ ..++..+++++...|+|..|...|+++++.
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4566665555554432212222 246677889999999999999999998765
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.97 E-value=21 Score=32.90 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHH
Q 037911 484 SLSTYRALICCFCGIGRSGEAVSLM 508 (609)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~ 508 (609)
|+.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5555566667777777777776666
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.90 E-value=11 Score=29.16 Aligned_cols=12 Identities=25% Similarity=0.266 Sum_probs=4.3
Q ss_pred hcCCHHHHHHHH
Q 037911 322 KEGKVREAHQLF 333 (609)
Q Consensus 322 ~~~~~~~a~~~~ 333 (609)
+.|++++|.+..
T Consensus 90 klgdY~~Ar~y~ 101 (134)
T 3o48_A 90 KLGEYSMAKRYV 101 (134)
T ss_dssp HHTCHHHHHHHH
T ss_pred HhhhHHHHHHHH
Confidence 333333333333
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.03 E-value=29 Score=32.03 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=16.5
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHH
Q 037911 274 DLVTYNTLISSYCKKGRLNDAFYLY 298 (609)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~ 298 (609)
|+.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4555566667777777777776655
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.85 E-value=11 Score=31.74 Aligned_cols=56 Identities=14% Similarity=-0.045 Sum_probs=38.8
Q ss_pred CCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 037911 498 IGRSGEAVSLMDEMLESGMLP-DSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIY 553 (609)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 553 (609)
.+...++..+|..|...|+-. -...|......+...|++.+|.++|+..++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444667778888777766543 34567777777778888888888887777665444
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.08 E-value=25 Score=34.13 Aligned_cols=53 Identities=17% Similarity=0.008 Sum_probs=33.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDV--GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEM 231 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 231 (609)
.|.+.|++++|.+.|.++.+. +...-+..+-.+++.+...+++..+...+++.
T Consensus 140 ~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 140 YYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 677777777777777777652 22233445556666666666666666666655
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.62 E-value=27 Score=33.85 Aligned_cols=115 Identities=8% Similarity=-0.102 Sum_probs=76.9
Q ss_pred HHHHHhhhc-CCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHH
Q 037911 111 TFFNWVKND-LEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRES 189 (609)
Q Consensus 111 ~~f~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A 189 (609)
....++.+. .+..--..++..+++.+.+.|+++.|.+.+.++.....+.....+.+..+++ .+...+++..+
T Consensus 115 ~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~ir-------l~l~~~d~~~~ 187 (429)
T 4b4t_R 115 EKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIAR-------LGFFYNDQLYV 187 (429)
T ss_dssp HHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHH-------HHHHHTCHHHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-------HHHHhccHHHH
Confidence 334455442 3333345678889999999999999999999999875555567788888888 89999999999
Q ss_pred HHHHHHHHh---CCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHh
Q 037911 190 FKTFRKTLD---VGFQPSIVSC--NFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 190 ~~~~~~~~~---~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
...++++.. .+..++...- ..-...+...+++..|-..|-+..
T Consensus 188 ~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 188 KEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHh
Confidence 999988764 2222222110 011112234566777766665553
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.77 E-value=25 Score=27.60 Aligned_cols=12 Identities=25% Similarity=0.266 Sum_probs=4.2
Q ss_pred hcCCHHHHHHHH
Q 037911 322 KEGKVREAHQLF 333 (609)
Q Consensus 322 ~~~~~~~a~~~~ 333 (609)
+.|++++|.++.
T Consensus 89 kl~~Y~~Ar~y~ 100 (144)
T 1y8m_A 89 KLGEYSMAKRYV 100 (144)
T ss_dssp TTTCHHHHHHHH
T ss_pred HhhhHHHHHHHH
Confidence 333333333333
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.89 E-value=30 Score=28.02 Aligned_cols=125 Identities=10% Similarity=0.001 Sum_probs=71.2
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC---c---HHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH---S---VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
+..++..-+..+...|.|+.|+-+.+-++...+..+. . ..++..+.. ++...|++..|...|+++++
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~lad-------alf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHAD-------SLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHH-------HHHcccHHHHHHHHHHHHHH
Confidence 3444555577889999999999998887765322211 1 123444455 78899999999999999765
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 199 VG--FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 199 ~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
.. +..+..++..+. ....... ......+...---+..+|.+.|++++|+.+++.+..+
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 21 111111111110 0000000 0112234444455778888999999999998887544
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.08 E-value=23 Score=25.74 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=27.8
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037911 283 SSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG 340 (609)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 340 (609)
..+...|++++|+.+.+.+ +.||...|..|.. .+.|--+++...+..+...|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3455566666666555433 2456665554433 34555555555555555543
No 266
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.82 E-value=9.2 Score=37.68 Aligned_cols=65 Identities=12% Similarity=-0.037 Sum_probs=42.9
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCC-CCcH---HhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDC-PHSV---DVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
...++.+++.|...+.++.|..+..... .+.. ..+. ..+-.+++ .+.-.+++.+|.+.+..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GR-------I~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSK-------INAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHH-------HHHHhccHHHHHHHHHHHHHh
Confidence 5667788888888899999988887763 1111 1111 12222333 677888888888888887764
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=72.08 E-value=24 Score=28.16 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037911 539 AEALLGFFAKKFQIYD-TESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPN 589 (609)
Q Consensus 539 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (609)
+.++|..|...++.-. ...|......+...|++++|.++|+.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5556666665555322 24455566666666666666666666665555553
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.68 E-value=26 Score=25.36 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=28.1
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037911 283 SSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG 340 (609)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 340 (609)
..+...|++++|+.+.+.+ +.||...|..|.. .+.|--+++...+..+...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3455566666666554332 2556665554433 35566666666555555554
No 269
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.40 E-value=32 Score=27.84 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=25.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 037911 504 AVSLMDEMLESGMLPD-SQICRVLINGYCMEKDVNKAEALLGFFAKKF 550 (609)
Q Consensus 504 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (609)
+..+|..|...|+-.. ...|......+...|++.+|.++|+..++.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4555555555544322 3345555555556666666666666555543
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.81 E-value=60 Score=27.29 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC
Q 037911 256 VDKVNGFLEKIEEEGFDPD-LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP 308 (609)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 308 (609)
...+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555555544322 3344455555555555555555555555554444
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=65.80 E-value=33 Score=30.37 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=76.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHcc
Q 037911 458 ESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQ----ICRVLINGYCME 533 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 533 (609)
....+.|++++|+.....-++... -|...-..++..+|-.|+++.|.+-++...+. .|+.. .|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence 456778999999999888887653 56667778889999999999999999888764 45433 34444432
Q ss_pred CCHHHHHHHHHHHHHcCCCC-----ChhcHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 037911 534 KDVNKAEALLGFFAKKFQIY-----DTESYNAVFNMFA--EDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 534 g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 584 (609)
+..=.+....+..| ...-...++.++. ..|+.++|.++-.++.+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222222222222 2233455566554 469999999999998764
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.21 E-value=65 Score=30.12 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC--HhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037911 453 YNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGR--SGEAVSLMDEMLESGMLPDSQICRVL 526 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l 526 (609)
.+.++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+...+++..+...|+-+.......+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 456677777788888888888887532111 12334444455554332 34567777777777765554444433
No 273
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=61.26 E-value=56 Score=28.37 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 105 DSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 105 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
+.+..-+-++|... .---++++...++|++|..++++..+.
T Consensus 7 ~~~~~~~~~~wl~~----------~~deLDv~IA~r~feeAv~lle~~~~~ 47 (235)
T 2d2s_A 7 DMSSTAQRLKFLDE----------GVEEIDIELARLRFESAVETLLDIESQ 47 (235)
T ss_dssp CCCHHHHHHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcccchhHHHHHc----------ccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55566667777764 223577888999999999999888765
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.76 E-value=1.2e+02 Score=30.00 Aligned_cols=65 Identities=11% Similarity=0.148 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCH--HHH-HHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGI-CPNT--HTF-NILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
...+|.+++.|...+.++.|..+..+..--.. .++. ..| -.+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45677788888888888888888877642100 0111 122 23455566677777777777776654
No 275
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=57.36 E-value=77 Score=25.77 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=58.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC--CCHHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ--PSIVSCNF 210 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ 210 (609)
--.+.-.|.+..+.-++... ..-.+..|..+ .|-+..++..|+..++.+++..+. ||+..-
T Consensus 40 ~I~LyyngEY~R~Lf~L~~l------NT~Ts~YYk~L---------Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~-- 102 (242)
T 3kae_A 40 SIVLYLNGEYTRALFHLHKL------NTCTSKYYESL---------CYKKKKDYKKAIKSLESILEGKVERDPDVDAR-- 102 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHTC------CBHHHHHHHHH---------HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH--
T ss_pred hhhhhhcchHhHHHHHHHhc------chHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhcccccCcccccc--
Confidence 34456678888877665432 22234445555 688999999999999999865443 322210
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 211 LLNGLLKLNCIDQCWQVYEEMGRIGICPN-THTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
++.|.-. +.| ...++.+...+...|+.++|+..+..--..
T Consensus 103 -----------------~~~ffvd--~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 103 -----------------IQEMFVD--PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp -----------------HHTTSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------cceeeec--cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 0111110 123 334455555666667777777776655443
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.94 E-value=33 Score=30.44 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=9.4
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 037911 211 LLNGLLKLNCIDQCWQVYE 229 (609)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~ 229 (609)
.+...++.|+.+.+..+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444455566554444443
No 277
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=52.42 E-value=17 Score=23.45 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=35.2
Q ss_pred hhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCC
Q 037911 81 NDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPT 125 (609)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~ 125 (609)
..|+...|+++...+..+|..+.++.+.|...+-.+.. .++.|+
T Consensus 14 ~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~-~~~~~~ 57 (59)
T 1wgl_A 14 KAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE-EPSGPS 57 (59)
T ss_dssp HHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC-CCCSCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC-CCCCCC
Confidence 44666789999999999999999999999999887763 444443
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=50.94 E-value=36 Score=30.20 Aligned_cols=46 Identities=24% Similarity=0.153 Sum_probs=21.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---hHHHHHHHHHhcCCHhHHH
Q 037911 246 LTHVFCKNGDVDKVNGFLEKIEEEGFDPDLV---TYNTLISSYCKKGRLNDAF 295 (609)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~ 295 (609)
.+...++.|+++.+..+++ .|..++.. .-.+.+...+..|+.+-+.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 56 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVE 56 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHH
Confidence 4445566777765555544 33333211 1123344455566654333
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.35 E-value=44 Score=28.59 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 037911 502 GEAVSLMDEMLESGMLPD-SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIY 553 (609)
Q Consensus 502 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 553 (609)
+++..+|..|...|+-.. ...|......+...|++.+|.++|+..++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466677777777665433 4456677777777777777777777777654443
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.98 E-value=1.5e+02 Score=25.76 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 037911 315 TLMNGLCKEGKVREAHQLFHR 335 (609)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~ 335 (609)
..+..+.+.|+.++|.++|=+
T Consensus 96 ~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 96 SGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCChhHHHHHHHH
Confidence 333444444554444444433
No 281
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=44.50 E-value=1.2e+02 Score=24.39 Aligned_cols=20 Identities=15% Similarity=-0.002 Sum_probs=13.9
Q ss_pred cCChHHHHHHHHHHhhCCCC
Q 037911 218 LNCIDQCWQVYEEMGRIGIC 237 (609)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~ 237 (609)
..++....++|+.++..|+.
T Consensus 130 ~~~l~~i~~~Y~~Lk~~G~~ 149 (163)
T 1x5b_A 130 DPQFSLISATIKSMKEEGIT 149 (163)
T ss_dssp CSTTHHHHHHHHHHHTTTCC
T ss_pred CcccHHHHHHHHHHHHcCCC
Confidence 34466677788888887754
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.98 E-value=98 Score=26.38 Aligned_cols=24 Identities=4% Similarity=-0.056 Sum_probs=12.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCC
Q 037911 213 NGLLKLNCIDQCWQVYEEMGRIGI 236 (609)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~ 236 (609)
...++.|+.+.+..+++.+.+.|.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 334455666666666555544443
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.78 E-value=68 Score=27.44 Aligned_cols=85 Identities=13% Similarity=0.156 Sum_probs=43.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhh--HHHHHHHHHh
Q 037911 247 THVFCKNGDVDKVNGFLEKIEEEGFDPDLVT--YNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVT--YTTLMNGLCK 322 (609)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~ll~~~~~ 322 (609)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4445677888887777777666655444221 12233444556665433 33344444433211 1123344456
Q ss_pred cCCHHHHHHHHHH
Q 037911 323 EGKVREAHQLFHR 335 (609)
Q Consensus 323 ~~~~~~a~~~~~~ 335 (609)
.|+.+-+..+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 6666655555544
No 284
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.43 E-value=1.2e+02 Score=24.05 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 037911 279 NTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK--VREAHQLFHRMVHRGLS 342 (609)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~ 342 (609)
+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34555566666666666666665421111 12222333333333222 34455555555555433
No 285
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=42.80 E-value=95 Score=22.58 Aligned_cols=77 Identities=10% Similarity=0.020 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 037911 184 GLIRESFKTFRKTLDVGFQPSIVSCNFLL--NGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNG 261 (609)
Q Consensus 184 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 261 (609)
...++|..+-+-+...+ + .....+| ..+...|++++|..+.+.+. .||...|..|.. .+.|-.+++..
T Consensus 20 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 34566666666665533 2 2233333 34566777777777665543 477777665543 46677777777
Q ss_pred HHHHHHHcC
Q 037911 262 FLEKIEEEG 270 (609)
Q Consensus 262 ~~~~~~~~~ 270 (609)
.+..+...|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 776666655
No 286
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=42.55 E-value=2.9e+02 Score=28.13 Aligned_cols=118 Identities=7% Similarity=-0.102 Sum_probs=57.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHC------------CCCC------
Q 037911 457 MESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLES------------GMLP------ 518 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~~~p------ 518 (609)
+....+.|+++.|...|+.|..... ......--+..++...|+.++|..+|+.+.+. |.++
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~ 370 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDK 370 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCC
Confidence 3333455666666666665543211 12222333444555566666666666555321 1100
Q ss_pred ------CHH---HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 037911 519 ------DSQ---ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQ 578 (609)
Q Consensus 519 ------~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (609)
... ....-+..+...|....|...+..+.+. .+......+.......|.++.++...
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 000 0112344566778888888877776643 23333334444445566666655443
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.48 E-value=1.3e+02 Score=23.97 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCcc
Q 037911 259 VNGFLEKIEEEGFDPD-LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVL 307 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 307 (609)
+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4444444444433221 223334444444444444444444444444333
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.33 E-value=2.2e+02 Score=26.59 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHCCC
Q 037911 348 YNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGR--LLSALNLVVELQRFGV 411 (609)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~ 411 (609)
...++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+....++..+.+.++
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 345555666666666666666666421111 12233333334443322 2344555555555443
No 289
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=42.13 E-value=98 Score=22.55 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 037911 184 GLIRESFKTFRKTLDVGFQPSIVSCNFLL--NGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNG 261 (609)
Q Consensus 184 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 261 (609)
...++|..+-+-+...+ + .....+| ..+...|++++|..+.+.+. .||...|..|.. .+.|-.+++..
T Consensus 21 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 35566666666665533 2 2233333 34566777777777766553 477777665543 46677777777
Q ss_pred HHHHHHHcC
Q 037911 262 FLEKIEEEG 270 (609)
Q Consensus 262 ~~~~~~~~~ 270 (609)
.+..+...|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 776666555
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.80 E-value=2e+02 Score=26.09 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 313 YTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 313 ~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3566777777888888888777753
No 291
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.52 E-value=37 Score=29.09 Aligned_cols=19 Identities=26% Similarity=-0.005 Sum_probs=9.4
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 037911 211 LLNGLLKLNCIDQCWQVYE 229 (609)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~ 229 (609)
.+...+..|+.+-+..+++
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 3444555566554444443
No 292
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.82 E-value=23 Score=31.19 Aligned_cols=25 Identities=4% Similarity=-0.207 Sum_probs=12.8
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCC
Q 037911 215 LLKLNCIDQCWQVYEEMGRIGICPN 239 (609)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~~~ 239 (609)
.++.|+.+....+++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3445666665555555544443333
No 293
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=40.46 E-value=1.1e+02 Score=23.02 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 037911 466 VADALLLKDEMVD 478 (609)
Q Consensus 466 ~~~A~~~~~~~~~ 478 (609)
+++|+.-+++..+
T Consensus 4 ~~~al~~L~e~~~ 16 (119)
T 1wty_A 4 LARAVERLKAALE 16 (119)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh
Confidence 4445554444443
No 294
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=40.17 E-value=1.4e+02 Score=23.83 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=11.7
Q ss_pred CChHHHHHHHHHHhhCCCC
Q 037911 219 NCIDQCWQVYEEMGRIGIC 237 (609)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~ 237 (609)
.++....++|+.++..|+.
T Consensus 136 p~l~~i~~~Y~~Lk~~G~~ 154 (157)
T 1elk_A 136 PDLTGVVTIYEDLRRKGLE 154 (157)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred cchHHHHHHHHHHHHcCCC
Confidence 3455566677777666653
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.02 E-value=1.3e+02 Score=22.96 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 037911 279 NTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK--VREAHQLFHRMVHRGLS 342 (609)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~ 342 (609)
..++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+.+++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34455555566666666666665421111 12222333333333321 34455555555555433
No 296
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.12 E-value=1.3e+02 Score=25.50 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=28.6
Q ss_pred HhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 501 SGEAVSLMDEMLESGMLPDSQ-------ICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 501 ~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
.+.|+.+|+.+.+..-.++.. .-...+-.|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456777777776643111111 0123455677777777777777777643
No 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.03 E-value=84 Score=28.06 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=7.0
Q ss_pred HHHHhcCCHHHHHHHH
Q 037911 318 NGLCKEGKVREAHQLF 333 (609)
Q Consensus 318 ~~~~~~~~~~~a~~~~ 333 (609)
...+..|+.+-+.-++
T Consensus 166 ~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 166 HITIKNGHVDMMILLL 181 (285)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcChHHHHHHHH
Confidence 3344455544444333
No 298
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.93 E-value=1.6e+02 Score=23.73 Aligned_cols=50 Identities=6% Similarity=-0.029 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HhcCCCHhHHHHHHHHHHH
Q 037911 464 DSVADALLLKDEMVDRNIKP--SLSTYRALIC-C-----FCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 464 g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~~~~ 513 (609)
|++-+|.++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666665543334 3344555555 1 2345666666666666654
No 299
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=36.92 E-value=1.4e+02 Score=24.36 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=35.7
Q ss_pred HHhcCCCHhHHHHHHHHHHHCCCC----------------CC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 494 CFCGIGRSGEAVSLMDEMLESGML----------------PD-SQICRVLINGYCMEKDVNKAEALLGFFA 547 (609)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~----------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (609)
+|.+..++..|+..++.+++..+. -| ...++.+...|...|+.++|...+..--
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 445566677777766666643322 12 2346778888889999999998876543
No 300
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.54 E-value=1.7e+02 Score=23.64 Aligned_cols=50 Identities=10% Similarity=0.162 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC
Q 037911 259 VNGFLEKIEEEGFDPD-LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP 308 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 308 (609)
+.++|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3334444444433222 2233344444444444444444444444444333
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=36.07 E-value=3e+02 Score=26.68 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=55.0
Q ss_pred CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 037911 158 DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGIC 237 (609)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 237 (609)
+.|...+.|..-+. .+...|++++|-++--.... |+-.+..+.+.+-.+=...|+..--+.+|.-+.+.| .
T Consensus 356 ~LpGAd~L~~~~F~-------~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~ 426 (494)
T 1bpo_A 356 NLAGAEELFARKFN-------ALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-Q 426 (494)
T ss_dssp TCSSCHHHHHHHHH-------HHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-C
T ss_pred CCccHHHHHHHHHH-------HHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-c
Confidence 45555566655566 67889999999888776654 445566666655544444555556666666666554 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 238 PNTHTFNILTHVFCKNGDVDKVNGF 262 (609)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (609)
.+..----+++.-...|+.+-.++.
T Consensus 427 Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 427 LNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHhhHHhHHHHhccHHHHHHHH
Confidence 3333223344444444554443333
No 302
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=34.74 E-value=2.1e+02 Score=26.03 Aligned_cols=287 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 037911 279 NTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDI--VSYNTLIFAYC 356 (609)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~ 356 (609)
++.+...++.|+.+-+..+++.=..-+...+..-++.|..+..... .++.+.+.+.|..++. ......+....
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~-----~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR-----EDIVELLLRHGADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCC-----HHHHHHHHHcCCchhhhccCCCchhHHHH
Q ss_pred HcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH------------HHHHH
Q 037911 357 KEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYD------------YLIVA 424 (609)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~ll~~ 424 (609)
..+.......+.......... |..-++.+..+..... .++++.+.+.|..++..... +.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~-d~~g~t~l~~A~~~~~-----~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~ 174 (337)
T 4g8k_A 101 IAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGK-----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 174 (337)
T ss_dssp HHTCHHHHHHHHTTTCCTTCB-CTTCCBHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHH
T ss_pred hcccchhhHHhhhccchhhhh-ccCCCCHHHHHHHcCc-----HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHH
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhcCCCHh
Q 037911 425 LCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYR--ALICCFCGIGRSG 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~ 502 (609)
.+..|+.+-+..++++....--..+..-.+.+..+... +.......+.+.+.+.|..++..... +.+...+..|..+
T Consensus 175 A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~ 253 (337)
T 4g8k_A 175 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 253 (337)
T ss_dssp HHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhH
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 503 EAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 503 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
.+..+++.--..--..|..-.+.|..++.... .++.+.+.+.|-.+|..+ .+...++.|+.+ +.+.++
T Consensus 254 ~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll 321 (337)
T 4g8k_A 254 LVQRLLEQEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLL 321 (337)
T ss_dssp HHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHH
T ss_pred HHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHH
Q ss_pred HcCCCCC
Q 037911 583 RLGFAPN 589 (609)
Q Consensus 583 ~~g~~p~ 589 (609)
+.|=.||
T Consensus 322 ~~GA~~d 328 (337)
T 4g8k_A 322 SHGAKED 328 (337)
T ss_dssp HTTCCC-
T ss_pred HCcCCCC
No 303
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.23 E-value=1.7e+02 Score=31.89 Aligned_cols=126 Identities=10% Similarity=-0.004 Sum_probs=73.7
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHH
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (609)
...+.++.|.++..|... ++.+-..++++|...|++++|...|+++.. +......... +
T Consensus 821 ~~~~~~~~a~eL~~~~~~------t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~---gl~~~~~~~~-~----------- 879 (950)
T 4gq2_M 821 FLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSL---VLYSHTSQFA-V----------- 879 (950)
T ss_dssp HHTTCHHHHHHHGGGCCS------SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC---TTCSSCCSCG-G-----------
T ss_pred HHhcHHHHHHHHHhhcCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh---hcccCccccc-c-----------
Confidence 445688888888887753 455567899999999999999999987652 1111000000 0
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcC
Q 037911 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT----HTFNILTHVFCKNG 254 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g 254 (609)
.+....++... +. ......-|..++..+-+.+.++.+.++-+...+.--..|. ..|+.+.++.+..|
T Consensus 880 -----~~~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 -----LREFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -----GHHHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -----hhhhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00111111111 10 0122336777888888888888888877777653212222 35666666666544
No 304
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=33.45 E-value=4e+02 Score=27.09 Aligned_cols=351 Identities=10% Similarity=-0.002 Sum_probs=167.5
Q ss_pred HHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037911 152 LVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEM 231 (609)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 231 (609)
++...++.|.....-..-+. .+.+.+++...+..+.. .+.+...--....+....|+..+|....+++
T Consensus 61 Fl~~~~~~p~~~~Lr~~~l~-------~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l 128 (618)
T 1qsa_A 61 FVRANPTLPPARTLQSRFVN-------ELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (618)
T ss_dssp HHHHCTTCHHHHHHHHHHHH-------HHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCChhHHHHHHHHHH-------HHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 33443455555555445555 56677777766664442 1334444444566677778877777777776
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCC
Q 037911 232 GRIGICPNTHTFNILTHVFCKNGDVD--KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPD 309 (609)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 309 (609)
=..| ......+..++..+.+.|.+. ....-++.+...| +...-..++... . .+.....+.+..+... . ++
T Consensus 129 W~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~-p-~~ 200 (618)
T 1qsa_A 129 WLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN-P-NT 200 (618)
T ss_dssp HSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC-G-GG
T ss_pred HhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC-h-Hh
Confidence 5544 344556667777777666543 3344444444443 222222222211 0 1111111112222222 1 11
Q ss_pred HhhHH--------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHHcCChHHHHHHHHHH
Q 037911 310 LVTYT--------------TLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTL----IFAYCKEGKMQESKSLLYEM 371 (609)
Q Consensus 310 ~~~~~--------------~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~~ 371 (609)
..... ..+.-+.+ .+.+.|...+....+.+ ..+......+ .......+...++...+...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~ 278 (618)
T 1qsa_A 201 VLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (618)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Confidence 11110 01122222 36677777777765432 1222222222 22222333244566666655
Q ss_pred HHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 037911 372 MGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLE 451 (609)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 451 (609)
.... .+.....-.+....+.|+++.|...|..|..... .......-+.+++...|+..+|...|..+... .+
T Consensus 279 ~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~-- 350 (618)
T 1qsa_A 279 IMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG-- 350 (618)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--
T ss_pred cccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--
Confidence 4432 2333333444444566888888888877655321 13444445566777777777777777777532 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHH---HHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 452 IYNELMESLCKCDSVADALLLKDEMVDRNIKP---SLST---YRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRV 525 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 525 (609)
.|..+.. .+.|..-.. ....+.+ .... -...+..+...|....|...+..+.+. .+......
T Consensus 351 fYg~lAa--~~Lg~~~~~-------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~ 418 (618)
T 1qsa_A 351 FYPMVAA--QRIGEEYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQ 418 (618)
T ss_dssp HHHHHHH--HHTTCCCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHH
T ss_pred hHHHHHH--HHcCCCCCC-------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHH
Confidence 2322211 112211000 0000000 0001 112234566778888888888877653 23344445
Q ss_pred HHHHHHccCCHHHHHHHHH
Q 037911 526 LINGYCMEKDVNKAEALLG 544 (609)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~ 544 (609)
+.......|..+.++....
T Consensus 419 la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 419 LARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHH
Confidence 5555666777777665543
No 305
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.42 E-value=2.1e+02 Score=23.74 Aligned_cols=111 Identities=13% Similarity=-0.042 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLI 282 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 282 (609)
++...-...+..+.+.|.. .+...+.++.. .++...-...+.++.+.|+.+. ...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 4444444555555555542 23333333333 2455555555555555554322 222222222 23444545555
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC
Q 037911 283 SSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK 325 (609)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 325 (609)
.++.+.|+.+ +...+.++.+. ++...-...+.++.+.|+
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALKD---EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCcHH-HHHHHHHHHhC---CCHHHHHHHHHHHHHcCC
Confidence 5555555432 23333333321 244444444444444444
No 306
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.04 E-value=1.3e+02 Score=24.68 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=9.9
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC
Q 037911 251 CKNGDVDKVNGFLEKIEEEGFDP 273 (609)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~ 273 (609)
+..|+.+.-.++.+.+.+.|..+
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHcCCcchHHHHHHHHHHCCCCC
Confidence 33444443344444444444433
No 307
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.86 E-value=1.2e+02 Score=28.08 Aligned_cols=22 Identities=5% Similarity=0.200 Sum_probs=10.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 037911 245 ILTHVFCKNGDVDKVNGFLEKI 266 (609)
Q Consensus 245 ~l~~~~~~~g~~~~a~~~~~~~ 266 (609)
.++.-|...|+.++|...++++
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHc
Confidence 3444444455555555444444
No 308
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=32.76 E-value=2.6e+02 Score=24.74 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=31.8
Q ss_pred HHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 136 LAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 136 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
+.+.|.+++|++.+..-++. .|.+...-..++. .++-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~---~P~da~~R~~Lfq-------LLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIE-------LLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHH-------HHHhcCCHHHHHHHHHHHHHh
Confidence 44556666666666555543 4555665555665 566666666666666655553
No 309
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.85 E-value=3e+02 Score=25.12 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 502 GEAVSLMDEMLESGMLPDSQ--ICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 502 ~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
....++---+..-++.|... ++..-+..+.+.+++..|..+.+++.+.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel 236 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKI 236 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 33444444444444444433 3455566666777777777777777755
No 310
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.76 E-value=59 Score=21.58 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=32.2
Q ss_pred hhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhh
Q 037911 81 NDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKN 118 (609)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~ 118 (609)
..|+...|+++...|..+|..+.++.+.|++.+-.+..
T Consensus 23 ~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 23 DDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 44677789999999999999999999999988876654
No 311
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.34 E-value=3.7e+02 Score=25.99 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=30.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHCCC
Q 037911 322 KEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGK-----MQESKSLLYEMMGNGI 376 (609)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~ 376 (609)
+.++.+.|+.++.+|.+.|..|....-..++.+.-.-|. ...|...++....-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 446677777777777777666555444444444444443 2344445555555553
No 312
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.28 E-value=3.1e+02 Score=25.06 Aligned_cols=30 Identities=13% Similarity=0.074 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhCCc
Q 037911 277 TYNTLISSYCKKGRLNDAFYLYRIMYRRNV 306 (609)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 306 (609)
+....|....+.+++..|-.+-+++++.+.
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 345556666677777777777777776654
No 313
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=30.71 E-value=3.5e+02 Score=25.59 Aligned_cols=223 Identities=11% Similarity=-0.011 Sum_probs=122.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHH-
Q 037911 350 TLIFAYCKEGKMQESKSLLYEMMGNGIYPD-----TFTCQIIVQGYGKEGRLLSALNLVVELQRF--GVSISRDIYDYL- 421 (609)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l- 421 (609)
.++..|...|++.+|..++.++.+.=-..| ...+..-++.|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 578889999999999999998876311111 234566677889999999999999887543 222444333222
Q ss_pred ---HHHHH-hcCChHHHHHHHHHHH-hCCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 037911 422 ---IVALC-QDNRPFAATSLLERIG-QDGYV--P---SLEIYNELMESLCKCDSVADALLLKD-EMVDRNIKPSLSTYRA 490 (609)
Q Consensus 422 ---l~~~~-~~~~~~~a~~~~~~~~-~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~~~~~ 490 (609)
...+. ..+++..|...|-+.. ...-. | +...|..+.... .++..+.-.++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHHHHHH
Confidence 22445 6889999988765552 11111 1 122333222222 233333323222 2111112355666666
Q ss_pred HHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC
Q 037911 491 LICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGD 570 (609)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 570 (609)
++.+| ..+++.+...+++.... .+..|......+-..+. .--...+.++.+ +-...++..+...+.- .
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~-----~Ir~~~L~~i~~---pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYD-----TMLEQNLCRIIE---PYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHH-----HHHHHHHHHHHT---TCSEEEHHHHHHHHTC--C
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHH-----HHHHHHHHHHhH---hhceeeHHHHHHHHCc--C
Confidence 66665 56788777777776543 35556653221111110 001111222221 3344667777766543 6
Q ss_pred HHHHHHHHHHHHHcCC
Q 037911 571 LSKLMELQKRFLRLGF 586 (609)
Q Consensus 571 ~~~A~~~~~~m~~~g~ 586 (609)
.+++...+-+|+..|.
T Consensus 330 ~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 330 MPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCC
Confidence 7888888888887654
No 314
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.66 E-value=98 Score=26.24 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=9.7
Q ss_pred HHHHHHHcCChHHHHHHHH
Q 037911 246 LTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~ 264 (609)
.+...+..|+.+-+..+++
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 3444556666654444443
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.24 E-value=87 Score=25.22 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=10.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc
Q 037911 527 INGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
+..+...+..-.|.++++.+.+.
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHhh
Confidence 33334444444555555555444
No 316
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.16 E-value=1.1e+02 Score=27.23 Aligned_cols=52 Identities=17% Similarity=0.028 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 037911 315 TLMNGLCKEGKVREAHQLFHRMVHRGLSP-DIVSYNTLIFAYCKEGKMQESKSLLYE 370 (609)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (609)
+.+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|+.+-+.-+++.
T Consensus 131 t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 131 TSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp SHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 344445556665433 3333444322 110222334444566666655555443
No 317
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.09 E-value=72 Score=26.32 Aligned_cols=15 Identities=0% Similarity=-0.101 Sum_probs=7.8
Q ss_pred HHHhCCHHHHHHHHH
Q 037911 180 YVKVGLIRESFKTFR 194 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~ 194 (609)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345566655555443
No 318
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.70 E-value=1.5e+02 Score=27.47 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 313 YTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 313 ~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3456666677777777777666664
No 319
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=29.23 E-value=61 Score=20.85 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCCCChhcHHHHHHHH-Hhc
Q 037911 537 NKAEALLGFFAKKFQIYDTESYNAVFNMF-AED 568 (609)
Q Consensus 537 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 568 (609)
++|.+.|.+|++....+..-+|...+..+ ++.
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 56777777777766666667787777776 443
No 320
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.13 E-value=1.2e+02 Score=24.91 Aligned_cols=15 Identities=0% Similarity=-0.035 Sum_probs=8.7
Q ss_pred HHhcCChHHHHHHHH
Q 037911 215 LLKLNCIDQCWQVYE 229 (609)
Q Consensus 215 ~~~~~~~~~a~~~~~ 229 (609)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 344566666666554
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.01 E-value=1.5e+02 Score=23.27 Aligned_cols=17 Identities=18% Similarity=0.213 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHHcC
Q 037911 534 KDVNKAEALLGFFAKKF 550 (609)
Q Consensus 534 g~~~~A~~~~~~~~~~~ 550 (609)
+..-.|.++++.+.+.+
T Consensus 35 ~~~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKF 51 (145)
T ss_dssp SSCCCHHHHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 33444555555554443
No 322
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.58 E-value=1.2e+02 Score=26.03 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 037911 223 QCWQVYEEMGRIGICPN-THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDP 273 (609)
Q Consensus 223 ~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 273 (609)
.+.++|..|...||-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44455555544444322 2334444444555555555555555555544333
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.49 E-value=2.1e+02 Score=22.31 Aligned_cols=58 Identities=14% Similarity=0.057 Sum_probs=26.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 037911 196 TLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 196 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 254 (609)
+.+.|++.+.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34455444442 22344444444445556666666655443344444443444444433
No 324
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.23 E-value=3.4e+02 Score=24.61 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 243 FNILTHVFCKNGDVDKVNGFLEKIE 267 (609)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~~~ 267 (609)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3556777777888888888877754
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.07 E-value=1.8e+02 Score=22.86 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=22.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037911 386 IVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDN 429 (609)
Q Consensus 386 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 429 (609)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444445555566666655554555555555555555444
No 326
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=26.99 E-value=2.7e+02 Score=24.07 Aligned_cols=43 Identities=16% Similarity=0.415 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 037911 257 DKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIM 301 (609)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 301 (609)
+.+..+|+.+-..| ....++.-++..+.+...+-+++..|+.+
T Consensus 213 ~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 213 EHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 34444554443221 12345666666666666666666666554
No 327
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.98 E-value=1.8e+02 Score=23.82 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=51.9
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHH-
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIV--SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHT---FNILTHVFCK- 252 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~l~~~~~~- 252 (609)
..++.|+++....+++. +. .... .-.+.+...+..|..+.-.++.+.+.+.|..++... .+.|..++..
T Consensus 12 ~Aa~~g~~~~~~~l~~~----~~-~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~ 86 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEK----GY-EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86 (186)
T ss_dssp HHHHHSCHHHHHHHHHH----SS-SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHhc----Cc-ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 45688898886666653 21 1121 122455566667777766778888888887665422 2223322222
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH
Q 037911 253 NGDVDKVNGFLEKIEEEGFDPDL 275 (609)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~~~ 275 (609)
..+.....++.+.+.+.|..++.
T Consensus 87 ~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSSS
T ss_pred CcchhhHHHHHHHHHHCCCCCCc
Confidence 22344456667777777766553
No 328
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.77 E-value=2.1e+02 Score=22.02 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=26.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 037911 196 TLDVGFQPSIVSCNFLLNGLLKLN-CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 196 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 254 (609)
+.+.|++.+.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33445444432 223444444444 44556666666655543444444433344444433
No 329
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.52 E-value=2.8e+02 Score=23.16 Aligned_cols=18 Identities=6% Similarity=0.073 Sum_probs=10.3
Q ss_pred cCCHhHHHHHHHHHhhCC
Q 037911 288 KGRLNDAFYLYRIMYRRN 305 (609)
Q Consensus 288 ~g~~~~a~~~~~~~~~~~ 305 (609)
..+.+.|+-.+-+|++.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 345555666666666555
No 330
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.79 E-value=1.9e+02 Score=22.63 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=26.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 037911 196 TLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 196 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 254 (609)
+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 33445444443 223334444444 4456666666655544444444433444444443
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.32 E-value=1.5e+02 Score=22.82 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHHHcC
Q 037911 535 DVNKAEALLGFFAKKF 550 (609)
Q Consensus 535 ~~~~A~~~~~~~~~~~ 550 (609)
..-.|.++++.+.+.+
T Consensus 33 ~~~sa~ei~~~l~~~~ 48 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAG 48 (136)
T ss_dssp CSBCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhhC
Confidence 3444555555555443
No 332
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=25.28 E-value=3.9e+02 Score=24.33 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 037911 277 TYNTLISSYCKKGRLNDAFYLYRIMYRRN 305 (609)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 305 (609)
+...-|....+.+++..|-.+-+++++.+
T Consensus 200 aLr~AM~~a~K~KNy~tAa~fArrLLel~ 228 (320)
T 3mkr_B 200 VLRTALNLFFKLKNFRTAAAFARRLLELG 228 (320)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34555566667777777777777777654
No 333
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=25.06 E-value=2.9e+02 Score=22.77 Aligned_cols=142 Identities=16% Similarity=0.066 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHH
Q 037911 238 PNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLM 317 (609)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 317 (609)
++...-...+..+.+.|..+ +...+..+.. .++...-...+.++.+.++. .+...+.++... ++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHHHHH
Confidence 45555555566666666533 3333333332 23555555555566665553 233333333322 3444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCC
Q 037911 318 NGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGR 395 (609)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (609)
.++.+.++.+ +...+..+.+ .++..+-...+.++.+.|+.+ +...+..+.+ .++...-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 5566555533 2333333332 345444445555555555432 3333333332 2344444444444444443
No 334
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=25.03 E-value=75 Score=19.51 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=27.5
Q ss_pred hhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHh
Q 037911 82 DLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWV 116 (609)
Q Consensus 82 ~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~ 116 (609)
.|....|+.+...+..+|..+.||.+.|...+-..
T Consensus 10 ~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 10 ILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34556788888899999999999999998876443
No 335
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=24.95 E-value=3.2e+02 Score=23.24 Aligned_cols=49 Identities=6% Similarity=0.168 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037911 432 FAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNI 481 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 481 (609)
+....++..+...|+..|...-...+....+.+.+ ....+-.++..+|+
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI 141 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGI 141 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCC
Confidence 33445555555566554544444444444331111 23444555556665
No 336
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.66 E-value=2.1e+02 Score=22.57 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=21.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccc
Q 037911 561 VFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGM 604 (609)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 604 (609)
++..+...+..-.|.++++.+.+.+...+..|..-.|+.|.+.|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444455555555555544445555555555444443
No 337
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.53 E-value=1.7e+02 Score=19.87 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037911 398 SALNLVVELQRFGVSISRDIYDYLIVALCQDN 429 (609)
Q Consensus 398 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 429 (609)
.+.++++.+.+.+...+..|....+..+.+.|
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444444443444444444444444433
No 338
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.46 E-value=5.9e+02 Score=26.12 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=14.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHh
Q 037911 211 LLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
++-.|.|.|.+++|.++.++..
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTG
T ss_pred HHHHHHhcCCHHHHHHHHHHhh
Confidence 5556667777777777666553
No 339
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.41 E-value=2.6e+02 Score=22.08 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=11.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 037911 350 TLIFAYCKEGKMQESKSLLYEM 371 (609)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~ 371 (609)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 340
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.39 E-value=2.8e+02 Score=22.29 Aligned_cols=52 Identities=8% Similarity=0.011 Sum_probs=27.7
Q ss_pred HcCChHHHHHHHHHHHHcCCCC--CHHhHHHHHH-H-----HHhcCCHhHHHHHHHHHhh
Q 037911 252 KNGDVDKVNGFLEKIEEEGFDP--DLVTYNTLIS-S-----YCKKGRLNDAFYLYRIMYR 303 (609)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~~ 303 (609)
..|++-+|.++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466666666666666553333 3344555554 1 2235666666666655543
No 341
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.19 E-value=4.7e+02 Score=28.32 Aligned_cols=108 Identities=12% Similarity=0.045 Sum_probs=68.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCcc------------------
Q 037911 246 LTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVL------------------ 307 (609)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------------------ 307 (609)
++..+...|..+-|.++..- ++.+...--.+..+|...|++++|.+.|++.-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 55566667777665543322 223444434566777888888888888876531 110
Q ss_pred --C---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcC
Q 037911 308 --P---DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDI----VSYNTLIFAYCKEG 359 (609)
Q Consensus 308 --p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g 359 (609)
+ ...-|..++..+-+.+-++-+.++-+...+.--.-|. ..|..+..+.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0 1125788999999999999999988888865222222 35777777777655
No 342
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.00 E-value=1.3e+02 Score=23.58 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHc
Q 037911 536 VNKAEALLGFFAKK 549 (609)
Q Consensus 536 ~~~A~~~~~~~~~~ 549 (609)
.-.|.++++.+.+.
T Consensus 33 h~ta~ei~~~l~~~ 46 (145)
T 3eyy_A 33 HATPDDILGEVRKT 46 (145)
T ss_dssp SBCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhh
Confidence 33455555555444
No 343
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.22 E-value=1.5e+02 Score=23.73 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=26.6
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcC
Q 037911 198 DVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI--GICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 198 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g 254 (609)
+.|++.+. .-..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|
T Consensus 26 ~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 26 QGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 34544443 2334445555555555566666666544 33344444333444444444
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.14 E-value=2.4e+02 Score=22.18 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=26.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 037911 196 TLDVGFQPSIVSCNFLLNGLLKLN-CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 196 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 254 (609)
+.+.|++.+..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344454444332 23334443333 44456666666655443344444444444444443
No 345
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=22.01 E-value=7.6e+02 Score=26.54 Aligned_cols=147 Identities=10% Similarity=0.068 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 037911 186 IRESFKTFRKTLDVG----FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNG 261 (609)
Q Consensus 186 ~~~A~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 261 (609)
.++|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++..... .+..--..++.+++-..+.+...+
T Consensus 705 ~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~aL~~~~d~~~l~~ 779 (909)
T 4fke_A 705 ENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRSALACSNEVWLLNR 779 (909)
T ss_dssp HHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHHHhCCCCCHHHHHH
Confidence 456777777766532 344433 23333344556666655666666553 344445567777777777777777
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHhHHHHHHHHHhh---CCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 262 FLEKIEEEGFDPDLVTYNTLISSYCKKG-RLNDAFYLYRIMYR---RNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
+++.............. .++.+...+. ..+.|.+.+.+=-+ .........+..++......-.-++-.+-++...
T Consensus 780 ~L~~~l~~~~ir~qd~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 780 YLGYTLNPDLIRKQDAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFK 858 (909)
T ss_dssp HHHHTTCTTTSCGGGHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCchhhHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77766543211112222 2233333222 23444444433211 1122234456677776665544444444444444
Q ss_pred H
Q 037911 338 H 338 (609)
Q Consensus 338 ~ 338 (609)
+
T Consensus 859 ~ 859 (909)
T 4fke_A 859 K 859 (909)
T ss_dssp T
T ss_pred h
Confidence 3
No 346
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.72 E-value=1.6e+02 Score=23.16 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037911 535 DVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDG 569 (609)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 569 (609)
..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554433333333333333333333
No 347
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.66 E-value=3.1e+02 Score=22.92 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=9.3
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 037911 212 LNGLLKLNCIDQCWQVYEE 230 (609)
Q Consensus 212 l~~~~~~~~~~~a~~~~~~ 230 (609)
+...+..|+.+-+..+++.
T Consensus 41 L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 41 LHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3334445665555555443
No 348
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.14 E-value=78 Score=26.99 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=10.2
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 037911 390 YGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 390 ~~~~~~~~~A~~~~~~~~~ 408 (609)
....|+...++++.+.+.+
T Consensus 217 A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3445555566665555543
No 349
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.08 E-value=2.8e+02 Score=21.13 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=11.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 037911 350 TLIFAYCKEGKMQESKSLLYEM 371 (609)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~ 371 (609)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 350
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.95 E-value=5.7e+02 Score=24.63 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=38.7
Q ss_pred HcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHCCCC
Q 037911 357 KEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGR-----LLSALNLVVELQRFGVS 412 (609)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~ 412 (609)
+.++.+.|+.++.+|++.|..|....-..+..+.-.-|. ..-|...++.....|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 457889999999999998877766665655656555443 44566666666666644
No 351
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.92 E-value=5.8e+02 Score=24.76 Aligned_cols=119 Identities=15% Similarity=0.056 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhcc
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCT 173 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (609)
.++--+.....+++.|+++-.. .|++.....|..-.+.+...|+|++|.++--... .+...+.++...+-.
T Consensus 333 ~ivpyi~~~l~n~~lA~~lA~R----~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP---~giLRt~~Ti~rFk~-- 403 (494)
T 1bpo_A 333 NIIPYITNVLQNPDLALRMAVR----NNLAGAEELFARKFNALFAQGNYSEAAKVAANAP---KGILRTPDTIRRFQS-- 403 (494)
T ss_dssp THHHHHHHTTCCHHHHHHHHHH----TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG---GGSSCSHHHHHHHTT--
T ss_pred cchhhhhhccCCHHHHHHHHHh----cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc---cccccCHHHHHHHhc--
Confidence 3444444445788888776543 4567677778888999999999999988754433 233344555544433
Q ss_pred ccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037911 174 EDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQV 227 (609)
Q Consensus 174 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 227 (609)
.-...|+..--+.+|..+.+.| ..+..----+.+.....|+.+-....
T Consensus 404 -----vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 404 -----VPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp -----SCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----CCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHH
Confidence 2234455555566666666655 34443333344444444544444333
No 352
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.47 E-value=5.2e+02 Score=24.05 Aligned_cols=216 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhCC-ccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037911 279 NTLISSYCKKGRLNDAFYLYRIMYRRN-VLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCK 357 (609)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 357 (609)
..++.-|...|+.++|...++++...+ ..|...........=.+....+.+-.++..+...|+.+.......+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cCChH----HHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------
Q 037911 358 EGKMQ----ESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQ------ 427 (609)
Q Consensus 358 ~g~~~----~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~------ 427 (609)
..+.. .|..++.++...-+.-+..+...+...+...+...-...++..+.+ ..+......+..--.-
T Consensus 96 l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k---~~G~~~l~~l~~~sgl~l~~Fl 172 (364)
T 3l6a_A 96 CPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAK---LQDREWLTELFQQSKVNMQKML 172 (364)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHH---HSCHHHHHHHHHHHTCCSGGGS
T ss_pred ChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHH---hcCHHHHHHHHHHcCCCHHHhC
Q ss_pred ---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 037911 428 ---DNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG 497 (609)
Q Consensus 428 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 497 (609)
....+...+.++.-.-..+.|-...-..|..........++..+..+.-......++......++.+.++
T Consensus 173 Pe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v~~ 245 (364)
T 3l6a_A 173 PEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQ 245 (364)
T ss_dssp CGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHHHH
No 353
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.17 E-value=4.3e+02 Score=22.97 Aligned_cols=235 Identities=11% Similarity=0.001 Sum_probs=0.0
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCccCHHHH
Q 037911 308 PDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGK----MQESKSLLYEMMGNGIYPDTFTC 383 (609)
Q Consensus 308 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~ 383 (609)
++...-...+.++.+.+..+....+...+... +...-...+.++.+.|. ......++..+... .++...-
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~----~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr 108 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSDK----NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVR 108 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCS----SHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHH
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHH
Q ss_pred HHHHHHHHccCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037911 384 QIIVQGYGKEGR-----LLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELME 458 (609)
Q Consensus 384 ~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (609)
...+.++.+.+. ...+...+..+.. .++..+-...+.++...++ .++...+..+.. .++...-...+.
T Consensus 109 ~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~ 181 (280)
T 1oyz_A 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHHHHHHH
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 037911 459 SLCKCD-SVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVN 537 (609)
Q Consensus 459 ~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 537 (609)
++.+.+ ....+...+..+.+. ++...-...+.++...|+......+.+.+.+ ++ .-...+.++.+.|+ .
T Consensus 182 aL~~~~~~~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~-~ 251 (280)
T 1oyz_A 182 AININKYDNSDIRDCFVEMLQD---KNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGD-K 251 (280)
T ss_dssp HHHHHTCCCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCC-G
T ss_pred HHHhhccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCc-h
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 037911 538 KAEALLGFFAKKFQIYDTESYNAVFNMFAE 567 (609)
Q Consensus 538 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 567 (609)
.+...+..+.+. .++.......+..+.+
T Consensus 252 ~~~~~L~~~l~~--~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 252 TLLPVLDTMLYK--FDDNEIITSAIDKLKR 279 (280)
T ss_dssp GGHHHHHHHHTT--SSCCHHHHHHHHHHTC
T ss_pred hhhHHHHHHHhc--CCCcHHHHHHHHHhhc
Done!