Query 037913
Match_columns 141
No_of_seqs 133 out of 1096
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 05:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 2.8E-31 6E-36 160.5 15.9 138 2-140 16-154 (160)
2 KOG0027 Calmodulin and related 100.0 8.9E-29 1.9E-33 151.8 15.9 139 3-141 5-148 (151)
3 PTZ00183 centrin; Provisional 99.9 3.6E-25 7.7E-30 136.9 16.9 139 3-141 14-153 (158)
4 KOG0028 Ca2+-binding protein ( 99.9 4.5E-25 9.8E-30 131.2 14.3 139 3-141 30-169 (172)
5 PTZ00184 calmodulin; Provision 99.9 1.6E-24 3.5E-29 132.6 16.8 138 3-140 8-146 (149)
6 KOG0031 Myosin regulatory ligh 99.9 1.8E-22 3.8E-27 119.5 15.2 136 2-141 28-164 (171)
7 KOG0037 Ca2+-binding protein, 99.9 8.2E-22 1.8E-26 123.1 15.1 129 6-140 57-186 (221)
8 KOG0030 Myosin essential light 99.9 1.5E-21 3.3E-26 113.7 12.8 137 3-140 8-149 (152)
9 KOG0034 Ca2+/calmodulin-depend 99.9 1.1E-20 2.4E-25 118.1 14.9 134 3-140 30-173 (187)
10 KOG0036 Predicted mitochondria 99.9 7.4E-20 1.6E-24 123.7 15.0 134 2-140 10-144 (463)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.9 7.8E-20 1.7E-24 114.4 14.0 135 6-140 26-173 (193)
12 PLN02964 phosphatidylserine de 99.7 6.2E-15 1.3E-19 107.0 13.8 101 2-106 139-243 (644)
13 KOG0037 Ca2+-binding protein, 99.6 5.8E-15 1.3E-19 92.7 10.2 93 3-101 121-215 (221)
14 KOG4223 Reticulocalbin, calume 99.6 4.3E-15 9.4E-20 98.2 9.8 137 2-138 159-301 (325)
15 cd05022 S-100A13 S-100A13: S-1 99.6 3.1E-14 6.8E-19 79.2 7.3 65 76-140 6-73 (89)
16 PF13499 EF-hand_7: EF-hand do 99.5 2.8E-14 6.2E-19 75.6 6.5 62 79-140 1-66 (66)
17 cd05022 S-100A13 S-100A13: S-1 99.5 1.1E-13 2.3E-18 77.1 7.6 70 1-70 3-75 (89)
18 KOG0377 Protein serine/threoni 99.5 6.5E-13 1.4E-17 91.4 12.3 135 5-141 463-614 (631)
19 KOG0027 Calmodulin and related 99.5 4.6E-13 1E-17 82.2 10.4 101 41-141 7-112 (151)
20 cd05027 S-100B S-100B: S-100B 99.5 3.2E-13 6.9E-18 75.2 8.1 65 76-140 6-77 (88)
21 cd05027 S-100B S-100B: S-100B 99.5 5.3E-13 1.1E-17 74.4 8.6 70 1-70 3-79 (88)
22 PTZ00183 centrin; Provisional 99.5 2.2E-12 4.9E-17 79.6 12.0 101 6-106 53-154 (158)
23 KOG4223 Reticulocalbin, calume 99.5 6.5E-13 1.4E-17 88.0 9.6 136 3-138 74-224 (325)
24 PF13499 EF-hand_7: EF-hand do 99.5 3.7E-13 8E-18 71.3 7.0 62 7-68 1-66 (66)
25 KOG0044 Ca2+ sensor (EF-Hand s 99.4 2E-12 4.2E-17 81.4 10.1 102 5-106 63-175 (193)
26 COG5126 FRQ1 Ca2+-binding prot 99.4 8.4E-12 1.8E-16 76.1 11.2 101 5-106 55-156 (160)
27 PTZ00184 calmodulin; Provision 99.4 8.4E-12 1.8E-16 76.2 11.3 100 6-105 47-147 (149)
28 cd05031 S-100A10_like S-100A10 99.4 2.9E-12 6.4E-17 72.5 7.7 65 76-140 6-77 (94)
29 cd05029 S-100A6 S-100A6: S-100 99.4 5E-12 1.1E-16 70.5 8.1 69 2-70 6-79 (88)
30 cd05025 S-100A1 S-100A1: S-100 99.4 5E-12 1.1E-16 71.3 8.1 65 76-140 7-78 (92)
31 KOG2562 Protein phosphatase 2 99.4 8.5E-12 1.9E-16 86.3 10.4 126 10-138 282-420 (493)
32 cd05029 S-100A6 S-100A6: S-100 99.4 7.2E-12 1.6E-16 69.8 8.1 64 77-140 9-77 (88)
33 cd05026 S-100Z S-100Z: S-100Z 99.4 7.7E-12 1.7E-16 70.6 8.4 69 2-70 6-81 (93)
34 cd05025 S-100A1 S-100A1: S-100 99.4 1.1E-11 2.4E-16 69.9 8.4 69 2-70 5-80 (92)
35 KOG0038 Ca2+-binding kinase in 99.4 6.5E-12 1.4E-16 74.4 7.5 134 3-140 25-175 (189)
36 cd05031 S-100A10_like S-100A10 99.4 1E-11 2.2E-16 70.3 8.1 69 2-70 4-79 (94)
37 cd05026 S-100Z S-100Z: S-100Z 99.3 1.2E-11 2.6E-16 69.8 8.2 64 77-140 9-79 (93)
38 cd00213 S-100 S-100: S-100 dom 99.3 1.2E-11 2.5E-16 69.2 7.6 65 76-140 6-77 (88)
39 PF13833 EF-hand_8: EF-hand do 99.3 5.2E-12 1.1E-16 64.2 5.6 50 91-140 1-51 (54)
40 cd00052 EH Eps15 homology doma 99.3 8.9E-12 1.9E-16 66.1 6.6 58 81-140 2-59 (67)
41 smart00027 EH Eps15 homology d 99.3 2.1E-11 4.5E-16 69.3 7.8 64 75-140 7-70 (96)
42 cd00051 EFh EF-hand, calcium b 99.3 2.7E-11 5.9E-16 62.8 7.7 62 80-141 2-63 (63)
43 cd00213 S-100 S-100: S-100 dom 99.3 2.5E-11 5.4E-16 67.9 7.9 69 2-70 4-79 (88)
44 smart00027 EH Eps15 homology d 99.3 3.9E-11 8.4E-16 68.2 8.6 66 3-70 7-72 (96)
45 KOG0034 Ca2+/calmodulin-depend 99.3 1.4E-10 3E-15 73.0 11.1 100 8-107 68-176 (187)
46 PLN02964 phosphatidylserine de 99.3 1.2E-10 2.5E-15 85.2 11.5 119 22-141 120-242 (644)
47 cd00052 EH Eps15 homology doma 99.3 5.9E-11 1.3E-15 62.9 7.2 60 9-70 2-61 (67)
48 cd00252 SPARC_EC SPARC_EC; ext 99.2 6.3E-11 1.4E-15 69.1 7.5 63 74-140 44-106 (116)
49 cd05023 S-100A11 S-100A11: S-1 99.2 1.1E-10 2.5E-15 65.1 8.1 65 76-140 7-78 (89)
50 cd05023 S-100A11 S-100A11: S-1 99.2 1.5E-10 3.3E-15 64.6 8.5 70 1-70 4-80 (89)
51 PF14658 EF-hand_9: EF-hand do 99.2 5.8E-11 1.3E-15 61.5 5.4 60 82-141 2-63 (66)
52 cd00051 EFh EF-hand, calcium b 99.2 1.9E-10 4.1E-15 59.6 7.3 61 8-68 2-62 (63)
53 PF13833 EF-hand_8: EF-hand do 99.2 1.4E-10 3.1E-15 58.8 6.0 51 19-69 1-52 (54)
54 KOG0028 Ca2+-binding protein ( 99.2 1.6E-09 3.5E-14 65.3 10.7 102 5-106 68-170 (172)
55 KOG0040 Ca2+-binding actin-bun 99.2 1.4E-09 3E-14 84.4 12.8 131 2-140 2249-2396(2399)
56 KOG4251 Calcium binding protei 99.1 7.4E-10 1.6E-14 71.4 8.5 138 3-140 98-307 (362)
57 cd05030 calgranulins Calgranul 99.1 6.5E-10 1.4E-14 62.1 7.3 70 1-70 3-79 (88)
58 PF14658 EF-hand_9: EF-hand do 99.1 7.5E-10 1.6E-14 57.4 6.5 61 10-70 2-64 (66)
59 cd05030 calgranulins Calgranul 99.1 8.3E-10 1.8E-14 61.6 7.2 65 76-140 6-77 (88)
60 KOG2643 Ca2+ binding protein, 99.1 1.3E-09 2.8E-14 75.3 9.3 129 8-141 320-452 (489)
61 cd00252 SPARC_EC SPARC_EC; ext 99.0 4.4E-09 9.5E-14 61.4 8.2 61 40-104 46-106 (116)
62 KOG2643 Ca2+ binding protein, 99.0 2E-08 4.4E-13 69.5 11.2 128 8-140 235-382 (489)
63 cd05024 S-100A10 S-100A10: A s 98.9 3E-08 6.4E-13 55.1 8.7 69 1-70 3-76 (91)
64 KOG0041 Predicted Ca2+-binding 98.9 1.1E-08 2.3E-13 64.1 7.3 65 76-140 97-161 (244)
65 KOG0036 Predicted mitochondria 98.9 6.6E-08 1.4E-12 66.7 11.5 97 6-107 51-147 (463)
66 KOG0041 Predicted Ca2+-binding 98.9 3.7E-08 8.1E-13 61.7 9.5 102 2-103 95-200 (244)
67 KOG0751 Mitochondrial aspartat 98.8 1.8E-08 3.9E-13 70.9 7.7 127 9-139 111-241 (694)
68 KOG0031 Myosin regulatory ligh 98.8 2.7E-08 5.8E-13 59.8 7.3 60 76-139 30-89 (171)
69 KOG0030 Myosin essential light 98.8 2.6E-08 5.6E-13 58.8 6.3 67 74-140 7-75 (152)
70 cd05024 S-100A10 S-100A10: A s 98.8 1.4E-07 3.1E-12 52.3 8.4 63 77-140 7-74 (91)
71 PF00036 EF-hand_1: EF hand; 98.8 1.3E-08 2.8E-13 44.6 3.1 27 80-106 2-28 (29)
72 PF00036 EF-hand_1: EF hand; 98.8 1.5E-08 3.3E-13 44.4 3.4 29 7-35 1-29 (29)
73 KOG0169 Phosphoinositide-speci 98.7 9.1E-07 2E-11 65.3 12.8 133 4-140 134-272 (746)
74 PF13405 EF-hand_6: EF-hand do 98.6 4.9E-08 1.1E-12 43.6 3.3 30 79-108 1-31 (31)
75 PF13405 EF-hand_6: EF-hand do 98.6 7.5E-08 1.6E-12 43.0 3.4 30 7-36 1-31 (31)
76 KOG0377 Protein serine/threoni 98.5 5.2E-07 1.1E-11 63.0 7.7 65 6-70 547-615 (631)
77 KOG0751 Mitochondrial aspartat 98.5 5.3E-06 1.1E-10 58.9 11.6 100 6-107 33-137 (694)
78 PF12763 EF-hand_4: Cytoskelet 98.4 1.9E-06 4.1E-11 49.4 7.1 65 3-70 7-71 (104)
79 PRK12309 transaldolase/EF-hand 98.4 1.5E-06 3.2E-11 61.0 7.7 53 76-141 332-384 (391)
80 PF14788 EF-hand_10: EF hand; 98.4 1.5E-06 3.2E-11 42.7 5.3 49 22-70 1-49 (51)
81 KOG0038 Ca2+-binding kinase in 98.4 4.7E-06 1E-10 49.9 8.0 99 9-107 74-178 (189)
82 PF13202 EF-hand_5: EF hand; P 98.4 5.8E-07 1.3E-11 37.9 2.7 23 81-103 2-24 (25)
83 PF14788 EF-hand_10: EF hand; 98.3 1.3E-06 2.9E-11 42.9 4.2 46 95-140 2-47 (51)
84 PF12763 EF-hand_4: Cytoskelet 98.3 3.5E-06 7.6E-11 48.3 6.5 65 73-140 5-69 (104)
85 PRK12309 transaldolase/EF-hand 98.3 7.1E-06 1.5E-10 57.6 8.6 58 36-106 328-385 (391)
86 PF10591 SPARC_Ca_bdg: Secrete 98.3 8.6E-07 1.9E-11 51.7 3.5 66 71-138 47-112 (113)
87 PF13202 EF-hand_5: EF hand; P 98.3 1.2E-06 2.7E-11 36.9 2.9 24 8-31 1-24 (25)
88 KOG0040 Ca2+-binding actin-bun 98.2 4.1E-06 8.9E-11 66.1 6.9 65 76-140 2251-2322(2399)
89 KOG4666 Predicted phosphate ac 98.2 2.9E-06 6.2E-11 57.2 4.4 98 42-140 259-357 (412)
90 PF05042 Caleosin: Caleosin re 98.1 9E-05 2E-09 45.9 9.5 133 6-138 7-162 (174)
91 KOG2562 Protein phosphatase 2 97.9 0.00016 3.5E-09 51.1 9.4 129 7-138 226-375 (493)
92 KOG1029 Endocytic adaptor prot 97.9 0.00043 9.4E-09 52.0 11.8 132 4-140 14-255 (1118)
93 KOG0046 Ca2+-binding actin-bun 97.9 9.5E-05 2.1E-09 53.0 7.6 67 3-70 16-85 (627)
94 KOG4251 Calcium binding protei 97.9 1.2E-05 2.5E-10 52.4 2.8 64 75-138 98-164 (362)
95 KOG1707 Predicted Ras related/ 97.9 0.00017 3.7E-09 52.5 8.6 133 3-139 192-374 (625)
96 KOG0046 Ca2+-binding actin-bun 97.8 0.0001 2.2E-09 52.9 7.1 65 75-140 16-83 (627)
97 KOG4666 Predicted phosphate ac 97.8 0.00011 2.5E-09 49.8 6.1 102 6-108 259-361 (412)
98 PF09279 EF-hand_like: Phospho 97.7 9.5E-05 2.1E-09 40.7 4.7 61 79-140 1-67 (83)
99 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.5E-05 3.3E-10 46.5 1.5 65 36-102 48-112 (113)
100 KOG4065 Uncharacterized conser 97.7 0.0002 4.4E-09 41.3 5.2 59 82-140 71-143 (144)
101 smart00054 EFh EF-hand, calciu 97.5 0.00015 3.3E-09 30.6 2.9 27 8-34 2-28 (29)
102 smart00054 EFh EF-hand, calciu 97.5 0.00018 4E-09 30.4 2.9 26 80-105 2-27 (29)
103 PF09279 EF-hand_like: Phospho 97.4 0.00071 1.5E-08 37.2 5.2 63 8-71 2-70 (83)
104 PF09069 EF-hand_3: EF-hand; 96.8 0.016 3.5E-07 32.3 6.9 62 77-141 2-74 (90)
105 KOG0035 Ca2+-binding actin-bun 96.8 0.016 3.5E-07 44.8 8.9 99 3-102 744-848 (890)
106 KOG3555 Ca2+-binding proteogly 96.8 0.0051 1.1E-07 42.3 5.4 100 5-108 210-312 (434)
107 KOG4065 Uncharacterized conser 96.6 0.019 4.1E-07 33.3 6.2 58 9-66 70-141 (144)
108 KOG1955 Ral-GTPase effector RA 96.6 0.0078 1.7E-07 43.5 5.7 63 76-140 229-291 (737)
109 KOG0169 Phosphoinositide-speci 96.6 0.044 9.6E-07 41.6 9.5 97 40-140 134-230 (746)
110 PLN02952 phosphoinositide phos 96.4 0.064 1.4E-06 40.2 9.5 84 56-140 14-108 (599)
111 PF05517 p25-alpha: p25-alpha 95.9 0.056 1.2E-06 33.4 6.4 52 89-140 13-67 (154)
112 KOG0042 Glycerol-3-phosphate d 95.9 0.029 6.2E-07 41.4 5.6 68 3-70 590-657 (680)
113 PF05517 p25-alpha: p25-alpha 95.8 0.094 2E-06 32.4 7.1 62 9-70 2-69 (154)
114 KOG4578 Uncharacterized conser 95.8 0.0035 7.7E-08 42.8 0.8 64 77-140 332-396 (421)
115 KOG1029 Endocytic adaptor prot 95.7 0.026 5.6E-07 43.1 4.8 63 5-69 194-256 (1118)
116 KOG0042 Glycerol-3-phosphate d 95.6 0.031 6.7E-07 41.2 4.8 66 76-141 591-656 (680)
117 KOG4347 GTPase-activating prot 95.5 0.023 4.9E-07 42.3 4.1 60 40-100 553-612 (671)
118 KOG3555 Ca2+-binding proteogly 95.5 0.029 6.2E-07 38.8 4.2 63 74-140 246-308 (434)
119 KOG1955 Ral-GTPase effector RA 95.5 0.074 1.6E-06 38.7 6.2 66 3-70 228-293 (737)
120 PF08726 EFhand_Ca_insen: Ca2+ 95.3 0.007 1.5E-07 32.0 0.6 56 77-140 5-67 (69)
121 KOG3866 DNA-binding protein of 95.1 0.024 5.3E-07 38.6 2.9 60 80-139 246-321 (442)
122 KOG2243 Ca2+ release channel ( 95.0 0.051 1.1E-06 44.5 4.8 55 84-139 4063-4117(5019)
123 KOG1265 Phospholipase C [Lipid 95.0 1.3 2.8E-05 35.0 11.8 119 16-140 158-297 (1189)
124 cd07313 terB_like_2 tellurium 94.6 0.43 9.4E-06 27.1 7.6 81 19-101 12-95 (104)
125 KOG2243 Ca2+ release channel ( 94.2 0.14 3E-06 42.2 5.3 59 11-70 4062-4120(5019)
126 KOG1707 Predicted Ras related/ 94.1 0.13 2.9E-06 38.2 4.9 81 4-90 313-398 (625)
127 KOG0035 Ca2+-binding actin-bun 93.7 0.32 6.9E-06 38.1 6.4 66 75-140 744-814 (890)
128 KOG0998 Synaptic vesicle prote 93.5 0.15 3.3E-06 40.0 4.6 62 76-139 281-342 (847)
129 PLN02952 phosphoinositide phos 93.3 2.3 4.9E-05 32.4 10.0 86 19-105 13-109 (599)
130 KOG4578 Uncharacterized conser 93.1 0.067 1.5E-06 36.9 1.9 61 45-107 336-399 (421)
131 KOG4347 GTPase-activating prot 92.7 0.33 7.2E-06 36.5 5.1 73 59-132 535-608 (671)
132 PF05042 Caleosin: Caleosin re 92.4 1.2 2.7E-05 28.0 6.6 26 79-105 140-165 (174)
133 PF09069 EF-hand_3: EF-hand; 92.2 1.2 2.6E-05 24.9 7.6 63 6-71 3-76 (90)
134 COG4103 Uncharacterized protei 91.9 1.8 4E-05 26.3 7.6 94 10-107 34-130 (148)
135 PF01023 S_100: S-100/ICaBP ty 91.2 0.51 1.1E-05 22.6 3.2 33 2-34 2-36 (44)
136 KOG1264 Phospholipase C [Lipid 90.2 1.3 2.9E-05 34.7 6.0 132 8-140 146-291 (1267)
137 KOG3449 60S acidic ribosomal p 90.1 2.4 5.2E-05 24.5 5.7 45 80-124 3-47 (112)
138 PF11116 DUF2624: Protein of u 89.5 2.3 5.1E-05 23.5 5.5 34 93-126 13-46 (85)
139 KOG0998 Synaptic vesicle prote 89.3 1 2.2E-05 35.6 5.1 130 6-140 11-188 (847)
140 KOG0039 Ferric reductase, NADH 89.3 1.4 3E-05 33.9 5.7 77 56-139 2-86 (646)
141 PF07308 DUF1456: Protein of u 89.3 2.1 4.5E-05 22.6 4.8 32 95-126 14-45 (68)
142 PLN02228 Phosphoinositide phos 88.9 3.8 8.3E-05 31.0 7.5 65 38-104 20-90 (567)
143 PLN02222 phosphoinositide phos 88.5 3.5 7.6E-05 31.3 7.1 65 39-105 22-89 (581)
144 PF00404 Dockerin_1: Dockerin 86.8 0.89 1.9E-05 18.0 1.9 15 88-102 1-15 (21)
145 PTZ00373 60S Acidic ribosomal 86.5 4.7 0.0001 23.6 6.0 45 80-124 5-49 (112)
146 PF02761 Cbl_N2: CBL proto-onc 86.1 4.1 8.9E-05 22.5 5.3 68 39-107 4-71 (85)
147 KOG2871 Uncharacterized conser 85.9 0.79 1.7E-05 32.4 2.5 62 76-137 307-369 (449)
148 KOG2871 Uncharacterized conser 85.7 0.8 1.7E-05 32.4 2.4 65 5-69 308-373 (449)
149 PLN02222 phosphoinositide phos 85.4 7.1 0.00015 29.7 7.3 64 5-70 24-90 (581)
150 PF08976 DUF1880: Domain of un 85.3 0.83 1.8E-05 26.7 2.0 32 39-70 4-35 (118)
151 PLN02230 phosphoinositide phos 84.7 6.8 0.00015 29.9 6.9 62 78-140 29-100 (598)
152 KOG4286 Dystrophin-like protei 84.4 5.3 0.00011 31.2 6.2 94 45-141 473-579 (966)
153 PF04558 tRNA_synt_1c_R1: Glut 84.4 7.9 0.00017 24.3 6.2 64 59-123 66-129 (164)
154 PLN02228 Phosphoinositide phos 84.0 11 0.00024 28.6 7.8 63 6-70 24-92 (567)
155 PF05099 TerB: Tellurite resis 83.8 6.1 0.00013 23.6 5.5 79 19-99 36-117 (140)
156 PRK09430 djlA Dna-J like membr 83.7 11 0.00025 25.6 11.1 101 18-123 67-175 (267)
157 KOG3866 DNA-binding protein of 83.4 4.1 8.9E-05 28.3 4.9 61 11-71 249-325 (442)
158 PLN02230 phosphoinositide phos 83.4 13 0.00027 28.6 7.8 64 6-70 29-102 (598)
159 PF08461 HTH_12: Ribonuclease 83.1 2.7 6E-05 21.9 3.3 38 90-127 9-46 (66)
160 cd05833 Ribosomal_P2 Ribosomal 82.9 7.2 0.00016 22.7 6.0 44 81-124 4-47 (109)
161 PLN02223 phosphoinositide phos 82.0 11 0.00024 28.5 7.0 62 78-140 16-90 (537)
162 PF12174 RST: RCD1-SRO-TAF4 (R 80.2 6.9 0.00015 20.8 5.4 48 57-107 7-54 (70)
163 PF12174 RST: RCD1-SRO-TAF4 (R 79.8 2.8 6E-05 22.3 2.6 48 20-70 6-53 (70)
164 KOG1265 Phospholipase C [Lipid 79.4 25 0.00053 28.5 8.2 65 6-70 221-299 (1189)
165 PF11116 DUF2624: Protein of u 78.1 9.5 0.00021 21.1 8.2 67 21-87 13-82 (85)
166 PF14513 DAG_kinase_N: Diacylg 77.9 13 0.00028 22.6 5.6 33 92-124 46-79 (138)
167 PLN00138 large subunit ribosom 76.7 13 0.00028 21.8 5.9 43 82-124 5-47 (113)
168 KOG0506 Glutaminase (contains 76.4 26 0.00057 26.2 7.3 60 11-70 91-158 (622)
169 cd07316 terB_like_DjlA N-termi 76.2 12 0.00025 21.1 8.6 81 19-101 12-96 (106)
170 PF03672 UPF0154: Uncharacteri 75.8 9.4 0.0002 19.9 4.2 33 19-51 28-60 (64)
171 cd07176 terB tellurite resista 75.7 11 0.00023 21.4 4.6 80 19-101 15-100 (111)
172 TIGR01848 PHA_reg_PhaR polyhyd 74.5 8.2 0.00018 22.3 3.6 20 51-70 12-31 (107)
173 cd07313 terB_like_2 tellurium 74.4 6.4 0.00014 22.2 3.4 52 55-107 12-66 (104)
174 PF07308 DUF1456: Protein of u 74.1 11 0.00024 19.9 5.0 45 23-67 14-58 (68)
175 KOG3077 Uncharacterized conser 72.8 27 0.00059 23.8 11.5 67 4-70 62-129 (260)
176 KOG4004 Matricellular protein 72.7 1.6 3.5E-05 28.2 0.6 54 84-139 193-247 (259)
177 PRK00523 hypothetical protein; 71.2 14 0.0003 19.8 4.2 33 19-51 36-68 (72)
178 PLN02223 phosphoinositide phos 70.8 37 0.00081 25.8 7.2 64 6-70 16-92 (537)
179 KOG2301 Voltage-gated Ca2+ cha 70.2 12 0.00025 32.2 4.9 67 3-70 1414-1484(1592)
180 PF01885 PTS_2-RNA: RNA 2'-pho 70.1 9.5 0.00021 24.5 3.7 37 88-124 26-62 (186)
181 PRK00819 RNA 2'-phosphotransfe 69.3 14 0.00029 23.7 4.2 35 89-123 28-62 (179)
182 COG4103 Uncharacterized protei 69.3 24 0.00051 21.7 6.5 57 82-140 34-92 (148)
183 PF14513 DAG_kinase_N: Diacylg 68.8 16 0.00035 22.3 4.2 38 18-55 44-82 (138)
184 PF07879 PHB_acc_N: PHB/PHA ac 68.4 8.8 0.00019 19.9 2.6 39 85-123 10-58 (64)
185 PF04157 EAP30: EAP30/Vps36 fa 68.4 31 0.00068 22.7 9.5 37 90-126 109-148 (223)
186 PF09068 EF-hand_2: EF hand; 66.9 8.3 0.00018 23.1 2.8 67 40-106 39-125 (127)
187 TIGR02675 tape_meas_nterm tape 65.8 9.3 0.0002 20.5 2.6 29 41-69 12-41 (75)
188 PF02761 Cbl_N2: CBL proto-onc 65.4 21 0.00046 19.8 5.4 50 20-69 20-69 (85)
189 COG3763 Uncharacterized protei 63.6 21 0.00045 19.0 4.2 34 19-52 35-68 (71)
190 PF01885 PTS_2-RNA: RNA 2'-pho 62.8 18 0.00039 23.2 3.9 36 17-52 27-62 (186)
191 PF03979 Sigma70_r1_1: Sigma-7 62.7 12 0.00026 20.3 2.8 46 5-54 6-51 (82)
192 PF09336 Vps4_C: Vps4 C termin 62.5 15 0.00033 18.9 2.9 27 94-120 29-55 (62)
193 KOG4301 Beta-dystrobrevin [Cyt 62.4 37 0.0008 24.2 5.4 86 49-140 117-213 (434)
194 PF12419 DUF3670: SNF2 Helicas 62.2 22 0.00048 21.6 4.1 49 91-139 80-138 (141)
195 cd04411 Ribosomal_P1_P2_L12p R 60.4 31 0.00068 19.9 6.3 30 95-124 17-46 (105)
196 PRK00819 RNA 2'-phosphotransfe 60.1 28 0.0006 22.3 4.3 36 17-52 28-63 (179)
197 COG2818 Tag 3-methyladenine DN 60.1 6 0.00013 25.3 1.4 42 76-117 53-94 (188)
198 PRK01844 hypothetical protein; 59.4 26 0.00057 18.7 4.2 33 19-51 35-67 (72)
199 PF10437 Lip_prot_lig_C: Bacte 59.1 26 0.00056 19.1 3.7 43 96-140 43-86 (86)
200 PF11829 DUF3349: Protein of u 59.0 32 0.00069 19.6 5.3 65 59-123 20-85 (96)
201 KOG4070 Putative signal transd 58.6 30 0.00066 21.5 4.1 82 7-88 13-108 (180)
202 KOG4403 Cell surface glycoprot 58.6 60 0.0013 24.0 6.1 62 5-70 67-129 (575)
203 PF12486 DUF3702: ImpA domain 57.8 43 0.00093 20.7 6.0 33 3-35 66-98 (148)
204 PF11848 DUF3368: Domain of un 56.6 22 0.00049 17.1 3.9 33 91-123 14-47 (48)
205 PHA02105 hypothetical protein 56.4 26 0.00056 17.8 3.5 46 95-140 5-55 (68)
206 PF13623 SurA_N_2: SurA N-term 53.7 50 0.0011 20.3 7.9 40 101-140 96-145 (145)
207 PF07128 DUF1380: Protein of u 53.4 37 0.0008 20.8 3.9 31 95-125 27-57 (139)
208 TIGR03573 WbuX N-acetyl sugar 52.5 55 0.0012 23.2 5.3 43 92-140 300-342 (343)
209 PRK06402 rpl12p 50S ribosomal 52.4 45 0.00098 19.4 6.2 31 94-124 16-46 (106)
210 PF12238 MSA-2c: Merozoite sur 52.1 66 0.0014 21.2 5.9 100 6-107 13-114 (205)
211 PF12631 GTPase_Cys_C: Catalyt 51.7 25 0.00055 18.6 2.8 13 36-48 57-69 (73)
212 TIGR01639 P_fal_TIGR01639 Plas 50.7 34 0.00074 17.5 3.9 30 94-123 9-38 (61)
213 cd08819 CARD_MDA5_2 Caspase ac 50.3 44 0.00096 18.7 4.8 47 91-140 30-76 (88)
214 KOG0506 Glutaminase (contains 50.3 66 0.0014 24.2 5.3 59 82-140 90-156 (622)
215 PF09373 PMBR: Pseudomurein-bi 49.7 24 0.00053 15.5 2.1 16 92-107 2-17 (33)
216 PF15144 DUF4576: Domain of un 49.2 8.7 0.00019 20.8 0.7 44 18-62 36-79 (88)
217 smart00513 SAP Putative DNA-bi 47.3 27 0.00059 15.4 2.6 18 94-111 3-20 (35)
218 KOG3449 60S acidic ribosomal p 47.1 58 0.0013 19.0 6.6 53 10-67 5-57 (112)
219 TIGR00624 tag DNA-3-methyladen 47.0 76 0.0016 20.4 5.6 104 3-109 50-168 (179)
220 KOG2301 Voltage-gated Ca2+ cha 45.8 14 0.0003 31.8 1.7 67 73-140 1412-1482(1592)
221 cd07177 terB_like tellurium re 45.7 51 0.0011 18.1 7.2 81 19-101 12-95 (104)
222 cd08330 CARD_ASC_NALP1 Caspase 45.0 52 0.0011 17.9 4.1 44 92-140 27-70 (82)
223 PF08414 NADPH_Ox: Respiratory 45.0 60 0.0013 18.6 8.0 62 41-107 29-93 (100)
224 PF12983 DUF3867: Protein of u 45.0 81 0.0018 20.1 5.7 83 22-127 3-89 (186)
225 PF01316 Arg_repressor: Argini 44.9 49 0.0011 17.6 3.9 32 93-124 18-49 (70)
226 PF07862 Nif11: Nitrogen fixat 44.8 34 0.00073 16.4 2.4 21 24-44 28-48 (49)
227 KOG4301 Beta-dystrobrevin [Cyt 44.7 61 0.0013 23.2 4.3 60 10-70 114-173 (434)
228 TIGR00135 gatC glutamyl-tRNA(G 44.6 56 0.0012 18.2 4.1 27 95-121 1-27 (93)
229 PF10281 Ish1: Putative stress 44.6 33 0.00071 15.5 2.5 18 96-113 5-22 (38)
230 PTZ00373 60S Acidic ribosomal 44.4 66 0.0014 18.9 5.7 51 11-66 8-58 (112)
231 PF02037 SAP: SAP domain; Int 43.0 30 0.00065 15.4 1.9 18 94-111 3-20 (35)
232 KOG0039 Ferric reductase, NADH 42.6 1E+02 0.0022 24.2 5.7 78 23-106 4-89 (646)
233 PRK09430 djlA Dna-J like membr 41.9 72 0.0016 21.8 4.4 10 56-65 69-78 (267)
234 PF12987 DUF3871: Domain of un 41.9 80 0.0017 22.1 4.5 63 79-141 193-284 (323)
235 COG1859 KptA RNA:NAD 2'-phosph 41.8 68 0.0015 21.2 4.0 63 54-125 28-90 (211)
236 KOG3077 Uncharacterized conser 41.8 1.1E+02 0.0025 20.9 6.2 51 88-138 75-125 (260)
237 COG5069 SAC6 Ca2+-binding acti 41.6 1.1E+02 0.0024 23.2 5.4 79 4-88 483-564 (612)
238 PF08672 APC2: Anaphase promot 40.9 53 0.0011 16.8 3.6 28 78-106 15-44 (60)
239 PF03556 Cullin_binding: Culli 40.5 53 0.0012 19.3 3.2 82 54-141 36-117 (117)
240 TIGR03573 WbuX N-acetyl sugar 40.5 1.3E+02 0.0028 21.4 5.6 65 28-104 276-342 (343)
241 COG5562 Phage envelope protein 39.8 21 0.00046 21.6 1.4 46 91-140 53-98 (137)
242 TIGR03685 L21P_arch 50S riboso 38.0 82 0.0018 18.2 6.2 31 94-124 16-46 (105)
243 COG2818 Tag 3-methyladenine DN 37.8 34 0.00074 22.0 2.2 47 2-48 51-97 (188)
244 COG4359 Uncharacterized conser 37.0 1.2E+02 0.0026 19.8 5.4 96 18-123 9-110 (220)
245 PF00427 PBS_linker_poly: Phyc 36.9 98 0.0021 18.8 4.7 50 55-106 41-98 (131)
246 PRK00441 argR arginine repress 36.8 1E+02 0.0023 19.0 4.3 34 91-124 15-48 (149)
247 PF09851 SHOCT: Short C-termin 36.3 43 0.00093 14.4 2.2 13 92-104 14-26 (31)
248 PF11020 DUF2610: Domain of un 36.1 70 0.0015 17.5 2.9 20 117-136 52-71 (82)
249 PF09494 Slx4: Slx4 endonuclea 36.1 66 0.0014 16.5 3.6 16 93-108 43-58 (64)
250 COG1460 Uncharacterized protei 36.0 83 0.0018 18.6 3.4 29 95-123 80-108 (114)
251 PLN02859 glutamine-tRNA ligase 35.7 2.4E+02 0.0052 22.9 8.8 51 72-123 81-131 (788)
252 PRK00034 gatC aspartyl/glutamy 35.1 84 0.0018 17.4 4.2 28 94-121 2-29 (95)
253 PF09862 DUF2089: Protein of u 34.6 1E+02 0.0022 18.2 4.5 22 116-140 91-112 (113)
254 cd05833 Ribosomal_P2 Ribosomal 34.6 98 0.0021 18.1 5.7 54 11-69 6-59 (109)
255 TIGR01209 RNA ligase, Pab1020 34.4 1.6E+02 0.0035 21.5 5.2 95 12-106 163-271 (374)
256 KOG1954 Endocytosis/signaling 34.1 81 0.0017 23.2 3.7 55 80-137 446-500 (532)
257 cd01671 CARD Caspase activatio 33.9 77 0.0017 16.7 3.4 12 93-104 26-37 (80)
258 PF06384 ICAT: Beta-catenin-in 33.9 85 0.0018 17.1 3.1 21 99-119 21-41 (78)
259 cd05832 Ribosomal_L12p Ribosom 33.9 1E+02 0.0022 18.0 6.2 32 94-125 16-47 (106)
260 PF02337 Gag_p10: Retroviral G 33.7 92 0.002 17.5 3.5 14 123-136 66-79 (90)
261 PF08100 Dimerisation: Dimeris 33.7 19 0.00041 17.8 0.5 14 20-33 20-33 (51)
262 PF02885 Glycos_trans_3N: Glyc 33.5 74 0.0016 16.3 5.2 17 36-52 12-28 (66)
263 TIGR01529 argR_whole arginine 33.4 1.2E+02 0.0026 18.7 4.4 36 90-125 12-47 (146)
264 PF09412 XendoU: Endoribonucle 33.2 70 0.0015 22.0 3.2 29 41-69 101-129 (265)
265 PF13075 DUF3939: Protein of u 33.1 10 0.00022 23.1 -0.6 17 90-106 37-53 (140)
266 PF00690 Cation_ATPase_N: Cati 32.9 76 0.0016 16.3 3.1 30 81-110 7-36 (69)
267 KOG1954 Endocytosis/signaling 32.6 1.3E+02 0.0029 22.1 4.5 24 79-102 478-501 (532)
268 COG2058 RPP1A Ribosomal protei 32.5 1.1E+02 0.0023 17.9 5.6 40 84-124 7-46 (109)
269 cd05831 Ribosomal_P1 Ribosomal 32.5 1E+02 0.0022 17.7 4.7 34 91-124 14-47 (103)
270 PRK03341 arginine repressor; P 32.4 1.2E+02 0.0025 19.3 3.9 35 90-124 25-59 (168)
271 cd08327 CARD_RAIDD Caspase act 31.7 1E+02 0.0022 17.4 4.0 13 92-104 33-45 (94)
272 PF01498 HTH_Tnp_Tc3_2: Transp 31.2 82 0.0018 16.3 2.8 32 92-123 11-42 (72)
273 cd08332 CARD_CASP2 Caspase act 30.9 1E+02 0.0022 17.1 3.9 10 96-105 67-76 (90)
274 KOG4286 Dystrophin-like protei 30.8 2.4E+02 0.0051 22.9 5.8 60 9-69 473-532 (966)
275 PRK10353 3-methyl-adenine DNA 30.4 19 0.00041 23.2 0.2 45 76-120 52-96 (187)
276 PRK08181 transposase; Validate 30.1 1.5E+02 0.0032 20.4 4.4 11 94-104 39-49 (269)
277 PF07499 RuvA_C: RuvA, C-termi 29.9 73 0.0016 15.1 4.3 26 98-125 4-29 (47)
278 KOG2419 Phosphatidylserine dec 29.8 32 0.00069 26.9 1.3 62 45-106 440-533 (975)
279 PF04433 SWIRM: SWIRM domain; 29.7 35 0.00077 18.6 1.2 38 47-88 42-79 (86)
280 COG0721 GatC Asp-tRNAAsn/Glu-t 29.5 1.1E+02 0.0025 17.3 3.9 29 94-122 2-30 (96)
281 PRK14981 DNA-directed RNA poly 29.5 1.2E+02 0.0027 17.6 3.9 25 97-121 81-105 (112)
282 cd08324 CARD_NOD1_CARD4 Caspas 29.3 1.1E+02 0.0024 17.0 4.6 12 92-103 27-38 (85)
283 KOG3341 RNA polymerase II tran 28.8 1.8E+02 0.004 19.4 5.4 39 19-57 113-155 (249)
284 COG2036 HHT1 Histones H3 and H 28.3 1.2E+02 0.0026 17.1 6.5 31 80-110 57-87 (91)
285 PF12872 OST-HTH: OST-HTH/LOTU 28.1 96 0.0021 16.0 5.3 52 5-69 7-58 (74)
286 PF08671 SinI: Anti-repressor 28.0 61 0.0013 14.0 1.6 11 95-105 17-27 (30)
287 PF08355 EF_assoc_1: EF hand a 27.8 47 0.001 17.9 1.4 17 123-139 11-27 (76)
288 PF09682 Holin_LLH: Phage holi 27.7 1.3E+02 0.0028 17.3 3.9 35 89-123 62-100 (108)
289 KOG1785 Tyrosine kinase negati 27.5 86 0.0019 23.0 3.0 65 38-103 171-235 (563)
290 smart00222 Sec7 Sec7 domain. D 27.4 1.7E+02 0.0038 18.7 4.6 33 56-88 149-183 (187)
291 PF12949 HeH: HeH/LEM domain; 27.4 54 0.0012 14.8 1.4 18 94-111 3-20 (35)
292 PF14932 HAUS-augmin3: HAUS au 27.4 2E+02 0.0044 19.5 6.0 47 59-107 6-55 (256)
293 PTZ00315 2'-phosphotransferase 27.3 1.3E+02 0.0029 23.3 4.1 37 88-124 399-435 (582)
294 COG1158 Rho Transcription term 26.9 97 0.0021 22.4 3.1 78 59-140 332-418 (422)
295 PF09415 CENP-X: CENP-S associ 26.7 1.1E+02 0.0024 16.3 4.7 39 61-105 28-66 (72)
296 cd08032 LARP_7 La RNA-binding 26.1 1.2E+02 0.0027 16.6 3.3 27 84-110 29-55 (82)
297 cd08315 Death_TRAILR_DR4_DR5 D 26.0 1.3E+02 0.0029 16.9 9.7 87 6-120 4-90 (96)
298 KOG4403 Cell surface glycoprot 25.9 69 0.0015 23.7 2.3 31 40-70 66-96 (575)
299 cd07894 Adenylation_RNA_ligase 25.8 1.7E+02 0.0036 21.0 4.2 22 17-38 136-157 (342)
300 cd00076 H4 Histone H4, one of 25.8 1.3E+02 0.0028 16.7 8.3 69 38-110 13-81 (85)
301 PF13592 HTH_33: Winged helix- 25.7 1E+02 0.0022 15.5 3.7 33 93-125 3-36 (60)
302 TIGR03798 ocin_TIGR03798 bacte 25.6 1.1E+02 0.0023 15.7 3.8 25 23-47 25-49 (64)
303 KOG0869 CCAAT-binding factor, 25.1 1.9E+02 0.004 18.3 8.5 52 61-123 64-115 (168)
304 PF05788 Orbi_VP1: Orbivirus R 25.0 1.4E+02 0.003 25.1 3.9 39 88-126 1131-1169(1301)
305 smart00874 B5 tRNA synthetase 24.9 1.1E+02 0.0024 15.7 3.6 15 95-109 19-33 (71)
306 PRK09389 (R)-citramalate synth 24.6 1.6E+02 0.0034 22.3 4.1 42 99-140 322-365 (488)
307 PF10815 ComZ: ComZ; InterPro 24.5 1.1E+02 0.0024 15.4 3.3 25 99-123 16-40 (56)
308 cd00086 homeodomain Homeodomai 24.4 99 0.0021 14.9 6.0 40 3-49 10-49 (59)
309 PLN02508 magnesium-protoporphy 24.2 2.1E+02 0.0045 20.6 4.2 80 6-90 41-122 (357)
310 TIGR02613 mob_myst_B mobile my 24.2 1.7E+02 0.0036 18.8 3.7 22 89-110 126-147 (186)
311 cd01047 ACSF Aerobic Cyclase S 24.2 1.9E+02 0.0042 20.4 4.0 80 6-90 25-106 (323)
312 PRK09462 fur ferric uptake reg 24.1 1.8E+02 0.0039 17.7 5.1 29 21-49 32-60 (148)
313 PF09967 DUF2201: VWA-like dom 24.0 88 0.0019 18.6 2.3 19 89-107 5-23 (126)
314 PF07848 PaaX: PaaX-like prote 23.8 1.3E+02 0.0028 15.9 3.2 42 80-123 6-47 (70)
315 PF14848 HU-DNA_bdg: DNA-bindi 23.6 1.7E+02 0.0037 17.3 4.2 29 92-120 26-54 (124)
316 KOG1785 Tyrosine kinase negati 23.5 3.2E+02 0.0068 20.3 7.2 83 19-107 187-275 (563)
317 PF06648 DUF1160: Protein of u 23.4 1.8E+02 0.0039 17.5 6.2 44 76-122 35-79 (122)
318 PRK10945 gene expression modul 23.0 1.4E+02 0.003 16.0 3.5 15 93-107 33-47 (72)
319 cd03035 ArsC_Yffb Arsenate Red 22.9 83 0.0018 18.0 2.0 13 95-107 36-48 (105)
320 PF06226 DUF1007: Protein of u 22.9 1.4E+02 0.003 19.6 3.2 23 85-107 57-79 (212)
321 PF03484 B5: tRNA synthetase B 22.5 1.3E+02 0.0028 15.6 2.9 16 108-123 16-31 (70)
322 PF12995 DUF3879: Domain of un 22.5 2.2E+02 0.0047 18.2 4.2 11 116-126 45-55 (186)
323 PLN00138 large subunit ribosom 22.5 1.8E+02 0.0039 17.1 5.7 50 12-66 7-56 (113)
324 KOG4629 Predicted mechanosensi 22.3 2.9E+02 0.0063 22.2 5.1 56 45-107 407-462 (714)
325 KOG4629 Predicted mechanosensi 21.7 2.6E+02 0.0056 22.5 4.8 55 78-139 404-458 (714)
326 KOG0113 U1 small nuclear ribon 21.7 78 0.0017 22.2 1.9 47 6-52 79-126 (335)
327 COG1438 ArgR Arginine represso 21.5 1.7E+02 0.0037 18.2 3.2 33 92-124 18-50 (150)
328 PRK04280 arginine repressor; P 21.1 2.1E+02 0.0046 17.7 3.6 32 93-124 17-48 (148)
329 PRK03095 prsA peptidylprolyl i 20.9 2.3E+02 0.005 19.6 4.1 18 53-70 29-46 (287)
330 cd08033 LARP_6 La RNA-binding 20.8 1.6E+02 0.0035 16.0 2.7 35 86-120 26-60 (77)
331 PF07492 Trehalase_Ca-bi: Neut 20.7 24 0.00053 15.3 -0.4 17 118-134 3-19 (30)
332 PF15017 AF1Q: Drug resistance 20.0 68 0.0015 17.9 1.1 16 16-31 69-84 (87)
333 PF04157 EAP30: EAP30/Vps36 fa 20.0 2.7E+02 0.0059 18.3 6.3 111 7-123 98-214 (223)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=100.00 E-value=2.8e-31 Score=160.52 Aligned_cols=138 Identities=30% Similarity=0.566 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC-CcchHHHHH
Q 037913 2 KEKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS-GEEEKMNDL 80 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-~~~~~~~~~ 80 (141)
++++.+|++.|..+|++++|.|+..+|..+++.+|+.++.+++..++..++. +++.|+|.+|+.++... .....++++
T Consensus 16 ~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel 94 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEEL 94 (160)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHH
Confidence 4688999999999999999999999999999999999999999999999998 89999999999999986 466678999
Q ss_pred HHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 81 KEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 81 ~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
..+|+.||.+++|+|+..++..++..+|..+++++++.++..++.+++|.|+|++|.+.+
T Consensus 95 ~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 95 REAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999865
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.97 E-value=8.9e-29 Score=151.80 Aligned_cols=139 Identities=39% Similarity=0.715 Sum_probs=129.6
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCc-ch----HH
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGE-EE----KM 77 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~-~~----~~ 77 (141)
.+...+..+|..+|++++|+|+..++..+++.+|..++..++..++..+|.+++|.|++.+|+.++..... .. ..
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 56788999999999999999999999999999999999999999999999999999999999999987422 11 34
Q ss_pred HHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhhC
Q 037913 78 NDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMMS 141 (141)
Q Consensus 78 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 141 (141)
+.++.+|+.+|.+++|+||..||+.++..+|.+.+.+++..+++.++.+++|.|+|++|..+|.
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999999999999999999998874
No 3
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=3.6e-25 Score=136.86 Aligned_cols=139 Identities=30% Similarity=0.585 Sum_probs=127.7
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC-CcchHHHHHH
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS-GEEEKMNDLK 81 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-~~~~~~~~~~ 81 (141)
.++..+..+|..+|++++|.|+..+|..+++.++..++...+..++..++.+++|.|++.+|+..+... ......+.+.
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 93 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEIL 93 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHH
Confidence 567889999999999999999999999999999988899999999999999999999999999987653 2333456899
Q ss_pred HHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhhC
Q 037913 82 EAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMMS 141 (141)
Q Consensus 82 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 141 (141)
.+|+.+|.+++|.|+..||..++...|..++..++..++..++.+++|.|+|++|..+++
T Consensus 94 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 94 KAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998873
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.5e-25 Score=131.20 Aligned_cols=139 Identities=32% Similarity=0.536 Sum_probs=131.0
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC-CcchHHHHHH
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS-GEEEKMNDLK 81 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-~~~~~~~~~~ 81 (141)
++...++..|..||++++|+|...+|+.+++++|+.+...++..++..++.++.|.|+|++|+..+... ......++++
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~ 109 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIK 109 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999999998764 4455788999
Q ss_pred HHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhhC
Q 037913 82 EAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMMS 141 (141)
Q Consensus 82 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 141 (141)
.+|+.+|.+++|.||..+|+.+...+|..++++++..++..++.+++|.|+-++|..+|+
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998875
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.94 E-value=1.6e-24 Score=132.64 Aligned_cols=138 Identities=33% Similarity=0.657 Sum_probs=126.8
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC-CcchHHHHHH
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS-GEEEKMNDLK 81 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-~~~~~~~~~~ 81 (141)
++++.+...|..+|.+++|.|+..+|..++..++..++...+..++..++.+++|.|++++|+..+... ......+.+.
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 87 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIK 87 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHH
Confidence 567889999999999999999999999999999988889999999999999999999999999998753 2334556789
Q ss_pred HHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 82 EAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 82 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
.+|..+|.+++|.|+..++..++..+|..++.+.+..++..++.+++|.|+|++|..++
T Consensus 88 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.91 E-value=1.8e-22 Score=119.46 Aligned_cols=136 Identities=21% Similarity=0.416 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC-CcchHHHHH
Q 037913 2 KEKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS-GEEEKMNDL 80 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-~~~~~~~~~ 80 (141)
..++.++.+.|..+|+|+||.|..++++..+.++|-.++.+++..++... .|.|+|.-|+.++..+ .....++.+
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I 103 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVI 103 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHH
Confidence 35889999999999999999999999999999999999999999999654 7899999999999886 566678899
Q ss_pred HHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhhC
Q 037913 81 KEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMMS 141 (141)
Q Consensus 81 ~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 141 (141)
..+|+.||.++.|+|..+.++.+|...|..+++++|+.+++.+..+..|.|+|..|..+++
T Consensus 104 ~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 104 LNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988763
No 7
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.90 E-value=8.2e-22 Score=123.14 Aligned_cols=129 Identities=26% Similarity=0.460 Sum_probs=120.7
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHH
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCVEAI-GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAF 84 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f 84 (141)
..+...|+..|+++.|.|+.+|+..+|... .-+.+.+.+..|+..+|.+..|.|+++||..++. ....|+.+|
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~------~i~~Wr~vF 130 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK------YINQWRNVF 130 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH------HHHHHHHHH
Confidence 467889999999999999999999999865 4457889999999999999999999999999998 688999999
Q ss_pred HHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 85 KMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 85 ~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
+.+|.|++|+|+..||+++|..+|..++++..+.+++.++....|.|.+++|.+++
T Consensus 131 ~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~cc 186 (221)
T KOG0037|consen 131 RTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCC 186 (221)
T ss_pred HhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHH
Confidence 99999999999999999999999999999999999999998889999999999875
No 8
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.89 E-value=1.5e-21 Score=113.68 Aligned_cols=137 Identities=21% Similarity=0.468 Sum_probs=123.2
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC--CCCcccHHHHHHHHhc---CCcchHH
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDAD--GDGLLGFDDFVRLVEG---SGEEEKM 77 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--~~~~i~~~ef~~~~~~---~~~~~~~ 77 (141)
++..+++++|..||..+||.|+..+...+++.+|.+++..++.+....+..+ +-.+++|++|+..++. ....-..
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ 87 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTY 87 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcH
Confidence 4678899999999999999999999999999999999999999999998766 4578999999998876 3455566
Q ss_pred HHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 78 NDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 78 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
+..-.-.+.||+.++|+|...|++.+|..+|..+++++++.+++-.. |.+|.|+|+.|+..+
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHH
Confidence 78888899999999999999999999999999999999999998774 678999999998754
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-20 Score=118.08 Aligned_cols=134 Identities=28% Similarity=0.522 Sum_probs=112.7
Q ss_pred hHHHHHHHHHhhhCCC-CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc-ccHHHHHHHHhcCC-cchHHHH
Q 037913 3 EKHQQYERVFNHFDSN-GDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGL-LGFDDFVRLVEGSG-EEEKMND 79 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~-i~~~ef~~~~~~~~-~~~~~~~ 79 (141)
+++..+..+|..++.+ ++|+|+.++|..+. .+.. .....+++..++.+++|. |+|++|+..+.... .....++
T Consensus 30 ~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~---Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~K 105 (187)
T KOG0034|consen 30 NEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELAL---NPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREK 105 (187)
T ss_pred HHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhc---CcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHH
Confidence 5889999999999999 99999999999887 3332 344578888898888888 99999999998864 4444459
Q ss_pred HHHHHHHhhccCCCccCHHHHHHHHHHh-CCCCC--HH----HHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 80 LKEAFKMYEMDGCGCITPKSLKRMLSRL-GQSKS--DD----ECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 80 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~~~~--~~----~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
++.+|+.||.+++|+|+.+|+.+++..+ |...+ ++ .++..+..+|.++||+|+++||..++
T Consensus 106 l~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 106 LRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 9999999999999999999999999987 44444 33 35778899999999999999999875
No 10
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.85 E-value=7.4e-20 Score=123.68 Aligned_cols=134 Identities=22% Similarity=0.440 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHH
Q 037913 2 KEKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGE-LSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDL 80 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 80 (141)
+++..+++.+|..+|.+++|.++..++...+..+..+ ........++..+|.+.+|.|+|++|...+.. .+.++
T Consensus 10 ~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l 84 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELEL 84 (463)
T ss_pred HHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHH
Confidence 4667889999999999999999999999999999777 78888899999999999999999999999996 78899
Q ss_pred HHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 81 KEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 81 ~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
..+|...|.++||.|+.+|+.+.|+.+|+.++++++.++++++|+++++.|++++|.+++
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999998875
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.85 E-value=7.8e-20 Score=114.43 Aligned_cols=135 Identities=21% Similarity=0.374 Sum_probs=114.3
Q ss_pred HHHHHHHhhhCCC-CCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHH
Q 037913 6 QQYERVFNHFDSN-GDRRISPSELQQCVEAIGG-ELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEA 83 (141)
Q Consensus 6 ~~~~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 83 (141)
.+++.+|+.|-.+ ++|.++.++|+.+++.+.. .-+......+++.+|.+++|.|+|.||+..++........+.+..+
T Consensus 26 ~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~ 105 (193)
T KOG0044|consen 26 KEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWA 105 (193)
T ss_pred HHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhh
Confidence 3455556665443 5999999999999999864 5677888999999999999999999999999988888888899999
Q ss_pred HHHhhccCCCccCHHHHHHHHHHh----CC------CCCH-HHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 84 FKMYEMDGCGCITPKSLKRMLSRL----GQ------SKSD-DECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 84 f~~~D~~~~g~I~~~e~~~~l~~~----~~------~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
|+.+|.+++|.|++.|+..+++.+ |. ..++ +-+..+|+.+|.|+||.||+++|...+
T Consensus 106 F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 106 FRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGC 173 (193)
T ss_pred heeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHh
Confidence 999999999999999999998875 32 1223 446899999999999999999998764
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.65 E-value=6.2e-15 Score=107.01 Aligned_cols=101 Identities=22% Similarity=0.371 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhC-CCCCHHH---HHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHH
Q 037913 2 KEKHQQYERVFNHFDSNGDRRISPSELQQCVEAIG-GELSLAE---AEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKM 77 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 77 (141)
+++++++.+.|..+|+|++|.+ +..+++.+| ..++..+ +..++..+|.+++|.|+++||+.++.........
T Consensus 139 ~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~se 214 (644)
T PLN02964 139 TQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAA 214 (644)
T ss_pred HHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCH
Confidence 5678899999999999999997 888899999 5777776 7999999999999999999999999865445567
Q ss_pred HHHHHHHHHhhccCCCccCHHHHHHHHHH
Q 037913 78 NDLKEAFKMYEMDGCGCITPKSLKRMLSR 106 (141)
Q Consensus 78 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~ 106 (141)
+++..+|+.+|.+++|.|+.+||..++..
T Consensus 215 EEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 215 NKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 78999999999999999999999999988
No 13
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.63 E-value=5.8e-15 Score=92.70 Aligned_cols=93 Identities=29% Similarity=0.411 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHH
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKE 82 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 82 (141)
+.+..|+.+|..+|+|++|.|+..||+.+|..+|+.+++...+.+++.++..++|.|.|.+|++.+. ....+..
T Consensus 121 ~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv------~L~~lt~ 194 (221)
T KOG0037|consen 121 KYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV------VLQRLTE 194 (221)
T ss_pred HHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHH------HHHHHHH
Confidence 4578899999999999999999999999999999999999999999999877789999999999998 5778899
Q ss_pred HHHHhhccCCCccC--HHHHH
Q 037913 83 AFKMYEMDGCGCIT--PKSLK 101 (141)
Q Consensus 83 ~f~~~D~~~~g~I~--~~e~~ 101 (141)
+|+..|.+.+|.|+ .++|.
T Consensus 195 ~Fr~~D~~q~G~i~~~y~dfl 215 (221)
T KOG0037|consen 195 AFRRRDTAQQGSITISYDDFL 215 (221)
T ss_pred HHHHhccccceeEEEeHHHHH
Confidence 99999999888665 44443
No 14
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=4.3e-15 Score=98.15 Aligned_cols=137 Identities=18% Similarity=0.268 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC----cchH
Q 037913 2 KEKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGE-LSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSG----EEEK 76 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~----~~~~ 76 (141)
+..+.+..+.|...|.|++|.++.+||..++.--.++ +..-.+..-+...|.+++|.|+++||+.-+.... .+.+
T Consensus 159 ~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeW 238 (325)
T KOG4223|consen 159 KKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEW 238 (325)
T ss_pred HHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccc
Confidence 3456778899999999999999999999987765433 5566777888899999999999999998887642 1222
Q ss_pred -HHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHh
Q 037913 77 -MNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRI 138 (141)
Q Consensus 77 -~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 138 (141)
..+-...+...|.|++|.++.+|+..++...+......+++.++...|.|++|++|++|-+.
T Consensus 239 v~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 239 VLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 22344667788999999999999999998888888999999999999999999999998764
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.55 E-value=3.1e-14 Score=79.23 Aligned_cols=65 Identities=22% Similarity=0.411 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhc-cCCCccCHHHHHHHHHH-hCCCCCH-HHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 76 KMNDLKEAFKMYEM-DGCGCITPKSLKRMLSR-LGQSKSD-DECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 76 ~~~~~~~~f~~~D~-~~~g~I~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
....+..+|+.||. +++|+|+..||+.++.. +|..++. ++++.+++.+|.|++|.|+|+||..++
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~ 73 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELI 73 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 45678999999999 99999999999999999 8887888 899999999999999999999999876
No 16
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.55 E-value=2.8e-14 Score=75.65 Aligned_cols=62 Identities=45% Similarity=0.772 Sum_probs=54.4
Q ss_pred HHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHH----HHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 79 DLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDE----CKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 79 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
.++.+|..+|.+++|.|+.+||..++..++...++.. ++.++..+|.|++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3788999999999999999999999999987665544 4556999999999999999999875
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.52 E-value=1.1e-13 Score=77.13 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=64.3
Q ss_pred ChhHHHHHHHHHhhhCC-CCCCccCHHHHHHHHHH-hCCCCCH-HHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 1 MKEKHQQYERVFNHFDS-NGDRRISPSELQQCVEA-IGGELSL-AEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 1 ~~~~~~~~~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
++..+..+..+|+.||+ +++|+|+..+|+.++.. ++-.++. .+++.++..+|.+++|.|+|+||+.++..
T Consensus 3 lE~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 3 LEKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 35678899999999999 99999999999999999 8766777 89999999999999999999999999875
No 18
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.51 E-value=6.5e-13 Score=91.43 Aligned_cols=135 Identities=21% Similarity=0.378 Sum_probs=106.4
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC-----cch---
Q 037913 5 HQQYERVFNHFDSNGDRRISPSELQQCVEAI-GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSG-----EEE--- 75 (141)
Q Consensus 5 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~-----~~~--- 75 (141)
...+..-|+.+|...+|+|+..+...++... +..++...+.. .....+.+|.|.|.+.++.+.... ...
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh--hccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 3567888999999999999999999988776 66666433221 223455678899998887765421 011
Q ss_pred ----HHHHHHHHHHHhhccCCCccCHHHHHHHHHHh----CCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhhC
Q 037913 76 ----KMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL----GQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMMS 141 (141)
Q Consensus 76 ----~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 141 (141)
....+..+|+.+|.|++|.||.+||+.+++-+ ..+++.+++..+.+.+|.|+||.|+++||+++++
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 12357888999999999999999999998775 5678999999999999999999999999998864
No 19
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.51 E-value=4.6e-13 Score=82.22 Aligned_cols=101 Identities=26% Similarity=0.548 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCC-----CHHH
Q 037913 41 LAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSK-----SDDE 115 (141)
Q Consensus 41 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~-----~~~~ 115 (141)
..++..+|..+|.+++|.|+..++...+..........++..++..+|.+++|.|+..+|..++...+... +.++
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 45678999999999999999999999999887777888999999999999999999999999998875433 3458
Q ss_pred HHHHHHhhCcCCCCcccHHHHHhhhC
Q 037913 116 CKSMIAYFDLNGDGVLNFDEFRIMMS 141 (141)
Q Consensus 116 ~~~~~~~~d~~~~g~i~~~ef~~~l~ 141 (141)
+...|+.+|.+++|.||.+++..+|+
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~ 112 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLT 112 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHH
Confidence 99999999999999999999998873
No 20
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.49 E-value=3.2e-13 Score=75.25 Aligned_cols=65 Identities=25% Similarity=0.472 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhh-ccCCC-ccCHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 76 KMNDLKEAFKMYE-MDGCG-CITPKSLKRMLSR-----LGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 76 ~~~~~~~~f~~~D-~~~~g-~I~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
....+..+|+.+| .+++| .|+.+||+.+|+. +|...++++++.+++.+|.|++|.|+|++|..++
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 4567899999998 79999 6999999999999 8888899999999999999999999999999875
No 21
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.49 E-value=5.3e-13 Score=74.37 Aligned_cols=70 Identities=24% Similarity=0.474 Sum_probs=64.4
Q ss_pred ChhHHHHHHHHHhhhC-CCCCC-ccCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 1 MKEKHQQYERVFNHFD-SNGDR-RISPSELQQCVEA-----IGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 1 ~~~~~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
++..+..+.++|+.|| ++++| .|+..+|+.+|+. ++...++.++..++..+|.+++|.|+|++|+.++..
T Consensus 3 le~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 3 LEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3567889999999998 79999 5999999999999 888889999999999999999999999999998874
No 22
>PTZ00183 centrin; Provisional
Probab=99.48 E-value=2.2e-12 Score=79.55 Aligned_cols=101 Identities=19% Similarity=0.342 Sum_probs=87.3
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHH
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCVEAI-GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAF 84 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f 84 (141)
..+..+|..+|.+++|.|+..+|..++... ....+...+..+|..+|.+++|.|+..+|..++...........+..+|
T Consensus 53 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~ 132 (158)
T PTZ00183 53 EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMI 132 (158)
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 457888999999999999999999887654 3445678899999999999999999999999998654445567899999
Q ss_pred HHhhccCCCccCHHHHHHHHHH
Q 037913 85 KMYEMDGCGCITPKSLKRMLSR 106 (141)
Q Consensus 85 ~~~D~~~~g~I~~~e~~~~l~~ 106 (141)
..+|.+++|.|+.++|..++..
T Consensus 133 ~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 133 DEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHhc
Confidence 9999999999999999998865
No 23
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=6.5e-13 Score=88.02 Aligned_cols=136 Identities=21% Similarity=0.337 Sum_probs=108.2
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC-----------
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS----------- 71 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~----------- 71 (141)
+...++..++..+|.+++|.|+..++...+....-.-...+..+-+..++.+.+|.|+|++++......
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 456788999999999999999999999988776444445666777788899999999999999887631
Q ss_pred ---CcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHhhCcCCCCcccHHHHHh
Q 037913 72 ---GEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQ-SKSDDECKSMIAYFDLNGDGVLNFDEFRI 138 (141)
Q Consensus 72 ---~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 138 (141)
....-...-...|++.|.|++|.++.+||-.+|-.-.. .+.+-.+..-+...|.|++|.|+++||+.
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfig 224 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIG 224 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHh
Confidence 11112224567799999999999999999999865433 34455568889999999999999999975
No 24
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.47 E-value=3.7e-13 Score=71.33 Aligned_cols=62 Identities=32% Similarity=0.669 Sum_probs=50.3
Q ss_pred HHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHH----HHHHHHHhCCCCCCcccHHHHHHHH
Q 037913 7 QYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAE----AEAAVEFLDADGDGLLGFDDFVRLV 68 (141)
Q Consensus 7 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~----~~~l~~~~d~~~~~~i~~~ef~~~~ 68 (141)
++.++|..+|.+++|+|+.+||..++..++...+... +..++..+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4788999999999999999999999999987665443 4444788888888888888887654
No 25
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.45 E-value=2e-12 Score=81.36 Aligned_cols=102 Identities=21% Similarity=0.273 Sum_probs=87.5
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc-----C------Cc
Q 037913 5 HQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG-----S------GE 73 (141)
Q Consensus 5 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~-----~------~~ 73 (141)
......+|..+|.|++|.|++.||..++..+......+-+.-.|+.||.+++|.|++.|++..+.. . ..
T Consensus 63 ~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~ 142 (193)
T KOG0044|consen 63 SKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDE 142 (193)
T ss_pred HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCccc
Confidence 345678999999999999999999999999877777788888899999999999999999988765 1 13
Q ss_pred chHHHHHHHHHHHhhccCCCccCHHHHHHHHHH
Q 037913 74 EEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSR 106 (141)
Q Consensus 74 ~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~ 106 (141)
...++....+|..+|.|++|.||.+||...+.+
T Consensus 143 ~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 143 ETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred ccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 345667889999999999999999999987764
No 26
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.42 E-value=8.4e-12 Score=76.10 Aligned_cols=101 Identities=20% Similarity=0.397 Sum_probs=91.0
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHH
Q 037913 5 HQQYERVFNHFDSNGDRRISPSELQQCVEAI-GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEA 83 (141)
Q Consensus 5 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 83 (141)
...+.++|..+|. ++|.|+..+|..++... ....+.+++..+|+.||.+++|.|+..+++..+.........+++..+
T Consensus 55 ~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~l 133 (160)
T COG5126 55 EAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKL 133 (160)
T ss_pred HHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHH
Confidence 3567888999998 99999999999998876 456679999999999999999999999999999988777788899999
Q ss_pred HHHhhccCCCccCHHHHHHHHHH
Q 037913 84 FKMYEMDGCGCITPKSLKRMLSR 106 (141)
Q Consensus 84 f~~~D~~~~g~I~~~e~~~~l~~ 106 (141)
++.+|.+++|.|+.++|.+.+..
T Consensus 134 l~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 134 LKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHhcCCCCCceEeHHHHHHHHhc
Confidence 99999999999999999987754
No 27
>PTZ00184 calmodulin; Provisional
Probab=99.42 E-value=8.4e-12 Score=76.17 Aligned_cols=100 Identities=20% Similarity=0.354 Sum_probs=84.9
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHH
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCVEAI-GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAF 84 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f 84 (141)
..+..+|..+|.+++|.|+.++|..++... ........+..+|..+|.+++|.|+.++|..++.........+.+..+|
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 126 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 126 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 467888999999999999999999988764 3334567789999999999999999999999987644344567888999
Q ss_pred HHhhccCCCccCHHHHHHHHH
Q 037913 85 KMYEMDGCGCITPKSLKRMLS 105 (141)
Q Consensus 85 ~~~D~~~~g~I~~~e~~~~l~ 105 (141)
..+|.+++|.|+..||..++.
T Consensus 127 ~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 127 READVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HhcCCCCCCcCcHHHHHHHHh
Confidence 999999999999999988764
No 28
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.40 E-value=2.9e-12 Score=72.51 Aligned_cols=65 Identities=29% Similarity=0.509 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhc-cC-CCccCHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 76 KMNDLKEAFKMYEM-DG-CGCITPKSLKRMLSR-----LGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 76 ~~~~~~~~f~~~D~-~~-~g~I~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
....+..+|..+|. ++ +|.|+..|++.++.. +|..++.+++..++..++.+++|.|+|++|+.++
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 35678999999997 87 699999999999986 4677899999999999999999999999999876
No 29
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.39 E-value=5e-12 Score=70.45 Aligned_cols=69 Identities=23% Similarity=0.436 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHhhhCC-CC-CCccCHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 2 KEKHQQYERVFNHFDS-NG-DRRISPSELQQCVEA---IGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
++.+..+..+|+.||. ++ +|+|+.++|+.++.. +|..++.+++..+++.+|.+++|.|+|++|+.++..
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 5678889999999997 66 899999999999973 588899999999999999999999999999998874
No 30
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.38 E-value=5e-12 Score=71.31 Aligned_cols=65 Identities=29% Similarity=0.518 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhh-ccCCC-ccCHHHHHHHHHH-hC----CCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 76 KMNDLKEAFKMYE-MDGCG-CITPKSLKRMLSR-LG----QSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 76 ~~~~~~~~f~~~D-~~~~g-~I~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
..+.++.+|+.+| .+++| .|+..|++.+|+. +| ..+++++++.++..+|.+++|.|+|++|+.++
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~ 78 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLV 78 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 4567999999997 99999 5999999999986 44 35688999999999999999999999999876
No 31
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.38 E-value=8.5e-12 Score=86.25 Aligned_cols=126 Identities=15% Similarity=0.303 Sum_probs=102.0
Q ss_pred HHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHH----hCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHH
Q 037913 10 RVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEF----LDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFK 85 (141)
Q Consensus 10 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~----~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~ 85 (141)
-.|..+|+|++|.|+.+++...-.. .++.--++++|.. .-...+|+++|++|+.++.+.......+.+...|+
T Consensus 282 ~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFr 358 (493)
T KOG2562|consen 282 CKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFR 358 (493)
T ss_pred HHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhhee
Confidence 3488899999999999999865333 3567778899983 33446899999999999998777777788999999
Q ss_pred HhhccCCCccCHHHHHHHHHHh-------C-CCCC-HHHHHHHHHhhCcCCCCcccHHHHHh
Q 037913 86 MYEMDGCGCITPKSLKRMLSRL-------G-QSKS-DDECKSMIAYFDLNGDGVLNFDEFRI 138 (141)
Q Consensus 86 ~~D~~~~g~I~~~e~~~~l~~~-------~-~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~ 138 (141)
.+|.+++|.|+..|++.+.+.. | ..+. +.....++..+.+...++||+++|+.
T Consensus 359 clDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 359 CLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred eeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 9999999999999999888764 3 2233 34457888889888899999999975
No 32
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.37 E-value=7.2e-12 Score=69.83 Aligned_cols=64 Identities=25% Similarity=0.473 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhc-cC-CCccCHHHHHHHHHH---hCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 77 MNDLKEAFKMYEM-DG-CGCITPKSLKRMLSR---LGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 77 ~~~~~~~f~~~D~-~~-~g~I~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
...+-.+|+.||. ++ +|+|+.+||+.++.. +|..++++++..+++.+|.+++|.|+|++|+.++
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm 77 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFL 77 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Confidence 4467788999998 67 899999999999974 6888999999999999999999999999999876
No 33
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.37 E-value=7.7e-12 Score=70.56 Aligned_cols=69 Identities=23% Similarity=0.444 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHhhhC-CCCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 2 KEKHQQYERVFNHFD-SNGDR-RISPSELQQCVEAI-----GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
+..+..+.++|+.|| ++++| .|+..||+.++... ....+..++..++..+|.+++|.|+|+||+.++..
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 567888999999999 78998 59999999999763 33457789999999999999999999999999874
No 34
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.36 E-value=1.1e-11 Score=69.86 Aligned_cols=69 Identities=25% Similarity=0.473 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHhhhC-CCCCCc-cCHHHHHHHHHH-hC----CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 2 KEKHQQYERVFNHFD-SNGDRR-ISPSELQQCVEA-IG----GELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d-~~~~g~-i~~~e~~~~l~~-~~----~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
+..+..+.++|+.|| ++++|+ |+..++..+++. ++ ..++..++..++..+|.+++|.|+|++|+.++..
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 566788999999997 999995 999999999986 43 3568899999999999999999999999998874
No 35
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.35 E-value=6.5e-12 Score=74.41 Aligned_cols=134 Identities=25% Similarity=0.410 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhhhCCC-----------CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 037913 3 EKHQQYERVFNHFDSN-----------GDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS 71 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~-----------~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 71 (141)
+++-++...|..+.++ +.-.++.+.+.+ +..+.-+ +.-+++...+..+|.|.++|++|+.+++-.
T Consensus 25 KdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~k-MPELken---pfk~ri~e~FSeDG~GnlsfddFlDmfSV~ 100 (189)
T KOG0038|consen 25 KDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEK-MPELKEN---PFKRRICEVFSEDGRGNLSFDDFLDMFSVF 100 (189)
T ss_pred HHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhh-ChhhhcC---hHHHHHHHHhccCCCCcccHHHHHHHHHHH
Confidence 4555666666666542 122344443332 2333222 223677788889999999999999988764
Q ss_pred -CcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHh-CCCCCHHHH----HHHHHhhCcCCCCcccHHHHHhhh
Q 037913 72 -GEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL-GQSKSDDEC----KSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 72 -~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~----~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
......-++..+|+.+|-++++.|...++...+..+ ...++++++ +.++..+|.+++|++++.+|...+
T Consensus 101 sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 101 SEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred HhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 233344578899999999999999999999999887 456777775 567888999999999999998654
No 36
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.35 E-value=1e-11 Score=70.30 Aligned_cols=69 Identities=23% Similarity=0.461 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhhhCC-CC-CCccCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 2 KEKHQQYERVFNHFDS-NG-DRRISPSELQQCVEA-----IGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
+.....+..+|..+|. ++ +|.|+..++..+++. ++..++.+++..++..+|.+++|.|+|++|+.++..
T Consensus 4 ~~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 4 EHAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4567889999999997 87 699999999999986 466789999999999999999999999999998875
No 37
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.35 E-value=1.2e-11 Score=69.78 Aligned_cols=64 Identities=25% Similarity=0.428 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhh-ccCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 77 MNDLKEAFKMYE-MDGCG-CITPKSLKRMLSRL-----GQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 77 ~~~~~~~f~~~D-~~~~g-~I~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
...+..+|+.|| .+++| +||..||+.++... +...++.++..++..+|.|++|.|+|++|+.++
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLV 79 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 456788899999 78998 59999999999763 334578899999999999999999999999876
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.34 E-value=1.2e-11 Score=69.24 Aligned_cols=65 Identities=23% Similarity=0.481 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhc--cCCCccCHHHHHHHHHH-hCCC----CCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 76 KMNDLKEAFKMYEM--DGCGCITPKSLKRMLSR-LGQS----KSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 76 ~~~~~~~~f~~~D~--~~~g~I~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
..+.++.+|..+|. +++|.|+.+++..++.. +|.. ++.+++..++..++.+++|.|+|++|+.++
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 45678999999999 89999999999999986 4544 358899999999999999999999999876
No 39
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.33 E-value=5.2e-12 Score=64.21 Aligned_cols=50 Identities=42% Similarity=0.684 Sum_probs=47.4
Q ss_pred CCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 91 GCGCITPKSLKRMLSRLGQS-KSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 91 ~~g~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
++|.|+.++|+.++..+|.. ++++++..++..+|.+++|.|+|+||+.+|
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 47999999999999888999 999999999999999999999999999886
No 40
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.33 E-value=8.9e-12 Score=66.09 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=53.4
Q ss_pred HHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 81 KEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 81 ~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
+.+|..+|.+++|.|+.+|+..++...|. +.+++..++..++.+++|.|+|++|+.++
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 59 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAM 59 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHH
Confidence 56899999999999999999999998874 78889999999999999999999999876
No 41
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.31 E-value=2.1e-11 Score=69.31 Aligned_cols=64 Identities=23% Similarity=0.373 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 75 EKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 75 ~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
.....+..+|..+|.+++|.|+.+++..+++..| ++.+++..++..++.+++|.|+|++|+.++
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~ 70 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAM 70 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence 3556789999999999999999999999999865 578899999999999999999999999876
No 42
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.31 E-value=2.7e-11 Score=62.84 Aligned_cols=62 Identities=40% Similarity=0.743 Sum_probs=58.1
Q ss_pred HHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhhC
Q 037913 80 LKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMMS 141 (141)
Q Consensus 80 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 141 (141)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++++|..+++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~~ 63 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHhC
Confidence 56789999999999999999999999999999999999999999999999999999998764
No 43
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.31 E-value=2.5e-11 Score=67.90 Aligned_cols=69 Identities=19% Similarity=0.357 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhhhCC--CCCCccCHHHHHHHHHH-hCCC----CCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 2 KEKHQQYERVFNHFDS--NGDRRISPSELQQCVEA-IGGE----LSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
++++..+..+|..+|+ +++|.|+..++..+++. ++.. .+..++..++..++.+++|.|+|++|+.++..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 5788899999999999 89999999999999986 4433 35899999999999999999999999999875
No 44
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.30 E-value=3.9e-11 Score=68.18 Aligned_cols=66 Identities=24% Similarity=0.379 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
+++..+..+|..+|++++|.|+..++..+++..+ ++..++..++..++.+++|.|++++|+.++..
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 5788999999999999999999999999999865 67889999999999999999999999988874
No 45
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.29 E-value=1.4e-10 Score=72.99 Aligned_cols=100 Identities=18% Similarity=0.361 Sum_probs=84.4
Q ss_pred HHHHHhhhCCCCCCc-cCHHHHHHHHHHhCCCCCHH-HHHHHHHHhCCCCCCcccHHHHHHHHhcCC-------cchHHH
Q 037913 8 YERVFNHFDSNGDRR-ISPSELQQCVEAIGGELSLA-EAEAAVEFLDADGDGLLGFDDFVRLVEGSG-------EEEKMN 78 (141)
Q Consensus 8 ~~~~f~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~-------~~~~~~ 78 (141)
..+++..++.+++|. |++++|...+..+....+.. .++-+|+.||.+++|.|+.+++.+.+.... ......
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 467889999999888 99999999999986665555 888999999999999999999999987731 233444
Q ss_pred HHHHHHHHhhccCCCccCHHHHHHHHHHh
Q 037913 79 DLKEAFKMYEMDGCGCITPKSLKRMLSRL 107 (141)
Q Consensus 79 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 107 (141)
.+...|..+|.++||.|+.+|++.++...
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 56678999999999999999999998764
No 46
>PLN02964 phosphatidylserine decarboxylase
Probab=99.27 E-value=1.2e-10 Score=85.20 Aligned_cols=119 Identities=17% Similarity=0.255 Sum_probs=89.0
Q ss_pred ccCHHHHHHHHHH--hCC-CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc-CCcchHHHHHHHHHHHhhccCCCccCH
Q 037913 22 RISPSELQQCVEA--IGG-ELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG-SGEEEKMNDLKEAFKMYEMDGCGCITP 97 (141)
Q Consensus 22 ~i~~~e~~~~l~~--~~~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~-~~~~~~~~~~~~~f~~~D~~~~g~I~~ 97 (141)
.++.+++...... ..+ .-...++.+.|..+|.+++|.+ ....+..+.. .........+..+|..+|.+++|.|+.
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~Idf 198 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSF 198 (644)
T ss_pred CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcH
Confidence 5666666544333 111 1123566778899999999997 5554444441 122222234899999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhhC
Q 037913 98 KSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMMS 141 (141)
Q Consensus 98 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 141 (141)
+||..++..++...+++++..+|+.+|.+++|.|+++||..+|+
T Consensus 199 dEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~ 242 (644)
T PLN02964 199 SEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLA 242 (644)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 99999999988778899999999999999999999999998763
No 47
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.25 E-value=5.9e-11 Score=62.88 Aligned_cols=60 Identities=23% Similarity=0.348 Sum_probs=54.6
Q ss_pred HHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 9 ERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 9 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
+++|..+|++++|.|+..++..++..++. +.+++..++..++.+++|.|++.+|+..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 56899999999999999999999998874 7889999999999999999999999988763
No 48
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.25 E-value=6.3e-11 Score=69.13 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 74 EEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 74 ~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
+.....+..+|..+|.|++|.|+.+|+..+. ....+..+..++..+|.|++|.||++||...+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3466789999999999999999999999876 33456778999999999999999999998765
No 49
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.24 E-value=1.1e-10 Score=65.11 Aligned_cols=65 Identities=23% Similarity=0.369 Sum_probs=55.9
Q ss_pred HHHHHHHHHHH-hhccCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 76 KMNDLKEAFKM-YEMDGCG-CITPKSLKRMLSRL-----GQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 76 ~~~~~~~~f~~-~D~~~~g-~I~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
....+..+|+. .|.+++| .||.+||+.++... +...++.++..+++.+|.|++|.|+|++|+.++
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~ 78 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 44578889998 6787876 99999999999885 345678899999999999999999999999876
No 50
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.24 E-value=1.5e-10 Score=64.62 Aligned_cols=70 Identities=21% Similarity=0.385 Sum_probs=60.5
Q ss_pred ChhHHHHHHHHHhh-hCCCCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 1 MKEKHQQYERVFNH-FDSNGDR-RISPSELQQCVEAI-----GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 1 ~~~~~~~~~~~f~~-~d~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
+++.+..|..+|+. +|++++| .|+.+||+.++... +......++..++..+|.+++|.|+|+||+.++..
T Consensus 4 le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 4 TERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 35678899999999 7787876 99999999999886 33456789999999999999999999999998874
No 51
>PF14658 EF-hand_9: EF-hand domain
Probab=99.21 E-value=5.8e-11 Score=61.54 Aligned_cols=60 Identities=27% Similarity=0.469 Sum_probs=56.5
Q ss_pred HHHHHhhccCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHhhCcCCC-CcccHHHHHhhhC
Q 037913 82 EAFKMYEMDGCGCITPKSLKRMLSRLGQ-SKSDDECKSMIAYFDLNGD-GVLNFDEFRIMMS 141 (141)
Q Consensus 82 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~ 141 (141)
.+|.++|.++.|.|...++..+|+..+. .+++.+++.+...+|+++. |.|+++.|+.+|+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 4799999999999999999999999988 8899999999999999997 9999999999885
No 52
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.20 E-value=1.9e-10 Score=59.61 Aligned_cols=61 Identities=34% Similarity=0.673 Sum_probs=56.6
Q ss_pred HHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 037913 8 YERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLV 68 (141)
Q Consensus 8 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 68 (141)
+..+|..+|.+++|.|+..++..+++.++...+.+.+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998765
No 53
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.18 E-value=1.4e-10 Score=58.84 Aligned_cols=51 Identities=29% Similarity=0.621 Sum_probs=47.9
Q ss_pred CCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 037913 19 GDRRISPSELQQCVEAIGGE-LSLAEAEAAVEFLDADGDGLLGFDDFVRLVE 69 (141)
Q Consensus 19 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 69 (141)
++|.|+.++|..++..+|.. ++..++..++..+|.+++|.|+++||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47999999999999888999 9999999999999999999999999999886
No 54
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=1.6e-09 Score=65.33 Aligned_cols=102 Identities=18% Similarity=0.362 Sum_probs=89.9
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHH
Q 037913 5 HQQYERVFNHFDSNGDRRISPSELQQCVEA-IGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEA 83 (141)
Q Consensus 5 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 83 (141)
..++.++..-+|+++.|.|++++|...+.. ++-.-+.+++..+|+.+|.+++|.|++.+|..+.......-..+++..+
T Consensus 68 k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eM 147 (172)
T KOG0028|consen 68 KEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEM 147 (172)
T ss_pred hHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHH
Confidence 456677888999999999999999998655 4666699999999999999999999999999998877666667899999
Q ss_pred HHHhhccCCCccCHHHHHHHHHH
Q 037913 84 FKMYEMDGCGCITPKSLKRMLSR 106 (141)
Q Consensus 84 f~~~D~~~~g~I~~~e~~~~l~~ 106 (141)
..-.|.+++|-|+.+||..+++.
T Consensus 148 IeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 148 IEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHhcccccccccHHHHHHHHhc
Confidence 99999999999999999988764
No 55
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.16 E-value=1.4e-09 Score=84.38 Aligned_cols=131 Identities=17% Similarity=0.438 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCC-------CHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC--C
Q 037913 2 KEKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGEL-------SLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS--G 72 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~--~ 72 (141)
++...++.-+|..||++.+|.++.++|..+|+.+|+.+ +.++++.++...|++.+|.|+..+|+.+|..+ .
T Consensus 2249 Ee~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETe 2328 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETE 2328 (2399)
T ss_pred HHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccc
Confidence 45778899999999999999999999999999999876 34589999999999999999999999999875 4
Q ss_pred cchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh----CcC----CCCcccHHHHHhhh
Q 037913 73 EEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYF----DLN----GDGVLNFDEFRIMM 140 (141)
Q Consensus 73 ~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~----d~~----~~g~i~~~ef~~~l 140 (141)
.....+.+..+|+.+|. +.-+|+..++... +++++++-++..+ ++. -.+.+.|.+|...+
T Consensus 2329 NI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2329 NILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 55556699999999998 7778998887643 4666666555554 332 23458999998754
No 56
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=99.12 E-value=7.4e-10 Score=71.39 Aligned_cols=138 Identities=22% Similarity=0.301 Sum_probs=92.0
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcch----
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAI---GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEE---- 75 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~---- 75 (141)
...+.+..+|.+.|.|.+|.|+..+++..+..- .+.-+..+.+.-|+..|.+++|+|+|+||..-+......+
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 346788999999999999999999999977653 2223445556677888999999999999976544311000
Q ss_pred --------------------------------------------------------HHHHHHHHHHHhhccCCCccCHHH
Q 037913 76 --------------------------------------------------------KMNDLKEAFKMYEMDGCGCITPKS 99 (141)
Q Consensus 76 --------------------------------------------------------~~~~~~~~f~~~D~~~~g~I~~~e 99 (141)
-..-+..+...+|++++..+|..|
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 011345556777888888888888
Q ss_pred HHHHHHH-----hCCCCCHHH----HHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 100 LKRMLSR-----LGQSKSDDE----CKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 100 ~~~~l~~-----~~~~~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
|....-. .|.++..-. ...+=..+|.|.+|.+|+++...++
T Consensus 258 FislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 258 FISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred hhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence 7754321 133333322 2344555677888888888776653
No 57
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.11 E-value=6.5e-10 Score=62.05 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=60.2
Q ss_pred ChhHHHHHHHHHhhhCCC--CCCccCHHHHHHHHH-HhCCCCC----HHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 1 MKEKHQQYERVFNHFDSN--GDRRISPSELQQCVE-AIGGELS----LAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 1 ~~~~~~~~~~~f~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
+++.+..+..+|+.|+.. ++|.|+.++|..++. .++..++ ..++..++..+|.+++|.|+|++|+.++..
T Consensus 3 ~e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 3 LEKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 356788899999999865 589999999999997 4455455 899999999999999999999999998874
No 58
>PF14658 EF-hand_9: EF-hand domain
Probab=99.10 E-value=7.5e-10 Score=57.44 Aligned_cols=61 Identities=26% Similarity=0.519 Sum_probs=56.8
Q ss_pred HHHhhhCCCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCC-CcccHHHHHHHHhc
Q 037913 10 RVFNHFDSNGDRRISPSELQQCVEAIGG-ELSLAEAEAAVEFLDADGD-GLLGFDDFVRLVEG 70 (141)
Q Consensus 10 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-~~i~~~ef~~~~~~ 70 (141)
..|..||+++.|.|...++..+|+.++. .+.+.+++.+...+|.++. |.|++++|...|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999988 8999999999999999988 99999999998863
No 59
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.09 E-value=8.3e-10 Score=61.64 Aligned_cols=65 Identities=20% Similarity=0.410 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhcc--CCCccCHHHHHHHHH-HhCCCCC----HHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 76 KMNDLKEAFKMYEMD--GCGCITPKSLKRMLS-RLGQSKS----DDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 76 ~~~~~~~~f~~~D~~--~~g~I~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
....+...|..++.+ ++|.|+.+||+.++. .+|..++ +.++..++..+|.+++|.|+|++|+.++
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~ 77 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLV 77 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 345677889999866 489999999999997 4565566 8999999999999999999999999876
No 60
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.09 E-value=1.3e-09 Score=75.27 Aligned_cols=129 Identities=22% Similarity=0.307 Sum_probs=95.3
Q ss_pred HHHHHhhhCCCCCCccCHHHHHHHHHHh-CCCC--CHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHH
Q 037913 8 YERVFNHFDSNGDRRISPSELQQCVEAI-GGEL--SLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAF 84 (141)
Q Consensus 8 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~--~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f 84 (141)
+.--|..+|+..+|.|+..+|..++-.. +.+. -...++++-+.+... ...|++.||.+++.-..... .+..+.
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~---dfd~Al 395 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLN---DFDIAL 395 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhh---HHHHHH
Confidence 3445788888888999999998876655 3322 223567777777655 55799999988876533333 334444
Q ss_pred HHhhccCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhhC
Q 037913 85 KMYEMDGCGCITPKSLKRMLSRL-GQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMMS 141 (141)
Q Consensus 85 ~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 141 (141)
..| ....+.|+..+|+++.... |.++++..++.+|.-+|.|+||.++.+||+..|+
T Consensus 396 ~fy-~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk 452 (489)
T KOG2643|consen 396 RFY-HMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMK 452 (489)
T ss_pred HHH-HHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHH
Confidence 444 2345789999999988765 8999988889999999999999999999999874
No 61
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.02 E-value=4.4e-09 Score=61.43 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHH
Q 037913 40 SLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRML 104 (141)
Q Consensus 40 ~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l 104 (141)
....+.-.|..+|.+++|.|+.+|+..+.. ......+..+|..+|.|++|.||.+||..++
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l----~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIRL----DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHc----cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 445556666677777777777777666541 1234455667777777777777777777766
No 62
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.97 E-value=2e-08 Score=69.51 Aligned_cols=128 Identities=19% Similarity=0.372 Sum_probs=92.0
Q ss_pred HHHHHhhhCCCCCCccCHHHHHHHHHHh------CC----------CCCHHHHH-HHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 8 YERVFNHFDSNGDRRISPSELQQCVEAI------GG----------ELSLAEAE-AAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 8 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~------~~----------~~~~~~~~-~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
+.-.|..||.|+||.|+.+||....... +. ........ .+..-+..++++.+++++|+.++..
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 4456889999999999999999876543 11 11111112 2344568899999999999999985
Q ss_pred CCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhC-CCCCHH--HHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 71 SGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLG-QSKSDD--ECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 71 ~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~-~~~~~~--~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
...+-+.--|..+|...+|.|+..+|..++-.+. .+.... ....+-+.+... +-.||++||.++.
T Consensus 315 ----Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff 382 (489)
T KOG2643|consen 315 ----LQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFF 382 (489)
T ss_pred ----HHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHH
Confidence 4455666779999999999999999999987763 332222 235566666554 5579999998875
No 63
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.92 E-value=3e-08 Score=55.05 Aligned_cols=69 Identities=20% Similarity=0.374 Sum_probs=58.6
Q ss_pred ChhHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 1 MKEKHQQYERVFNHFDSNGDRRISPSELQQCVEAI-----GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 1 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
++..+..+..+|+.|. .+.+.++..||+.++..- ...-.+..+..++..+|.+++|.|+|.||+.++..
T Consensus 3 LE~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 3 LEHSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3567888999999997 456799999999998652 33456889999999999999999999999999875
No 64
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.90 E-value=1.1e-08 Score=64.05 Aligned_cols=65 Identities=35% Similarity=0.555 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 76 KMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
....+..+|+.+|.+.||+|+..|++.++..+|.+-+---+..+++..|.|.+|+|||.+|+-++
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIf 161 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIF 161 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 45678889999999999999999999999999988887778999999999999999999998664
No 65
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.89 E-value=6.6e-08 Score=66.67 Aligned_cols=97 Identities=19% Similarity=0.269 Sum_probs=80.6
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHH
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFK 85 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~ 85 (141)
+....+|..+|.|.+|.++.++|...+.. .+.++-++|..+|.+.+|.|+.+|..+.+......-..+++..+|.
T Consensus 51 ~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e 125 (463)
T KOG0036|consen 51 EAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFE 125 (463)
T ss_pred HHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHH
Confidence 44567888899999999999999988775 5677788899999999999999998888877655556677888999
Q ss_pred HhhccCCCccCHHHHHHHHHHh
Q 037913 86 MYEMDGCGCITPKSLKRMLSRL 107 (141)
Q Consensus 86 ~~D~~~~g~I~~~e~~~~l~~~ 107 (141)
..|++++++|+.+|++..+.-.
T Consensus 126 ~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 126 HMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred HhccCCCeeeccHHHHhhhhcC
Confidence 9999999999999999887644
No 66
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.89 E-value=3.7e-08 Score=61.68 Aligned_cols=102 Identities=21% Similarity=0.340 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC--CcchHHHH
Q 037913 2 KEKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS--GEEEKMND 79 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~--~~~~~~~~ 79 (141)
.++++..+.+|..||.+.||+|+..|++.++..+|.+.+.--++.++...|.+.+|+|+|.+|+-.+..- ..-.....
T Consensus 95 rkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~ 174 (244)
T KOG0041|consen 95 RKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSG 174 (244)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchH
Confidence 3678899999999999999999999999999999999999999999999999999999999999887652 11111222
Q ss_pred HHHH--HHHhhccCCCccCHHHHHHH
Q 037913 80 LKEA--FKMYEMDGCGCITPKSLKRM 103 (141)
Q Consensus 80 ~~~~--f~~~D~~~~g~I~~~e~~~~ 103 (141)
+..+ ....|....|+-....|-.+
T Consensus 175 ~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 175 LLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred HHHHHHhcccchhhhhhhhHHHHHHH
Confidence 3333 33478888888877776654
No 67
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.85 E-value=1.8e-08 Score=70.92 Aligned_cols=127 Identities=13% Similarity=0.158 Sum_probs=76.7
Q ss_pred HHHHhhhCCCCCCccCHHHHHHHHHHhCCC---CCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHH
Q 037913 9 ERVFNHFDSNGDRRISPSELQQCVEAIGGE---LSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFK 85 (141)
Q Consensus 9 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~ 85 (141)
..+|..||+.++|.+|.+++..++.+.... +...+..-+-..+.......++|.+|.+++.. -..+...++|+
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~----~~~E~~~qafr 186 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHE----FQLEHAEQAFR 186 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHH----HHHHHHHHHHH
Confidence 344555555555555555555555544211 11111111222232333344555555555543 24456788999
Q ss_pred HhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC-cCCCCcccHHHHHhh
Q 037913 86 MYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFD-LNGDGVLNFDEFRIM 139 (141)
Q Consensus 86 ~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-~~~~g~i~~~ef~~~ 139 (141)
..|+.++|.||.-+++.++.....++..+.++..+.... .+...++|+..|..+
T Consensus 187 ~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~af 241 (694)
T KOG0751|consen 187 EKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAF 241 (694)
T ss_pred HhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHH
Confidence 999999999999999999988888887777876665554 444456888777543
No 68
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.84 E-value=2.7e-08 Score=59.78 Aligned_cols=60 Identities=33% Similarity=0.579 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhh
Q 037913 76 KMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIM 139 (141)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 139 (141)
..++++++|...|+|++|.|..++++..+..+|-..++++++.++... .|.|+|--|+.+
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTm 89 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTM 89 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHH
Confidence 456778888888888888888888888888877777777777776554 455666666554
No 69
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.80 E-value=2.6e-08 Score=58.83 Aligned_cols=67 Identities=27% Similarity=0.449 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcC--CCCcccHHHHHhhh
Q 037913 74 EEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLN--GDGVLNFDEFRIMM 140 (141)
Q Consensus 74 ~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~l 140 (141)
+...++++.+|..||..++|.|+..+.-.+|+++|.+++++++.+.+..+..+ +-.+|+|++|+-++
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~ 75 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMY 75 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHH
Confidence 44557899999999999999999999999999999999999999999998877 44678998887654
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.78 E-value=1.4e-07 Score=52.34 Aligned_cols=63 Identities=13% Similarity=0.302 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhccCCCccCHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 77 MNDLKEAFKMYEMDGCGCITPKSLKRMLSRL-----GQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 77 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
...+-.+|..|. .+.++++..||+..+..- +..-++..++.+++.+|.|+||.|+|+||..++
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv 74 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLI 74 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 445777888887 445799999999998652 444578889999999999999999999999875
No 71
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.76 E-value=1.3e-08 Score=44.63 Aligned_cols=27 Identities=41% Similarity=0.695 Sum_probs=19.9
Q ss_pred HHHHHHHhhccCCCccCHHHHHHHHHH
Q 037913 80 LKEAFKMYEMDGCGCITPKSLKRMLSR 106 (141)
Q Consensus 80 ~~~~f~~~D~~~~g~I~~~e~~~~l~~ 106 (141)
++.+|+.+|.|++|.|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567777777777777777777777654
No 72
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.76 E-value=1.5e-08 Score=44.37 Aligned_cols=29 Identities=24% Similarity=0.599 Sum_probs=23.3
Q ss_pred HHHHHHhhhCCCCCCccCHHHHHHHHHHh
Q 037913 7 QYERVFNHFDSNGDRRISPSELQQCVEAI 35 (141)
Q Consensus 7 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 35 (141)
++.++|+.+|+|++|+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 36778888888888888888888887653
No 73
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.70 E-value=9.1e-07 Score=65.32 Aligned_cols=133 Identities=19% Similarity=0.299 Sum_probs=112.0
Q ss_pred HHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHH
Q 037913 4 KHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEA 83 (141)
Q Consensus 4 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 83 (141)
....|..+|+..|++.+|.++..+...++..+...+....+..++...+....+.+...+|..+........ ++...
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~ 210 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFL 210 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHH
Confidence 456788999999999999999999999999999999999999999999888999999999999987654433 57777
Q ss_pred HHHhhccCCCccCHHHHHHHHHHhC--CCCCHHHHHHHHHhhCcCC----CCcccHHHHHhhh
Q 037913 84 FKMYEMDGCGCITPKSLKRMLSRLG--QSKSDDECKSMIAYFDLNG----DGVLNFDEFRIMM 140 (141)
Q Consensus 84 f~~~D~~~~g~I~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~----~g~i~~~ef~~~l 140 (141)
|..+-.+ .+.++..++..++.... ...+...+..+++.+.... .+.++++.|..+|
T Consensus 211 f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL 272 (746)
T KOG0169|consen 211 FVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYL 272 (746)
T ss_pred HHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHh
Confidence 7777544 89999999999998873 4467888889998886543 4569999999886
No 74
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.64 E-value=4.9e-08 Score=43.56 Aligned_cols=30 Identities=47% Similarity=0.795 Sum_probs=25.6
Q ss_pred HHHHHHHHhhccCCCccCHHHHHHHHH-HhC
Q 037913 79 DLKEAFKMYEMDGCGCITPKSLKRMLS-RLG 108 (141)
Q Consensus 79 ~~~~~f~~~D~~~~g~I~~~e~~~~l~-~~~ 108 (141)
+++.+|+.+|.+++|.|+.+||+.+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 554
No 75
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.61 E-value=7.5e-08 Score=42.96 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=25.7
Q ss_pred HHHHHHhhhCCCCCCccCHHHHHHHHH-HhC
Q 037913 7 QYERVFNHFDSNGDRRISPSELQQCVE-AIG 36 (141)
Q Consensus 7 ~~~~~f~~~d~~~~g~i~~~e~~~~l~-~~~ 36 (141)
+++.+|..+|++++|.|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 554
No 76
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.55 E-value=5.2e-07 Score=63.02 Aligned_cols=65 Identities=22% Similarity=0.369 Sum_probs=51.1
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCVEAI----GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
..+..+|+..|.|++|.|+.+||.++...+ ....+.+++..+.+.+|-+++|.|++.||+..+..
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 456778888888888888888888876665 45577788888888888888888888888877653
No 77
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.50 E-value=5.3e-06 Score=58.91 Aligned_cols=100 Identities=14% Similarity=0.309 Sum_probs=74.3
Q ss_pred HHHHHHH---hhhCCCCCCccCHHHHHHH-HHHhCCCCCHHHHHHHHH-HhCCCCCCcccHHHHHHHHhcCCcchHHHHH
Q 037913 6 QQYERVF---NHFDSNGDRRISPSELQQC-VEAIGGELSLAEAEAAVE-FLDADGDGLLGFDDFVRLVEGSGEEEKMNDL 80 (141)
Q Consensus 6 ~~~~~~f---~~~d~~~~g~i~~~e~~~~-l~~~~~~~~~~~~~~l~~-~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 80 (141)
+++..+| ...+.++..+++.++|... +...+-+...+++.++.. ..|..++|-|+|+||..+=.-.+.++ ...
T Consensus 33 ~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pD--al~ 110 (694)
T KOG0751|consen 33 KELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPD--ALF 110 (694)
T ss_pred HHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCch--HHH
Confidence 3444444 4556788899999999875 333344444555555554 44677899999999998766555554 467
Q ss_pred HHHHHHhhccCCCccCHHHHHHHHHHh
Q 037913 81 KEAFKMYEMDGCGCITPKSLKRMLSRL 107 (141)
Q Consensus 81 ~~~f~~~D~~~~g~I~~~e~~~~l~~~ 107 (141)
..+|..+|..++|.+|.+++..++...
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhcc
Confidence 889999999999999999999999875
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.45 E-value=1.9e-06 Score=49.41 Aligned_cols=65 Identities=26% Similarity=0.452 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
++...+..+|...++ ++|.|+..+...++...+ ++.+.+..++...|.+++|.++++||+..+..
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 577889999999985 689999999999888776 67899999999999999999999999987763
No 79
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.44 E-value=1.5e-06 Score=60.97 Aligned_cols=53 Identities=28% Similarity=0.495 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhhC
Q 037913 76 KMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMMS 141 (141)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 141 (141)
....+..+|+.+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...++
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 445788999999999999999999842 57899999999999999999998763
No 80
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.42 E-value=1.5e-06 Score=42.74 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=40.0
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 22 RISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 22 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
.++.+|++.+|+.+++.++...+..+|..+|++++|.+.-+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 3788999999999999999999999999999999999999999988763
No 81
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.39 E-value=4.7e-06 Score=49.93 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=72.9
Q ss_pred HHHHhhhCCCCCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC-Ccch----HHHHHHH
Q 037913 9 ERVFNHFDSNGDRRISPSELQQCVEAIGGE-LSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS-GEEE----KMNDLKE 82 (141)
Q Consensus 9 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-~~~~----~~~~~~~ 82 (141)
+++...|..||.|.++..+|..++.-+.-. +-.-.+...|..+|-++++.|.-.+....+... .... ...-..+
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 356677888999999999999988776322 223344566788899999999988888777653 1112 2223445
Q ss_pred HHHHhhccCCCccCHHHHHHHHHHh
Q 037913 83 AFKMYEMDGCGCITPKSLKRMLSRL 107 (141)
Q Consensus 83 ~f~~~D~~~~g~I~~~e~~~~l~~~ 107 (141)
+....|.+++|.++..||+.++.+.
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhC
Confidence 6677799999999999999988764
No 82
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.35 E-value=5.8e-07 Score=37.92 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=15.9
Q ss_pred HHHHHHhhccCCCccCHHHHHHH
Q 037913 81 KEAFKMYEMDGCGCITPKSLKRM 103 (141)
Q Consensus 81 ~~~f~~~D~~~~g~I~~~e~~~~ 103 (141)
+.+|..+|.|++|.||.+|+.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777664
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.35 E-value=1.3e-06 Score=42.87 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=36.1
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 95 ITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 95 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
++..|++.+|+.+++.+++..+..+|+.+|.+++|.+.-+||..++
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 5788999999999999999999999999999999999988887765
No 84
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.34 E-value=3.5e-06 Score=48.32 Aligned_cols=65 Identities=23% Similarity=0.406 Sum_probs=53.4
Q ss_pred cchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 73 EEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 73 ~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
..........+|...+. ++|.|+.++...++...| ++.+.+..++...|.+++|+++++||.-+|
T Consensus 5 s~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 34556778888998875 679999999999988765 577888999999999999999999998765
No 85
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.31 E-value=7.1e-06 Score=57.61 Aligned_cols=58 Identities=26% Similarity=0.494 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHH
Q 037913 36 GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSR 106 (141)
Q Consensus 36 ~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~ 106 (141)
|.......+..+|..+|.+++|.|+.+||+. ...+|..+|.|++|.|+.+||..++..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 6677788899999999999999999999952 467899999999999999999998865
No 86
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.30 E-value=8.6e-07 Score=51.69 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=49.6
Q ss_pred CCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHh
Q 037913 71 SGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRI 138 (141)
Q Consensus 71 ~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 138 (141)
.........+...|..+|.|+||.++..|+..+...+ ...+..+..++...|.|++|.||+.|+..
T Consensus 47 ~~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 47 SSYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HTGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred cchhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3445567788999999999999999999999876644 44566689999999999999999999875
No 87
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.28 E-value=1.2e-06 Score=36.88 Aligned_cols=24 Identities=38% Similarity=0.684 Sum_probs=18.9
Q ss_pred HHHHHhhhCCCCCCccCHHHHHHH
Q 037913 8 YERVFNHFDSNGDRRISPSELQQC 31 (141)
Q Consensus 8 ~~~~f~~~d~~~~g~i~~~e~~~~ 31 (141)
++..|+.+|.|++|.|+.+|+..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456788888888888888888764
No 88
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.25 E-value=4.1e-06 Score=66.10 Aligned_cols=65 Identities=20% Similarity=0.455 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCC-------CHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 76 KMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSK-------SDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
...++..+|+.||.+++|.++..+|+.+|+.+|+++ +++.+..++...|++.+|+|+..+|..+|
T Consensus 2251 ~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2251 QLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred HHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 344778889999999999999999999999998776 23478999999999999999999999887
No 89
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.18 E-value=2.9e-06 Score=57.18 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=77.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhcC-CcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 037913 42 AEAEAAVEFLDADGDGLLGFDDFVRLVEGS-GEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMI 120 (141)
Q Consensus 42 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 120 (141)
+.+..+|..||.+++|.++|.+.+..+.-. ..+....-++.+|+.|+.+.||.+...+|.-+|+..- .+..-.+--++
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-Ccceeeccccc
Confidence 556778889999999999999988877665 3445567789999999999999999999888887742 12223345678
Q ss_pred HhhCcCCCCcccHHHHHhhh
Q 037913 121 AYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 121 ~~~d~~~~g~i~~~ef~~~l 140 (141)
...+...+|+|++.+|..++
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFA 357 (412)
T ss_pred hhhhcccCcceeHHHHHHHH
Confidence 88888889999999998764
No 90
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=98.11 E-value=9e-05 Score=45.87 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=80.0
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCC---CCCCcccHHHH---HHHHhc---------
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDA---DGDGLLGFDDF---VRLVEG--------- 70 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~---~~~~~i~~~ef---~~~~~~--------- 70 (141)
..|++=...||+|+||.|.+-|-...++.+|+.+....+-.++-.... ...+.+.---| +..+..
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 456777788999999999999999999999988665554443322211 01111111101 000000
Q ss_pred --CCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCC-----CHHHHH-HHHHhhCcCCCCcccHHHHHh
Q 037913 71 --SGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSK-----SDDECK-SMIAYFDLNGDGVLNFDEFRI 138 (141)
Q Consensus 71 --~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~-----~~~~~~-~~~~~~d~~~~g~i~~~ef~~ 138 (141)
....-..+.+..+|..++..+.+.+|..|+..+++.-.... ....++ .++-.+-.+++|.+..++-..
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~ 162 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRG 162 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhh
Confidence 12222467889999999988889999999999998742211 122222 112222356788888776544
No 91
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.94 E-value=0.00016 Score=51.10 Aligned_cols=129 Identities=21% Similarity=0.305 Sum_probs=94.2
Q ss_pred HHHHHHhhhCCCCCCccCHHHHHHH--HHHh------------CCCCCHHHHHHH---HHHhCCCCCCcccHHHHHHHHh
Q 037913 7 QYERVFNHFDSNGDRRISPSELQQC--VEAI------------GGELSLAEAEAA---VEFLDADGDGLLGFDDFVRLVE 69 (141)
Q Consensus 7 ~~~~~f~~~d~~~~g~i~~~e~~~~--l~~~------------~~~~~~~~~~~l---~~~~d~~~~~~i~~~ef~~~~~ 69 (141)
.++++|-.+++.+.|.|+.+++... +..+ .--.+.+....+ +..+|++.+|-|+-++......
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 4678899999999999999887652 2222 111333444455 5677888999999998777665
Q ss_pred cCCcchHHHHHHHHHH----HhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHh
Q 037913 70 GSGEEEKMNDLKEAFK----MYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRI 138 (141)
Q Consensus 70 ~~~~~~~~~~~~~~f~----~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 138 (141)
... ..--+.++|. ..-...+|.++.++|..++-+....-+++.++.+|+-+|.+++|.++-.+..-
T Consensus 306 ~tl---t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~ 375 (493)
T KOG2562|consen 306 HTL---TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRY 375 (493)
T ss_pred cch---hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHH
Confidence 421 2345677787 33345689999999999988887777888899999999999999998877543
No 92
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00043 Score=52.02 Aligned_cols=132 Identities=18% Similarity=0.291 Sum_probs=99.4
Q ss_pred HHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc------------C
Q 037913 4 KHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG------------S 71 (141)
Q Consensus 4 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~------------~ 71 (141)
+...-...|..+ +-+.|+|+-.+-+.++-..+ ++...+-.++...|.+.+|+++..||.-.|.. .
T Consensus 14 Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP~~ 90 (1118)
T KOG1029|consen 14 ERQKHDAQFGQL-KPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLPPV 90 (1118)
T ss_pred HHHHHHHHHhcc-CCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCCCC
Confidence 334445556665 34688888888888776655 56777888888888889999999988655432 0
Q ss_pred Ccch----------------------------------------------------------------------------
Q 037913 72 GEEE---------------------------------------------------------------------------- 75 (141)
Q Consensus 72 ~~~~---------------------------------------------------------------------------- 75 (141)
..++
T Consensus 91 LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ss 170 (1118)
T KOG1029|consen 91 LPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHDSS 170 (1118)
T ss_pred CChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Confidence 0000
Q ss_pred ----------------------HHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccH
Q 037913 76 ----------------------KMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNF 133 (141)
Q Consensus 76 ----------------------~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~ 133 (141)
..-+.+..|..+|+..+|.+|-..-+.+|...+ ++.-.+..+....|.|+||+++-
T Consensus 171 ~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~ 248 (1118)
T KOG1029|consen 171 VSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSA 248 (1118)
T ss_pred hhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccH
Confidence 111678899999999999999999999997765 46777889999999999999999
Q ss_pred HHHHhhh
Q 037913 134 DEFRIMM 140 (141)
Q Consensus 134 ~ef~~~l 140 (141)
+||.-.|
T Consensus 249 dEfilam 255 (1118)
T KOG1029|consen 249 DEFILAM 255 (1118)
T ss_pred HHHHHHH
Confidence 9998654
No 93
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.89 E-value=9.5e-05 Score=53.04 Aligned_cols=67 Identities=21% Similarity=0.337 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCC---CHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGEL---SLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
++...+.+.|...| +++|+++..++..++...+... ..++++.++...+.+.+|.|+|++|+..+..
T Consensus 16 ~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 16 EELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 57889999999999 9999999999999999986543 5789999999999999999999999997665
No 94
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.88 E-value=1.2e-05 Score=52.44 Aligned_cols=64 Identities=20% Similarity=0.367 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhhccCCCccCHHHHHHHHHHh-CCCC--CHHHHHHHHHhhCcCCCCcccHHHHHh
Q 037913 75 EKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL-GQSK--SDDECKSMIAYFDLNGDGVLNFDEFRI 138 (141)
Q Consensus 75 ~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~ 138 (141)
.....+..+|...|.+.+|.||..|+++.+..- ..++ +..+-...|...|+|++|+|++++|.-
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 455678899999999999999999999876542 2222 223345678888999999999999864
No 95
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.86 E-value=0.00017 Score=52.52 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=91.3
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHH-HHHhCCCCCHHHHHHHHHHhCCC-----CCCcccHHHHHHHHhc------
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQC-VEAIGGELSLAEAEAAVEFLDAD-----GDGLLGFDDFVRLVEG------ 70 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~-l~~~~~~~~~~~~~~l~~~~d~~-----~~~~i~~~ef~~~~~~------ 70 (141)
..+..|.++|...|.|.+|.++-.|+-.. ..+++.++...++..+-...+.. .+..+....|+-+...
T Consensus 192 ~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr 271 (625)
T KOG1707|consen 192 RCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGR 271 (625)
T ss_pred HHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcc
Confidence 46788999999999999999999998875 55568888887776665544322 2344566666655321
Q ss_pred ------------------------------------CCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCC-C-
Q 037913 71 ------------------------------------SGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSK-S- 112 (141)
Q Consensus 71 ------------------------------------~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~-~- 112 (141)
.....-.+.+..+|..+|.|+||.++-.|+...+...+..+ .
T Consensus 272 ~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~ 351 (625)
T KOG1707|consen 272 HETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTS 351 (625)
T ss_pred ccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCC
Confidence 01111234688899999999999999999999999875332 1
Q ss_pred HHHHHHHHHhhCcCCCCcccHHHHHhh
Q 037913 113 DDECKSMIAYFDLNGDGVLNFDEFRIM 139 (141)
Q Consensus 113 ~~~~~~~~~~~d~~~~g~i~~~ef~~~ 139 (141)
.... .....+..|.++|+.|+..
T Consensus 352 ~~~~----~~t~~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 352 SPYK----DSTVKNERGWLTLNGFLSQ 374 (625)
T ss_pred Cccc----ccceecccceeehhhHHHH
Confidence 0100 1112346788999888764
No 96
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.84 E-value=0.0001 Score=52.89 Aligned_cols=65 Identities=25% Similarity=0.440 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCC---CHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 75 EKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSK---SDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 75 ~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~---~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
.....++..|...| +++|+|+..++..++...+... ..++++.++...+.|.+|+|+|++|+.++
T Consensus 16 ~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 16 EELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred HHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHH
Confidence 34557888899999 9999999999999999876443 57889999999999999999999998753
No 97
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.76 E-value=0.00011 Score=49.75 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=81.4
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHH
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCVEAI-GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAF 84 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f 84 (141)
..+...|..||.+++|.++..+....+.-+ +...+..-++..|..|+...+|.+.-.+|.-.+....... .-.+...|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~-~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE-VLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc-eeeccccc
Confidence 457788999999999999988877766655 6667888889999999999999999877766665422222 12456789
Q ss_pred HHhhccCCCccCHHHHHHHHHHhC
Q 037913 85 KMYEMDGCGCITPKSLKRMLSRLG 108 (141)
Q Consensus 85 ~~~D~~~~g~I~~~e~~~~l~~~~ 108 (141)
...++..+|.|+.++|+.+....+
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred hhhhcccCcceeHHHHHHHHHhCc
Confidence 999999999999999999887653
No 98
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.74 E-value=9.5e-05 Score=40.68 Aligned_cols=61 Identities=23% Similarity=0.526 Sum_probs=46.5
Q ss_pred HHHHHHHHhhccCCCccCHHHHHHHHHHh-CC-CCCHHHHHHHHHhhCcC----CCCcccHHHHHhhh
Q 037913 79 DLKEAFKMYEMDGCGCITPKSLKRMLSRL-GQ-SKSDDECKSMIAYFDLN----GDGVLNFDEFRIMM 140 (141)
Q Consensus 79 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l 140 (141)
++..+|..+-. +.+.||.++|+.+|... +. ..+.+.+..++..+.++ ..+.+|+++|..+|
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 35677888854 77888899998888764 43 46788888888888655 36889999998876
No 99
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.73 E-value=1.5e-05 Score=46.46 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHH
Q 037913 36 GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKR 102 (141)
Q Consensus 36 ~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~ 102 (141)
....-...+.-.|..+|.+++|.++..|+..+.... ...+.-++..++..|.|+||.||..|+..
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 334456667777888888888888888877665532 22333567788888888888888888764
No 100
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0002 Score=41.27 Aligned_cols=59 Identities=25% Similarity=0.450 Sum_probs=45.2
Q ss_pred HHHHHhhccCCCccCHHHHHHHHHHh------CC---C-CCHHHHHH----HHHhhCcCCCCcccHHHHHhhh
Q 037913 82 EAFKMYEMDGCGCITPKSLKRMLSRL------GQ---S-KSDDECKS----MIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 82 ~~f~~~D~~~~g~I~~~e~~~~l~~~------~~---~-~~~~~~~~----~~~~~d~~~~g~i~~~ef~~~l 140 (141)
-.|.++|.|++|.++--|+..++.-. |. + .++.++.. +++.-|.|++|.|+|-||+...
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 45899999999999999999988643 22 2 24555544 5556688999999999998754
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.52 E-value=0.00015 Score=30.64 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=20.5
Q ss_pred HHHHHhhhCCCCCCccCHHHHHHHHHH
Q 037913 8 YERVFNHFDSNGDRRISPSELQQCVEA 34 (141)
Q Consensus 8 ~~~~f~~~d~~~~g~i~~~e~~~~l~~ 34 (141)
+..+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 556788888888888888888777654
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.48 E-value=0.00018 Score=30.35 Aligned_cols=26 Identities=42% Similarity=0.736 Sum_probs=15.9
Q ss_pred HHHHHHHhhccCCCccCHHHHHHHHH
Q 037913 80 LKEAFKMYEMDGCGCITPKSLKRMLS 105 (141)
Q Consensus 80 ~~~~f~~~D~~~~g~I~~~e~~~~l~ 105 (141)
++.+|..+|.+++|.|+..+|..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34556666666666666666666554
No 103
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.39 E-value=0.00071 Score=37.16 Aligned_cols=63 Identities=22% Similarity=0.454 Sum_probs=48.3
Q ss_pred HHHHHhhhCCCCCCccCHHHHHHHHHHhCCC--CCHHHHHHHHHHhCCC----CCCcccHHHHHHHHhcC
Q 037913 8 YERVFNHFDSNGDRRISPSELQQCVEAIGGE--LSLAEAEAAVEFLDAD----GDGLLGFDDFVRLVEGS 71 (141)
Q Consensus 8 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~l~~~~d~~----~~~~i~~~ef~~~~~~~ 71 (141)
+..+|..+-. +.+.|+.++|...|+.-... .+...+..++..+..+ ..+.+++.+|..+|.+.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 5678888854 78889999999988877433 5788888888887544 36788899998888763
No 104
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.81 E-value=0.016 Score=32.30 Aligned_cols=62 Identities=15% Similarity=0.276 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhccCCCccCHHHHHHHHHHh-------CC----CCCHHHHHHHHHhhCcCCCCcccHHHHHhhhC
Q 037913 77 MNDLKEAFKMYEMDGCGCITPKSLKRMLSRL-------GQ----SKSDDECKSMIAYFDLNGDGVLNFDEFRIMMS 141 (141)
Q Consensus 77 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 141 (141)
.++++.+|+.+ .|++|.++...|...|... |+ ...+..++.+|... .....|+.++|+++|+
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 36788999998 6889999999999988653 21 12677788888776 2466899999999873
No 105
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.80 E-value=0.016 Score=44.77 Aligned_cols=99 Identities=18% Similarity=0.128 Sum_probs=78.1
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCH-----HHHHHHHHHhCCCCCCcccHHHHHHHHhcC-CcchH
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSL-----AEAEAAVEFLDADGDGLLGFDDFVRLVEGS-GEEEK 76 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-~~~~~ 76 (141)
....+++..|+.+++...|.++..++..++-.+|...-. .++..+....+....|.+++.+|...+... .....
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~ 823 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDT 823 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcH
Confidence 356788999999999999999999999999999988664 344455555566666899999999999875 45556
Q ss_pred HHHHHHHHHHhhccCCCccCHHHHHH
Q 037913 77 MNDLKEAFKMYEMDGCGCITPKSLKR 102 (141)
Q Consensus 77 ~~~~~~~f~~~D~~~~g~I~~~e~~~ 102 (141)
...+..+|..+-.++. .|..+|+..
T Consensus 824 ~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 824 ELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 6677888888876665 788888776
No 106
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.75 E-value=0.0051 Score=42.33 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=72.9
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHH
Q 037913 5 HQQYERVFNHFDSNGDRRISPSELQQCVEAI---GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLK 81 (141)
Q Consensus 5 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 81 (141)
-.+|...|..+-.+.++......+..+-+.+ -.+.-...+.=||..+|.+.++.++..|....-.. ..+.-++
T Consensus 210 g~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~Cik 285 (434)
T KOG3555|consen 210 GNRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIK 285 (434)
T ss_pred HHHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHH
Confidence 3466777777666666666555554443322 22345677788899999999999999988776653 4556788
Q ss_pred HHHHHhhccCCCccCHHHHHHHHHHhC
Q 037913 82 EAFKMYEMDGCGCITPKSLKRMLSRLG 108 (141)
Q Consensus 82 ~~f~~~D~~~~g~I~~~e~~~~l~~~~ 108 (141)
..|...|...+|.|+..|....+...+
T Consensus 286 pFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 286 PFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred HHHhhhcccccCccccchhhhhhccCC
Confidence 899999999999999999998887765
No 107
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.019 Score=33.35 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=36.8
Q ss_pred HHHHhhhCCCCCCccCHHHHHHHHHHhC------C----CCCHHHHHHHHH----HhCCCCCCcccHHHHHH
Q 037913 9 ERVFNHFDSNGDRRISPSELQQCVEAIG------G----ELSLAEAEAAVE----FLDADGDGLLGFDDFVR 66 (141)
Q Consensus 9 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~------~----~~~~~~~~~l~~----~~d~~~~~~i~~~ef~~ 66 (141)
..+|...|-|+++.++--|+..++.... . -+++.++..+.. .-|-+++|.|+|-||+.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 3567888888999999888888877652 1 123444444433 33555666677766654
No 108
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0078 Score=43.47 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 76 KMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
.++.+...|+.+..|..|+|+-.--++++.+- .+.-.++..+++..|.+.||.+++.||+.+|
T Consensus 229 QReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 229 QREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 45667788999999999999999999998864 4678889999999999999999999999875
No 109
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.55 E-value=0.044 Score=41.60 Aligned_cols=97 Identities=12% Similarity=0.197 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHH
Q 037913 40 SLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSM 119 (141)
Q Consensus 40 ~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~ 119 (141)
....+..++...|.+.+|.+++.+-..++......-....++..|+..+..++|.+...++.++....+..+ ++..+
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~ 210 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFL 210 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHH
Confidence 455678889999999999999999988887655455566788888888999999999999999988776543 56666
Q ss_pred HHhhCcCCCCcccHHHHHhhh
Q 037913 120 IAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 120 ~~~~d~~~~g~i~~~ef~~~l 140 (141)
+..+-.+ .+.++.+++..++
T Consensus 211 f~~~s~~-~~~ls~~~L~~Fl 230 (746)
T KOG0169|consen 211 FVQYSHG-KEYLSTDDLLRFL 230 (746)
T ss_pred HHHHhCC-CCccCHHHHHHHH
Confidence 6666544 6667776666554
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=96.38 E-value=0.064 Score=40.21 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=42.8
Q ss_pred CCcccHHHHHHHHhcC--CcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHh-CC-CCCHHHHHHHHHhh----C---
Q 037913 56 DGLLGFDDFVRLVEGS--GEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL-GQ-SKSDDECKSMIAYF----D--- 124 (141)
Q Consensus 56 ~~~i~~~ef~~~~~~~--~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~----d--- 124 (141)
.|.++|++|..+.... .......++..+|..+-. +.+.++.++|..+|... +. ..+.+.+..++..+ .
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 3566666665554432 112234566666666643 23567777777666654 22 23444444444332 1
Q ss_pred cCCCCcccHHHHHhhh
Q 037913 125 LNGDGVLNFDEFRIMM 140 (141)
Q Consensus 125 ~~~~g~i~~~ef~~~l 140 (141)
....+.++++.|..+|
T Consensus 93 ~~~~~~l~~~~F~~~l 108 (599)
T PLN02952 93 RYTRHGLNLDDFFHFL 108 (599)
T ss_pred cccccCcCHHHHHHHH
Confidence 1112346777776665
No 111
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.94 E-value=0.056 Score=33.40 Aligned_cols=52 Identities=10% Similarity=0.252 Sum_probs=30.8
Q ss_pred ccCCCccCHHHHHHHHHHhC---CCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 89 MDGCGCITPKSLKRMLSRLG---QSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 89 ~~~~g~I~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
..+...++...|..+|+..+ ..++...++.+|..+...+...|+|++|+.+|
T Consensus 13 ~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL 67 (154)
T PF05517_consen 13 KKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEAL 67 (154)
T ss_dssp TSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHH
Confidence 34445666777777776653 23566667777777655555557777776655
No 112
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.89 E-value=0.029 Score=41.41 Aligned_cols=68 Identities=10% Similarity=0.220 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
++.......|..+|.++.|+++..+....++..+...+.+.++.+.+..+.+.+|.+...+|.+++..
T Consensus 590 ~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 590 EDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 45667778999999999999999999999999888889999999999998888999999999998876
No 113
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.85 E-value=0.094 Score=32.42 Aligned_cols=62 Identities=16% Similarity=0.356 Sum_probs=47.9
Q ss_pred HHHHhhh---CCCCCCccCHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 9 ERVFNHF---DSNGDRRISPSELQQCVEAIGG---ELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 9 ~~~f~~~---d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
..+|..| -+.+...|+...|..+++.+++ .++...+..+|..+...+...|+|++|+.+|..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 3445554 3566778999999999999854 488999999999987777778999999998875
No 114
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.82 E-value=0.0035 Score=42.81 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCC-CHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 77 MNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSK-SDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 77 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
+..+...|..+|.|+++.|...|++.+=+-+-..- ...-.+.+++..|.|+|-.|+++|+...|
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 33566778888888888888888765543332222 23445788888888888888888887654
No 115
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.026 Score=43.09 Aligned_cols=63 Identities=24% Similarity=0.424 Sum_probs=54.0
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 037913 5 HQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVE 69 (141)
Q Consensus 5 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 69 (141)
...+.++|+.+|+..+|++|-.+-+.+|-..+ ++...+-.++..-|.+++|.++-+||+-.+.
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 45678999999999999999999999888766 5567777888888999999999999987654
No 116
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.57 E-value=0.031 Score=41.23 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhhC
Q 037913 76 KMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMMS 141 (141)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 141 (141)
.....+..|..+|.++.|.++..++..+++..+...+.+....++...+.+..|.+...+|.++++
T Consensus 591 ~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 591 DFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 344566779999999999999999999999998888999999999999999999999999998764
No 117
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.55 E-value=0.023 Score=42.34 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHH
Q 037913 40 SLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSL 100 (141)
Q Consensus 40 ~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~ 100 (141)
+.....++|+..|.+.+|.++|.+++..+.........+.+...|+.+|++++ ....++.
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 44556788888899999999999999888877777778888999999999888 8888877
No 118
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.50 E-value=0.029 Score=38.84 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 74 EEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 74 ~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
+.-...+..+|..+|.+.+|.++..|++.+-.. -.+.-++.+|...|.-.+|.|+-+||...+
T Consensus 246 p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 246 PICKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred cchhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhh
Confidence 345668999999999999999999999876543 367778999999999999999999886543
No 119
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.074 Score=38.73 Aligned_cols=66 Identities=23% Similarity=0.286 Sum_probs=55.0
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
++++.+...|+..-+|.+|.|+-..-+.++.... ++-.++..|++..|-+.+|-+++.||...+..
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 5677778889999999999999888777766544 56788899999999999999999999887654
No 120
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=95.27 E-value=0.007 Score=32.00 Aligned_cols=56 Identities=20% Similarity=0.396 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCC-------CCcccHHHHHhhh
Q 037913 77 MNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNG-------DGVLNFDEFRIMM 140 (141)
Q Consensus 77 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~-------~g~i~~~ef~~~l 140 (141)
.+.+..+|+.+ .++.++||..||++.|. +++++.++..+..-. .|..+|..|...|
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 46789999999 67779999999998863 333455555543322 3678999988654
No 121
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=95.12 E-value=0.024 Score=38.64 Aligned_cols=60 Identities=18% Similarity=0.356 Sum_probs=44.2
Q ss_pred HHHHHHHhhccCCCccCHHHHHHHHHHh----CCCCCH--------HH----HHHHHHhhCcCCCCcccHHHHHhh
Q 037913 80 LKEAFKMYEMDGCGCITPKSLKRMLSRL----GQSKSD--------DE----CKSMIAYFDLNGDGVLNFDEFRIM 139 (141)
Q Consensus 80 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~----~~~~~~--------~~----~~~~~~~~d~~~~g~i~~~ef~~~ 139 (141)
-+..|..+|.+++|+++..|+...+..- -.+-++ ++ -+.++...|.|++..||.++|++.
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 3456778899999999999999887542 111111 11 256888999999999999999863
No 122
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.05 E-value=0.051 Score=44.45 Aligned_cols=55 Identities=18% Similarity=0.415 Sum_probs=47.8
Q ss_pred HHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhh
Q 037913 84 FKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIM 139 (141)
Q Consensus 84 f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 139 (141)
|+.+|+|+.|.|+..+|+.++.... ..+..+++-++.-...+.....+|.+|+.-
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~r 4117 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDR 4117 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHH
Confidence 6778999999999999999998754 457888898998888899999999999864
No 123
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.03 E-value=1.3 Score=35.00 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=82.6
Q ss_pred CCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhC--CCCCCcc-----cHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 037913 16 DSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLD--ADGDGLL-----GFDDFVRLVEGSGEEEKMNDLKEAFKMYE 88 (141)
Q Consensus 16 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d--~~~~~~i-----~~~ef~~~~~~~~~~~~~~~~~~~f~~~D 88 (141)
-.+..|+|..+.+...+.. .-....++.....+. .+++..| +++-|..++...+. +.++..+|..+.
T Consensus 158 qvn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp---R~eie~iF~ki~ 231 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP---RPEIEEIFRKIS 231 (1189)
T ss_pred cccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC---chhHHHHHHHhc
Confidence 3578899998877666544 223344555554442 2222334 45556666654333 346889999998
Q ss_pred ccCCCccCHHHHHHHHHHh----------CCCCCHHHHHHHHHhhCcCC----CCcccHHHHHhhh
Q 037913 89 MDGCGCITPKSLKRMLSRL----------GQSKSDDECKSMIAYFDLNG----DGVLNFDEFRIMM 140 (141)
Q Consensus 89 ~~~~g~I~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~d~~~----~g~i~~~ef~~~l 140 (141)
.++.-++|.++|..+|+.- -....+..+..+++.+.+|. .|+++-+.|+.++
T Consensus 232 ~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 232 GKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred cCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHh
Confidence 8888999999999999763 23457888999999998874 6889999998876
No 124
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=94.60 E-value=0.43 Score=27.12 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=57.3
Q ss_pred CCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC-cchHHHHHHHHHHHhhccCCCcc
Q 037913 19 GDRRISPSELQQCVEAI--GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSG-EEEKMNDLKEAFKMYEMDGCGCI 95 (141)
Q Consensus 19 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~I 95 (141)
-||.++..|...+-+.+ .+.++..+...+...+........++.+|...+.... ......-+..+|... --||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA--~ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVA--YADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCCC
Confidence 48899999987765543 2467788889998888776677789999999887643 334444555666665 344777
Q ss_pred CHHHHH
Q 037913 96 TPKSLK 101 (141)
Q Consensus 96 ~~~e~~ 101 (141)
+..|-.
T Consensus 90 ~~~E~~ 95 (104)
T cd07313 90 DEYEEH 95 (104)
T ss_pred CHHHHH
Confidence 777744
No 125
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.19 E-value=0.14 Score=42.17 Aligned_cols=59 Identities=20% Similarity=0.453 Sum_probs=49.7
Q ss_pred HHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 11 VFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 11 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
.|..+|+|+.|.|+..+|..++..- -.-+..++.-++.....+.+...+|++|+.-+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 4677899999999999999988763 3457788889999999999999999999977643
No 126
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.11 E-value=0.13 Score=38.20 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCC----CHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHH
Q 037913 4 KHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGEL----SLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMND 79 (141)
Q Consensus 4 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~ 79 (141)
-++.+..+|..+|.|+||.++..|+..+.+.....+ +..+. .-.+..|.+++..|+..|......+....
T Consensus 313 ~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~------t~~~~~G~ltl~g~l~~WsL~Tlld~~~t 386 (625)
T KOG1707|consen 313 GYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS------TVKNERGWLTLNGFLSQWSLMTLLDPRRT 386 (625)
T ss_pred HHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc------ceecccceeehhhHHHHHHHHhhccHHHH
Confidence 367789999999999999999999999999875443 11111 11236789999999999887433332222
Q ss_pred H-HHHHHHhhcc
Q 037913 80 L-KEAFKMYEMD 90 (141)
Q Consensus 80 ~-~~~f~~~D~~ 90 (141)
+ ..+|--|..+
T Consensus 387 ~~~L~Ylgf~~~ 398 (625)
T KOG1707|consen 387 LEYLAYLGFPTD 398 (625)
T ss_pred HHHHHhcCCccc
Confidence 2 2334555444
No 127
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.75 E-value=0.32 Score=38.11 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCH-----HHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 75 EKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSD-----DECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 75 ~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
....++++.|..++....|.++.+++.++|..+|...-. +++..++...+++..|+|++.+|...|
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHh
Confidence 456689999999999999999999999999999887654 234455566677777999999998876
No 128
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=0.15 Score=39.99 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhh
Q 037913 76 KMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIM 139 (141)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 139 (141)
....+..+|...|.+.+|.|+..+....+... .++...+..++...+..++|.+++.+|.-.
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~--gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~ 342 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLPF--GLSKPRLAHVWLLADTQNTGTLSKDEFALA 342 (847)
T ss_pred HHHHHHHHHHhccccCCCcccccccccccccC--CCChhhhhhhhhhcchhccCcccccccchh
Confidence 34466778999999999999999999988874 457788899999999999999999987643
No 129
>PLN02952 phosphoinositide phospholipase C
Probab=93.28 E-value=2.3 Score=32.38 Aligned_cols=86 Identities=6% Similarity=0.009 Sum_probs=59.4
Q ss_pred CCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCc--chHHHHHHHHHHHh----h--
Q 037913 19 GDRRISPSELQQCVEAIGG--ELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGE--EEKMNDLKEAFKMY----E-- 88 (141)
Q Consensus 19 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~--~~~~~~~~~~f~~~----D-- 88 (141)
+.|.++.++|..+.+.+.. ..+..++..+|..+..+ .+.++.++|..++..... ....+....++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999888787743 23789999999999654 468999999999987422 12233444444332 1
Q ss_pred -ccCCCccCHHHHHHHHH
Q 037913 89 -MDGCGCITPKSLKRMLS 105 (141)
Q Consensus 89 -~~~~g~I~~~e~~~~l~ 105 (141)
..+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 11234689999988885
No 130
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.14 E-value=0.067 Score=36.86 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=45.3
Q ss_pred HHHHHHhCCCCCCcccHHHHH---HHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHh
Q 037913 45 EAAVEFLDADGDGLLGFDDFV---RLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL 107 (141)
Q Consensus 45 ~~l~~~~d~~~~~~i~~~ef~---~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 107 (141)
.-.|..+|.+.++.|+..|+. .++.... ....-.+.+|+..|.|+|..||..|++..|...
T Consensus 336 ~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 336 HWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 334677888988888866654 4444322 233467889999999999999999999998654
No 131
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.74 E-value=0.33 Score=36.53 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=50.4
Q ss_pred ccHHHHHHHHhcCC-cchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCccc
Q 037913 59 LGFDDFVRLVEGSG-EEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLN 132 (141)
Q Consensus 59 i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~ 132 (141)
++++.|..++.... ......-+..+|+.+|.+++|.|+..++...|..+...-.-+.+.-+++.++++.+ ..+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d 608 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELD 608 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccc
Confidence 33444444444332 22344467789999999999999999999999887544455556778888887766 443
No 132
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.39 E-value=1.2 Score=27.99 Aligned_cols=26 Identities=8% Similarity=0.259 Sum_probs=17.7
Q ss_pred HHHHHHHHhhccCCCccCHHHHHHHHH
Q 037913 79 DLKEAFKMYEMDGCGCITPKSLKRMLS 105 (141)
Q Consensus 79 ~~~~~f~~~D~~~~g~I~~~e~~~~l~ 105 (141)
++...|... .+.+|.++.++++.+..
T Consensus 140 EW~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 140 EWGALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 455555554 56678888888887764
No 133
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=92.20 E-value=1.2 Score=24.91 Aligned_cols=63 Identities=8% Similarity=0.140 Sum_probs=39.6
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHHHHh-----------CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCVEAI-----------GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS 71 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-----------~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~ 71 (141)
++++-+|..+ .|++|.++...|..+|+.+ .+.-.+..+...|... .....|+.++|+.++...
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 4566678888 6889999999999998885 1122555556666554 245679999999998863
No 134
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.85 E-value=1.8 Score=26.28 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=66.9
Q ss_pred HHHhhhCCCCCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC-CcchHHHHHHHHHHH
Q 037913 10 RVFNHFDSNGDRRISPSELQQCVEAI--GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS-GEEEKMNDLKEAFKM 86 (141)
Q Consensus 10 ~~f~~~d~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-~~~~~~~~~~~~f~~ 86 (141)
-+|+... -||.++..|......-+ .+.++..++..+......-+...+++..|...+... ....+.+.+..+|..
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556653 46778887765543333 677889999999988877778889999999999865 444555566666776
Q ss_pred hhccCCCccCHHHHHHHHHHh
Q 037913 87 YEMDGCGCITPKSLKRMLSRL 107 (141)
Q Consensus 87 ~D~~~~g~I~~~e~~~~l~~~ 107 (141)
. ..||.++..|-.-+.+..
T Consensus 112 a--~ADg~l~e~Ed~vi~RvA 130 (148)
T COG4103 112 A--YADGELDESEDHVIWRVA 130 (148)
T ss_pred H--HccccccHHHHHHHHHHH
Confidence 5 556788888877666553
No 135
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=91.19 E-value=0.51 Score=22.56 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHhhhCC--CCCCccCHHHHHHHHHH
Q 037913 2 KEKHQQYERVFNHFDS--NGDRRISPSELQQCVEA 34 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d~--~~~g~i~~~e~~~~l~~ 34 (141)
+..+..+..+|+.|.. .....++..||+.++..
T Consensus 2 E~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 2 EKAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4567888899999862 34678999999998775
No 136
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=90.19 E-value=1.3 Score=34.73 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=76.5
Q ss_pred HHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHH-HHHHHhCCCCCCcccHHHHHHHHhcCCcchHHH---HHHHH
Q 037913 8 YERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAE-AAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMN---DLKEA 83 (141)
Q Consensus 8 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~-~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~---~~~~~ 83 (141)
++..+...|...-..|+..+++..+....+.++..... .-+... ....+.++|++|..+.....-..... .....
T Consensus 146 lrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~ 224 (1267)
T KOG1264|consen 146 LRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKD 224 (1267)
T ss_pred HHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccchhhhhcccch
Confidence 45556667766677799999999998887776554332 333222 33467899999988876532222211 11122
Q ss_pred HHHh--hccCCCccCHHHHHHHHHHhCCCC--CH-HHHHHHHHhhCcC-----CCCcccHHHHHhhh
Q 037913 84 FKMY--EMDGCGCITPKSLKRMLSRLGQSK--SD-DECKSMIAYFDLN-----GDGVLNFDEFRIMM 140 (141)
Q Consensus 84 f~~~--D~~~~g~I~~~e~~~~l~~~~~~~--~~-~~~~~~~~~~d~~-----~~g~i~~~ef~~~l 140 (141)
|-.- +....-.++..+|+++|...-... ++ -.++.++..+-.+ ....+++.||+.+|
T Consensus 225 ~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fL 291 (1267)
T KOG1264|consen 225 FILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFL 291 (1267)
T ss_pred hhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHH
Confidence 2111 111225799999999986542111 11 1344455444222 34568999998875
No 137
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=90.10 E-value=2.4 Score=24.51 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=40.1
Q ss_pred HHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 80 LKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 80 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
+-.+|...+.-++-..+..++..+|...|....++-++.++..+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 346788888889999999999999999999999999999998874
No 138
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=89.46 E-value=2.3 Score=23.46 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=23.1
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcC
Q 037913 93 GCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLN 126 (141)
Q Consensus 93 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 126 (141)
..||..||....+.+|+++++++++.++..+..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGK 46 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 3567777777777777777777777766666444
No 139
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.29 E-value=1 Score=35.63 Aligned_cols=130 Identities=21% Similarity=0.301 Sum_probs=95.9
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC--------------
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS-------------- 71 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-------------- 71 (141)
..+..+|...|..++|+|+..+-...+...+ +....+-.++...+..+.|.++..+|...+...
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 4567889999999999999999887776554 567777788888888888888888887654430
Q ss_pred ----------------------------------CcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHH
Q 037913 72 ----------------------------------GEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECK 117 (141)
Q Consensus 72 ----------------------------------~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~ 117 (141)
...........+|..+.+. +|.++....+.+|..- .+....+.
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~ 165 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLG 165 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhc
Confidence 0001223455556666544 7888888888888754 35666677
Q ss_pred HHHHhhCcCCCCcccHHHHHhhh
Q 037913 118 SMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 118 ~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
.+....|.+.+|.++..+|.-.|
T Consensus 166 ~iw~l~d~d~~g~Ld~~ef~~am 188 (847)
T KOG0998|consen 166 RIWELSDIDKDGNLDRDEFAVAM 188 (847)
T ss_pred cccccccccccCCCChhhhhhhh
Confidence 88888999999999999997665
No 140
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.27 E-value=1.4 Score=33.85 Aligned_cols=77 Identities=16% Similarity=0.396 Sum_probs=52.6
Q ss_pred CCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHh--------CCCCCHHHHHHHHHhhCcCC
Q 037913 56 DGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL--------GQSKSDDECKSMIAYFDLNG 127 (141)
Q Consensus 56 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~--------~~~~~~~~~~~~~~~~d~~~ 127 (141)
++ +++++|. ....+.+..++..|.++|. .+|.++.+++..++... ....+.+....++...+.+.
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDH 74 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccc
Confidence 35 7777777 2334456678888888887 88899998888877653 12234455567777787877
Q ss_pred CCcccHHHHHhh
Q 037913 128 DGVLNFDEFRIM 139 (141)
Q Consensus 128 ~g~i~~~ef~~~ 139 (141)
.|.+.+.++..+
T Consensus 75 ~~y~~~~~~~~l 86 (646)
T KOG0039|consen 75 KGYITNEDLEIL 86 (646)
T ss_pred cceeeecchhHH
Confidence 777776655443
No 141
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=89.25 E-value=2.1 Score=22.60 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=23.3
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcC
Q 037913 95 ITPKSLKRMLSRLGQSKSDDECKSMIAYFDLN 126 (141)
Q Consensus 95 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 126 (141)
++.+++..++...|..++++++..+++.-+..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEK 45 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCc
Confidence 44556778888888888888888888775433
No 142
>PLN02228 Phosphoinositide phospholipase C
Probab=88.90 E-value=3.8 Score=31.01 Aligned_cols=65 Identities=15% Similarity=0.295 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC--cchHHHHHHHHHHHhhcc----CCCccCHHHHHHHH
Q 037913 38 ELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSG--EEEKMNDLKEAFKMYEMD----GCGCITPKSLKRML 104 (141)
Q Consensus 38 ~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~--~~~~~~~~~~~f~~~D~~----~~g~I~~~e~~~~l 104 (141)
..+.+++..+|..+..+ +.++.++|..++.... .....+.+..++..+... ..|.++.+.|..+|
T Consensus 20 ~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 20 REPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 34667777777777432 4677777777776532 222334455556655432 23456666655555
No 143
>PLN02222 phosphoinositide phospholipase C 2
Probab=88.53 E-value=3.5 Score=31.31 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCc--chHHHHHHHHHHHhhc-cCCCccCHHHHHHHHH
Q 037913 39 LSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGE--EEKMNDLKEAFKMYEM-DGCGCITPKSLKRMLS 105 (141)
Q Consensus 39 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~--~~~~~~~~~~f~~~D~-~~~g~I~~~e~~~~l~ 105 (141)
.+..++..+|..+.. ++.++.++|..++..... ....+....++..+.. .+.+.++.+.|..+|.
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 345577777777643 356777777776655321 1223344445554421 2344566666666654
No 144
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=86.80 E-value=0.89 Score=18.03 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=9.8
Q ss_pred hccCCCccCHHHHHH
Q 037913 88 EMDGCGCITPKSLKR 102 (141)
Q Consensus 88 D~~~~g~I~~~e~~~ 102 (141)
|.+++|.|+.-++.-
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 567777777777653
No 145
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=86.53 E-value=4.7 Score=23.58 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=37.8
Q ss_pred HHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 80 LKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 80 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
.-.+|.....-++..+|.+++..+|...|....+..+..+++.+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 345566777778888999999999999999999988888888874
No 146
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=86.09 E-value=4.1 Score=22.51 Aligned_cols=68 Identities=7% Similarity=0.007 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHh
Q 037913 39 LSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL 107 (141)
Q Consensus 39 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 107 (141)
++..+........-.+ ...|++.+|.+.+..........+...+=..+|...+|.||.=||--+.+-+
T Consensus 4 ITK~eA~~FW~~~Fg~-r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFGK-RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp -SSHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eccHHHHHHHHHHCCC-CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 3344444444433222 2447777777776654333333334444456666667777766665555443
No 147
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.86 E-value=0.79 Score=32.39 Aligned_cols=62 Identities=16% Similarity=0.333 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHH-HhhCcCCCCcccHHHHH
Q 037913 76 KMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMI-AYFDLNGDGVLNFDEFR 137 (141)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~-~~~d~~~~g~i~~~ef~ 137 (141)
..+.++++|+.+|+.++|+|+-+-++.++...+...++...-.++ ..+++..-|.|-..+|.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 356899999999999999999999999999887444544433333 33455555555544443
No 148
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.66 E-value=0.8 Score=32.37 Aligned_cols=65 Identities=25% Similarity=0.286 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHH-HHHHHhCCCCCCcccHHHHHHHHh
Q 037913 5 HQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAE-AAVEFLDADGDGLLGFDDFVRLVE 69 (141)
Q Consensus 5 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~-~l~~~~d~~~~~~i~~~ef~~~~~ 69 (141)
...+++.|+.+|+.++|+|+..-+..++..++...++...- .+-..++...-|.|-..+|+....
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 46788999999999999999999999999988555544433 333445555666666666655544
No 149
>PLN02222 phosphoinositide phospholipase C 2
Probab=85.42 E-value=7.1 Score=29.73 Aligned_cols=64 Identities=11% Similarity=0.262 Sum_probs=49.4
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCC--CCHHHHHHHHHHhCC-CCCCcccHHHHHHHHhc
Q 037913 5 HQQYERVFNHFDSNGDRRISPSELQQCVEAIGGE--LSLAEAEAAVEFLDA-DGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 5 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~l~~~~d~-~~~~~i~~~ef~~~~~~ 70 (141)
...+..+|..+-. ++.++.++|..+|...... .+.+.+..++..+.. ...+.++++.|..++..
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 3577888888853 5799999999999988543 467788888887632 23567999999999876
No 150
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=85.28 E-value=0.83 Score=26.73 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 39 LSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 39 ~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
+++++++.++..+-.+..|++.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 67899999999999999999999999998875
No 151
>PLN02230 phosphoinositide phospholipase C 4
Probab=84.69 E-value=6.8 Score=29.95 Aligned_cols=62 Identities=18% Similarity=0.400 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhccCCCccCHHHHHHHHHHhC-C--CCCHHHHHHHHHhhCcC-------CCCcccHHHHHhhh
Q 037913 78 NDLKEAFKMYEMDGCGCITPKSLKRMLSRLG-Q--SKSDDECKSMIAYFDLN-------GDGVLNFDEFRIMM 140 (141)
Q Consensus 78 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~-~--~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~~l 140 (141)
.++..+|..+-.++ +.++.++|..+|.... . ..+.+.+..++..+... +.+.++++.|..+|
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL 100 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYL 100 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHH
Confidence 45556666653222 5666666666665542 1 12344444444332111 22346777776654
No 152
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=84.41 E-value=5.3 Score=31.23 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=64.3
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHH-------HH------hCCCC
Q 037913 45 EAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRML-------SR------LGQSK 111 (141)
Q Consensus 45 ~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l-------~~------~~~~~ 111 (141)
.-+++-||...+|.|..-+|.-.+........++.++.+|...-.++.-.+ ...|...| +. +|..-
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsN 551 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSN 551 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCC
Confidence 345678899999999988887766666666778889999999876666554 44444443 22 23333
Q ss_pred CHHHHHHHHHhhCcCCCCcccHHHHHhhhC
Q 037913 112 SDDECKSMIAYFDLNGDGVLNFDEFRIMMS 141 (141)
Q Consensus 112 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 141 (141)
-+..++.+|.. .++...|++..|..++.
T Consensus 552 vepsvrsCF~~--v~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 552 IEPSVRSCFQF--VNNKPEIEAALFLDWMR 579 (966)
T ss_pred CChHHHHHHHh--cCCCCcchHHHHHHHhc
Confidence 34457888873 35566788889888763
No 153
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=84.39 E-value=7.9 Score=24.32 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=35.5
Q ss_pred ccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037913 59 LGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYF 123 (141)
Q Consensus 59 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 123 (141)
..-..|+.-.-..........+..++..+-.++...++..+|...+- .|+.++++++...+..+
T Consensus 66 ~~~r~~iv~~I~~gklkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 66 LPHRPFIVKYIVDGKLKTNLQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp -TTHHHHHHHHHTTS--SHHHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHHH
T ss_pred chhHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHHH
Confidence 33334443333333334456788888888777777899999988774 37888999987766554
No 154
>PLN02228 Phosphoinositide phospholipase C
Probab=83.96 E-value=11 Score=28.63 Aligned_cols=63 Identities=21% Similarity=0.368 Sum_probs=48.4
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCC--CCHHHHHHHHHHhCCC----CCCcccHHHHHHHHhc
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCVEAIGGE--LSLAEAEAAVEFLDAD----GDGLLGFDDFVRLVEG 70 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~l~~~~d~~----~~~~i~~~ef~~~~~~ 70 (141)
..+..+|..+-. ++.++.++|..+|...... .+.+.+..++..+... ..+.++.+.|..++..
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 567788888753 3689999999999988432 4567788888888543 3467999999999875
No 155
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=83.77 E-value=6.1 Score=23.61 Aligned_cols=79 Identities=24% Similarity=0.358 Sum_probs=49.0
Q ss_pred CCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC-CcchHHHHHHHHHHHhhccCCCcc
Q 037913 19 GDRRISPSELQQCVEAI--GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS-GEEEKMNDLKEAFKMYEMDGCGCI 95 (141)
Q Consensus 19 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~I 95 (141)
-||.++.+|...+...+ ...++......+...++.......++.+++..+... .......-+..++...-.| |.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CCC
Confidence 58899999988776655 444566677777777765555578888888877764 3333444555666666444 556
Q ss_pred CHHH
Q 037913 96 TPKS 99 (141)
Q Consensus 96 ~~~e 99 (141)
+..|
T Consensus 114 ~~~E 117 (140)
T PF05099_consen 114 SPEE 117 (140)
T ss_dssp SCCH
T ss_pred CHHH
Confidence 6555
No 156
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=83.75 E-value=11 Score=25.62 Aligned_cols=101 Identities=10% Similarity=0.125 Sum_probs=60.4
Q ss_pred CCCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHH----HHHHHHHhhccC
Q 037913 18 NGDRRISPSELQQCVEAI--GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMND----LKEAFKMYEMDG 91 (141)
Q Consensus 18 ~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~----~~~~f~~~D~~~ 91 (141)
.-||.|+..|.. +.+.+ .+.++.+.-..+...+........++.+|+..+..... ...+. +..+|..- --
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~-~r~~l~~~lL~~l~~vA--~A 142 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCG-GRFDLLRMFLEIQIQAA--FA 142 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHH--Hh
Confidence 458999999988 44443 34556666444455554444555889999988865321 11122 24445544 24
Q ss_pred CCccCHHHHHHHHHHh--CCCCCHHHHHHHHHhh
Q 037913 92 CGCITPKSLKRMLSRL--GQSKSDDECKSMIAYF 123 (141)
Q Consensus 92 ~g~I~~~e~~~~l~~~--~~~~~~~~~~~~~~~~ 123 (141)
||.++..|-. +++.+ ...++..++..+...+
T Consensus 143 DG~l~~~E~~-~L~~Ia~~Lgis~~df~~~~~~~ 175 (267)
T PRK09430 143 DGSLHPNERQ-VLYVIAEELGFSRFQFDQLLRMM 175 (267)
T ss_pred cCCCCHHHHH-HHHHHHHHcCCCHHHHHHHHHHH
Confidence 5889999944 44443 2456777777666553
No 157
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=83.44 E-value=4.1 Score=28.33 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=41.3
Q ss_pred HHhhhCCCCCCccCHHHHHHHHHHh---CCC--CCHHHH-----------HHHHHHhCCCCCCcccHHHHHHHHhcC
Q 037913 11 VFNHFDSNGDRRISPSELQQCVEAI---GGE--LSLAEA-----------EAAVEFLDADGDGLLGFDDFVRLVEGS 71 (141)
Q Consensus 11 ~f~~~d~~~~g~i~~~e~~~~l~~~---~~~--~~~~~~-----------~~l~~~~d~~~~~~i~~~ef~~~~~~~ 71 (141)
.|...|.|++|.++..++.+++..- -+. -..+++ ..++...|.+.+.-|+.++|+..-...
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 4667788999999999998876542 111 112222 234566788888889999998776553
No 158
>PLN02230 phosphoinositide phospholipase C 4
Probab=83.38 E-value=13 Score=28.58 Aligned_cols=64 Identities=30% Similarity=0.402 Sum_probs=47.1
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCC---CCHHHHHHHHHHhCC-------CCCCcccHHHHHHHHhc
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCVEAIGGE---LSLAEAEAAVEFLDA-------DGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~l~~~~d~-------~~~~~i~~~ef~~~~~~ 70 (141)
..+..+|..+-. +.+.++.++|..+|..-... .+.+.+..++..+.. -+.+.++++.|..++..
T Consensus 29 ~ei~~lf~~~s~-~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYAD-GDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 567888999853 34899999999999998632 356777777765421 12356999999998865
No 159
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=83.13 E-value=2.7 Score=21.92 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=31.9
Q ss_pred cCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCC
Q 037913 90 DGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNG 127 (141)
Q Consensus 90 ~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 127 (141)
..++.++...+...|...|..++++.++..+..++.++
T Consensus 9 ~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 34578999999999988899999999999998887654
No 160
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=82.91 E-value=7.2 Score=22.70 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=36.9
Q ss_pred HHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 81 KEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 81 ~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
-.+|......++..+|.+++..+|+..|....+.-+..+++.+.
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 34566777788889999999999999999988888888888774
No 161
>PLN02223 phosphoinositide phospholipase C
Probab=81.97 E-value=11 Score=28.46 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhccCCCccCHHHHHHHH---HHh-C-CCCCHHHHHHHHHhhCcC--------CCCcccHHHHHhhh
Q 037913 78 NDLKEAFKMYEMDGCGCITPKSLKRML---SRL-G-QSKSDDECKSMIAYFDLN--------GDGVLNFDEFRIMM 140 (141)
Q Consensus 78 ~~~~~~f~~~D~~~~g~I~~~e~~~~l---~~~-~-~~~~~~~~~~~~~~~d~~--------~~g~i~~~ef~~~l 140 (141)
+.++.+|..+- ++.|.++.+.+.+++ ... | ...+.+.++.++..+-.. ..+.++++.|..+|
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 34556666552 455666666666665 222 2 223444445544443221 12447777777665
No 162
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=80.25 E-value=6.9 Score=20.77 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=30.5
Q ss_pred CcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHh
Q 037913 57 GLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL 107 (141)
Q Consensus 57 ~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 107 (141)
-.++|...+..+.....+.....+...|..+ +.+.|+.+||.+.++.+
T Consensus 7 p~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~---k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLPPSKMDLLQKHYEEF---KKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHHCCHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHH
Confidence 4566776666666655555555555555444 45678888888877764
No 163
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=79.81 E-value=2.8 Score=22.28 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=34.5
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 20 DRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 20 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
+-.+++..+..++.. .++...+..+...|+.-..+.|+.++|+..+..
T Consensus 6 sp~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 6 SPWMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred CCcccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 455665555554444 467777778877777667889999999998875
No 164
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=79.41 E-value=25 Score=28.52 Aligned_cols=65 Identities=15% Similarity=0.312 Sum_probs=53.8
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHHHHhCC----------CCCHHHHHHHHHHhCCCC----CCcccHHHHHHHHhc
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCVEAIGG----------ELSLAEAEAAVEFLDADG----DGLLGFDDFVRLVEG 70 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~----------~~~~~~~~~l~~~~d~~~----~~~i~~~ef~~~~~~ 70 (141)
.++.++|..+-.+...++|..+|..+|+.-.. ......+..++..+..+. .|.++.+.|+..+..
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 56788899998888899999999999988532 356778889999887664 689999999999887
No 165
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=78.08 E-value=9.5 Score=21.12 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=45.0
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc---CCcchHHHHHHHHHHHh
Q 037913 21 RRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG---SGEEEKMNDLKEAFKMY 87 (141)
Q Consensus 21 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~---~~~~~~~~~~~~~f~~~ 87 (141)
..||..||....+..+.+++.+..+.+...+..+.-.-.+-++=..++.. ...+..-..+..+|..|
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999998886655555555554444433 23344444445555443
No 166
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=77.94 E-value=13 Score=22.65 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=18.4
Q ss_pred CCccCHHHHHHHHHHh-CCCCCHHHHHHHHHhhC
Q 037913 92 CGCITPKSLKRMLSRL-GQSKSDDECKSMIAYFD 124 (141)
Q Consensus 92 ~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d 124 (141)
.+.|+.+-|+.+|+.+ ..+++++-..++|..+-
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4577777777777764 55555555566776653
No 167
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=76.67 E-value=13 Score=21.85 Aligned_cols=43 Identities=21% Similarity=0.450 Sum_probs=35.4
Q ss_pred HHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 82 EAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 82 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
.+|...-..++..+|.+++..+|...|....+.-+..++..+.
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 4556666677788999999999999999888888888887774
No 168
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=76.38 E-value=26 Score=26.18 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=44.7
Q ss_pred HHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh---C-----CCCCCcccHHHHHHHHhc
Q 037913 11 VFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFL---D-----ADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 11 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~---d-----~~~~~~i~~~ef~~~~~~ 70 (141)
+|..+...+++.++.-.|..+|++.|+.-+.+.+..++..+ + ....+.++.+-|...+..
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 56777555579999999999999999998888887777655 2 122345788888777654
No 169
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=76.21 E-value=12 Score=21.14 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=47.0
Q ss_pred CCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC---CcchHHHHHHHHHHHhhccCCCc
Q 037913 19 GDRRISPSELQQCVEAI-GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS---GEEEKMNDLKEAFKMYEMDGCGC 94 (141)
Q Consensus 19 ~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~---~~~~~~~~~~~~f~~~D~~~~g~ 94 (141)
-||.++..|...+-+.+ ....+......+...+........++.+|...+... .+.....-+..+|..--- ||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--DG~ 89 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--DGE 89 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cCC
Confidence 48899999877654443 233444445555555543333337788888887763 233334455555665533 577
Q ss_pred cCHHHHH
Q 037913 95 ITPKSLK 101 (141)
Q Consensus 95 I~~~e~~ 101 (141)
++..|-.
T Consensus 90 ~~~~E~~ 96 (106)
T cd07316 90 LSEAERE 96 (106)
T ss_pred CCHHHHH
Confidence 8777744
No 170
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=75.77 E-value=9.4 Score=19.89 Aligned_cols=33 Identities=9% Similarity=0.143 Sum_probs=29.6
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 037913 19 GDRRISPSELQQCVEAIGGELSLAEAEAAVEFL 51 (141)
Q Consensus 19 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 51 (141)
.+..|+.+.++..+.+.|..+++..++.+++..
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 366899999999999999999999999998876
No 171
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=75.72 E-value=11 Score=21.42 Aligned_cols=80 Identities=18% Similarity=0.095 Sum_probs=41.9
Q ss_pred CCCccCHHHHHHHHHHhC--CCC---CHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC-cchHHHHHHHHHHHhhccCC
Q 037913 19 GDRRISPSELQQCVEAIG--GEL---SLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSG-EEEKMNDLKEAFKMYEMDGC 92 (141)
Q Consensus 19 ~~g~i~~~e~~~~l~~~~--~~~---~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~D~~~~ 92 (141)
-||.++..|...+.+.+. ..+ ....+..++...-..- ...+..++...+.... ......-+..++... .-|
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia--~aD 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIA--AAD 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHH--Hcc
Confidence 478899888887777663 222 3344444444332220 1344566666665533 333333444555555 344
Q ss_pred CccCHHHHH
Q 037913 93 GCITPKSLK 101 (141)
Q Consensus 93 g~I~~~e~~ 101 (141)
|.++..|-.
T Consensus 92 G~~~~~E~~ 100 (111)
T cd07176 92 GEVDPEERA 100 (111)
T ss_pred CCCCHHHHH
Confidence 677776633
No 172
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=74.49 E-value=8.2 Score=22.31 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=12.0
Q ss_pred hCCCCCCcccHHHHHHHHhc
Q 037913 51 LDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 51 ~d~~~~~~i~~~ef~~~~~~ 70 (141)
||...+..|+.++...++..
T Consensus 12 YDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cCCCccceeeHHHHHHHHHC
Confidence 45555566666666666654
No 173
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=74.37 E-value=6.4 Score=22.23 Aligned_cols=52 Identities=8% Similarity=-0.041 Sum_probs=27.1
Q ss_pred CCCcccHHHHHHHHh---cCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHh
Q 037913 55 GDGLLGFDDFVRLVE---GSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL 107 (141)
Q Consensus 55 ~~~~i~~~ef~~~~~---~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 107 (141)
.+|.++-.|-...-. .... ........+...+........+..++.+.+...
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFG-LDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 367787777554432 2111 112334444455544445566777777766653
No 174
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=74.06 E-value=11 Score=19.87 Aligned_cols=45 Identities=18% Similarity=0.080 Sum_probs=27.3
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 037913 23 ISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRL 67 (141)
Q Consensus 23 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 67 (141)
++.+++..++...++.++.+++..++..-+..+-...+=..+..+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~F 58 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNF 58 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHH
Confidence 344567777777778888888877777655444433443333333
No 175
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.77 E-value=27 Score=23.78 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhh-CCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 4 KHQQYERVFNHF-DSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 4 ~~~~~~~~f~~~-d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
....+...|..+ |+..+..|-.+.+..++..+|..+..-.+-.+.-.+....-+..+..+|+.-+..
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTA 129 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 345667777765 4444468999999999999998877666666666777667788999999886654
No 176
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=72.71 E-value=1.6 Score=28.19 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=39.1
Q ss_pred HHHhhc-cCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhh
Q 037913 84 FKMYEM-DGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIM 139 (141)
Q Consensus 84 f~~~D~-~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 139 (141)
|-.+|+ ..+|++|-.|+.-+-. ..-+.+.-+..+|...|.|+++.|++++|...
T Consensus 193 f~qld~~p~d~~~sh~el~pl~a--p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRA--PLIPMEHCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred eccccCCCccccccccccccccC--CcccHHhhchhhhhcccCCCCCceeHHHhhcc
Confidence 555565 3589999988764322 22235566688999999999999999998654
No 177
>PRK00523 hypothetical protein; Provisional
Probab=71.20 E-value=14 Score=19.75 Aligned_cols=33 Identities=9% Similarity=0.143 Sum_probs=29.4
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 037913 19 GDRRISPSELQQCVEAIGGELSLAEAEAAVEFL 51 (141)
Q Consensus 19 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 51 (141)
.+..|+.+-++..+.+.|..+++..++.+++..
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 366899999999999999999999999998876
No 178
>PLN02223 phosphoinositide phospholipase C
Probab=70.80 E-value=37 Score=25.79 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=46.7
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHH---HHhC--CCCCHHHHHHHHHHhCCCC--------CCcccHHHHHHHHhc
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCV---EAIG--GELSLAEAEAAVEFLDADG--------DGLLGFDDFVRLVEG 70 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l---~~~~--~~~~~~~~~~l~~~~d~~~--------~~~i~~~ef~~~~~~ 70 (141)
..+..+|..+ .++.|.++...+..++ .... ...+.++++.++..+-... .+.++.+.|..++..
T Consensus 16 ~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4567788888 3678999999999988 4332 3466777777777653322 256999999999876
No 179
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=70.23 E-value=12 Score=32.24 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCC----CHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGEL----SLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
...+.+++++..+|++..|+|+..++...++.+..++ ..+. +.+...+....++.|.+.+-+..+..
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 3567889999999999999999999999999984332 2222 33333444557788999988887765
No 180
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=70.11 E-value=9.5 Score=24.47 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=22.0
Q ss_pred hccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 88 EMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 88 D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
..+.+|+++.+++.+.+..-+..++.+++..++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4577888888888888877677777888888776643
No 181
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=69.28 E-value=14 Score=23.67 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=21.7
Q ss_pred ccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037913 89 MDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYF 123 (141)
Q Consensus 89 ~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 123 (141)
.|.+|++..+++.+.++..+..++.+.+..++..-
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d 62 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESD 62 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcC
Confidence 45667777777776665544456666666666543
No 182
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.27 E-value=24 Score=21.68 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=38.7
Q ss_pred HHHHHhhccCCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 82 EAFKMYEMDGCGCITPKSLKRMLSRL--GQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 82 ~~f~~~D~~~~g~I~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
-.|++. .-||.++..|...+.+-+ .+.++..++..++.....-+...+++-.|...|
T Consensus 34 Llf~Vm--~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l 92 (148)
T COG4103 34 LLFHVM--EADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVL 92 (148)
T ss_pred HHHHHH--hcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445555 556888888877654433 456688888888877766666677777776544
No 183
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=68.78 E-value=16 Score=22.29 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=21.9
Q ss_pred CCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCC
Q 037913 18 NGDRRISPSELQQCVEAI-GGELSLAEAEAAVEFLDADG 55 (141)
Q Consensus 18 ~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~ 55 (141)
++.+.|+.+.|+..|+.. ...++.+.+..+|..|....
T Consensus 44 ~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 44 NPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp EETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred CCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 345577888888877774 66677777888887775443
No 184
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=68.43 E-value=8.8 Score=19.95 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=27.6
Q ss_pred HHhhccCCCccCHHHHHHHHHH----------hCCCCCHHHHHHHHHhh
Q 037913 85 KMYEMDGCGCITPKSLKRMLSR----------LGQSKSDDECKSMIAYF 123 (141)
Q Consensus 85 ~~~D~~~~g~I~~~e~~~~l~~----------~~~~~~~~~~~~~~~~~ 123 (141)
+.+|...+.+|+.+++.++.+. .|.+++...+-.++..-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 4678888888999998888864 26667777665555443
No 185
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=68.41 E-value=31 Score=22.73 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=17.5
Q ss_pred cCCCccCHHHHHHHHHHhC---CCCCHHHHHHHHHhhCcC
Q 037913 90 DGCGCITPKSLKRMLSRLG---QSKSDDECKSMIAYFDLN 126 (141)
Q Consensus 90 ~~~g~I~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~ 126 (141)
.+.|.|+..|+...+.+.. ..++++++...++.+..=
T Consensus 109 ~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~l 148 (223)
T PF04157_consen 109 KNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVL 148 (223)
T ss_dssp TTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCC
T ss_pred cCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHc
Confidence 3345666666655555532 124555555555554433
No 186
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=66.95 E-value=8.3 Score=23.08 Aligned_cols=67 Identities=18% Similarity=0.105 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHhCCCC--CCcccHHHHHHHHhc--------CCc----------chHHHHHHHHHHHhhccCCCccCHHH
Q 037913 40 SLAEAEAAVEFLDADG--DGLLGFDDFVRLVEG--------SGE----------EEKMNDLKEAFKMYEMDGCGCITPKS 99 (141)
Q Consensus 40 ~~~~~~~l~~~~d~~~--~~~i~~~ef~~~~~~--------~~~----------~~~~~~~~~~f~~~D~~~~g~I~~~e 99 (141)
+-..+..+|+....+. +..++..+....+.. ... ....-.+..++..||++++|.|+.-.
T Consensus 39 ~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls 118 (127)
T PF09068_consen 39 DLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLS 118 (127)
T ss_dssp -HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHH
T ss_pred eHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhH
Confidence 4444555555554332 345777776666543 010 11222466778999999999999999
Q ss_pred HHHHHHH
Q 037913 100 LKRMLSR 106 (141)
Q Consensus 100 ~~~~l~~ 106 (141)
++.+|..
T Consensus 119 ~KvaL~~ 125 (127)
T PF09068_consen 119 FKVALIT 125 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887754
No 187
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=65.82 E-value=9.3 Score=20.48 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhC-CCCCCcccHHHHHHHHh
Q 037913 41 LAEAEAAVEFLD-ADGDGLLGFDDFVRLVE 69 (141)
Q Consensus 41 ~~~~~~l~~~~d-~~~~~~i~~~ef~~~~~ 69 (141)
.+++..+...+. .-..|.+.-+||.+++.
T Consensus 12 ~e~~~~~~~ql~Q~~~~Gkv~~ee~n~~~e 41 (75)
T TIGR02675 12 AEEADGALIQLSQMLASGKLRGEEINSLLE 41 (75)
T ss_pred HHHHHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence 344444443332 12356666666666654
No 188
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=65.44 E-value=21 Score=19.76 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=38.1
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 037913 20 DRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVE 69 (141)
Q Consensus 20 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 69 (141)
.-.|+..+|...|.....-....+...+-..+|...++.|+.=||-.+..
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 35799999999999986666667888888899999999999777655543
No 189
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.63 E-value=21 Score=18.97 Aligned_cols=34 Identities=9% Similarity=0.123 Sum_probs=29.4
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 037913 19 GDRRISPSELQQCVEAIGGELSLAEAEAAVEFLD 52 (141)
Q Consensus 19 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 52 (141)
.+..|+.+-++..+.+.|..+++..++.+++...
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4668999999999999999999999999987763
No 190
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=62.81 E-value=18 Score=23.21 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=23.6
Q ss_pred CCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 037913 17 SNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLD 52 (141)
Q Consensus 17 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 52 (141)
.+.+|+++.+++...++.-+..++.+++..+...-+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 478999999999988888777788888888887654
No 191
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=62.74 E-value=12 Score=20.34 Aligned_cols=46 Identities=7% Similarity=0.168 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Q 037913 5 HQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDAD 54 (141)
Q Consensus 5 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 54 (141)
...+..+...- ...|+||..++..+|.... ++...+..++..+...
T Consensus 6 ~~~i~~Li~~g--K~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 6 EEAIKKLIEKG--KKKGYLTYDEINDALPEDD--LDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHHHHHHHHHH--HHHSS-BHHHHHHH-S-S-----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH--hhcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHHHC
Confidence 33444444443 2356677777766666332 4556666666666433
No 192
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=62.48 E-value=15 Score=18.89 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=18.8
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 037913 94 CITPKSLKRMLSRLGQSKSDDECKSMI 120 (141)
Q Consensus 94 ~I~~~e~~~~l~~~~~~~~~~~~~~~~ 120 (141)
.|+.++|..+|+...-.++.+++..+-
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 478888888888877677777765543
No 193
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=62.42 E-value=37 Score=24.22 Aligned_cols=86 Identities=12% Similarity=0.151 Sum_probs=49.6
Q ss_pred HHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHh---------C--CCCCHHHHH
Q 037913 49 EFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL---------G--QSKSDDECK 117 (141)
Q Consensus 49 ~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~---------~--~~~~~~~~~ 117 (141)
..+|..+.|.+..-.....+.........++++.+|.... +.+|.+..-.+-+++... | ...++-.++
T Consensus 117 aA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~te~~a~ 195 (434)
T KOG4301|consen 117 AAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTELSAR 195 (434)
T ss_pred hhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHHHHHH
Confidence 4456666666554433333333344456778888888884 666887777777777654 1 111233333
Q ss_pred HHHHhhCcCCCCcccHHHHHhhh
Q 037913 118 SMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 118 ~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
..|. ++.+|+++.|+..|
T Consensus 196 ~cf~-----qqrKv~Ln~fldtl 213 (434)
T KOG4301|consen 196 LCFL-----QQRKVELNQFLDTL 213 (434)
T ss_pred HHHH-----HHHHHHHHHHHHHH
Confidence 3332 34567777777654
No 194
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=62.19 E-value=22 Score=21.59 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=37.8
Q ss_pred CCCccCHHHHHHHHHHh-------C--CCCCHHHHHHHHHhhCcCCCCc-ccHHHHHhh
Q 037913 91 GCGCITPKSLKRMLSRL-------G--QSKSDDECKSMIAYFDLNGDGV-LNFDEFRIM 139 (141)
Q Consensus 91 ~~g~I~~~e~~~~l~~~-------~--~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~ 139 (141)
++..||.+||.+.++.- | ..+++++++.+...+...+.+. +|+.|-+++
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 66789999999988763 2 2358899999999988766654 898887654
No 195
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=60.40 E-value=31 Score=19.94 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=27.3
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 95 ITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 95 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
||.+++..+|...|....+..+..+++.+.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa 46 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN 46 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc
Confidence 999999999999999999998888888863
No 196
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=60.09 E-value=28 Score=22.30 Aligned_cols=36 Identities=17% Similarity=0.044 Sum_probs=28.6
Q ss_pred CCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 037913 17 SNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLD 52 (141)
Q Consensus 17 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 52 (141)
-|.+|+++.+++...++.-+..++.+.+.++...-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 378999999999988876556678888888876544
No 197
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=60.06 E-value=6 Score=25.33 Aligned_cols=42 Identities=21% Similarity=0.436 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHH
Q 037913 76 KMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECK 117 (141)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~ 117 (141)
..+..+++|..||+.+--..+.+++.+.+...|+--....+.
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~ 94 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIK 94 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHH
Confidence 467899999999999999999999999998887655444433
No 198
>PRK01844 hypothetical protein; Provisional
Probab=59.36 E-value=26 Score=18.73 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=29.5
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 037913 19 GDRRISPSELQQCVEAIGGELSLAEAEAAVEFL 51 (141)
Q Consensus 19 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 51 (141)
.+..|+.+-++..+.+.|..+++..++.+++..
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 456899999999999999999999999998876
No 199
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=59.11 E-value=26 Score=19.08 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCC-CCcccHHHHHhhh
Q 037913 96 TPKSLKRMLSRLGQSKSDDECKSMIAYFDLNG-DGVLNFDEFRIMM 140 (141)
Q Consensus 96 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~-~g~i~~~ef~~~l 140 (141)
...++...|. |.+.+.+.+...+...+.+. -+.++-+++.+++
T Consensus 43 ~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 3566666663 67778888888888875543 3578888887764
No 200
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=58.97 E-value=32 Score=19.59 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=30.9
Q ss_pred ccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHhh
Q 037913 59 LGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL-GQSKSDDECKSMIAYF 123 (141)
Q Consensus 59 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 123 (141)
|.-.+|..++......-..+++..+-..+-..+...++..++...+..+ +..+++++++.+-..+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRARL 85 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 4445555444443333444455555555544444444666666555554 4445666665555444
No 201
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=58.64 E-value=30 Score=21.49 Aligned_cols=82 Identities=11% Similarity=0.217 Sum_probs=49.5
Q ss_pred HHHHHHhhhCCCC----CC-ccCHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC-----C
Q 037913 7 QYERVFNHFDSNG----DR-RISPSELQQCVEAIG----GELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS-----G 72 (141)
Q Consensus 7 ~~~~~f~~~d~~~----~g-~i~~~e~~~~l~~~~----~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~-----~ 72 (141)
.+.+.|+.|-.-+ +| .|+-.++..++..++ -.++.-....+|..+....-+.++|++|...+... .
T Consensus 13 ~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k 92 (180)
T KOG4070|consen 13 GLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRFK 92 (180)
T ss_pred hHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhhc
Confidence 3455555553322 22 367777888888874 34555666677777766666789999996655431 2
Q ss_pred cchHHHHHHHHHHHhh
Q 037913 73 EEEKMNDLKEAFKMYE 88 (141)
Q Consensus 73 ~~~~~~~~~~~f~~~D 88 (141)
..+.++.+..++..+-
T Consensus 93 ~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 93 GKSKEEALDAICQLLA 108 (180)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3444555666665554
No 202
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=58.58 E-value=60 Score=24.02 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 5 HQQYERVFNHFDSNGDRRISPSELQQCVEAI-GGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 5 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
.+.++.+-+.+|.|++|.|+.+|=..+|+.- .+.-+...-.. .| +..+..|+.++....+..
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~---~f-H~dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSE---KF-HGDDKHITVEDLWEAWKE 129 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhh---hc-cCCccceeHHHHHHHHHh
Confidence 4567888899999999999999988887763 33322222122 22 445677888887777655
No 203
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=57.82 E-value=43 Score=20.74 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHh
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAI 35 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 35 (141)
.++..+.......|..+.+|||.++++.++-.+
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 356677777888888888899999998876554
No 204
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=56.59 E-value=22 Score=17.10 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=21.9
Q ss_pred CCCccC-HHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037913 91 GCGCIT-PKSLKRMLSRLGQSKSDDECKSMIAYF 123 (141)
Q Consensus 91 ~~g~I~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 123 (141)
..|.|+ ..++...+...|..++++.++.+++..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 456776 444444455568888888888877654
No 205
>PHA02105 hypothetical protein
Probab=56.39 E-value=26 Score=17.77 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=23.9
Q ss_pred cCHHHHHHHHHHh---CCCCCHHHHHHHHHhhCcCCC--CcccHHHHHhhh
Q 037913 95 ITPKSLKRMLSRL---GQSKSDDECKSMIAYFDLNGD--GVLNFDEFRIMM 140 (141)
Q Consensus 95 I~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~--g~i~~~ef~~~l 140 (141)
++.+|+..++..- ..++..+-++.+-.-+...+- -.++|+||..+|
T Consensus 5 lt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 5 LTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred ecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 5666666666542 234444444444443433332 246788877654
No 206
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=53.72 E-value=50 Score=20.28 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=26.6
Q ss_pred HHHHHHhCCCCCHHHHHHHHH----------hhCcCCCCcccHHHHHhhh
Q 037913 101 KRMLSRLGQSKSDDECKSMIA----------YFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 101 ~~~l~~~~~~~~~~~~~~~~~----------~~d~~~~g~i~~~ef~~~l 140 (141)
..-++++|+..+++++..++. .+-.+.+|..+-..+.+++
T Consensus 96 ~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 96 EQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 334456688888888877661 1234568888888887764
No 207
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=53.42 E-value=37 Score=20.76 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=19.3
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhhCc
Q 037913 95 ITPKSLKRMLSRLGQSKSDDECKSMIAYFDL 125 (141)
Q Consensus 95 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 125 (141)
.|.++++.+...+...+++++++.++..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 3556666665555566666666666666654
No 208
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=52.55 E-value=55 Score=23.24 Aligned_cols=43 Identities=14% Similarity=0.297 Sum_probs=27.0
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 92 CGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 92 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
.|.||++|-...++.......++.++.+++.++ ||-+||..++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 577777777777766543444566667776663 5556666654
No 209
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=52.35 E-value=45 Score=19.36 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=27.8
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 94 CITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 94 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
.||.+++..+|...|....+.-+..++..+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 8999999999999999998888888888764
No 210
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=52.08 E-value=66 Score=21.15 Aligned_cols=100 Identities=8% Similarity=0.098 Sum_probs=58.9
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHH-HHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHH
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQC-VEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAF 84 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~-l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f 84 (141)
..+..+-..+. .+-.++...|... +..+...-.++.+..|+..+-.-......+..|+..+.........+++...|
T Consensus 13 ~~l~~v~~~iK--~~~pf~t~lFd~~~~~~~s~q~~ee~F~~l~~sV~~m~~~i~~~n~fl~~~~~~~~~~~~~~~~~Yy 90 (205)
T PF12238_consen 13 KALKKVLDLIK--ENPPFKTSLFDETVLSNLSGQSDEEKFKSLFDSVPLMKHKISHMNAFLNDWPPHMLEEGREKMTKYY 90 (205)
T ss_pred HHHHHHHHHHc--cCCCCchhhhhHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhccHHHHHHHH
Confidence 33444444442 3446666777653 44445555566666666554322222233444554333333445567888899
Q ss_pred HHhhccCCCcc-CHHHHHHHHHHh
Q 037913 85 KMYEMDGCGCI-TPKSLKRMLSRL 107 (141)
Q Consensus 85 ~~~D~~~~g~I-~~~e~~~~l~~~ 107 (141)
+.+=-+.+..+ +.+-+..+++.+
T Consensus 91 KkhIy~~d~~v~d~~~lv~~ck~F 114 (205)
T PF12238_consen 91 KKHIYKEDSEVKDYNGLVKFCKDF 114 (205)
T ss_pred HHhccCcccccccHHHHHHHHHHH
Confidence 98877778888 999999998876
No 211
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=51.65 E-value=25 Score=18.58 Aligned_cols=13 Identities=8% Similarity=0.051 Sum_probs=4.7
Q ss_pred CCCCCHHHHHHHH
Q 037913 36 GGELSLAEAEAAV 48 (141)
Q Consensus 36 ~~~~~~~~~~~l~ 48 (141)
|...+++.+..+|
T Consensus 57 G~~~~ediLd~IF 69 (73)
T PF12631_consen 57 GEVVTEDILDNIF 69 (73)
T ss_dssp TSS--HHHHHHHH
T ss_pred CCCChHHHHHHHH
Confidence 3334444444444
No 212
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=50.69 E-value=34 Score=17.48 Aligned_cols=30 Identities=7% Similarity=0.187 Sum_probs=21.7
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037913 94 CITPKSLKRMLSRLGQSKSDDECKSMIAYF 123 (141)
Q Consensus 94 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 123 (141)
.+|.+|+...+..++..++..+.-.++...
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 477788888888887777777766666554
No 213
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.35 E-value=44 Score=18.67 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=34.5
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 91 GCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 91 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
..|.+|.++...+-.+.+.....+.++.++..+. . |.=-|..|++.+
T Consensus 30 ~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r--g~~aF~~Fl~aL 76 (88)
T cd08819 30 EQGLLTEEDRNRIEAATENHGNESGARELLKRIV-Q--KEGWFSKFLQAL 76 (88)
T ss_pred hcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-c--CCcHHHHHHHHH
Confidence 3468888888888877666667888888888887 3 333577787765
No 214
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=50.29 E-value=66 Score=24.23 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=43.5
Q ss_pred HHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh---Cc-----CCCCcccHHHHHhhh
Q 037913 82 EAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYF---DL-----NGDGVLNFDEFRIMM 140 (141)
Q Consensus 82 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~g~i~~~ef~~~l 140 (141)
.+|..+-....+.|+.-.|..+|+..|+.-++.-+..++..+ +. ...+.++.+.|.++.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 457777666679999999999999999888777676666553 22 234568888887754
No 215
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=49.66 E-value=24 Score=15.47 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=11.3
Q ss_pred CCccCHHHHHHHHHHh
Q 037913 92 CGCITPKSLKRMLSRL 107 (141)
Q Consensus 92 ~g~I~~~e~~~~l~~~ 107 (141)
.|.|+.+++..+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5777888877777653
No 216
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=49.22 E-value=8.7 Score=20.76 Aligned_cols=44 Identities=11% Similarity=0.317 Sum_probs=28.6
Q ss_pred CCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHH
Q 037913 18 NGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFD 62 (141)
Q Consensus 18 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ 62 (141)
+.+|.-+..+|..+|..+|...-+..++-+++.+. .+.|.+.++
T Consensus 36 ~dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSMt-R~tgF~E~~ 79 (88)
T PF15144_consen 36 DDSGKNPEPDFPKFLNLLGTEIIENAVEFILRSMT-RSTGFMEFE 79 (88)
T ss_pred cccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhh-cccCceecC
Confidence 34555666678888888887777777777777773 334554443
No 217
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=47.31 E-value=27 Score=15.37 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=13.1
Q ss_pred ccCHHHHHHHHHHhCCCC
Q 037913 94 CITPKSLKRMLSRLGQSK 111 (141)
Q Consensus 94 ~I~~~e~~~~l~~~~~~~ 111 (141)
.++..+++..++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 467788888888876554
No 218
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=47.06 E-value=58 Score=19.04 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=41.1
Q ss_pred HHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 037913 10 RVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRL 67 (141)
Q Consensus 10 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 67 (141)
..|-.+...++-.-+..+++.+|...|.....+.+..++..+. |+ +.+|.+..
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 4455666677778899999999999999999999999998873 33 56665543
No 219
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.02 E-value=76 Score=20.38 Aligned_cols=104 Identities=15% Similarity=0.216 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCCCCcccHHHHHHHHhc-C------
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFL----DADGDGLLGFDDFVRLVEG-S------ 71 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~----d~~~~~~i~~~ef~~~~~~-~------ 71 (141)
.+.+.+++.|..||+..--.++.+++..++..-++--...-+..+.... +... . +|.+|+=.... .
T Consensus 50 ~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~-e--sf~~ylW~fv~~~Pi~~~~ 126 (179)
T TIGR00624 50 RKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQ-N--DLVEFLWSFVNHQPQPRQR 126 (179)
T ss_pred HhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHH-c--cHHHHHHhccCCCCccCCc
Confidence 5677889999999998878888899988888776655555554444321 1111 1 67766633211 0
Q ss_pred ----CcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCC
Q 037913 72 ----GEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQ 109 (141)
Q Consensus 72 ----~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~ 109 (141)
.-+...+.-..+.+.+-+.|-..+...-...+|.+.|.
T Consensus 127 ~~~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 127 PTDSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred cccccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 01112223445555555566666666666666666553
No 220
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=45.84 E-value=14 Score=31.84 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=46.0
Q ss_pred cchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCC----CHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 73 EEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSK----SDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 73 ~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
.+.+.+....+|..+|++..|.|...++...++.+..++ ..+. +.+--.+....++.|++.+-+-++
T Consensus 1412 s~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL 1482 (1592)
T KOG2301|consen 1412 SEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFAL 1482 (1592)
T ss_pred CcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHH
Confidence 445667899999999999999999999999999873322 1111 223333445567777776655443
No 221
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=45.75 E-value=51 Score=18.07 Aligned_cols=81 Identities=14% Similarity=0.147 Sum_probs=39.4
Q ss_pred CCCccCHHHHHHHHHHhCCC--CCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCc-chHHHHHHHHHHHhhccCCCcc
Q 037913 19 GDRRISPSELQQCVEAIGGE--LSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGE-EEKMNDLKEAFKMYEMDGCGCI 95 (141)
Q Consensus 19 ~~g~i~~~e~~~~l~~~~~~--~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~I 95 (141)
-||.++.+|...+...+... ++......+...+........+...+......... .....-+..++... .-||.+
T Consensus 12 aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia--~aDG~~ 89 (104)
T cd07177 12 ADGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAEAGDLAALAALLKELPDAELREALLAALWEVA--LADGEL 89 (104)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhccCC
Confidence 38899999987766555221 13333333433332111102234444444443322 33344445555555 345677
Q ss_pred CHHHHH
Q 037913 96 TPKSLK 101 (141)
Q Consensus 96 ~~~e~~ 101 (141)
+..|..
T Consensus 90 ~~~E~~ 95 (104)
T cd07177 90 DPEERA 95 (104)
T ss_pred CHHHHH
Confidence 777644
No 222
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=45.03 E-value=52 Score=17.93 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=20.4
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 92 CGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 92 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
.|.|+.++...+... ..+.+..+.++.... ..|...+..|+++|
T Consensus 27 ~~Vit~e~~~~I~a~---~T~~~kar~Lld~l~--~kG~~A~~~F~~~L 70 (82)
T cd08330 27 KKVITQEQYSEVRAE---KTNQEKMRKLFSFVR--SWGASCKDIFYQIL 70 (82)
T ss_pred CCCCCHHHHHHHHcC---CCcHHHHHHHHHHHH--ccCHHHHHHHHHHH
Confidence 355555555544432 223444455554442 24444555555443
No 223
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=45.01 E-value=60 Score=18.63 Aligned_cols=62 Identities=24% Similarity=0.263 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhcc---CCCccCHHHHHHHHHHh
Q 037913 41 LAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMD---GCGCITPKSLKRMLSRL 107 (141)
Q Consensus 41 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~---~~g~I~~~e~~~~l~~~ 107 (141)
...++.-|..+.. +|.++...|-..+.+. ...+-..++|.++-.. ..+.|+.+|++.++..+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~---dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGMK---DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCCc---ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 4455555666544 6788888888888763 3344555666666432 24678888888777654
No 224
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=44.99 E-value=81 Score=20.15 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=45.9
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHH
Q 037913 22 RISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLK 101 (141)
Q Consensus 22 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~ 101 (141)
.|++.+++.-.+.-.....++.+-.++... ..|.++..+|..-+.. .. ....||.+.|.
T Consensus 3 IIdFnelKNKvkdkDiDKFE~YiY~ly~~~---a~Gklsm~dFsk~I~~---------------Ym---eeNNISqeKf~ 61 (186)
T PF12983_consen 3 IIDFNELKNKVKDKDIDKFEEYIYSLYYDV---AEGKLSMADFSKKIME---------------YM---EENNISQEKFL 61 (186)
T ss_pred eecHHHHhhhcccccHHHHHHHHHHHHHHH---hcCcccHHHHHHHHHH---------------HH---HHcCCcHHHHH
Confidence 456666666555444333344444443333 5678888888776653 11 11346666666
Q ss_pred HHHHH----hCCCCCHHHHHHHHHhhCcCC
Q 037913 102 RMLSR----LGQSKSDDECKSMIAYFDLNG 127 (141)
Q Consensus 102 ~~l~~----~~~~~~~~~~~~~~~~~d~~~ 127 (141)
++... .|. .+++++.-++.+..+.
T Consensus 62 niQkk~mERYGf--d~~~iE~q~K~~Gid~ 89 (186)
T PF12983_consen 62 NIQKKFMERYGF--DPSEIEKQMKSMGIDM 89 (186)
T ss_pred HHHHHHHHHhCC--CHHHHHHHHHHcCCCc
Confidence 55433 354 4666777777765543
No 225
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=44.93 E-value=49 Score=17.56 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=22.8
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 93 GCITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 93 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
..-|.+|+...|...|+..+..-+..-++.+.
T Consensus 18 ~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 18 EISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp ---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 46689999999999999999999988777763
No 226
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=44.84 E-value=34 Score=16.37 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHhCCCCCHHHH
Q 037913 24 SPSELQQCVEAIGGELSLAEA 44 (141)
Q Consensus 24 ~~~e~~~~l~~~~~~~~~~~~ 44 (141)
+.+++..+.+..|+.++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 667777777777887776654
No 227
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=44.67 E-value=61 Score=23.18 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=44.3
Q ss_pred HHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 10 RVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 10 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
-+...+|+.+.|.+++--.+.++..+...--.+..+.++... .+.+|-+.+..|.+++..
T Consensus 114 flLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHH
Confidence 344668999999999999888888775545567778888777 566777777777666654
No 228
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=44.62 E-value=56 Score=18.15 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=17.5
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 037913 95 ITPKSLKRMLSRLGQSKSDDECKSMIA 121 (141)
Q Consensus 95 I~~~e~~~~l~~~~~~~~~~~~~~~~~ 121 (141)
|+.+++..+.+-....++++++..+..
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~ 27 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAG 27 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 466677777666677777776555443
No 229
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=44.62 E-value=33 Score=15.50 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHhCCCCCH
Q 037913 96 TPKSLKRMLSRLGQSKSD 113 (141)
Q Consensus 96 ~~~e~~~~l~~~~~~~~~ 113 (141)
|.++++..|...|+..++
T Consensus 5 s~~~L~~wL~~~gi~~~~ 22 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPK 22 (38)
T ss_pred CHHHHHHHHHHcCCCCCC
Confidence 456777777777665443
No 230
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=44.41 E-value=66 Score=18.92 Aligned_cols=51 Identities=8% Similarity=0.121 Sum_probs=38.5
Q ss_pred HHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q 037913 11 VFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVR 66 (141)
Q Consensus 11 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 66 (141)
.|-.+-..++..+|.+++..+|...|.......+..++..+. ..+..+.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 344444566778999999999999999999988888888873 244566554
No 231
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=42.99 E-value=30 Score=15.36 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=11.3
Q ss_pred ccCHHHHHHHHHHhCCCC
Q 037913 94 CITPKSLKRMLSRLGQSK 111 (141)
Q Consensus 94 ~I~~~e~~~~l~~~~~~~ 111 (141)
.++..|++..++..|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 356677777777776543
No 232
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.62 E-value=1e+02 Score=24.17 Aligned_cols=78 Identities=23% Similarity=0.229 Sum_probs=42.6
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC--------CcchHHHHHHHHHHHhhccCCCc
Q 037913 23 ISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGS--------GEEEKMNDLKEAFKMYEMDGCGC 94 (141)
Q Consensus 23 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~--------~~~~~~~~~~~~f~~~D~~~~g~ 94 (141)
++.+++. ......++.++.++.++|. ++|.++-+++..++... ......+....++...|.++.|.
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGY 77 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccce
Confidence 5666665 2222344555666666655 56666666665554431 11122223444566666777777
Q ss_pred cCHHHHHHHHHH
Q 037913 95 ITPKSLKRMLSR 106 (141)
Q Consensus 95 I~~~e~~~~l~~ 106 (141)
+...++...+..
T Consensus 78 ~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 78 ITNEDLEILLLQ 89 (646)
T ss_pred eeecchhHHHHh
Confidence 777777766654
No 233
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=41.86 E-value=72 Score=21.84 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=5.6
Q ss_pred CCcccHHHHH
Q 037913 56 DGLLGFDDFV 65 (141)
Q Consensus 56 ~~~i~~~ef~ 65 (141)
+|.|+-.|..
T Consensus 69 DG~Vse~Ei~ 78 (267)
T PRK09430 69 KGRVTEADIR 78 (267)
T ss_pred CCCcCHHHHH
Confidence 5556655554
No 234
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=41.85 E-value=80 Score=22.11 Aligned_cols=63 Identities=14% Similarity=0.297 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcc---------CCCccCHHHHHHHHHHh---------------CCCCCHHHHHHHHHhhCcC-----CCC
Q 037913 79 DLKEAFKMYEMD---------GCGCITPKSLKRMLSRL---------------GQSKSDDECKSMIAYFDLN-----GDG 129 (141)
Q Consensus 79 ~~~~~f~~~D~~---------~~g~I~~~e~~~~l~~~---------------~~~~~~~~~~~~~~~~d~~-----~~g 129 (141)
....+|..|++. ++-.+|...|.+++-++ ..-+++.++..+.+.+-.| .++
T Consensus 193 ~~leLf~~yn~~khl~lm~~L~~t~ltE~QFaQiiGR~RLYQ~LP~~~qk~lP~ll~tD~qiN~vak~Y~~d~nF~~~~~ 272 (323)
T PF12987_consen 193 KVLELFQNYNPAKHLHLMQTLGDTSLTEHQFAQIIGRMRLYQALPQGEQKRLPRLLITDSQINTVAKAYYNDENFGRKGG 272 (323)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccCcccHHHHHHHHhHHHHHHhCCHhHHhhCCceecchHHHHHHHHHHhcCcccccCCC
Confidence 344455555543 47899999999998654 2235778888888776333 367
Q ss_pred cccHHHHHhhhC
Q 037913 130 VLNFDEFRIMMS 141 (141)
Q Consensus 130 ~i~~~ef~~~l~ 141 (141)
.|+...|..+++
T Consensus 273 ~Is~W~~ynLlT 284 (323)
T PF12987_consen 273 EISMWNFYNLLT 284 (323)
T ss_pred cccHHHHHHHHh
Confidence 799999888763
No 235
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=41.84 E-value=68 Score=21.19 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=43.2
Q ss_pred CCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCc
Q 037913 54 DGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDL 125 (141)
Q Consensus 54 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 125 (141)
+....+...-|++.+....... --+-.|.+|+...+++...++..+.+++.+.+..+.+.-+.
T Consensus 28 ~~~~~~~~SK~lS~vLRH~p~~---------~gl~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 28 NEKERVKLSKFLSGVLRHFPEA---------IGLRLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDK 90 (211)
T ss_pred CcchhhhHHHHHHHHHhcChHH---------cCeeeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCC
Confidence 3444556666666665422111 11235888999999999999999999999988888766543
No 236
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.78 E-value=1.1e+02 Score=20.92 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=23.2
Q ss_pred hccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHh
Q 037913 88 EMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRI 138 (141)
Q Consensus 88 D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 138 (141)
|+..+..|-.+-+..++..+|..+.+-.+-.+.-.++...-+..+.++|+.
T Consensus 75 d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~ 125 (260)
T KOG3077|consen 75 DPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLK 125 (260)
T ss_pred CcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHH
Confidence 444445666666666666665543332222222223333334455555543
No 237
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=41.65 E-value=1.1e+02 Score=23.16 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc---ccHHHHHHHHhcCCcchHHHHH
Q 037913 4 KHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGL---LGFDDFVRLVEGSGEEEKMNDL 80 (141)
Q Consensus 4 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~---i~~~ef~~~~~~~~~~~~~~~~ 80 (141)
..+....+|+.+-+.+...++..++..++.++|..-...+-.+.| ++..+. +.|..++..+.+. -.....+
T Consensus 483 ~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F----~~~a~s~~gv~yl~v~~~i~se--l~D~d~v 556 (612)
T COG5069 483 VLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSF----GDPAGSVSGVFYLDVLKGIHSE--LVDYDLV 556 (612)
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeec----cCCccccccchHHHHHHHHhhh--hcChhhh
Confidence 445566778887677777899999999999987655444434444 333333 4555555554432 1122345
Q ss_pred HHHHHHhh
Q 037913 81 KEAFKMYE 88 (141)
Q Consensus 81 ~~~f~~~D 88 (141)
+..|..++
T Consensus 557 ~~~~~~f~ 564 (612)
T COG5069 557 TRGFTEFD 564 (612)
T ss_pred hhhHHHHH
Confidence 55555554
No 238
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=40.90 E-value=53 Score=16.81 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=11.5
Q ss_pred HHHHHHHHHh--hccCCCccCHHHHHHHHHH
Q 037913 78 NDLKEAFKMY--EMDGCGCITPKSLKRMLSR 106 (141)
Q Consensus 78 ~~~~~~f~~~--D~~~~g~I~~~e~~~~l~~ 106 (141)
+.+..+.+++ +. +...+|.++++.+|..
T Consensus 15 ~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 15 DRIHSMLKMFPKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp HHHHHHHHHH-GGG---TT--HHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-CCCCCCHHHHHHHHHH
Confidence 3444444444 22 3345555555555543
No 239
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=40.52 E-value=53 Score=19.33 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=42.0
Q ss_pred CCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccH
Q 037913 54 DGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNF 133 (141)
Q Consensus 54 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~ 133 (141)
.+...++.+.=+.++...........+...+.-+...+...||.+-...++.-.. .+..-+..+|.++.--+-+
T Consensus 36 ~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~~~~k~IskD~W~~~l~F~~------~~~~dls~Yde~~AWP~li 109 (117)
T PF03556_consen 36 EGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEEKYKKAISKDTWNQFLDFFK------TVDEDLSNYDEEGAWPSLI 109 (117)
T ss_dssp TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHHCT-SEEEHHHHHHHHHHHH------H-HCCHCC--TTSSS-HHH
T ss_pred cccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcCCcCcChhHHHHHHHHHH------hcCccccCCCCCCCCcHHH
Confidence 3445566665555444321111012233333334444667788888887775431 1234566677666667888
Q ss_pred HHHHhhhC
Q 037913 134 DEFRIMMS 141 (141)
Q Consensus 134 ~ef~~~l~ 141 (141)
++|+++++
T Consensus 110 DeFVe~~r 117 (117)
T PF03556_consen 110 DEFVEWLR 117 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88888763
No 240
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=40.48 E-value=1.3e+02 Score=21.42 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=37.0
Q ss_pred HHHHHHH--hCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHH
Q 037913 28 LQQCVEA--IGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRML 104 (141)
Q Consensus 28 ~~~~l~~--~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l 104 (141)
|...+.- +|+......+....+ .|.|+.+|=+..+.........+.+...++.++ ||.+||..++
T Consensus 276 ~~~y~~~~KfG~~~~~~~~s~~IR------~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 276 FHDYLKYLKFGFGRATDHASIDIR------SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HHHHHHHhhcCCCcCchHHHHHHH------cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 4444333 466555444444442 467888887777766433333456777777776 5566666553
No 241
>COG5562 Phage envelope protein [General function prediction only]
Probab=39.81 E-value=21 Score=21.63 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=24.5
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 91 GCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 91 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
.+|.|...-.+.+..-. ...+. ..+...+..+..|+.||++|++.+
T Consensus 53 ~~~~Il~~g~k~~~~V~-~~~n~---~~i~~al~~~qsGqttF~ef~~~l 98 (137)
T COG5562 53 SDGVILIKGVKKVVGVA-EVFNT---TLIKTALRRHQSGQTTFEEFCSAL 98 (137)
T ss_pred cCCEEEeecccccccee-cccCH---HHHHHHHHHHhcCCccHHHHHHHH
Confidence 34555555544443221 11122 233344455678899999998754
No 242
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=38.02 E-value=82 Score=18.23 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=27.6
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 94 CITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 94 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
.||.+.+..+|...|....+..+..+...+.
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 8999999999999999888888888888774
No 243
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=37.82 E-value=34 Score=22.05 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 037913 2 KEKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAV 48 (141)
Q Consensus 2 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~ 48 (141)
-++.+.+++.|..||+..--.++.+++..++...|+--....++.+.
T Consensus 51 L~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 51 LKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred HHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 35678889999999998888889999998888877655555444443
No 244
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=36.99 E-value=1.2e+02 Score=19.84 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=47.9
Q ss_pred CCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCH
Q 037913 18 NGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITP 97 (141)
Q Consensus 18 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~ 97 (141)
|=||.||.++....+... .-..++..+.. .--++.+++.+-...+......+..+.+..+.+..-.+. ..
T Consensus 9 DFDGTITl~Ds~~~itdt---f~~~e~k~l~~---~vls~tiS~rd~~g~mf~~i~~s~~Eile~llk~i~Idp----~f 78 (220)
T COG4359 9 DFDGTITLNDSNDYITDT---FGPGEWKALKD---GVLSKTISFRDGFGRMFGSIHSSLEEILEFLLKDIKIDP----GF 78 (220)
T ss_pred cCCCceEecchhHHHHhc---cCchHHHHHHH---HHhhCceeHHHHHHHHHHhcCCCHHHHHHHHHhhcccCc----cH
Confidence 346778877777665542 11223334433 334566777776655554333333333333333232222 35
Q ss_pred HHHHHHHHHhCCC------CCHHHHHHHHHhh
Q 037913 98 KSLKRMLSRLGQS------KSDDECKSMIAYF 123 (141)
Q Consensus 98 ~e~~~~l~~~~~~------~~~~~~~~~~~~~ 123 (141)
.||..+++..+++ .++.-+..+++.+
T Consensus 79 Kef~e~ike~di~fiVvSsGm~~fI~~lfe~i 110 (220)
T COG4359 79 KEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGI 110 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHHHHHHHhh
Confidence 5666666655433 1445556666555
No 245
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=36.87 E-value=98 Score=18.77 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=26.6
Q ss_pred CCCcccHHHHHHHHhcC--------CcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHH
Q 037913 55 GDGLLGFDDFVRLVEGS--------GEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSR 106 (141)
Q Consensus 55 ~~~~i~~~ef~~~~~~~--------~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~ 106 (141)
.+|.|+..+|+..+... ........+..+|+.+ =|....+..|+......
T Consensus 41 rng~IsVreFVr~La~S~~yr~~f~~~~~~~R~iEl~~khl--LGR~p~~~~Ei~~~~~i 98 (131)
T PF00427_consen 41 RNGQISVREFVRALAKSELYRKRFFEPNSNYRFIELAFKHL--LGRAPYNQAEISAYSQI 98 (131)
T ss_dssp HTTSS-HHHHHHHHHTSHHHHHHHTTTS-HHHHHHHHHHHH--CSS--SSHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHcCHHHHHHHcccccchHHHHHHHHHH--hCCCCCCHHHHHHHHHH
Confidence 36789999999888751 1122333455555555 33445556666655443
No 246
>PRK00441 argR arginine repressor; Provisional
Probab=36.75 E-value=1e+02 Score=19.02 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=29.1
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 91 GCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 91 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
..+..+.+|+...|...|+..+..-++.-+..+.
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~ 48 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELK 48 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcC
Confidence 4578899999999999999999999988777654
No 247
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=36.27 E-value=43 Score=14.43 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=8.4
Q ss_pred CCccCHHHHHHHH
Q 037913 92 CGCITPKSLKRML 104 (141)
Q Consensus 92 ~g~I~~~e~~~~l 104 (141)
.|.||.+||...-
T Consensus 14 ~G~IseeEy~~~k 26 (31)
T PF09851_consen 14 KGEISEEEYEQKK 26 (31)
T ss_pred cCCCCHHHHHHHH
Confidence 4677777776543
No 248
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=36.12 E-value=70 Score=17.52 Aligned_cols=20 Identities=20% Similarity=0.507 Sum_probs=7.6
Q ss_pred HHHHHhhCcCCCCcccHHHH
Q 037913 117 KSMIAYFDLNGDGVLNFDEF 136 (141)
Q Consensus 117 ~~~~~~~d~~~~g~i~~~ef 136 (141)
+.+-+.++..+...|+|+|.
T Consensus 52 ~sl~kL~~La~~N~v~feeL 71 (82)
T PF11020_consen 52 DSLSKLYKLAKENNVSFEEL 71 (82)
T ss_pred HHHHHHHHHHHHcCCCHHHH
Confidence 33333333333334444443
No 249
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=36.06 E-value=66 Score=16.53 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=7.4
Q ss_pred CccCHHHHHHHHHHhC
Q 037913 93 GCITPKSLKRMLSRLG 108 (141)
Q Consensus 93 g~I~~~e~~~~l~~~~ 108 (141)
+.++...+++++...|
T Consensus 43 ~~~~~~~l~~~lD~~g 58 (64)
T PF09494_consen 43 RKVDPSKLKEWLDSQG 58 (64)
T ss_pred ceeCHHHHHHHHHHCC
Confidence 3444444444444443
No 250
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.04 E-value=83 Score=18.56 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=22.3
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037913 95 ITPKSLKRMLSRLGQSKSDDECKSMIAYF 123 (141)
Q Consensus 95 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 123 (141)
-|..|++.++..-+..+++++++.++.-.
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 36788888888888888888887776543
No 251
>PLN02859 glutamine-tRNA ligase
Probab=35.73 E-value=2.4e+02 Score=22.94 Aligned_cols=51 Identities=12% Similarity=0.228 Sum_probs=36.6
Q ss_pred CcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037913 72 GEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYF 123 (141)
Q Consensus 72 ~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 123 (141)
........+.++++.+...+...++..+|...+- +|..++++++...+..+
T Consensus 81 gkIkT~~Ql~AA~kYl~~~~~~~~d~~~Fek~CG-VGV~VT~EqI~~~V~~~ 131 (788)
T PLN02859 81 SKIKTPAQLEAAFSFFSSTGPESFDLNKFEEACG-VGVVVSPEDIEAAVNEV 131 (788)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCccCHHHHHHhCC-CCEEECHHHHHHHHHHH
Confidence 3334456788888888666666888888887763 37778999987766654
No 252
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=35.15 E-value=84 Score=17.45 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=19.5
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 037913 94 CITPKSLKRMLSRLGQSKSDDECKSMIA 121 (141)
Q Consensus 94 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~ 121 (141)
.|+.++++.+.+-..+.++++++..+..
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~ 29 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAG 29 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3677788887777777777777555443
No 253
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=34.62 E-value=1e+02 Score=18.20 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=12.6
Q ss_pred HHHHHHhhCcCCCCcccHHHHHhhh
Q 037913 116 CKSMIAYFDLNGDGVLNFDEFRIMM 140 (141)
Q Consensus 116 ~~~~~~~~d~~~~g~i~~~ef~~~l 140 (141)
...++..+. +|.||.++-.+.|
T Consensus 91 ~~~IL~~L~---~GeIs~eeA~~~L 112 (113)
T PF09862_consen 91 RKEILDKLE---KGEISVEEALEIL 112 (113)
T ss_pred HHHHHHHHH---cCCCCHHHHHHHh
Confidence 445555553 5666666665554
No 254
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=34.56 E-value=98 Score=18.06 Aligned_cols=54 Identities=9% Similarity=0.194 Sum_probs=40.4
Q ss_pred HHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 037913 11 VFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVE 69 (141)
Q Consensus 11 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 69 (141)
.|-.+-..++..+|.+++..+|...|..........+...+.. .+..+.+....
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~ 59 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGK 59 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhH
Confidence 3444445677789999999999999999988888888887732 45666665443
No 255
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=34.35 E-value=1.6e+02 Score=21.45 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=49.2
Q ss_pred HhhhCCCCCCccCHHHHHHHHHHhCCCC-------CHH----HHHHHHHHhCCCCCCcccHHHHHHHHhc---CCcchHH
Q 037913 12 FNHFDSNGDRRISPSELQQCVEAIGGEL-------SLA----EAEAAVEFLDADGDGLLGFDDFVRLVEG---SGEEEKM 77 (141)
Q Consensus 12 f~~~d~~~~g~i~~~e~~~~l~~~~~~~-------~~~----~~~~l~~~~d~~~~~~i~~~ef~~~~~~---~~~~~~~ 77 (141)
|..+|.+....++.++-..++...+++. +.. .+..+...++..+...|-+.+--..... .+.....
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~~~~~KYtT~~~n~ 242 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMRVKPLKYTTSYANI 242 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccccCCcceeecCccCh
Confidence 4445556688999999999999887653 233 3345555665554333333221111111 1233344
Q ss_pred HHHHHHHHHhhccCCCccCHHHHHHHHHH
Q 037913 78 NDLKEAFKMYEMDGCGCITPKSLKRMLSR 106 (141)
Q Consensus 78 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~ 106 (141)
..++.+|+.+-.-+-++....=++.++..
T Consensus 243 ~Di~~~~~~~~d~g~df~~sRi~Re~f~~ 271 (374)
T TIGR01209 243 NDIKYAARYFFELGRDFFFSRILREAFQS 271 (374)
T ss_pred HHHHHHHhhccccCchHHHHHHHHHHHHH
Confidence 45666666554444444444444444433
No 256
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.06 E-value=81 Score=23.18 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=36.7
Q ss_pred HHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHH
Q 037913 80 LKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFR 137 (141)
Q Consensus 80 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 137 (141)
...+|-.+. .-+|.||-..-+..+. +..+....+-.+++..|.+.+|.++=+||.
T Consensus 446 yde~fy~l~-p~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 446 YDEIFYTLS-PVNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hHhhhhccc-ccCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 344454443 2356676665554443 445667778888888999999998888885
No 257
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=33.93 E-value=77 Score=16.67 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=5.8
Q ss_pred CccCHHHHHHHH
Q 037913 93 GCITPKSLKRML 104 (141)
Q Consensus 93 g~I~~~e~~~~l 104 (141)
|.++.+|...+.
T Consensus 26 ~vlt~~e~~~i~ 37 (80)
T cd01671 26 GVLTEEEYEKIR 37 (80)
T ss_pred CCCCHHHHHHHH
Confidence 455555544433
No 258
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=33.90 E-value=85 Score=17.14 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=11.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHH
Q 037913 99 SLKRMLSRLGQSKSDDECKSM 119 (141)
Q Consensus 99 e~~~~l~~~~~~~~~~~~~~~ 119 (141)
|+..+|+.+|..+++++..-+
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL 41 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFL 41 (78)
T ss_dssp HHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 556678888999998875443
No 259
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=33.87 E-value=1e+02 Score=17.97 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=28.1
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCc
Q 037913 94 CITPKSLKRMLSRLGQSKSDDECKSMIAYFDL 125 (141)
Q Consensus 94 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 125 (141)
.||.+.+..+|...|....+..+..+...+..
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~g 47 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALEE 47 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC
Confidence 79999999999999998888888888888743
No 260
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=33.72 E-value=92 Score=17.51 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=6.2
Q ss_pred hCcCCCCcccHHHH
Q 037913 123 FDLNGDGVLNFDEF 136 (141)
Q Consensus 123 ~d~~~~g~i~~~ef 136 (141)
+..++.+.|+...|
T Consensus 66 ~~~~~~~~Ip~~~~ 79 (90)
T PF02337_consen 66 YAEQGPEKIPIQAF 79 (90)
T ss_dssp HHHCSTTTS-CHHH
T ss_pred HHHhCCCCCChhHH
Confidence 33344555554444
No 261
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=33.68 E-value=19 Score=17.77 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=7.5
Q ss_pred CCccCHHHHHHHHH
Q 037913 20 DRRISPSELQQCVE 33 (141)
Q Consensus 20 ~g~i~~~e~~~~l~ 33 (141)
++.+|..|+...+.
T Consensus 20 ~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 20 GGPLSLSEIAARLP 33 (51)
T ss_dssp TS-BEHHHHHHTST
T ss_pred CCCCCHHHHHHHcC
Confidence 46666666655444
No 262
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=33.46 E-value=74 Score=16.33 Aligned_cols=17 Identities=41% Similarity=0.468 Sum_probs=8.0
Q ss_pred CCCCCHHHHHHHHHHhC
Q 037913 36 GGELSLAEAEAAVEFLD 52 (141)
Q Consensus 36 ~~~~~~~~~~~l~~~~d 52 (141)
|..++.+++..++..+-
T Consensus 12 g~~Ls~~e~~~~~~~i~ 28 (66)
T PF02885_consen 12 GEDLSREEAKAAFDAIL 28 (66)
T ss_dssp T----HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 45566666666666553
No 263
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=33.40 E-value=1.2e+02 Score=18.66 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=28.6
Q ss_pred cCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCc
Q 037913 90 DGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDL 125 (141)
Q Consensus 90 ~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 125 (141)
......|.+|+...|+..|+.++.+-+...++.+..
T Consensus 12 ~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elgl 47 (146)
T TIGR01529 12 TEEKISTQEELVALLKAEGIEVTQATVSRDLRELGA 47 (146)
T ss_pred HcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCC
Confidence 344678899999999989999998888777777643
No 264
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=33.21 E-value=70 Score=21.95 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 037913 41 LAEAEAAVEFLDADGDGLLGFDDFVRLVE 69 (141)
Q Consensus 41 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 69 (141)
...++.++..+-..+--..+..+|...+.
T Consensus 101 T~vmk~~~~fL~~k~~~~~~~~~Fk~~L~ 129 (265)
T PF09412_consen 101 TKVMKLAHQFLVSKGLAPSDEAEFKKQLK 129 (265)
T ss_dssp SHHHHHHHHHHHHTTSS-SSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34444444444333323344444444443
No 265
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=33.08 E-value=10 Score=23.06 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=9.2
Q ss_pred cCCCccCHHHHHHHHHH
Q 037913 90 DGCGCITPKSLKRMLSR 106 (141)
Q Consensus 90 ~~~g~I~~~e~~~~l~~ 106 (141)
+.++.|+.+-+...|..
T Consensus 37 ~~d~~iD~~~L~~yL~g 53 (140)
T PF13075_consen 37 NDDQSIDFERLAPYLGG 53 (140)
T ss_pred cCCceecHHHHhhhcCC
Confidence 34555666555555543
No 266
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=32.86 E-value=76 Score=16.29 Aligned_cols=30 Identities=10% Similarity=0.251 Sum_probs=17.3
Q ss_pred HHHHHHhhccCCCccCHHHHHHHHHHhCCC
Q 037913 81 KEAFKMYEMDGCGCITPKSLKRMLSRLGQS 110 (141)
Q Consensus 81 ~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~ 110 (141)
..+++.++.+...-++.++...-.+..|.+
T Consensus 7 ~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N 36 (69)
T PF00690_consen 7 EEVLKRLNTSSSQGLSSEEVEERRKKYGPN 36 (69)
T ss_dssp HHHHHHHTTBTSSBBTHHHHHHHHHHHSSS
T ss_pred HHHHHHHCcCCCCCCCHHHHHHHHHhcccc
Confidence 345555555555556666666666666543
No 267
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.61 E-value=1.3e+02 Score=22.14 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=15.6
Q ss_pred HHHHHHHHhhccCCCccCHHHHHH
Q 037913 79 DLKEAFKMYEMDGCGCITPKSLKR 102 (141)
Q Consensus 79 ~~~~~f~~~D~~~~g~I~~~e~~~ 102 (141)
.+-.+|+..|.|++|.++.+||.-
T Consensus 478 vlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 478 VLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred HHHhhhhhhcCCcccCcCHHHHHH
Confidence 355666666777777777766653
No 268
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=32.51 E-value=1.1e+02 Score=17.92 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=31.4
Q ss_pred HHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 84 FKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 84 f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
+..+..-+. -||.+.+..+++..|..+.+.-+..++..+.
T Consensus 7 ~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLe 46 (109)
T COG2058 7 YLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALE 46 (109)
T ss_pred HHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc
Confidence 344433333 8999999999999999998888888888775
No 269
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=32.48 E-value=1e+02 Score=17.72 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=26.6
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 91 GCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 91 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
..-.||.+++..++...|....+.-+..+++.+.
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~ 47 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKALE 47 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 3347999999999999998887777777766663
No 270
>PRK03341 arginine repressor; Provisional
Probab=32.42 E-value=1.2e+02 Score=19.31 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=29.7
Q ss_pred cCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 90 DGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 90 ~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
...+..+.+|+...|+..|+..+..-+..-++.+.
T Consensus 25 ~~~~i~tQ~eL~~~L~~~Gi~vTQaTiSRDl~eL~ 59 (168)
T PRK03341 25 SRQSVRSQAELAALLADEGIEVTQATLSRDLDELG 59 (168)
T ss_pred HHCCCccHHHHHHHHHHcCCcccHHHHHHHHHHhc
Confidence 44578899999999999999999999987777664
No 271
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=31.70 E-value=1e+02 Score=17.41 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=5.6
Q ss_pred CCccCHHHHHHHH
Q 037913 92 CGCITPKSLKRML 104 (141)
Q Consensus 92 ~g~I~~~e~~~~l 104 (141)
.|.||.++...+-
T Consensus 33 ~gIlT~~~~e~I~ 45 (94)
T cd08327 33 EGILTESHVEEIE 45 (94)
T ss_pred CCCCCHHHHHHHH
Confidence 3444444444333
No 272
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=31.20 E-value=82 Score=16.26 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=13.6
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037913 92 CGCITPKSLKRMLSRLGQSKSDDECKSMIAYF 123 (141)
Q Consensus 92 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 123 (141)
+..+|..++...+...|..++..-+...+...
T Consensus 11 ~p~~s~~~i~~~l~~~~~~vS~~TI~r~L~~~ 42 (72)
T PF01498_consen 11 NPRISAREIAQELQEAGISVSKSTIRRRLREA 42 (72)
T ss_dssp -----HHHHHHHT---T--S-HHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHccCCcCHHHHHHHHHHc
Confidence 34466677666665556666666666666554
No 273
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=30.89 E-value=1e+02 Score=17.14 Aligned_cols=10 Identities=10% Similarity=0.026 Sum_probs=3.9
Q ss_pred CHHHHHHHHH
Q 037913 96 TPKSLKRMLS 105 (141)
Q Consensus 96 ~~~e~~~~l~ 105 (141)
-...|..+|+
T Consensus 67 AF~~F~~aL~ 76 (90)
T cd08332 67 AFSAFCEALR 76 (90)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 274
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=30.79 E-value=2.4e+02 Score=22.93 Aligned_cols=60 Identities=8% Similarity=0.044 Sum_probs=42.3
Q ss_pred HHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 037913 9 ERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVE 69 (141)
Q Consensus 9 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 69 (141)
.-+.+.||+..+|.|..-.|+..+-.+.....++....+|......+... +...|-.++.
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~-~q~~l~lLL~ 532 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQC-DQRRLGLLLH 532 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhH-HHHHHHHHHH
Confidence 34568899999999999999987777654455666678998886555433 3555554443
No 275
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=30.39 E-value=19 Score=23.24 Aligned_cols=45 Identities=11% Similarity=0.341 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 037913 76 KMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMI 120 (141)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 120 (141)
..+.++.+|.-||+..--..+.+++.+.+...++-.....++.++
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi 96 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAII 96 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHH
Confidence 566899999999998888888999999887766544444443333
No 276
>PRK08181 transposase; Validated
Probab=30.07 E-value=1.5e+02 Score=20.40 Aligned_cols=11 Identities=0% Similarity=-0.076 Sum_probs=4.9
Q ss_pred ccCHHHHHHHH
Q 037913 94 CITPKSLKRML 104 (141)
Q Consensus 94 ~I~~~e~~~~l 104 (141)
.++..|+...|
T Consensus 39 ~~~~~e~L~~l 49 (269)
T PRK08181 39 GWPAARFLAAI 49 (269)
T ss_pred CCCHHHHHHHH
Confidence 34444444443
No 277
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=29.87 E-value=73 Score=15.14 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhCc
Q 037913 98 KSLKRMLSRLGQSKSDDECKSMIAYFDL 125 (141)
Q Consensus 98 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 125 (141)
+|...+|..+|+ ++.++...+..+..
T Consensus 4 ~d~~~AL~~LGy--~~~e~~~av~~~~~ 29 (47)
T PF07499_consen 4 EDALEALISLGY--SKAEAQKAVSKLLE 29 (47)
T ss_dssp HHHHHHHHHTTS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHhhc
Confidence 466667777775 57777777776643
No 278
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=29.75 E-value=32 Score=26.86 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=42.9
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHhcCC------c---chHHHHHHHHHHHhhccCC-----------------------
Q 037913 45 EAAVEFLDADGDGLLGFDDFVRLVEGSG------E---EEKMNDLKEAFKMYEMDGC----------------------- 92 (141)
Q Consensus 45 ~~l~~~~d~~~~~~i~~~ef~~~~~~~~------~---~~~~~~~~~~f~~~D~~~~----------------------- 92 (141)
..++...|.+.++..+|.+|..+..... . .+-..+...+|..+|.+++
T Consensus 440 ~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s~ 519 (975)
T KOG2419|consen 440 KRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKSF 519 (975)
T ss_pred hhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccccc
Confidence 4556667888888888888876654411 1 1112235667888888887
Q ss_pred CccCHHHHHHHHHH
Q 037913 93 GCITPKSLKRMLSR 106 (141)
Q Consensus 93 g~I~~~e~~~~l~~ 106 (141)
|.++.+|+..+++.
T Consensus 520 ~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 520 GVVTVDELVALLAL 533 (975)
T ss_pred CeeEHHHHHHHHHH
Confidence 99999999888863
No 279
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=29.66 E-value=35 Score=18.58 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=19.1
Q ss_pred HHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 037913 47 AVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYE 88 (141)
Q Consensus 47 l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D 88 (141)
++..+..+..+.++..+-...+. ......+..+|..+.
T Consensus 42 il~~w~~n~~~~lt~~~~~~~i~----~~d~~~~~ri~~FL~ 79 (86)
T PF04433_consen 42 ILAEWRKNPNKYLTKTDARKLIK----GIDVNKIRRIYDFLE 79 (86)
T ss_dssp HHHHHHHHTTS---HHHHHHHTT----SSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHcc----ccCHHHHHHHHHHHH
Confidence 34444455666777777766666 113445566665554
No 280
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=29.54 E-value=1.1e+02 Score=17.28 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=20.2
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 037913 94 CITPKSLKRMLSRLGQSKSDDECKSMIAY 122 (141)
Q Consensus 94 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 122 (141)
.|+.++++.+.+-....+++++++.+...
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~ 30 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQ 30 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHH
Confidence 46778888877777777777776655544
No 281
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=29.47 E-value=1.2e+02 Score=17.65 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH
Q 037913 97 PKSLKRMLSRLGQSKSDDECKSMIA 121 (141)
Q Consensus 97 ~~e~~~~l~~~~~~~~~~~~~~~~~ 121 (141)
.+|++.++......+++++++.++.
T Consensus 81 ~dElrai~~~~~~~~~~e~l~~ILd 105 (112)
T PRK14981 81 RDELRAIFAKERYTLSPEELDEILD 105 (112)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4444444444444445555544443
No 282
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=29.30 E-value=1.1e+02 Score=17.01 Aligned_cols=12 Identities=0% Similarity=0.039 Sum_probs=5.2
Q ss_pred CCccCHHHHHHH
Q 037913 92 CGCITPKSLKRM 103 (141)
Q Consensus 92 ~g~I~~~e~~~~ 103 (141)
+|.|+.++...+
T Consensus 27 n~~it~E~y~~V 38 (85)
T cd08324 27 NDYFSTEDAEIV 38 (85)
T ss_pred cCCccHHHHHHH
Confidence 344444444433
No 283
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=28.80 E-value=1.8e+02 Score=19.44 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=19.3
Q ss_pred CCCccCHHHHHHH-HHHhCCC---CCHHHHHHHHHHhCCCCCC
Q 037913 19 GDRRISPSELQQC-VEAIGGE---LSLAEAEAAVEFLDADGDG 57 (141)
Q Consensus 19 ~~g~i~~~e~~~~-l~~~~~~---~~~~~~~~l~~~~d~~~~~ 57 (141)
+.|.|+.+|+..- ++.-+.. ++.+++.+....+..-++|
T Consensus 113 nGGlislqel~~~l~~~R~~~~e~vt~dD~lrAi~kLk~LG~g 155 (249)
T KOG3341|consen 113 NGGLISLQELCNHLLQRRKKDHEAVTEDDLLRAIDKLKVLGSG 155 (249)
T ss_pred cCCeeeHHHHHHHHHHHhcccchhccHHHHHHHHHHhhccCCC
Confidence 4456666666662 2222222 4555555555555444443
No 284
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=28.25 E-value=1.2e+02 Score=17.11 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=22.6
Q ss_pred HHHHHHHhhccCCCccCHHHHHHHHHHhCCC
Q 037913 80 LKEAFKMYEMDGCGCITPKSLKRMLSRLGQS 110 (141)
Q Consensus 80 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~ 110 (141)
...+.......+.-+|..+|+..++...|..
T Consensus 57 ~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 57 AEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred HHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 3444555566777899999999998887643
No 285
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=28.08 E-value=96 Score=15.97 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 037913 5 HQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVE 69 (141)
Q Consensus 5 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 69 (141)
...+.++.... .+.+|.++..++...+.... ..++...-|.-++.+|+..+.
T Consensus 7 ~~~l~~ll~~~-~~~~g~v~ls~l~~~~~~~~------------~~f~~~~yG~~~l~~ll~~~~ 58 (74)
T PF12872_consen 7 KKLLRELLESQ-KGEDGWVSLSQLGQEYKKKY------------PDFDPRDYGFSSLSELLESLP 58 (74)
T ss_dssp HHHHHHHHHHT-CTTTSSEEHHHHHHHHHHHH------------TT--TCCTTSSSHHHHHHT-T
T ss_pred HHHHHHHHHhC-cCCCceEEHHHHHHHHHHHC------------CCCCccccCCCcHHHHHHhCC
Confidence 34455555333 23367888888877665432 455667778888888886543
No 286
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=28.04 E-value=61 Score=14.04 Aligned_cols=11 Identities=9% Similarity=0.510 Sum_probs=5.4
Q ss_pred cCHHHHHHHHH
Q 037913 95 ITPKSLKRMLS 105 (141)
Q Consensus 95 I~~~e~~~~l~ 105 (141)
||.+|++.+|.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 56666666554
No 287
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=27.82 E-value=47 Score=17.94 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=13.7
Q ss_pred hCcCCCCcccHHHHHhh
Q 037913 123 FDLNGDGVLNFDEFRIM 139 (141)
Q Consensus 123 ~d~~~~g~i~~~ef~~~ 139 (141)
...|..|.||++.|+..
T Consensus 11 ~~~n~~G~iTl~gfLa~ 27 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQ 27 (76)
T ss_pred eEEcCCCcCcHHHHHHH
Confidence 45688899999999864
No 288
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=27.65 E-value=1.3e+02 Score=17.33 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=22.9
Q ss_pred ccCCCccCHHH----HHHHHHHhCCCCCHHHHHHHHHhh
Q 037913 89 MDGCGCITPKS----LKRMLSRLGQSKSDDECKSMIAYF 123 (141)
Q Consensus 89 ~~~~g~I~~~e----~~~~l~~~~~~~~~~~~~~~~~~~ 123 (141)
..++|.--.++ +...|...|+++++++++.+++..
T Consensus 62 ~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 62 EGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33355555443 334566679999999998887664
No 289
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=27.48 E-value=86 Score=23.02 Aligned_cols=65 Identities=6% Similarity=-0.021 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHH
Q 037913 38 ELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRM 103 (141)
Q Consensus 38 ~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~ 103 (141)
.++..+....++..-. ...-|.|..|.+.+........--+..++=..+|...++.||.=||--+
T Consensus 171 riTKadA~~FWr~~fg-~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvF 235 (563)
T KOG1785|consen 171 RITKADAAEFWRKHFG-KKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVF 235 (563)
T ss_pred eeccccHHHHHHHhcC-CcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhH
Confidence 3455555555555432 3356888999888877544443334444555677778888887776543
No 290
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=27.41 E-value=1.7e+02 Score=18.69 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=22.3
Q ss_pred CCcccHHHHHHHHhcC--CcchHHHHHHHHHHHhh
Q 037913 56 DGLLGFDDFVRLVEGS--GEEEKMNDLKEAFKMYE 88 (141)
Q Consensus 56 ~~~i~~~ef~~~~~~~--~~~~~~~~~~~~f~~~D 88 (141)
..+++.++|+..+... ...-..+.+..+|..+-
T Consensus 149 k~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 183 (187)
T smart00222 149 KKKMTLEDFIKNVRGSNDGEDLPREFLEELYDSIK 183 (187)
T ss_pred CCCCCHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 4579999999988763 23344566777777653
No 291
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=27.39 E-value=54 Score=14.78 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=10.8
Q ss_pred ccCHHHHHHHHHHhCCCC
Q 037913 94 CITPKSLKRMLSRLGQSK 111 (141)
Q Consensus 94 ~I~~~e~~~~l~~~~~~~ 111 (141)
.++..+++.+|...|+..
T Consensus 3 sltV~~Lk~iL~~~~I~~ 20 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEF 20 (35)
T ss_dssp T--SHHHHHHHHHHT---
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 467788999998887654
No 292
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=27.38 E-value=2e+02 Score=19.50 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=21.1
Q ss_pred ccHHHHHHHHhcCCcc---hHHHHHHHHHHHhhccCCCccCHHHHHHHHHHh
Q 037913 59 LGFDDFVRLVEGSGEE---EKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL 107 (141)
Q Consensus 59 i~~~ef~~~~~~~~~~---~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 107 (141)
-++..|+.+++..... -.. .-...|..+...|. .++.+++..+|..+
T Consensus 6 ~e~~~FL~W~c~~V~~~NvLS~-~El~~~~~L~~~Gk-iLeg~~Ld~aL~~~ 55 (256)
T PF14932_consen 6 EEFESFLDWFCSNVNESNVLSE-EELQAFEELQKSGK-ILEGEALDEALKTI 55 (256)
T ss_pred ccHHHHHHHHHccCChhccCCH-HHHHHHHHHHHcCC-cCCHHHHHHHHHHc
Confidence 3456666666652111 111 11223444444444 55555555555544
No 293
>PTZ00315 2'-phosphotransferase; Provisional
Probab=27.27 E-value=1.3e+02 Score=23.32 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=30.1
Q ss_pred hccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 88 EMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 88 D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
..+.+|++..+++.+..+.-+..++.+.+..+++.-+
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~nd 435 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSD 435 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCC
Confidence 4678999999999998877677788998888886643
No 294
>COG1158 Rho Transcription termination factor [Transcription]
Probab=26.87 E-value=97 Score=22.43 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=47.5
Q ss_pred ccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCC------ccCHHHHHHHH--HHhCCCCCHHHH-HHHHHhhCcCCCC
Q 037913 59 LGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCG------CITPKSLKRML--SRLGQSKSDDEC-KSMIAYFDLNGDG 129 (141)
Q Consensus 59 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g------~I~~~e~~~~l--~~~~~~~~~~~~-~~~~~~~d~~~~g 129 (141)
|=|+||.-.=.+...-++.-.=+.+|-++|..++| .++.++++.++ +.+=.++++.++ +.++..+...++.
T Consensus 332 VIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRKEeLLl~~~~l~k~w~lRr~l~~md~~~a~e~li~klk~Tk~N 411 (422)
T COG1158 332 VIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLSPDELQKMWVLRRILSPMDEIDAIEFLIDKLKKTKTN 411 (422)
T ss_pred hhhhhhcCCCceEEEEhhhhhhcccccceecccCCcchHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccccH
Confidence 44666654333322223333456789999999988 47888888765 444334555544 6677777555443
Q ss_pred cccHHHHHhhh
Q 037913 130 VLNFDEFRIMM 140 (141)
Q Consensus 130 ~i~~~ef~~~l 140 (141)
++|+..|
T Consensus 412 ----~eF~~~m 418 (422)
T COG1158 412 ----DEFLEQM 418 (422)
T ss_pred ----HHHHHHh
Confidence 6776665
No 295
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=26.68 E-value=1.1e+02 Score=16.28 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHH
Q 037913 61 FDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLS 105 (141)
Q Consensus 61 ~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~ 105 (141)
..+++..+- .+.-.+.+...-+.+.++.|+.+++.+++-
T Consensus 28 ~~eyl~iFV------~EAv~Ra~~~a~~e~~~~~le~e~LEki~p 66 (72)
T PF09415_consen 28 SAEYLRIFV------REAVARAAEQAEAEGDEGFLEVEHLEKILP 66 (72)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHTT-SSEE-HHHHHHHCH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 445555554 233334444344444444599999888753
No 296
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=26.15 E-value=1.2e+02 Score=16.63 Aligned_cols=27 Identities=15% Similarity=-0.045 Sum_probs=13.7
Q ss_pred HHHhhccCCCccCHHHHHHHHHHhCCC
Q 037913 84 FKMYEMDGCGCITPKSLKRMLSRLGQS 110 (141)
Q Consensus 84 f~~~D~~~~g~I~~~e~~~~l~~~~~~ 110 (141)
....+.+.+|+|..+-+..+=+--...
T Consensus 29 ~~~~~~~~dG~Vpl~~i~~F~rmk~lt 55 (82)
T cd08032 29 REQIEKSRDGYIDISLLVSFNKMKKLT 55 (82)
T ss_pred HHHhcCCCCCCEeHHHHhcchHHHHHc
Confidence 344455566666666555444333333
No 297
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.97 E-value=1.3e+02 Score=16.93 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=48.4
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHH
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFK 85 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~ 85 (141)
+.+...|..+- ..|+..+...+.+.+| +++.++..+-..... +.+ ....++.
T Consensus 4 ~~l~~~f~~i~----~~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~~------~~e----------------q~~qmL~ 55 (96)
T cd08315 4 ETLRRSFDHFI----KEVPFDSWNRLMRQLG--LSENEIDVAKANERV------TRE----------------QLYQMLL 55 (96)
T ss_pred hHHHHHHHHHH----HHCCHHHHHHHHHHcC--CCHHHHHHHHHHCCC------CHH----------------HHHHHHH
Confidence 34455555542 2466777777777776 456666666544311 112 2222223
Q ss_pred HhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 037913 86 MYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMI 120 (141)
Q Consensus 86 ~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 120 (141)
.+-...-..-|...+..+|..++.....+.++..+
T Consensus 56 ~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 56 TWVNKTGRKASVNTLLDALEAIGLRLAKESIQDEL 90 (96)
T ss_pred HHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHH
Confidence 33222222456788888888888877777775543
No 298
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=25.95 E-value=69 Score=23.75 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037913 40 SLAEAEAAVEFLDADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 40 ~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 70 (141)
..+.+..+-+.+|-+.+|.|+.+|--.++..
T Consensus 66 g~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 66 GYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred hHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 3344455555555555555555555555543
No 299
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=25.82 E-value=1.7e+02 Score=21.02 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=16.6
Q ss_pred CCCCCccCHHHHHHHHHHhCCC
Q 037913 17 SNGDRRISPSELQQCVEAIGGE 38 (141)
Q Consensus 17 ~~~~g~i~~~e~~~~l~~~~~~ 38 (141)
.++.+.++..+-..++..++.+
T Consensus 136 ~~~~~~lp~~eR~~lLe~lg~~ 157 (342)
T cd07894 136 KNTGRPLPVEERRELLEKYGLP 157 (342)
T ss_pred cCCCCCCCHHHHHHHHHhcCCC
Confidence 4445678899988888888654
No 300
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=25.76 E-value=1.3e+02 Score=16.69 Aligned_cols=69 Identities=10% Similarity=0.053 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCC
Q 037913 38 ELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQS 110 (141)
Q Consensus 38 ~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~ 110 (141)
.++..-+.++.+......-+.-.+++....+.. --++-++.+-......+.-+|+.+|+.-+++..|.+
T Consensus 13 gi~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~----~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 13 GITKPAIRRLARRGGVKRISGGVYDEVRNVLKS----YLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred cCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 356666666666543222222225555555443 122233444444455666789999999999988754
No 301
>PF13592 HTH_33: Winged helix-turn helix
Probab=25.71 E-value=1e+02 Score=15.45 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=21.6
Q ss_pred CccCHHHHHHHHHH-hCCCCCHHHHHHHHHhhCc
Q 037913 93 GCITPKSLKRMLSR-LGQSKSDDECKSMIAYFDL 125 (141)
Q Consensus 93 g~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~ 125 (141)
+..+..++...+.. +|...+...+..+++.++.
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G~ 36 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLGF 36 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHcCC
Confidence 45566677766544 5777777777777776543
No 302
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=25.61 E-value=1.1e+02 Score=15.67 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=20.7
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHH
Q 037913 23 ISPSELQQCVEAIGGELSLAEAEAA 47 (141)
Q Consensus 23 i~~~e~~~~l~~~~~~~~~~~~~~l 47 (141)
.+.+++..+.+..|+.++..++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4578888888989999999888764
No 303
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=25.05 E-value=1.9e+02 Score=18.25 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037913 61 FDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYF 123 (141)
Q Consensus 61 ~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 123 (141)
..||++++.. ++=..+...+.-+|+-+++..++..+|++--.+-+...+..|
T Consensus 64 VSEfISFvT~-----------EAsekC~~EkRKTIngdDllwAm~tLGFe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 64 VSEFISFVTG-----------EASEKCQREKRKTINGDDLLWAMSTLGFENYAEPLKIYLQKY 115 (168)
T ss_pred HHHHHHHHhh-----------HHHHHHHHHhcCcccHHHHHHHHHHcCcHhHHHHHHHHHHHH
Confidence 4577777764 122334456667899999999999998764444445554443
No 304
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=24.99 E-value=1.4e+02 Score=25.11 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=33.6
Q ss_pred hccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcC
Q 037913 88 EMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLN 126 (141)
Q Consensus 88 D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 126 (141)
|.--.|+|+...+.+++..+|...+.+++..+|..+..+
T Consensus 1131 DvVMRGfiTsn~Il~vle~iG~~h~a~Dl~~iF~lmNl~ 1169 (1301)
T PF05788_consen 1131 DVVMRGFITSNTILNVLEKIGFGHSASDLATIFTLMNLE 1169 (1301)
T ss_pred hhhhhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHhccc
Confidence 445579999999999999999999999998888877554
No 305
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=24.95 E-value=1.1e+02 Score=15.67 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=7.1
Q ss_pred cCHHHHHHHHHHhCC
Q 037913 95 ITPKSLKRMLSRLGQ 109 (141)
Q Consensus 95 I~~~e~~~~l~~~~~ 109 (141)
++.+++..+|..+|.
T Consensus 19 i~~~ei~~~L~~lg~ 33 (71)
T smart00874 19 LSAEEIEEILKRLGF 33 (71)
T ss_pred CCHHHHHHHHHHCCC
Confidence 444444444444443
No 306
>PRK09389 (R)-citramalate synthase; Provisional
Probab=24.59 E-value=1.6e+02 Score=22.28 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhCc--CCCCcccHHHHHhhh
Q 037913 99 SLKRMLSRLGQSKSDDECKSMIAYFDL--NGDGVLNFDEFRIMM 140 (141)
Q Consensus 99 e~~~~l~~~~~~~~~~~~~~~~~~~d~--~~~g~i~~~ef~~~l 140 (141)
-+...++.+|+.++++++..++..+.. +....|+-+|+..++
T Consensus 322 ~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~ 365 (488)
T PRK09389 322 ALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIA 365 (488)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 345556677888887777777766533 233457777766553
No 307
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=24.46 E-value=1.1e+02 Score=15.35 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhh
Q 037913 99 SLKRMLSRLGQSKSDDECKSMIAYF 123 (141)
Q Consensus 99 e~~~~l~~~~~~~~~~~~~~~~~~~ 123 (141)
|.+..|...|+.++.+.++-++..+
T Consensus 16 Eak~~L~k~GIeLsme~~qP~m~L~ 40 (56)
T PF10815_consen 16 EAKEELDKKGIELSMEMLQPLMQLL 40 (56)
T ss_pred HHHHHHHHcCccCCHHHHHHHHHHH
Confidence 3456677778888888877665443
No 308
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=24.37 E-value=99 Score=14.86 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 037913 3 EKHQQYERVFNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVE 49 (141)
Q Consensus 3 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 49 (141)
.....|...|.. +.+.+..+...+...+| ++...+...|.
T Consensus 10 ~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~ 49 (59)
T cd00086 10 EQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQ 49 (59)
T ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 345556666665 44777777777777666 45666665554
No 309
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=24.24 E-value=2.1e+02 Score=20.57 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=39.4
Q ss_pred HHHHHHHhhh--CCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHH
Q 037913 6 QQYERVFNHF--DSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEA 83 (141)
Q Consensus 6 ~~~~~~f~~~--d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 83 (141)
.+|..+...+ |.|....+--++|......+....-...++-+-+++...=+|.+-|.|...-+.. ....+.++
T Consensus 41 ~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~-----~nP~lae~ 115 (357)
T PLN02508 41 AEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKK-----TNPVVAEI 115 (357)
T ss_pred HHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccc-----CChHHHHH
Confidence 3444444433 3444444555555443333221122223444445555555677777776655543 23456777
Q ss_pred HHHhhcc
Q 037913 84 FKMYEMD 90 (141)
Q Consensus 84 f~~~D~~ 90 (141)
|.....|
T Consensus 116 F~lMaRD 122 (357)
T PLN02508 116 FTLMSRD 122 (357)
T ss_pred HHHhCch
Confidence 7766544
No 310
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=24.22 E-value=1.7e+02 Score=18.75 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=17.6
Q ss_pred ccCCCccCHHHHHHHHHHhCCC
Q 037913 89 MDGCGCITPKSLKRMLSRLGQS 110 (141)
Q Consensus 89 ~~~~g~I~~~e~~~~l~~~~~~ 110 (141)
.||+|.+.+-=+..+|...|..
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCCCC
Confidence 5889998888888888887754
No 311
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=24.20 E-value=1.9e+02 Score=20.43 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=37.6
Q ss_pred HHHHHHHhhh--CCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHH
Q 037913 6 QQYERVFNHF--DSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEA 83 (141)
Q Consensus 6 ~~~~~~f~~~--d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 83 (141)
.+|..+...+ |.|....+--++|......+........++-+-+++...=+|.+-|.|...-+.. ....+.++
T Consensus 25 ~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~-----~nP~lae~ 99 (323)
T cd01047 25 EEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKN-----TNPVVAEL 99 (323)
T ss_pred HHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHccc-----CCcHHHHH
Confidence 3444444433 3444444555555543333222222333344444554445666666665555543 23456666
Q ss_pred HHHhhcc
Q 037913 84 FKMYEMD 90 (141)
Q Consensus 84 f~~~D~~ 90 (141)
|.....|
T Consensus 100 F~lMaRD 106 (323)
T cd01047 100 FRLMARD 106 (323)
T ss_pred HHHHhhh
Confidence 7666443
No 312
>PRK09462 fur ferric uptake regulator; Provisional
Probab=24.07 E-value=1.8e+02 Score=17.68 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=13.9
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 037913 21 RRISPSELQQCVEAIGGELSLAEAEAAVE 49 (141)
Q Consensus 21 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 49 (141)
+.+|.+++...++.-+..++...+-+.+.
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~ 60 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLN 60 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 45555555555555444444444433333
No 313
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=24.03 E-value=88 Score=18.56 Aligned_cols=19 Identities=37% Similarity=0.711 Sum_probs=15.4
Q ss_pred ccCCCccCHHHHHHHHHHh
Q 037913 89 MDGCGCITPKSLKRMLSRL 107 (141)
Q Consensus 89 ~~~~g~I~~~e~~~~l~~~ 107 (141)
.|-+|.|+.+++.+++..+
T Consensus 5 iDtSGSis~~~l~~fl~ev 23 (126)
T PF09967_consen 5 IDTSGSISDEELRRFLSEV 23 (126)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4678999999999888653
No 314
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=23.77 E-value=1.3e+02 Score=15.91 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=28.5
Q ss_pred HHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037913 80 LKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYF 123 (141)
Q Consensus 80 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 123 (141)
+..+|-.+=....+.|....+..++..+|+ ++..++..+..+
T Consensus 6 i~tl~Gdy~~~~g~~i~~~~Li~ll~~~Gv--~e~avR~alsRl 47 (70)
T PF07848_consen 6 IVTLLGDYLRPRGGWIWVASLIRLLAAFGV--SESAVRTALSRL 47 (70)
T ss_dssp HHHHHHHHCCTTTS-EEHHHHHHHHCCTT----HHHHHHHHHHH
T ss_pred hHHHHHHHhccCCCceeHHHHHHHHHHcCC--ChHHHHHHHHHH
Confidence 344555555677789999999999998874 677777666554
No 315
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=23.63 E-value=1.7e+02 Score=17.31 Aligned_cols=29 Identities=10% Similarity=0.357 Sum_probs=13.9
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 037913 92 CGCITPKSLKRMLSRLGQSKSDDECKSMI 120 (141)
Q Consensus 92 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 120 (141)
.|.++.+++..-+..-+..++.+.+..++
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl 54 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVL 54 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45555555544444334444554444443
No 316
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=23.45 E-value=3.2e+02 Score=20.33 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=55.0
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHH---HHHHHhcCCcchHHHHHHHHHHHhhccCCC--
Q 037913 19 GDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDD---FVRLVEGSGEEEKMNDLKEAFKMYEMDGCG-- 93 (141)
Q Consensus 19 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~e---f~~~~~~~~~~~~~~~~~~~f~~~D~~~~g-- 93 (141)
..-.++++.|.++|.......+.-+...+-.-+|...++.|+-=| |..++.. + ..+.+-|..+-..+-|
T Consensus 187 ~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqP-----w-~tllkNWq~LavtHPGYm 260 (563)
T KOG1785|consen 187 KKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQP-----W-KTLLKNWQTLAVTHPGYM 260 (563)
T ss_pred CcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhcc-----H-HHHHHhhhhhhccCCcee
Confidence 345688899999888875555555566666777888888887444 4444442 2 2344456666666666
Q ss_pred -ccCHHHHHHHHHHh
Q 037913 94 -CITPKSLKRMLSRL 107 (141)
Q Consensus 94 -~I~~~e~~~~l~~~ 107 (141)
++|.+|++.-|.++
T Consensus 261 AFLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 261 AFLTYDEVKARLQKY 275 (563)
T ss_pred EEeeHHHHHHHHHHH
Confidence 57889988877654
No 317
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=23.43 E-value=1.8e+02 Score=17.46 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhccCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHh
Q 037913 76 KMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL-GQSKSDDECKSMIAY 122 (141)
Q Consensus 76 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~ 122 (141)
-.+++..++++|-. +.|+.+.+..++... |..++..++..+...
T Consensus 35 f~~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~ 79 (122)
T PF06648_consen 35 FLDKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNR 79 (122)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHH
Confidence 34466666666643 347777777776665 456666665554443
No 318
>PRK10945 gene expression modulator; Provisional
Probab=23.01 E-value=1.4e+02 Score=16.02 Aligned_cols=15 Identities=13% Similarity=0.022 Sum_probs=8.7
Q ss_pred CccCHHHHHHHHHHh
Q 037913 93 GCITPKSLKRMLSRL 107 (141)
Q Consensus 93 g~I~~~e~~~~l~~~ 107 (141)
..++.+|+..+..+.
T Consensus 33 ~~L~~~E~~~f~~Aa 47 (72)
T PRK10945 33 YELSDDELAVFYSAA 47 (72)
T ss_pred ccCCHHHHHHHHHHH
Confidence 455556666666543
No 319
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=22.90 E-value=83 Score=17.97 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=5.5
Q ss_pred cCHHHHHHHHHHh
Q 037913 95 ITPKSLKRMLSRL 107 (141)
Q Consensus 95 I~~~e~~~~l~~~ 107 (141)
+|.+|+..+++..
T Consensus 36 ~s~~eL~~~l~~~ 48 (105)
T cd03035 36 LDAATLERWLAKV 48 (105)
T ss_pred CCHHHHHHHHHHh
Confidence 4444444444433
No 320
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=22.89 E-value=1.4e+02 Score=19.58 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=19.3
Q ss_pred HHhhccCCCccCHHHHHHHHHHh
Q 037913 85 KMYEMDGCGCITPKSLKRMLSRL 107 (141)
Q Consensus 85 ~~~D~~~~g~I~~~e~~~~l~~~ 107 (141)
.-+|.+++|.++.+|+..+....
T Consensus 57 ~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 57 EGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HhhhhcccCCCCHHHHHHHHHHH
Confidence 36789999999999999887654
No 321
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=22.51 E-value=1.3e+02 Score=15.60 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=7.1
Q ss_pred CCCCCHHHHHHHHHhh
Q 037913 108 GQSKSDDECKSMIAYF 123 (141)
Q Consensus 108 ~~~~~~~~~~~~~~~~ 123 (141)
|..++.+++..++..+
T Consensus 16 G~~i~~~~i~~~L~~l 31 (70)
T PF03484_consen 16 GIDISPEEIIKILKRL 31 (70)
T ss_dssp TS---HHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 5555555555555554
No 322
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=22.50 E-value=2.2e+02 Score=18.16 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=5.4
Q ss_pred HHHHHHhhCcC
Q 037913 116 CKSMIAYFDLN 126 (141)
Q Consensus 116 ~~~~~~~~d~~ 126 (141)
+..++.++|.+
T Consensus 45 iknlm~~yd~d 55 (186)
T PF12995_consen 45 IKNLMSQYDKD 55 (186)
T ss_pred HHHHHHhcCCC
Confidence 44555555443
No 323
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=22.46 E-value=1.8e+02 Score=17.14 Aligned_cols=50 Identities=10% Similarity=0.173 Sum_probs=36.9
Q ss_pred HhhhCCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q 037913 12 FNHFDSNGDRRISPSELQQCVEAIGGELSLAEAEAAVEFLDADGDGLLGFDDFVR 66 (141)
Q Consensus 12 f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 66 (141)
|...--.++..+|.+++..+|...|.......+..+...+.. .+..+.+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 333334566779999999999999999888888888888732 45666553
No 324
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=22.35 E-value=2.9e+02 Score=22.22 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=37.1
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCCccCHHHHHHHHHHh
Q 037913 45 EAAVEFLDADGDGLLGFDDFVRLVEGSGEEEKMNDLKEAFKMYEMDGCGCITPKSLKRMLSRL 107 (141)
Q Consensus 45 ~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 107 (141)
..++......+...+..+.+..++. .+..+.++..++...++.|+.+.|+.....+
T Consensus 407 ~~iF~nv~~p~~~~i~ld~~~~f~~-------~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~ 462 (714)
T KOG4629|consen 407 RKIFKNVAKPGVILIDLDDLLRFMG-------DEEAERAFSLFEGASDENITRSSFKEWIVNI 462 (714)
T ss_pred HHHHhccCCCCccchhhhhhhhcCC-------HHHHHHHHHhhhhhcccCccHHHHHHHHHHH
Confidence 4455555555545566666666665 3677788888877555559999998876543
No 325
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=21.73 E-value=2.6e+02 Score=22.48 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHhh
Q 037913 78 NDLKEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYFDLNGDGVLNFDEFRIM 139 (141)
Q Consensus 78 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 139 (141)
...+.+|+..-..+.-.+..+++...+ .+++++..+..++...++.|++..|.+.
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f~-------~~E~a~~~~slfe~~~~~~Itrs~~~~~ 458 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRFM-------GDEEAERAFSLFEGASDENITRSSFKEW 458 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhcC-------CHHHHHHHHHhhhhhcccCccHHHHHHH
Confidence 345666777766666666666655443 5777888888888766666999988765
No 326
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=21.67 E-value=78 Score=22.22 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=34.0
Q ss_pred HHHHHHHhhhCCCCCCccCHHHHHHH-HHHhCCCCCHHHHHHHHHHhC
Q 037913 6 QQYERVFNHFDSNGDRRISPSELQQC-VEAIGGELSLAEAEAAVEFLD 52 (141)
Q Consensus 6 ~~~~~~f~~~d~~~~g~i~~~e~~~~-l~~~~~~~~~~~~~~l~~~~d 52 (141)
..+..-...+|++++-.+.-.-+..+ +..+++..++..+...|..|.
T Consensus 79 ~~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG 126 (335)
T KOG0113|consen 79 HKLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYG 126 (335)
T ss_pred HHHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcC
Confidence 33566677788888877777777764 445677888888888888773
No 327
>COG1438 ArgR Arginine repressor [Transcription]
Probab=21.53 E-value=1.7e+02 Score=18.23 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=25.4
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 92 CGCITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 92 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
...=|.+|+...|...|+..+..-+...++.+.
T Consensus 18 ~~i~TQ~Elv~~L~~~Gi~vTQaTvSRDlkelg 50 (150)
T COG1438 18 EKISTQEELVELLQEEGIEVTQATVSRDLKELG 50 (150)
T ss_pred CCCCCHHHHHHHHHHcCCeEehHHHHHHHHHcC
Confidence 345678888888888888888888877777653
No 328
>PRK04280 arginine repressor; Provisional
Probab=21.05 E-value=2.1e+02 Score=17.66 Aligned_cols=32 Identities=16% Similarity=0.060 Sum_probs=26.0
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 037913 93 GCITPKSLKRMLSRLGQSKSDDECKSMIAYFD 124 (141)
Q Consensus 93 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 124 (141)
..=|.+|+...|+..|+..+.+-+..-++.+.
T Consensus 17 ~I~tQeeL~~~L~~~Gi~vTQATiSRDikeL~ 48 (148)
T PRK04280 17 EIETQDELVDRLREEGFNVTQATVSRDIKELH 48 (148)
T ss_pred CCCCHHHHHHHHHHcCCCeehHHHHHHHHHcC
Confidence 34578899999999999999998877777653
No 329
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=20.92 E-value=2.3e+02 Score=19.56 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=14.1
Q ss_pred CCCCCcccHHHHHHHHhc
Q 037913 53 ADGDGLLGFDDFVRLVEG 70 (141)
Q Consensus 53 ~~~~~~i~~~ef~~~~~~ 70 (141)
...+|.|+..||...+..
T Consensus 29 ~~~~~~IT~~e~~~~~k~ 46 (287)
T PRK03095 29 TSKAGDITKDEFYEQMKT 46 (287)
T ss_pred EecCCcccHHHHHHHHHH
Confidence 345679999999988865
No 330
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=20.82 E-value=1.6e+02 Score=15.95 Aligned_cols=35 Identities=6% Similarity=-0.008 Sum_probs=18.3
Q ss_pred HhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 037913 86 MYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMI 120 (141)
Q Consensus 86 ~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 120 (141)
.+..+++|+|..+-+..+=+--....+.+.+...+
T Consensus 26 ~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al 60 (77)
T cd08033 26 HVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAAL 60 (77)
T ss_pred HhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHH
Confidence 34456677777766655544444444444443333
No 331
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=20.66 E-value=24 Score=15.28 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=8.6
Q ss_pred HHHHhhCcCCCCcccHH
Q 037913 118 SMIAYFDLNGDGVLNFD 134 (141)
Q Consensus 118 ~~~~~~d~~~~g~i~~~ 134 (141)
.++..=|.+++-+|+.+
T Consensus 3 ~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIE 19 (30)
T ss_pred hHhhccccCCCcEEEEe
Confidence 34444555555555543
No 332
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=20.02 E-value=68 Score=17.91 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=12.2
Q ss_pred CCCCCCccCHHHHHHH
Q 037913 16 DSNGDRRISPSELQQC 31 (141)
Q Consensus 16 d~~~~g~i~~~e~~~~ 31 (141)
|.++.|.||...++++
T Consensus 69 ddD~gGWITPsNIkqi 84 (87)
T PF15017_consen 69 DDDGGGWITPSNIKQI 84 (87)
T ss_pred cCCCCccccchhhhhh
Confidence 3467889999888764
No 333
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=20.01 E-value=2.7e+02 Score=18.33 Aligned_cols=111 Identities=20% Similarity=0.170 Sum_probs=57.1
Q ss_pred HHHHHHhhhCCCCCCccCHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHhc-CCcc-hHH-HHH
Q 037913 7 QYERVFNHFDSNGDRRISPSELQQCVEAIG---GELSLAEAEAAVEFLDADGDGLLGFDDFVRLVEG-SGEE-EKM-NDL 80 (141)
Q Consensus 7 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~-~~~~-~~~-~~~ 80 (141)
++.+++......+.|.|+..++...++... -.++++++.+....+..-+.| +....|-.-..- ...+ ... ...
T Consensus 98 qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~~~e~~~~~ 176 (223)
T PF04157_consen 98 QIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVPYSELSKDQ 176 (223)
T ss_dssp HHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST-CHH-HHH
T ss_pred HHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCCchhhhHHH
Confidence 344555555555667888888887777642 135677777777777655544 222222100000 1122 222 334
Q ss_pred HHHHHHhhccCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 037913 81 KEAFKMYEMDGCGCITPKSLKRMLSRLGQSKSDDECKSMIAYF 123 (141)
Q Consensus 81 ~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 123 (141)
..+.........|.+|..++..-+. .+..-+...+..+
T Consensus 177 ~~il~~~~~~~~g~vt~~~l~~~~~-----ws~~~a~~~L~~~ 214 (223)
T PF04157_consen 177 SRILELAEEENGGGVTASELAEKLG-----WSVERAKEALEEL 214 (223)
T ss_dssp HHHHHHH--TTTSEEEHHHHHHHHT-----B-HHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHhC-----CCHHHHHHHHHHH
Confidence 4455555356668999998887663 3444444444443
Done!