Query 037914
Match_columns 84
No_of_seqs 134 out of 747
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 05:40:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03034 phosphoglycerate kina 99.6 1E-16 2.2E-21 132.0 2.7 50 32-84 432-481 (481)
2 COG0126 Pgk 3-phosphoglycerate 99.6 1.1E-16 2.4E-21 129.7 2.2 46 32-80 349-394 (395)
3 PTZ00005 phosphoglycerate kina 99.6 3.3E-16 7.1E-21 126.6 2.1 45 32-79 373-417 (417)
4 PRK00073 pgk phosphoglycerate 99.6 5.3E-16 1.1E-20 124.4 2.3 44 32-78 346-389 (389)
5 PLN02282 phosphoglycerate kina 99.6 5.9E-16 1.3E-20 124.6 2.3 45 32-79 357-401 (401)
6 cd00318 Phosphoglycerate_kinas 99.6 6.8E-16 1.5E-20 124.0 2.3 44 32-78 354-397 (397)
7 PRK13962 bifunctional phosphog 99.5 2E-15 4.4E-20 127.0 2.0 45 32-79 350-394 (645)
8 KOG1367 3-phosphoglycerate kin 99.5 1E-14 2.2E-19 118.7 3.4 45 32-79 371-415 (416)
9 PF00162 PGK: Phosphoglycerate 99.0 4E-11 8.6E-16 96.0 0.8 34 32-68 351-384 (384)
10 PF00044 Gp_dh_N: Glyceraldehy 57.1 1.7 3.6E-05 30.9 -1.7 38 5-42 4-46 (151)
11 COG0057 GapA Glyceraldehyde-3- 39.3 6.7 0.00014 32.1 -1.0 39 4-43 4-48 (335)
12 PTZ00353 glycosomal glyceralde 37.5 8.3 0.00018 31.1 -0.7 13 3-15 4-16 (342)
13 TIGR01534 GAPDH-I glyceraldehy 36.9 8.6 0.00019 30.6 -0.7 10 5-14 3-12 (327)
14 PRK07729 glyceraldehyde-3-phos 36.5 8.9 0.00019 31.0 -0.7 12 3-14 4-15 (343)
15 PRK07403 glyceraldehyde-3-phos 36.4 8.5 0.00018 31.0 -0.8 15 1-15 1-15 (337)
16 PTZ00023 glyceraldehyde-3-phos 36.1 9 0.00019 30.8 -0.7 12 3-14 4-15 (337)
17 PRK15425 gapA glyceraldehyde-3 35.5 8.6 0.00019 30.8 -0.9 12 3-14 4-15 (331)
18 PTZ00434 cytosolic glyceraldeh 35.2 9.7 0.00021 31.2 -0.7 13 3-15 5-17 (361)
19 TIGR00045 glycerate kinase. Th 33.1 18 0.00038 29.6 0.5 34 46-79 238-274 (375)
20 PLN02237 glyceraldehyde-3-phos 32.6 11 0.00024 31.7 -0.7 11 4-14 78-88 (442)
21 PF03077 VacA2: Putative vacuo 32.2 19 0.00041 23.1 0.4 18 50-70 26-43 (60)
22 PF08544 GHMP_kinases_C: GHMP 29.6 22 0.00048 20.9 0.4 17 50-66 50-66 (85)
23 PRK10342 glycerate kinase I; P 27.4 18 0.00038 29.8 -0.4 34 46-79 239-275 (381)
24 PF06740 DUF1213: Protein of u 26.1 30 0.00065 19.4 0.5 7 16-22 1-7 (29)
25 PRK09932 glycerate kinase II; 24.5 32 0.00069 28.3 0.6 34 46-79 239-275 (381)
26 PF04795 PAPA-1: PAPA-1-like c 24.0 69 0.0015 21.0 2.0 24 45-71 66-89 (89)
27 COG0703 AroK Shikimate kinase 21.8 41 0.00088 24.9 0.7 12 48-62 73-84 (172)
28 PRK08289 glyceraldehyde-3-phos 21.6 23 0.0005 30.3 -0.7 11 5-15 131-141 (477)
No 1
>PLN03034 phosphoglycerate kinase; Provisional
Probab=99.63 E-value=1e-16 Score=131.98 Aligned_cols=50 Identities=72% Similarity=0.920 Sum_probs=48.3
Q ss_pred cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccccCCCCC
Q 037914 32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84 (84)
Q Consensus 32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s~~v~~ 84 (84)
+|||++|++++|+.++|||||| ||||+|||||||+||||+||+++.||+|
T Consensus 432 GGDt~aAi~~~g~~~~~shiST---GGGA~Le~LeGk~LPgv~aL~~~~~~~~ 481 (481)
T PLN03034 432 GGDSVAAVEKVGVADVMSHIST---GGGASLELLEGKELPGVVALDEATPVAV 481 (481)
T ss_pred CcHHHHHHHHcCCccceeEEeC---cHHHHHHHHcCCCCcHHHHHhhcCCccC
Confidence 7899999999999999999999 9999999999999999999999988876
No 2
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.1e-16 Score=129.67 Aligned_cols=46 Identities=46% Similarity=0.716 Sum_probs=44.1
Q ss_pred cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccccC
Q 037914 32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEAT 80 (84)
Q Consensus 32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s~ 80 (84)
+|||++|++++|++|+|||||| ||||||||||||+||||++|+++.
T Consensus 349 GGdt~aAi~~~G~~d~~shIST---GGGAsLe~leGk~LPgv~aL~~~~ 394 (395)
T COG0126 349 GGDTAAAIDKLGLADKISHIST---GGGASLEFLEGKELPGVEALEESA 394 (395)
T ss_pred CcHHHHHHHHcCccccCceEec---CchHHHHHhcCCCcchHHHHhhcc
Confidence 7999999999999999999999 999999999999999999998763
No 3
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=99.59 E-value=3.3e-16 Score=126.59 Aligned_cols=45 Identities=51% Similarity=0.696 Sum_probs=43.0
Q ss_pred cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914 32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79 (84)
Q Consensus 32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s 79 (84)
+|||++|++++|++++|||||| ||||+|+|||||+||||+||+++
T Consensus 373 GGdt~aAi~~~g~~~~~shvST---GGGA~Le~LeGk~LPgv~aL~~~ 417 (417)
T PTZ00005 373 GGDTASLVEKTGAANKVSHVST---GGGASLELLEGKELPGVVALSNK 417 (417)
T ss_pred CcHHHHHHHHcCCCCCCceEcC---chHHHHHHHcCCCcchHHHhhcC
Confidence 6899999999999999999999 99999999999999999999753
No 4
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=99.58 E-value=5.3e-16 Score=124.38 Aligned_cols=44 Identities=52% Similarity=0.753 Sum_probs=42.5
Q ss_pred cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccc
Q 037914 32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78 (84)
Q Consensus 32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~ 78 (84)
+|||++|++++|++++|+|||| ||||+|||||||+||||+||++
T Consensus 346 GGdt~aa~~~~g~~~~~shiST---GGGA~Le~LeGk~LPgv~aL~~ 389 (389)
T PRK00073 346 GGDTAAAVEKLGLADKFSHIST---GGGASLEFLEGKELPGVAALEE 389 (389)
T ss_pred CCHHHHHHHHcCCCCCccEEcC---CcHHHHHHHcCCCcchHHHhcC
Confidence 6899999999999999999999 9999999999999999999974
No 5
>PLN02282 phosphoglycerate kinase
Probab=99.58 E-value=5.9e-16 Score=124.58 Aligned_cols=45 Identities=58% Similarity=0.781 Sum_probs=43.2
Q ss_pred cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914 32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79 (84)
Q Consensus 32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s 79 (84)
+|||++|++++|++++|+|||| ||||+|+|||||+||||+||+++
T Consensus 357 GGdt~aA~~~~g~~~~~shvST---GGGA~Le~LeGk~LPgi~aL~~~ 401 (401)
T PLN02282 357 GGDSVAAVEKVGLADKMSHIST---GGGASLELLEGKPLPGVLALDDA 401 (401)
T ss_pred CcHHHHHHHHcCCcCCceEEeC---chHHHHHHHcCCCcchHHHhhcC
Confidence 6899999999999999999999 99999999999999999999863
No 6
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=99.57 E-value=6.8e-16 Score=124.00 Aligned_cols=44 Identities=50% Similarity=0.730 Sum_probs=42.5
Q ss_pred cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccc
Q 037914 32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78 (84)
Q Consensus 32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~ 78 (84)
+|||++|++++|++++|||||| ||||+|+|||||+||||+||++
T Consensus 354 GGdt~aa~~~~g~~~~~shvST---GGGA~Le~LeGk~LPgi~aL~~ 397 (397)
T cd00318 354 GGDTAAAAEKFGLADKISHVST---GGGASLELLEGKELPGVAALEE 397 (397)
T ss_pred CcHHHHHHHHcCCCCCceEEcC---chHHHHHHHcCCCCchHHhhcC
Confidence 7999999999999999999999 9999999999999999999974
No 7
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=99.53 E-value=2e-15 Score=127.00 Aligned_cols=45 Identities=44% Similarity=0.622 Sum_probs=43.4
Q ss_pred cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914 32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79 (84)
Q Consensus 32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s 79 (84)
+|||++|++++|++++|||||| ||||+|||||||+||||+||+++
T Consensus 350 GGdt~aa~~~~g~~~~~shvST---GGGA~Le~LeGk~LPgv~aL~~s 394 (645)
T PRK13962 350 GGDSAAAVEKLGFADKMSHIST---GGGASLEFLEGKVLPGIACLLDK 394 (645)
T ss_pred chHHHHHHHHcCCccCceEEcC---ChHHHHHHHcCCccHHHHHHhhc
Confidence 6899999999999999999999 99999999999999999999875
No 8
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1e-14 Score=118.72 Aligned_cols=45 Identities=44% Similarity=0.589 Sum_probs=43.5
Q ss_pred cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914 32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79 (84)
Q Consensus 32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s 79 (84)
+|||+.|++++|.+|++||||| ||||+||+||||.||||.+|++.
T Consensus 371 GGDTata~~k~g~~dk~ShVST---GGGasLeLLeGK~LPGv~aLs~~ 415 (416)
T KOG1367|consen 371 GGDTATACKKFGTEDKVSHVST---GGGASLELLEGKVLPGVDALSEA 415 (416)
T ss_pred CCcHHHHHHHhCcccceeeeec---CCceehhhhcCCcCcchhhhccC
Confidence 6899999999999999999999 99999999999999999999875
No 9
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=99.05 E-value=4e-11 Score=95.99 Aligned_cols=34 Identities=41% Similarity=0.612 Sum_probs=33.0
Q ss_pred cccHHHHHHhhCCCCccEEeecCCCCccceecccCCC
Q 037914 32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGK 68 (84)
Q Consensus 32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk 68 (84)
+|||++|++++|+.++|||||| ||||+|+|||||
T Consensus 351 GGdt~~a~~~~g~~~~~shvST---GGGA~L~~LeGk 384 (384)
T PF00162_consen 351 GGDTAAAIKKFGLADKFSHVST---GGGAFLEFLEGK 384 (384)
T ss_dssp SHHHHHHHHHTTGGGGSSEEES---SSHHHHHHHTTS
T ss_pred ccHHHHHHHhcCcccceeEEec---CcHHHHHHhcCC
Confidence 6899999999999999999999 999999999997
No 10
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=57.05 E-value=1.7 Score=30.92 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=21.7
Q ss_pred ccCccccCCCcc---ccCCCccc--cCCCCCCcccHHHHHHhh
Q 037914 5 NINGFGRTGNRK---EASRPQWQ--GRNNNHWRWRLCCHVENV 42 (84)
Q Consensus 5 ~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~DTaaAi~~~ 42 (84)
-||||||-|.+- -..+|.-+ +-|.-.=..++.+++-++
T Consensus 4 gINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~Llky 46 (151)
T PF00044_consen 4 GINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKY 46 (151)
T ss_dssp EEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHE
T ss_pred EEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhc
Confidence 489999999742 22333332 233333356677777664
No 11
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=39.26 E-value=6.7 Score=32.12 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=21.2
Q ss_pred cccCccccCCCcccc---CCC---ccccCCCCCCcccHHHHHHhhC
Q 037914 4 KNINGFGRTGNRKEA---SRP---QWQGRNNNHWRWRLCCHVENVG 43 (84)
Q Consensus 4 ~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~DTaaAi~~~G 43 (84)
--||||||-|.+--. .++ +--+-|.. =.-|+.+++-++.
T Consensus 4 V~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyD 48 (335)
T COG0057 4 VAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYD 48 (335)
T ss_pred EEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhc
Confidence 469999999976321 111 11122221 4556677766654
No 12
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=37.50 E-value=8.3 Score=31.12 Aligned_cols=13 Identities=46% Similarity=0.836 Sum_probs=10.3
Q ss_pred ccccCccccCCCc
Q 037914 3 QKNINGFGRTGNR 15 (84)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (84)
.-.||||||.|.-
T Consensus 4 kv~INGfGRIGR~ 16 (342)
T PTZ00353 4 TVGINGFGPVGKA 16 (342)
T ss_pred EEEEECCChHHHH
Confidence 3569999999953
No 13
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=36.86 E-value=8.6 Score=30.59 Aligned_cols=10 Identities=70% Similarity=1.311 Sum_probs=8.8
Q ss_pred ccCccccCCC
Q 037914 5 NINGFGRTGN 14 (84)
Q Consensus 5 ~~~~~~~~~~ 14 (84)
.||||||-|.
T Consensus 3 ~INGfGRIGr 12 (327)
T TIGR01534 3 GINGFGRIGR 12 (327)
T ss_pred EEEccChHHH
Confidence 5999999995
No 14
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=36.50 E-value=8.9 Score=30.97 Aligned_cols=12 Identities=58% Similarity=1.068 Sum_probs=10.0
Q ss_pred ccccCccccCCC
Q 037914 3 QKNINGFGRTGN 14 (84)
Q Consensus 3 ~~~~~~~~~~~~ 14 (84)
.-.||||||.|.
T Consensus 4 ki~INGfGRIGR 15 (343)
T PRK07729 4 KVAINGFGRIGR 15 (343)
T ss_pred EEEEECcChHHH
Confidence 357999999995
No 15
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=36.38 E-value=8.5 Score=30.96 Aligned_cols=15 Identities=53% Similarity=0.911 Sum_probs=11.8
Q ss_pred CCccccCccccCCCc
Q 037914 1 MKQKNINGFGRTGNR 15 (84)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (84)
|..-.||||||.|.-
T Consensus 1 ~~ki~INGfGRIGR~ 15 (337)
T PRK07403 1 MIRVAINGFGRIGRN 15 (337)
T ss_pred CeEEEEEccChHHHH
Confidence 555679999999963
No 16
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=36.10 E-value=9 Score=30.77 Aligned_cols=12 Identities=58% Similarity=1.077 Sum_probs=9.9
Q ss_pred ccccCccccCCC
Q 037914 3 QKNINGFGRTGN 14 (84)
Q Consensus 3 ~~~~~~~~~~~~ 14 (84)
.-.||||||.|.
T Consensus 4 ki~INGfGRIGr 15 (337)
T PTZ00023 4 KLGINGFGRIGR 15 (337)
T ss_pred EEEEECcChHHH
Confidence 457999999995
No 17
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=35.53 E-value=8.6 Score=30.80 Aligned_cols=12 Identities=58% Similarity=1.088 Sum_probs=10.0
Q ss_pred ccccCccccCCC
Q 037914 3 QKNINGFGRTGN 14 (84)
Q Consensus 3 ~~~~~~~~~~~~ 14 (84)
.-.||||||.|.
T Consensus 4 ~i~inGfGRIGr 15 (331)
T PRK15425 4 KVGINGFGRIGR 15 (331)
T ss_pred EEEEEeeChHHH
Confidence 457999999995
No 18
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=35.16 E-value=9.7 Score=31.25 Aligned_cols=13 Identities=54% Similarity=0.961 Sum_probs=10.4
Q ss_pred ccccCccccCCCc
Q 037914 3 QKNINGFGRTGNR 15 (84)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (84)
.-.||||||-|..
T Consensus 5 kVgINGFGRIGR~ 17 (361)
T PTZ00434 5 KVGINGFGRIGRM 17 (361)
T ss_pred EEEEECcChHHHH
Confidence 4579999999954
No 19
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=33.13 E-value=18 Score=29.64 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=27.0
Q ss_pred CccEEeecCCCCcc---ceecccCCCCCchhhhcccc
Q 037914 46 SVMNHISTSGAGGG---AGLELPEGKELPVVVAFDEA 79 (84)
Q Consensus 46 d~~sHIST~~~GGG---A~LefLeGk~LPgVeAL~~s 79 (84)
.++..+.=+||+|| |++.||.++-.||++.+.+.
T Consensus 238 ~d~~~~pGaGAAGGlg~al~a~lga~l~~G~d~v~~~ 274 (375)
T TIGR00045 238 KDVRTIPGAGAAGGMGAGLLAFLGARLKPGIDLVLEL 274 (375)
T ss_pred cccccCCCCCccccHHHHHHHHhCCEEccHHHHHHHh
Confidence 45777778888876 56778999999999988653
No 20
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=32.56 E-value=11 Score=31.70 Aligned_cols=11 Identities=64% Similarity=1.120 Sum_probs=9.5
Q ss_pred cccCccccCCC
Q 037914 4 KNINGFGRTGN 14 (84)
Q Consensus 4 ~~~~~~~~~~~ 14 (84)
-.||||||.|.
T Consensus 78 VgINGFGRIGR 88 (442)
T PLN02237 78 VAINGFGRIGR 88 (442)
T ss_pred EEEECCChHHH
Confidence 46999999995
No 21
>PF03077 VacA2: Putative vacuolating cytotoxin; InterPro: IPR004311 Proteins containing this domain include a number of Helicobacter pylori outer membrane proteins with multiple copies of this small conserved region.
Probab=32.22 E-value=19 Score=23.12 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=13.8
Q ss_pred EeecCCCCccceecccCCCCC
Q 037914 50 HISTSGAGGGAGLELPEGKEL 70 (84)
Q Consensus 50 HIST~~~GGGA~LefLeGk~L 70 (84)
-++| ||||.|.|=.-..|
T Consensus 26 ~~~t---GGgA~l~Fna~~~i 43 (60)
T PF03077_consen 26 AWGT---GGGATLNFNATNNI 43 (60)
T ss_pred cccc---CCCeEEEEeccceE
Confidence 3577 99999999766554
No 22
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=29.57 E-value=22 Score=20.92 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=10.1
Q ss_pred EeecCCCCccceecccC
Q 037914 50 HISTSGAGGGAGLELPE 66 (84)
Q Consensus 50 HIST~~~GGGA~LefLe 66 (84)
-...||+|||.++-.|.
T Consensus 50 ~~~~sGsG~G~~v~~l~ 66 (85)
T PF08544_consen 50 GAKMSGSGGGPTVFALC 66 (85)
T ss_dssp EEEEETTSSSSEEEEEE
T ss_pred ceecCCCCCCCeEEEEE
Confidence 33445677777766554
No 23
>PRK10342 glycerate kinase I; Provisional
Probab=27.38 E-value=18 Score=29.81 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=27.1
Q ss_pred CccEEeecCCCCcc---ceecccCCCCCchhhhcccc
Q 037914 46 SVMNHISTSGAGGG---AGLELPEGKELPVVVAFDEA 79 (84)
Q Consensus 46 d~~sHIST~~~GGG---A~LefLeGk~LPgVeAL~~s 79 (84)
.++.++.=+||+|| |++.||.++-.||++.+.+.
T Consensus 239 ~~~~~~pGaGAAGGlg~al~a~lga~l~~G~d~v~~~ 275 (381)
T PRK10342 239 VDVKDVPGAGAAGGMGAALMAFLGAELKSGIEIVTTA 275 (381)
T ss_pred ccccCCCCCCccchHHHHHHHHhCCEECCHHHHHHHh
Confidence 45677888888876 56788999999999987654
No 24
>PF06740 DUF1213: Protein of unknown function (DUF1213); InterPro: IPR009603 This family represents a short conserved repeat within Drosophila melanogaster proteins of unknown function. Approximately 50 copies of this repeat are present in each protein.
Probab=26.11 E-value=30 Score=19.44 Aligned_cols=7 Identities=86% Similarity=1.208 Sum_probs=5.0
Q ss_pred cccCCCc
Q 037914 16 KEASRPQ 22 (84)
Q Consensus 16 ~~~~~~~ 22 (84)
||+|||.
T Consensus 1 KE~SRPe 7 (29)
T PF06740_consen 1 KEASRPE 7 (29)
T ss_pred CCCCCch
Confidence 6777774
No 25
>PRK09932 glycerate kinase II; Provisional
Probab=24.52 E-value=32 Score=28.32 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=26.8
Q ss_pred CccEEeecCCCCcc---ceecccCCCCCchhhhcccc
Q 037914 46 SVMNHISTSGAGGG---AGLELPEGKELPVVVAFDEA 79 (84)
Q Consensus 46 d~~sHIST~~~GGG---A~LefLeGk~LPgVeAL~~s 79 (84)
.++..+.=+||+|| +++.||.++-.||++.+.+.
T Consensus 239 ~~~~~~pGaGAAGGlg~al~a~l~a~l~~G~d~v~~~ 275 (381)
T PRK09932 239 INVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNA 275 (381)
T ss_pred ccccCCCCCCccchHHHHHHHHhCCEEccHHHHHHHh
Confidence 55677778888877 45778999999999987654
No 26
>PF04795 PAPA-1: PAPA-1-like conserved region; InterPro: IPR006880 This is a group of proteins with a conserved C-terminal region which is found in PAPA-1, a PAP-1 binding protein, Q9C086 from SWISSPROT.
Probab=23.99 E-value=69 Score=21.00 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=20.7
Q ss_pred CCccEEeecCCCCccceecccCCCCCc
Q 037914 45 ASVMNHISTSGAGGGAGLELPEGKELP 71 (84)
Q Consensus 45 ~d~~sHIST~~~GGGA~LefLeGk~LP 71 (84)
..-|.+||+ --|.+|.|.++-.||
T Consensus 66 ~~~IR~v~~---~~G~~vs~P~~~~~P 89 (89)
T PF04795_consen 66 PPMIRWVSN---KNGSRVSVPEEMGLP 89 (89)
T ss_pred CCEEEEEEC---CCceEEEecCCCCCC
Confidence 456899999 999999999997776
No 27
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=21.85 E-value=41 Score=24.88 Aligned_cols=12 Identities=58% Similarity=0.722 Sum_probs=10.5
Q ss_pred cEEeecCCCCcccee
Q 037914 48 MNHISTSGAGGGAGL 62 (84)
Q Consensus 48 ~sHIST~~~GGGA~L 62 (84)
-.-||| |||+.+
T Consensus 73 ~~ViaT---GGG~v~ 84 (172)
T COG0703 73 NAVIAT---GGGAVL 84 (172)
T ss_pred CeEEEC---CCcccc
Confidence 478999 999987
No 28
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=21.58 E-value=23 Score=30.28 Aligned_cols=11 Identities=45% Similarity=0.854 Sum_probs=9.3
Q ss_pred ccCccccCCCc
Q 037914 5 NINGFGRTGNR 15 (84)
Q Consensus 5 ~~~~~~~~~~~ 15 (84)
-||||||.|.-
T Consensus 131 ~InGFGRIGR~ 141 (477)
T PRK08289 131 VLYGFGRIGRL 141 (477)
T ss_pred EEECCCHHHHH
Confidence 58999999964
Done!