RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 037914
(84 letters)
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional.
Length = 481
Score = 71.6 bits (175), Expect = 2e-16
Identities = 36/46 (78%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
VE VGVA VM+HIST GGGA LEL EGKELP VVA DEATPVAV
Sbjct: 439 VEKVGVADVMSHIST---GGGASLELLEGKELPGVVALDEATPVAV 481
>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is
a monomeric enzyme which catalyzes the transfer of the
high-energy phosphate group of 1,3-bisphosphoglycerate
to ADP, forming ATP and 3-phosphoglycerate. This
reaction represents the first of the two substrate-level
phosphorylation events in the glycolytic pathway.
Substrate-level phosphorylation is defined as production
of ATP by a process, which is catalyzed by
water-soluble enzymes in the cytosol; not involving
membranes and ion gradients. .
Length = 397
Score = 53.0 bits (128), Expect = 7e-10
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
E G+A ++H+ST GGGA LEL EGKELP V A +E
Sbjct: 361 AEKFGLADKISHVST---GGGASLELLEGKELPGVAALEE 397
>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional.
Length = 389
Score = 51.6 bits (125), Expect = 2e-09
Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
VE +G+A +HIST GGGA LE EGKELP V A +E
Sbjct: 353 VEKLGLADKFSHIST---GGGASLEFLEGKELPGVAALEE 389
>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase.
Length = 401
Score = 51.9 bits (124), Expect = 2e-09
Identities = 26/41 (63%), Positives = 30/41 (73%), Gaps = 3/41 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79
VE VG+A M+HIST GGGA LEL EGK LP V+A D+A
Sbjct: 364 VEKVGLADKMSHIST---GGGASLELLEGKPLPGVLALDDA 401
>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and
metabolism].
Length = 395
Score = 51.4 bits (124), Expect = 3e-09
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 38 HVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79
++ +G+A ++HIST GGGA LE EGKELP V A +E+
Sbjct: 355 AIDKLGLADKISHIST---GGGASLEFLEGKELPGVEALEES 393
>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional.
Length = 417
Score = 43.5 bits (103), Expect = 2e-06
Identities = 23/37 (62%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVA 75
VE G A+ ++H+ST GGGA LEL EGKELP VVA
Sbjct: 380 VEKTGAANKVSHVST---GGGASLELLEGKELPGVVA 413
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 43.6 bits (103), Expect = 2e-06
Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELP 71
VE +G A M+HIST GGGA LE EGK LP
Sbjct: 357 VEKLGFADKMSHIST---GGGASLEFLEGKVLP 386
>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase.
Length = 383
Score = 40.1 bits (95), Expect = 2e-05
Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 37 CHVENVGVASVMNHISTSGAGGGAGLELPEGK 68
VE G+A +HIST GGGA LEL EGK
Sbjct: 355 AAVEKAGLADKFSHIST---GGGASLELLEGK 383
>gnl|CDD|150068 pfam09272, Hepsin-SRCR, Hepsin, SRCR. Members of this family
form an extracellular domain of the serine protease
hepsin. They are formed primarily by three elements of
regular secondary structure: a 12-residue alpha helix,
a twisted five-stranded antiparallel beta sheet, and a
second, two-stranded, antiparallel sheet. The two
beta-sheets lie at roughly right angles to each other,
with the helix nestled between the two, adopting an
SRCR fold. The exact function of this domain has not
been identified, though it probably may serve to orient
the protease domain or place it in the vicinity of its
substrate.
Length = 110
Score = 26.0 bits (57), Expect = 1.6
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 21/69 (30%)
Query: 27 NNNHWRWRLCCH-----------VENVGVASVMNH----ISTSGAGGGAGL------ELP 65
+ WRL C E +G +NH + T+GA G +G ELP
Sbjct: 18 DKTEGTWRLLCSSRSNARVAGLTCEEMGFLRALNHSELDVRTAGANGTSGFFCVDEGELP 77
Query: 66 EGKELPVVV 74
G+ L V+
Sbjct: 78 YGQRLLTVI 86
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 26.1 bits (58), Expect = 2.1
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 6 INGFGRTGNR 15
I GFGRTGN
Sbjct: 261 ICGFGRTGNM 270
>gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid
transport and metabolism].
Length = 334
Score = 25.7 bits (57), Expect = 3.3
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 46 SVMNHISTSGAGGGAGLELPE--GKELPVVVAFDEATPVA 83
V + + SGAG G+EL L + P+A
Sbjct: 155 VVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLA 194
>gnl|CDD|224833 COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope
biogenesis, outer membrane].
Length = 253
Score = 25.7 bits (57), Expect = 3.4
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 12 TGNRKEASRPQWQGRNNNHWRWRLC 36
+G K A P+W + W +RL
Sbjct: 201 SGRVKRA--PRWMQKLGLEWLYRLL 223
>gnl|CDD|224895 COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid
transport and metabolism].
Length = 314
Score = 25.3 bits (56), Expect = 4.7
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 44 VASVMNHIST---SGAGGGAGLELPEGKELPVVVAFDEATP 81
V V+ ST +G GG G L G LP+ A ++P
Sbjct: 120 VPPVLGSRSTDLRAGIGGFQGRPLQAGDVLPLGAAKAASSP 160
>gnl|CDD|199835 cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein
(PQQ-dependent type I alcohol dehydrogenase). This
bacterial family of homodimeric ethanol dehydrogenases
utilize pyrroloquinoline quinone (PQQ) as a cofactor. It
represents proteins whose expression may be induced by
ethanol, and which are similar to quinoprotein methanol
dehydrogenases, but have higher specificities for
ethanol and other primary and secondary alcohols.
Dehydrogenases with PQQ cofactors, such as ethanol,
methanol, and membrane-bound glucose dehydrogenases,
form an 8-bladed beta-propeller.
Length = 529
Score = 25.0 bits (55), Expect = 5.2
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 33 WRLCCHVENVGVA 45
R CC V N GVA
Sbjct: 94 IRPCCDVVNRGVA 106
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 24.4 bits (53), Expect = 9.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 55 GAGGGAGLELPEGKELPVVVAFDEA 79
G GGG LE E + L + A DE
Sbjct: 294 GLGGGPRLEGAEPRLLAAMTALDEQ 318
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.428
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,290,434
Number of extensions: 320904
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 16
Length of query: 84
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 32
Effective length of database: 8,631,194
Effective search space: 276198208
Effective search space used: 276198208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)