RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 037914
(84 letters)
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis,
transferase, bisubstrate, analog; HET: BIS EPE; 1.60A
{Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Length = 415
Score = 53.3 bits (129), Expect = 3e-10
Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
E G A M+H+ST GGGA LEL EGK LP V D+
Sbjct: 378 AELSGEAKRMSHVST---GGGASLELLEGKTLPGVTVLDD 414
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural
genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A
{Campylobacter jejuni subsp}
Length = 403
Score = 52.9 bits (128), Expect = 4e-10
Identities = 22/40 (55%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
V G A M IST GGGA LEL EGKELP V A
Sbjct: 363 VARAGDADEMTFIST---GGGASLELIEGKELPGVKALRS 399
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 52.9 bits (128), Expect = 5e-10
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
V G+ +H+ST GGGA LE EGKELP + +
Sbjct: 359 VNKFGLEDKFSHVST---GGGASLEFLEGKELPGIASMRI 395
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Length = 415
Score = 52.9 bits (128), Expect = 5e-10
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
+ GV ++H+ST GGGA LEL EGKELP V E
Sbjct: 377 AKKYGVTDKISHVST---GGGASLELLEGKELPGVAFLSE 413
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Length = 394
Score = 52.5 bits (127), Expect = 6e-10
Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
VE G+A M+HIST GGGA LE EGK+LP VVA ++
Sbjct: 357 VEKFGLADKMDHIST---GGGASLEFMEGKQLPGVVALED 393
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000,
structural genomics/proteomics initiative, RSGI, NPPSFA;
HET: 3PG; 2.10A {Pyrococcus horikoshii}
Length = 410
Score = 52.5 bits (127), Expect = 7e-10
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79
++ G+ + HIST GGGA L G+ELPV+ A +
Sbjct: 365 IQKYGITG-ITHIST---GGGAMLSFFAGEELPVLRALQIS 401
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli}
Length = 387
Score = 52.1 bits (126), Expect = 9e-10
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
++ G+A +++IST GGGA LE EGK LP V +E
Sbjct: 347 IDLFGIADKISYIST---GGGAFLEFVEGKVLPAVAMLEE 383
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics
initiative, RSGI, structural genomics, transferase;
1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Length = 390
Score = 51.3 bits (124), Expect = 1e-09
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFD 77
V +G+ H+ST GGGA LE E LP + +
Sbjct: 354 VNRLGLKERFGHVST---GGGASLEFLEKGTLPGLEVLE 389
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: ADP;
2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Length = 395
Score = 51.3 bits (124), Expect = 1e-09
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
+E G+ +++IST GGA LE EGK+LP + E
Sbjct: 355 IEKFGIKDQVSYIST---AGGAFLEFLEGKKLPAIEILKE 391
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi
malaria parasite; 2.70A {Plasmodium falciparum} PDB:
1ltk_A* 3oza_A
Length = 417
Score = 51.4 bits (124), Expect = 2e-09
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFD 77
VE + ++H+ST GGGA LEL EGKELP V+A
Sbjct: 381 VEQQNKKNEISHVST---GGGASLELLEGKELPGVLALS 416
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia,
transferase, phosphoprotein, KI glycolysis,
nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens}
PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A*
2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A*
2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A*
...
Length = 416
Score = 51.4 bits (124), Expect = 2e-09
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFD 77
++H+ST GGGA LEL EGK LP V A
Sbjct: 379 CAKWNTEDKVSHVST---GGGASLELLEGKVLPGVDALS 414
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly
mutant, permutation, permuted sequence, protein foldin
domain protein; 2.30A {Saccharomyces cerevisiae} SCOP:
c.86.1.1
Length = 416
Score = 49.5 bits (119), Expect = 9e-09
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPV 82
+ GV ++H+ST GGGA LEL EGKELP V E +
Sbjct: 307 AKKYGVTDKISHVST---GGGASLELLEGKELPGVAFLSEKKSL 347
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.19
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 32 RWRLCCHVENVGVASVMNHISTSGAGGGAGL-----ELPEGKELPVVVAFD-EATP 81
+W + A+ HI G GG +GL +G + V+VA + P
Sbjct: 489 KWETTTQFK----AT---HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 24.7 bits (53), Expect = 4.5
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 1 MKQKNINGFGRTGNR 15
M +NG+G G R
Sbjct: 1 MVNVAVNGYGTIGKR 15
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 24.4 bits (54), Expect = 5.1
Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 1/14 (7%)
Query: 1 MKQK-NINGFGRTG 13
+ INGFGR G
Sbjct: 16 FQGTLGINGFGRIG 29
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 24.5 bits (54), Expect = 5.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 7 INGFGRIG 14
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-;
oxidoreductase, structural genomics, structural
genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A
{Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 24.5 bits (54), Expect = 5.9
Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 1/14 (7%)
Query: 1 MKQK-NINGFGRTG 13
+ INGFGR G
Sbjct: 6 RELTVGINGFGRIG 19
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 24.1 bits (53), Expect = 6.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 6 INGFGRTGN 14
I GFGRTGN
Sbjct: 266 ICGFGRTGN 274
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 24.1 bits (53), Expect = 6.4
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 6 INGFGRTGN 14
+ GFGR G
Sbjct: 264 VTGFGRCGE 272
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 24.1 bits (53), Expect = 6.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 6 INGFGRTGN 14
I GFGRTGN
Sbjct: 273 ICGFGRTGN 281
>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB,
montreal-kingston bacterial structural genomics
initiative, BSGI, structural genomics; 1.60A
{Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A*
1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A*
Length = 408
Score = 24.1 bits (53), Expect = 7.0
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 6 INGFGRTGNRKEASRP 21
++GFG+ G + + P
Sbjct: 126 LSGFGQYGTEEYTNLP 141
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 24.1 bits (53), Expect = 7.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 6 INGFGRTGN 14
I GFGRTG
Sbjct: 262 ICGFGRTGE 270
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 24.1 bits (53), Expect = 7.1
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 6 INGFGRTGN 14
+ GFGR G
Sbjct: 264 VTGFGRLGT 272
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A
1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 24.0 bits (53), Expect = 7.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 6 INGFGRIG 13
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 24.1 bits (53), Expect = 7.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 8 INGFGRIG 15
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 24.1 bits (53), Expect = 7.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 16 INGFGRIG 23
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3;
NAD(P)-binding rossmann-fold domain, alpha and beta
protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 24.0 bits (53), Expect = 7.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 6 INGFGRIG 13
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 24.1 bits (53), Expect = 7.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 6 INGFGRTGN 14
I GFGRTG
Sbjct: 258 ICGFGRTGK 266
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q
3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q*
3ksd_Q* 3ksz_O*
Length = 338
Score = 24.0 bits (53), Expect = 7.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 9 INGFGRIG 16
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 24.0 bits (53), Expect = 8.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 7 INGFGRIG 14
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 23.7 bits (52), Expect = 8.3
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
+NGFGR G
Sbjct: 8 VNGFGRIG 15
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 23.7 bits (52), Expect = 8.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 7 INGFGRIG 14
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 24.0 bits (53), Expect = 8.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 5 INGFGRIG 12
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 24.0 bits (53), Expect = 8.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 7 INGFGRIG 14
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 24.0 bits (53), Expect = 8.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 6 INGFGRIG 13
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 23.7 bits (52), Expect = 8.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 26 INGFGRIG 33
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 24.0 bits (53), Expect = 8.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 7 INGFGRIG 14
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 24.0 bits (53), Expect = 8.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 6 INGFGRIG 13
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 23.7 bits (52), Expect = 8.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 6 INGFGRTGN 14
I GFGRTG+
Sbjct: 262 ITGFGRTGS 270
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH,
glycolysis, oxidoreductase, NAD, rossmann fold; HET:
NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3
d.81.1.1 PDB: 1cer_O* 1vc2_A*
Length = 331
Score = 23.6 bits (52), Expect = 8.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 5 INGFGRIG 12
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta
fold, oxidoreductase-protein binding complex; HET: NAD;
2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 23.6 bits (52), Expect = 8.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 7 INGFGRIG 14
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1
PDB: 3gnq_A*
Length = 335
Score = 23.6 bits (52), Expect = 8.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
ING+GR G
Sbjct: 6 INGYGRIG 13
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid,
structural genomics, national institute of allergy AN
infectious diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 23.6 bits (52), Expect = 8.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 9 INGFGRIG 16
>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina
thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A
1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A
Length = 247
Score = 23.7 bits (51), Expect = 9.4
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 36 CCHVEN---VGV-ASVMN-----HISTSGAGGGAGLELPEGKELP 71
V + +G+ A V + G+ +P+G+ +P
Sbjct: 158 PAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGVTIPDGRYIP 202
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer,
maturation of [NIFE]-hydroge nitrIle synthesis, iron;
2.56A {Thermoanaerobacter tengcongensis}
Length = 314
Score = 23.7 bits (52), Expect = 9.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 43 GVASVMNHISTSGAGGGAGLELPEGKELPV 72
GVA V+ IS G G+++ E K LPV
Sbjct: 204 GVAEVLYEISKM---SGVGIKIYEEK-LPV 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.428
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,358,012
Number of extensions: 64626
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 52
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)