RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 037914
(84 letters)
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei
[TaxId: 5691]}
Length = 415
Score = 49.0 bits (116), Expect = 4e-09
Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
E G A M+H+ST GGGA LEL EGK LP V D+
Sbjct: 378 AELSGEAKRMSHVST---GGGASLELLEGKTLPGVTVLDD 414
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 394
Score = 48.9 bits (116), Expect = 5e-09
Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
VE G+A M+HIST GGGA LE EGK+LP VVA ++
Sbjct: 357 VEKFGLADKMDHIST---GGGASLEFMEGKQLPGVVALED 393
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 415
Score = 48.2 bits (114), Expect = 7e-09
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 37 CHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
+ GV ++H+ST GGGA LEL EGKELP V E
Sbjct: 375 TVAKKYGVTDKISHVST---GGGASLELLEGKELPGVAFLSE 413
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus
[TaxId: 274]}
Length = 390
Score = 48.2 bits (114), Expect = 8e-09
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFD 77
V +G+ H+ST GGGA LE E LP + +
Sbjct: 354 VNRLGLKERFGHVST---GGGASLEFLEKGTLPGLEVLE 389
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima
[TaxId: 2336]}
Length = 398
Score = 47.0 bits (111), Expect = 2e-08
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVA 75
V G+ +H+ST GGGA LE EGKELP + +
Sbjct: 359 VNKFGLEDKFSHVST---GGGASLEFLEGKELPGIAS 392
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 417
Score = 46.6 bits (110), Expect = 3e-08
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVA 75
VE + ++H+ST GGGA LEL EGKELP V+A
Sbjct: 381 VEQQNKKNEISHVST---GGGASLELLEGKELPGVLA 414
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 413
Score = 46.3 bits (109), Expect = 4e-08
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 39 VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
++H+ST GGGA LEL EGK LP V A
Sbjct: 376 CAKWNTEDNVSHVST---GGGASLELLEGKVLPGVDALSN 412
>d1hfua2 b.6.1.3 (A:132-303) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 172
Score = 27.0 bits (59), Expect = 0.20
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 6 INGFGRTGNRKEASRPQWQGRNNNHWRWRLCCHVENVG-VASVMNH 50
ING GR A +R RL + S+ H
Sbjct: 39 INGKGRYVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGH 84
>d2q9oa2 b.6.1.3 (A:163-343) Laccase {Melanocarpus albomyces
[TaxId: 204285]}
Length = 181
Score = 26.2 bits (57), Expect = 0.37
Identities = 7/33 (21%), Positives = 8/33 (24%)
Query: 6 INGFGRTGNRKEASRPQWQGRNNNHWRWRLCCH 38
ING N E R R+
Sbjct: 38 INGTAVNPNTGEGQYANVTLTPGKRHRLRILNT 70
>d1gyca2 b.6.1.3 (A:131-300) Laccase {Trametes versicolor, laccase
2 [TaxId: 5325]}
Length = 170
Score = 25.1 bits (54), Expect = 0.96
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 6 INGFGRTGNRKEASRPQWQGRNNNHWRWRLCCHVENVG-VASVMNHIST 53
ING GR+ + A+ ++ +R+RL + S+ H T
Sbjct: 41 INGLGRSASTPTAALAVINVQHGKRYRFRLVSISCDPNYTFSIDGHNLT 89
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 24.9 bits (54), Expect = 1.3
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 1 MKQKNINGFGRTGNR 15
MK ING+G G R
Sbjct: 1 MKAVAINGYGTVGKR 15
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 24.3 bits (52), Expect = 2.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 5 INGFGRIG 12
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 24.1 bits (52), Expect = 2.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 5 INGFGRIG 12
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 23.9 bits (51), Expect = 3.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 5 INGFGRIG 12
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 23.9 bits (51), Expect = 3.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 7 INGFGRIG 14
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 23.7 bits (51), Expect = 3.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 5 INGFGRIG 12
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 23.7 bits (51), Expect = 3.2
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
+NGFGR G
Sbjct: 6 VNGFGRIG 13
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 23.7 bits (51), Expect = 3.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 5 INGFGRIG 12
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 23.7 bits (51), Expect = 3.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 6 INGFGRIG 13
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 23.5 bits (50), Expect = 3.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
INGFGR G
Sbjct: 6 INGFGRIG 13
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 23.5 bits (50), Expect = 3.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 6 INGFGRTG 13
ING+GR G
Sbjct: 6 INGYGRIG 13
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 188
Score = 23.0 bits (49), Expect = 4.9
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 15 RKEASRPQWQGRNNNHWRWRLCCHVENVGVAS 46
++ +R ++ H + C V AS
Sbjct: 83 KESVNRQGKIELSSEHGFLTVGCREGKVFAAS 114
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 22.6 bits (48), Expect = 7.4
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 6 INGFGRTGNR 15
+NG+G G R
Sbjct: 7 VNGYGTIGKR 16
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 22.2 bits (47), Expect = 9.9
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 6 INGFGRTG 13
+NG+G G
Sbjct: 6 VNGYGTIG 13
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.428
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 339,839
Number of extensions: 12553
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 25
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)