BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037919
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 149/305 (48%), Gaps = 37/305 (12%)
Query: 98 KISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPS 157
K+S + S A+ LK L+I + P+ P L SL++L+L N +GEIP
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-----LKSLQYLSLAEN-KFTGEIPD 284
Query: 158 SLAEIAD-LRVLSLSQNNLQGNIPKELG-------------------------RLVNLEQ 191
L+ D L L LS N+ G +P G ++ L+
Sbjct: 285 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 192 LDLSYNNLSGEIPDEIGGM-ISLTVLDLSWNGLQGQVPPSL--GTLQLLQKIDLGSNKLV 248
LDLS+N SGE+P+ + + SL LDLS N G + P+L LQ++ L +N
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 249 GSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQN 308
G IPP + S LV L LS N ++G IP +L L +L+ L ++ N + IP L ++
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 309 LTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQ 368
L ++ + LTG IP+ S+ L +SL NN L+G +P +G L N L L LS+N
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN--LAILKLSNNS 522
Query: 369 LSGEL 373
SG +
Sbjct: 523 FSGNI 527
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 132/296 (44%), Gaps = 50/296 (16%)
Query: 99 ISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSS 158
+S I +L L L+ L ++ + + P + +LE L L N L+GEIPS
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFN-DLTGEIPSG 482
Query: 159 LAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDL 218
L+ +L +SLS N L G IPK +GRL NL L LS N+ SG IP E+G SL LDL
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 219 SWNGLQGQVPPSL--------------------------------GTLQLLQKI------ 240
+ N G +P ++ G L Q I
Sbjct: 543 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 602
Query: 241 --------DLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYH 292
++ S G P ++ LD+S N ++G IP+ + + L L + H
Sbjct: 603 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 662
Query: 293 NPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348
N I+ IP +G L+ L + +S L G IP S+L LT + L NNNLSG +P
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 129/287 (44%), Gaps = 49/287 (17%)
Query: 131 PTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190
P+ G+LS L L L+ N L GEIP L + L L L N+L G IP L NL
Sbjct: 432 PSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 191 QLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGS 250
+ LS N L+GEIP IG + +L +L LS N G +P LG + L +DL +N G+
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 251 IPPAIGKLS-----------RLVLL----------------------------------- 264
IP A+ K S R V +
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 610
Query: 265 DLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIP 324
+++ G T + +L + +N ++ IP +G++ L +++ ++G IP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 325 NFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG 371
+ L L L L +N L G +P ++ +L +ML +++LS+N LSG
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSAL--TMLTEIDLSNNNLSG 715
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 127/287 (44%), Gaps = 51/287 (17%)
Query: 138 SSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYN 197
++L+ L L +N +G+IP +L+ ++L L LS N L G IP LG L L L L N
Sbjct: 391 NTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 449
Query: 198 NLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGK 257
L GEIP E+ + +L L L +N L G++P L L I L +N+L G IP IG+
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 258 LSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL-------------- 303
L L +L LS N +G IP L + L +L + N N IP +
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Query: 304 ------------------GTLQNLTSISVSE---------CGLT-----GPIPNFFSSLN 331
G L I + C +T G F +
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 332 TLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEE 378
++ L + N LSG +P +GS+P L LNL HN +SG + P+E
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMP--YLFILNLGHNDISGSI--PDE 672
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 128/269 (47%), Gaps = 48/269 (17%)
Query: 151 LSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGM 210
LSG IPSSL ++ LR L L N L+G IP+EL + LE L L +N+L+GEIP +
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 211 ISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNC 270
+L + LS N L G++P +G L+ L + L +N G+IP +G L+ LDL+ N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 271 INGPIPETL---SGLQQLQYL----IVY-------------------------------- 291
NG IP + SG ++ VY
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 292 HNPINSRIPLFLG----TLQN---LTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLS 344
NP N ++ G T N + + +S L+G IP S+ L L+L +N++S
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 345 GTVPPSLGSLPNSMLDQLNLSHNQLSGEL 373
G++P +G L L+ L+LS N+L G +
Sbjct: 667 GSIPDEVGDLRG--LNILDLSSNKLDGRI 693
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 134/267 (50%), Gaps = 15/267 (5%)
Query: 113 LKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNP-----TLSGEIPSSLAEIADLRV 167
L +L + +S PVT + T G+ S L+ L + SN +SG + + E+ DL
Sbjct: 99 LTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 157
Query: 168 LSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQV 227
S+S N+ G + + L+ L +S N +SG++ ++ ++L LD+S N +
Sbjct: 158 NSISGANVVGWVLSD--GCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 213
Query: 228 PPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQY 287
P LG LQ +D+ NKL G AI + L LL++S N GPIP L+ LQY
Sbjct: 214 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 270
Query: 288 LIVYHNPINSRIPLFL-GTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGT 346
L + N IP FL G LT + +S G +P FF S + L +L+L +NN SG
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 347 VPPSLGSLPNSMLDQLNLSHNQLSGEL 373
+P L L L+LS N+ SGEL
Sbjct: 331 LPMDT-LLKMRGLKVLDLSFNEFSGEL 356
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 57/86 (66%)
Query: 192 LDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSI 251
LD+SYN LSG IP EIG M L +L+L N + G +P +G L+ L +DL SNKL G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 252 PPAIGKLSRLVLLDLSQNCINGPIPE 277
P A+ L+ L +DLS N ++GPIPE
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 33/190 (17%)
Query: 212 SLTVLDLSWNGLQGQVP--PSLGTLQLLQKIDLGSNKLV--GSIPPAIGKLSRLVLLDLS 267
SLT LDLS N L G V SLG+ L+ +++ SN L G + + KL+ L +LDLS
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 156
Query: 268 QNCINGP--IPETLS-GLQQLQYLIVYHNPINSRIPL---------------------FL 303
N I+G + LS G +L++L + N I+ + + FL
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 216
Query: 304 GTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLN 363
G L + +S L+G S+ L L++ +N G +PP LP L L+
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLS 272
Query: 364 LSHNQLSGEL 373
L+ N+ +GE+
Sbjct: 273 LAENKFTGEI 282
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 131 PTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190
P G++ L L L N +SG IP + ++ L +L LS N L G IP+ + L L
Sbjct: 646 PKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 191 QLDLSYNNLSGEIPD 205
++DLS NNLSG IP+
Sbjct: 705 EIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 149/305 (48%), Gaps = 37/305 (12%)
Query: 98 KISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPS 157
K+S + S A+ LK L+I + P+ P L SL++L+L N +GEIP
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-----LKSLQYLSLAEN-KFTGEIPD 287
Query: 158 SLAEIAD-LRVLSLSQNNLQGNIPKELG-------------------------RLVNLEQ 191
L+ D L L LS N+ G +P G ++ L+
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 192 LDLSYNNLSGEIPDEIGGM-ISLTVLDLSWNGLQGQVPPSL--GTLQLLQKIDLGSNKLV 248
LDLS+N SGE+P+ + + SL LDLS N G + P+L LQ++ L +N
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 249 GSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQN 308
G IPP + S LV L LS N ++G IP +L L +L+ L ++ N + IP L ++
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 309 LTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQ 368
L ++ + LTG IP+ S+ L +SL NN L+G +P +G L N L L LS+N
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN--LAILKLSNNS 525
Query: 369 LSGEL 373
SG +
Sbjct: 526 FSGNI 530
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 118/258 (45%), Gaps = 47/258 (18%)
Query: 137 LSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSY 196
+ +LE L L N L+GEIPS L+ +L +SLS N L G IPK +GRL NL L LS
Sbjct: 465 VKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 197 NNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSL------------------------- 231
N+ SG IP E+G SL LDL+ N G +P ++
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Query: 232 -------GTLQLLQKI--------------DLGSNKLVGSIPPAIGKLSRLVLLDLSQNC 270
G L Q I ++ S G P ++ LD+S N
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 271 INGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSL 330
++G IP+ + + L L + HN I+ IP +G L+ L + +S L G IP S+L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 331 NTLTALSLDNNNLSGTVP 348
LT + L NNNLSG +P
Sbjct: 704 TMLTEIDLSNNNLSGPIP 721
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 129/287 (44%), Gaps = 49/287 (17%)
Query: 131 PTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190
P+ G+LS L L L+ N L GEIP L + L L L N+L G IP L NL
Sbjct: 435 PSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 191 QLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGS 250
+ LS N L+GEIP IG + +L +L LS N G +P LG + L +DL +N G+
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 251 IPPAIGKLS-----------RLVLL----------------------------------- 264
IP A+ K S R V +
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 265 DLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIP 324
+++ G T + +L + +N ++ IP +G++ L +++ ++G IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 325 NFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG 371
+ L L L L +N L G +P ++ +L +ML +++LS+N LSG
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSAL--TMLTEIDLSNNNLSG 718
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 127/287 (44%), Gaps = 51/287 (17%)
Query: 138 SSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYN 197
++L+ L L +N +G+IP +L+ ++L L LS N L G IP LG L L L L N
Sbjct: 394 NTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 198 NLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGK 257
L GEIP E+ + +L L L +N L G++P L L I L +N+L G IP IG+
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 258 LSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL-------------- 303
L L +L LS N +G IP L + L +L + N N IP +
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 304 ------------------GTLQNLTSISVSE---------CGLT-----GPIPNFFSSLN 331
G L I + C +T G F +
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 332 TLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEE 378
++ L + N LSG +P +GS+P L LNL HN +SG + P+E
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMP--YLFILNLGHNDISGSI--PDE 675
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 128/269 (47%), Gaps = 48/269 (17%)
Query: 151 LSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGM 210
LSG IPSSL ++ LR L L N L+G IP+EL + LE L L +N+L+GEIP +
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 211 ISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNC 270
+L + LS N L G++P +G L+ L + L +N G+IP +G L+ LDL+ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 271 INGPIPETL---SGLQQLQYL----IVY-------------------------------- 291
NG IP + SG ++ VY
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 292 HNPINSRIPLFLG----TLQN---LTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLS 344
NP N ++ G T N + + +S L+G IP S+ L L+L +N++S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 345 GTVPPSLGSLPNSMLDQLNLSHNQLSGEL 373
G++P +G L L+ L+LS N+L G +
Sbjct: 670 GSIPDEVGDLRG--LNILDLSSNKLDGRI 696
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 137/268 (51%), Gaps = 17/268 (6%)
Query: 113 LKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNP-TLSGEIPSSLAEIADLRVLSLS 171
L +L + +S PVT + T G+ S L+ L + SN G++ L ++ L VL LS
Sbjct: 102 LTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 159
Query: 172 QNNLQGNIPKELGRLVN-----LEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQ 226
N++ G +G +++ L+ L +S N +SG++ ++ ++L LD+S N
Sbjct: 160 ANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 215
Query: 227 VPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQ 286
+P LG LQ +D+ NKL G AI + L LL++S N GPIP L+ LQ
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272
Query: 287 YLIVYHNPINSRIPLFL-GTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSG 345
YL + N IP FL G LT + +S G +P FF S + L +L+L +NN SG
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 346 TVPPSLGSLPNSMLDQLNLSHNQLSGEL 373
+P L L L+LS N+ SGEL
Sbjct: 333 ELPMDT-LLKMRGLKVLDLSFNEFSGEL 359
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 114/262 (43%), Gaps = 47/262 (17%)
Query: 109 KLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVL 168
+L Y+KTL + P+ ++L ++L SN L+GEIP + + +L +L
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL-SNNRLTGEIPKWIGRLENLAIL 519
Query: 169 SLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEI---GGMISLTVLD-------- 217
LS N+ GNIP ELG +L LDL+ N +G IP + G I+ +
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 218 --------------LSWNGLQ---------------------GQVPPSLGTLQLLQKIDL 242
L + G++ G P+ + +D+
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 243 GSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLF 302
N L G IP IG + L +L+L N I+G IP+ + L+ L L + N ++ RIP
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 303 LGTLQNLTSISVSECGLTGPIP 324
+ L LT I +S L+GPIP
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIP 721
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 57/86 (66%)
Query: 192 LDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSI 251
LD+SYN LSG IP EIG M L +L+L N + G +P +G L+ L +DL SNKL G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 252 PPAIGKLSRLVLLDLSQNCINGPIPE 277
P A+ L+ L +DLS N ++GPIPE
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 33/190 (17%)
Query: 212 SLTVLDLSWNGLQGQVP--PSLGTLQLLQKIDLGSNKLV--GSIPPAIGKLSRLVLLDLS 267
SLT LDLS N L G V SLG+ L+ +++ SN L G + + KL+ L +LDLS
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 159
Query: 268 QNCINGP--IPETLS-GLQQLQYLIVYHNPINSRIPL---------------------FL 303
N I+G + LS G +L++L + N I+ + + FL
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 219
Query: 304 GTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLN 363
G L + +S L+G S+ L L++ +N G +PP LP L L+
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLS 275
Query: 364 LSHNQLSGEL 373
L+ N+ +GE+
Sbjct: 276 LAENKFTGEI 285
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 131 PTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190
P G++ L L L N +SG IP + ++ L +L LS N L G IP+ + L L
Sbjct: 649 PKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 191 QLDLSYNNLSGEIPD 205
++DLS NNLSG IP+
Sbjct: 708 EIDLSNNNLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 6/221 (2%)
Query: 155 IPSSLAEIADLRVLSLSQ-NNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISL 213
IPSSLA + L L + NNL G IP + +L L L +++ N+SG IPD + + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 214 TVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVL-LDLSQNCIN 272
LD S+N L G +PPS+ +L L I N++ G+IP + G S+L + +S+N +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 273 GPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNT 332
G IP T + L L ++ + N + + G+ +N I +++ L + S N
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN- 245
Query: 333 LTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGEL 373
L L L NN + GT+P L L L LN+S N L GE+
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQL--KFLHSLNVSFNNLCGEI 284
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 3/219 (1%)
Query: 131 PTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190
P+ L L L + L G IP ++A++ L L ++ N+ G IP L ++ L
Sbjct: 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128
Query: 191 QLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTL-QLLQKIDLGSNKLVG 249
LD SYN LSG +P I + +L + N + G +P S G+ +L + + N+L G
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 250 SIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNL 309
IPP L+ L +DLS+N + G + Q + + N + + +G +NL
Sbjct: 189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNL 246
Query: 310 TSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348
+ + + G +P + L L +L++ NNL G +P
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 108/265 (40%), Gaps = 59/265 (22%)
Query: 61 CTETPWPGVECEIGEDDPSIFHVTKVHI-GPDIITPTCKISANISDALLKLPYLKTLSIF 119
C W GV C+ D + V + + G ++ P I +L LPYL L I
Sbjct: 33 CCNRTWLGVLCDT---DTQTYRVNNLDLSGLNLPKP-----YPIPSSLANLPYLNFLYIG 84
Query: 120 NCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNI 179
+++ V P L+ L +L + ++ +SG IP L++I L L S N L G +
Sbjct: 85 G--INNLVGPIPPAIAKLTQLHYLYI-THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141
Query: 180 PKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISL-TVLDLSWNGLQGQVPPSLGTLQL-- 236
P + L NL + N +SG IPD G L T + +S N L G++PP+ L L
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201
Query: 237 --------------------------------------------LQKIDLGSNKLVGSIP 252
L +DL +N++ G++P
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 253 PAIGKLSRLVLLDLSQNCINGPIPE 277
+ +L L L++S N + G IP+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 126/280 (45%), Gaps = 28/280 (10%)
Query: 101 ANISDALLKLPYLKT-----LSIFNCF--VSSPVTLSPTL-----FGALSSLEHLALYSN 148
N++ +L YL + +FNC VSS +S T+ F +HL L +
Sbjct: 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 338
Query: 149 PTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLS--GEIPDE 206
G+ P+ ++ L+ L+ + N GN E+ L +LE LDLS N LS G
Sbjct: 339 KF--GQFPT--LKLKSLKRLTFTSNK-GGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQS 392
Query: 207 IGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDL-GSNKLVGSIPPAIGKLSRLVLLD 265
G ISL LDLS+NG+ LG L+ L+ +D SN S L L+ LD
Sbjct: 393 DFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451
Query: 266 LSQNCINGPIPETLSGLQQLQYLIVYHNPINSR-IPLFLGTLQNLTSISVSECGLTGPIP 324
+S +GL L+ L + N +P L+NLT + +S+C L P
Sbjct: 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511
Query: 325 NFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNL 364
F+SL++L L++ +NN SL + P L+ L +
Sbjct: 512 TAFNSLSSLQVLNMSHNNFF-----SLDTFPYKCLNSLQV 546
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 133 LFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQL 192
+F LSSLE L + N +P E+ +L L LSQ L+ P L +L+ L
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 193 DLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQG-------QVPPSLGTLQLLQ 238
++S+NN + SL VLD S N + P SL L L Q
Sbjct: 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Query: 202 EIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRL 261
+IPD + S LDLS+N L+ S + LQ +DL ++ A LS L
Sbjct: 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 102
Query: 262 VLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTG 321
L L+ N I SGL LQ L+ + S +G L+ L ++V+ +
Sbjct: 103 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 162
Query: 322 -PIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSL 354
+P +FS+L L L L +N + L L
Sbjct: 163 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 104 SDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIA 163
S + P L+ L + C + T+ + +LS L L L NP S + + + ++
Sbjct: 69 SYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLS 124
Query: 164 DLRVLSLSQNNLQG--NIPKELGRLVNLEQLDLSYNNL-SGEIPDEIGGMISLTVLDLSW 220
L+ L + NL N P +G L L++L++++N + S ++P+ + +L LDLS
Sbjct: 125 SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182
Query: 221 NGLQGQVPPSLGTLQ 235
N +Q L L
Sbjct: 183 NKIQSIYCTDLRVLH 197
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 97 CKISANISDALLKLPYLKTLSIFNCFVSSPV-TLSPTLFGALSSLEHL-ALYSNPTLSGE 154
C+I A L +L TL + +P+ +L+ F LSSL+ L A+ +N
Sbjct: 86 CEIQTIEDGAYQSLSHLSTLIL----TGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 141
Query: 155 IPSSLAEIADLRVLSLSQNNLQG-NIPKELGRLVNLEQLDLSYNNL 199
P + + L+ L+++ N +Q +P+ L NLE LDLS N +
Sbjct: 142 FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 125/280 (44%), Gaps = 28/280 (10%)
Query: 101 ANISDALLKLPYLKT-----LSIFNCF--VSSPVTLSPTL-----FGALSSLEHLALYSN 148
N++ +L YL + +FNC VSS +S T+ F +HL L +
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 149 PTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLS--GEIPDE 206
G+ P+ ++ L+ L+ + N GN E+ L +LE LDLS N LS G
Sbjct: 315 KF--GQFPT--LKLKSLKRLTFTSNK-GGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQS 368
Query: 207 IGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDL-GSNKLVGSIPPAIGKLSRLVLLD 265
G SL LDLS+NG+ LG L+ L+ +D SN S L L+ LD
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 266 LSQNCINGPIPETLSGLQQLQYLIVYHNPINSR-IPLFLGTLQNLTSISVSECGLTGPIP 324
+S +GL L+ L + N +P L+NLT + +S+C L P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 325 NFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNL 364
F+SL++L L++ +NN SL + P L+ L +
Sbjct: 488 TAFNSLSSLQVLNMSHNNFF-----SLDTFPYKCLNSLQV 522
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 133 LFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQL 192
+F LSSLE L + N +P E+ +L L LSQ L+ P L +L+ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 193 DLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQG-------QVPPSLGTLQLLQ 238
++S+NN + SL VLD S N + P SL L L Q
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Query: 202 EIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRL 261
+IPD + S LDLS+N L+ S + LQ +DL ++ A LS L
Sbjct: 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 262 VLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTG 321
L L+ N I SGL LQ L+ + S +G L+ L ++V+ +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 322 -PIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSL 354
+P +FS+L L L L +N + L L
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 104 SDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIA 163
S + P L+ L + C + T+ + +LS L L L NP S + + + ++
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLS 100
Query: 164 DLRVLSLSQNNLQG--NIPKELGRLVNLEQLDLSYNNL-SGEIPDEIGGMISLTVLDLSW 220
L+ L + NL N P +G L L++L++++N + S ++P+ + +L LDLS
Sbjct: 101 SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 221 NGLQGQVPPSLGTLQ 235
N +Q L L
Sbjct: 159 NKIQSIYCTDLRVLH 173
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 97 CKISANISDALLKLPYLKTLSIFNCFVSSPV-TLSPTLFGALSSLEHL-ALYSNPTLSGE 154
C+I A L +L TL + +P+ +L+ F LSSL+ L A+ +N
Sbjct: 62 CEIQTIEDGAYQSLSHLSTLIL----TGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117
Query: 155 IPSSLAEIADLRVLSLSQNNLQG-NIPKELGRLVNLEQLDLSYNNL 199
P + + L+ L+++ N +Q +P+ L NLE LDLS N +
Sbjct: 118 FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 125/278 (44%), Gaps = 31/278 (11%)
Query: 101 ANISDALLKLPYLKT-----LSIFNCF--VSSPVTLSPTL-----FGALSSLEHLALYSN 148
N++ +L YL + +FNC VSS +S T+ F +HL L +
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 149 PTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLS--GEIPDE 206
G+ P+ ++ L+ L+ + N GN E+ L +LE LDLS N LS G
Sbjct: 315 KF--GQFPT--LKLKSLKRLTFTSNK-GGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQS 368
Query: 207 IGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDL-GSNKLVGSIPPAIGKLSRLVLLD 265
G SL LDLS+NG+ LG L+ L+ +D SN S L L+ LD
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 266 LSQNCINGPIPETLSGLQQLQYLIVYHNPINSR-IPLFLGTLQNLTSISVSECGLTGPIP 324
+S +GL L+ L + N +P L+NLT + +S+C L P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 325 NFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQL 362
F+SL++L L++ +N L S+P+ + D+L
Sbjct: 488 TAFNSLSSLQVLNMASNQLK--------SVPDGIFDRL 517
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Query: 202 EIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRL 261
+IPD + S LDLS+N L+ S + LQ +DL ++ A LS L
Sbjct: 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 262 VLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTG 321
L L+ N I SGL LQ L+ + S +G L+ L ++V+ +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 322 -PIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSL 354
+P +FS+L L L L +N + L L
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 133 LFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQL 192
+F LSSLE L + N +P E+ +L L LSQ L+ P L +L+ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 193 DLSYNNLSGEIPDEIGGMISLTVLDLSW 220
+++ N L +PD G LT L W
Sbjct: 500 NMASNQLKS-VPD--GIFDRLTSLQKIW 524
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 104 SDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIA 163
S + P L+ L + C + T+ + +LS L L L NP S + + + ++
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLS 100
Query: 164 DLRVLSLSQNNLQG--NIPKELGRLVNLEQLDLSYNNL-SGEIPDEIGGMISLTVLDLSW 220
L+ L + NL N P +G L L++L++++N + S ++P+ + +L LDLS
Sbjct: 101 SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 221 NGLQGQVPPSLGTLQ 235
N +Q L L
Sbjct: 159 NKIQSIYCTDLRVLH 173
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 97 CKISANISDALLKLPYLKTLSIFNCFVSSPV-TLSPTLFGALSSLEHL-ALYSNPTLSGE 154
C+I A L +L TL + +P+ +L+ F LSSL+ L A+ +N
Sbjct: 62 CEIQTIEDGAYQSLSHLSTLIL----TGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117
Query: 155 IPSSLAEIADLRVLSLSQNNLQG-NIPKELGRLVNLEQLDLSYNNL 199
P + + L+ L+++ N +Q +P+ L NLE LDLS N +
Sbjct: 118 FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 93/214 (43%), Gaps = 16/214 (7%)
Query: 155 IPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLS--GEIPDEIGGMIS 212
IPSS L L N LQ +L L +L LS N LS G G S
Sbjct: 26 IPSSATR------LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79
Query: 213 LTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIG-KLSRLVLLDLSQNCI 271
L LDLS+NG+ LG L+ L+ +D + L ++ L L+ LD+S
Sbjct: 80 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 272 NGPIPETLSGLQQLQYLIVYHNPINSR-IPLFLGTLQNLTSISVSECGLTGPIPNFFSSL 330
+GL L+ L + N +P L+NLT + +S+C L P F+SL
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 331 NTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNL 364
++L L++ +NN SL + P L+ L +
Sbjct: 199 SSLQVLNMSHNNF-----FSLDTFPYKCLNSLQV 227
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 133 LFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQL 192
+F LSSLE L + N +P E+ +L L LSQ L+ P L +L+ L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
Query: 193 DLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQG-------QVPPSLGTLQLLQ 238
++S+NN + SL VLD S N + P SL L L Q
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%)
Query: 134 FGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLD 193
F L+ LE L L N L P++ + L L L + LQ P L L+ L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 194 LSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPP 253
L N L D + +LT L L N + + L L ++ L N++ P
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 254 AIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNP 294
A L RL+ L L N ++ E L+ L+ LQYL + NP
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 83/205 (40%), Gaps = 6/205 (2%)
Query: 190 EQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVG 249
+++ L N +S +LT+L L N L + L LL+++DL N +
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 250 SIPPA-IGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQN 308
S+ PA L RL L L + + P GL LQYL + N + + L N
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 309 LTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQ 368
LT + + ++ F L++L L L N ++ P + L M L L N
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM--TLYLFANN 212
Query: 369 LSGELQFPEEFIERLGERLDVRGND 393
LS P E + L +R ND
Sbjct: 213 LSA---LPTEALAPLRALQYLRLND 234
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%)
Query: 134 FGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLD 193
F L+ LE L L N L P++ + L L L + LQ P L L+ L
Sbjct: 75 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 134
Query: 194 LSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPP 253
L N L D + +LT L L N + + L L ++ L N++ P
Sbjct: 135 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
Query: 254 AIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNP 294
A L RL+ L L N ++ E L+ L+ LQYL + NP
Sbjct: 195 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 235
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 83/205 (40%), Gaps = 6/205 (2%)
Query: 190 EQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVG 249
+++ L N +S +LT+L L N L + L LL+++DL N +
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 250 SIPPA-IGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQN 308
S+ PA L RL L L + + P GL LQYL + N + + L N
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 309 LTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQ 368
LT + + ++ F L++L L L N ++ P + L M L L N
Sbjct: 154 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM--TLYLFANN 211
Query: 369 LSGELQFPEEFIERLGERLDVRGND 393
LS P E + L +R ND
Sbjct: 212 LSA---LPTEALAPLRALQYLRLND 233
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 157 SSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEI-GGMISLTV 215
S+L E+ +L L L+ N LQ +L NL++L L N L +PD + + +LT
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTY 137
Query: 216 LDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAI-GKLSRLVLLDLSQNCINGP 274
L+L+ N LQ L L ++DL N+L S+P + KL++L L L QN +
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 275 IPETLSGLQQLQYLIVYHNPINSRIP 300
L LQY+ ++ NP + P
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 116/263 (44%), Gaps = 24/263 (9%)
Query: 117 SIFNCFVS-SPVTLSPTLFGAL-SSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNN 174
+ F CF + L+ T L S ++ L L LS L +I+ SL+
Sbjct: 269 TTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLY 328
Query: 175 LQGNIPK-ELG-----RLVNLEQLDLSYNNLSGEIPD----EIGGMISLTVLDLSWN--- 221
++GN+ K LG +L NL+ LDLS+N++ E D ++ + L L+LS N
Sbjct: 329 IRGNVKKLHLGVGCLEKLGNLQTLDLSHNDI--EASDCCSLQLKNLSHLQTLNLSHNEPL 386
Query: 222 GLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPA-IGKLSRLVLLDLSQNCINGPIPETLS 280
GLQ Q L+LL DL +L + P + L L +L+L+ ++ L+
Sbjct: 387 GLQSQAFKECPQLELL---DLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLA 443
Query: 281 GLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISV---SECGLTGPIPNFFSSLNTLTALS 337
GL L++L + N LQ + S+ V S CGL F SL ++ +
Sbjct: 444 GLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVD 503
Query: 338 LDNNNLSGTVPPSLGSLPNSMLD 360
L +N+L+ SL L L+
Sbjct: 504 LSHNSLTCDSIDSLSHLKGIYLN 526
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 111/272 (40%), Gaps = 52/272 (19%)
Query: 137 LSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKE----LGRLVNLEQL 192
L +LE L L SN S + P +L+VL QNN I +E L + +NL L
Sbjct: 125 LENLESLYLGSNHISSIKFPKDFPA-RNLKVLDF-QNNAIHYISREDMRSLEQAINLS-L 181
Query: 193 DLSYNNLSG-EIPD---------EIGGMISLTVLDLSWNGLQGQVPPSL--GTLQLLQKI 240
+ + NN+ G E+ GG +L+V+ +NGLQ SL GT + +
Sbjct: 182 NFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVI---FNGLQNSTTQSLWLGTFEDIDDE 238
Query: 241 DLGSNKLVGSIPPAIGKL------------------SRLVLLDLSQNCINGPIPETLSGL 282
D+ S L G ++ L ++L LDL+ + G +P + GL
Sbjct: 239 DISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGL 297
Query: 283 QQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNF------FSSLNTLTAL 336
L+ L++ N + + +LT + + G + L L L
Sbjct: 298 NLLKKLVLSVNHFDQLCQISAANFPSLTHLYIR-----GNVKKLHLGVGCLEKLGNLQTL 352
Query: 337 SLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQ 368
L +N++ + SL S L LNLSHN+
Sbjct: 353 DLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE 384
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 74/181 (40%)
Query: 114 KTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQN 173
+ L+I ++ + F L+ LE L L N L P++ + L L L +
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 174 NLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGT 233
LQ P L L+ L L NNL + + +LT L L N + +
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 234 LQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHN 293
L L ++ L N + P A L RL+ L L N ++ E L L+ LQYL + N
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Query: 294 P 294
P
Sbjct: 235 P 235
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 68/186 (36%), Gaps = 1/186 (0%)
Query: 157 SSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYN-NLSGEIPDEIGGMISLTV 215
+S +L +L L N L G L LEQLDLS N L P G+ L
Sbjct: 49 ASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHT 108
Query: 216 LDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPI 275
L L GLQ P L LQ + L N L L L L L N I
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVP 168
Query: 276 PETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTA 335
GL L L+++ N + P L L ++ + L+ L +L
Sbjct: 169 EHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQY 228
Query: 336 LSLDNN 341
L L++N
Sbjct: 229 LRLNDN 234
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 76/183 (41%), Gaps = 6/183 (3%)
Query: 212 SLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGK-LSRLVLLDLSQNC 270
+LT+L L N L G + L LL+++DL N + + P + L L L L +
Sbjct: 56 NLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 271 INGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSL 330
+ P GL LQYL + N + + L NLT + + + + F L
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGL 175
Query: 331 NTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVR 390
++L L L N+++ P + L M L L N LS P E + L +R
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLM--TLYLFANNLS---MLPAEVLVPLRSLQYLR 230
Query: 391 GND 393
ND
Sbjct: 231 LND 233
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 88/213 (41%), Gaps = 4/213 (1%)
Query: 159 LAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDL 218
A L L L++N + P L NL L L N L G+ +LT LD+
Sbjct: 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111
Query: 219 SWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPET 278
S N + + L L+ +++G N LV A L+ L L L + + E
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171
Query: 279 LSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSEC-GLTGPIPNFFSSLNTLTALS 337
LS L L L + H IN+ L L + +S L PN LN LT+LS
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLS 230
Query: 338 LDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLS 370
+ + NL T P L L LNLS+N +S
Sbjct: 231 ITHCNL--TAVPYLAVRHLVYLRFLNLSYNPIS 261
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 4/176 (2%)
Query: 192 LDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSI 251
LDL N + DE L L+L+ N + P + L L+ + L SN+L I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLI 95
Query: 252 PPAIGK-LSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLT 310
P + LS L LD+S+N I + L L+ L V N + L +L
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 311 SISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSH 366
+++ +C LT S L+ L L L + N++ S L L L +SH
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL--YRLKVLEISH 209
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 2/169 (1%)
Query: 215 VLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGP 274
+LDL N ++ + L++++L N + P A L L L L N +
Sbjct: 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95
Query: 275 IPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLT 334
+GL L L + N I + L NL S+ V + L FS LN+L
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 335 ALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERL 383
L+L+ NL+ +L L ++ L L H ++ + + + RL
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIV--LRLRHLNINAIRDYSFKRLYRL 202
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 23/192 (11%)
Query: 127 VTLSPTLFGALSSLEHLALYSN--PTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELG 184
V +S F L+SLE L L ++ E S L + LR+ L+ N ++ K L
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200
Query: 185 RL---------------------VNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGL 223
RL +NL L +++ NL+ + ++ L L+LS+N +
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Query: 224 QGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQ 283
L L LQ+I L +L P A L+ L +L++S N + +
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320
Query: 284 QLQYLIVYHNPI 295
L+ LI+ NP+
Sbjct: 321 NLETLILDSNPL 332
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 148/335 (44%), Gaps = 53/335 (15%)
Query: 63 ETPWPGVECEIGEDDPSIFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLS--IFN 120
++ W G ++ ++D I P + C++S + L+ Y +S F+
Sbjct: 228 QSLWLGTFEDMDDED----------ISPAVFEGLCEMS--VESINLQKHYFFNISSNTFH 275
Query: 121 CF--------VSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQ 172
CF ++ ++ P+ LS+L+ L L +N +L +I+ SL+
Sbjct: 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF------ENLCQISASNFPSLTH 329
Query: 173 NNLQGNIPK-ELG-----RLVNLEQLDLSYNNLSGEIPD----EIGGMISLTVLDLSWN- 221
+++GN + ELG L NL +LDLS++++ E D ++ + L L+LS+N
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDI--ETSDCCNLQLRNLSHLQSLNLSYNE 387
Query: 222 --GLQGQVPPSLGTLQLLQKIDLGSNKL-VGSIPPAIGKLSRLVLLDLSQNCINGPIPET 278
L+ + L+LL DL +L V L L +L+LS + ++ +
Sbjct: 388 PLSLKTEAFKECPQLELL---DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444
Query: 279 LSGLQQLQYLIVYHNPI---NSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTA 335
GL LQ+L + N N + L TL L + +S C L+ + F+SL +
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504
Query: 336 LSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLS 370
+ L +N L+ + +L L LNL+ N +S
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGIY---LNLASNHIS 536
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 146 YSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKEL--GRLVNLEQLDLSYNNLSGEI 203
++ + + + + L+ L L +N L+ L + +LE LD+S N+L+
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419
Query: 204 PDEIGGMI-SLTVLDLSWNGLQGQV----PPSLGTLQLLQKIDLGSNKLVGSIPPAIGKL 258
D S+ VL+LS N L G V PP + L DL +N+++ SIP + L
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL------DLHNNRIM-SIPKDVTHL 472
Query: 259 SRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIP 300
L L+++ N + L LQY+ ++ NP + P
Sbjct: 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 140 LEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNL 199
LE + YSN L+ +P L + LSLSQN++ ++ L L L LS+N +
Sbjct: 32 LESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88
Query: 200 SGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKL-VGSIPPAIGKL 258
L LD+S N LQ S + L+ +DL N V + G L
Sbjct: 89 RSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNL 145
Query: 259 SRLVLLDLS 267
++L L LS
Sbjct: 146 TKLTFLGLS 154
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 119/281 (42%), Gaps = 53/281 (18%)
Query: 136 ALSSLEHLALYSNPTLSGEIPSSLAE-IADLRVLSLSQNNLQGNIPKELGRLVNLEQLDL 194
A SS+ HL L S + S + E + DL+VL+L+ N + + L NL+ L+L
Sbjct: 264 ARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321
Query: 195 SYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKL-----VG 249
SYN L G+ + +DL N + + L+ LQ +DL N L +
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381
Query: 250 SIPPAIGKLSRLV----------LLDLSQNCI-NGPIPETLSGLQQLQYLIVYHNPINS- 297
SIP ++LV L+ LS+N + N I L + LQ LI+ N +S
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441
Query: 298 ---RIP--------LFLGT------------------LQNLTSISVSECGLTGPIPNFFS 328
+ P LFLG L +L + ++ L P FS
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501
Query: 329 SLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQL 369
L L LSL++N L+ S LP + L+ L++S NQL
Sbjct: 502 HLTALRGLSLNSNRLTVL---SHNDLP-ANLEILDISRNQL 538
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 158 SLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDE--IGGMISLTV 215
+ + +LR+L L + + P L +L +L L + LS + + + +LT
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 216 LDLSWNGLQG-QVPPSLGTLQLLQKIDLGSNKL 247
LDLS N ++ + PS G L L+ ID SN++
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 146 YSNPTLSGEIPSSLAEIADLRVLSLSQNNLQ--GNIPKELGRLVNLEQLDLSYNNLS-GE 202
+SN L+ + + + +L L L N L+ I + ++ +L+QLD+S N++S E
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390
Query: 203 IPDEIGGMISLTVLDLSWNGLQGQV----PPSLGTLQLLQKIDLGSNKLVGSIPPAIGKL 258
+ SL L++S N L + PP + L DL SNK + SIP + KL
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL------DLHSNK-IKSIPKQVVKL 443
Query: 259 SRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIP 300
L L+++ N + L LQ + ++ NP + P
Sbjct: 444 EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 238 QKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINS 297
+K+DL SNKL A +L++L LL L+ N + L+ L+ L V N + +
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 298 RIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNS 357
L NL + + L P F SL LT LSL N L SLP
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ--------SLPKG 151
Query: 358 MLD------QLNLSHNQLSGELQFPEEFIERLGE 385
+ D +L L +NQL + PE ++L E
Sbjct: 152 VFDKLTSLKELRLYNNQLK---RVPEGAFDKLTE 182
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 137/303 (45%), Gaps = 22/303 (7%)
Query: 112 YLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSN----PTLSGEIPSSLAEIADLRV 167
+LK L N + + +F L +L++L+L ++ TL+ E SLA + L +
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHI 385
Query: 168 LSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIP-DEIGGMISLTVLDLSWNGLQGQ 226
L+L++N + L +LE LDL N + E+ E G+ ++ + LS+N
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445
Query: 227 VPPSLGTLQLLQKIDLGSNKL--VGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQ 284
S + LQ++ L L V S P L L +LDLS N I + L GL++
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505
Query: 285 LQYLIVYHNPINSRI--------PL-FLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTA 335
L+ L + HN + +R+ P+ FL L +L +++ G F L L
Sbjct: 506 LEILDLQHNNL-ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564
Query: 336 LSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG-ELQFPEEFIERLGERLDVRGNDK 394
+ L NNL T+P S+ + S L LNL N ++ E + L E LD+R N
Sbjct: 565 IDLGLNNL-NTLPASVFNNQVS-LKSLNLQKNLITSVEKKVFGPAFRNLTE-LDMRFNPF 621
Query: 395 LCT 397
CT
Sbjct: 622 DCT 624
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 129 LSPTLFGALSSLEHLALYS---NPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKE-LG 184
SP F A+ L L L + P+L+ ++ LA + +R LSLS + L LG
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNTTFLG 244
Query: 185 -RLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
+ NL LDLSYNNL+ D + L L +N +Q SL L ++ ++L
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304
Query: 244 SNKLVGSIP----PAIGKLSRLVL-----LDLSQNCINGPIPETLSGLQQLQYL 288
+ SI P I S L L++ N I G +GL L+YL
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 3/184 (1%)
Query: 187 VNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNK 246
V+ E D S+ L+ ++PD++ I TVL+L+ N L+ + L +D+G N
Sbjct: 4 VSHEVADCSHLKLT-QVPDDLPTNI--TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 247 LVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTL 306
+ P KL L +L+L N ++ +T + L L + N I
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 307 QNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSH 366
+NL ++ +S GL+ L L L L NN + L NS L +L LS
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 367 NQLS 370
NQ+
Sbjct: 181 NQIK 184
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 137/303 (45%), Gaps = 22/303 (7%)
Query: 112 YLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSN----PTLSGEIPSSLAEIADLRV 167
+LK L N + + +F L +L++L+L ++ TL+ E SLA + L +
Sbjct: 332 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHI 390
Query: 168 LSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIP-DEIGGMISLTVLDLSWNGLQGQ 226
L+L++N + L +LE LDL N + E+ E G+ ++ + LS+N
Sbjct: 391 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 450
Query: 227 VPPSLGTLQLLQKIDLGSNKL--VGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQ 284
S + LQ++ L L V S P L L +LDLS N I + L GL++
Sbjct: 451 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 510
Query: 285 LQYLIVYHNPINSRI--------PL-FLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTA 335
L+ L + HN + +R+ P+ FL L +L +++ G F L L
Sbjct: 511 LEILDLQHNNL-ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 569
Query: 336 LSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG-ELQFPEEFIERLGERLDVRGNDK 394
+ L NNL T+P S+ + S L LNL N ++ E + L E LD+R N
Sbjct: 570 IDLGLNNL-NTLPASVFNNQVS-LKSLNLQKNLITSVEKKVFGPAFRNLTE-LDMRFNPF 626
Query: 395 LCT 397
CT
Sbjct: 627 DCT 629
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 129 LSPTLFGALSSLEHLALYS---NPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKE-LG 184
SP F A+ L L L + P+L+ ++ LA + +R LSLS + L LG
Sbjct: 191 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNTTFLG 249
Query: 185 -RLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
+ NL LDLSYNNL+ D + L L +N +Q SL L ++ ++L
Sbjct: 250 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 309
Query: 244 SNKLVGSIP----PAIGKLSRLVL-----LDLSQNCINGPIPETLSGLQQLQYL 288
+ SI P I S L L++ N I G +GL L+YL
Sbjct: 310 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 363
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 3/184 (1%)
Query: 187 VNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNK 246
V+ E D S+ L+ ++PD++ I TVL+L+ N L+ + L +D+G N
Sbjct: 9 VSHEVADCSHLKLT-QVPDDLPTNI--TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 65
Query: 247 LVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTL 306
+ P KL L +L+L N ++ +T + L L + N I
Sbjct: 66 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 125
Query: 307 QNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSH 366
+NL ++ +S GL+ L L L L NN + L NS L +L LS
Sbjct: 126 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 185
Query: 367 NQLS 370
NQ+
Sbjct: 186 NQIK 189
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 137/303 (45%), Gaps = 22/303 (7%)
Query: 112 YLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSN----PTLSGEIPSSLAEIADLRV 167
+LK L N + + +F L +L++L+L ++ TL+ E SLA + L +
Sbjct: 337 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHI 395
Query: 168 LSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIP-DEIGGMISLTVLDLSWNGLQGQ 226
L+L++N + L +LE LDL N + E+ E G+ ++ + LS+N
Sbjct: 396 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 455
Query: 227 VPPSLGTLQLLQKIDLGSNKL--VGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQ 284
S + LQ++ L L V S P L L +LDLS N I + L GL++
Sbjct: 456 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 515
Query: 285 LQYLIVYHNPINSRI--------PL-FLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTA 335
L+ L + HN + +R+ P+ FL L +L +++ G F L L
Sbjct: 516 LEILDLQHNNL-ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 574
Query: 336 LSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG-ELQFPEEFIERLGERLDVRGNDK 394
+ L NNL T+P S+ + S L LNL N ++ E + L E LD+R N
Sbjct: 575 IDLGLNNL-NTLPASVFNNQVS-LKSLNLQKNLITSVEKKVFGPAFRNLTE-LDMRFNPF 631
Query: 395 LCT 397
CT
Sbjct: 632 DCT 634
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 129 LSPTLFGALSSLEHLALYS---NPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKE-LG 184
SP F A+ L L L + P+L+ ++ LA + +R LSLS + L LG
Sbjct: 196 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNTTFLG 254
Query: 185 -RLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
+ NL LDLSYNNL+ D + L L +N +Q SL L ++ ++L
Sbjct: 255 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 314
Query: 244 SNKLVGSIP----PAIGKLSRLVL-----LDLSQNCINGPIPETLSGLQQLQYL 288
+ SI P I S L L++ N I G +GL L+YL
Sbjct: 315 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 368
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 3/183 (1%)
Query: 187 VNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNK 246
V+ E D S+ L+ ++PD++ I TVL+L+ N L+ + L +D+G N
Sbjct: 14 VSHEVADCSHLKLT-QVPDDLPTNI--TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 70
Query: 247 LVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTL 306
+ P KL L +L+L N ++ +T + L L + N I
Sbjct: 71 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 130
Query: 307 QNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSH 366
+NL ++ +S GL+ L L L L NN + L NS L +L LS
Sbjct: 131 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 190
Query: 367 NQL 369
NQ+
Sbjct: 191 NQI 193
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 38/185 (20%)
Query: 186 LVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSN 245
L NL L+L N ++ P + + +T L+LS N L+ ++ LQ ++ +DL S
Sbjct: 68 LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 123
Query: 246 KLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGT 305
++ P + LS L +L L N I P L+GL LQYL + +N +N PL
Sbjct: 124 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTPL---- 175
Query: 306 LQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLS 365
++L+ LT L D+N +S P L SLPN L +++L
Sbjct: 176 ----------------------ANLSKLTTLRADDNKISDISP--LASLPN--LIEVHLK 209
Query: 366 HNQLS 370
NQ+S
Sbjct: 210 DNQIS 214
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 110/258 (42%), Gaps = 24/258 (9%)
Query: 117 SIFNCF--VSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNN 174
S F CF V + L G S +E + L+ L +I SL
Sbjct: 271 STFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLY 330
Query: 175 LQGNIPK-ELG-----RLVNLEQLDLSYNNLSGEIPD----EIGGMISLTVLDLSWN--- 221
++GN+ K +LG +L NL++LDLS++++ E D ++ + L L+LS+N
Sbjct: 331 IKGNMRKLDLGTRCLEKLENLQKLDLSHSDI--EASDCCNLQLKNLRHLQYLNLSYNEPL 388
Query: 222 GLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPA-IGKLSRLVLLDLSQNCINGPIPETLS 280
GL+ Q L+LL D+ L P + L L +L+LS ++ L+
Sbjct: 389 GLEDQAFKECPQLELL---DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLA 445
Query: 281 GLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISV---SECGLTGPIPNFFSSLNTLTALS 337
GLQ L++L + N LQ + S+ + S C L F L + L
Sbjct: 446 GLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLD 505
Query: 338 LDNNNLSGTVPPSLGSLP 355
L +N+L+G +L L
Sbjct: 506 LSHNSLTGDSMDALSHLK 523
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 110 LPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSS--LAEIADLRV 167
L L+ L++ +C + T + L L L HL L N G I + L + L +
Sbjct: 423 LHLLRVLNLSHCLLD---TSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI 479
Query: 168 LSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQV 227
L LS NL + L N+ LDLS+N+L+G+ D + + L L+++ N ++ +
Sbjct: 480 LILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIR-II 537
Query: 228 PPSL 231
PP L
Sbjct: 538 PPHL 541
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 202 EIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRL 261
+IPD + S LDLSWN L+ S + LQ +DL ++ A LS L
Sbjct: 23 KIPDNLP--FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 80
Query: 262 VLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTG 321
L L+ N I SGL LQ L+ + S +G L+ L ++V+ +
Sbjct: 81 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 140
Query: 322 -PIPNFFSSLNTLTALSLDNNNL 343
+P +FS+L L L L +N +
Sbjct: 141 FKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 97 CKISANISDALLKLPYLKTLSIFNCFVSSPV-TLSPTLFGALSSLEHL-ALYSNPTLSGE 154
C+I A L +L TL + +P+ +L+ F LSSL+ L A+ +N
Sbjct: 64 CEIQTIEDGAYQSLSHLSTLIL----TGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 119
Query: 155 IPSSLAEIADLRVLSLSQNNLQG-NIPKELGRLVNLEQLDLSYNNL 199
P + + L+ L+++ N +Q +P+ L NLE LDLS N +
Sbjct: 120 FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 202 EIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRL 261
+IPD + S LDLSWN L+ S + LQ +DL ++ A LS L
Sbjct: 22 KIPDNLP--FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 79
Query: 262 VLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTG 321
L L+ N I SGL LQ L+ + S +G L+ L ++V+ +
Sbjct: 80 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 139
Query: 322 -PIPNFFSSLNTLTALSLDNNNL 343
+P +FS+L L L L +N +
Sbjct: 140 FKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 97 CKISANISDALLKLPYLKTLSIFNCFVSSPV-TLSPTLFGALSSLEHL-ALYSNPTLSGE 154
C+I A L +L TL + +P+ +L+ F LSSL+ L A+ +N
Sbjct: 63 CEIQTIEDGAYQSLSHLSTLIL----TGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 118
Query: 155 IPSSLAEIADLRVLSLSQNNLQG-NIPKELGRLVNLEQLDLSYNNL 199
P + + L+ L+++ N +Q +P+ L NLE LDLS N +
Sbjct: 119 FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 84/205 (40%), Gaps = 21/205 (10%)
Query: 129 LSPTLFGALSSLEHLALYS---NPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELG- 184
SP F + L L L + NP L+ ++ L+ + ++ LSL+ N L
Sbjct: 186 FSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTS-IQNLSLANNQLLATSESTFSG 244
Query: 185 -RLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
+ NL QLDLSYNNL + SL L L +N +Q P S L L+ + L
Sbjct: 245 LKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK 304
Query: 244 SNKLVGSIPPA---------IGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNP 294
S+ A L L L++ N I T +GL L+YL +
Sbjct: 305 RAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSL---- 360
Query: 295 INSRIPLFLGTLQNLTSISVSECGL 319
S+ L TL N T +S++ L
Sbjct: 361 --SKTFTSLQTLTNETFVSLAHSPL 383
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 117 SIFNCFVS--SPVTLSPTLFGALSSLEHLALYSNPTLSGEI-PSSLAEIADLRVLSLSQN 173
+IF ++S + LS + F + SL+ L L + +I PS + +L +L LS N
Sbjct: 431 NIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNN 490
Query: 174 NLQGNIPKELGR-LVNLEQLDLSYNNLS--------GEIPDEIGGMISLTVLDLSWNGL 223
N+ NI ++L L NLE LD +NNL+ G + + G+ L +L+L NGL
Sbjct: 491 NI-ANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGL 548
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 117/300 (39%), Gaps = 44/300 (14%)
Query: 97 CKISANISD-ALLKLPYL-----KTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPT 150
C + N++D + LKL ++ +++ N + L PT F S L L N +
Sbjct: 2 CTVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFN-S 60
Query: 151 LSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGM 210
+S P + L+VL+L N L + NL +LDL N++ +
Sbjct: 61 ISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQ 120
Query: 211 ISLTVLDLSWNGLQGQVPPSLGT-----------------LQL------------LQKID 241
+L LDLS NGL LGT L L L+K+D
Sbjct: 121 KNLIKLDLSHNGLSS---TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLD 177
Query: 242 LGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLS---GLQQLQYLIVYHNPINSR 298
L SN L P + +L L L+ +N + E L +Q L + +N + +
Sbjct: 178 LSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLAT 237
Query: 299 IPLFLGTLQ--NLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPN 356
L+ NLT + +S L FS L +L LSL+ NN+ P S L N
Sbjct: 238 SESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSN 297
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 145 LYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIP 204
LY N E+P+ + +++LRVL LS N L +P ELG L+ ++N+ +P
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLP 309
Query: 205 DEIGGMISLTVLDLSWNGLQGQ 226
E G + +L L + N L+ Q
Sbjct: 310 WEFGNLCNLQFLGVEGNPLEKQ 331
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 84/184 (45%), Gaps = 9/184 (4%)
Query: 165 LRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLS--GEIPDEIGGMISLTVLDLSWNG 222
L+ L+L+ N +G+I + L +L LDLS N LS G G SL LDLS+NG
Sbjct: 325 LKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 382
Query: 223 LQGQVPPSLGTLQLLQKIDLGSNKLVGSIP-PAIGKLSRLVLLDLSQNCINGPIPETLSG 281
+G L+ LQ +D + L A L +L+ LD+S G
Sbjct: 383 AIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 441
Query: 282 LQQLQYLIVYHNPI--NSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLD 339
L L L + N N+ +F T NLT + +S+C L F +L+ L L++
Sbjct: 442 LTSLNTLKMAGNSFKDNTLSNVFANT-TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 500
Query: 340 NNNL 343
+NNL
Sbjct: 501 HNNL 504
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 3/142 (2%)
Query: 201 GEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSR 260
++PD+I S +DLS+N L+ S LQ +DL ++ A L
Sbjct: 19 SKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 76
Query: 261 LVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGL- 319
L L L+ N I P + SGL L+ L+ + S +G L L ++V+ +
Sbjct: 77 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 136
Query: 320 TGPIPNFFSSLNTLTALSLDNN 341
+ +P +FS+L L + L N
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSYN 158
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 133 LFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQL 192
+F L+SL L + N + + A +L L LS+ L+ L L+ L
Sbjct: 438 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 497
Query: 193 DLSYNNLSGEIPDEIGGMISLTVLDLSWN------GLQGQVPPSLGTLQL 236
++S+NNL + SL+ LD S+N G+ P SL L
Sbjct: 498 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 547
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 238 QKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINS 297
+ IDL N L + S L LDLS+ I + GL L LI+ NPI S
Sbjct: 30 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 89
Query: 298 RIP-LFLG--TLQNLTSISVSECGLTG-PIPNFFSSLNTLTALSLDNNNL-SGTVPPSLG 352
P F G +L+NL ++ L PI L TL L++ +N + S +P
Sbjct: 90 FSPGSFSGLTSLENLVAVETKLASLESFPI----GQLITLKKLNVAHNFIHSCKLPAYFS 145
Query: 353 SLPNSMLDQLNLSHNQLS----GELQFPEE 378
+L N L ++LS+N + +LQF E
Sbjct: 146 NLTN--LVHVDLSYNYIQTITVNDLQFLRE 173
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 128 TLSPTLFGALSSLEHLALYSNPTLSGE-IPSSLAEIADLRVLSLSQNNLQG-NIPKELGR 185
+ SP F L+SLE+L S E P + ++ L+ L+++ N + +P
Sbjct: 89 SFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSN 146
Query: 186 LVNLEQLDLSYN 197
L NL +DLSYN
Sbjct: 147 LTNLVHVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 84/184 (45%), Gaps = 9/184 (4%)
Query: 165 LRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLS--GEIPDEIGGMISLTVLDLSWNG 222
L+ L+L+ N +G+I + L +L LDLS N LS G G SL LDLS+NG
Sbjct: 330 LKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387
Query: 223 LQGQVPPSLGTLQLLQKIDLGSNKLVGSIP-PAIGKLSRLVLLDLSQNCINGPIPETLSG 281
+G L+ LQ +D + L A L +L+ LD+S G
Sbjct: 388 AIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446
Query: 282 LQQLQYLIVYHNPI--NSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLD 339
L L L + N N+ +F T NLT + +S+C L F +L+ L L++
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANT-TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505
Query: 340 NNNL 343
+NNL
Sbjct: 506 HNNL 509
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 3/142 (2%)
Query: 201 GEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSR 260
++PD+I S +DLS+N L+ S LQ +DL ++ A L
Sbjct: 24 SKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81
Query: 261 LVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGL- 319
L L L+ N I P + SGL L+ L+ + S +G L L ++V+ +
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 320 TGPIPNFFSSLNTLTALSLDNN 341
+ +P +FS+L L + L N
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYN 163
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 133 LFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQL 192
+F L+SL L + N + + A +L L LS+ L+ L L+ L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502
Query: 193 DLSYNNLSGEIPDEIGGMISLTVLDLSWN------GLQGQVPPSLGTLQL 236
++S+NNL + SL+ LD S+N G+ P SL L
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 238 QKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINS 297
+ IDL N L + S L LDLS+ I + GL L LI+ NPI S
Sbjct: 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94
Query: 298 RIP-LFLG--TLQNLTSISVSECGLTG-PIPNFFSSLNTLTALSLDNNNL-SGTVPPSLG 352
P F G +L+NL ++ L PI L TL L++ +N + S +P
Sbjct: 95 FSPGSFSGLTSLENLVAVETKLASLESFPI----GQLITLKKLNVAHNFIHSCKLPAYFS 150
Query: 353 SLPNSMLDQLNLSHNQLS----GELQFPEE 378
+L N L ++LS+N + +LQF E
Sbjct: 151 NLTN--LVHVDLSYNYIQTITVNDLQFLRE 178
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 128 TLSPTLFGALSSLEHLALYSNPTLSGE-IPSSLAEIADLRVLSLSQNNLQG-NIPKELGR 185
+ SP F L+SLE+L S E P + ++ L+ L+++ N + +P
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 186 LVNLEQLDLSYN 197
L NL +DLSYN
Sbjct: 152 LTNLVHVDLSYN 163
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Query: 106 ALLKLPYLKTLSIFNCFVSSPVTLSPTL-FGALSSLEHLALYSNPTLSGEIPSSLAEIAD 164
A + L LK L + N +P+ P+ F + SL L L LS + +++
Sbjct: 131 AFVYLSKLKELWLRN----NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 165 LRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQ 224
LR L+L+ NL+ IP L L+ L++LDLS N+LS P G++ L L + + +Q
Sbjct: 187 LRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
Query: 225 GQVPPSLGTLQLLQKIDLGSNKLV 248
+ LQ L +I+L N L
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLT 268
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 6/186 (3%)
Query: 110 LPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPS-SLAEIADLRVL 168
+L+ L I + T+ F L++L L L+ N + IP+ + ++ L+ L
Sbjct: 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT--IPNGAFVYLSKLKEL 141
Query: 169 SLSQNNLQGNIPKELGRLVNLEQLDL-SYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQV 227
L N ++ R+ +L +LDL LS G+ +L L+L+ L+
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-- 199
Query: 228 PPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQY 287
P+L L L ++DL N L P + L L L + Q+ I LQ L
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259
Query: 288 LIVYHN 293
+ + HN
Sbjct: 260 INLAHN 265
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 218 LSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPE 277
+S +GL G++P L K++L N+L G P A S + L L +N I +
Sbjct: 44 ISSDGLFGRLPH-------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 278 TLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVS 315
GL QL+ L +Y N I+ +P L +LTS++++
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 183 LGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDL 242
GRL +L +L+L N L+G P+ G + L L N ++ L L+ ++L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 243 GSNKLVGSIPPAIGKLSRLVLLDLSQNCIN 272
N++ +P + L+ L L+L+ N N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 157 SSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEI-GGMISLTV 215
S+L E+ +L L L+ N LQ +L NL++L L N L +PD + + +LT
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTY 137
Query: 216 LDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAI-GKLSRLVLLDLSQNCINGP 274
L L N LQ L L ++DL +N+L S+P + KL++L L L+ N +
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 275 IPETLSGLQQLQYLIVYHNP 294
L L ++ + +NP
Sbjct: 197 PDGVFDRLTSLTHIWLLNNP 216
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 250 SIPPAI-GKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQN 308
S+P + KL+ L L L +N + L L YL +YHN + S L N
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTN 158
Query: 309 LTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQL-NLSH 366
LT + + L F L L LSL++N L S+P+ + D+L +L+H
Sbjct: 159 LTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK--------SVPDGVFDRLTSLTH 209
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 38/185 (20%)
Query: 186 LVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSN 245
L NL L+L N ++ P + + +T L+LS N L+ ++ LQ ++ +DL S
Sbjct: 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 117
Query: 246 KLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGT 305
++ P + LS L +L L N I P L+GL LQYL + + ++ PL
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPL---- 169
Query: 306 LQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLS 365
++L+ LT L D+N +S P L SLPN L +++L
Sbjct: 170 ----------------------ANLSKLTTLKADDNKISDISP--LASLPN--LIEVHLK 203
Query: 366 HNQLS 370
+NQ+S
Sbjct: 204 NNQIS 208
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Query: 166 RVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEI-GGMISLTVLDLSWNGLQ 224
++L L N + P L+NL++L L N L G +P + + LTVLDL N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 225 GQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQ 284
L L+++ + NKL +P I +L+ L L L QN + L
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 285 LQYLIVYHNPIN 296
L + ++ NP +
Sbjct: 161 LTHAYLFGNPWD 172
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Query: 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG 222
A L L N+L+ L +L QL L N L + SLT L+LS N
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 223 LQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAI-GKLSRLVLLDLSQNCINGPIPETLSG 281
LQ L L+++ L +N+L S+P + KL++L L L QN +
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 282 LQQLQYLIVYHNPINSRIP 300
L LQY+ ++ NP + P
Sbjct: 147 LTSLQYIWLHDNPWDCTCP 165
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
Query: 214 TVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAI-GKLSRLVLLDLSQNCIN 272
T LDL N L+ L L ++ LG NKL S+P + KL+ L L+LS N +
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 273 GPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNT 332
L QL+ L + N + S L L + + + L F L +
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 333 LTALSLDNNNLSGTVP 348
L + L +N T P
Sbjct: 150 LQYIWLHDNPWDCTCP 165
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 216 LDLSWNGLQGQVPPSLG-------TLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQ 268
+DL+ QG++ P +G T+Q+LQ+ + L+G P +GK + ++ L+Q
Sbjct: 10 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGE--PGVGKTA--IVEGLAQ 65
Query: 269 NCINGPIPETLSGLQQL 285
ING +PE L G + L
Sbjct: 66 RIINGEVPEGLKGRRVL 82
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 3/145 (2%)
Query: 202 EIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRL 261
+IPD + S LDLS+N L+ S + LQ +DL ++ A LS L
Sbjct: 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 262 VLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTG 321
L L+ N I SGL LQ L+ + S +G L+ L ++V+ +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 322 -PIPNFFSSLNTLTALSLDNNNLSG 345
+P +FS+L L L L +N +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 97 CKISANISDALLKLPYLKTLSIFNCFVSSPV-TLSPTLFGALSSLEHL-ALYSNPTLSGE 154
C+I A L +L TL + +P+ +L+ F LSSL+ L A+ +N
Sbjct: 62 CEIQTIEDGAYQSLSHLSTLIL----TGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117
Query: 155 IPSSLAEIADLRVLSLSQNNLQG-NIPKELGRLVNLEQLDLSYNNLSG 201
P + + L+ L+++ N +Q +P+ L NLE LDLS N +
Sbjct: 118 FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 202 EIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRL 261
+IPD + S LDLS+N L+ S + LQ +DL ++ A LS L
Sbjct: 22 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 79
Query: 262 VLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTG 321
L L+ N I SGL LQ L+ + S +G L+ L ++V+ +
Sbjct: 80 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 139
Query: 322 -PIPNFFSSLNTLTALSLDNNNL 343
+P +FS+L L L L +N +
Sbjct: 140 FKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 97 CKISANISDALLKLPYLKTLSIFNCFVSSPV-TLSPTLFGALSSLEHL-ALYSNPTLSGE 154
C+I A L +L TL + +P+ +L+ F LSSL+ L A+ +N
Sbjct: 63 CEIQTIEDGAYQSLSHLSTLIL----TGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 118
Query: 155 IPSSLAEIADLRVLSLSQNNLQG-NIPKELGRLVNLEQLDLSYNNL 199
P + + L+ L+++ N +Q +P+ L NLE LDLS N +
Sbjct: 119 FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 202 EIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRL 261
+IPD + S LDLS+N L+ S + LQ +DL ++ A LS L
Sbjct: 23 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 80
Query: 262 VLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTG 321
L L+ N I SGL LQ L+ + S +G L+ L ++V+ +
Sbjct: 81 STLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQS 140
Query: 322 -PIPNFFSSLNTLTALSLDNNNL 343
+P +FS+L L L L +N +
Sbjct: 141 FKLPEYFSNLTNLEHLDLSSNKI 163
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 97 CKISANISDALLKLPYLKTLSIFNCFVSSPV-TLSPTLFGALSSLEHL-ALYSNPTLSGE 154
C+I A L +L TL + +P+ +L+ F LSSL+ L AL +N
Sbjct: 64 CEIQTIEDGAYQSLSHLSTLIL----TGNPIQSLALGAFSGLSSLQKLVALETNLASLEN 119
Query: 155 IPSSLAEIADLRVLSLSQNNLQG-NIPKELGRLVNLEQLDLSYNNL 199
P + + L+ L+++ N +Q +P+ L NLE LDLS N +
Sbjct: 120 FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 108 LKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGE-IPSSLAEIAD-- 164
LK LK L+ + +T PT AL + + + N +SGE + +AD
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAP 302
Query: 165 ----LRVLSLSQNNLQGNIPKE--LGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDL 218
++++ + NNL+ P E L + L L+ YN L G++P G I L L+L
Sbjct: 303 VGEKIQIIYIGYNNLK-TFPVETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLNL 360
Query: 219 SWNGLQGQVPPSL-GTLQLLQKIDLGSNKL 247
++N + ++P + G + ++ + NKL
Sbjct: 361 AYNQIT-EIPANFCGFTEQVENLSFAHNKL 389
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 97/219 (44%), Gaps = 9/219 (4%)
Query: 153 GEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMIS 212
E+P+S+ + R L+L +N++Q L +LE L LS N + G+ S
Sbjct: 27 AEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 213 LTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPP-AIGKLSRLVLLDLSQNCI 271
L L+L N L + L L+++ L +N + SIP A ++ L LDL +
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLRRLDLGELKR 143
Query: 272 NGPIPET-LSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSL 330
I E GL L+YL + + IP L L L + +S L P F L
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKD-IP-NLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 331 NTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQL 369
+L L L + ++ + L + L++LNLSHN L
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKS--LEELNLSHNNL 238
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 124 SSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKEL 183
S L ++F + LE L L N ++ ++ + L L+LSQN L +
Sbjct: 285 SKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343
Query: 184 GRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
L LE LDLSYN++ G+ +L L L N L+ L LQKI L
Sbjct: 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403
Query: 244 SNKLVGSIPPAIGKLSR 260
+N S P I LSR
Sbjct: 404 TNPWDCSC-PRIDYLSR 419
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Query: 240 IDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPE-TLSGLQQLQYLIVYHNPINSR 298
+DL N + + +L L L + Q I T GL L L + +N
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 299 IPLFLGTLQNLTSISVSECGLTGPI--PNFFSSLNTLTALSLDNNNLSGTVPPSL 351
L NL +++++C L G + NFF L +L L L +NN+ P S
Sbjct: 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 19/188 (10%)
Query: 131 PTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGR----- 185
P + LE L L NP + +P+S+A + LR LS+ +P+ L
Sbjct: 120 PDTXQQFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 186 ----LVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKID 241
LVNL+ L L + + +P I + +L L + N + P++ L L+++D
Sbjct: 178 EHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELD 235
Query: 242 LGSNKLVGSIPPAIG---KLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSR 298
L + + PP G L RL+L D S N + +P + L QL+ L + SR
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCS-NLLT--LPLDIHRLTQLEKLDLRGCVNLSR 292
Query: 299 IPLFLGTL 306
+P + L
Sbjct: 293 LPSLIAQL 300
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 109/249 (43%), Gaps = 16/249 (6%)
Query: 153 GEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMIS 212
E+P+S+ + R L+L +N++Q L +LE L LS N + G+ S
Sbjct: 27 AEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 213 LTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPP-AIGKLSRLVLLDLSQNCI 271
L L+L N L + L L+++ L +N + SIP A ++ L LDL +
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLRRLDLGELKR 143
Query: 272 NGPIPET-LSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSL 330
I E GL L+YL + + IP L L L + +S L P F L
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKD-IP-NLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 331 NTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEF---IERLGERL 387
+L L L + ++ + L + L++LNLSHN L + P + + RL ER+
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKS--LEELNLSHNNL---MSLPHDLFTPLHRL-ERV 255
Query: 388 DVRGNDKLC 396
+ N C
Sbjct: 256 HLNHNPWHC 264
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 167 VLSLSQNNLQGNIPKE-LGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQG 225
L +NL NI ++ L RL L++ + L+ + + M +L+ L+L N
Sbjct: 102 TLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN--IE 159
Query: 226 QVPPSL-GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQ 284
++P L L+ L+ I+ GSNKL GK+ +L L+L+ N + L
Sbjct: 160 EMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTS 219
Query: 285 LQYLIVYHNPINSRIP 300
LQ + ++ NP + P
Sbjct: 220 LQKIWLHTNPWDCSCP 235
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 155 IPSSLAEIADLRVLSLSQNNLQGNIPKELG--RLVNLEQLDLSYNNLSGEIPDEIGGMIS 212
+P SL L L LS NNL + E RL NL L LS+N+L+ + + +
Sbjct: 33 VPQSLPSYTAL--LDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 213 LTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCI 271
L LDLS N L LQ L+ + L +N +V A +++L L LSQN I
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Query: 155 IPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLT 214
IPS L E ++ L LS N + +L R VNL+ L L+ N ++ D + SL
Sbjct: 46 IPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 215 VLDLSWNGLQGQVPPSLGTLQLLQKIDLGSN--KLVGSIPPAIGKLSRLVLLDL-SQNCI 271
LDLS+N L L L ++L N K +G L++L +L + + +
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTF 162
Query: 272 NGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSI 312
+ +GL L+ L + + + S P L ++QN++ +
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
Query: 157 SSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVL 216
S L +L+ L L+ N + L +LE LDLSYN LS + SLT L
Sbjct: 70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129
Query: 217 DLSWNGLQGQVPPSL-GTLQLLQKIDLGSNKLVGSIPPA-IGKLSRLVLLDLSQNCINGP 274
+L N + SL L LQ + +G+ I L+ L L++ + +
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189
Query: 275 IPETLSGLQQLQYLIVY 291
P++L +Q + +LI++
Sbjct: 190 EPKSLKSIQNVSHLILH 206
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Query: 155 IPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLT 214
IPS L E ++ L LS N + +L R VNL+ L L+ N ++ D + SL
Sbjct: 20 IPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 215 VLDLSWNGLQGQVPPSLGTLQLLQKIDLGSN--KLVGSIPPAIGKLSRLVLLDL-SQNCI 271
LDLS+N L L L ++L N K +G L++L +L + + +
Sbjct: 78 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTF 136
Query: 272 NGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSI 312
+ +GL L+ L + + + S P L ++QN++ +
Sbjct: 137 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 177
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
Query: 157 SSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVL 216
S L +L+ L L+ N + L +LE LDLSYN LS + SLT L
Sbjct: 44 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 103
Query: 217 DLSWNGLQGQVPPSL-GTLQLLQKIDLGSNKLVGSIPPA-IGKLSRLVLLDLSQNCINGP 274
+L N + SL L LQ + +G+ I L+ L L++ + +
Sbjct: 104 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 163
Query: 275 IPETLSGLQQLQYLIVY 291
P++L +Q + +LI++
Sbjct: 164 EPKSLKSIQNVSHLILH 180
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 175 LQGN----IPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPS 230
L GN +PKEL +L +DLS N +S M L L LS+N L+ P +
Sbjct: 38 LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97
Query: 231 LGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQN 269
L+ L+ + L N + A LS L L + N
Sbjct: 98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 227 VPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQ 286
VP L + L IDL +N++ + +++L+ L LS N + P T GL+ L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 287 YLIVYHNPINSRIPLFLGTLQNLTSIS 313
L ++ N I S +P G +L+++S
Sbjct: 106 LLSLHGNDI-SVVP--EGAFNDLSALS 129
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 179 IPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQ 238
+PK + R V LD N +P E+ LT++DLS N + S + L
Sbjct: 25 LPKGIPRDVTELYLD---GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 239 KIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPE-TLSGLQQLQYLIVYHNPI 295
+ L N+L P L L LL L N I+ +PE + L L +L + NP+
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 215 VLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGP 274
++D GL ++P +L + + +I L N + P A +L +DLS N I+
Sbjct: 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 275 IPETLSGLQQLQYLIVYHNPI 295
P+ GL+ L L++Y N I
Sbjct: 72 APDAFQGLRSLNSLVLYGNKI 92
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 215 VLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGP 274
++D GL ++P +L + + +I L N + P A +L +DLS N I+
Sbjct: 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 275 IPETLSGLQQLQYLIVYHNPI 295
P+ GL+ L L++Y N I
Sbjct: 72 APDAFQGLRSLNSLVLYGNKI 92
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Query: 240 IDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPE-TLSGLQQLQYLIVYHNPINSR 298
+DL N + + +L L L + Q I T GL L L + +N
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 299 IPLFLGTLQNLTSISVSECGLTGPI--PNFFSSLNTLTALSLDNNNLSGTVPPSL 351
L NL +++++C L G + NFF L +L L L +NN+ P S
Sbjct: 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 232 GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVY 291
GTL +L +DL N+L S+P L L +LD+S N + L GL +LQ L +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 292 HNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348
N + + P L L +S++ LT + L L L L N+L T+P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 184 GRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
G L L LDLS+N L +P + +LTVLD+S+N L +L L LQ++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 SNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL 303
N+L P + +L L L+ N + L+GL+ L L++ N + + F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 304 GT 305
G+
Sbjct: 193 GS 194
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG 222
D +L LS+N L L L QL+L L+ D G + L LDLS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQ 88
Query: 223 LQGQVPPSLG-TLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSG 281
LQ P LG TL L +D+ N+L A+ L L L L N + P L+
Sbjct: 89 LQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 282 LQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSS 329
+L+ L + +N + L L+NL ++ + E L FF S
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 232 GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVY 291
GTL +L +DL N+L S+P L L +LD+S N + L GL +LQ L +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 292 HNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348
N + + P L L +S++ LT + L L L L N+L T+P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY-TIP 188
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 184 GRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
G L L LDLS+N L +P + +LTVLD+S+N L +L L LQ++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 SNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL 303
N+L P + +L L L+ N + L+GL+ L L++ N + + F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 304 GT 305
G+
Sbjct: 193 GS 194
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG 222
D +L LS+N L L L QL+L L+ D G + L LDLS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQ 88
Query: 223 LQGQVPPSLG-TLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSG 281
LQ P LG TL L +D+ N+L A+ L L L L N + P L+
Sbjct: 89 LQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 282 LQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSS 329
+L+ L + +N + L L+NL ++ + E L FF S
Sbjct: 147 TPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 232 GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVY 291
GTL +L +DL N+L S+P L L +LD+S N + L GL +LQ L +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 292 HNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348
N + + P L L +S++ LT + L L L L N+L T+P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 184 GRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
G L L LDLS+N L +P + +LTVLD+S+N L +L L LQ++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 SNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL 303
N+L P + +L L L+ N + L+GL+ L L++ N + + F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 304 GT 305
G+
Sbjct: 193 GS 194
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG 222
D +L LS+N L L L QL+L L+ D G + L LDLS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQ 88
Query: 223 LQGQVPPSLG-TLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSG 281
LQ P LG TL L +D+ N+L A+ L L L L N + P L+
Sbjct: 89 LQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 282 LQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSS 329
+L+ L + +N + L L+NL ++ + E L FF S
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 184 GRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
G L L LDLS+N L +P + +LTVLD+S+N L +L L LQ++ L
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 244 SNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL 303
N+L P + +L L L+ N + L+GL+ L L++ N + + F
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
Query: 304 GT 305
G+
Sbjct: 194 GS 195
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 232 GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVY 291
GTL +L +DL N+L S+P L L +LD+S N + L GL +LQ L +
Sbjct: 75 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 292 HNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348
N + + P L L +S++ LT + L L L L N+L T+P
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 189
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG 222
D +L LS+N L L L QL+L L+ D G + L LDLS N
Sbjct: 32 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQ 89
Query: 223 LQGQVPPSLG-TLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSG 281
LQ P LG TL L +D+ N+L A+ L L L L N + P L+
Sbjct: 90 LQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 147
Query: 282 LQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSS 329
+L+ L + +N + L L+NL ++ + E L FF S
Sbjct: 148 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 195
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 232 GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVY 291
GTL +L +DL N+L S+P L L +LD+S N + L GL +LQ L +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 292 HNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348
N + + P L L +S++ LT + L L L L N+L T+P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 184 GRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
G L L LDLS+N L +P + +LTVLD+S+N L +L L LQ++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 SNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL 303
N+L P + +L L L+ N + L+GL+ L L++ N + + F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 304 GT 305
G+
Sbjct: 193 GS 194
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG 222
D +L LS+N L L L QL+L L+ D G + L LDLS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQ 88
Query: 223 LQGQVPPSLG-TLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSG 281
LQ P LG TL L +D+ N+L A+ L L L L N + P L+
Sbjct: 89 LQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 282 LQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSS 329
+L+ L + +N + L L+NL ++ + E L FF S
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 184 GRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
G L L LDLS+N L +P + +LTVLD+S+N L +L L LQ++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 SNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL 303
N+L P + +L L L+ N + L+GL+ L L++ N + + F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 304 GT 305
G+
Sbjct: 193 GS 194
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 232 GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVY 291
GTL +L +DL N+L S+P L L +LD+S N + L GL +LQ L +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 292 HNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348
N + + P L L +S++ LT + L L L L N+L T+P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIP 188
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG 222
D +L LS+N L L L QL+L L+ D G + L LDLS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQ 88
Query: 223 LQGQVPPSLG-TLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSG 281
LQ P LG TL L +D+ N+L A+ L L L L N + P L+
Sbjct: 89 LQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 282 LQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSS 329
+L+ L + +N + L L+NL ++ + E L FF S
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 184 GRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
G L L LDLS+N L +P + +LTVLD+S+N L +L L LQ++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 SNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL 303
N+L P + +L L L+ N + L+GL+ L L++ N + + F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 304 GT 305
G+
Sbjct: 193 GS 194
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 232 GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVY 291
GTL +L +DL N+L S+P L L +LD+S N + L GL +LQ L +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 292 HNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348
N + + P L L +S++ LT + L L L L N+L T+P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG 222
D +L LS+N L L L QL+L L+ D G + L LDLS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQ 88
Query: 223 LQGQVPPSLG-TLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSG 281
LQ P LG TL L +D+ N+L A+ L L L L N + P L+
Sbjct: 89 LQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 282 LQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSS 329
+L+ L + +N + L L+NL ++ + E L FF S
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 184 GRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
G L L LDLS+N L +P + +LTVLD+S+N L +L L LQ++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 SNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL 303
N+L P + +L L L+ N + L+GL+ L L++ N + + F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 304 GT 305
G+
Sbjct: 193 GS 194
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 232 GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVY 291
GTL +L +DL N+L S+P L L +LD+S N + L GL +LQ L +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 292 HNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348
N + + P L L +S++ LT + L L L L N+L T+P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIP 188
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG 222
D +L LS+N L L L QL+L L+ D G + L LDLS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQ 88
Query: 223 LQGQVPPSLG-TLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSG 281
LQ P LG TL L +D+ N+L A+ L L L L N + P L+
Sbjct: 89 LQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 282 LQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSS 329
+L+ L + +N + L L+NL ++ + E L FF S
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 184 GRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
G L L LDLS+N L +P + +LTVLD+S+N L +L L LQ++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 SNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL 303
N+L P + +L L L+ N + L+GL+ L L++ N + + F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 304 GT 305
G+
Sbjct: 193 GS 194
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 232 GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVY 291
GTL +L +DL N+L S+P L L +LD+S N + L GL +LQ L +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 292 HNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348
N + + P L L +S++ LT + L L L L N+L T+P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIP 188
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG 222
D +L LS+N L L L QL+L L+ D G + L LDLS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQ 88
Query: 223 LQGQVPPSLG-TLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSG 281
LQ P LG TL L +D+ N+L A+ L L L L N + P L+
Sbjct: 89 LQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 282 LQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSS 329
+L+ L + +N + L L+NL ++ + E L FF S
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 184 GRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243
G L L LDLS+N L +P + +LTVLD+S+N L +L L LQ++ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 SNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL 303
N+L P + +L L L+ N + L+GL+ L L++ N + + F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 304 GT 305
G+
Sbjct: 193 GS 194
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 232 GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVY 291
GTL +L +DL N+L S+P L L +LD+S N + L GL +LQ L +
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 292 HNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348
N + + P L L +S++ LT + L L L L N+L T+P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIP 188
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG 222
D +L LS+N L L L QL+L L+ D G + L LDLS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQ 88
Query: 223 LQGQVPPSLG-TLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSG 281
LQ P LG TL L +D+ N+L A+ L L L L N + P L+
Sbjct: 89 LQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 282 LQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSS 329
+L+ L + +N + L L+NL ++ + E L FF S
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 126 PVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGR 185
P+ L + +HLAL +N E SSL+ + +LR+LSL + NL I
Sbjct: 37 PIEKMDATLSTLKACKHLALSTNNI---EKISSLSGMENLRILSLGR-NLIKKIENLDAV 92
Query: 186 LVNLEQLDLSYN---NLSGEIPDEIGGMISLTVLDLSWNGLQ--GQVPPSLGTLQLLQKI 240
LE+L +SYN +LSG I +++L VL +S N + G++ L L L+ +
Sbjct: 93 ADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDL 146
Query: 241 DLGSN 245
L N
Sbjct: 147 LLAGN 151
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 126 PVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGR 185
P+ L + +HLAL +N E SSL+ + +LR+LSL + NL I
Sbjct: 36 PIEKMDATLSTLKACKHLALSTNNI---EKISSLSGMENLRILSLGR-NLIKKIENLDAV 91
Query: 186 LVNLEQLDLSYN---NLSGEIPDEIGGMISLTVLDLSWNGLQ--GQVPPSLGTLQLLQKI 240
LE+L +SYN +LSG I +++L VL +S N + G++ L L L+ +
Sbjct: 92 ADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDL 145
Query: 241 DLGSN 245
L N
Sbjct: 146 LLAGN 150
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 234 LQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHN 293
L+++Q DLG + I P LLDL N I+ + GLQ L L++ +N
Sbjct: 35 LRVVQCSDLGLKAVPKEISPDT------TLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88
Query: 294 PINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSL 330
I+ L+ L + +S+ L PN SSL
Sbjct: 89 KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSL 125
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 83/203 (40%), Gaps = 41/203 (20%)
Query: 203 IPDEIGGMISLTVLDLSWN-----------GLQGQVP-------------PSLGTLQLLQ 238
+P EI T+LDL N GLQ + L+ LQ
Sbjct: 48 VPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 239 KIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPI-NS 297
K+ + N LV IPP + S LV L + N I SGL+ + + + NP+ NS
Sbjct: 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162
Query: 298 RI-PLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPN 356
P L+ L + +SE LTG IP TL L LD+N + L L
Sbjct: 163 GFEPGAFDGLK-LNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAIELEDL--LRY 216
Query: 357 SMLDQLNLSHNQL----SGELQF 375
S L +L L HNQ+ +G L F
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSF 239
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 129 LSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVN 188
P F L L +L + S L+G IP L E L L L N +Q ++L R
Sbjct: 164 FEPGAFDGLK-LNYLRI-SEAKLTG-IPKDLPET--LNELHLDHNKIQAIELEDLLRYSK 218
Query: 189 LEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLV 248
L +L L +N + + + +L L L N L +VP L L+LLQ + L +N +
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 65/158 (41%), Gaps = 11/158 (6%)
Query: 127 VTLSPTLFGALSSLEHLALYSNP--TLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELG 184
TLS F L+ L L L N TLS + L E+ L L+ N L ++P LG
Sbjct: 48 ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG---TLGLANNQL-ASLP--LG 101
Query: 185 RLVNLEQLDLSY---NNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKID 241
+L QLD Y N L + L L L+ N LQ + L LQ +
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 242 LGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETL 279
L +N+L A +L +L + L N + ETL
Sbjct: 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETL 199
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 237 LQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNP 294
LQ++ SNKL KL++L LDL+ N + L+ L ++ +Y+NP
Sbjct: 59 LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 164 DLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGL 223
D + L L+ N + P LVNL+QL + N L+ + LT LDL+ N L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Query: 224 QGQVPPSLGTLQLLQKIDLGSN 245
+ + L+ L I L +N
Sbjct: 94 KSIPRGAFDNLKSLTHIYLYNN 115
>pdb|3UUX|B Chain B, Crystal Structure Of Yeast Fis1 In Complex With Mdv1
Fragment Containing N-Terminal Extension And Coiled Coil
Domains
pdb|3UUX|D Chain D, Crystal Structure Of Yeast Fis1 In Complex With Mdv1
Fragment Containing N-Terminal Extension And Coiled Coil
Domains
Length = 242
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 102 NISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAE 161
N D+ L P ++T +I + + SP L ++SLE L + N TLS E
Sbjct: 129 NFQDSFLIPPGVETAAISSSY--SPSALKSFSQTLVNSLEFLNIQKNSTLS--------E 178
Query: 162 IADLRVLSLSQNNLQGNIPKELGRLVNLEQ 191
I D+ V NL+ K LG++ N+EQ
Sbjct: 179 IRDIEV---EVENLRQKKEKLLGKIANIEQ 205
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 109 KLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPS-SLAEIADLRV 167
K+P KTL + + ++F L+ + + L +NP S I + + + L
Sbjct: 118 KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175
Query: 168 LSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQV 227
+ ++ N+ IP+ G +L +L L N ++ + G+ +L L LS+N +
Sbjct: 176 IRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232
Query: 228 PPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCING 273
SL L+++ L +NKLV +P + + ++ L N I+
Sbjct: 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 34/184 (18%)
Query: 214 TVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCING 273
+LDL N + L+ L + L +NK+ P A L +L L LS+N +
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 274 PIPETLSGLQQLQYLIVYHNPI-----------NSRIPLFLGT---------------LQ 307
+PE + + LQ L V+ N I N I + LGT ++
Sbjct: 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 308 NLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHN 367
L+ I +++ +T IP +LT L LD N ++ SL L N L +L LS N
Sbjct: 172 KLSYIRIADTNITT-IPQGLPP--SLTELHLDGNKITKVDAASLKGLNN--LAKLGLSFN 226
Query: 368 QLSG 371
+S
Sbjct: 227 SISA 230
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 109 KLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPS-SLAEIADLRV 167
K+P KTL + + ++F L+ + + L +NP S I + + + L
Sbjct: 118 KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175
Query: 168 LSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQV 227
+ ++ N+ IP+ G +L +L L N ++ + G+ +L L LS+N +
Sbjct: 176 IRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232
Query: 228 PPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCING 273
SL L+++ L +NKLV +P + + ++ L N I+
Sbjct: 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 34/184 (18%)
Query: 214 TVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCING 273
+LDL N + L+ L + L +NK+ P A L +L L LS+N +
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 274 PIPETLSGLQQLQYLIVYHNPI-----------NSRIPLFLGT---------------LQ 307
+PE + + LQ L V+ N I N I + LGT ++
Sbjct: 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 308 NLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHN 367
L+ I +++ +T IP +LT L LD N ++ SL L N L +L LS N
Sbjct: 172 KLSYIRIADTNITT-IPQGLPP--SLTELHLDGNKITKVDAASLKGLNN--LAKLGLSFN 226
Query: 368 QLSG 371
+S
Sbjct: 227 SISA 230
>pdb|2ZYK|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|B Chain B, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|C Chain C, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|D Chain D, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYM|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Alpha-Cyclodextrin
pdb|2ZYN|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Beta-Cyclodextrin
pdb|2ZYO|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Maltotetraose
Length = 397
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 89 GPDIIT-PTCKISANISDALLKLPYLKTLSIFNCF---VSSPVTLSPTLFGALSSLEHLA 144
G D++T P ++ ++ LL+ P S+ N F +T L+G ++E +A
Sbjct: 74 GADLVTWPHDRLGEAVTKGLLQ-PIQVDNSVKNQFDDVAMKALTYGGKLYGLPKAIESVA 132
Query: 145 LYSNPTLSGEIPSSLAEI 162
L N L G++P++ E+
Sbjct: 133 LIYNKKLMGQVPATYDEL 150
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 50/232 (21%)
Query: 111 PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVL-S 169
P L TLS+ N + + F A +SL++L L SN L + DL ++ S
Sbjct: 147 PKLTTLSMSNNNLER---IEDDTFQATTSLQNLQLSSN---------RLTHV-DLSLIPS 193
Query: 170 LSQNNLQGNIPKELGRLVNLEQLDLSYNNLS---GEIPDEIGGMI--------------- 211
L N+ N+ L + +E+LD S+N+++ G + E+ +
Sbjct: 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 253
Query: 212 -SLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVG------SIPPAIGKLSRLVLL 264
L +DLS+N L+ + +Q L+++ + +N+LV IP L +L
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVL 306
Query: 265 DLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSE 316
DLS N + + +L+ L + HN I + L L T L ++++S
Sbjct: 307 DLSHNHL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSH 354
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 40/227 (17%)
Query: 111 PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVL-S 169
P L TLS+ N ++ + F A +SL++L L SN L + DL ++ S
Sbjct: 141 PKLTTLSMSN---NNLERIEDDTFQATTSLQNLQLSSN---------RLTHV-DLSLIPS 187
Query: 170 LSQNNLQGNIPKELGRLVNLEQLDLSYNNLS---GEIPDEIGGMI--------------- 211
L N+ N+ L + +E+LD S+N+++ G + E+ +
Sbjct: 188 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 247
Query: 212 -SLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGK-LSRLVLLDLSQN 269
L +DLS+N L+ + +Q L+++ + +N+LV G+ + L +LDLS N
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN 305
Query: 270 CINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSE 316
+ + +L+ L + HN I + L L T L ++++S
Sbjct: 306 HL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSH 348
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 159 LAEIADLRVLSLSQ---NNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTV 215
L A+L+VL L N ++G+ LG +LE LDLS N+LS G + SL
Sbjct: 72 LRACANLQVLILKSSRINTIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKY 128
Query: 216 LDLSWNGLQ----GQVPPSLGTLQLLQ 238
L+L N Q + P+L LQ L+
Sbjct: 129 LNLMGNPYQTLGVTSLFPNLTNLQTLR 155
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 92 IITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTL 151
+I + +I+ DA L L+ L + + +SS LS + FG LSSL++L L NP
Sbjct: 81 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS---LSSSWFGPLSSLKYLNLMGNPYQ 137
Query: 152 SGEIPSSLAEIADLRVLSLSQNNLQGNIPK-ELGRLVNLEQLD---LSYNNLSGEIPDEI 207
+ + S + +L+ L + I + + L +L +L+ LS N + I
Sbjct: 138 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 197
Query: 208 GGMISLTV 215
+ LT+
Sbjct: 198 RDIHHLTL 205
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 36/126 (28%)
Query: 239 KIDLGSNKLVGSIPPAI-GKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINS 297
+++L SNKL S+P + KL++L L LSQN I L +L L ++ N + S
Sbjct: 32 RLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 298 RIPLFLGTLQNLTSISVSECGLTGPIPN-FFSSLNTLTALSLDNNNLSGTVPPSLGSLPN 356
+PN F L L L+LD N L S+P+
Sbjct: 91 -------------------------LPNGVFDKLTQLKELALDTNQLK--------SVPD 117
Query: 357 SMLDQL 362
+ D+L
Sbjct: 118 GIFDRL 123
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 159 LAEIADLRVLSLSQ---NNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTV 215
L A+L+VL L N ++G+ LG +LE LDLS N+LS G + SL
Sbjct: 46 LRACANLQVLILKSSRINTIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKY 102
Query: 216 LDLSWNGLQ----GQVPPSLGTLQLLQ 238
L+L N Q + P+L LQ L+
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLR 129
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 92 IITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTL 151
+I + +I+ DA L L+ L + + +SS LS + FG LSSL++L L NP
Sbjct: 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS---LSSSWFGPLSSLKYLNLMGNPYQ 111
Query: 152 SGEIPSSLAEIADLRVLSLSQNNLQGNIPK-ELGRLVNLEQLD---LSYNNLSGEIPDEI 207
+ + S + +L+ L + I + + L +L +L+ LS N + I
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171
Query: 208 GGMISLTV 215
+ LT+
Sbjct: 172 RDIHHLTL 179
>pdb|1KWG|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase
pdb|1KWK|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase In Complex With Galactose
Length = 645
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 142 HLALYSNPTLSGEIPSSLAEIADLRVLSLSQN 173
+LA + +P L+G + S+LA A L+VLSL +
Sbjct: 566 YLAAWPSPELAGRLLSALAAEAGLKVLSLPEG 597
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,969,493
Number of Sequences: 62578
Number of extensions: 442788
Number of successful extensions: 1425
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 928
Number of HSP's gapped (non-prelim): 272
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)