Query 037919
Match_columns 397
No_of_seqs 418 out of 4472
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.7E-43 2.1E-47 370.8 28.4 337 33-393 27-367 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-35 2.9E-40 316.2 20.8 290 97-393 150-439 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-31 2.3E-36 250.7 1.0 305 79-397 123-454 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.8E-29 3.9E-34 235.9 5.1 298 82-393 79-403 (873)
5 KOG0444 Cytoskeletal regulator 99.9 2E-27 4.3E-32 223.9 -3.2 279 103-395 95-375 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 3.5E-27 7.6E-32 222.3 -4.8 280 101-393 45-327 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.2E-25 2.7E-30 201.9 -9.0 251 102-369 59-309 (565)
8 PLN03210 Resistant to P. syrin 99.9 5.3E-21 1.1E-25 205.5 23.1 272 103-393 626-904 (1153)
9 KOG4237 Extracellular matrix p 99.9 6.1E-24 1.3E-28 190.7 -2.9 278 113-397 69-361 (498)
10 KOG0472 Leucine-rich repeat pr 99.9 1.9E-24 4.1E-29 194.3 -8.8 264 111-394 45-309 (565)
11 PRK15370 E3 ubiquitin-protein 99.9 3.3E-20 7.2E-25 187.8 20.6 321 29-395 57-428 (754)
12 PLN03210 Resistant to P. syrin 99.9 4.3E-20 9.2E-25 198.5 22.4 275 103-395 580-882 (1153)
13 PRK15387 E3 ubiquitin-protein 99.8 4.9E-20 1.1E-24 185.7 18.2 164 187-377 302-465 (788)
14 cd00116 LRR_RI Leucine-rich re 99.8 5.1E-22 1.1E-26 185.7 -0.2 245 105-372 17-293 (319)
15 PRK15370 E3 ubiquitin-protein 99.8 2.2E-19 4.8E-24 181.9 14.7 246 82-370 179-428 (754)
16 PRK15387 E3 ubiquitin-protein 99.8 3.9E-19 8.4E-24 179.2 15.7 255 85-396 205-459 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 2.8E-21 6.1E-26 180.6 0.1 260 81-368 23-318 (319)
18 KOG0618 Serine/threonine phosp 99.8 2E-21 4.4E-26 191.0 -2.8 128 260-394 360-488 (1081)
19 KOG0618 Serine/threonine phosp 99.8 1.1E-20 2.3E-25 186.0 -3.3 243 112-368 242-487 (1081)
20 KOG4237 Extracellular matrix p 99.8 1.3E-20 2.9E-25 169.3 -4.2 302 56-371 36-360 (498)
21 KOG0617 Ras suppressor protein 99.7 4.6E-19 1E-23 142.4 -4.9 157 159-320 29-186 (264)
22 KOG0617 Ras suppressor protein 99.7 6E-19 1.3E-23 141.8 -5.1 183 183-371 29-213 (264)
23 PLN03150 hypothetical protein; 99.6 1E-14 2.2E-19 147.2 15.1 156 29-198 366-526 (623)
24 PLN03150 hypothetical protein; 99.4 1.1E-12 2.3E-17 132.6 8.3 112 284-397 419-530 (623)
25 COG4886 Leucine-rich repeat (L 99.3 2.9E-12 6.2E-17 123.4 6.8 200 142-351 97-297 (394)
26 KOG1909 Ran GTPase-activating 99.3 5.2E-13 1.1E-17 119.2 0.7 233 134-370 26-311 (382)
27 KOG1909 Ran GTPase-activating 99.3 3.3E-13 7.2E-18 120.4 -0.5 242 101-344 20-311 (382)
28 COG4886 Leucine-rich repeat (L 99.3 3.5E-12 7.5E-17 122.9 5.7 200 115-327 97-297 (394)
29 KOG0532 Leucine-rich repeat (L 99.2 3.4E-13 7.3E-18 127.3 -2.9 158 155-320 90-247 (722)
30 KOG0532 Leucine-rich repeat (L 99.2 2.4E-13 5.3E-18 128.2 -4.8 194 163-368 75-271 (722)
31 KOG3207 Beta-tubulin folding c 99.2 4E-12 8.6E-17 116.7 0.1 208 135-344 118-339 (505)
32 KOG3207 Beta-tubulin folding c 99.2 3.6E-12 7.7E-17 117.0 -0.4 211 160-373 118-342 (505)
33 KOG4658 Apoptotic ATPase [Sign 99.1 7.3E-11 1.6E-15 122.2 4.3 109 109-222 543-653 (889)
34 KOG1259 Nischarin, modulator o 99.1 3.2E-11 7E-16 105.8 0.9 137 230-374 279-416 (490)
35 PF14580 LRR_9: Leucine-rich r 99.0 1.7E-10 3.7E-15 96.5 3.6 80 211-295 19-100 (175)
36 PF14580 LRR_9: Leucine-rich r 99.0 1.3E-10 2.9E-15 97.2 2.8 84 210-296 41-126 (175)
37 KOG1259 Nischarin, modulator o 98.9 1.5E-10 3.2E-15 101.7 0.5 200 183-394 210-411 (490)
38 PF13855 LRR_8: Leucine rich r 98.8 2.2E-09 4.7E-14 73.9 3.1 60 308-369 2-61 (61)
39 KOG0531 Protein phosphatase 1, 98.8 2.7E-10 5.8E-15 110.2 -2.3 219 135-370 69-290 (414)
40 PF13855 LRR_8: Leucine rich r 98.8 2.6E-09 5.7E-14 73.5 3.0 61 283-343 1-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.8 3.6E-09 7.8E-14 109.8 5.3 154 108-267 520-676 (889)
42 KOG0531 Protein phosphatase 1, 98.8 3.1E-10 6.8E-15 109.7 -2.9 249 108-376 69-324 (414)
43 KOG1859 Leucine-rich repeat pr 98.6 8.8E-10 1.9E-14 107.3 -5.8 127 260-396 165-293 (1096)
44 COG5238 RNA1 Ran GTPase-activa 98.6 2.3E-08 5.1E-13 86.9 1.8 244 108-370 27-316 (388)
45 KOG1859 Leucine-rich repeat pr 98.5 4.1E-10 9E-15 109.5 -10.6 125 213-344 166-292 (1096)
46 KOG2982 Uncharacterized conser 98.5 4E-08 8.6E-13 86.6 2.1 121 101-223 35-158 (418)
47 COG5238 RNA1 Ran GTPase-activa 98.5 6.4E-08 1.4E-12 84.2 2.4 168 207-376 88-291 (388)
48 KOG2120 SCF ubiquitin ligase, 98.4 4.1E-09 8.8E-14 92.7 -5.8 177 163-341 185-373 (419)
49 KOG2120 SCF ubiquitin ligase, 98.4 5.7E-09 1.2E-13 91.8 -6.2 177 187-367 185-373 (419)
50 KOG2982 Uncharacterized conser 98.2 2.3E-07 5E-12 81.9 -0.2 227 139-370 46-290 (418)
51 KOG4579 Leucine-rich repeat (L 98.2 9.4E-08 2E-12 74.8 -2.6 85 161-248 51-136 (177)
52 KOG4579 Leucine-rich repeat (L 98.2 5.7E-08 1.2E-12 76.0 -4.7 136 237-378 29-167 (177)
53 PF08263 LRRNT_2: Leucine rich 98.1 5.8E-06 1.3E-10 52.1 4.1 36 34-72 2-43 (43)
54 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.6E-10 50.8 3.7 36 308-344 2-37 (44)
55 PRK15386 type III secretion pr 97.9 5.1E-05 1.1E-09 71.6 9.3 137 158-317 47-187 (426)
56 KOG3665 ZYG-1-like serine/thre 97.8 5.7E-06 1.2E-10 84.2 1.6 108 138-247 122-232 (699)
57 KOG4341 F-box protein containi 97.8 6.6E-07 1.4E-11 82.5 -4.8 258 106-368 159-437 (483)
58 PF12799 LRR_4: Leucine Rich r 97.8 1.5E-05 3.4E-10 50.3 2.9 38 331-371 1-38 (44)
59 PRK15386 type III secretion pr 97.8 0.0001 2.2E-09 69.7 9.5 138 106-269 47-187 (426)
60 KOG3665 ZYG-1-like serine/thre 97.8 1.6E-05 3.5E-10 81.0 3.6 136 111-249 122-264 (699)
61 KOG1644 U2-associated snRNP A' 97.7 7.1E-05 1.5E-09 62.8 5.1 39 185-223 62-100 (233)
62 KOG1644 U2-associated snRNP A' 97.5 0.00014 3.1E-09 61.1 5.2 65 207-271 60-125 (233)
63 KOG2739 Leucine-rich acidic nu 97.4 6.7E-05 1.4E-09 65.5 1.4 113 153-267 33-151 (260)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00039 8.4E-09 55.4 5.7 13 107-119 8-20 (129)
65 PF13306 LRR_5: Leucine rich r 97.2 0.0009 1.9E-08 53.2 6.4 9 282-290 80-88 (129)
66 KOG4341 F-box protein containi 97.2 1.4E-05 3E-10 74.0 -5.2 257 111-370 138-414 (483)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00024 5.2E-09 62.1 1.7 93 203-297 35-130 (260)
68 KOG1947 Leucine rich repeat pr 96.9 9.9E-05 2.1E-09 72.9 -2.4 16 279-294 358-373 (482)
69 KOG1947 Leucine rich repeat pr 96.8 0.00029 6.3E-09 69.5 0.1 225 108-343 185-439 (482)
70 KOG2123 Uncharacterized conser 96.8 7E-05 1.5E-09 65.9 -3.9 98 112-217 20-123 (388)
71 KOG2123 Uncharacterized conser 96.5 0.00013 2.8E-09 64.3 -4.6 100 210-313 18-123 (388)
72 KOG4308 LRR-containing protein 95.6 6.2E-05 1.4E-09 73.5 -12.0 182 164-345 88-304 (478)
73 PF00560 LRR_1: Leucine Rich R 95.4 0.0049 1.1E-07 32.4 0.3 6 312-317 5-10 (22)
74 KOG4308 LRR-containing protein 95.2 0.00018 3.8E-09 70.3 -10.3 204 139-343 88-330 (478)
75 PF00560 LRR_1: Leucine Rich R 95.1 0.01 2.2E-07 31.2 1.0 21 332-353 1-21 (22)
76 KOG3864 Uncharacterized conser 93.1 0.023 5E-07 48.1 -0.3 84 81-172 101-185 (221)
77 PF13504 LRR_7: Leucine rich r 92.1 0.082 1.8E-06 25.7 1.0 7 335-341 5-11 (17)
78 KOG3864 Uncharacterized conser 91.6 0.029 6.4E-07 47.5 -1.5 80 113-195 103-184 (221)
79 smart00370 LRR Leucine-rich re 89.0 0.45 9.7E-06 25.8 2.3 22 110-134 1-22 (26)
80 smart00369 LRR_TYP Leucine-ric 89.0 0.45 9.7E-06 25.8 2.3 22 110-134 1-22 (26)
81 PF13516 LRR_6: Leucine Rich r 84.5 0.24 5.1E-06 26.4 -0.4 12 332-343 3-14 (24)
82 KOG0473 Leucine-rich repeat pr 82.8 0.035 7.6E-07 48.1 -6.2 60 161-222 63-122 (326)
83 KOG0473 Leucine-rich repeat pr 79.4 0.048 1E-06 47.3 -6.6 86 159-247 38-123 (326)
84 smart00364 LRR_BAC Leucine-ric 74.9 2.2 4.8E-05 23.3 1.4 16 332-348 3-18 (26)
85 smart00367 LRR_CC Leucine-rich 72.9 2.2 4.7E-05 23.1 1.1 15 138-152 2-16 (26)
86 smart00365 LRR_SD22 Leucine-ri 71.8 3.6 7.8E-05 22.5 1.8 14 331-344 2-15 (26)
87 smart00368 LRR_RI Leucine rich 69.6 4 8.6E-05 22.6 1.8 13 332-344 3-15 (28)
88 KOG4242 Predicted myosin-I-bin 65.7 33 0.00071 33.5 7.9 36 309-344 415-453 (553)
89 KOG3763 mRNA export factor TAP 62.6 5.9 0.00013 39.0 2.5 37 281-317 216-254 (585)
90 KOG3763 mRNA export factor TAP 55.5 4.6 9.9E-05 39.8 0.5 13 308-320 271-283 (585)
91 PF07172 GRP: Glycine rich pro 46.0 14 0.0003 27.6 1.6 13 1-13 1-13 (95)
92 KOG4242 Predicted myosin-I-bin 38.1 1.1E+02 0.0025 29.9 6.7 60 285-344 415-481 (553)
93 TIGR00864 PCC polycystin catio 20.8 63 0.0014 38.8 2.1 32 289-320 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.7e-43 Score=370.84 Aligned_cols=337 Identities=37% Similarity=0.621 Sum_probs=241.1
Q ss_pred CHHHHHHHHHHHHhCCCC----CCCCCCCCCCCCCCCccceEcCCCCCCCCcccEEEEEcCCCCCCCCcccccccccccc
Q 037919 33 DEDELLGLFEVMSSLIED----PGWGRAHPEPCTETPWPGVECEIGEDDPSIFHVTKVHIGPDIITPTCKISANISDALL 108 (397)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~----~~w~~~~~~~c~~~~w~gv~C~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~ 108 (397)
+++|+.||++||+++.++ .+|... .++|. |.||+|+.. ++|++|++++ +.++|.+++.+.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~---w~gv~c~~~------~~v~~L~L~~------~~i~~~~~~~~~ 90 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSS-ADVCL---WQGITCNNS------SRVVSIDLSG------KNISGKISSAIF 90 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCc---CcceecCCC------CcEEEEEecC------CCccccCChHHh
Confidence 457899999999998643 358643 47787 999999753 5899999997 677888888999
Q ss_pred CCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCC
Q 037919 109 KLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVN 188 (397)
Q Consensus 109 ~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 188 (397)
.+++|++|++++|.+.+ .+|.+.+..+++|++|++++| .+++.+|. +.+++|++|++++|.+.+.+|..+.++++
T Consensus 91 ~l~~L~~L~Ls~n~~~~--~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 91 RLPYIQTINLSNNQLSG--PIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred CCCCCCEEECCCCccCC--cCChHHhccCCCCCEEECcCC-ccccccCc--cccCCCCEEECcCCcccccCChHHhcCCC
Confidence 99999999999998876 678777778888888888888 67666664 44667777777777776666777777777
Q ss_pred CCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEccc
Q 037919 189 LEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQ 268 (397)
Q Consensus 189 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (397)
|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 77777777777666676677777777777777777666666677777777777777776666666666677777777777
Q ss_pred CCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCC
Q 037919 269 NCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348 (397)
Q Consensus 269 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 348 (397)
|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence 76666666666666667777776666666666666666666666666666666666666666666666666666666666
Q ss_pred ccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCc
Q 037919 349 PSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGND 393 (397)
Q Consensus 349 ~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~ 393 (397)
..+..+++ |+.|++++|+++|.+|..+...+.+ +.|++++|+
T Consensus 326 ~~~~~l~~--L~~L~L~~n~l~~~~p~~l~~~~~L-~~L~Ls~n~ 367 (968)
T PLN00113 326 VALTSLPR--LQVLQLWSNKFSGEIPKNLGKHNNL-TVLDLSTNN 367 (968)
T ss_pred hhHhcCCC--CCEEECcCCCCcCcCChHHhCCCCC-cEEECCCCe
Confidence 66666666 6666666666666666555444444 556665554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-35 Score=316.15 Aligned_cols=290 Identities=37% Similarity=0.550 Sum_probs=178.8
Q ss_pred ccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCC
Q 037919 97 CKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQ 176 (397)
Q Consensus 97 ~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~ 176 (397)
+.+.+.+|..+.++++|++|++++|.+.+ .+| ..+.++++|++|++++| .+.+.+|..++++++|++|++++|.+.
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p-~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVG--KIP-NSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCcccc--cCC-hhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCccEEECcCCccC
Confidence 34455566666666666666666666553 223 33566666666666666 566666666666666666666666666
Q ss_pred CCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccC
Q 037919 177 GNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIG 256 (397)
Q Consensus 177 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 256 (397)
+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEE
Q 037919 257 KLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTAL 336 (397)
Q Consensus 257 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 336 (397)
.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..++.+++|+.|++++|++++.+|..+..+++|+.|
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 66666666666666666666666666666666666666666666666666666666666666655555555555555555
Q ss_pred eCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCc
Q 037919 337 SLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGND 393 (397)
Q Consensus 337 ~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~ 393 (397)
++++|.+.+.+|..+..+++ |+.|++++|+++|.+|..+..++.+ ++|++++|+
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~--L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~Ls~N~ 439 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRS--LRRVRLQDNSFSGELPSEFTKLPLV-YFLDISNNN 439 (968)
T ss_pred ECcCCEecccCCHHHhCCCC--CCEEECcCCEeeeECChhHhcCCCC-CEEECcCCc
Confidence 55555555555555555555 5555555555555555544434444 445555443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-31 Score=250.67 Aligned_cols=305 Identities=25% Similarity=0.263 Sum_probs=202.0
Q ss_pred CcccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchh
Q 037919 79 SIFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSS 158 (397)
Q Consensus 79 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~ 158 (397)
..+|++.|+|.. +.++..-.+.++-++.|++||||.|.++ +++...|..-.++++|+|++| .++..-...
T Consensus 123 ~sghl~~L~L~~------N~I~sv~se~L~~l~alrslDLSrN~is---~i~~~sfp~~~ni~~L~La~N-~It~l~~~~ 192 (873)
T KOG4194|consen 123 ESGHLEKLDLRH------NLISSVTSEELSALPALRSLDLSRNLIS---EIPKPSFPAKVNIKKLNLASN-RITTLETGH 192 (873)
T ss_pred cccceeEEeeec------cccccccHHHHHhHhhhhhhhhhhchhh---cccCCCCCCCCCceEEeeccc-ccccccccc
Confidence 457899999986 4455555677888899999999999887 677766777788999999999 777777778
Q ss_pred hcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCc
Q 037919 159 LAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQ 238 (397)
Q Consensus 159 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 238 (397)
|.++.+|..|.|+.|.++...+..|.++++|+.|+|..|++.-.---.|.++++|+.|.+..|+++..-...|..+.+++
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 88888999999999998866566777789999999988887632234566777777777777776654445566666666
Q ss_pred eeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccC--------------
Q 037919 239 KIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLG-------------- 304 (397)
Q Consensus 239 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-------------- 304 (397)
+|++..|+++..-..++.+++.|+.|+++.|.|....++....+++|++|+|+.|+++...+..+.
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 666666666555455555666666666666666655555555566666666666666554444444
Q ss_pred ----------CCCCCCEEEcccccCCcCCh---hhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCcc
Q 037919 305 ----------TLQNLTSISVSECGLTGPIP---NFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG 371 (397)
Q Consensus 305 ----------~~~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g 371 (397)
.+++|++|||++|.+++.+- ..|..+++|+.|++.+|++....-.+|..++. |+.|||.+|.|..
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~--LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEA--LEHLDLGDNAIAS 430 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcc--cceecCCCCccee
Confidence 44555555555555554332 23445566666666666665333345556666 6666666666655
Q ss_pred ccCCChHHHhhccceEeccCCcCCCC
Q 037919 372 ELQFPEEFIERLGERLDVRGNDKLCT 397 (397)
Q Consensus 372 ~~p~~~~~~~~l~~~l~l~~N~~~C~ 397 (397)
.-|.++.-. ++ +.|.+..-.++||
T Consensus 431 Iq~nAFe~m-~L-k~Lv~nSssflCD 454 (873)
T KOG4194|consen 431 IQPNAFEPM-EL-KELVMNSSSFLCD 454 (873)
T ss_pred ecccccccc-hh-hhhhhcccceEEe
Confidence 555444333 33 4455555556664
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.8e-29 Score=235.88 Aligned_cols=298 Identities=22% Similarity=0.239 Sum_probs=182.1
Q ss_pred cEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcC
Q 037919 82 HVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAE 161 (397)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~ 161 (397)
.+..|+++. +.++..-...|.++++|+.+.+.+|.++ .||. +.....+|+.|+|.+| .++..-.+.+..
T Consensus 79 ~t~~Ldlsn------Nkl~~id~~~f~nl~nLq~v~l~~N~Lt---~IP~-f~~~sghl~~L~L~~N-~I~sv~se~L~~ 147 (873)
T KOG4194|consen 79 QTQTLDLSN------NKLSHIDFEFFYNLPNLQEVNLNKNELT---RIPR-FGHESGHLEKLDLRHN-LISSVTSEELSA 147 (873)
T ss_pred ceeeeeccc------cccccCcHHHHhcCCcceeeeeccchhh---hccc-ccccccceeEEeeecc-ccccccHHHHHh
Confidence 345566654 5666666677888999999999888876 4554 2234456888888888 677666677777
Q ss_pred CCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceee
Q 037919 162 IADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKID 241 (397)
Q Consensus 162 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 241 (397)
++.|+.|||+.|.++..--.+|..-.++++|+|++|.|+..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 88888888888887744444566667788888888888766666777777788888888887755556677777777777
Q ss_pred ccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCc
Q 037919 242 LGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTG 321 (397)
Q Consensus 242 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 321 (397)
+..|++.-.---.|..+++|+.|.+..|.+...-...|..+.++++|+|+.|++...-..++-+++.|+.|++++|.|..
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe
Confidence 77776642222345555555555555555543333344444555555555555444433444444555555555555444
Q ss_pred CChhhccCCCCCCEEeCCCCcCCcCCCc------------------------cccCCCcCCCCEEEccCCcCccccCCCh
Q 037919 322 PIPNFFSSLNTLTALSLDNNNLSGTVPP------------------------SLGSLPNSMLDQLNLSHNQLSGELQFPE 377 (397)
Q Consensus 322 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~------------------------~~~~l~~~~L~~L~l~~N~l~g~~p~~~ 377 (397)
..++.+..+++|+.|+|++|+++...+. .|..+.+ |++|||++|.+++.|....
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss--L~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS--LHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh--hhhhcCcCCeEEEEEecch
Confidence 4444444444555555555544433333 3444555 6666666666666655433
Q ss_pred HHH---hhccceEeccCCc
Q 037919 378 EFI---ERLGERLDVRGND 393 (397)
Q Consensus 378 ~~~---~~l~~~l~l~~N~ 393 (397)
.-+ +.+ +.|++-||+
T Consensus 386 ~~f~gl~~L-rkL~l~gNq 403 (873)
T KOG4194|consen 386 VAFNGLPSL-RKLRLTGNQ 403 (873)
T ss_pred hhhccchhh-hheeecCce
Confidence 222 222 456666665
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2e-27 Score=223.93 Aligned_cols=279 Identities=29% Similarity=0.362 Sum_probs=138.5
Q ss_pred ccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchh
Q 037919 103 ISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKE 182 (397)
Q Consensus 103 ~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 182 (397)
+|+.+..+..|+.||||.|.+. ++|.. +..-+++-.|+|++| .+..+...-+.++.-|-+||||+|++. .+|+.
T Consensus 95 iP~diF~l~dLt~lDLShNqL~---EvP~~-LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ 168 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLR---EVPTN-LEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQ 168 (1255)
T ss_pred CCchhcccccceeeecchhhhh---hcchh-hhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhh-hcCHH
Confidence 4555555556666666555554 33332 344455555555555 333222223344555555555555554 44444
Q ss_pred hcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCC-CCCCccccCCccCceeeccCCcCCCCCccccCCCCCC
Q 037919 183 LGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQ-GQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRL 261 (397)
Q Consensus 183 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 261 (397)
+.++.+|++|+|++|.+...--..+..+++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+. ..|..+.++.+|
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L 247 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL 247 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh
Confidence 555555555555555443221122233334444444443322 234445555555555555555554 344555555555
Q ss_pred cEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCC-cCChhhccCCCCCCEEeCCC
Q 037919 262 VLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLT-GPIPNFFSSLNTLTALSLDN 340 (397)
Q Consensus 262 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~Ls~ 340 (397)
+.|+|++|.++ .+........+|++|+++.|.++. .|..+.+++.|+.|.+.+|+++ +-+|..++.+.+|+.+..++
T Consensus 248 rrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 248 RRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred heeccCcCcee-eeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc
Confidence 55555555554 233333444455555555555543 4445555555555555555543 13455555555555555555
Q ss_pred CcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcCC
Q 037919 341 NNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDKL 395 (397)
Q Consensus 341 n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~~ 395 (397)
|.+. .+|+.+++++. |+.|.|+.|++. ++|..+-+++.+ +.||+..||.+
T Consensus 326 N~LE-lVPEglcRC~k--L~kL~L~~NrLi-TLPeaIHlL~~l-~vLDlreNpnL 375 (1255)
T KOG0444|consen 326 NKLE-LVPEGLCRCVK--LQKLKLDHNRLI-TLPEAIHLLPDL-KVLDLRENPNL 375 (1255)
T ss_pred cccc-cCchhhhhhHH--HHHhccccccee-echhhhhhcCCc-ceeeccCCcCc
Confidence 5554 45555555555 555555555553 455555555555 55555555543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=3.5e-27 Score=222.26 Aligned_cols=280 Identities=26% Similarity=0.380 Sum_probs=209.4
Q ss_pred ccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCc
Q 037919 101 ANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIP 180 (397)
Q Consensus 101 ~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 180 (397)
..+|..++.+.+|++|.++.|.+. .+..+ ++.++.|+.+++..|..-..-+|..+..+..|+.||||+|++. ..|
T Consensus 45 ~~vPeEL~~lqkLEHLs~~HN~L~---~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP 119 (1255)
T KOG0444|consen 45 EQVPEELSRLQKLEHLSMAHNQLI---SVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVP 119 (1255)
T ss_pred hhChHHHHHHhhhhhhhhhhhhhH---hhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcc
Confidence 457778888888888888888765 22222 5778888888888884445567888888888888888888887 778
Q ss_pred hhhcCCCCCCEEeeecCCCCCccCh-hccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCC
Q 037919 181 KELGRLVNLEQLDLSYNNLSGEIPD-EIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLS 259 (397)
Q Consensus 181 ~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 259 (397)
..+..-.++-.|+|++|+|. .+|. .+.++..|-.|++++|++. .+|+.+..+..|++|.+++|.+.-..-..+..++
T Consensus 120 ~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 120 TNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT 197 (1255)
T ss_pred hhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch
Confidence 88888888888888888887 4454 4667888888888888887 5677778888888888888876533233344566
Q ss_pred CCcEEEcccCCCC-CCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeC
Q 037919 260 RLVLLDLSQNCIN-GPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSL 338 (397)
Q Consensus 260 ~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 338 (397)
+|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+.. +|+.+.++++|+.|+|++|+|+ .+....+.+.+|+.|++
T Consensus 198 sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNl 275 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNL 275 (1255)
T ss_pred hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhcc
Confidence 7777777765433 3577778888888888888888754 6777778888888888888887 44444566678888888
Q ss_pred CCCcCCcCCCccccCCCcCCCCEEEccCCcCcc-ccCCChHHHhhccceEeccCCc
Q 037919 339 DNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG-ELQFPEEFIERLGERLDVRGND 393 (397)
Q Consensus 339 s~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g-~~p~~~~~~~~l~~~l~l~~N~ 393 (397)
|+|+++ .+|+.+.++++ |+.|.+.+|+++- -||..++.+.++ +.+.+++|.
T Consensus 276 SrNQLt-~LP~avcKL~k--L~kLy~n~NkL~FeGiPSGIGKL~~L-evf~aanN~ 327 (1255)
T KOG0444|consen 276 SRNQLT-VLPDAVCKLTK--LTKLYANNNKLTFEGIPSGIGKLIQL-EVFHAANNK 327 (1255)
T ss_pred ccchhc-cchHHHhhhHH--HHHHHhccCcccccCCccchhhhhhh-HHHHhhccc
Confidence 888888 78888888888 8888888887753 377777766666 566666654
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.2e-25 Score=201.89 Aligned_cols=251 Identities=33% Similarity=0.513 Sum_probs=145.5
Q ss_pred cccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCch
Q 037919 102 NISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPK 181 (397)
Q Consensus 102 ~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 181 (397)
.+.+.+.++..|.+|++..|... .+|++ ++.+..++.+++++| .+. ++|..++++.+|+.++.++|.+. .+|+
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~---~lp~a-ig~l~~l~~l~vs~n-~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~ 131 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLS---QLPAA-IGELEALKSLNVSHN-KLS-ELPEQIGSLISLVKLDCSSNELK-ELPD 131 (565)
T ss_pred hccHhhhcccceeEEEeccchhh---hCCHH-HHHHHHHHHhhcccc-hHh-hccHHHhhhhhhhhhhcccccee-ecCc
Confidence 34445566666666666666555 34444 355566666666665 333 45566666666666666666655 4555
Q ss_pred hhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCC
Q 037919 182 ELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRL 261 (397)
Q Consensus 182 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 261 (397)
+++.+..++.++..+|++. ..|..+.++.+|..+++.+|++.. .|+..-.++.|++|+...|-++ .+|+.++.+.+|
T Consensus 132 ~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L 208 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESL 208 (565)
T ss_pred hHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-cCChhhcchhhh
Confidence 5666666666666666665 455555666666666666666653 3333333666666666665554 555566666666
Q ss_pred cEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCC
Q 037919 262 VLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNN 341 (397)
Q Consensus 262 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 341 (397)
+.|++..|++. .+| .|.++..|++++++.|.+.....+....++++..||++.|+++ ..|+.+.-+++|.+||+|+|
T Consensus 209 ~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 209 ELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred HHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCC
Confidence 66666666665 444 4555666666666666554433334445666666666666665 55555555566666666666
Q ss_pred cCCcCCCccccCCCcCCCCEEEccCCcC
Q 037919 342 NLSGTVPPSLGSLPNSMLDQLNLSHNQL 369 (397)
Q Consensus 342 ~l~~~~p~~~~~l~~~~L~~L~l~~N~l 369 (397)
.++ .+|.+++++ . |+.|.+.+|.+
T Consensus 286 ~is-~Lp~sLgnl-h--L~~L~leGNPl 309 (565)
T KOG0472|consen 286 DIS-SLPYSLGNL-H--LKFLALEGNPL 309 (565)
T ss_pred ccc-cCCcccccc-e--eeehhhcCCch
Confidence 666 455556665 4 66666666655
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=5.3e-21 Score=205.50 Aligned_cols=272 Identities=21% Similarity=0.255 Sum_probs=142.5
Q ss_pred ccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchh
Q 037919 103 ISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKE 182 (397)
Q Consensus 103 ~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 182 (397)
++..+..+++|+.|+++++.... .+|. +..+++|++|++++| .....+|..+.++++|++|++++|...+.+|..
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~--~ip~--ls~l~~Le~L~L~~c-~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLK--EIPD--LSMATNLETLKLSDC-SSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcC--cCCc--cccCCcccEEEecCC-CCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 33444555555555555443221 2332 345555555555555 223345555555555555555554433344443
Q ss_pred hcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCC-------CCCcccc
Q 037919 183 LGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLV-------GSIPPAI 255 (397)
Q Consensus 183 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-------~~~~~~l 255 (397)
+ ++++|++|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|++|.+.++... ...+...
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhh
Confidence 3 4555555555555433333321 234555555555543 233322 2334444444332110 0001111
Q ss_pred CCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCE
Q 037919 256 GKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTA 335 (397)
Q Consensus 256 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 335 (397)
..+++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. .++|+.
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~ 850 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISD 850 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCE
Confidence 223466777777776666667777777777777777765444455444 5667777777776544444432 246777
Q ss_pred EeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCc
Q 037919 336 LSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGND 393 (397)
Q Consensus 336 L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~ 393 (397)
|+|++|.++ .+|..+..+++ |+.|++++|+--..+|.....++.+ +.+++++++
T Consensus 851 L~Ls~n~i~-~iP~si~~l~~--L~~L~L~~C~~L~~l~~~~~~L~~L-~~L~l~~C~ 904 (1153)
T PLN03210 851 LNLSRTGIE-EVPWWIEKFSN--LSFLDMNGCNNLQRVSLNISKLKHL-ETVDFSDCG 904 (1153)
T ss_pred eECCCCCCc-cChHHHhcCCC--CCEEECCCCCCcCccCcccccccCC-CeeecCCCc
Confidence 777777776 56767777777 7777777753323455555444455 556665554
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=6.1e-24 Score=190.71 Aligned_cols=278 Identities=22% Similarity=0.223 Sum_probs=177.4
Q ss_pred CCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEccc-ccCCCCCchhhcCCCCCCE
Q 037919 113 LKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQ-NNLQGNIPKELGRLVNLEQ 191 (397)
Q Consensus 113 L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~ 191 (397)
-..++|..|+++ .+|+..|+.+++|+.|||+.| .++.+-|++|.++++|..|.+.+ |+|+..--..|.++..|+-
T Consensus 69 tveirLdqN~I~---~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 69 TVEIRLDQNQIS---SIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred ceEEEeccCCcc---cCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 456667777776 677777777777777777777 77777777777777777776666 6676443345677777777
Q ss_pred EeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCC------------CCccccCCCC
Q 037919 192 LDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVG------------SIPPAIGKLS 259 (397)
Q Consensus 192 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~l~~l~ 259 (397)
|.+.-|++.-...+.+..+++|..|.+.+|.+...--..|..+..++.+.+..|.+.. ..|-.++...
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 7777777775556667777777777777777663322366667777777766665321 1111122222
Q ss_pred CCcEEEcccCCCCCCCcccCCC-CCCCCeeeccCCcCCCCCc-cccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEe
Q 037919 260 RLVLLDLSQNCINGPIPETLSG-LQQLQYLIVYHNPINSRIP-LFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALS 337 (397)
Q Consensus 260 ~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 337 (397)
-.....+...++...-+..+.. +..+.+=-.+.+...+..| ..|..+++|++|+|++|++++.-+.+|.....++.|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 2222222222222221221211 1111111122222333333 4677888888888888888888888888888888888
Q ss_pred CCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcCCCC
Q 037919 338 LDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDKLCT 397 (397)
Q Consensus 338 Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~~C~ 397 (397)
|..|++...--..|..+.. |+.|+|++|+|+...|..+.....+ ..|++-.|||.||
T Consensus 305 L~~N~l~~v~~~~f~~ls~--L~tL~L~~N~it~~~~~aF~~~~~l-~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSG--LKTLSLYDNQITTVAPGAFQTLFSL-STLNLLSNPFNCN 361 (498)
T ss_pred cCcchHHHHHHHhhhcccc--ceeeeecCCeeEEEeccccccccee-eeeehccCcccCc
Confidence 8888887555556777777 8888888888888777776655566 6788888888886
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=1.9e-24 Score=194.28 Aligned_cols=264 Identities=31% Similarity=0.492 Sum_probs=228.6
Q ss_pred CCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCC
Q 037919 111 PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190 (397)
Q Consensus 111 ~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 190 (397)
..|+.++++.|.+. .+.++ +.++..|.+|++..| .++ ..|++++.+..++.++.++|++. .+|+.++.+.++.
T Consensus 45 v~l~~lils~N~l~---~l~~d-l~nL~~l~vl~~~~n-~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE---VLRED-LKNLACLTVLNVHDN-KLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLV 117 (565)
T ss_pred cchhhhhhccCchh---hccHh-hhcccceeEEEeccc-hhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence 45667888888765 34444 689999999999999 555 57889999999999999999998 8899999999999
Q ss_pred EEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCC
Q 037919 191 QLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNC 270 (397)
Q Consensus 191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 270 (397)
.+++++|.+. +.|+.++.+..|+.++..+|+++ ..|+.+.++.++..+++.+|.+....|..+. ++.|+++|...|.
T Consensus 118 ~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 118 KLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL 194 (565)
T ss_pred hhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh
Confidence 9999999998 67888999999999999999998 6888899999999999999999855555454 9999999999998
Q ss_pred CCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhc-cCCCCCCEEeCCCCcCCcCCCc
Q 037919 271 INGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFF-SSLNTLTALSLDNNNLSGTVPP 349 (397)
Q Consensus 271 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~ 349 (397)
++ .+|+.++.+.+|+.|++..|++.. .| .|+.+..|++|+++.|.+. .+|... .+++++..||+..|+++ +.|+
T Consensus 195 L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pd 269 (565)
T KOG0472|consen 195 LE-TLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPD 269 (565)
T ss_pred hh-cCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCch
Confidence 77 899999999999999999999965 55 7899999999999999998 667655 48999999999999999 8899
Q ss_pred cccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcC
Q 037919 350 SLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDK 394 (397)
Q Consensus 350 ~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~ 394 (397)
.+..+.+ |++||+++|.+++ .|.+++++ .+ ++|-+.|||.
T Consensus 270 e~clLrs--L~rLDlSNN~is~-Lp~sLgnl-hL-~~L~leGNPl 309 (565)
T KOG0472|consen 270 EICLLRS--LERLDLSNNDISS-LPYSLGNL-HL-KFLALEGNPL 309 (565)
T ss_pred HHHHhhh--hhhhcccCCcccc-CCcccccc-ee-eehhhcCCch
Confidence 9999988 9999999999985 67677766 55 7889999984
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=3.3e-20 Score=187.80 Aligned_cols=321 Identities=23% Similarity=0.323 Sum_probs=219.4
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCC-------CCCCCCCCCCCC-------------CCccceEcCCCCCCCCcccEEEEEc
Q 037919 29 EMEMDEDELLGLFEVMSSLIEDP-------GWGRAHPEPCTE-------------TPWPGVECEIGEDDPSIFHVTKVHI 88 (397)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~-------~w~~~~~~~c~~-------------~~w~gv~C~~~~~~~~~~~v~~l~l 88 (397)
...+..+|.+.++++...+.-++ +|... .+.|.- .+-..|.|... .|+.+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~-~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~-------~vt~l~~ 128 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGA-DQYCILSENSQEILSIVFNTEGYTVEGGGK-------SVTYTRV 128 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCC-CcccccCCcchhhheeeecCCceEEecCCC-------ccccccc
Confidence 45677889999999888775542 47654 378872 23345778654 5555555
Q ss_pred CCCCCCCCc----c-----c----------ccc---ccccc-----cCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCC
Q 037919 89 GPDIITPTC----K-----I----------SAN---ISDAL-----LKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLE 141 (397)
Q Consensus 89 ~~~~~~~~~----~-----~----------~~~---~~~~l-----~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~ 141 (397)
.|....+.. . . .+. -..++ .-..+.+.|+++++.++ .+|... .+.|+
T Consensus 129 ~g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt---sLP~~I---p~~L~ 202 (754)
T PRK15370 129 TESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT---TIPACI---PEQIT 202 (754)
T ss_pred ccccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC---cCCccc---ccCCc
Confidence 442111100 0 0 000 00011 11245778999888776 455432 25789
Q ss_pred EEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCC
Q 037919 142 HLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWN 221 (397)
Q Consensus 142 ~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 221 (397)
.|++++| .+. .+|..+. ++|++|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|
T Consensus 203 ~L~Ls~N-~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 203 TLILDNN-ELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHN 272 (754)
T ss_pred EEEecCC-CCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCC
Confidence 9999999 676 4565554 58999999999987 5676554 47999999999988 6676554 47999999999
Q ss_pred CCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCcc
Q 037919 222 GLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPL 301 (397)
Q Consensus 222 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 301 (397)
+++ .+|..+. ++|+.|++++|++++ +|..+ .++|+.|++++|.++. +|..+. ++|+.|++++|.+++ +|.
T Consensus 273 ~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~ 342 (754)
T PRK15370 273 KIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPA 342 (754)
T ss_pred ccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CCh
Confidence 888 4666553 579999999998874 55443 2478889999998884 554432 688999999998876 454
Q ss_pred ccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHH-
Q 037919 302 FLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFI- 380 (397)
Q Consensus 302 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~- 380 (397)
.+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. +. |+.|++++|+++ .+|..+..+
T Consensus 343 ~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~s--L~~LdLs~N~L~-~LP~sl~~~~ 411 (754)
T PRK15370 343 SLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AA--LQIMQASRNNLV-RLPESLPHFR 411 (754)
T ss_pred hhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HH--HHHHhhccCCcc-cCchhHHHHh
Confidence 443 68999999999987 5676553 68999999999988 5666553 24 888999999987 566654333
Q ss_pred ---hhccceEeccCCcCC
Q 037919 381 ---ERLGERLDVRGNDKL 395 (397)
Q Consensus 381 ---~~l~~~l~l~~N~~~ 395 (397)
+.+ ..|++.+|++.
T Consensus 412 ~~~~~l-~~L~L~~Npls 428 (754)
T PRK15370 412 GEGPQP-TRIIVEYNPFS 428 (754)
T ss_pred hcCCCc-cEEEeeCCCcc
Confidence 223 57889898863
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=4.3e-20 Score=198.54 Aligned_cols=275 Identities=23% Similarity=0.291 Sum_probs=151.7
Q ss_pred ccccccCCC-CCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCch
Q 037919 103 ISDALLKLP-YLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPK 181 (397)
Q Consensus 103 ~~~~l~~l~-~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 181 (397)
+|..+..+| +|+.|.+.++.+. .+|..+ ...+|++|++.+| .+. .++..+..+++|++|+|+++...+.+|
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~---~lP~~f--~~~~L~~L~L~~s-~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip- 651 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR---CMPSNF--RPENLVKLQMQGS-KLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP- 651 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC---CCCCcC--CccCCcEEECcCc-ccc-ccccccccCCCCCEEECCCCCCcCcCC-
Confidence 344444433 3555555544433 233221 2344555555544 332 233444444555555555443322333
Q ss_pred hhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCC-----------
Q 037919 182 ELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGS----------- 250 (397)
Q Consensus 182 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~----------- 250 (397)
.+..+++|++|++++|.....+|..+..+++|+.|++++|..-..+|..+ ++++|+.|++++|...+.
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L 730 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWL 730 (1153)
T ss_pred ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCee
Confidence 24444555555555444333444444555555555555443333333332 344444444444433323
Q ss_pred ---------CccccCCCCCCcEEEcccCCCC-------CCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEc
Q 037919 251 ---------IPPAIGKLSRLVLLDLSQNCIN-------GPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISV 314 (397)
Q Consensus 251 ---------~~~~l~~l~~L~~L~l~~n~l~-------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 314 (397)
+|..+ .+++|++|.+.++... ...+......++|++|++++|.....+|..++++++|+.|++
T Consensus 731 ~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 731 DLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred ecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 33222 3344444444432111 000111122457888888888877778888888999999999
Q ss_pred ccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcC
Q 037919 315 SECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDK 394 (397)
Q Consensus 315 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~ 394 (397)
++|...+.+|..+ .+++|+.|++++|.....+|... ++ ++.|++++|.++ ++|..+..++++ ++|++++++.
T Consensus 810 s~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~---~n--L~~L~Ls~n~i~-~iP~si~~l~~L-~~L~L~~C~~ 881 (1153)
T PLN03210 810 ENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS---TN--ISDLNLSRTGIE-EVPWWIEKFSNL-SFLDMNGCNN 881 (1153)
T ss_pred CCCCCcCeeCCCC-CccccCEEECCCCCccccccccc---cc--cCEeECCCCCCc-cChHHHhcCCCC-CEEECCCCCC
Confidence 9886555777665 67889999999886555565432 45 889999999987 678777777777 8899988654
Q ss_pred C
Q 037919 395 L 395 (397)
Q Consensus 395 ~ 395 (397)
+
T Consensus 882 L 882 (1153)
T PLN03210 882 L 882 (1153)
T ss_pred c
Confidence 3
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=4.9e-20 Score=185.70 Aligned_cols=164 Identities=29% Similarity=0.337 Sum_probs=91.7
Q ss_pred CCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEc
Q 037919 187 VNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDL 266 (397)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 266 (397)
++|++|++++|++.+ +|.. ..+|+.|++++|.+++ +|.. ..+|+.|++++|++++ +|.. .++|+.|++
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~L 369 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWA 369 (788)
T ss_pred cccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehh
Confidence 345555555555442 2221 1234444555554442 2221 1356666666666653 3322 235555666
Q ss_pred ccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcC
Q 037919 267 SQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGT 346 (397)
Q Consensus 267 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 346 (397)
++|+++. +|.. ..+|+.|++++|.+++ +|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .
T Consensus 370 s~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~ 436 (788)
T PRK15387 370 YNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-R 436 (788)
T ss_pred hcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-c
Confidence 6666653 4432 2456777777777664 3322 256777777777776 35543 235667777777776 6
Q ss_pred CCccccCCCcCCCCEEEccCCcCccccCCCh
Q 037919 347 VPPSLGSLPNSMLDQLNLSHNQLSGELQFPE 377 (397)
Q Consensus 347 ~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~ 377 (397)
+|..+..++. ++.|++++|+|+|.+|..+
T Consensus 437 LP~sl~~L~~--L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 437 LPESLIHLSS--ETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cChHHhhccC--CCeEECCCCCCCchHHHHH
Confidence 6777777777 7777777777777666544
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.83 E-value=5.1e-22 Score=185.67 Aligned_cols=245 Identities=23% Similarity=0.269 Sum_probs=113.3
Q ss_pred ccccCCCCCCEEEcCCCCCCCCC-ccChhhhCCCCCCCEEeCcCCCCCc------ccCchhhcCCCCCCEEEcccccCCC
Q 037919 105 DALLKLPYLKTLSIFNCFVSSPV-TLSPTLFGALSSLEHLALYSNPTLS------GEIPSSLAEIADLRVLSLSQNNLQG 177 (397)
Q Consensus 105 ~~l~~l~~L~~L~ls~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~l~------~~~p~~l~~l~~L~~L~L~~n~l~~ 177 (397)
..+..+++|+.|+++++.++... ......+...+.|++++++++ .+. ..++..+..+++|++|++++|.+.+
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 34445555666666666553210 001122344555666666555 333 1123344445555555555555543
Q ss_pred CCchhhcCCCC---CCEEeeecCCCCCc----cChhccCC-CCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCC
Q 037919 178 NIPKELGRLVN---LEQLDLSYNNLSGE----IPDEIGGM-ISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVG 249 (397)
Q Consensus 178 ~~~~~l~~l~~---L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 249 (397)
..+..+..+.+ |++|++++|.+.+. +...+..+ ++|+.|++++|.+++....
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------- 155 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE-------------------- 155 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH--------------------
Confidence 33333333322 55555555554421 11223333 4455555555544421110
Q ss_pred CCccccCCCCCCcEEEcccCCCCCC----CcccCCCCCCCCeeeccCCcCCCCC----ccccCCCCCCCEEEcccccCCc
Q 037919 250 SIPPAIGKLSRLVLLDLSQNCINGP----IPETLSGLQQLQYLIVYHNPINSRI----PLFLGTLQNLTSISVSECGLTG 321 (397)
Q Consensus 250 ~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~ 321 (397)
.++..+..+++|++|++++|.+++. ++..+...++|++|++++|.+++.. ...+..+++|++|++++|.+++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 1112233344555555555555421 2223333445666666655554322 2233445666666666666654
Q ss_pred CChhhcc-----CCCCCCEEeCCCCcCCc----CCCccccCCCcCCCCEEEccCCcCccc
Q 037919 322 PIPNFFS-----SLNTLTALSLDNNNLSG----TVPPSLGSLPNSMLDQLNLSHNQLSGE 372 (397)
Q Consensus 322 ~~~~~~~-----~~~~L~~L~Ls~n~l~~----~~p~~~~~l~~~~L~~L~l~~N~l~g~ 372 (397)
.....+. ..+.|++|++++|.+++ .+...+..++. |+++++++|.++..
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~--L~~l~l~~N~l~~~ 293 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES--LLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC--ccEEECCCCCCcHH
Confidence 2222111 12566777777766652 22333444555 67777777776643
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=2.2e-19 Score=181.90 Aligned_cols=246 Identities=26% Similarity=0.414 Sum_probs=190.8
Q ss_pred cEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcC
Q 037919 82 HVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAE 161 (397)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~ 161 (397)
..+.++++. .+++ .+|..+. +.|+.|++++|.+. .+|...+ ++|++|++++| .+. .+|..+.
T Consensus 179 ~~~~L~L~~------~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt---sLP~~l~---~nL~~L~Ls~N-~Lt-sLP~~l~- 240 (754)
T PRK15370 179 NKTELRLKI------LGLT-TIPACIP--EQITTLILDNNELK---SLPENLQ---GNIKTLYANSN-QLT-SIPATLP- 240 (754)
T ss_pred CceEEEeCC------CCcC-cCCcccc--cCCcEEEecCCCCC---cCChhhc---cCCCEEECCCC-ccc-cCChhhh-
Confidence 567788875 2333 2444442 57999999999888 5676543 58999999999 777 4566554
Q ss_pred CCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceee
Q 037919 162 IADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKID 241 (397)
Q Consensus 162 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 241 (397)
++|+.|++++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++. +|..+. ++|+.|+
T Consensus 241 -~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~ 310 (754)
T PRK15370 241 -DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLN 310 (754)
T ss_pred -ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHH
Confidence 58999999999998 6787764 58999999999998 5676553 589999999999984 555443 4799999
Q ss_pred ccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCc
Q 037919 242 LGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTG 321 (397)
Q Consensus 242 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 321 (397)
+++|.++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|.++. +|..+ .++|++|++++|+++
T Consensus 311 Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt- 380 (754)
T PRK15370 311 VQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALT- 380 (754)
T ss_pred hcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCC-
Confidence 99999984 55443 3689999999999985 666553 789999999999975 45544 368999999999998
Q ss_pred CChhhccCCCCCCEEeCCCCcCCcCCCccc----cCCCcCCCCEEEccCCcCc
Q 037919 322 PIPNFFSSLNTLTALSLDNNNLSGTVPPSL----GSLPNSMLDQLNLSHNQLS 370 (397)
Q Consensus 322 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~----~~l~~~~L~~L~l~~N~l~ 370 (397)
.+|..+. ..|+.|++++|+++ .+|..+ ...+. +..+++.+|+++
T Consensus 381 ~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~--l~~L~L~~Npls 428 (754)
T PRK15370 381 NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQ--PTRIIVEYNPFS 428 (754)
T ss_pred CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCC--ccEEEeeCCCcc
Confidence 5666554 47999999999998 566544 34577 899999999987
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=3.9e-19 Score=179.24 Aligned_cols=255 Identities=25% Similarity=0.305 Sum_probs=195.9
Q ss_pred EEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCC
Q 037919 85 KVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIAD 164 (397)
Q Consensus 85 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~ 164 (397)
.|+++. +.++ .+|+.+. ++|+.|++++|.++ .+|. ..++|++|++++| .++. +|.. .++
T Consensus 205 ~LdLs~------~~Lt-sLP~~l~--~~L~~L~L~~N~Lt---~LP~----lp~~Lk~LdLs~N-~Lts-LP~l---p~s 263 (788)
T PRK15387 205 VLNVGE------SGLT-TLPDCLP--AHITTLVIPDNNLT---SLPA----LPPELRTLEVSGN-QLTS-LPVL---PPG 263 (788)
T ss_pred EEEcCC------CCCC-cCCcchh--cCCCEEEccCCcCC---CCCC----CCCCCcEEEecCC-ccCc-ccCc---ccc
Confidence 456665 4454 5676665 48999999999988 4553 3689999999999 7774 4532 478
Q ss_pred CCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccC
Q 037919 165 LRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGS 244 (397)
Q Consensus 165 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 244 (397)
|++|++++|.+. .+|.. ..+|+.|++++|+++ .+|. ..++|+.|++++|++++ +|.. ..+|+.|++++
T Consensus 264 L~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 264 LLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN 331 (788)
T ss_pred cceeeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---ccccccccccc
Confidence 999999999987 45542 357889999999998 4565 34789999999999985 4542 34688899999
Q ss_pred CcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCCh
Q 037919 245 NKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIP 324 (397)
Q Consensus 245 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 324 (397)
|.+++ +|. ...+|+.|++++|++++ +|.. .++|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|
T Consensus 332 N~L~~-LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP 398 (788)
T PRK15387 332 NQLTS-LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLP 398 (788)
T ss_pred Ccccc-ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCC
Confidence 99974 553 23589999999999994 5543 3578899999999986 4543 367999999999998 466
Q ss_pred hhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcCCC
Q 037919 325 NFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDKLC 396 (397)
Q Consensus 325 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~~C 396 (397)
.. .++|+.|++++|.++ .+|... .. |+.|++++|+|+ .+|..+..+..+ ++|++++|++..
T Consensus 399 ~l---~s~L~~LdLS~N~Ls-sIP~l~---~~--L~~L~Ls~NqLt-~LP~sl~~L~~L-~~LdLs~N~Ls~ 459 (788)
T PRK15387 399 VL---PSELKELMVSGNRLT-SLPMLP---SG--LLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPLSE 459 (788)
T ss_pred Cc---ccCCCEEEccCCcCC-CCCcch---hh--hhhhhhccCccc-ccChHHhhccCC-CeEECCCCCCCc
Confidence 53 368999999999998 467532 34 889999999998 788877767777 899999999753
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=2.8e-21 Score=180.64 Aligned_cols=260 Identities=22% Similarity=0.264 Sum_probs=155.1
Q ss_pred ccEEEEEcCCCCCCCCccccc----cccccccCCCCCCEEEcCCCCCCC--C-CccChhhhCCCCCCCEEeCcCCCCCcc
Q 037919 81 FHVTKVHIGPDIITPTCKISA----NISDALLKLPYLKTLSIFNCFVSS--P-VTLSPTLFGALSSLEHLALYSNPTLSG 153 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~ls~~~~~~--~-~~~~~~~~~~l~~L~~L~l~~n~~l~~ 153 (397)
..++.+++++ +.+++ .++..+...+.|++++++++.+.. . .......+..+++|++|++++| .+.+
T Consensus 23 ~~L~~l~l~~------~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~ 95 (319)
T cd00116 23 LCLQVLRLEG------NTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGP 95 (319)
T ss_pred hhccEEeecC------CCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCCh
Confidence 3588888887 34422 366678889999999999887652 1 0112245678999999999999 7776
Q ss_pred cCchhhcCCCC---CCEEEcccccCCC----CCchhhcCC-CCCCEEeeecCCCCCc----cChhccCCCCCCEEEccCC
Q 037919 154 EIPSSLAEIAD---LRVLSLSQNNLQG----NIPKELGRL-VNLEQLDLSYNNLSGE----IPDEIGGMISLTVLDLSWN 221 (397)
Q Consensus 154 ~~p~~l~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n 221 (397)
..+..+..+.+ |++|++++|.+.+ .+...+..+ ++|++|++++|.+++. ++..+..+++|++|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 66666665555 9999999999873 233456677 8999999999999843 3334566778888888888
Q ss_pred CCCCC----CCccccCCccCceeeccCCcCCCCC----ccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCC
Q 037919 222 GLQGQ----VPPSLGTLQLLQKIDLGSNKLVGSI----PPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHN 293 (397)
Q Consensus 222 ~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 293 (397)
.+++. ++..+..+++|++|++++|.+++.. ...+..+++|++|++++|.+++.....+..
T Consensus 176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~------------ 243 (319)
T cd00116 176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS------------ 243 (319)
T ss_pred CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH------------
Confidence 87742 2223344456666666666654321 122333444555555554444311111000
Q ss_pred cCCCCCccccCCCCCCCEEEcccccCCc----CChhhccCCCCCCEEeCCCCcCCcC----CCccccCC-CcCCCCEEEc
Q 037919 294 PINSRIPLFLGTLQNLTSISVSECGLTG----PIPNFFSSLNTLTALSLDNNNLSGT----VPPSLGSL-PNSMLDQLNL 364 (397)
Q Consensus 294 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l-~~~~L~~L~l 364 (397)
......+.|++|++++|.++. .+...+..+++|+++++++|.++.. +...+... +. ++.+++
T Consensus 244 -------~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~--~~~~~~ 314 (319)
T cd00116 244 -------ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNE--LESLWV 314 (319)
T ss_pred -------HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCc--hhhccc
Confidence 000112455666666665541 2233344445666666666666633 22222222 23 555665
Q ss_pred cCCc
Q 037919 365 SHNQ 368 (397)
Q Consensus 365 ~~N~ 368 (397)
.+|.
T Consensus 315 ~~~~ 318 (319)
T cd00116 315 KDDS 318 (319)
T ss_pred CCCC
Confidence 5554
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=2e-21 Score=191.00 Aligned_cols=128 Identities=30% Similarity=0.376 Sum_probs=68.2
Q ss_pred CCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCC
Q 037919 260 RLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLD 339 (397)
Q Consensus 260 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 339 (397)
.|+.|.+.+|.+++..-..+.+.++|+.|+|++|++.......+.++..|++|+|++|+++ .+|..+..++.|+.|...
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence 3445555555555544444555555566666665555544445555555556666666555 455555555555555555
Q ss_pred CCcCCcCCCccccCCCcCCCCEEEccCCcCc-cccCCChHHHhhccceEeccCCcC
Q 037919 340 NNNLSGTVPPSLGSLPNSMLDQLNLSHNQLS-GELQFPEEFIERLGERLDVRGNDK 394 (397)
Q Consensus 340 ~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~-g~~p~~~~~~~~l~~~l~l~~N~~ 394 (397)
+|++. ..| .+..++. |+.+|++.|+++ +.+|....+ +++ ++||++||.|
T Consensus 439 sN~l~-~fP-e~~~l~q--L~~lDlS~N~L~~~~l~~~~p~-p~L-kyLdlSGN~~ 488 (1081)
T KOG0618|consen 439 SNQLL-SFP-ELAQLPQ--LKVLDLSCNNLSEVTLPEALPS-PNL-KYLDLSGNTR 488 (1081)
T ss_pred CCcee-ech-hhhhcCc--ceEEecccchhhhhhhhhhCCC-ccc-ceeeccCCcc
Confidence 55555 344 4555555 666666666554 223322211 334 5666666654
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-20 Score=185.96 Aligned_cols=243 Identities=32% Similarity=0.401 Sum_probs=165.1
Q ss_pred CCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCE
Q 037919 112 YLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQ 191 (397)
Q Consensus 112 ~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 191 (397)
+|++++++.+.+. .+| +++..+.+|+.++...| .+ -.+|..+....+|+.|++..|.+. .+|.....+.+|++
T Consensus 242 nl~~~dis~n~l~---~lp-~wi~~~~nle~l~~n~N-~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS---NLP-EWIGACANLEALNANHN-RL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRT 314 (1081)
T ss_pred cceeeecchhhhh---cch-HHHHhcccceEecccch-hH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeee
Confidence 4555555555554 344 55555666666666555 44 244555555555666666666555 44555555666666
Q ss_pred EeeecCCCCCccChh-ccCCCC-CCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccC
Q 037919 192 LDLSYNNLSGEIPDE-IGGMIS-LTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQN 269 (397)
Q Consensus 192 L~L~~n~l~~~~~~~-l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 269 (397)
|+|..|++. .+|+. +..... |+.|+.+.|++.......=..++.|+.|++.+|.+++..-..+.+.++|+.|+|++|
T Consensus 315 LdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 315 LDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred eeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 666666655 33332 222222 445555555544211111124456889999999999887778888999999999999
Q ss_pred CCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcC-CC
Q 037919 270 CINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGT-VP 348 (397)
Q Consensus 270 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~p 348 (397)
++.......+.++..|++|+|++|+++. +|..+.+++.|++|...+|++. ..| .+..++.|+.+|+|.|+++-. +|
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhh
Confidence 9985444668899999999999999976 5688889999999999999997 777 678899999999999999843 44
Q ss_pred ccccCCCcCCCCEEEccCCc
Q 037919 349 PSLGSLPNSMLDQLNLSHNQ 368 (397)
Q Consensus 349 ~~~~~l~~~~L~~L~l~~N~ 368 (397)
... ..|+ |++||+++|.
T Consensus 471 ~~~-p~p~--LkyLdlSGN~ 487 (1081)
T KOG0618|consen 471 EAL-PSPN--LKYLDLSGNT 487 (1081)
T ss_pred hhC-CCcc--cceeeccCCc
Confidence 333 2267 9999999996
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=1.3e-20 Score=169.34 Aligned_cols=302 Identities=22% Similarity=0.267 Sum_probs=207.6
Q ss_pred CCCCCCCCCCccc--eEcCCCC----CCCCcccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCcc
Q 037919 56 AHPEPCTETPWPG--VECEIGE----DDPSIFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTL 129 (397)
Q Consensus 56 ~~~~~c~~~~w~g--v~C~~~~----~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~ 129 (397)
..|.+|.++.-.| |+|+... ...-....+.|+|.. +.++...+.+|+.+++|+.||||+|.++ .|
T Consensus 36 ~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdq------N~I~~iP~~aF~~l~~LRrLdLS~N~Is---~I 106 (498)
T KOG4237|consen 36 ACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQ------NQISSIPPGAFKTLHRLRRLDLSKNNIS---FI 106 (498)
T ss_pred cCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEecc------CCcccCChhhccchhhhceecccccchh---hc
Confidence 3456777544334 7887532 111234567888875 6777777889999999999999999998 78
Q ss_pred ChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccCh-hcc
Q 037919 130 SPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPD-EIG 208 (397)
Q Consensus 130 ~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~ 208 (397)
.++.|++++.|.+|-+.+|..++...-..|++|..|+.|.+.-|++.-.....|..+++|..|.+.+|.+. .++. .+.
T Consensus 107 ~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~ 185 (498)
T KOG4237|consen 107 APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQ 185 (498)
T ss_pred ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhcccccc
Confidence 89999999999999888844888777778999999999999999998777788999999999999999988 4454 788
Q ss_pred CCCCCCEEEccCCCCC------------CCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEE--Ecc-cCCCCC
Q 037919 209 GMISLTVLDLSWNGLQ------------GQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLL--DLS-QNCING 273 (397)
Q Consensus 209 ~l~~L~~L~l~~n~l~------------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L--~l~-~n~l~~ 273 (397)
.+..++.+.+..|.+- ...|..++...-.....+.+.++...-+..|.. .++.+ .++ .+...+
T Consensus 186 ~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~ 263 (498)
T KOG4237|consen 186 GLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDS 263 (498)
T ss_pred chhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCC
Confidence 8999999998887632 112223333333333333333332221211111 11111 111 121222
Q ss_pred CCc-ccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCcccc
Q 037919 274 PIP-ETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLG 352 (397)
Q Consensus 274 ~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 352 (397)
.-| ..|..+++|+.|++++|.+++.-+.+|.....+++|.|..|++...-...|.++..|+.|+|++|+|+...|.+|.
T Consensus 264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 223 3466777777777777777777777777777777777777777655556677777777777777777777777777
Q ss_pred CCCcCCCCEEEccCCcCcc
Q 037919 353 SLPNSMLDQLNLSHNQLSG 371 (397)
Q Consensus 353 ~l~~~~L~~L~l~~N~l~g 371 (397)
.+.. |.+|+|-.|.+..
T Consensus 344 ~~~~--l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 344 TLFS--LSTLNLLSNPFNC 360 (498)
T ss_pred ccce--eeeeehccCcccC
Confidence 7766 7777777776653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=4.6e-19 Score=142.44 Aligned_cols=157 Identities=31% Similarity=0.482 Sum_probs=106.3
Q ss_pred hcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCc
Q 037919 159 LAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQ 238 (397)
Q Consensus 159 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 238 (397)
+..+.+++.|.+++|+++ .+|+.+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. .+|..|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445567777778888877 66777777788888888888877 67777778888888887777766 6677777777777
Q ss_pred eeeccCCcCCC-CCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccc
Q 037919 239 KIDLGSNKLVG-SIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSEC 317 (397)
Q Consensus 239 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 317 (397)
.||+..|++.. .+|..|..++.|+.|.+++|.+. .+|..++++++|+.|.+..|.+-. .|..++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccc
Confidence 77777776643 45555666666666666666665 555566666666666666655533 4555555555566666665
Q ss_pred cCC
Q 037919 318 GLT 320 (397)
Q Consensus 318 ~l~ 320 (397)
+++
T Consensus 184 rl~ 186 (264)
T KOG0617|consen 184 RLT 186 (264)
T ss_pred eee
Confidence 555
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=6e-19 Score=141.77 Aligned_cols=183 Identities=28% Similarity=0.476 Sum_probs=151.1
Q ss_pred hcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCc
Q 037919 183 LGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLV 262 (397)
Q Consensus 183 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 262 (397)
+.++.+++.|.+++|+++ .+|..+..+.+|+.|++.+|++. .+|..++++++|+.|+++-|.+. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 446678888999999998 67777999999999999999998 78889999999999999999887 7889999999999
Q ss_pred EEEcccCCCCC-CCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCC
Q 037919 263 LLDLSQNCING-PIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNN 341 (397)
Q Consensus 263 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 341 (397)
.||+..|.+.. .+|..|-.+..|+.|++++|.+. .+|..++++++|+.|.++.|.+- .+|..++.+..|+.|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999998875 56777778888999999999884 46777889999999999999887 78888999999999999999
Q ss_pred cCCcCCCccccCCCc-CCCCEEEccCCcCcc
Q 037919 342 NLSGTVPPSLGSLPN-SMLDQLNLSHNQLSG 371 (397)
Q Consensus 342 ~l~~~~p~~~~~l~~-~~L~~L~l~~N~l~g 371 (397)
+++ .+|+.++++.- ..-+.+.+.+|.+..
T Consensus 184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 184 RLT-VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred eee-ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 998 77776665432 003445666666543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=1e-14 Score=147.17 Aligned_cols=156 Identities=27% Similarity=0.545 Sum_probs=97.5
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCC--CCCCCCCCCCCC--CCccceEcCCCCCCCCcccEEEEEcCCCCCCCCcccccccc
Q 037919 29 EMEMDEDELLGLFEVMSSLIEDP--GWGRAHPEPCTE--TPWPGVECEIGEDDPSIFHVTKVHIGPDIITPTCKISANIS 104 (397)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~--~w~~~~~~~c~~--~~w~gv~C~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~ 104 (397)
...+.+.|..||+.+|+++..+. +|.. ++|.. .+|.||.|...... ...+|+.|+|++ +.+.|.+|
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~~~W~g---~~C~p~~~~w~Gv~C~~~~~~-~~~~v~~L~L~~------n~L~g~ip 435 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLRFGWNG---DPCVPQQHPWSGADCQFDSTK-GKWFIDGLGLDN------QGLRGFIP 435 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcccCCCCC---CCCCCcccccccceeeccCCC-CceEEEEEECCC------CCccccCC
Confidence 34567789999999999986543 6853 67752 36999999643111 123588888876 56777777
Q ss_pred ccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhc
Q 037919 105 DALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELG 184 (397)
Q Consensus 105 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 184 (397)
..+.++++|+.|+|++|.+.+ .+|.. ++.+++|++|+|++| .++|.+|..++++++|++|+|++|.+++.+|..+.
T Consensus 436 ~~i~~L~~L~~L~Ls~N~l~g--~iP~~-~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 436 NDISKLRHLQSINLSGNSIRG--NIPPS-LGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred HHHhCCCCCCEEECCCCcccC--cCChH-HhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence 777777777777777666654 33332 455666666666666 55666666666666666666666666655555554
Q ss_pred CC-CCCCEEeeecCC
Q 037919 185 RL-VNLEQLDLSYNN 198 (397)
Q Consensus 185 ~l-~~L~~L~L~~n~ 198 (397)
.. .++..+++.+|.
T Consensus 512 ~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 512 GRLLHRASFNFTDNA 526 (623)
T ss_pred hccccCceEEecCCc
Confidence 32 234445555544
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.37 E-value=1.1e-12 Score=132.60 Aligned_cols=112 Identities=29% Similarity=0.406 Sum_probs=99.9
Q ss_pred CCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEE
Q 037919 284 QLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLN 363 (397)
Q Consensus 284 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~ 363 (397)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.+..+++ |+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~--L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS--LRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC--CCEEE
Confidence 3788999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccCCcCccccCCChHHHhhccceEeccCCcCCCC
Q 037919 364 LSHNQLSGELQFPEEFIERLGERLDVRGNDKLCT 397 (397)
Q Consensus 364 l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~~C~ 397 (397)
|++|+++|.+|..+.........+++.+|+.+|.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 9999999999987653322125789999999994
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=2.9e-12 Score=123.45 Aligned_cols=200 Identities=37% Similarity=0.540 Sum_probs=148.9
Q ss_pred EEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCC-CCCEEeeecCCCCCccChhccCCCCCCEEEccC
Q 037919 142 HLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLV-NLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSW 220 (397)
Q Consensus 142 ~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 220 (397)
.+++..+ .+.. -...+..++.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|+++.
T Consensus 97 ~l~~~~~-~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLN-RLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeecccc-cccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 5777766 3322 2334555678899999999887 6666666664 8999999999887 5666688889999999999
Q ss_pred CCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCc
Q 037919 221 NGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIP 300 (397)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 300 (397)
|++. .++...+..+.|+.|++++|++. .+|........|+++.+++|.+. ..+..+..++++..+.+.+|++... +
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-P 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-c
Confidence 9888 55655557888889999999887 55655556667888888888544 3556677788888888888877542 5
Q ss_pred cccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccc
Q 037919 301 LFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSL 351 (397)
Q Consensus 301 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 351 (397)
..++.++.++.|++++|.++ .++. ++...+++.|++++|.+....|...
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 66777788888888888887 4444 7788888888888888886655443
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=5.2e-13 Score=119.19 Aligned_cols=233 Identities=26% Similarity=0.328 Sum_probs=167.3
Q ss_pred hCCCCCCCEEeCcCCCCCcc----cCchhhcCCCCCCEEEcccccCCC----CCch-------hhcCCCCCCEEeeecCC
Q 037919 134 FGALSSLEHLALYSNPTLSG----EIPSSLAEIADLRVLSLSQNNLQG----NIPK-------ELGRLVNLEQLDLSYNN 198 (397)
Q Consensus 134 ~~~l~~L~~L~l~~n~~l~~----~~p~~l~~l~~L~~L~L~~n~l~~----~~~~-------~l~~l~~L~~L~L~~n~ 198 (397)
...+..++.+++++| .+.. .+...+.+.+.|+..+++.- ++| .+|+ .+..+++|++++||+|-
T Consensus 26 ~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred hcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 567889999999999 6653 24456778889999998863 333 3444 34567899999999999
Q ss_pred CCCccCh----hccCCCCCCEEEccCCCCCCCC-------------CccccCCccCceeeccCCcCCCC----CccccCC
Q 037919 199 LSGEIPD----EIGGMISLTVLDLSWNGLQGQV-------------PPSLGTLQLLQKIDLGSNKLVGS----IPPAIGK 257 (397)
Q Consensus 199 l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~-------------~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~ 257 (397)
+....+. .+.++..|++|.|.+|.+.... ....++-++|+++..++|++... +...|..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 8744443 3567889999999999876321 12234557889999998887643 2244566
Q ss_pred CCCCcEEEcccCCCCCC----CcccCCCCCCCCeeeccCCcCCCCC----ccccCCCCCCCEEEcccccCCcCChhhc--
Q 037919 258 LSRLVLLDLSQNCINGP----IPETLSGLQQLQYLIVYHNPINSRI----PLFLGTLQNLTSISVSECGLTGPIPNFF-- 327 (397)
Q Consensus 258 l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~-- 327 (397)
.+.|+.+.+..|.+... +...+..++.|+.|+|.+|.++... ...+..+++|+.|++++|.+.......+
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 78899999999887632 2356778899999999999886533 3455667889999999998876544333
Q ss_pred ---cCCCCCCEEeCCCCcCCc----CCCccccCCCcCCCCEEEccCCcCc
Q 037919 328 ---SSLNTLTALSLDNNNLSG----TVPPSLGSLPNSMLDQLNLSHNQLS 370 (397)
Q Consensus 328 ---~~~~~L~~L~Ls~n~l~~----~~p~~~~~l~~~~L~~L~l~~N~l~ 370 (397)
...|+|++|.+.+|.++- .+...+...|. |..|+|++|++.
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d--L~kLnLngN~l~ 311 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPD--LEKLNLNGNRLG 311 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh--hHHhcCCccccc
Confidence 346889999999998873 23334556677 899999999983
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=3.3e-13 Score=120.44 Aligned_cols=242 Identities=19% Similarity=0.253 Sum_probs=179.8
Q ss_pred ccccccccCCCCCCEEEcCCCCCCCCC-ccChhhhCCCCCCCEEeCcCCCCCccc----Cchh-------hcCCCCCCEE
Q 037919 101 ANISDALLKLPYLKTLSIFNCFVSSPV-TLSPTLFGALSSLEHLALYSNPTLSGE----IPSS-------LAEIADLRVL 168 (397)
Q Consensus 101 ~~~~~~l~~l~~L~~L~ls~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~l~~~----~p~~-------l~~l~~L~~L 168 (397)
+.+-+.+..+..++.+++++|.+.... ......+.+.+.|+..+++.- ++|. +|++ +..+++|++|
T Consensus 20 ~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~l 97 (382)
T KOG1909|consen 20 KDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKL 97 (382)
T ss_pred hhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEe
Confidence 445566778899999999999887421 122334678889999999873 5553 4443 4567899999
Q ss_pred EcccccCCCCCchh----hcCCCCCCEEeeecCCCCCcc-------------ChhccCCCCCCEEEccCCCCCCC----C
Q 037919 169 SLSQNNLQGNIPKE----LGRLVNLEQLDLSYNNLSGEI-------------PDEIGGMISLTVLDLSWNGLQGQ----V 227 (397)
Q Consensus 169 ~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~-------------~~~l~~l~~L~~L~l~~n~l~~~----~ 227 (397)
+||.|-+....+.. +..+..|++|.|.+|.+...- ......-++|+++...+|++... +
T Consensus 98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred eccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence 99999987555544 456789999999999876221 11234457899999999998643 2
Q ss_pred CccccCCccCceeeccCCcCCCC----CccccCCCCCCcEEEcccCCCCCC----CcccCCCCCCCCeeeccCCcCCCCC
Q 037919 228 PPSLGTLQLLQKIDLGSNKLVGS----IPPAIGKLSRLVLLDLSQNCINGP----IPETLSGLQQLQYLIVYHNPINSRI 299 (397)
Q Consensus 228 ~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~ 299 (397)
...|...+.|+.+.+..|.+... +...+..+++|+.||+.+|.++.. +...+..+++|++|++++|.+....
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence 34567788999999999987532 224568899999999999998742 4466788899999999999987654
Q ss_pred cccc-----CCCCCCCEEEcccccCCcC----ChhhccCCCCCCEEeCCCCcCC
Q 037919 300 PLFL-----GTLQNLTSISVSECGLTGP----IPNFFSSLNTLTALSLDNNNLS 344 (397)
Q Consensus 300 ~~~~-----~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~ 344 (397)
...+ ...+.|+.|.+.+|.++.. +...+...+.|..|+|++|.+.
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 4332 3468999999999999753 2334456789999999999993
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=3.5e-12 Score=122.88 Aligned_cols=200 Identities=31% Similarity=0.521 Sum_probs=152.0
Q ss_pred EEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCC-CCCEEEcccccCCCCCchhhcCCCCCCEEe
Q 037919 115 TLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIA-DLRVLSLSQNNLQGNIPKELGRLVNLEQLD 193 (397)
Q Consensus 115 ~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 193 (397)
.+++..+.+.. . ......++.++.|++.+| .++ .++.....+. +|++|++++|.+. .+|..+..+++|+.|+
T Consensus 97 ~l~~~~~~~~~--~--~~~~~~~~~l~~L~l~~n-~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~ 169 (394)
T COG4886 97 SLDLNLNRLRS--N--ISELLELTNLTSLDLDNN-NIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLD 169 (394)
T ss_pred eeecccccccc--C--chhhhcccceeEEecCCc-ccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccc
Confidence 56666666522 1 112345578999999988 555 4555666664 8999999999987 6666788899999999
Q ss_pred eecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCC
Q 037919 194 LSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCING 273 (397)
Q Consensus 194 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 273 (397)
+++|++. .+|......++|+.|++++|++. .+|........|++|.+++|... ..+..+..++++..+.+.+|++.
T Consensus 170 l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~- 245 (394)
T COG4886 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE- 245 (394)
T ss_pred cCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-
Confidence 9999988 56665568889999999999988 56665556667999999988543 35566778888888888888876
Q ss_pred CCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhc
Q 037919 274 PIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFF 327 (397)
Q Consensus 274 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 327 (397)
.++..+..++++++|++++|.++.... ++...+++.|++++|.++...+...
T Consensus 246 ~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 246 DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 346777888889999999998877544 7788999999999999887666544
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=3.4e-13 Score=127.31 Aligned_cols=158 Identities=30% Similarity=0.486 Sum_probs=68.0
Q ss_pred CchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCC
Q 037919 155 IPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTL 234 (397)
Q Consensus 155 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 234 (397)
+|..+..+..|+.+.++.|.+. .+|..+.++..|+++|++.|++. ..|..+..+ -|+.|-+++|+++ .+|+.++..
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNkl~-~lp~~ig~~ 165 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNKLT-SLPEEIGLL 165 (722)
T ss_pred CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCccc-cCCcccccc
Confidence 3333444444444444444443 34444444444444444444444 333333332 2444444444444 344444444
Q ss_pred ccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEc
Q 037919 235 QLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISV 314 (397)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 314 (397)
++|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|+.+..+ .|..||++.|+++. +|..|.+++.|++|-|
T Consensus 166 ~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~-iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISY-LPVDFRKMRHLQVLQL 241 (722)
T ss_pred hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceee-cchhhhhhhhheeeee
Confidence 44444444444443 33444444444444444444444 233333322 24444444444432 3444444444444444
Q ss_pred ccccCC
Q 037919 315 SECGLT 320 (397)
Q Consensus 315 ~~n~l~ 320 (397)
.+|.+.
T Consensus 242 enNPLq 247 (722)
T KOG0532|consen 242 ENNPLQ 247 (722)
T ss_pred ccCCCC
Confidence 444443
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=2.4e-13 Score=128.23 Aligned_cols=194 Identities=32% Similarity=0.428 Sum_probs=162.9
Q ss_pred CCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeec
Q 037919 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDL 242 (397)
Q Consensus 163 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 242 (397)
.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|.+++++.|+++ .+|..+..++ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33455689999997 88999989999999999999987 78889999999999999999998 6788888876 899999
Q ss_pred cCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcC
Q 037919 243 GSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGP 322 (397)
Q Consensus 243 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 322 (397)
++|+++ .+|..++....|..||.+.|.+. .+|..++++.+|+.|.+..|.+... |..+. .-.|..||++.|+++ .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~l-p~El~-~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDL-PEELC-SLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhC-CHHHh-CCceeeeecccCcee-e
Confidence 999987 78888998899999999999988 7888999999999999999998764 44455 456889999999998 8
Q ss_pred ChhhccCCCCCCEEeCCCCcCCcCCCcccc---CCCcCCCCEEEccCCc
Q 037919 323 IPNFFSSLNTLTALSLDNNNLSGTVPPSLG---SLPNSMLDQLNLSHNQ 368 (397)
Q Consensus 323 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~---~l~~~~L~~L~l~~N~ 368 (397)
+|..|.++++|++|-|.+|.+. .-|..++ +..- .++|+..-++
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHI--FKyL~~qA~q 271 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHI--FKYLSTQACQ 271 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceee--eeeecchhcc
Confidence 9999999999999999999998 3444432 2333 5566666664
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4e-12 Score=116.65 Aligned_cols=208 Identities=25% Similarity=0.225 Sum_probs=110.0
Q ss_pred CCCCCCCEEeCcCCCCCcccCc-hhhcCCCCCCEEEcccccCCC--CCchhhcCCCCCCEEeeecCCCCCccChh-ccCC
Q 037919 135 GALSSLEHLALYSNPTLSGEIP-SSLAEIADLRVLSLSQNNLQG--NIPKELGRLVNLEQLDLSYNNLSGEIPDE-IGGM 210 (397)
Q Consensus 135 ~~l~~L~~L~l~~n~~l~~~~p-~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l 210 (397)
+++.+|+.+.|.++ .+....- .....|++++.|||+.|-+.. .+......+|+|+.|+|+.|.+.-..... -..+
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 35566666666665 3221111 345566777777777766552 22233456677777777777665221111 1245
Q ss_pred CCCCEEEccCCCCCCC-CCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCc--ccCCCCCCCCe
Q 037919 211 ISLTVLDLSWNGLQGQ-VPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIP--ETLSGLQQLQY 287 (397)
Q Consensus 211 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~ 287 (397)
+.|+.|.++.|+++-. +-..+..+|+|+.|++..|............+..|++|||++|.+-. .+ ...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence 6677777777766521 22234456677777777664222222223345566777777766652 22 34556666777
Q ss_pred eeccCCcCCCCC-ccc-----cCCCCCCCEEEcccccCCcC-ChhhccCCCCCCEEeCCCCcCC
Q 037919 288 LIVYHNPINSRI-PLF-----LGTLQNLTSISVSECGLTGP-IPNFFSSLNTLTALSLDNNNLS 344 (397)
Q Consensus 288 L~L~~n~l~~~~-~~~-----~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~ 344 (397)
|+++.+.+.+.- |+. ....++|++|++..|++.+. .-..+..+++|+.|.+..|.++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 777666664321 111 23346666666666666421 1122333455556665555554
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.6e-12 Score=116.97 Aligned_cols=211 Identities=25% Similarity=0.244 Sum_probs=153.2
Q ss_pred cCCCCCCEEEcccccCCCCCc--hhhcCCCCCCEEeeecCCCCC--ccChhccCCCCCCEEEccCCCCCCCCCc-cccCC
Q 037919 160 AEIADLRVLSLSQNNLQGNIP--KELGRLVNLEQLDLSYNNLSG--EIPDEIGGMISLTVLDLSWNGLQGQVPP-SLGTL 234 (397)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l 234 (397)
.++.+|+.+.|.++.+. ..+ .....+++++.|||+.|-+.. .+......+|+|+.|+++.|++...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 56889999999998876 333 356789999999999998773 3445567899999999999998633222 22467
Q ss_pred ccCceeeccCCcCCCC-CccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCC-ccccCCCCCCCEE
Q 037919 235 QLLQKIDLGSNKLVGS-IPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRI-PLFLGTLQNLTSI 312 (397)
Q Consensus 235 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L 312 (397)
+.|+.|.++.|.++.. +...+..+++|+.|++..|..-........-++.|++|+|++|.+-... ....+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 8899999999998742 2233456899999999999522222223345678999999999875432 2356788999999
Q ss_pred EcccccCCcC-Chhh-----ccCCCCCCEEeCCCCcCCcC-CCccccCCCcCCCCEEEccCCcCcccc
Q 037919 313 SVSECGLTGP-IPNF-----FSSLNTLTALSLDNNNLSGT-VPPSLGSLPNSMLDQLNLSHNQLSGEL 373 (397)
Q Consensus 313 ~L~~n~l~~~-~~~~-----~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~~~L~~L~l~~N~l~g~~ 373 (397)
+++.+.++.. .|+. ...+++|++|++..|++..- ....+..+++ ++.|.+..|.++-+-
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n--lk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN--LKHLRITLNYLNKET 342 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch--hhhhhcccccccccc
Confidence 9999988743 2332 35678999999999999631 1234556677 888888888887543
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=7.3e-11 Score=122.18 Aligned_cols=109 Identities=31% Similarity=0.426 Sum_probs=93.8
Q ss_pred CCCCCCEEEcCCCC--CCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCC
Q 037919 109 KLPYLKTLSIFNCF--VSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRL 186 (397)
Q Consensus 109 ~l~~L~~L~ls~~~--~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 186 (397)
+++.|++|-+..|. +. .++..+|..++.|++||+++| .-.+.+|..++.+-+|++|+++++.+. .+|..+.++
T Consensus 543 ~~~~L~tLll~~n~~~l~---~is~~ff~~m~~LrVLDLs~~-~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLL---EISGEFFRSLPLLRVLDLSGN-SSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNL 617 (889)
T ss_pred CCCccceEEEeecchhhh---hcCHHHHhhCcceEEEECCCC-CccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHH
Confidence 45579999998885 33 677888999999999999998 566789999999999999999999998 899999999
Q ss_pred CCCCEEeeecCCCCCccChhccCCCCCCEEEccCCC
Q 037919 187 VNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG 222 (397)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 222 (397)
..|.+|++..+.....+|.....+++|++|.+..-.
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999999999888765667777779999999987654
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=3.2e-11 Score=105.82 Aligned_cols=137 Identities=28% Similarity=0.363 Sum_probs=90.4
Q ss_pred cccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCC
Q 037919 230 SLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNL 309 (397)
Q Consensus 230 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 309 (397)
.+..+..|+++|+++|.++ .+..++.-.+.++.|+++.|++... ..++.+++|..||+++|.++... .+-..+-++
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV-GWHLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh-hhHhhhcCE
Confidence 3444556777777777766 4555566667777777777777632 23667777788888877765432 222345677
Q ss_pred CEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcC-CCccccCCCcCCCCEEEccCCcCccccC
Q 037919 310 TSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGT-VPPSLGSLPNSMLDQLNLSHNQLSGELQ 374 (397)
Q Consensus 310 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~~~L~~L~l~~N~l~g~~p 374 (397)
++|.|+.|.+.. + ..++.+-+|..||+++|+|... -...++++|. |+.+.|.+|.+.+...
T Consensus 355 KtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC--LE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 355 KTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC--LETLRLTGNPLAGSVD 416 (490)
T ss_pred eeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccH--HHHHhhcCCCccccch
Confidence 777888777642 1 2345566778888888887632 2245778888 8888888888876543
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=1.7e-10 Score=96.53 Aligned_cols=80 Identities=38% Similarity=0.505 Sum_probs=14.5
Q ss_pred CCCCEEEccCCCCCCCCCcccc-CCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccC-CCCCCCCee
Q 037919 211 ISLTVLDLSWNGLQGQVPPSLG-TLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETL-SGLQQLQYL 288 (397)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L 288 (397)
.++++|++.+|.++. + +.++ .+.+|+.|++++|.++.. ..+..+++|++|++++|+++. +.+.+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred ccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 344555555555542 1 2232 244455555555554422 123344444555555554442 21112 234444444
Q ss_pred eccCCcC
Q 037919 289 IVYHNPI 295 (397)
Q Consensus 289 ~L~~n~l 295 (397)
++++|++
T Consensus 94 ~L~~N~I 100 (175)
T PF14580_consen 94 YLSNNKI 100 (175)
T ss_dssp E-TTS--
T ss_pred ECcCCcC
Confidence 4444444
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=1.3e-10 Score=97.16 Aligned_cols=84 Identities=33% Similarity=0.393 Sum_probs=22.3
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCcccc-CCCCCCcEEEcccCCCCCCC-cccCCCCCCCCe
Q 037919 210 MISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAI-GKLSRLVLLDLSQNCINGPI-PETLSGLQQLQY 287 (397)
Q Consensus 210 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~ 287 (397)
+.+|+.|++++|.++. + +.+..++.|++|++++|.++.. ...+ ..+++|++|++++|++...- -..+..+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 3444444444444442 1 2334444455555555554422 1112 23445555555555554311 123444555555
Q ss_pred eeccCCcCC
Q 037919 288 LIVYHNPIN 296 (397)
Q Consensus 288 L~L~~n~l~ 296 (397)
|++.+|+++
T Consensus 118 L~L~~NPv~ 126 (175)
T PF14580_consen 118 LSLEGNPVC 126 (175)
T ss_dssp EE-TT-GGG
T ss_pred eeccCCccc
Confidence 555555554
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.5e-10 Score=101.71 Aligned_cols=200 Identities=26% Similarity=0.219 Sum_probs=125.9
Q ss_pred hcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeecc-CCcCCCCCccccCCCCCC
Q 037919 183 LGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG-SNKLVGSIPPAIGKLSRL 261 (397)
Q Consensus 183 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L 261 (397)
+.-+.+|+.+.++.+.-. .+.+....-|.|+++.+....++.. +.+-...++.....+ ....+|..-..+..+..|
T Consensus 210 l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~--~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDV--PSLLPETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred hHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccccc--ccccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence 334456666666665433 1222222335666666544333211 112222222222221 122233333445566789
Q ss_pred cEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCC
Q 037919 262 VLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNN 341 (397)
Q Consensus 262 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 341 (397)
+++|+++|.++ .+.+...-.|.++.|++++|.+... ..+..+++|+.|||++|.++ .+..|-..+-+++.|.|++|
T Consensus 287 telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 287 TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhh
Confidence 99999999988 5667777889999999999998764 33777899999999999998 55566567778999999999
Q ss_pred cCCcCCCccccCCCcCCCCEEEccCCcCccc-cCCChHHHhhccceEeccCCcC
Q 037919 342 NLSGTVPPSLGSLPNSMLDQLNLSHNQLSGE-LQFPEEFIERLGERLDVRGNDK 394 (397)
Q Consensus 342 ~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~-~p~~~~~~~~l~~~l~l~~N~~ 394 (397)
.+.. ...+.++=+ |..||+++|+|..- --..++.++=+ +.+.+-+||.
T Consensus 363 ~iE~--LSGL~KLYS--LvnLDl~~N~Ie~ldeV~~IG~LPCL-E~l~L~~NPl 411 (490)
T KOG1259|consen 363 KIET--LSGLRKLYS--LVNLDLSSNQIEELDEVNHIGNLPCL-ETLRLTGNPL 411 (490)
T ss_pred hHhh--hhhhHhhhh--heeccccccchhhHHHhcccccccHH-HHHhhcCCCc
Confidence 8862 245667766 99999999998521 11122333334 5667777774
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=2.2e-09 Score=73.94 Aligned_cols=60 Identities=45% Similarity=0.643 Sum_probs=35.2
Q ss_pred CCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcC
Q 037919 308 NLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQL 369 (397)
Q Consensus 308 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l 369 (397)
+|++|++++|+++...+.+|..+++|++|++++|+++...|..|..+++ |++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~--L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPN--LRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTT--ESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCC--CCEEeCcCCcC
Confidence 4556666666665444455566666666666666665555555666666 66666666653
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.83 E-value=2.7e-10 Score=110.22 Aligned_cols=219 Identities=31% Similarity=0.420 Sum_probs=143.2
Q ss_pred CCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCC
Q 037919 135 GALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLT 214 (397)
Q Consensus 135 ~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 214 (397)
..+..++.+.+..| .+.. +-..+..+.+|+.|++..|.+. .+...+..+++|++|++++|.|+.. ..+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n-~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQN-LIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchh-hhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchh
Confidence 34566666667776 4332 3344677788888888888887 3333366788888888888888733 2356677788
Q ss_pred EEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCc-cccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCC
Q 037919 215 VLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIP-PAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHN 293 (397)
Q Consensus 215 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 293 (397)
.|++.+|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN 218 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence 888888887632 345557788888888888774433 1 45677888888888877632 23333445555577777
Q ss_pred cCCCCCccccCCCC--CCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCc
Q 037919 294 PINSRIPLFLGTLQ--NLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLS 370 (397)
Q Consensus 294 ~l~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~ 370 (397)
.++...+. .... .|+.+++++|.+. .++..+..+.++..+++.+|++...- .+...+. +..+....|.+.
T Consensus 219 ~i~~~~~l--~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~--~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 219 KISKLEGL--NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPK--LSELWLNDNKLA 290 (414)
T ss_pred cceeccCc--ccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccch--HHHhccCcchhc
Confidence 76543221 2222 3788888888887 34355667788888999988887432 2334444 666666777655
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.6e-09 Score=73.53 Aligned_cols=61 Identities=34% Similarity=0.437 Sum_probs=43.0
Q ss_pred CCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcC
Q 037919 283 QQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNL 343 (397)
Q Consensus 283 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 343 (397)
++|++|++++|+++...+..|..+++|++|++++|+++...+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777666666677777777777777777766666777777777777777754
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=3.6e-09 Score=109.79 Aligned_cols=154 Identities=26% Similarity=0.346 Sum_probs=113.4
Q ss_pred cCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCC-CcccCchhhcCCCCCCEEEcccccCCCCCchhhcCC
Q 037919 108 LKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPT-LSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRL 186 (397)
Q Consensus 108 ~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 186 (397)
.+....+...+.++.+. .++.. ...+.|+.|-+..|.. +.......|..++.|++|||++|.--+.+|..++.+
T Consensus 520 ~~~~~~rr~s~~~~~~~---~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE---HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred cchhheeEEEEeccchh---hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 34456677777766654 22222 3556899999998832 444445568889999999999988777999999999
Q ss_pred CCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcC--CCCCccccCCCCCCcEE
Q 037919 187 VNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKL--VGSIPPAIGKLSRLVLL 264 (397)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l--~~~~~~~l~~l~~L~~L 264 (397)
-+|++|+++++.+. .+|..+.++..|.+|++..+.....++.....+++|++|.+..... +...-..+.++.+|+.+
T Consensus 595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 99999999999998 7899999999999999998876555666677799999999865542 22222334555555555
Q ss_pred Ecc
Q 037919 265 DLS 267 (397)
Q Consensus 265 ~l~ 267 (397)
...
T Consensus 674 s~~ 676 (889)
T KOG4658|consen 674 SIT 676 (889)
T ss_pred eee
Confidence 543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=3.1e-10 Score=109.75 Aligned_cols=249 Identities=29% Similarity=0.348 Sum_probs=177.6
Q ss_pred cCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCC
Q 037919 108 LKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLV 187 (397)
Q Consensus 108 ~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 187 (397)
..+..++.+.+..|.+.. ....+..+.+|+.|++..| .+... ...+..+++|++|++++|.++... .+..++
T Consensus 69 ~~l~~l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~~n-~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~ 140 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK----ILNHLSKLKSLEALDLYDN-KIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLT 140 (414)
T ss_pred HHhHhHHhhccchhhhhh----hhcccccccceeeeecccc-chhhc-ccchhhhhcchheecccccccccc--chhhcc
Confidence 356677777788777653 1223578899999999999 66643 222778999999999999997543 356677
Q ss_pred CCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCC-ccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEc
Q 037919 188 NLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVP-PSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDL 266 (397)
Q Consensus 188 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 266 (397)
.|+.|++++|.+.. + ..+..+++|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++
T Consensus 141 ~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 141 LLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSL 215 (414)
T ss_pred chhhheeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhc
Confidence 89999999999972 2 345668999999999999885433 2 57889999999999988633 33444555666688
Q ss_pred ccCCCCCCCcccCCCCCC--CCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCC
Q 037919 267 SQNCINGPIPETLSGLQQ--LQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLS 344 (397)
Q Consensus 267 ~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 344 (397)
..|.++..- .+..... |+.+++++|++... +..+..++.+..|++..|++...- .+...+.+..+....|.+.
T Consensus 216 ~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 216 LDNKISKLE--GLNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccccceecc--CcccchhHHHHHHhcccCccccc-cccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 888776432 2222333 89999999998653 245667789999999999887432 2345567777788888776
Q ss_pred cC---CCcc-ccCCCcCCCCEEEccCCcCccccCCC
Q 037919 345 GT---VPPS-LGSLPNSMLDQLNLSHNQLSGELQFP 376 (397)
Q Consensus 345 ~~---~p~~-~~~l~~~~L~~L~l~~N~l~g~~p~~ 376 (397)
.. .... ....+. +..+.+.+|.+....+..
T Consensus 291 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 324 (414)
T KOG0531|consen 291 LSEAISQEYITSAAPT--LVTLTLELNPIRKISSLD 324 (414)
T ss_pred chhhhhcccccccccc--ccccccccCccccccccc
Confidence 32 1121 456667 889999999888766543
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.62 E-value=8.8e-10 Score=107.32 Aligned_cols=127 Identities=28% Similarity=0.279 Sum_probs=73.5
Q ss_pred CCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChh-hccCCCCCCEEeC
Q 037919 260 RLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPN-FFSSLNTLTALSL 338 (397)
Q Consensus 260 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~L 338 (397)
.|...+.+.|++. .....+.-++.|+.|+|++|+++.. +.+..++.|++|||++|.+. .+|. ....++ |..|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 4555666666665 3344555566667777777776553 25566677777777777765 3343 222333 777777
Q ss_pred CCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCC-hHHHhhccceEeccCCcCCC
Q 037919 339 DNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFP-EEFIERLGERLDVRGNDKLC 396 (397)
Q Consensus 339 s~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~-~~~~~~l~~~l~l~~N~~~C 396 (397)
++|.++. ...+.++.+ |+.||+++|-|.+---.. +..+..+ +.|.|.|||.=|
T Consensus 240 rnN~l~t--L~gie~Lks--L~~LDlsyNll~~hseL~pLwsLs~L-~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALTT--LRGIENLKS--LYGLDLSYNLLSEHSELEPLWSLSSL-IVLWLEGNPLCC 293 (1096)
T ss_pred cccHHHh--hhhHHhhhh--hhccchhHhhhhcchhhhHHHHHHHH-HHHhhcCCcccc
Confidence 7776652 123556666 777777777665433221 1223334 566777777665
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.56 E-value=2.3e-08 Score=86.91 Aligned_cols=244 Identities=17% Similarity=0.179 Sum_probs=110.1
Q ss_pred cCCCCCCEEEcCCCCCCCCC-ccChhhhCCCCCCCEEeCcCCCCCccc----Cch-------hhcCCCCCCEEEcccccC
Q 037919 108 LKLPYLKTLSIFNCFVSSPV-TLSPTLFGALSSLEHLALYSNPTLSGE----IPS-------SLAEIADLRVLSLSQNNL 175 (397)
Q Consensus 108 ~~l~~L~~L~ls~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~l~~~----~p~-------~l~~l~~L~~L~L~~n~l 175 (397)
..+..++.++||+|.+.... .-....+.+-.+|+..+++.- ++|. +++ ++.+||+|+..+||.|.|
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34677777788877766311 000112344556666666542 3332 221 234455555555555555
Q ss_pred CCCCchh----hcCCCCCCEEeeecCCCCCc----cChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcC
Q 037919 176 QGNIPKE----LGRLVNLEQLDLSYNNLSGE----IPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKL 247 (397)
Q Consensus 176 ~~~~~~~----l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (397)
....|+. +..-+.|++|.+++|.+... +..++..+ .. ..-..+-|.|+++....|++
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------a~-------nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------AY-------NKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------HH-------HhhhccCCCceEEEeccchh
Confidence 4433332 22334455555555544311 11000000 00 00112234455555555554
Q ss_pred CCCCc----cccCCCCCCcEEEcccCCCCCC-----CcccCCCCCCCCeeeccCCcCCCCC----ccccCCCCCCCEEEc
Q 037919 248 VGSIP----PAIGKLSRLVLLDLSQNCINGP-----IPETLSGLQQLQYLIVYHNPINSRI----PLFLGTLQNLTSISV 314 (397)
Q Consensus 248 ~~~~~----~~l~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L 314 (397)
..... ..+..-..|+.+.+..|.|... +...+..+.+|+.|+++.|.++-.. ...+...+.|+.|.+
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 32111 1111223555566655555422 1122334556666666666554321 223334455666666
Q ss_pred ccccCCcCChhhc------cCCCCCCEEeCCCCcCCcCCCcc-------ccCCCcCCCCEEEccCCcCc
Q 037919 315 SECGLTGPIPNFF------SSLNTLTALSLDNNNLSGTVPPS-------LGSLPNSMLDQLNLSHNQLS 370 (397)
Q Consensus 315 ~~n~l~~~~~~~~------~~~~~L~~L~Ls~n~l~~~~p~~-------~~~l~~~~L~~L~l~~N~l~ 370 (397)
..|-++.....++ ...|+|..|...+|.+.+.+-.. -.++|- |..|.+.+|+|.
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~--L~~le~ngNr~~ 316 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPL--LVDLERNGNRIK 316 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHH--HHHHHHccCcch
Confidence 6665554332221 12356666666666555422111 124555 666666777665
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=4.1e-10 Score=109.54 Aligned_cols=125 Identities=29% Similarity=0.397 Sum_probs=59.1
Q ss_pred CCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcc-cCCCCCCCCeeecc
Q 037919 213 LTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPE-TLSGLQQLQYLIVY 291 (397)
Q Consensus 213 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~ 291 (397)
|...+.+.|.+. ...+++.-++.|+.|+|++|+++.. +.+..++.|++||++.|++.. +|. ....++ |..|.+.
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhh-heeeeec
Confidence 444445555544 3334444455555555555555533 244555555555555555552 222 122222 5555555
Q ss_pred CCcCCCCCccccCCCCCCCEEEcccccCCcCC-hhhccCCCCCCEEeCCCCcCC
Q 037919 292 HNPINSRIPLFLGTLQNLTSISVSECGLTGPI-PNFFSSLNTLTALSLDNNNLS 344 (397)
Q Consensus 292 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~Ls~n~l~ 344 (397)
+|.++.. ..+.++++|+.||+++|-+.+-- -..++.+..|+.|.|.+|.+-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 5555432 22344555555555555544311 111233445555555555554
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=4e-08 Score=86.57 Aligned_cols=121 Identities=24% Similarity=0.212 Sum_probs=73.0
Q ss_pred ccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcc--cCchhhcCCCCCCEEEcccccCCCC
Q 037919 101 ANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSG--EIPSSLAEIADLRVLSLSQNNLQGN 178 (397)
Q Consensus 101 ~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~ 178 (397)
|..+-.+.....++.+.+.++.+-..+. ...+-.....++.+||.+| .++. .+..-+.++|.|++|+++.|++...
T Consensus 35 g~s~~~v~s~ra~ellvln~~~id~~gd-~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~ 112 (418)
T KOG2982|consen 35 GLSYLGVSSLRALELLVLNGSIIDNEGD-VMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSD 112 (418)
T ss_pred ccceeeeccccchhhheecCCCCCcchh-HHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence 3333344444455566666665543211 1112245677888888888 6654 3455567888888888888887644
Q ss_pred CchhhcCCCCCCEEeeecCCCCCc-cChhccCCCCCCEEEccCCCC
Q 037919 179 IPKELGRLVNLEQLDLSYNNLSGE-IPDEIGGMISLTVLDLSWNGL 223 (397)
Q Consensus 179 ~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l 223 (397)
|-..-....+|++|-|.+..+... ....+..+|.+++|+++.|.+
T Consensus 113 I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 113 IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 322213556788888877776532 334456777888888877743
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.48 E-value=6.4e-08 Score=84.25 Aligned_cols=168 Identities=19% Similarity=0.160 Sum_probs=110.1
Q ss_pred ccCCCCCCEEEccCCCCCCCCCcc----ccCCccCceeeccCCcCCCCCcc-------------ccCCCCCCcEEEcccC
Q 037919 207 IGGMISLTVLDLSWNGLQGQVPPS----LGTLQLLQKIDLGSNKLVGSIPP-------------AIGKLSRLVLLDLSQN 269 (397)
Q Consensus 207 l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~-------------~l~~l~~L~~L~l~~n 269 (397)
+.+||+|+..+++.|.+....|+. +++.+.|++|.+++|.+...... ....-+.|+.+....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 455666666666666665554443 34556677777777665422111 1234578999999999
Q ss_pred CCCCCC----cccCCCCCCCCeeeccCCcCCCCCcc-----ccCCCCCCCEEEcccccCCcC----ChhhccCCCCCCEE
Q 037919 270 CINGPI----PETLSGLQQLQYLIVYHNPINSRIPL-----FLGTLQNLTSISVSECGLTGP----IPNFFSSLNTLTAL 336 (397)
Q Consensus 270 ~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L 336 (397)
++.... ...+..-.+|+++.+..|.|...... .+..+++|+.|||+.|.++-. +...+..++.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 987321 12233336899999999988543211 234579999999999998743 33455677889999
Q ss_pred eCCCCcCCcCCCccc------cCCCcCCCCEEEccCCcCccccCCC
Q 037919 337 SLDNNNLSGTVPPSL------GSLPNSMLDQLNLSHNQLSGELQFP 376 (397)
Q Consensus 337 ~Ls~n~l~~~~p~~~------~~l~~~~L~~L~l~~N~l~g~~p~~ 376 (397)
.+..|-++..-..++ ...|+ |..|-..+|...|.+-..
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~--l~~L~~~Yne~~~~~i~~ 291 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPN--LMPLPGDYNERRGGIILD 291 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCC--ccccccchhhhcCceeee
Confidence 999998875433322 24577 899999999887665544
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=4.1e-09 Score=92.71 Aligned_cols=177 Identities=20% Similarity=0.176 Sum_probs=103.3
Q ss_pred CCCCEEEcccccCCCC-CchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCC-CCCC-CCccccCCccCce
Q 037919 163 ADLRVLSLSQNNLQGN-IPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG-LQGQ-VPPSLGTLQLLQK 239 (397)
Q Consensus 163 ~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~ 239 (397)
+.|++|||+...++.. +...+..+.+|+.|.+.++++.+.+...+.+..+|+.|+++.+. ++.. ..-.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3466666666655421 22234456667777777777666666666666677777776553 2211 1123456677777
Q ss_pred eeccCCcCCCCCcc-ccCC-CCCCcEEEcccCCCC---CCCcccCCCCCCCCeeeccCCc-CCCCCccccCCCCCCCEEE
Q 037919 240 IDLGSNKLVGSIPP-AIGK-LSRLVLLDLSQNCIN---GPIPETLSGLQQLQYLIVYHNP-INSRIPLFLGTLQNLTSIS 313 (397)
Q Consensus 240 L~l~~n~l~~~~~~-~l~~-l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~ 313 (397)
|+++.|.+....-. .+.+ -++|+.|+++++.-. ..+..-..++++|.+|||++|. ++......+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 77776665432211 1111 246677777765321 1222233567888888888765 3444445566778888888
Q ss_pred cccccCCcCChhh---ccCCCCCCEEeCCCC
Q 037919 314 VSECGLTGPIPNF---FSSLNTLTALSLDNN 341 (397)
Q Consensus 314 L~~n~l~~~~~~~---~~~~~~L~~L~Ls~n 341 (397)
++.|-. .+|.. +...|+|.+||+-++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 887753 45543 356688888888775
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=5.7e-09 Score=91.80 Aligned_cols=177 Identities=21% Similarity=0.187 Sum_probs=121.6
Q ss_pred CCCCEEeeecCCCCC-ccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCc-CCCCC-ccccCCCCCCcE
Q 037919 187 VNLEQLDLSYNNLSG-EIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNK-LVGSI-PPAIGKLSRLVL 263 (397)
Q Consensus 187 ~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~ 263 (397)
+.|++|||+...++. ..-..+..+.+|+.|.+.++++.+.+...++.-..|+.|+++.+. ++... .-.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 458899999888772 233346778889999999999888777788888889999998653 22111 123567888999
Q ss_pred EEcccCCCCCCCcc-cCC-CCCCCCeeeccCCcCC---CCCccccCCCCCCCEEEcccc-cCCcCChhhccCCCCCCEEe
Q 037919 264 LDLSQNCINGPIPE-TLS-GLQQLQYLIVYHNPIN---SRIPLFLGTLQNLTSISVSEC-GLTGPIPNFFSSLNTLTALS 337 (397)
Q Consensus 264 L~l~~n~l~~~~~~-~l~-~l~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~ 337 (397)
|++++|.+....-. ... --++|+.|+++|+.-. ..+..-...+++|.+|||+.| .++......|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999877643211 111 1257888888887521 112223356889999999986 45655566777888999998
Q ss_pred CCCCcCCcCCCcc---ccCCCcCCCCEEEccCC
Q 037919 338 LDNNNLSGTVPPS---LGSLPNSMLDQLNLSHN 367 (397)
Q Consensus 338 Ls~n~l~~~~p~~---~~~l~~~~L~~L~l~~N 367 (397)
++.|-. .+|.. +...|. +.+|++.++
T Consensus 345 lsRCY~--i~p~~~~~l~s~ps--l~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPS--LVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcc--eEEEEeccc
Confidence 888733 34543 566777 888887765
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=2.3e-07 Score=81.86 Aligned_cols=227 Identities=20% Similarity=0.227 Sum_probs=134.3
Q ss_pred CCCEEeCcCCCCCcccC-chhh-cCCCCCCEEEcccccCCC--CCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCC
Q 037919 139 SLEHLALYSNPTLSGEI-PSSL-AEIADLRVLSLSQNNLQG--NIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLT 214 (397)
Q Consensus 139 ~L~~L~l~~n~~l~~~~-p~~l-~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 214 (397)
.++.+.+.++ .+...- ...| ..++.++.+||.+|.++. .+...+.++|.|++|+++.|++...+...-....+|+
T Consensus 46 a~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 4445555555 332211 1122 356889999999999874 4555677899999999999998744333224556889
Q ss_pred EEEccCCCCCCC-CCccccCCccCceeeccCCcCCCCCc--cccCC-CCCCcEEEcccCCCCC--CCcccCCCCCCCCee
Q 037919 215 VLDLSWNGLQGQ-VPPSLGTLQLLQKIDLGSNKLVGSIP--PAIGK-LSRLVLLDLSQNCING--PIPETLSGLQQLQYL 288 (397)
Q Consensus 215 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~l~~-l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L 288 (397)
+|-+.+..+.-. ....+..+|+++.|.++.|++..... ..... -+.++++....|.... ..-..-..++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 999988776532 33456778888999888885431100 00111 1233444443332110 000011234677777
Q ss_pred eccCCcCCCCC-ccccCCCCCCCEEEcccccCCc-CChhhccCCCCCCEEeCCCCcCCcCCC----c--cccCCCcCCCC
Q 037919 289 IVYHNPINSRI-PLFLGTLQNLTSISVSECGLTG-PIPNFFSSLNTLTALSLDNNNLSGTVP----P--SLGSLPNSMLD 360 (397)
Q Consensus 289 ~L~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~p----~--~~~~l~~~~L~ 360 (397)
-+..|.+.... -+.....+.+..|+|+.++|.. ..-+.+..++.|+.|.+++|.+...+- . .++++++ ++
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~--v~ 282 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK--VQ 282 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc--eE
Confidence 77777664322 1234455677788888888753 223557788899999999988764322 1 2567777 77
Q ss_pred EEEccCCcCc
Q 037919 361 QLNLSHNQLS 370 (397)
Q Consensus 361 ~L~l~~N~l~ 370 (397)
.|+=+ +++
T Consensus 283 vLNGs--kIs 290 (418)
T KOG2982|consen 283 VLNGS--KIS 290 (418)
T ss_pred EecCc--ccc
Confidence 76533 554
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=9.4e-08 Score=74.79 Aligned_cols=85 Identities=28% Similarity=0.455 Sum_probs=50.5
Q ss_pred CCCCCCEEEcccccCCCCCchhhcC-CCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCce
Q 037919 161 EIADLRVLSLSQNNLQGNIPKELGR-LVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQK 239 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 239 (397)
....|+..+|++|.+. .+|..|.. ++.++.|++++|++. .+|..+..++.|+.|+++.|.+. ..|+.+..+.++..
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 3345555566666665 44444433 346666667666666 55666666666666666666665 44555555666666
Q ss_pred eeccCCcCC
Q 037919 240 IDLGSNKLV 248 (397)
Q Consensus 240 L~l~~n~l~ 248 (397)
|+..+|...
T Consensus 128 Lds~~na~~ 136 (177)
T KOG4579|consen 128 LDSPENARA 136 (177)
T ss_pred hcCCCCccc
Confidence 666555544
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.16 E-value=5.7e-08 Score=75.99 Aligned_cols=136 Identities=21% Similarity=0.192 Sum_probs=90.9
Q ss_pred CceeeccCCcCCCCCccc---cCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEE
Q 037919 237 LQKIDLGSNKLVGSIPPA---IGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSIS 313 (397)
Q Consensus 237 L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 313 (397)
+-.++++.|++- .+++. +.....|+..++++|.+....+..-...+.++.+++++|.+++ +|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcc
Confidence 455677777653 33333 3344567777888888884444444456688888888888866 566688888888888
Q ss_pred cccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChH
Q 037919 314 VSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEE 378 (397)
Q Consensus 314 L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~ 378 (397)
+++|.+. ..|..+..+.++.+|+..+|.+. ++|..+..-.. .-..++.++.+.|.-+....
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~--~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSL--PALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhcccc--HHHHHhcCCcccccCccccc
Confidence 8888887 56666666888888888888776 55544322222 33345566777777776554
No 53
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.07 E-value=5.8e-06 Score=52.12 Aligned_cols=36 Identities=31% Similarity=0.859 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCC-----CCCCCCC-CCCCCCCCccceEcC
Q 037919 34 EDELLGLFEVMSSLIED-----PGWGRAH-PEPCTETPWPGVECE 72 (397)
Q Consensus 34 ~~~~~~l~~~~~~~~~~-----~~w~~~~-~~~c~~~~w~gv~C~ 72 (397)
.+|++||++||+++..+ .+|.... .++|. |.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~---W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCS---WSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCC---STTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCee---eccEEeC
Confidence 57899999999999853 4798763 58998 9999995
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1.2e-05 Score=50.81 Aligned_cols=36 Identities=36% Similarity=0.536 Sum_probs=18.2
Q ss_pred CCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCC
Q 037919 308 NLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLS 344 (397)
Q Consensus 308 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 344 (397)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=5.1e-05 Score=71.64 Aligned_cols=137 Identities=16% Similarity=0.196 Sum_probs=77.5
Q ss_pred hhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCC-CCCCCCCccccCCcc
Q 037919 158 SLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWN-GLQGQVPPSLGTLQL 236 (397)
Q Consensus 158 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~ 236 (397)
.+..+.++++|++++|.+. .+|. + -++|++|.++++.--..+|..+ .++|+.|++++| .+. .+|. +
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------c
Confidence 3556788999999999776 5552 2 2369999998754433566544 257888888887 343 3443 4
Q ss_pred CceeeccCCcCCCCCccccCC-CCCCcEEEcccCCCC--CCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEE
Q 037919 237 LQKIDLGSNKLVGSIPPAIGK-LSRLVLLDLSQNCIN--GPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSIS 313 (397)
Q Consensus 237 L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 313 (397)
|+.|++..+.... +.. .++|+.|.+.+++.. ..++..+ .++|++|++++|.... .|..+. .+|+.|+
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ 183 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII-LPEKLP--ESLQSIT 183 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCccc-Cccccc--ccCcEEE
Confidence 6667776554321 112 235666666432211 0111111 1467777777766432 232222 5677777
Q ss_pred cccc
Q 037919 314 VSEC 317 (397)
Q Consensus 314 L~~n 317 (397)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7655
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=5.7e-06 Score=84.20 Aligned_cols=108 Identities=24% Similarity=0.334 Sum_probs=61.1
Q ss_pred CCCCEEeCcCCCCCcccCchhhc-CCCCCCEEEcccccCCC-CCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCE
Q 037919 138 SSLEHLALYSNPTLSGEIPSSLA-EIADLRVLSLSQNNLQG-NIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTV 215 (397)
Q Consensus 138 ~~L~~L~l~~n~~l~~~~p~~l~-~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 215 (397)
.+|++||+++...+...-|..++ .+|.|+.|.+++-.+.. .+..-..++|+|..||+++++++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46777777776555444444444 35777777777655532 2233345667777777777766522 45666666666
Q ss_pred EEccCCCCCC-CCCccccCCccCceeeccCCcC
Q 037919 216 LDLSWNGLQG-QVPPSLGTLQLLQKIDLGSNKL 247 (397)
Q Consensus 216 L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l 247 (397)
|.+.+=.+.. ..-..+.++++|+.||+|....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 6665544432 1112344566666666665443
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.84 E-value=6.6e-07 Score=82.50 Aligned_cols=258 Identities=19% Similarity=0.128 Sum_probs=137.4
Q ss_pred cccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCch-hhcCCCCCCEEEccccc-CCCC-Cchh
Q 037919 106 ALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPS-SLAEIADLRVLSLSQNN-LQGN-IPKE 182 (397)
Q Consensus 106 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~-~l~~l~~L~~L~L~~n~-l~~~-~~~~ 182 (397)
...++|++++|.+.+|..... ..-..+-..+++|++|++..|..++..... ....+++|++|+++++. +++. +...
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd-~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITD-SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred HhhhCCchhhhhhhcceeccH-HHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 346788888888887753321 111222356788888888887666655444 33567888888888775 3321 1122
Q ss_pred hcCCCCCCEEeeecCCCCCccChhc----cCCCCCCEEEccCCC-CCCCC-CccccCCccCceeeccCCcCCCCCc--cc
Q 037919 183 LGRLVNLEQLDLSYNNLSGEIPDEI----GGMISLTVLDLSWNG-LQGQV-PPSLGTLQLLQKIDLGSNKLVGSIP--PA 254 (397)
Q Consensus 183 l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~ 254 (397)
..++..++.+.+.++.=. -...+ ..++.+.++++..|. +++.. -..-..+..|+.|+.+++...+..+ .-
T Consensus 238 ~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL 315 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL 315 (483)
T ss_pred hccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH
Confidence 334455666655544211 01111 233445555554442 22211 1112345677777777665422211 11
Q ss_pred cCCCCCCcEEEcccCCC-CCCCccc-CCCCCCCCeeeccCCcCCC--CCccccCCCCCCCEEEcccccC-CcCC----hh
Q 037919 255 IGKLSRLVLLDLSQNCI-NGPIPET-LSGLQQLQYLIVYHNPINS--RIPLFLGTLQNLTSISVSECGL-TGPI----PN 325 (397)
Q Consensus 255 l~~l~~L~~L~l~~n~l-~~~~~~~-l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l-~~~~----~~ 325 (397)
-.+..+|+.+.++.++. +..-... -.+++.|+.+++..+.... .+...-.+++.|+.+.+++|.. ++.. ..
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 23456777787777653 2211111 2356677777777665422 1222334567778777777753 2221 11
Q ss_pred hccCCCCCCEEeCCCCcCC-cCCCccccCCCcCCCCEEEccCCc
Q 037919 326 FFSSLNTLTALSLDNNNLS-GTVPPSLGSLPNSMLDQLNLSHNQ 368 (397)
Q Consensus 326 ~~~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~~~L~~L~l~~N~ 368 (397)
.-..+..|..+.|+++... ....+.+..++. |+.+++..++
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~--Leri~l~~~q 437 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRN--LERIELIDCQ 437 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcc--cceeeeechh
Confidence 1234566777777777443 334445566666 7777777764
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.5e-05 Score=50.32 Aligned_cols=38 Identities=47% Similarity=0.836 Sum_probs=32.7
Q ss_pred CCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCcc
Q 037919 331 NTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG 371 (397)
Q Consensus 331 ~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g 371 (397)
++|++|++++|+|+ .+|..+.++++ |+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~--L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPN--LETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTT--SSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCC--CCEEEecCCCCCC
Confidence 57999999999999 67777999999 9999999999983
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=0.0001 Score=69.71 Aligned_cols=138 Identities=15% Similarity=0.224 Sum_probs=77.8
Q ss_pred cccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcC
Q 037919 106 ALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGR 185 (397)
Q Consensus 106 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 185 (397)
.+..++++++|++++|.+. .+| .-.++|++|.+++|..+ ..+|..+. ++|++|++++|.....+|.
T Consensus 47 r~~~~~~l~~L~Is~c~L~---sLP----~LP~sLtsL~Lsnc~nL-tsLP~~LP--~nLe~L~Ls~Cs~L~sLP~---- 112 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE---SLP----VLPNELTEITIENCNNL-TTLPGSIP--EGLEKLTVCHCPEISGLPE---- 112 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc---ccC----CCCCCCcEEEccCCCCc-ccCCchhh--hhhhheEccCccccccccc----
Confidence 3556788999999988766 344 12246899999887554 34454442 5788888888732224443
Q ss_pred CCCCCEEeeecCCCCCccChhccCCC-CCCEEEccCCCCC--CCCCccccCCccCceeeccCCcCCCCCccccCCCCCCc
Q 037919 186 LVNLEQLDLSYNNLSGEIPDEIGGMI-SLTVLDLSWNGLQ--GQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLV 262 (397)
Q Consensus 186 l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 262 (397)
+|+.|++..+... . +..+| +|+.|.+.++... ...+.. -.++|++|++++|... ..|..+ ..+|+
T Consensus 113 --sLe~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L--P~SLk 180 (426)
T PRK15386 113 --SVRSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL--PESLQ 180 (426)
T ss_pred --ccceEEeCCCCCc-c----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc--cccCc
Confidence 4677777665543 1 22222 4566666432211 011111 1146777777776654 233322 24677
Q ss_pred EEEcccC
Q 037919 263 LLDLSQN 269 (397)
Q Consensus 263 ~L~l~~n 269 (397)
.|.++.+
T Consensus 181 ~L~ls~n 187 (426)
T PRK15386 181 SITLHIE 187 (426)
T ss_pred EEEeccc
Confidence 7777655
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=1.6e-05 Score=80.98 Aligned_cols=136 Identities=20% Similarity=0.186 Sum_probs=91.1
Q ss_pred CCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCC
Q 037919 111 PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190 (397)
Q Consensus 111 ~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 190 (397)
.+|++|++++...... ..+...-..+|.|++|.+.+-....+.......++++|..||+|+++++.. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~-~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSN-GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhc-cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 5788899887643321 344444567899999999876222333444556889999999999988733 6788889999
Q ss_pred EEeeecCCCCC-ccChhccCCCCCCEEEccCCCCCCCC--C----ccccCCccCceeeccCCcCCC
Q 037919 191 QLDLSYNNLSG-EIPDEIGGMISLTVLDLSWNGLQGQV--P----PSLGTLQLLQKIDLGSNKLVG 249 (397)
Q Consensus 191 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~l~~ 249 (397)
.|.+.+-.+.. ..-..+.++++|+.||++........ . +.-..+|+|+.||.+++.+.+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 98887777652 22335678899999999876654221 1 111246677777777666544
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=7.1e-05 Score=62.82 Aligned_cols=39 Identities=28% Similarity=0.221 Sum_probs=15.9
Q ss_pred CCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCC
Q 037919 185 RLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGL 223 (397)
Q Consensus 185 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 223 (397)
.++.|.+|.+++|.|+...|..-..+|+|+.|.+.+|.+
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 344444444444444433333223333444444444443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00014 Score=61.07 Aligned_cols=65 Identities=20% Similarity=0.116 Sum_probs=26.4
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCC-ccccCCCCCCcEEEcccCCC
Q 037919 207 IGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSI-PPAIGKLSRLVLLDLSQNCI 271 (397)
Q Consensus 207 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l 271 (397)
+..+++|.+|.+.+|+++...|.--.-+++|+.|.+.+|++.... -..+..+++|++|.+-+|..
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence 334444444444444444333322223344444444444443110 01233444444444444443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.38 E-value=6.7e-05 Score=65.53 Aligned_cols=113 Identities=26% Similarity=0.273 Sum_probs=59.8
Q ss_pred ccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecC--CCCCccChhccCCCCCCEEEccCCCCCC-CCCc
Q 037919 153 GEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYN--NLSGEIPDEIGGMISLTVLDLSWNGLQG-QVPP 229 (397)
Q Consensus 153 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~ 229 (397)
|.+..-...+..|+.|++.+..++. -..+..+++|++|.++.| ...+.++-...++|+|+++++++|++.. ..-.
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~ 110 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR 110 (260)
T ss_pred CCcccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc
Confidence 3344444445556666666655542 123455677777777777 4444444444556777777777777652 0112
Q ss_pred cccCCccCceeeccCCcCCCCC---ccccCCCCCCcEEEcc
Q 037919 230 SLGTLQLLQKIDLGSNKLVGSI---PPAIGKLSRLVLLDLS 267 (397)
Q Consensus 230 ~l~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~ 267 (397)
.+..+.+|..|++.+|..+..- -..|.-+++|++|+-.
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 2344455666666666544311 1233445566665543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.37 E-value=0.00039 Score=55.37 Aligned_cols=13 Identities=8% Similarity=0.220 Sum_probs=4.2
Q ss_pred ccCCCCCCEEEcC
Q 037919 107 LLKLPYLKTLSIF 119 (397)
Q Consensus 107 l~~l~~L~~L~ls 119 (397)
|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 3344444444443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.23 E-value=0.0009 Score=53.23 Aligned_cols=9 Identities=11% Similarity=0.202 Sum_probs=3.0
Q ss_pred CCCCCeeec
Q 037919 282 LQQLQYLIV 290 (397)
Q Consensus 282 l~~L~~L~L 290 (397)
+++|+.+++
T Consensus 80 ~~~l~~i~~ 88 (129)
T PF13306_consen 80 CTNLKNIDI 88 (129)
T ss_dssp -TTECEEEE
T ss_pred ccccccccc
Confidence 333333333
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.18 E-value=1.4e-05 Score=73.97 Aligned_cols=257 Identities=23% Similarity=0.181 Sum_probs=159.0
Q ss_pred CCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhh-cCCCCCCEEEccccc-CCCCCch-hhcCCC
Q 037919 111 PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSL-AEIADLRVLSLSQNN-LQGNIPK-ELGRLV 187 (397)
Q Consensus 111 ~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l-~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~ 187 (397)
..|+.|.++++.-.+...+ ..+-.++|++++|++.+|..++...-..+ ..+++|++|++..|. ++...-. -...++
T Consensus 138 g~lk~LSlrG~r~v~~ssl-rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSL-RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcchh-hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 4788999998865432111 23346899999999999976666544444 468999999999854 4432222 234689
Q ss_pred CCCEEeeecCC-CCCc-cChhccCCCCCCEEEccCCCCCCC--CCccccCCccCceeeccCCc-CCCCCccc-cCCCCCC
Q 037919 188 NLEQLDLSYNN-LSGE-IPDEIGGMISLTVLDLSWNGLQGQ--VPPSLGTLQLLQKIDLGSNK-LVGSIPPA-IGKLSRL 261 (397)
Q Consensus 188 ~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~-l~~~~~~~-l~~l~~L 261 (397)
+|++|+++.+. +++. +-....++..++.+.+.+|.-.+. +-..-+.+..+.++++..+. +++.---. -..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 99999999875 4432 222345666777777766532110 01111345566777765553 33221111 1246788
Q ss_pred cEEEcccCCCCCCCc--ccCCCCCCCCeeeccCCc-CCCCCcccc-CCCCCCCEEEcccccCCc--CChhhccCCCCCCE
Q 037919 262 VLLDLSQNCINGPIP--ETLSGLQQLQYLIVYHNP-INSRIPLFL-GTLQNLTSISVSECGLTG--PIPNFFSSLNTLTA 335 (397)
Q Consensus 262 ~~L~l~~n~l~~~~~--~~l~~l~~L~~L~L~~n~-l~~~~~~~~-~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~ 335 (397)
+.++.+++...+..+ .--.+..+|+.+-+++++ ++......+ .+++.|+.+++..+.... .+...-.+++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 999998875433221 223567899999999987 333222223 467999999999886432 23333367899999
Q ss_pred EeCCCCcCC-cCC----CccccCCCcCCCCEEEccCCcCc
Q 037919 336 LSLDNNNLS-GTV----PPSLGSLPNSMLDQLNLSHNQLS 370 (397)
Q Consensus 336 L~Ls~n~l~-~~~----p~~~~~l~~~~L~~L~l~~N~l~ 370 (397)
+.++++... +.- ...-..... ++.+.|++++.+
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~--l~~lEL~n~p~i 414 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEG--LEVLELDNCPLI 414 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccc--cceeeecCCCCc
Confidence 999988543 221 111233444 899999999764
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00024 Score=62.14 Aligned_cols=93 Identities=23% Similarity=0.334 Sum_probs=53.0
Q ss_pred cChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCC--cCCCCCccccCCCCCCcEEEcccCCCCCC-CcccC
Q 037919 203 IPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSN--KLVGSIPPAIGKLSRLVLLDLSQNCINGP-IPETL 279 (397)
Q Consensus 203 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l 279 (397)
+....-.+.+|+.+.+.+..++.. ..+..+++|++|.++.| +..+.++.....+++|+++++++|++... --..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 333334455666666666655522 24556677777777777 44444444445557777777777776631 01223
Q ss_pred CCCCCCCeeeccCCcCCC
Q 037919 280 SGLQQLQYLIVYHNPINS 297 (397)
Q Consensus 280 ~~l~~L~~L~L~~n~l~~ 297 (397)
..+++|..|++.+|..+.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhcchhhhhcccCCccc
Confidence 445566666766665544
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.93 E-value=9.9e-05 Score=72.87 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=9.8
Q ss_pred CCCCCCCCeeeccCCc
Q 037919 279 LSGLQQLQYLIVYHNP 294 (397)
Q Consensus 279 l~~l~~L~~L~L~~n~ 294 (397)
+..+++++.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 4456666666666655
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=0.00029 Score=69.52 Aligned_cols=225 Identities=23% Similarity=0.149 Sum_probs=120.5
Q ss_pred cCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccC----chhhcCCCCCCEEEccccc-CCCCCchh
Q 037919 108 LKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEI----PSSLAEIADLRVLSLSQNN-LQGNIPKE 182 (397)
Q Consensus 108 ~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~----p~~l~~l~~L~~L~L~~n~-l~~~~~~~ 182 (397)
..+++|+.+.+..+....... -......++.|+.|+++++....... ......+++|+.|+++++. +++..-..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hhCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 347888888888775332101 12335678889999888731222111 2234566888888888887 55444444
Q ss_pred hcC-CCCCCEEeeecCC-CCCc-cChhccCCCCCCEEEccCCCCCCC--CCccccCCccCceeeccCCc-----------
Q 037919 183 LGR-LVNLEQLDLSYNN-LSGE-IPDEIGGMISLTVLDLSWNGLQGQ--VPPSLGTLQLLQKIDLGSNK----------- 246 (397)
Q Consensus 183 l~~-l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~----------- 246 (397)
+.. +++|++|.+.++. ++.. +-.....+++|++|+++++..... +......+++++.|.+....
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~ 343 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS 343 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH
Confidence 443 7888888877666 4422 223345678889998887765311 12223345555554432221
Q ss_pred ---CC---CCCccccCCCCCCcEEEcccCCCCCCC-cccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccC
Q 037919 247 ---LV---GSIPPAIGKLSRLVLLDLSQNCINGPI-PETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGL 319 (397)
Q Consensus 247 ---l~---~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 319 (397)
.. .........+++++.+.+..+...... ...+.+++.|. ..+.. .......++.|+++.+..
T Consensus 344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~~~~~~l~~L~l~~~~~ 413 (482)
T KOG1947|consen 344 GLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RLCRSDSLRVLNLSDCRL 413 (482)
T ss_pred HhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------HhccCCccceEecccCcc
Confidence 10 111123456677777777777633222 23445555552 21111 111112277888887764
Q ss_pred C-cCChhhccC-CCCCCEEeCCCCcC
Q 037919 320 T-GPIPNFFSS-LNTLTALSLDNNNL 343 (397)
Q Consensus 320 ~-~~~~~~~~~-~~~L~~L~Ls~n~l 343 (397)
. ...-..... +.+++.+++++...
T Consensus 414 ~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 414 VTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred ccccchHHHhhhhhccccCCccCccc
Confidence 3 222122222 55667777776544
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=7e-05 Score=65.92 Aligned_cols=98 Identities=26% Similarity=0.304 Sum_probs=53.1
Q ss_pred CCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCC-chhhcCCCCCC
Q 037919 112 YLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNI-PKELGRLVNLE 190 (397)
Q Consensus 112 ~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~ 190 (397)
+.+.|+.-+|.+.+ | .+...|+.|++|.|+-| .++.. ..+..|++|++|+|..|.|...- ...+.++++|+
T Consensus 20 ~vkKLNcwg~~L~D---I--sic~kMp~lEVLsLSvN-kIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD---I--SICEKMPLLEVLSLSVN-KISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HhhhhcccCCCccH---H--HHHHhcccceeEEeecc-ccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 34444444554442 1 22456666666666666 44322 23556666666666666664211 12345667777
Q ss_pred EEeeecCCCCCccCh-----hccCCCCCCEEE
Q 037919 191 QLDLSYNNLSGEIPD-----EIGGMISLTVLD 217 (397)
Q Consensus 191 ~L~L~~n~l~~~~~~-----~l~~l~~L~~L~ 217 (397)
.|.|..|.-.|.-+. .+..+|+|++||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777777666554433 345566666665
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.00013 Score=64.27 Aligned_cols=100 Identities=26% Similarity=0.315 Sum_probs=57.7
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCC-cccCCCCCCCCee
Q 037919 210 MISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPI-PETLSGLQQLQYL 288 (397)
Q Consensus 210 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L 288 (397)
+.+.++|+..++++.+. .....++.|+.|.|+-|.++.. ..+..+++|++|.|..|.|...- -.-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556677777766532 2334666777777777776533 34556677777777777666321 1235566777777
Q ss_pred eccCCcCCCCCcc-----ccCCCCCCCEEE
Q 037919 289 IVYHNPINSRIPL-----FLGTLQNLTSIS 313 (397)
Q Consensus 289 ~L~~n~l~~~~~~-----~~~~~~~L~~L~ 313 (397)
.|..|.-.+..+. .+..+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7776665543332 233445555554
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.55 E-value=6.2e-05 Score=73.45 Aligned_cols=182 Identities=29% Similarity=0.300 Sum_probs=101.6
Q ss_pred CCCEEEcccccCCCCCch----hhcCCCCCCEEeeecCCCCCccCh----hccCC-CCCCEEEccCCCCCCC----CCcc
Q 037919 164 DLRVLSLSQNNLQGNIPK----ELGRLVNLEQLDLSYNNLSGEIPD----EIGGM-ISLTVLDLSWNGLQGQ----VPPS 230 (397)
Q Consensus 164 ~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l-~~L~~L~l~~n~l~~~----~~~~ 230 (397)
.+..+.|.+|.+...... .+...+.|+.|++++|.+.+..-. .+... ..+++|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 477888888888754333 355678888889998888733222 12222 4566777777776643 3344
Q ss_pred ccCCccCceeeccCCcCCC----CCccccC----CCCCCcEEEcccCCCCCC----CcccCCCCCC-CCeeeccCCcCCC
Q 037919 231 LGTLQLLQKIDLGSNKLVG----SIPPAIG----KLSRLVLLDLSQNCINGP----IPETLSGLQQ-LQYLIVYHNPINS 297 (397)
Q Consensus 231 l~~l~~L~~L~l~~n~l~~----~~~~~l~----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~-L~~L~L~~n~l~~ 297 (397)
+.....++.++++.|.+.. .++..+. ...++++|.+.+|.++.. +...+...+. +.++++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5556677777777776631 1112222 345666666666665532 1122333344 5556666666643
Q ss_pred CCc----cccCCC-CCCCEEEcccccCCcCC----hhhccCCCCCCEEeCCCCcCCc
Q 037919 298 RIP----LFLGTL-QNLTSISVSECGLTGPI----PNFFSSLNTLTALSLDNNNLSG 345 (397)
Q Consensus 298 ~~~----~~~~~~-~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~ 345 (397)
... ..+..+ ..+++++++.|.++... ...+..++.++.+.+++|.+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 311 122223 45566666666665432 2334455566666666666653
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.38 E-value=0.0049 Score=32.36 Aligned_cols=6 Identities=17% Similarity=0.263 Sum_probs=2.1
Q ss_pred EEcccc
Q 037919 312 ISVSEC 317 (397)
Q Consensus 312 L~L~~n 317 (397)
|++++|
T Consensus 5 Ldls~n 10 (22)
T PF00560_consen 5 LDLSGN 10 (22)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 333333
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.16 E-value=0.00018 Score=70.33 Aligned_cols=204 Identities=27% Similarity=0.263 Sum_probs=135.8
Q ss_pred CCCEEeCcCCCCCcccC----chhhcCCCCCCEEEcccccCCCCCchh----hcCC-CCCCEEeeecCCCCCc----cCh
Q 037919 139 SLEHLALYSNPTLSGEI----PSSLAEIADLRVLSLSQNNLQGNIPKE----LGRL-VNLEQLDLSYNNLSGE----IPD 205 (397)
Q Consensus 139 ~L~~L~l~~n~~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~----~~~ 205 (397)
.+..+.|.+| .+.... -..+..++.|+.|++++|.+.+..... +... ..+++|++..|.++.. +.+
T Consensus 88 ~l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 88 SLLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hHHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 3888999998 555433 345667899999999999987433222 2222 4577788888887743 445
Q ss_pred hccCCCCCCEEEccCCCCCC----CCCcccc----CCccCceeeccCCcCCCCC----ccccCCCCC-CcEEEcccCCCC
Q 037919 206 EIGGMISLTVLDLSWNGLQG----QVPPSLG----TLQLLQKIDLGSNKLVGSI----PPAIGKLSR-LVLLDLSQNCIN 272 (397)
Q Consensus 206 ~l~~l~~L~~L~l~~n~l~~----~~~~~l~----~l~~L~~L~l~~n~l~~~~----~~~l~~l~~-L~~L~l~~n~l~ 272 (397)
.+.....++.++++.|.+.. .++..+. ...++++|.+.++.++... ...+...+. +..+++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 56667889999999998742 1223333 4678999999998876321 133445555 677999999887
Q ss_pred CC----CcccCCCC-CCCCeeeccCCcCCCCCc----cccCCCCCCCEEEcccccCCcCChh----hccCCCCCCEEeCC
Q 037919 273 GP----IPETLSGL-QQLQYLIVYHNPINSRIP----LFLGTLQNLTSISVSECGLTGPIPN----FFSSLNTLTALSLD 339 (397)
Q Consensus 273 ~~----~~~~l~~l-~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~~~~L~~L~Ls 339 (397)
+. ....+... ..++.++++.|.+++... ..+..++.++.+.+++|.+.+.... .......+..+-+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~ 326 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLG 326 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcc
Confidence 53 22344445 678999999999976443 3456678999999999998764322 22333455566666
Q ss_pred CCcC
Q 037919 340 NNNL 343 (397)
Q Consensus 340 ~n~l 343 (397)
++..
T Consensus 327 ~~~~ 330 (478)
T KOG4308|consen 327 GTGK 330 (478)
T ss_pred ccCc
Confidence 5544
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.14 E-value=0.01 Score=31.17 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=13.4
Q ss_pred CCCEEeCCCCcCCcCCCccccC
Q 037919 332 TLTALSLDNNNLSGTVPPSLGS 353 (397)
Q Consensus 332 ~L~~L~Ls~n~l~~~~p~~~~~ 353 (397)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4667777777777 56655543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.12 E-value=0.023 Score=48.09 Aligned_cols=84 Identities=24% Similarity=0.282 Sum_probs=47.9
Q ss_pred ccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhh-CCCCCCCEEeCcCCCCCcccCchhh
Q 037919 81 FHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLF-GALSSLEHLALYSNPTLSGEIPSSL 159 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~p~~l 159 (397)
..|..++-++ +.+...--..+.+++.++.|.+.+|...+ ..-.+.+ +-.++|+.|++++|+.++..--..+
T Consensus 101 ~~IeaVDAsd------s~I~~eGle~L~~l~~i~~l~l~~ck~~d--D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 101 VKIEAVDASD------SSIMYEGLEHLRDLRSIKSLSLANCKYFD--DWCLERLGGLAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred ceEEEEecCC------chHHHHHHHHHhccchhhhheeccccchh--hHHHHHhcccccchheeeccCCCeechhHHHHH
Confidence 3566776665 34444444556677777777777765332 1111111 2346677777777766666555566
Q ss_pred cCCCCCCEEEccc
Q 037919 160 AEIADLRVLSLSQ 172 (397)
Q Consensus 160 ~~l~~L~~L~L~~ 172 (397)
..+++|+.|.+.+
T Consensus 173 ~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 173 LKLKNLRRLHLYD 185 (221)
T ss_pred HHhhhhHHHHhcC
Confidence 6666666666554
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.07 E-value=0.082 Score=25.69 Aligned_cols=7 Identities=57% Similarity=0.819 Sum_probs=2.5
Q ss_pred EEeCCCC
Q 037919 335 ALSLDNN 341 (397)
Q Consensus 335 ~L~Ls~n 341 (397)
.|++++|
T Consensus 5 ~L~l~~n 11 (17)
T PF13504_consen 5 TLDLSNN 11 (17)
T ss_dssp EEEETSS
T ss_pred EEECCCC
Confidence 3333333
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=0.029 Score=47.46 Aligned_cols=80 Identities=19% Similarity=0.135 Sum_probs=35.8
Q ss_pred CCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcC-CCCCCEEEccccc-CCCCCchhhcCCCCCC
Q 037919 113 LKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAE-IADLRVLSLSQNN-LQGNIPKELGRLVNLE 190 (397)
Q Consensus 113 L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~-l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~ 190 (397)
++.+|-+++.+. ..--+.+.+++.++.|.+.+|..+.+--.+.+++ .++|+.|++++|. |+...-..+..+++|+
T Consensus 103 IeaVDAsds~I~---~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSIM---YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred EEEEecCCchHH---HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 455555555444 2223334555666666666664433322222221 2455555555443 3333333344444444
Q ss_pred EEeee
Q 037919 191 QLDLS 195 (397)
Q Consensus 191 ~L~L~ 195 (397)
.|.+.
T Consensus 180 ~L~l~ 184 (221)
T KOG3864|consen 180 RLHLY 184 (221)
T ss_pred HHHhc
Confidence 44443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.01 E-value=0.45 Score=25.81 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=14.1
Q ss_pred CCCCCEEEcCCCCCCCCCccChhhh
Q 037919 110 LPYLKTLSIFNCFVSSPVTLSPTLF 134 (397)
Q Consensus 110 l~~L~~L~ls~~~~~~~~~~~~~~~ 134 (397)
+++|++|+|++|.+. .+|...|
T Consensus 1 L~~L~~L~L~~N~l~---~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS---SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC---cCCHHHc
Confidence 356777777777766 4555544
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.01 E-value=0.45 Score=25.81 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=14.1
Q ss_pred CCCCCEEEcCCCCCCCCCccChhhh
Q 037919 110 LPYLKTLSIFNCFVSSPVTLSPTLF 134 (397)
Q Consensus 110 l~~L~~L~ls~~~~~~~~~~~~~~~ 134 (397)
+++|++|+|++|.+. .+|...|
T Consensus 1 L~~L~~L~L~~N~l~---~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS---SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC---cCCHHHc
Confidence 356777777777766 4555544
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.50 E-value=0.24 Score=26.37 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=4.1
Q ss_pred CCCEEeCCCCcC
Q 037919 332 TLTALSLDNNNL 343 (397)
Q Consensus 332 ~L~~L~Ls~n~l 343 (397)
+|+.|+|++|+|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 334444444443
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.76 E-value=0.035 Score=48.09 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=29.5
Q ss_pred CCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCC
Q 037919 161 EIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG 222 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 222 (397)
.++.|..|+++.|.+. ..|..+.....++.+++..|..+ ..|.++...+.+++++..++.
T Consensus 63 ~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 63 ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence 3344444555544443 44444544445555555555444 345555555555555554444
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.42 E-value=0.048 Score=47.30 Aligned_cols=86 Identities=26% Similarity=0.261 Sum_probs=39.4
Q ss_pred hcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCc
Q 037919 159 LAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQ 238 (397)
Q Consensus 159 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 238 (397)
+......+.||++.|++. ..-..|.-++.+..|+++.|++. ..|..+.....+..+++..|..+ ..|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344455555555555543 22222333344455555555544 34444444444444444444443 3444555555555
Q ss_pred eeeccCCcC
Q 037919 239 KIDLGSNKL 247 (397)
Q Consensus 239 ~L~l~~n~l 247 (397)
++++.++.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 555544443
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.92 E-value=2.2 Score=23.26 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=9.5
Q ss_pred CCCEEeCCCCcCCcCCC
Q 037919 332 TLTALSLDNNNLSGTVP 348 (397)
Q Consensus 332 ~L~~L~Ls~n~l~~~~p 348 (397)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4666666666665 344
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.91 E-value=2.2 Score=23.11 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=7.0
Q ss_pred CCCCEEeCcCCCCCc
Q 037919 138 SSLEHLALYSNPTLS 152 (397)
Q Consensus 138 ~~L~~L~l~~n~~l~ 152 (397)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 345555555554333
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.81 E-value=3.6 Score=22.45 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=9.2
Q ss_pred CCCCEEeCCCCcCC
Q 037919 331 NTLTALSLDNNNLS 344 (397)
Q Consensus 331 ~~L~~L~Ls~n~l~ 344 (397)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45667777777665
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.62 E-value=4 Score=22.59 Aligned_cols=13 Identities=46% Similarity=0.695 Sum_probs=7.1
Q ss_pred CCCEEeCCCCcCC
Q 037919 332 TLTALSLDNNNLS 344 (397)
Q Consensus 332 ~L~~L~Ls~n~l~ 344 (397)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.73 E-value=33 Score=33.48 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=19.2
Q ss_pred CCEEEcccccCCcCCh---hhccCCCCCCEEeCCCCcCC
Q 037919 309 LTSISVSECGLTGPIP---NFFSSLNTLTALSLDNNNLS 344 (397)
Q Consensus 309 L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~Ls~n~l~ 344 (397)
+..+.++.|.+....- .....-+.+..|++++|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 4455555555543222 12234466777777777654
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.59 E-value=5.9 Score=39.04 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=17.6
Q ss_pred CCCCCCeeeccCCcCCCCC--ccccCCCCCCCEEEcccc
Q 037919 281 GLQQLQYLIVYHNPINSRI--PLFLGTLQNLTSISVSEC 317 (397)
Q Consensus 281 ~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~L~~n 317 (397)
+.+.+..++|++|++.... ...-...|.|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3455566666666653211 111122355556666665
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.52 E-value=4.6 Score=39.81 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=6.8
Q ss_pred CCCEEEcccccCC
Q 037919 308 NLTSISVSECGLT 320 (397)
Q Consensus 308 ~L~~L~L~~n~l~ 320 (397)
.|++|-+.+|.+.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 4455555555544
No 91
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=46.01 E-value=14 Score=27.58 Aligned_cols=13 Identities=46% Similarity=0.930 Sum_probs=7.8
Q ss_pred CcchhHHHHHHHH
Q 037919 1 MASATFFFVGFLV 13 (397)
Q Consensus 1 m~~~~~~~~~~~~ 13 (397)
||+..++|+.++|
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 8877755554443
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=38.12 E-value=1.1e+02 Score=29.92 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=37.0
Q ss_pred CCeeeccCCcCCCCCcc---ccCCCCCCCEEEcccccCCc----CChhhccCCCCCCEEeCCCCcCC
Q 037919 285 LQYLIVYHNPINSRIPL---FLGTLQNLTSISVSECGLTG----PIPNFFSSLNTLTALSLDNNNLS 344 (397)
Q Consensus 285 L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~Ls~n~l~ 344 (397)
+..+.++.+......-. .....+.+..|++++|.... .+|..+.....++.+..+.|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 55566666655433222 23445789999999998764 24445555556777777777554
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.80 E-value=63 Score=38.78 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=24.8
Q ss_pred eccCCcCCCCCccccCCCCCCCEEEcccccCC
Q 037919 289 IVYHNPINSRIPLFLGTLQNLTSISVSECGLT 320 (397)
Q Consensus 289 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 320 (397)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46788887777777777888888888888765
Done!