Query 037919
Match_columns 397
No_of_seqs 418 out of 4472
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 09:16:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 6.9E-44 2.4E-48 331.2 21.1 300 31-397 2-306 (313)
2 3rgz_A Protein brassinosteroid 100.0 3.5E-43 1.2E-47 364.2 22.4 335 32-394 9-380 (768)
3 4eco_A Uncharacterized protein 100.0 2.4E-42 8.3E-47 350.5 18.7 315 31-370 26-470 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 3.3E-41 1.1E-45 349.1 23.0 335 30-393 264-787 (876)
5 3rgz_A Protein brassinosteroid 100.0 7.3E-41 2.5E-45 346.8 22.8 293 97-397 378-742 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 4.3E-40 1.5E-44 321.3 23.6 320 66-397 10-410 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 5.7E-39 2E-43 315.3 25.8 327 58-397 4-335 (477)
8 3t6q_A CD180 antigen; protein- 100.0 1.3E-36 4.5E-41 307.2 27.6 301 82-397 255-562 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 5.8E-36 2E-40 302.5 27.6 140 254-397 419-560 (606)
10 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.3E-35 1.5E-39 293.5 27.7 297 81-397 52-512 (562)
11 2z7x_B TOLL-like receptor 1, v 100.0 3E-35 1E-39 291.9 25.4 159 232-397 321-483 (520)
12 2z81_A CD282 antigen, TOLL-lik 100.0 4.4E-35 1.5E-39 292.6 24.7 314 66-397 6-512 (549)
13 3v47_A TOLL-like receptor 5B a 100.0 2.8E-35 9.7E-40 287.2 20.7 285 80-376 53-414 (455)
14 2id5_A Lingo-1, leucine rich r 100.0 1.8E-34 6E-39 283.4 25.1 303 80-396 55-357 (477)
15 3t6q_A CD180 antigen; protein- 100.0 2.4E-34 8.1E-39 290.7 26.4 171 66-246 14-190 (606)
16 3o6n_A APL1; leucine-rich repe 100.0 7.8E-35 2.7E-39 278.6 21.4 292 81-397 45-354 (390)
17 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-34 6.6E-39 301.7 25.5 311 64-393 14-373 (844)
18 4g8a_A TOLL-like receptor 4; l 100.0 4.6E-34 1.6E-38 289.5 27.0 318 67-397 34-582 (635)
19 2z63_A TOLL-like receptor 4, v 100.0 2.6E-34 9E-39 288.1 24.0 140 255-397 392-533 (570)
20 1ziw_A TOLL-like receptor 3; i 100.0 1E-33 3.4E-38 289.9 28.0 261 133-397 324-624 (680)
21 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-35 5.9E-40 274.6 13.3 247 80-368 54-302 (313)
22 4eco_A Uncharacterized protein 100.0 6.1E-35 2.1E-39 296.2 17.9 296 81-394 206-578 (636)
23 3oja_B Anopheles plasmodium-re 100.0 4.8E-34 1.6E-38 287.8 22.8 291 82-397 52-360 (597)
24 4fcg_A Uncharacterized protein 100.0 2.6E-34 8.8E-39 268.4 16.5 286 29-370 21-314 (328)
25 1xku_A Decorin; proteoglycan, 100.0 9.7E-33 3.3E-37 258.0 26.8 269 111-393 52-330 (330)
26 1ziw_A TOLL-like receptor 3; i 100.0 4.6E-33 1.6E-37 285.0 26.4 314 66-392 6-363 (680)
27 2ft3_A Biglycan; proteoglycan, 100.0 6.5E-33 2.2E-37 259.5 25.1 268 111-393 54-331 (332)
28 2z7x_B TOLL-like receptor 1, v 100.0 4.7E-33 1.6E-37 276.1 24.4 292 81-394 21-456 (520)
29 4ecn_A Leucine-rich repeat pro 100.0 3.7E-33 1.3E-37 289.0 23.7 293 81-394 448-839 (876)
30 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-32 8.7E-37 273.4 25.4 145 84-247 34-181 (562)
31 3vq2_A TLR4, TOLL-like recepto 100.0 6.5E-32 2.2E-36 272.8 24.3 152 67-228 14-170 (606)
32 3j0a_A TOLL-like receptor 5; m 100.0 8.5E-32 2.9E-36 281.7 25.6 280 80-371 47-376 (844)
33 3o6n_A APL1; leucine-rich repe 100.0 6.2E-32 2.1E-36 258.4 22.5 290 81-397 69-376 (390)
34 4fmz_A Internalin; leucine ric 100.0 3.9E-31 1.3E-35 248.8 27.4 280 81-394 66-345 (347)
35 2z80_A TOLL-like receptor 2, v 100.0 1.9E-32 6.4E-37 258.5 17.7 257 111-374 52-318 (353)
36 1xku_A Decorin; proteoglycan, 100.0 5.7E-31 1.9E-35 246.0 25.1 268 112-396 32-307 (330)
37 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-31 1.3E-35 247.5 23.3 267 112-396 34-308 (332)
38 2z66_A Variable lymphocyte rec 100.0 3.2E-32 1.1E-36 251.8 15.0 260 111-377 28-294 (306)
39 3oja_B Anopheles plasmodium-re 100.0 3.9E-31 1.3E-35 266.5 24.2 270 109-394 49-336 (597)
40 4fmz_A Internalin; leucine ric 100.0 2.5E-30 8.6E-35 243.2 27.2 281 81-395 44-324 (347)
41 2z66_A Variable lymphocyte rec 100.0 2E-31 6.9E-36 246.4 18.7 271 115-396 11-288 (306)
42 2z80_A TOLL-like receptor 2, v 100.0 1.5E-31 5E-36 252.4 15.7 278 109-397 29-316 (353)
43 2z63_A TOLL-like receptor 4, v 100.0 1E-30 3.5E-35 262.0 22.7 167 208-377 370-538 (570)
44 1o6v_A Internalin A; bacterial 100.0 4.8E-30 1.6E-34 251.0 26.7 281 81-395 68-388 (466)
45 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-31 6.2E-36 266.4 16.2 152 102-259 19-172 (549)
46 1o6v_A Internalin A; bacterial 100.0 2.9E-29 9.8E-34 245.5 28.2 277 81-393 46-342 (466)
47 3zyi_A Leucine-rich repeat-con 100.0 7.2E-30 2.5E-34 248.8 22.9 252 112-374 55-307 (452)
48 4fcg_A Uncharacterized protein 100.0 5E-30 1.7E-34 239.3 20.6 234 81-344 81-314 (328)
49 3zyj_A Leucine-rich repeat-con 100.0 9.8E-30 3.4E-34 247.0 22.8 252 112-374 44-296 (440)
50 3bz5_A Internalin-J, INLJ; leu 100.0 5.1E-29 1.8E-33 242.6 25.5 273 82-394 43-351 (457)
51 1wwl_A Monocyte differentiatio 100.0 2.4E-31 8.3E-36 246.6 8.2 249 107-371 39-310 (312)
52 3zyi_A Leucine-rich repeat-con 100.0 6.4E-29 2.2E-33 242.1 24.4 237 102-346 68-305 (452)
53 1ozn_A Reticulon 4 receptor; N 100.0 3.5E-29 1.2E-33 229.0 21.0 254 114-377 14-268 (285)
54 1ozn_A Reticulon 4 receptor; N 100.0 1.8E-29 6.1E-34 231.0 18.9 239 110-353 31-270 (285)
55 3zyj_A Leucine-rich repeat-con 100.0 8.3E-29 2.8E-33 240.5 24.5 236 102-345 57-293 (440)
56 3bz5_A Internalin-J, INLJ; leu 100.0 7.7E-29 2.6E-33 241.4 24.3 259 101-393 32-297 (457)
57 4g8a_A TOLL-like receptor 4; l 100.0 7.3E-29 2.5E-33 251.3 24.4 142 102-249 45-187 (635)
58 1wwl_A Monocyte differentiatio 100.0 1.1E-30 3.8E-35 242.1 5.8 249 133-395 38-309 (312)
59 3o53_A Protein LRIM1, AGAP0063 100.0 1.3E-29 4.5E-34 235.5 8.1 259 98-376 21-282 (317)
60 3o53_A Protein LRIM1, AGAP0063 100.0 1.3E-29 4.4E-34 235.5 7.0 257 113-390 12-270 (317)
61 3oja_A Leucine-rich immune mol 100.0 5.4E-29 1.9E-33 244.5 10.6 234 111-364 34-269 (487)
62 1jl5_A Outer protein YOPM; leu 100.0 1.3E-26 4.4E-31 225.5 23.9 229 111-377 131-379 (454)
63 3oja_A Leucine-rich immune mol 99.9 1.2E-28 4.3E-33 241.9 8.9 244 136-397 32-284 (487)
64 1jl5_A Outer protein YOPM; leu 99.9 4.8E-26 1.6E-30 221.5 24.9 263 82-395 92-370 (454)
65 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-29 3.8E-34 247.9 -2.9 266 103-371 105-412 (461)
66 2z62_A TOLL-like receptor 4, v 99.9 2E-26 7E-31 209.6 18.0 217 155-376 22-243 (276)
67 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-29 3.8E-34 248.0 -3.9 304 81-394 56-410 (461)
68 2o6q_A Variable lymphocyte rec 99.9 1.3E-25 4.5E-30 203.6 22.2 208 163-375 16-223 (270)
69 3g06_A SSPH2 (leucine-rich rep 99.9 8.3E-26 2.8E-30 226.8 22.8 245 82-375 41-302 (622)
70 2z62_A TOLL-like receptor 4, v 99.9 2.7E-26 9.1E-31 208.8 16.9 209 138-348 28-241 (276)
71 1p9a_G Platelet glycoprotein I 99.9 9.2E-26 3.1E-30 206.7 18.9 207 158-373 5-211 (290)
72 2o6q_A Variable lymphocyte rec 99.9 8.1E-25 2.8E-29 198.4 24.3 205 139-347 17-221 (270)
73 3rfs_A Internalin B, repeat mo 99.9 1.3E-25 4.3E-30 204.0 16.8 208 135-354 38-245 (272)
74 3rfs_A Internalin B, repeat mo 99.9 1.5E-25 5.3E-30 203.4 16.5 207 159-378 37-243 (272)
75 1p9a_G Platelet glycoprotein I 99.9 1.3E-24 4.3E-29 199.1 20.9 205 134-346 6-210 (290)
76 3g06_A SSPH2 (leucine-rich rep 99.9 6.6E-24 2.2E-28 213.0 24.9 230 81-354 61-307 (622)
77 2ast_B S-phase kinase-associat 99.9 1.4E-26 5E-31 216.5 2.5 264 65-352 38-314 (336)
78 2ca6_A RAN GTPase-activating p 99.9 1.7E-26 5.7E-31 220.4 2.3 195 102-296 23-257 (386)
79 2ca6_A RAN GTPase-activating p 99.9 1.2E-26 4.2E-31 221.4 1.1 239 133-374 27-320 (386)
80 2ast_B S-phase kinase-associat 99.9 3.8E-26 1.3E-30 213.7 3.9 254 112-378 48-314 (336)
81 4glp_A Monocyte differentiatio 99.9 9.6E-25 3.3E-29 202.0 12.6 202 162-371 90-308 (310)
82 4glp_A Monocyte differentiatio 99.9 1.2E-24 4.1E-29 201.3 13.1 200 138-344 91-307 (310)
83 3goz_A Leucine-rich repeat-con 99.9 2.1E-25 7E-30 211.0 6.8 250 97-350 8-303 (362)
84 2xwt_C Thyrotropin receptor; s 99.9 6.9E-24 2.3E-28 188.7 15.8 200 112-341 32-236 (239)
85 3goz_A Leucine-rich repeat-con 99.9 5.5E-25 1.9E-29 208.1 7.3 255 115-375 2-302 (362)
86 2xwt_C Thyrotropin receptor; s 99.9 1.7E-23 5.9E-28 186.1 16.3 196 164-367 32-236 (239)
87 3m19_A Variable lymphocyte rec 99.9 5E-23 1.7E-27 184.5 18.9 183 187-374 14-196 (251)
88 3m19_A Variable lymphocyte rec 99.9 7.2E-23 2.5E-27 183.5 19.9 181 163-346 14-194 (251)
89 1h6u_A Internalin H; cell adhe 99.9 2.6E-23 8.8E-28 192.1 16.0 195 107-321 37-231 (308)
90 1h6u_A Internalin H; cell adhe 99.9 4.2E-23 1.4E-27 190.7 17.2 195 134-345 37-231 (308)
91 2o6s_A Variable lymphocyte rec 99.9 1.5E-21 5E-26 169.8 16.3 160 111-281 28-187 (208)
92 3cvr_A Invasion plasmid antige 99.9 1.6E-21 5.4E-26 193.5 16.4 187 164-380 60-253 (571)
93 2o6s_A Variable lymphocyte rec 99.9 2.8E-21 9.7E-26 168.0 14.9 160 188-354 29-188 (208)
94 3ogk_B Coronatine-insensitive 99.9 7.5E-24 2.5E-28 213.1 -2.2 301 82-393 165-524 (592)
95 3cvr_A Invasion plasmid antige 99.9 8.4E-21 2.9E-25 188.3 17.3 186 111-328 59-251 (571)
96 4ay9_X Follicle-stimulating ho 99.9 1.9E-20 6.6E-25 176.0 18.7 229 102-341 23-256 (350)
97 4ay9_X Follicle-stimulating ho 99.8 1.5E-20 5E-25 176.9 17.1 239 65-318 10-257 (350)
98 3ogk_B Coronatine-insensitive 99.8 2.5E-23 8.6E-28 209.3 -2.5 300 82-393 139-499 (592)
99 2xot_A Amphoterin-induced prot 99.8 1.3E-20 4.5E-25 177.9 13.7 152 190-344 21-176 (361)
100 2v9t_B SLIT homolog 2 protein 99.8 3.2E-20 1.1E-24 162.8 14.4 156 214-374 14-169 (220)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 4.9E-20 1.7E-24 161.6 14.3 158 213-375 13-171 (220)
102 1h6t_A Internalin B; cell adhe 99.8 8.1E-20 2.8E-24 167.2 14.4 173 134-321 42-214 (291)
103 3e6j_A Variable lymphocyte rec 99.8 2.1E-19 7.3E-24 158.5 16.4 157 212-374 20-176 (229)
104 2v9t_B SLIT homolog 2 protein 99.8 2.7E-19 9.1E-24 156.9 16.1 154 190-346 14-167 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-19 7E-24 157.6 15.4 157 189-348 13-170 (220)
106 2p1m_B Transport inhibitor res 99.8 2.9E-22 1E-26 201.5 -3.4 133 258-394 371-518 (594)
107 1h6t_A Internalin B; cell adhe 99.8 1.3E-19 4.3E-24 165.9 14.4 175 107-299 42-216 (291)
108 1m9s_A Internalin B; cell inva 99.8 1.9E-19 6.4E-24 180.4 16.5 172 108-297 40-211 (605)
109 1m9s_A Internalin B; cell inva 99.8 1.2E-19 3.9E-24 181.9 14.2 190 113-322 23-212 (605)
110 2p1m_B Transport inhibitor res 99.8 2.7E-22 9.2E-27 201.8 -5.1 300 82-394 106-493 (594)
111 2xot_A Amphoterin-induced prot 99.8 1.8E-19 6.2E-24 170.0 13.6 177 166-345 21-203 (361)
112 3e6j_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 154.1 17.2 157 188-348 20-176 (229)
113 4ezg_A Putative uncharacterize 99.8 8.9E-19 3E-23 150.8 13.1 153 185-371 42-195 (197)
114 4b8c_D Glucose-repressible alc 99.8 5.9E-20 2E-24 188.3 5.7 218 32-276 129-358 (727)
115 4ezg_A Putative uncharacterize 99.8 9.8E-19 3.3E-23 150.6 12.3 153 159-319 40-193 (197)
116 1dce_A Protein (RAB geranylger 99.8 2.4E-21 8.1E-26 192.9 -7.3 204 135-364 346-567 (567)
117 1dce_A Protein (RAB geranylger 99.8 1.3E-21 4.4E-26 194.9 -9.5 203 160-388 346-566 (567)
118 1xeu_A Internalin C; cellular 99.8 1.6E-18 5.6E-23 156.1 10.3 171 161-346 17-187 (263)
119 1xeu_A Internalin C; cellular 99.8 1.1E-18 3.6E-23 157.3 7.9 169 110-297 18-186 (263)
120 1w8a_A SLIT protein; signaling 99.7 1.4E-17 4.8E-22 142.7 12.4 174 214-397 11-185 (192)
121 4b8c_D Glucose-repressible alc 99.7 7.4E-19 2.5E-23 180.2 4.9 220 138-372 173-406 (727)
122 1w8a_A SLIT protein; signaling 99.7 1.7E-17 5.7E-22 142.2 12.5 134 237-375 10-144 (192)
123 2ell_A Acidic leucine-rich nuc 99.7 8.7E-17 3E-21 134.6 12.2 132 211-344 24-160 (168)
124 2wfh_A SLIT homolog 2 protein 99.7 1.5E-16 5.2E-21 136.3 12.6 131 238-374 13-143 (193)
125 2ell_A Acidic leucine-rich nuc 99.7 1.5E-16 5.1E-21 133.1 11.7 132 138-272 24-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.7 1.1E-16 3.8E-21 131.1 9.1 127 235-365 17-148 (149)
127 2o6r_A Variable lymphocyte rec 99.7 9.1E-16 3.1E-20 129.5 14.3 133 237-374 9-141 (177)
128 3sb4_A Hypothetical leucine ri 99.7 3.4E-17 1.2E-21 152.4 5.9 102 258-363 225-327 (329)
129 2je0_A Acidic leucine-rich nuc 99.7 1.5E-16 5.3E-21 130.3 8.2 128 211-340 17-149 (149)
130 3sb4_A Hypothetical leucine ri 99.7 6.4E-17 2.2E-21 150.6 6.6 224 110-338 48-328 (329)
131 2wfh_A SLIT homolog 2 protein 99.7 1.3E-15 4.6E-20 130.4 14.1 129 214-346 13-141 (193)
132 2o6r_A Variable lymphocyte rec 99.7 1.5E-15 5.1E-20 128.1 14.0 131 261-397 9-139 (177)
133 4fdw_A Leucine rich hypothetic 99.6 1.6E-14 5.6E-19 137.6 20.6 248 105-369 130-382 (401)
134 4fdw_A Leucine rich hypothetic 99.6 1.1E-13 3.6E-18 132.0 20.0 245 109-372 111-360 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.6 3.4E-15 1.2E-19 125.9 8.0 132 232-370 16-153 (176)
136 1ds9_A Outer arm dynein; leuci 99.5 3.4E-17 1.2E-21 141.0 -6.8 133 136-274 16-155 (198)
137 1ds9_A Outer arm dynein; leuci 99.5 3.7E-17 1.3E-21 140.7 -6.9 109 207-320 44-153 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.4E-19 121.3 9.0 132 254-393 14-151 (176)
139 3g39_A Variable lymphocyte rec 99.5 7.6E-14 2.6E-18 116.9 11.0 110 260-374 10-119 (170)
140 3g39_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 115.2 12.1 110 236-348 10-119 (170)
141 2r9u_A Variable lymphocyte rec 99.5 2.2E-13 7.4E-18 114.5 11.2 109 261-374 14-122 (174)
142 2r9u_A Variable lymphocyte rec 99.5 4.5E-13 1.5E-17 112.5 12.3 107 237-346 14-120 (174)
143 3un9_A NLR family member X1; l 99.4 3.5E-15 1.2E-19 140.9 -5.5 188 163-370 72-283 (372)
144 3un9_A NLR family member X1; l 99.3 2.8E-14 9.7E-19 134.6 -4.0 138 235-374 101-256 (372)
145 2ifg_A High affinity nerve gro 99.3 6.1E-12 2.1E-16 117.6 9.9 127 263-396 12-142 (347)
146 4fs7_A Uncharacterized protein 99.3 2.4E-10 8.1E-15 108.8 19.9 85 278-367 292-376 (394)
147 2ifg_A High affinity nerve gro 99.3 1.5E-11 5.1E-16 114.9 11.1 106 238-346 11-118 (347)
148 4gt6_A Cell surface protein; l 99.2 1.3E-09 4.6E-14 103.5 20.8 255 103-369 79-369 (394)
149 4fs7_A Uncharacterized protein 99.1 1.1E-09 3.8E-14 104.1 16.4 237 106-362 157-393 (394)
150 2ra8_A Uncharacterized protein 99.1 4.6E-11 1.6E-15 111.9 5.6 64 306-371 251-321 (362)
151 2ra8_A Uncharacterized protein 99.0 1.6E-10 5.6E-15 108.1 5.5 83 282-368 251-341 (362)
152 4gt6_A Cell surface protein; l 99.0 1.9E-08 6.3E-13 95.6 17.3 247 105-369 108-390 (394)
153 4h09_A Hypothetical leucine ri 98.9 1.4E-07 4.8E-12 89.0 20.2 261 82-366 47-342 (379)
154 4h09_A Hypothetical leucine ri 98.6 2E-06 6.8E-11 81.0 19.4 266 105-389 40-340 (379)
155 1io0_A Tropomodulin; LRR prote 98.6 4.8E-09 1.6E-13 88.7 0.1 115 254-370 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 1.1E-08 3.7E-13 86.5 0.9 89 256-344 62-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 4.5E-08 1.5E-12 87.1 -0.3 65 306-374 169-237 (267)
158 3e4g_A ATP synthase subunit S, 98.3 3.9E-07 1.3E-11 75.4 3.9 84 112-198 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 9.6E-07 3.3E-11 78.5 5.5 80 160-241 167-257 (267)
160 3e4g_A ATP synthase subunit S, 98.2 7.5E-07 2.6E-11 73.7 2.7 82 284-367 62-149 (176)
161 3rfe_A Platelet glycoprotein I 97.5 0.00013 4.3E-09 57.4 5.9 57 311-371 12-69 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 2.5E-05 8.6E-10 65.7 1.8 113 256-370 38-170 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 5.2E-05 1.8E-09 63.8 1.6 87 257-343 68-169 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.0034 1.2E-07 49.0 6.4 58 286-345 11-69 (130)
165 2lz0_A Uncharacterized protein 64.6 13 0.00043 26.9 5.3 42 129-172 11-52 (100)
166 2lz0_A Uncharacterized protein 46.8 28 0.00094 25.0 4.6 38 277-315 14-51 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.9e-44 Score=331.20 Aligned_cols=300 Identities=27% Similarity=0.505 Sum_probs=183.0
Q ss_pred CCCHHHHHHHHHHHHhCCCC---CCCCCCCCCCCCCCCccceEcCCCCCCCCcccEEEEEcCCCCCCCCccccccccccc
Q 037919 31 EMDEDELLGLFEVMSSLIED---PGWGRAHPEPCTETPWPGVECEIGEDDPSIFHVTKVHIGPDIITPTCKISANISDAL 107 (397)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~---~~w~~~~~~~c~~~~w~gv~C~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l 107 (397)
.|+++|++||++||+++.++ .+|... .++|. +.|.||+|+... ..++|+.+++++ +.+.|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~-~~~C~-~~w~gv~C~~~~---~~~~l~~L~L~~------~~l~~------ 64 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPT-TDCCN-RTWLGVLCDTDT---QTYRVNNLDLSG------LNLPK------ 64 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTT-SCTTT-TCSTTEEECCSS---SCCCEEEEEEEC------CCCSS------
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCC-CCCCc-CCCcceEeCCCC---CCceEEEEECCC------CCccC------
Confidence 58899999999999999754 378653 36774 359999997531 124666666654 22222
Q ss_pred cCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcC-CCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCC
Q 037919 108 LKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYS-NPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRL 186 (397)
Q Consensus 108 ~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 186 (397)
...+| ..+.++++|++|++++ | .+.+.+|..++++++|++|++++|.+++.+|..+.++
T Consensus 65 ------------------~~~~~-~~l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 65 ------------------PYPIP-SSLANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp ------------------CEECC-GGGGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ------------------CcccC-hhHhCCCCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 00111 1234444455555543 4 4455555555555555555555555544445555555
Q ss_pred CCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCC-CCcEEE
Q 037919 187 VNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLS-RLVLLD 265 (397)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~ 265 (397)
++|++|++++|.+.+.+| ..+..+++|++|++++|.+++.+|..+..++ +|++|+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p------------------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLP------------------------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp TTCCEEECCSSEEESCCC------------------------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred CCCCEEeCCCCccCCcCC------------------------hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 555555555555544444 4444455555555555555444555555554 555555
Q ss_pred cccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCc
Q 037919 266 LSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSG 345 (397)
Q Consensus 266 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~ 345 (397)
+++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|++|++++|++++.+|. +..+++|++|++++|++++
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence 555555555555555554 66666666666666666666667777777777777655554 6667777777777777777
Q ss_pred CCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcCCCC
Q 037919 346 TVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDKLCT 397 (397)
Q Consensus 346 ~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~~C~ 397 (397)
.+|..+..+++ |++|++++|+++|.+|.. ..++.+ +.+++++|+++|+
T Consensus 259 ~~p~~l~~l~~--L~~L~Ls~N~l~~~ip~~-~~l~~L-~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 259 TLPQGLTQLKF--LHSLNVSFNNLCGEIPQG-GNLQRF-DVSAYANNKCLCG 306 (313)
T ss_dssp CCCGGGGGCTT--CCEEECCSSEEEEECCCS-TTGGGS-CGGGTCSSSEEES
T ss_pred cCChHHhcCcC--CCEEECcCCcccccCCCC-cccccc-ChHHhcCCCCccC
Confidence 77777777777 777777777777777765 445566 6777777777764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-43 Score=364.19 Aligned_cols=335 Identities=33% Similarity=0.474 Sum_probs=230.2
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCCCCCCCCCCCCCCccceEcCCCCCCCCcccEEEEEcCCCCCCCCcccccc---ccc
Q 037919 32 MDEDELLGLFEVMSSLIED---PGWGRAHPEPCTETPWPGVECEIGEDDPSIFHVTKVHIGPDIITPTCKISAN---ISD 105 (397)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~---~~w~~~~~~~c~~~~w~gv~C~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~---~~~ 105 (397)
..++|++||++||+++.++ .+|... .|||. |.||+|+. +||+++++++ ..+.|. +++
T Consensus 9 ~~~~~~~all~~k~~~~~~~~l~~W~~~-~~~C~---w~gv~C~~-------~~v~~L~L~~------~~l~g~~~~l~~ 71 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKNLLPDWSSN-KNPCT---FDGVTCRD-------DKVTSIDLSS------KPLNVGFSAVSS 71 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTTSSTTCCTT-SCGGG---STTEEEET-------TEEEEEECTT------SCCCEEHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCcccccCCCCC-CCCcC---CcceEECC-------CcEEEEECCC------CCcCCccCccCh
Confidence 3578999999999998754 479743 47887 99999983 4999999997 455665 555
Q ss_pred cccCC-----------------------CCCCEEEcCCCCCCCCCccCh-hhhCCCCCCCEEeCcCCCCCcccCchhh-c
Q 037919 106 ALLKL-----------------------PYLKTLSIFNCFVSSPVTLSP-TLFGALSSLEHLALYSNPTLSGEIPSSL-A 160 (397)
Q Consensus 106 ~l~~l-----------------------~~L~~L~ls~~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~p~~l-~ 160 (397)
.+.++ ++|++|+|++|.+.+ .+|. ..++++++|++|++++| .+.+.+|..+ .
T Consensus 72 ~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 148 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSN-TLDFPGKVSGGL 148 (768)
T ss_dssp HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEE--EGGGGGGGGGCTTCCEEECCSS-EEECCSSCCSCC
T ss_pred hHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCC--cCCChHHHhCCCCCCEEECcCC-ccCCcCCHHHhc
Confidence 55444 445555555444432 2222 12444555555555554 4444444433 4
Q ss_pred CCCCCCEEEcccccCCCCCchh---hcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccC
Q 037919 161 EIADLRVLSLSQNNLQGNIPKE---LGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLL 237 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 237 (397)
++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+.+|. ++.+++|
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L 225 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSAL 225 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSC
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCC
Confidence 4455555555555554444443 44555555555555555443332 5666777777777777665555 6777777
Q ss_pred ceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCC-CCCCEEEccc
Q 037919 238 QKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTL-QNLTSISVSE 316 (397)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~L~~ 316 (397)
++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence 77777777777666777777777777777777776665544 66777777777777777777776654 8888999998
Q ss_pred ccCCcCChhhccCCCCCCEEeCCCCcCCcCCCcc-ccCCCcCCCCEEEccCCcCccccCCChHHHh-hccceEeccCCcC
Q 037919 317 CGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPS-LGSLPNSMLDQLNLSHNQLSGELQFPEEFIE-RLGERLDVRGNDK 394 (397)
Q Consensus 317 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~-~l~~~l~l~~N~~ 394 (397)
|++++.+|..++.+++|++|++++|.++|.+|.. +..+++ |++|++++|+++|.+|..+.... .+ ++|++++|+.
T Consensus 304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~--L~~L~Ls~n~l~~~~p~~l~~l~~~L-~~L~Ls~N~l 380 (768)
T 3rgz_A 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG--LKVLDLSFNEFSGELPESLTNLSASL-LTLDLSSNNF 380 (768)
T ss_dssp SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT--CCEEECCSSEEEECCCTTHHHHTTTC-SEEECCSSEE
T ss_pred CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCC--CCEEeCcCCccCccccHHHHhhhcCC-cEEEccCCCc
Confidence 8888888888888899999999999888888876 888888 99999999999988998887776 66 8899988863
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-42 Score=350.47 Aligned_cols=315 Identities=22% Similarity=0.328 Sum_probs=230.7
Q ss_pred CCCHHHHHHHHHHHHhCCCC------------CCCCCCCCCCCCCCCc---cceEcCCCCCCCCcccEEEEEcCCCCCCC
Q 037919 31 EMDEDELLGLFEVMSSLIED------------PGWGRAHPEPCTETPW---PGVECEIGEDDPSIFHVTKVHIGPDIITP 95 (397)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~------------~~w~~~~~~~c~~~~w---~gv~C~~~~~~~~~~~v~~l~l~~~~~~~ 95 (397)
+...+|+.||.+++.++..+ .+|... .++|. | .||+|+.. +||++|+|++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~---w~~~~GV~C~~~------~~V~~L~L~~----- 90 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDM---WGAQPGVSLNSN------GRVTGLSLEG----- 90 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGG---TTCCTTEEECTT------CCEEEEECTT-----
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCccc---ccCCCCeEEcCC------CCEEEEEecC-----
Confidence 34467999999999987543 146543 47787 9 99999753 6999999998
Q ss_pred CccccccccccccCCCCCCEEEcCCCCC------CC--------------------------------------------
Q 037919 96 TCKISANISDALLKLPYLKTLSIFNCFV------SS-------------------------------------------- 125 (397)
Q Consensus 96 ~~~~~~~~~~~l~~l~~L~~L~ls~~~~------~~-------------------------------------------- 125 (397)
+.+.|.+|+.++++++|++|+|++|.+ .+
T Consensus 91 -~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~ 169 (636)
T 4eco_A 91 -FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169 (636)
T ss_dssp -SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHC
T ss_pred -cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcC
Confidence 789999999999999999999998854 00
Q ss_pred -------------------------CCccChhhhCCCCCCCEEeCcCCCCCccc-----------------Cchhhc--C
Q 037919 126 -------------------------PVTLSPTLFGALSSLEHLALYSNPTLSGE-----------------IPSSLA--E 161 (397)
Q Consensus 126 -------------------------~~~~~~~~~~~l~~L~~L~l~~n~~l~~~-----------------~p~~l~--~ 161 (397)
...+|. .++++++|++|++++| .+++. +|..++ +
T Consensus 170 l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~-~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~ 247 (636)
T 4eco_A 170 PQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDN 247 (636)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred ccccccccccccchhhhhhccccCCCccCCH-HHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcc
Confidence 002443 4789999999999999 78886 899988 9
Q ss_pred CCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCC-CCC-ccChhccCC------CCCCEEEccCCCCCCCCCc--cc
Q 037919 162 IADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNN-LSG-EIPDEIGGM------ISLTVLDLSWNGLQGQVPP--SL 231 (397)
Q Consensus 162 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~l 231 (397)
+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|+++ .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 9999999999999999999999999999999999998 888 788877765 88888888888888 7777 78
Q ss_pred cCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCC-CCeeeccCCcCCCCCccccCCCC--C
Q 037919 232 GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQ-LQYLIVYHNPINSRIPLFLGTLQ--N 308 (397)
Q Consensus 232 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~--~ 308 (397)
+.+++|++|++++|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 888888888888888887777 6666667777777776666 55656666666 666666666665 3444444332 5
Q ss_pred CCEEEcccccCCcCChhhcc-------CCCCCCEEeCCCCcCCcCCCcc-ccCCCcCCCCEEEccCCcCc
Q 037919 309 LTSISVSECGLTGPIPNFFS-------SLNTLTALSLDNNNLSGTVPPS-LGSLPNSMLDQLNLSHNQLS 370 (397)
Q Consensus 309 L~~L~L~~n~l~~~~~~~~~-------~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~~~L~~L~l~~N~l~ 370 (397)
|++|++++|++++.+|..+. .+++|++|++++|+++ .+|.. +..+++ |++|++++|+++
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~--L~~L~Ls~N~l~ 470 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSP--LSSINLMGNMLT 470 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCC--CSEEECCSSCCS
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCC--CCEEECCCCCCC
Confidence 55555555555555555444 4445555555555555 23322 223444 444444444444
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.3e-41 Score=349.05 Aligned_cols=335 Identities=22% Similarity=0.295 Sum_probs=233.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCC----CCC--CCCCCc------------cceEcCCCCCCCCcccEEEEEcCCC
Q 037919 30 MEMDEDELLGLFEVMSSLIEDPGWGRAH----PEP--CTETPW------------PGVECEIGEDDPSIFHVTKVHIGPD 91 (397)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~w~~~~----~~~--c~~~~w------------~gv~C~~~~~~~~~~~v~~l~l~~~ 91 (397)
.++..+|+.||++||+++.++ +|.... .++ |. | .||+|+.. +||++|+|++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-~W~~~~~~~~~~~~~C~---W~~~~~~~~w~~~~GV~C~~~------~~V~~L~Ls~- 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSLN---WNFNKELDMWGDQPGVDLDNN------GRVTGLSLAG- 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-GCCCCCSSCSSCCCCCS---CCCSSCGGGTTCCTTEEECTT------SCEEEEECTT-
T ss_pred cccchHHHHHHHHHHHHcCCC-CCCcCCCcccccCCccc---cccccccccccCcCceEecCC------CCEEEEECcc-
Confidence 345577999999999999654 897653 355 65 9 99999853 6999999998
Q ss_pred CCCCCccccccccccccCCCCCCEEEc-CCCCCCCCC-------------------------------------------
Q 037919 92 IITPTCKISANISDALLKLPYLKTLSI-FNCFVSSPV------------------------------------------- 127 (397)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~l~~L~~L~l-s~~~~~~~~------------------------------------------- 127 (397)
+++.|.+|+.+.++++|++|+| ++|.+.+..
T Consensus 333 -----~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 333 -----FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp -----TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred -----CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 7899999999999999999999 666432210
Q ss_pred -------------------------------ccChhhhCCCCCCCEEeCcCCCCCcc-----------------cCchhh
Q 037919 128 -------------------------------TLSPTLFGALSSLEHLALYSNPTLSG-----------------EIPSSL 159 (397)
Q Consensus 128 -------------------------------~~~~~~~~~l~~L~~L~l~~n~~l~~-----------------~~p~~l 159 (397)
.+|. .|+++++|++|+|++| .+++ .+|..+
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~-~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l 485 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEEL 485 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred hhhCccccccccccccchhhceeccccCcccchhH-HHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhh
Confidence 0444 4788999999999999 7888 388887
Q ss_pred c--CCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCC-CCC-ccChhccCC-------CCCCEEEccCCCCCCCCC
Q 037919 160 A--EIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNN-LSG-EIPDEIGGM-------ISLTVLDLSWNGLQGQVP 228 (397)
Q Consensus 160 ~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l-------~~L~~L~l~~n~l~~~~~ 228 (397)
+ ++++|++|+|++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|
T Consensus 486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred hhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 7 99999999999999988999999999999999999998 887 677655444 37778888777777 667
Q ss_pred c--cccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCC-CCeeeccCCcCCCCCccccC-
Q 037919 229 P--SLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQ-LQYLIVYHNPINSRIPLFLG- 304 (397)
Q Consensus 229 ~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~- 304 (397)
. .++.+++|++|++++|.++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+.
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 6 6777777777777777776 555 5666666666666666666 55555555555 555555555554 2232222
Q ss_pred ------------------------------------------------------CCCCCCEEEcccccCCcCChhhccC-
Q 037919 305 ------------------------------------------------------TLQNLTSISVSECGLTGPIPNFFSS- 329 (397)
Q Consensus 305 ------------------------------------------------------~~~~L~~L~L~~n~l~~~~~~~~~~- 329 (397)
.+++|+.|+|++|+++ .+|..+..
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~ 719 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKP 719 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSC
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcc
Confidence 2334444444444444 33322211
Q ss_pred -------CCCCCEEeCCCCcCCcCCCcccc--CCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCc
Q 037919 330 -------LNTLTALSLDNNNLSGTVPPSLG--SLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGND 393 (397)
Q Consensus 330 -------~~~L~~L~Ls~n~l~~~~p~~~~--~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~ 393 (397)
+++|+.|+|++|+++ .+|..+. .+++ |+.|+|++|++++ +|..+..++.+ +.|++++|+
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~--L~~L~Ls~N~L~~-lp~~l~~L~~L-~~L~Ls~N~ 787 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPY--LSNMDVSYNCFSS-FPTQPLNSSQL-KAFGIRHQR 787 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTT--CCEEECCSSCCSS-CCCGGGGCTTC-CEEECCCCB
T ss_pred ccccccccCCccEEECCCCCCc-cchHHhhhccCCC--cCEEEeCCCCCCc-cchhhhcCCCC-CEEECCCCC
Confidence 125666666666665 5555555 6666 7777777777766 56666555555 667766644
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.3e-41 Score=346.85 Aligned_cols=293 Identities=33% Similarity=0.502 Sum_probs=233.9
Q ss_pred ccccccccccccC--CCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEccccc
Q 037919 97 CKISANISDALLK--LPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNN 174 (397)
Q Consensus 97 ~~~~~~~~~~l~~--l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~ 174 (397)
+.+.|.+++.+.. +++|++|++++|.+.+ ..+..+.++++|++|++++| .+.+.+|..++++++|++|++++|.
T Consensus 378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTG---KIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp SEEEEECCTTTTCSTTCCCCEEECCSSEEEE---ECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSC
T ss_pred CCcCCCcChhhhhcccCCccEEECCCCcccc---ccCHHHhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCCc
Confidence 3444444444444 5566666666665552 23344677788888888888 7777788888888888888888888
Q ss_pred CCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccc
Q 037919 175 LQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPA 254 (397)
Q Consensus 175 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 254 (397)
+.+.+|..+..+++|++|++++|++.+.+|..+.++++|++|++++|++++.+|..++.+++|++|++++|.+++.+|..
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 88778888888888888888888888778888888888888888888888888888888888888888888888888888
Q ss_pred cCCCCCCcEEEcccCCCCCCCccc--------------------------------------------------------
Q 037919 255 IGKLSRLVLLDLSQNCINGPIPET-------------------------------------------------------- 278 (397)
Q Consensus 255 l~~l~~L~~L~l~~n~l~~~~~~~-------------------------------------------------------- 278 (397)
+..+++|+.|++++|.+++.+|..
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 888888888888888777655543
Q ss_pred --------------CCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCC
Q 037919 279 --------------LSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLS 344 (397)
Q Consensus 279 --------------l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 344 (397)
+..+++|+.|++++|++++.+|..++.++.|+.|+|++|+++|.+|..++.+++|++|||++|+++
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 334577889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcCCCC
Q 037919 345 GTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDKLCT 397 (397)
Q Consensus 345 ~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~~C~ 397 (397)
|.+|..+..++. |++|++++|+++|.||....+ ..+ ....+.||+++|.
T Consensus 694 g~ip~~l~~l~~--L~~L~ls~N~l~g~iP~~~~~-~~~-~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 694 GRIPQAMSALTM--LTEIDLSNNNLSGPIPEMGQF-ETF-PPAKFLNNPGLCG 742 (768)
T ss_dssp ECCCGGGGGCCC--CSEEECCSSEEEEECCSSSSG-GGS-CGGGGCSCTEEES
T ss_pred CcCChHHhCCCC--CCEEECcCCcccccCCCchhh-ccC-CHHHhcCCchhcC
Confidence 999999999999 999999999999999976542 333 4567889999984
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.3e-40 Score=321.33 Aligned_cols=320 Identities=25% Similarity=0.247 Sum_probs=273.9
Q ss_pred ccc--eEcCCCCC---CCCcccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCC
Q 037919 66 WPG--VECEIGED---DPSIFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSL 140 (397)
Q Consensus 66 w~g--v~C~~~~~---~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L 140 (397)
|.+ |.|....- ..-..+++.|++++ +.+.+..+..+.++++|++|++++|.+.+ .+++..|.++++|
T Consensus 10 ~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--~i~~~~~~~l~~L 81 (455)
T 3v47_A 10 VIGYNAICINRGLHQVPELPAHVNYVDLSL------NSIAELNETSFSRLQDLQFLKVEQQTPGL--VIRNNTFRGLSSL 81 (455)
T ss_dssp EETTEEECCSSCCSSCCCCCTTCCEEECCS------SCCCEECTTTTSSCTTCCEEECCCCSTTC--EECTTTTTTCTTC
T ss_pred EEccccCcCCCCcccCCCCCCccCEEEecC------CccCcCChhHhccCccccEEECcCCcccc--eECcccccccccC
Confidence 555 88865320 11235789999997 67888888999999999999999998865 6777789999999
Q ss_pred CEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchh--hcCCCCCCEEeeecCCCCCccChh-ccCCCCCCEEE
Q 037919 141 EHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKE--LGRLVNLEQLDLSYNNLSGEIPDE-IGGMISLTVLD 217 (397)
Q Consensus 141 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~ 217 (397)
++|++++| .+.+..|..++++++|++|++++|.+++.++.. +..+++|++|++++|.+.+..|.. +.++++|++|+
T Consensus 82 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 82 IILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 99999999 888888999999999999999999998766655 889999999999999999877776 88999999999
Q ss_pred ccCCCCCCCCCccccCC----------------------------------ccCceeeccCCcCCCCCccccC-------
Q 037919 218 LSWNGLQGQVPPSLGTL----------------------------------QLLQKIDLGSNKLVGSIPPAIG------- 256 (397)
Q Consensus 218 l~~n~l~~~~~~~l~~l----------------------------------~~L~~L~l~~n~l~~~~~~~l~------- 256 (397)
+++|.+.+..+..+..+ ++|++|++++|.+.+..+..+.
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 240 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence 99999988777665543 6788888888877653332221
Q ss_pred --------------------------------CCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccC
Q 037919 257 --------------------------------KLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLG 304 (397)
Q Consensus 257 --------------------------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 304 (397)
..++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+.
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 320 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence 125789999999999988888999999999999999999998888999
Q ss_pred CCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhcc
Q 037919 305 TLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLG 384 (397)
Q Consensus 305 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~ 384 (397)
.+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++ |++|++++|++++..+..+..++.+
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~l~~L- 397 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN--LKELALDTNQLKSVPDGIFDRLTSL- 397 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT--CCEEECCSSCCSCCCTTTTTTCTTC-
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc--ccEEECCCCccccCCHhHhccCCcc-
Confidence 9999999999999999888999999999999999999999888999999999 9999999999997655555566777
Q ss_pred ceEeccCCcCCCC
Q 037919 385 ERLDVRGNDKLCT 397 (397)
Q Consensus 385 ~~l~l~~N~~~C~ 397 (397)
++|++++|++.|+
T Consensus 398 ~~L~l~~N~l~~~ 410 (455)
T 3v47_A 398 QKIWLHTNPWDCS 410 (455)
T ss_dssp CEEECCSSCBCCC
T ss_pred cEEEccCCCcccC
Confidence 8999999999996
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.7e-39 Score=315.33 Aligned_cols=327 Identities=22% Similarity=0.205 Sum_probs=286.9
Q ss_pred CCCCCC-CCccceEcCCCC----CCCCcccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChh
Q 037919 58 PEPCTE-TPWPGVECEIGE----DDPSIFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPT 132 (397)
Q Consensus 58 ~~~c~~-~~w~gv~C~~~~----~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~ 132 (397)
+..|.+ ..|..|.|.... ...-..+++.|++++ +.+.+..+..|.++++|++|++++|.+. .+.+.
T Consensus 4 p~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~ 74 (477)
T 2id5_A 4 PPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGK------NRIKTLNQDEFASFPHLEELELNENIVS---AVEPG 74 (477)
T ss_dssp STTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCS------SCCCEECTTTTTTCTTCCEEECTTSCCC---EECTT
T ss_pred cCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCC------CccceECHhHccCCCCCCEEECCCCccC---EeChh
Confidence 445653 347889997532 111234788899987 6778888889999999999999999887 56677
Q ss_pred hhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCC
Q 037919 133 LFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMIS 212 (397)
Q Consensus 133 ~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 212 (397)
.|.++++|++|++++| .+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 75 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 153 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153 (477)
T ss_dssp TTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred hhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC
Confidence 7899999999999999 788776777899999999999999999888889999999999999999999888889999999
Q ss_pred CCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccC
Q 037919 213 LTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYH 292 (397)
Q Consensus 213 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 292 (397)
|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|++|++++
T Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 233 (477)
T 2id5_A 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233 (477)
T ss_dssp CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence 99999999999977667799999999999999999987778899999999999999988888877777777999999999
Q ss_pred CcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccc
Q 037919 293 NPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGE 372 (397)
Q Consensus 293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~ 372 (397)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++ |+.|++++|++++.
T Consensus 234 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY--LRVLNVSGNQLTTL 311 (477)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT--CCEEECCSSCCSCC
T ss_pred CcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc--CCEEECCCCcCcee
Confidence 9998876678899999999999999999888888999999999999999999988999999999 99999999999976
Q ss_pred cCCChHHHhhccceEeccCCcCCCC
Q 037919 373 LQFPEEFIERLGERLDVRGNDKLCT 397 (397)
Q Consensus 373 ~p~~~~~~~~l~~~l~l~~N~~~C~ 397 (397)
.+..+..++.+ ++|++++|++.||
T Consensus 312 ~~~~~~~l~~L-~~L~l~~N~l~c~ 335 (477)
T 2id5_A 312 EESVFHSVGNL-ETLILDSNPLACD 335 (477)
T ss_dssp CGGGBSCGGGC-CEEECCSSCEECS
T ss_pred CHhHcCCCccc-CEEEccCCCccCc
Confidence 55555556677 8999999999996
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-36 Score=307.18 Aligned_cols=301 Identities=23% Similarity=0.268 Sum_probs=273.3
Q ss_pred cEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcC
Q 037919 82 HVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAE 161 (397)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~ 161 (397)
.++.+++++ +.+.+..+..+.++++|++|++++|.+. .+|.. +..+++|++|++++| .+.+..|..+.+
T Consensus 255 ~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~lp~~-l~~l~~L~~L~l~~n-~l~~~~~~~~~~ 323 (606)
T 3t6q_A 255 SVESINLQK------HYFFNISSNTFHCFSGLQELDLTATHLS---ELPSG-LVGLSTLKKLVLSAN-KFENLCQISASN 323 (606)
T ss_dssp EEEEEECTT------CCCSSCCTTTTTTCTTCSEEECTTSCCS---CCCSS-CCSCTTCCEEECTTC-CCSBGGGGCGGG
T ss_pred ceeEEEeec------CccCccCHHHhccccCCCEEeccCCccC---CCChh-hcccccCCEEECccC-CcCcCchhhhhc
Confidence 788999987 6777777778999999999999999887 56654 689999999999999 888888889999
Q ss_pred CCCCCEEEcccccCCCCCchh-hcCCCCCCEEeeecCCCCCcc--ChhccCCCCCCEEEccCCCCCCCCCccccCCccCc
Q 037919 162 IADLRVLSLSQNNLQGNIPKE-LGRLVNLEQLDLSYNNLSGEI--PDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQ 238 (397)
Q Consensus 162 l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 238 (397)
+++|++|++++|.+.+.++.. +..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence 999999999999998776654 889999999999999998665 77899999999999999999988888999999999
Q ss_pred eeeccCCcCCCCCcc-ccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCC---CccccCCCCCCCEEEc
Q 037919 239 KIDLGSNKLVGSIPP-AIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSR---IPLFLGTLQNLTSISV 314 (397)
Q Consensus 239 ~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~L 314 (397)
+|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|.+++. .+..+..+++|++|++
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 999999999877654 488999999999999999988889999999999999999999763 2356888999999999
Q ss_pred ccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcC
Q 037919 315 SECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDK 394 (397)
Q Consensus 315 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~ 394 (397)
++|++++..|..+..+++|++|++++|++++..|..+..++. | .|++++|++++..|..+..++.+ ++|++++||+
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~--L-~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~ 559 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG--I-YLNLASNHISIILPSLLPILSQQ-RTINLRQNPL 559 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS--C-EEECCSSCCCCCCGGGHHHHHTS-SEEECTTCCE
T ss_pred CCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc--c-EEECcCCcccccCHhhcccCCCC-CEEeCCCCCc
Confidence 999999988999999999999999999999999999999999 9 99999999998888878888888 8999999999
Q ss_pred CCC
Q 037919 395 LCT 397 (397)
Q Consensus 395 ~C~ 397 (397)
.||
T Consensus 560 ~c~ 562 (606)
T 3t6q_A 560 DCT 562 (606)
T ss_dssp ECS
T ss_pred ccc
Confidence 996
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.8e-36 Score=302.46 Aligned_cols=140 Identities=23% Similarity=0.288 Sum_probs=111.1
Q ss_pred ccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCC-CCccccCCCCCCCEEEcccccCCcCChhhccCCCC
Q 037919 254 AIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINS-RIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNT 332 (397)
Q Consensus 254 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 332 (397)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 44455566666666666665566667777777777777777766 35777888888999999999888888888889999
Q ss_pred CCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhh-ccceEeccCCcCCCC
Q 037919 333 LTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIER-LGERLDVRGNDKLCT 397 (397)
Q Consensus 333 L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~-l~~~l~l~~N~~~C~ 397 (397)
|++|++++|++++..|..+..+++ |+.|++++|+++ .+|..+..+++ + ++|++++|++.|+
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~-~~p~~~~~l~~~L-~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYS--LSTLDCSFNRIE-TSKGILQHFPKSL-AFFNLTNNSVACI 560 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTT--CCEEECTTSCCC-CEESCGGGSCTTC-CEEECCSCCCCCS
T ss_pred CCEEECCCCcCCCcCHHHccCCCc--CCEEECCCCcCc-ccCHhHhhhcccC-cEEEccCCCcccC
Confidence 999999999999888888999998 999999999998 67776655543 5 8999999999996
No 10
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.3e-35 Score=293.52 Aligned_cols=297 Identities=21% Similarity=0.228 Sum_probs=212.4
Q ss_pred ccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhc
Q 037919 81 FHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLA 160 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~ 160 (397)
.+++.|++++ +.+.+..+..|.++++|++|++++|.+. .++++.|.++++|++|++++| .+. .+|..
T Consensus 52 ~~L~~L~Ls~------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N-~l~-~lp~~-- 118 (562)
T 3a79_B 52 PRTKALSLSQ------NSISELRMPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVSHN-RLQ-NISCC-- 118 (562)
T ss_dssp TTCCEEECCS------SCCCCCCGGGTTTCTTCCEEECCSCCCC---EECTTTTTTCTTCCEEECTTS-CCC-EECSC--
T ss_pred CCcCEEECCC------CCccccChhhhccCCCccEEECCCCCCC---cCCHHHhCCCCCCCEEECCCC-cCC-ccCcc--
Confidence 4788888887 5667767778888888888888888877 566667788888888888888 666 45554
Q ss_pred CCCCCCEEEcccccCCC-CCchhhcCCCCCCEEeeecCCCCCc-------------------------cChhccCCC---
Q 037919 161 EIADLRVLSLSQNNLQG-NIPKELGRLVNLEQLDLSYNNLSGE-------------------------IPDEIGGMI--- 211 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~-------------------------~~~~l~~l~--- 211 (397)
.+++|++|++++|.+++ .+|..+.++++|++|++++|.+.+. .|..+..+.
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~ 198 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEE
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcce
Confidence 67888888888888775 3456777777888887777776532 121111111
Q ss_pred ------------------------------------------------------------------------------CC
Q 037919 212 ------------------------------------------------------------------------------SL 213 (397)
Q Consensus 212 ------------------------------------------------------------------------------~L 213 (397)
+|
T Consensus 199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L 278 (562)
T 3a79_B 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278 (562)
T ss_dssp EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence 34
Q ss_pred CEEEccCCCCCCCCCccc-----------------------------------------------------cCCccCcee
Q 037919 214 TVLDLSWNGLQGQVPPSL-----------------------------------------------------GTLQLLQKI 240 (397)
Q Consensus 214 ~~L~l~~n~l~~~~~~~l-----------------------------------------------------~~l~~L~~L 240 (397)
++|++++|.+++.+|..+ ..+++|++|
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L 358 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEE
Confidence 444444444444444333 455667777
Q ss_pred eccCCcCCCCCccccCCCCCCcEEEcccCCCCC--CCcccCCCCCCCCeeeccCCcCCCCCc-cccCCCCCCCEEEcccc
Q 037919 241 DLGSNKLVGSIPPAIGKLSRLVLLDLSQNCING--PIPETLSGLQQLQYLIVYHNPINSRIP-LFLGTLQNLTSISVSEC 317 (397)
Q Consensus 241 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n 317 (397)
++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+| ..+..+++|++|++++|
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 777777776666677777777777777777765 234556777777777777777766333 34666777777777777
Q ss_pred cCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCC-hHHHhhccceEeccCCcCCC
Q 037919 318 GLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFP-EEFIERLGERLDVRGNDKLC 396 (397)
Q Consensus 318 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~-~~~~~~l~~~l~l~~N~~~C 396 (397)
++++.+|..+. ++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|.. +..++.+ ++|++++|+|.|
T Consensus 439 ~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~--L~~L~L~~N~l~-~l~~~~~~~l~~L-~~L~l~~N~~~c 511 (562)
T 3a79_B 439 MLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA--LQELNVASNQLK-SVPDGVFDRLTSL-QYIWLHDNPWDC 511 (562)
T ss_dssp CCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCC--CSEEECCSSCCC-CCCTTSTTTCTTC-CCEECCSCCBCC
T ss_pred CCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCC--CCEEECCCCCCC-CCCHHHHhcCCCC-CEEEecCCCcCC
Confidence 77766665543 68999999999888 78887789999 999999999999 57765 5556677 899999999999
Q ss_pred C
Q 037919 397 T 397 (397)
Q Consensus 397 ~ 397 (397)
|
T Consensus 512 ~ 512 (562)
T 3a79_B 512 T 512 (562)
T ss_dssp C
T ss_pred C
Confidence 6
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=291.92 Aligned_cols=159 Identities=22% Similarity=0.285 Sum_probs=124.6
Q ss_pred cCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCC--CCcccCCCCCCCCeeeccCCcCCCCCcc-ccCCCCC
Q 037919 232 GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCING--PIPETLSGLQQLQYLIVYHNPINSRIPL-FLGTLQN 308 (397)
Q Consensus 232 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~ 308 (397)
..+++|++|++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 456677777777777777677777777788888888887775 4556677778888888888887774443 4677788
Q ss_pred CCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCC-hHHHhhccceE
Q 037919 309 LTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFP-EEFIERLGERL 387 (397)
Q Consensus 309 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~-~~~~~~l~~~l 387 (397)
|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++ |++|++++|+++ .+|.. +..++.+ ++|
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~--L~~L~L~~N~l~-~l~~~~~~~l~~L-~~L 473 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEA--LQELNVASNQLK-SVPDGIFDRLTSL-QKI 473 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTT--CCEEECCSSCCC-CCCTTTTTTCTTC-CEE
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCC--CCEEECCCCcCC-ccCHHHhccCCcc-cEE
Confidence 88888888888777766554 68999999999998 78888889999 999999999998 56765 5556677 899
Q ss_pred eccCCcCCCC
Q 037919 388 DVRGNDKLCT 397 (397)
Q Consensus 388 ~l~~N~~~C~ 397 (397)
++++|++.|+
T Consensus 474 ~l~~N~~~c~ 483 (520)
T 2z7x_B 474 WLHTNPWDCS 483 (520)
T ss_dssp ECCSSCBCCC
T ss_pred ECcCCCCccc
Confidence 9999999996
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.4e-35 Score=292.56 Aligned_cols=314 Identities=24% Similarity=0.275 Sum_probs=194.1
Q ss_pred ccceEcCCCCC------CCCcccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCC
Q 037919 66 WPGVECEIGED------DPSIFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSS 139 (397)
Q Consensus 66 w~gv~C~~~~~------~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~ 139 (397)
|.|+ |+.... .....+++.|++++ +.+++..+..+.++++|++|++++|.+. .+++..|.++++
T Consensus 6 ~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~ 75 (549)
T 2z81_A 6 ASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF------NKITYIGHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGS 75 (549)
T ss_dssp TTSE-EECTTSCCSSCCSCCCTTCCEEECCS------SCCCEECSSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTT
T ss_pred CCce-EECCCCccccccccCCCCccEEECcC------CccCccChhhhhcCCcccEEECCCCCcC---ccChhhcccccc
Confidence 9888 864311 11224789999987 5667777777888888888888888776 456666778888
Q ss_pred CCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCC-CCchhhcCCCCCCEEeeecCCCCCccC-hhccCCCCCCEEE
Q 037919 140 LEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQG-NIPKELGRLVNLEQLDLSYNNLSGEIP-DEIGGMISLTVLD 217 (397)
Q Consensus 140 L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~ 217 (397)
|++|++++| .+.+..|..++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+.++++|++|+
T Consensus 76 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 76 LEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp CCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence 888888888 7777777777788888888888887764 345556666666666666666333333 3455555555555
Q ss_pred ccCCCCCCCCCccccC------------------------CccCceeeccCCcCCCC-----------------------
Q 037919 218 LSWNGLQGQVPPSLGT------------------------LQLLQKIDLGSNKLVGS----------------------- 250 (397)
Q Consensus 218 l~~n~l~~~~~~~l~~------------------------l~~L~~L~l~~n~l~~~----------------------- 250 (397)
+++|.+++..|..++. +++|++|++++|.+++.
T Consensus 155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred ccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 5555444333332221 22333333333332221
Q ss_pred --------------------------------------------------------------------------------
Q 037919 251 -------------------------------------------------------------------------------- 250 (397)
Q Consensus 251 -------------------------------------------------------------------------------- 250 (397)
T Consensus 235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~ 314 (549)
T 2z81_A 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314 (549)
T ss_dssp EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCE
T ss_pred cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceE
Confidence
Q ss_pred ----------Ccccc-CCCCCCcEEEcccCCCCCCCc-----------------------------ccCCCCCCCCeeec
Q 037919 251 ----------IPPAI-GKLSRLVLLDLSQNCINGPIP-----------------------------ETLSGLQQLQYLIV 290 (397)
Q Consensus 251 ----------~~~~l-~~l~~L~~L~l~~n~l~~~~~-----------------------------~~l~~l~~L~~L~L 290 (397)
+|..+ ..+++|++|++++|.+++.+| ..+..+++|++|++
T Consensus 315 L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~L 394 (549)
T 2z81_A 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394 (549)
T ss_dssp EEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEEC
T ss_pred EEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEEC
Confidence 11111 124445555555555443321 22444555555555
Q ss_pred cCCcCCCCCccccCCCCCCCEEEcccccCCcCChhh------------------ccCCCCCCEEeCCCCcCCcCCCcccc
Q 037919 291 YHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNF------------------FSSLNTLTALSLDNNNLSGTVPPSLG 352 (397)
Q Consensus 291 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~------------------~~~~~~L~~L~Ls~n~l~~~~p~~~~ 352 (397)
++|++++ +|..+..+++|++|++++|++++ +|.. +..+++|++|++++|+++ .+|. ..
T Consensus 395 s~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~ 470 (549)
T 2z81_A 395 SRNTFHP-MPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-AS 470 (549)
T ss_dssp TTCCCCC-CCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred CCCCCcc-CChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cc
Confidence 5555542 44445555555555555555542 1111 125677888888888887 5665 45
Q ss_pred CCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcCCCC
Q 037919 353 SLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDKLCT 397 (397)
Q Consensus 353 ~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~~C~ 397 (397)
.++. |++|++++|++++..|..+..++.+ ++|++++|++.|+
T Consensus 471 ~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~~~ 512 (549)
T 2z81_A 471 LFPV--LLVMKISRNQLKSVPDGIFDRLTSL-QKIWLHTNPWDCS 512 (549)
T ss_dssp GCTT--CCEEECCSSCCCCCCTTGGGGCTTC-CEEECCSSCBCCC
T ss_pred cCcc--CCEEecCCCccCCcCHHHHhcCccc-CEEEecCCCccCC
Confidence 6788 9999999999998888777777777 8999999999996
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-35 Score=287.19 Aligned_cols=285 Identities=22% Similarity=0.262 Sum_probs=243.7
Q ss_pred cccEEEEEcCCCCCCCCccccccc-cccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchh
Q 037919 80 IFHVTKVHIGPDIITPTCKISANI-SDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSS 158 (397)
Q Consensus 80 ~~~v~~l~l~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~ 158 (397)
..+++.|++++ +.+.+.+ +..|.++++|++|++++|.+. .+++..|+++++|++|++++| .+.+..+..
T Consensus 53 l~~L~~L~L~~------n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 122 (455)
T 3v47_A 53 LQDLQFLKVEQ------QTPGLVIRNNTFRGLSSLIILKLDYNQFL---QLETGAFNGLANLEVLTLTQC-NLDGAVLSG 122 (455)
T ss_dssp CTTCCEEECCC------CSTTCEECTTTTTTCTTCCEEECTTCTTC---EECTTTTTTCTTCCEEECTTS-CCBTHHHHS
T ss_pred CccccEEECcC------CcccceECcccccccccCCEEeCCCCccC---ccChhhccCcccCCEEeCCCC-CCCccccCc
Confidence 34788888886 5566555 457889999999999999887 556667899999999999999 788766655
Q ss_pred --hcCCCCCCEEEcccccCCCCCchh-hcCCCCCCEEeeecCCCCCccChhccCC-------------------------
Q 037919 159 --LAEIADLRVLSLSQNNLQGNIPKE-LGRLVNLEQLDLSYNNLSGEIPDEIGGM------------------------- 210 (397)
Q Consensus 159 --l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l------------------------- 210 (397)
+.++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~ 202 (455)
T 3v47_A 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202 (455)
T ss_dssp STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH
T ss_pred ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc
Confidence 889999999999999998777766 7889999999999999887766655433
Q ss_pred ---------CCCCEEEccCCCCCCCCCcccc---------------------------------------CCccCceeec
Q 037919 211 ---------ISLTVLDLSWNGLQGQVPPSLG---------------------------------------TLQLLQKIDL 242 (397)
Q Consensus 211 ---------~~L~~L~l~~n~l~~~~~~~l~---------------------------------------~l~~L~~L~l 242 (397)
++|++|++++|.+.+..+..+. ..++|++|++
T Consensus 203 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 282 (455)
T 3v47_A 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282 (455)
T ss_dssp HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEEC
T ss_pred cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEe
Confidence 6788888888877654333221 1268999999
Q ss_pred cCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcC
Q 037919 243 GSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGP 322 (397)
Q Consensus 243 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 322 (397)
++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 283 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEE
T ss_pred cCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccccc
Confidence 99999988899999999999999999999988888999999999999999999988889999999999999999999988
Q ss_pred ChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCC
Q 037919 323 IPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFP 376 (397)
Q Consensus 323 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~ 376 (397)
.|..+..+++|++|++++|++++..+..+..+++ |++|++++|++++..|.-
T Consensus 363 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT--CCEEECCSSCBCCCTTTT
T ss_pred ChhhccccccccEEECCCCccccCCHhHhccCCc--ccEEEccCCCcccCCCcc
Confidence 8999999999999999999999766677889999 999999999999999853
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=283.37 Aligned_cols=303 Identities=22% Similarity=0.249 Sum_probs=268.8
Q ss_pred cccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhh
Q 037919 80 IFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSL 159 (397)
Q Consensus 80 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l 159 (397)
..+++.|++++ +.+.+..+..|.++++|++|++++|.+. .++...|.++++|++|++++| .+.+..+..+
T Consensus 55 l~~L~~L~L~~------n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~ 124 (477)
T 2id5_A 55 FPHLEELELNE------NIVSAVEPGAFNNLFNLRTLGLRSNRLK---LIPLGVFTGLSNLTKLDISEN-KIVILLDYMF 124 (477)
T ss_dssp CTTCCEEECTT------SCCCEECTTTTTTCTTCCEEECCSSCCC---SCCTTSSTTCTTCCEEECTTS-CCCEECTTTT
T ss_pred CCCCCEEECCC------CccCEeChhhhhCCccCCEEECCCCcCC---ccCcccccCCCCCCEEECCCC-ccccCChhHc
Confidence 35788999987 6778888899999999999999999987 678888899999999999999 8888889999
Q ss_pred cCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCce
Q 037919 160 AEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQK 239 (397)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 239 (397)
.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++
T Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 204 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204 (477)
T ss_dssp TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCE
T ss_pred cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccce
Confidence 99999999999999999888888999999999999999999776778999999999999999999877788999999999
Q ss_pred eeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccC
Q 037919 240 IDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGL 319 (397)
Q Consensus 240 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 319 (397)
|++++|...+.++.......+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp EEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred eeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 99999988877777777777999999999999965556789999999999999999988888899999999999999999
Q ss_pred CcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcCCC
Q 037919 320 TGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDKLC 396 (397)
Q Consensus 320 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~~C 396 (397)
++..|..|..+++|++|++++|++++..+..+..+++ |+.|++++|++.+..+.. +.......+++.+++..|
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~c~c~~~--~~~~~~~~~~~~~~~~~C 357 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN--LETLILDSNPLACDCRLL--WVFRRRWRLNFNRQQPTC 357 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG--CCEEECCSSCEECSGGGH--HHHTTTTSSCCTTCCCBE
T ss_pred ceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc--cCEEEccCCCccCccchH--hHHhhhhccccCccCcee
Confidence 9988999999999999999999999877777889999 999999999998765532 222221345666777766
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.4e-34 Score=290.68 Aligned_cols=171 Identities=19% Similarity=0.127 Sum_probs=119.7
Q ss_pred ccceEcCCCC----CCCCcccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCC
Q 037919 66 WPGVECEIGE----DDPSIFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLE 141 (397)
Q Consensus 66 w~gv~C~~~~----~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~ 141 (397)
+..|.|.... ...-..+++.|++++ +.+++..+..|.++++|++|++++|.+. .+.+..|+++++|+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~ 84 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSF------NVLPTIQNTTFSRLINLTFLDLTRCQIY---WIHEDTFQSQHRLD 84 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTT------CCCSEECTTTSTTCTTCSEEECTTCCCC---EECTTTTTTCTTCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccC------CccCcCChhHhccCccceEEECCCCccc---eeChhhccCccccC
Confidence 4567886432 111234789999987 6777777888889999999999988876 56666788888888
Q ss_pred EEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCC
Q 037919 142 HLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWN 221 (397)
Q Consensus 142 ~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 221 (397)
+|++++| .+.+..|..++++++|++|++++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|
T Consensus 85 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 85 TLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp EEECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred eeeCCCC-cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence 8888888 777777888888888888888888887655666777777888888877777533233344677777777776
Q ss_pred CCCCCCCccccCCccCc--eeeccCCc
Q 037919 222 GLQGQVPPSLGTLQLLQ--KIDLGSNK 246 (397)
Q Consensus 222 ~l~~~~~~~l~~l~~L~--~L~l~~n~ 246 (397)
.+++..+..++.+++|+ +|++++|.
T Consensus 164 ~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 164 AIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp CCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred cccccChhhhhhhcccceeEEecCCCc
Confidence 66654444444444444 44444443
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.8e-35 Score=278.57 Aligned_cols=292 Identities=20% Similarity=0.188 Sum_probs=232.1
Q ss_pred ccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhc
Q 037919 81 FHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLA 160 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~ 160 (397)
.+++.+++++ +.+....+..+..+++|++|++++|.+. .+++..|..+++|++|++++| .+.+..|..++
T Consensus 45 ~~l~~l~l~~------~~l~~l~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 114 (390)
T 3o6n_A 45 NNQKIVTFKN------STMRKLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQ 114 (390)
T ss_dssp CCCSEEEEES------CEESEECTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCceEEEecC------CchhhCChhHhcccccCcEEECCCCccc---ccChhhccCCCCcCEEECCCC-CCCcCCHHHhc
Confidence 4556666664 3444444445788999999999999887 677777899999999999999 88888888899
Q ss_pred CCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCcee
Q 037919 161 EIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKI 240 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 240 (397)
++++|++|++++|.++...+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++.. +..+++|++|
T Consensus 115 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L 191 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHA 191 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEE
T ss_pred CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---ccccccccee
Confidence 9999999999999998444444688999999999999999877888999999999999999987542 3444555555
Q ss_pred eccCCcCCC------------------CCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccc
Q 037919 241 DLGSNKLVG------------------SIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLF 302 (397)
Q Consensus 241 ~l~~n~l~~------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 302 (397)
++++|.+++ .++. ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..
T Consensus 192 ~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 192 NVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp ECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 554444332 1121 2246788888888888754 56788899999999999999888888
Q ss_pred cCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhh
Q 037919 303 LGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIER 382 (397)
Q Consensus 303 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~ 382 (397)
+..+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++ |++|++++|++++. | ...++.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~--L~~L~L~~N~i~~~-~--~~~~~~ 340 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR--LENLYLDHNSIVTL-K--LSTHHT 340 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT--CSEEECCSSCCCCC-C--CCTTCC
T ss_pred ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCc--CCEEECCCCcccee-C--chhhcc
Confidence 9999999999999999984 5666788899999999999998 67777888888 99999999999754 3 334566
Q ss_pred ccceEeccCCcCCCC
Q 037919 383 LGERLDVRGNDKLCT 397 (397)
Q Consensus 383 l~~~l~l~~N~~~C~ 397 (397)
+ ++|++++|++.|+
T Consensus 341 L-~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 341 L-KNLTLSHNDWDCN 354 (390)
T ss_dssp C-SEEECCSSCEEHH
T ss_pred C-CEEEcCCCCccch
Confidence 6 8999999999884
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=301.66 Aligned_cols=311 Identities=23% Similarity=0.254 Sum_probs=233.4
Q ss_pred CCccceEcCCCCCCCCcccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEE
Q 037919 64 TPWPGVECEIGEDDPSIFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHL 143 (397)
Q Consensus 64 ~~w~gv~C~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L 143 (397)
..|..|.+ . ..+++.|++++ +.+++..+..|.++++|++|++++|.... .+++..|+++++|++|
T Consensus 14 ~~L~~vP~-l------p~~l~~LdLs~------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~--~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 14 CNLTQVPQ-V------LNTTERLLLSF------NYIRTVTASSFPFLEQLQLLELGSQYTPL--TIDKEAFRNLPNLRIL 78 (844)
T ss_dssp CCSSCCCS-S------CTTCCEEEEES------CCCCEECSSSCSSCCSCSEEEECTTCCCC--EECTTTTSSCTTCCEE
T ss_pred CCCCCCCC-C------CCCcCEEECCC------CcCCccChhHCcccccCeEEeCCCCCCcc--ccCHHHhcCCCCCCEE
Confidence 34666655 2 35899999987 67888888999999999999999996554 6777889999999999
Q ss_pred eCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchh--hcCCCCCCEEeeecCCCCCccC-hhccCCCCCCEEEccC
Q 037919 144 ALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKE--LGRLVNLEQLDLSYNNLSGEIP-DEIGGMISLTVLDLSW 220 (397)
Q Consensus 144 ~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~ 220 (397)
+|++| .+.+..|..|.++++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+..+ ..+.++++|++|++++
T Consensus 79 ~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 79 DLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp ECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred ECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 99999 889888999999999999999999999877765 8899999999999999987654 5789999999999999
Q ss_pred CCCCCCCCccccCC--ccCceeeccCCcCCCCCccccCCCCC------CcEEEcccCCCCCCCcccCC------------
Q 037919 221 NGLQGQVPPSLGTL--QLLQKIDLGSNKLVGSIPPAIGKLSR------LVLLDLSQNCINGPIPETLS------------ 280 (397)
Q Consensus 221 n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~l~------------ 280 (397)
|.+++..+..+..+ ++|+.|++++|.+.+..+..++.+++ |+.|++++|.+++..+..+.
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 99988888777766 77888888888777766655555444 77777777765543332211
Q ss_pred ------------------------C--CCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCC
Q 037919 281 ------------------------G--LQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLT 334 (397)
Q Consensus 281 ------------------------~--l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 334 (397)
. .++|++|++++|.+.+..+..+..+++|+.|++++|++++..|..|..+++|+
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 1 14566777777766666666666667777777777777666666666667777
Q ss_pred EEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCc
Q 037919 335 ALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGND 393 (397)
Q Consensus 335 ~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~ 393 (397)
+|++++|.+++..|..+..+++ |+.|++++|++++..+..+..++.+ ++|++++|+
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~--L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~Ls~N~ 373 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPK--VAYIDLQKNHIAIIQDQTFKFLEKL-QTLDLRDNA 373 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTT--CCEEECCSCCCCCCCSSCSCSCCCC-CEEEEETCC
T ss_pred EEECCCCCCCccCHHHhcCCCC--CCEEECCCCCCCccChhhhcCCCCC-CEEECCCCC
Confidence 7777777766666666666666 7777777776665555444444555 566666665
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.6e-34 Score=289.49 Aligned_cols=318 Identities=23% Similarity=0.305 Sum_probs=242.4
Q ss_pred cceEcCCCC--C--CCCcccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCE
Q 037919 67 PGVECEIGE--D--DPSIFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEH 142 (397)
Q Consensus 67 ~gv~C~~~~--~--~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~ 142 (397)
..|.|.... . ..-...++.|+|++ +.+++..+.+|.++++|++|+|++|.+. .+++++|+++++|++
T Consensus 34 ~~~~c~~~~l~~vP~~lp~~~~~LdLs~------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~ 104 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLPFSTKNLDLSF------NPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLST 104 (635)
T ss_dssp TEEECTTSCCSSCCSSSCTTCCEEECTT------SCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCE
T ss_pred CEEECCCCCcCccCCCCCcCCCEEEeeC------CCCCCCCHHHHhCCCCCCEEECCCCcCC---CcChhHhcCCCCCCE
Confidence 357786432 1 11234789999997 6778777789999999999999999987 688888999999999
Q ss_pred EeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCC-ccChhccCCCCCCEEEccCC
Q 037919 143 LALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSG-EIPDEIGGMISLTVLDLSWN 221 (397)
Q Consensus 143 L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n 221 (397)
|+|++| .+.+..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+.+ ..|..+..+++|++|++++|
T Consensus 105 L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 105 LILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp EECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 999999 8888777889999999999999999987666678999999999999999875 46788889999999999988
Q ss_pred CCCCCCCccccCC-------------------------------------------------------------------
Q 037919 222 GLQGQVPPSLGTL------------------------------------------------------------------- 234 (397)
Q Consensus 222 ~l~~~~~~~l~~l------------------------------------------------------------------- 234 (397)
++++..+..+..+
T Consensus 184 ~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred cccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 7764332221110
Q ss_pred ----------------------------------------------------------------ccCceeeccCCcCCCC
Q 037919 235 ----------------------------------------------------------------QLLQKIDLGSNKLVGS 250 (397)
Q Consensus 235 ----------------------------------------------------------------~~L~~L~l~~n~l~~~ 250 (397)
..++.|++.+|.+.+.
T Consensus 264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 343 (635)
T 4g8a_A 264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 343 (635)
T ss_dssp SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSC
T ss_pred ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCc
Confidence 0122222222211100
Q ss_pred C-------------------------------------------------------------------------------
Q 037919 251 I------------------------------------------------------------------------------- 251 (397)
Q Consensus 251 ~------------------------------------------------------------------------------- 251 (397)
.
T Consensus 344 ~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 423 (635)
T 4g8a_A 344 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLE 423 (635)
T ss_dssp CCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCC
T ss_pred CcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccccccc
Confidence 0
Q ss_pred --------------ccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcC-CCCCccccCCCCCCCEEEccc
Q 037919 252 --------------PPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPI-NSRIPLFLGTLQNLTSISVSE 316 (397)
Q Consensus 252 --------------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~L~~L~L~~ 316 (397)
...+..+++++.++++.|.+.+..+..+..++.|+.|++++|.+ .+..|..+..+++|++|+|++
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC
Confidence 00111222333333333333334445556677888888888874 445677889999999999999
Q ss_pred ccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHH-hhccceEeccCCcCC
Q 037919 317 CGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFI-ERLGERLDVRGNDKL 395 (397)
Q Consensus 317 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~-~~l~~~l~l~~N~~~ 395 (397)
|++++..|..|.++++|++|+|++|++++..|..+..+++ |++|++++|+|++..|..+..+ +.+ ++|++++|||.
T Consensus 504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~l~~l~~~L-~~L~L~~Np~~ 580 (635)
T 4g8a_A 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS--LQVLDYSLNHIMTSKKQELQHFPSSL-AFLNLTQNDFA 580 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT--CCEEECTTSCCCBCCSSCTTCCCTTC-CEEECTTCCBC
T ss_pred CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC--CCEEECCCCcCCCCCHHHHHhhhCcC-CEEEeeCCCCc
Confidence 9999989999999999999999999999888889999999 9999999999999999887655 456 89999999999
Q ss_pred CC
Q 037919 396 CT 397 (397)
Q Consensus 396 C~ 397 (397)
||
T Consensus 581 C~ 582 (635)
T 4g8a_A 581 CT 582 (635)
T ss_dssp CS
T ss_pred cc
Confidence 97
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=288.09 Aligned_cols=140 Identities=22% Similarity=0.307 Sum_probs=114.7
Q ss_pred cCCCCCCcEEEcccCCCCCCCc-ccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCC-cCChhhccCCCC
Q 037919 255 IGKLSRLVLLDLSQNCINGPIP-ETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLT-GPIPNFFSSLNT 332 (397)
Q Consensus 255 l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~ 332 (397)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 3344555555555555554433 35677788888888888888777888888999999999999987 578888999999
Q ss_pred CCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcCCCC
Q 037919 333 LTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDKLCT 397 (397)
Q Consensus 333 L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~~C~ 397 (397)
|++|++++|++++..|..+..+++ |++|++++|++++..|..+..++.+ +.|++++|++.|+
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~N~~~~~ 533 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSS--LQVLNMASNQLKSVPDGIFDRLTSL-QKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTT--CCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCBCCC
T ss_pred CCEEECCCCccccCChhhhhcccC--CCEEeCCCCcCCCCCHHHhhcccCC-cEEEecCCcccCC
Confidence 999999999999888999999999 9999999999998887777667777 8999999999996
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-33 Score=289.87 Aligned_cols=261 Identities=28% Similarity=0.338 Sum_probs=193.0
Q ss_pred hhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEccccc----------------------------CCCCCchhhc
Q 037919 133 LFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNN----------------------------LQGNIPKELG 184 (397)
Q Consensus 133 ~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~----------------------------l~~~~~~~l~ 184 (397)
.|+.+++|++|++++| .+.+..+..+.++++|++|++++|. +.+..|..+.
T Consensus 324 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 3455666666666666 5666555566666666666555443 3333444555
Q ss_pred CCCCCCEEeeecCCCCCccC-hhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCC--CCCccccCCCCCC
Q 037919 185 RLVNLEQLDLSYNNLSGEIP-DEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLV--GSIPPAIGKLSRL 261 (397)
Q Consensus 185 ~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L 261 (397)
.+++|++|++++|.+.+.+| ..+.++++|++|++++|++.+..+..+..+++|++|++++|.+. +.+|..+..+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 66666666666666655444 45566666666666666666555566666777777777777665 4567788889999
Q ss_pred cEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCc--------cccCCCCCCCEEEcccccCCcCChhhccCCCCC
Q 037919 262 VLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIP--------LFLGTLQNLTSISVSECGLTGPIPNFFSSLNTL 333 (397)
Q Consensus 262 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 333 (397)
+.|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++...+..|..+++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 999999999997777778899999999999998876422 236788999999999999985445578999999
Q ss_pred CEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChH-HHhhccceEeccCCcCCCC
Q 037919 334 TALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEE-FIERLGERLDVRGNDKLCT 397 (397)
Q Consensus 334 ~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~-~~~~l~~~l~l~~N~~~C~ 397 (397)
+.|++++|++++..+..+..+++ |+.|++++|++++..|..+. .++.+ +.+++++|||.||
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~~~~~L-~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVS--LKSLNLQKNLITSVEKKVFGPAFRNL-TELDMRFNPFDCT 624 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTT--CCEEECTTSCCCBCCHHHHHHHHTTC-SEEECTTCCCCBC
T ss_pred ceeECCCCCCCcCCHhHhCCCCC--CCEEECCCCcCCccChhHhccccccc-CEEEccCCCcccC
Confidence 99999999999766667788999 99999999999987765544 45667 8999999999997
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.7e-35 Score=274.61 Aligned_cols=247 Identities=27% Similarity=0.450 Sum_probs=180.0
Q ss_pred cccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCC-CCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchh
Q 037919 80 IFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFN-CFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSS 158 (397)
Q Consensus 80 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~ 158 (397)
.-++..-.+.+.. . +|+.+.++++|++|++++ |.+.+ .+| ..|+++++|++|++++| .+.+.+|..
T Consensus 54 ~L~L~~~~l~~~~-----~----~~~~l~~l~~L~~L~L~~~n~l~~--~~p-~~l~~l~~L~~L~Ls~n-~l~~~~p~~ 120 (313)
T 1ogq_A 54 NLDLSGLNLPKPY-----P----IPSSLANLPYLNFLYIGGINNLVG--PIP-PAIAKLTQLHYLYITHT-NVSGAIPDF 120 (313)
T ss_dssp EEEEECCCCSSCE-----E----CCGGGGGCTTCSEEEEEEETTEES--CCC-GGGGGCTTCSEEEEEEE-CCEEECCGG
T ss_pred EEECCCCCccCCc-----c----cChhHhCCCCCCeeeCCCCCcccc--cCC-hhHhcCCCCCEEECcCC-eeCCcCCHH
Confidence 4567777777510 1 245788999999999995 87764 444 44799999999999999 899999999
Q ss_pred hcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCC-CCCEEEccCCCCCCCCCccccCCccC
Q 037919 159 LAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMI-SLTVLDLSWNGLQGQVPPSLGTLQLL 237 (397)
Q Consensus 159 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L 237 (397)
+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+..++ |
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 99999999999999999999999999999999999999999988998888887 888888888888777777776665 7
Q ss_pred ceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccc
Q 037919 238 QKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSEC 317 (397)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 317 (397)
++|++++|.+++..|..+..+++|+.|++++|.+++.++. +.. +++|++|++++|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~------------------------l~~L~~L~Ls~N 254 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL------------------------SKNLNGLDLRNN 254 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC------------------------CTTCCEEECCSS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc------------------------cCCCCEEECcCC
Confidence 7777777666666666666666666666666655543332 333 455555555555
Q ss_pred cCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCc
Q 037919 318 GLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQ 368 (397)
Q Consensus 318 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~ 368 (397)
++++.+|..+..+++|++|++++|+++|.+|.. ..+++ |+.+++++|+
T Consensus 255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~--L~~l~l~~N~ 302 (313)
T 1ogq_A 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQR--FDVSAYANNK 302 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGG--SCGGGTCSSS
T ss_pred cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccc--cChHHhcCCC
Confidence 555555555555555555555555555555543 44555 5555555554
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.1e-35 Score=296.16 Aligned_cols=296 Identities=22% Similarity=0.335 Sum_probs=208.1
Q ss_pred ccEEEEEcCCCCCCCCcccccc-----------------cccccc--CCCCCCEEEcCCCCCCCCCccChhhhCCCCCCC
Q 037919 81 FHVTKVHIGPDIITPTCKISAN-----------------ISDALL--KLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLE 141 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~-----------------~~~~l~--~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~ 141 (397)
.+++.|++++ +.++|. +|..+. ++++|++|++++|.+.+ .+| ..|+++++|+
T Consensus 206 ~~L~~L~Ls~------n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~ 276 (636)
T 4eco_A 206 TKLRQFYMGN------SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT--KLP-TFLKALPEMQ 276 (636)
T ss_dssp TTCCEEEEES------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS--SCC-TTTTTCSSCC
T ss_pred cCCCEEECcC------CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc--cCh-HHHhcCCCCC
Confidence 4678888886 567775 899988 99999999999998875 455 4578999999
Q ss_pred EEeCcCCCCCcc-cCchhhcCC------CCCCEEEcccccCCCCCch--hhcCCCCCCEEeeecCCCCCccChhccCCCC
Q 037919 142 HLALYSNPTLSG-EIPSSLAEI------ADLRVLSLSQNNLQGNIPK--ELGRLVNLEQLDLSYNNLSGEIPDEIGGMIS 212 (397)
Q Consensus 142 ~L~l~~n~~l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 212 (397)
+|++++|..++| .+|..++++ ++|++|++++|.++ .+|. .+.++++|++|++++|.+.|.+| .+..+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 999999932888 888888776 89999999999988 7887 88889999999999998887777 6666666
Q ss_pred CCEEEccCCCCCCCCCccccCCcc-CceeeccCCcCCCCCccccCCCC--CCcEEEcccCCCCCCCcccCC---------
Q 037919 213 LTVLDLSWNGLQGQVPPSLGTLQL-LQKIDLGSNKLVGSIPPAIGKLS--RLVLLDLSQNCINGPIPETLS--------- 280 (397)
Q Consensus 213 L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~l~--------- 280 (397)
|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+++.+|..+.
T Consensus 355 L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 355 LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 666666666655 55555555555 666666666555 4444444332 455555555555444444333
Q ss_pred ----------------------CCCCCCeeeccCCcCCCCCccccCCC-------CCCCEEEcccccCCcCChhhcc--C
Q 037919 281 ----------------------GLQQLQYLIVYHNPINSRIPLFLGTL-------QNLTSISVSECGLTGPIPNFFS--S 329 (397)
Q Consensus 281 ----------------------~l~~L~~L~L~~n~l~~~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~~~--~ 329 (397)
.+++|++|++++|.++...+..+... ++|++|++++|+++ .+|..+. .
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc
Confidence 34555555555555553222222211 26777777777777 5666665 7
Q ss_pred CCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEc------cCCcCccccCCChHHHhhccceEeccCCcC
Q 037919 330 LNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNL------SHNQLSGELQFPEEFIERLGERLDVRGNDK 394 (397)
Q Consensus 330 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l------~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~ 394 (397)
+++|+.|++++|++++ +|..+..+++ |+.|++ ++|++.+.+|..+..++.+ ++|++++|+.
T Consensus 512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~--L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l 578 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-FPTQPLNSST--LKGFGIRNQRDAQGNRTLREWPEGITLCPSL-TQLQIGSNDI 578 (636)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCSS--CCEEECCSCBCTTCCBCCCCCCTTGGGCSSC-CEEECCSSCC
T ss_pred CCCcCEEECCCCCCCC-cChhhhcCCC--CCEEECCCCcccccCcccccChHHHhcCCCC-CEEECCCCcC
Confidence 7788888888888876 7777777777 888877 4567777777777666666 7788887764
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.8e-34 Score=287.75 Aligned_cols=291 Identities=20% Similarity=0.195 Sum_probs=234.1
Q ss_pred cEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcC
Q 037919 82 HVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAE 161 (397)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~ 161 (397)
+++.+++++ +.+.+..+..+.++++|++|++++|.+. .+++..|+.+++|++|++++| .+.+..|..|++
T Consensus 52 ~l~~l~l~~------~~l~~lp~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 121 (597)
T 3oja_B 52 NQKIVTFKN------STMRKLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQN 121 (597)
T ss_dssp CCSEEEESS------CEESEECTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred CceEEEeeC------CCCCCcCHHHHccCCCCcEEECCCCCCC---CCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcC
Confidence 345555554 4555545556788999999999999887 567777899999999999999 888888888999
Q ss_pred CCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceee
Q 037919 162 IADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKID 241 (397)
Q Consensus 162 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 241 (397)
+++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+++.. ++.+++|+.|+
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~ 198 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHAN 198 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEE
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhh
Confidence 999999999999998555555789999999999999999888888999999999999999988542 34455555555
Q ss_pred ccCCcCCC------------------CCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCcccc
Q 037919 242 LGSNKLVG------------------SIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL 303 (397)
Q Consensus 242 l~~n~l~~------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 303 (397)
+++|.+++ .++.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+
T Consensus 199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp CCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 55554432 11111 235788888888888763 668889999999999999999888899
Q ss_pred CCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhc
Q 037919 304 GTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERL 383 (397)
Q Consensus 304 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l 383 (397)
..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++ |+.|++++|++++. | ...++.+
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~--L~~L~L~~N~l~~~-~--~~~~~~L 347 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR--LENLYLDHNSIVTL-K--LSTHHTL 347 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT--CSEEECCSSCCCCC-C--CCTTCCC
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCC--CCEEECCCCCCCCc-C--hhhcCCC
Confidence 999999999999999985 6777788999999999999998 68888888898 99999999999864 3 3345566
Q ss_pred cceEeccCCcCCCC
Q 037919 384 GERLDVRGNDKLCT 397 (397)
Q Consensus 384 ~~~l~l~~N~~~C~ 397 (397)
++|++++|++.|+
T Consensus 348 -~~L~l~~N~~~~~ 360 (597)
T 3oja_B 348 -KNLTLSHNDWDCN 360 (597)
T ss_dssp -SEEECCSSCEEHH
T ss_pred -CEEEeeCCCCCCh
Confidence 8999999999874
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.6e-34 Score=268.37 Aligned_cols=286 Identities=18% Similarity=0.226 Sum_probs=189.9
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCC-----CCC---CCCCCCCCCCCccceEcCCCCCCCCcccEEEEEcCCCCCCCCcccc
Q 037919 29 EMEMDEDELLGLFEVMSSLIEDP-----GWG---RAHPEPCTETPWPGVECEIGEDDPSIFHVTKVHIGPDIITPTCKIS 100 (397)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~-----~w~---~~~~~~c~~~~w~gv~C~~~~~~~~~~~v~~l~l~~~~~~~~~~~~ 100 (397)
......+|+.||++||.++..++ .|. ....++|. |.|+.|+.. .
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~---~~g~~~~~~-------------------------~ 72 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET---RTGRALKAT-------------------------A 72 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCC---SHHHHHHHH-------------------------H
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccc---cCCcchhhh-------------------------H
Confidence 34455678999999999874332 463 22346776 999999532 0
Q ss_pred ccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCc
Q 037919 101 ANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIP 180 (397)
Q Consensus 101 ~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 180 (397)
..+ .-...+++++|++++|.+. .+|.. +..+++|++|++++| .+. .+|..++++++|++|++++|.+. .+|
T Consensus 73 ~~l--~~~~~~~l~~L~L~~n~l~---~lp~~-l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp 143 (328)
T 4fcg_A 73 DLL--EDATQPGRVALELRSVPLP---QFPDQ-AFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLR-ALP 143 (328)
T ss_dssp HHH--HHHTSTTCCEEEEESSCCS---SCCSC-GGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCC-CCC
T ss_pred HHH--hcccccceeEEEccCCCch---hcChh-hhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCccc-cCc
Confidence 000 0012456777777777765 45554 345777777777777 566 66777777777777777777776 667
Q ss_pred hhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCC
Q 037919 181 KELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSR 260 (397)
Q Consensus 181 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 260 (397)
..+.++++|++|++++|++.+.+|..+.. . ..+..+..+++|++|++++|.++ .+|..+..+++
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~ 207 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN 207 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTT
T ss_pred HHHhcCcCCCEEECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCC
Confidence 67777777777777777666666654432 0 01122344666777777776666 56666666777
Q ss_pred CcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCC
Q 037919 261 LVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDN 340 (397)
Q Consensus 261 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 340 (397)
|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|++|++++
T Consensus 208 L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 208 LKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp CCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred CCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 7777777777763 455566777777777777777777777777777777777777777777777777777777777777
Q ss_pred CcCCcCCCccccCCCcCCCCEEEccCCcCc
Q 037919 341 NNLSGTVPPSLGSLPNSMLDQLNLSHNQLS 370 (397)
Q Consensus 341 n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~ 370 (397)
|.+.+.+|..++.+++ ++.+++..+.+.
T Consensus 287 n~~~~~iP~~l~~L~~--L~~l~l~~~~~~ 314 (328)
T 4fcg_A 287 CVNLSRLPSLIAQLPA--NCIILVPPHLQA 314 (328)
T ss_dssp CTTCCCCCGGGGGSCT--TCEEECCGGGSC
T ss_pred CCchhhccHHHhhccC--ceEEeCCHHHHH
Confidence 7777777777777777 777777766554
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=9.7e-33 Score=258.04 Aligned_cols=269 Identities=20% Similarity=0.266 Sum_probs=228.6
Q ss_pred CCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCC
Q 037919 111 PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190 (397)
Q Consensus 111 ~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 190 (397)
+.|++|++++|.+. .+++..|+++++|++|++++| .+.+..|..+.++++|++|++++|.++ .+|..+. ++|+
T Consensus 52 ~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKIT---EIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQ 124 (330)
T ss_dssp TTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCC---EeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--cccc
Confidence 68999999999988 567777899999999999999 888888999999999999999999998 5666554 7999
Q ss_pred EEeeecCCCCCccChhccCCCCCCEEEccCCCCCC--CCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEccc
Q 037919 191 QLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQG--QVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQ 268 (397)
Q Consensus 191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (397)
+|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDG 201 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTT
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCC
Confidence 99999999997777789999999999999999863 567789999999999999999984 555443 7999999999
Q ss_pred CCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCC
Q 037919 269 NCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348 (397)
Q Consensus 269 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 348 (397)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccCh
Confidence 9999888889999999999999999999887778899999999999999998 888889999999999999999997666
Q ss_pred ccccC------CCcCCCCEEEccCCcCcc-cc-CCChHHHhhccceEeccCCc
Q 037919 349 PSLGS------LPNSMLDQLNLSHNQLSG-EL-QFPEEFIERLGERLDVRGND 393 (397)
Q Consensus 349 ~~~~~------l~~~~L~~L~l~~N~l~g-~~-p~~~~~~~~l~~~l~l~~N~ 393 (397)
..+.. .+. ++.+++++|++.. .+ |..+.....+ +.+++++|+
T Consensus 281 ~~f~~~~~~~~~~~--l~~l~l~~N~~~~~~i~~~~f~~~~~l-~~l~L~~N~ 330 (330)
T 1xku_A 281 NDFCPPGYNTKKAS--YSGVSLFSNPVQYWEIQPSTFRCVYVR-AAVQLGNYK 330 (330)
T ss_dssp TSSSCSSCCTTSCC--CSEEECCSSSSCGGGSCGGGGTTCCCG-GGEEC----
T ss_pred hhcCCccccccccc--ccceEeecCcccccccCccccccccce-eEEEecccC
Confidence 66543 355 8999999999863 23 3333334455 789999985
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.6e-33 Score=284.98 Aligned_cols=314 Identities=22% Similarity=0.193 Sum_probs=223.5
Q ss_pred ccceEcCCCC----CCCCcccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCC
Q 037919 66 WPGVECEIGE----DDPSIFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLE 141 (397)
Q Consensus 66 w~gv~C~~~~----~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~ 141 (397)
+..|.|.... ...-..+++.|++++ +.+.+..+..|.++++|++|++++|.+. .+++..|+++++|+
T Consensus 6 ~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~ 76 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLPTNITVLNLTH------NQLRRLPAANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLK 76 (680)
T ss_dssp SSEEECCSSCCSSCCSCSCTTCSEEECCS------SCCCCCCGGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCC
T ss_pred CCeeECCCCCccccccccCCCCcEEECCC------CCCCCcCHHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcC
Confidence 5556775321 011235789999987 5677777778999999999999999887 46667788999999
Q ss_pred EEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCC
Q 037919 142 HLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWN 221 (397)
Q Consensus 142 ~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 221 (397)
+|++++| .+.+..+..|+++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..+.++++|++|++++|
T Consensus 77 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 77 VLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred EEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 9999999 777666667899999999999999998766678889999999999999998888888888999999999999
Q ss_pred CCCCCCCcccc--CCccCceeeccCCcCCCCCccccCCC---------------------------CCCcEEEcccCCCC
Q 037919 222 GLQGQVPPSLG--TLQLLQKIDLGSNKLVGSIPPAIGKL---------------------------SRLVLLDLSQNCIN 272 (397)
Q Consensus 222 ~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l---------------------------~~L~~L~l~~n~l~ 272 (397)
.+++..+..+. .+++|++|++++|.+++..+..+..+ ++|+.|++++|.++
T Consensus 156 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~ 235 (680)
T 1ziw_A 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235 (680)
T ss_dssp CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence 88876665543 45788888888888877666554433 45666666666666
Q ss_pred CCCcccCCCCCC--CCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCc-----
Q 037919 273 GPIPETLSGLQQ--LQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSG----- 345 (397)
Q Consensus 273 ~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~----- 345 (397)
+..|..+..++. |++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|...+
T Consensus 236 ~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 315 (680)
T 1ziw_A 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315 (680)
T ss_dssp EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-----
T ss_pred ccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc
Confidence 666666665543 7777777777776666667777777777777777776666666666666666666554332
Q ss_pred CCCc----cccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCC
Q 037919 346 TVPP----SLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGN 392 (397)
Q Consensus 346 ~~p~----~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N 392 (397)
.+|. .+..+++ |++|++++|++++..|..+..++.+ ++|++++|
T Consensus 316 ~lp~i~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n 363 (680)
T 1ziw_A 316 SLPKIDDFSFQWLKC--LEHLNMEDNDIPGIKSNMFTGLINL-KYLSLSNS 363 (680)
T ss_dssp -CCEECTTTTTTCTT--CCEEECCSCCBCCCCTTTTTTCTTC-CEEECTTC
T ss_pred cccccChhhcccCCC--CCEEECCCCccCCCChhHhccccCC-cEEECCCC
Confidence 2222 3445555 6666666666655555444444444 55555554
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=6.5e-33 Score=259.49 Aligned_cols=268 Identities=22% Similarity=0.258 Sum_probs=230.2
Q ss_pred CCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCC
Q 037919 111 PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190 (397)
Q Consensus 111 ~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 190 (397)
++|++|++++|.+. .+++..|.++++|++|++++| .+.+..|..+.++++|++|++++|.++ .+|..+. ++|+
T Consensus 54 ~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~ 126 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLV 126 (332)
T ss_dssp TTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCC---ccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCC
Confidence 68999999999987 677777899999999999999 889888999999999999999999998 6666654 8999
Q ss_pred EEeeecCCCCCccChhccCCCCCCEEEccCCCCC--CCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEccc
Q 037919 191 QLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQ--GQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQ 268 (397)
Q Consensus 191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (397)
+|++++|.+.+..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~ 202 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDH 202 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCS
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCC
Confidence 9999999999776777999999999999999986 3567777777 99999999999985 555543 7999999999
Q ss_pred CCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCC
Q 037919 269 NCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348 (397)
Q Consensus 269 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 348 (397)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence 9999888888999999999999999999988888999999999999999998 788889999999999999999997666
Q ss_pred ccccCC------CcCCCCEEEccCCcCc--cccCCChHHHhhccceEeccCCc
Q 037919 349 PSLGSL------PNSMLDQLNLSHNQLS--GELQFPEEFIERLGERLDVRGND 393 (397)
Q Consensus 349 ~~~~~l------~~~~L~~L~l~~N~l~--g~~p~~~~~~~~l~~~l~l~~N~ 393 (397)
..+... +. ++.+++++|++. +..|..+..++.+ +.+++++|.
T Consensus 282 ~~~~~~~~~~~~~~--l~~L~l~~N~~~~~~~~~~~~~~l~~L-~~l~l~~n~ 331 (332)
T 2ft3_A 282 NDFCPVGFGVKRAY--YNGISLFNNPVPYWEVQPATFRCVTDR-LAIQFGNYK 331 (332)
T ss_dssp TSSSCSSCCSSSCC--BSEEECCSSSSCGGGSCGGGGTTBCCS-TTEEC----
T ss_pred hHcccccccccccc--ccceEeecCcccccccCcccccccchh-hhhhccccc
Confidence 666543 55 899999999987 4445555555666 789999986
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=276.15 Aligned_cols=292 Identities=24% Similarity=0.296 Sum_probs=206.7
Q ss_pred ccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhc
Q 037919 81 FHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLA 160 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~ 160 (397)
.+++.|++++ +.+.+..+..|.++++|++|++++|.+. .+++..|+++++|++|++++| .+. .+|..
T Consensus 21 ~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N-~l~-~lp~~-- 87 (520)
T 2z7x_B 21 QKTTILNISQ------NYISELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLSHN-KLV-KISCH-- 87 (520)
T ss_dssp TTCSEEECCS------SCCCCCCHHHHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEECCSS-CCC-EEECC--
T ss_pred ccccEEECCC------CcccccChhhccccccccEEecCCCccC---CcChHHhhcccCCCEEecCCC-cee-ecCcc--
Confidence 5889999987 6777777789999999999999999987 566777899999999999999 777 46665
Q ss_pred CCCCCCEEEcccccCCC-CCchhhcCCCCCCEEeeecCCCCCccChhccCCCCC--CEEEccCCCC--CCCCCccccCCc
Q 037919 161 EIADLRVLSLSQNNLQG-NIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISL--TVLDLSWNGL--QGQVPPSLGTLQ 235 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~ 235 (397)
.+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccc
Confidence 89999999999999987 578899999999999999999985 356777788 9999999998 555555544422
Q ss_pred --------------------------------------------------------------------------------
Q 037919 236 -------------------------------------------------------------------------------- 235 (397)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (397)
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence
Q ss_pred ---cCceeeccCCcCCCCCcccc-----------------------------------------------------CCCC
Q 037919 236 ---LLQKIDLGSNKLVGSIPPAI-----------------------------------------------------GKLS 259 (397)
Q Consensus 236 ---~L~~L~l~~n~l~~~~~~~l-----------------------------------------------------~~l~ 259 (397)
+|++|++++|.++|.+|..+ ..++
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~ 324 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence 67777777777777666655 3445
Q ss_pred CCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCC--CCccccCCCCCCCEEEcccccCCcCChh-hccCCCCCCEE
Q 037919 260 RLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINS--RIPLFLGTLQNLTSISVSECGLTGPIPN-FFSSLNTLTAL 336 (397)
Q Consensus 260 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L 336 (397)
+|++|++++|.+++.+|..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++.+|. .+..+++|++|
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 55555555555555555555555666666666665554 3334455556666666666666553443 24555566666
Q ss_pred eCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcC
Q 037919 337 SLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDK 394 (397)
Q Consensus 337 ~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~ 394 (397)
++++|++++.+|..+. ++ |+.|++++|+++ .+|.....++.+ ++|++++|+.
T Consensus 405 ~Ls~N~l~~~~~~~l~--~~--L~~L~Ls~N~l~-~ip~~~~~l~~L-~~L~L~~N~l 456 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLP--PR--IKVLDLHSNKIK-SIPKQVVKLEAL-QELNVASNQL 456 (520)
T ss_dssp ECCSSCCCGGGGGSCC--TT--CCEEECCSSCCC-CCCGGGGGCTTC-CEEECCSSCC
T ss_pred ECcCCCCCcchhhhhc--cc--CCEEECCCCccc-ccchhhhcCCCC-CEEECCCCcC
Confidence 6666666555554432 34 666666666666 566555545555 6677777654
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.7e-33 Score=289.01 Aligned_cols=293 Identities=21% Similarity=0.338 Sum_probs=180.4
Q ss_pred ccEEEEEcCCCCCCCCccccc-----------------ccccccc--CCCCCCEEEcCCCCCCCCCccChhhhCCCCCCC
Q 037919 81 FHVTKVHIGPDIITPTCKISA-----------------NISDALL--KLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLE 141 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~-----------------~~~~~l~--~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~ 141 (397)
.+++.|++++ +.++| .+|+.+. ++++|++|++++|.+.+ .+| ..|+++++|+
T Consensus 448 ~~L~~L~Ls~------N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~--~iP-~~l~~L~~L~ 518 (876)
T 4ecn_A 448 TKLQIIYFAN------SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT--QLP-DFLYDLPELQ 518 (876)
T ss_dssp TTCCEEEEES------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC--SCC-GGGGGCSSCC
T ss_pred CCCCEEECcC------CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc--cCh-HHHhCCCCCC
Confidence 4677888876 56666 4888877 89999999999888775 455 4578888999
Q ss_pred EEeCcCCCCCcc-cCchhhcCCC-------CCCEEEcccccCCCCCch--hhcCCCCCCEEeeecCCCCCccChhccCCC
Q 037919 142 HLALYSNPTLSG-EIPSSLAEIA-------DLRVLSLSQNNLQGNIPK--ELGRLVNLEQLDLSYNNLSGEIPDEIGGMI 211 (397)
Q Consensus 142 ~L~l~~n~~l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 211 (397)
+|++++|..+++ .+|..+++++ +|++|++++|.++ .+|. .+.++++|++|++++|.+. .+| .+..++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 999998832777 7777666554 8888888888887 7777 7888888888888888877 666 677777
Q ss_pred CCCEEEccCCCCCCCCCccccCCcc-CceeeccCCcCCCCCccccCCCCC--CcEEEcccCCCCCC--------------
Q 037919 212 SLTVLDLSWNGLQGQVPPSLGTLQL-LQKIDLGSNKLVGSIPPAIGKLSR--LVLLDLSQNCINGP-------------- 274 (397)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~-------------- 274 (397)
+|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|++++|.+.+.
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 7777777777777 66666777776 777777766665 44444333221 33333333333221
Q ss_pred --------------Cccc-CCCCCCCCeeeccCCcCCC------------------------------CCccccC--CCC
Q 037919 275 --------------IPET-LSGLQQLQYLIVYHNPINS------------------------------RIPLFLG--TLQ 307 (397)
Q Consensus 275 --------------~~~~-l~~l~~L~~L~L~~n~l~~------------------------------~~~~~~~--~~~ 307 (397)
+|.. +..+++|+.|++++|.++. .+|..+. .++
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence 2211 1234445555555554442 2333333 445
Q ss_pred CCCEEEcccccCCcCChhhccCCCCCCEEeCCC------CcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHh
Q 037919 308 NLTSISVSECGLTGPIPNFFSSLNTLTALSLDN------NNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIE 381 (397)
Q Consensus 308 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~------n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~ 381 (397)
+|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++ |+.|++++|++ +.+|..+. +
T Consensus 754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~--L~~L~Ls~N~L-~~Ip~~l~--~ 827 (876)
T 4ecn_A 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS--LIQLQIGSNDI-RKVDEKLT--P 827 (876)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS--CCEEECCSSCC-CBCCSCCC--S
T ss_pred CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC--CCEEECCCCCC-CccCHhhc--C
Confidence 55555555555553 444445555555555543 4444555555555555 55555555555 45554432 3
Q ss_pred hccceEeccCCcC
Q 037919 382 RLGERLDVRGNDK 394 (397)
Q Consensus 382 ~l~~~l~l~~N~~ 394 (397)
.+ +.|++++|++
T Consensus 828 ~L-~~LdLs~N~l 839 (876)
T 4ecn_A 828 QL-YILDIADNPN 839 (876)
T ss_dssp SS-CEEECCSCTT
T ss_pred CC-CEEECCCCCC
Confidence 33 5556665554
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.5e-32 Score=273.41 Aligned_cols=145 Identities=28% Similarity=0.265 Sum_probs=115.7
Q ss_pred EEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCC
Q 037919 84 TKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIA 163 (397)
Q Consensus 84 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~ 163 (397)
+.+++++ +.+++ +|..+. ++|++|++++|.+. .+++..|.++++|++|++++| .+++..|..|.+++
T Consensus 34 ~~l~ls~------~~L~~-ip~~~~--~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 34 SMVDYSN------RNLTH-VPKDLP--PRTKALSLSQNSIS---ELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQ 100 (562)
T ss_dssp CEEECTT------SCCCS-CCTTSC--TTCCEEECCSSCCC---CCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCT
T ss_pred cEEEcCC------CCCcc-CCCCCC--CCcCEEECCCCCcc---ccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCC
Confidence 4566665 45554 555554 89999999999988 577778999999999999999 89988899999999
Q ss_pred CCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCC-ccChhccCCCCCCEEEccCCCCCCCCCccccCCccC--cee
Q 037919 164 DLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSG-EIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLL--QKI 240 (397)
Q Consensus 164 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L 240 (397)
+|++|++++|.++ .+|.. .+++|++|++++|++.+ ..|..+.++++|++|++++|.+.+.. +..+++| ++|
T Consensus 101 ~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L 174 (562)
T 3a79_B 101 DLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCI 174 (562)
T ss_dssp TCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEE
T ss_pred CCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEE
Confidence 9999999999998 56665 89999999999999986 35688999999999999999887532 2233333 555
Q ss_pred eccCCcC
Q 037919 241 DLGSNKL 247 (397)
Q Consensus 241 ~l~~n~l 247 (397)
++++|.+
T Consensus 175 ~L~~n~l 181 (562)
T 3a79_B 175 LLDLVSY 181 (562)
T ss_dssp EEEESSC
T ss_pred Eeecccc
Confidence 5555444
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.5e-32 Score=272.79 Aligned_cols=152 Identities=19% Similarity=0.275 Sum_probs=130.8
Q ss_pred cceEcCCCC----CCCCcccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCE
Q 037919 67 PGVECEIGE----DDPSIFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEH 142 (397)
Q Consensus 67 ~gv~C~~~~----~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~ 142 (397)
..|.|.... ......+++.|++++ +.+.+..+..|.++++|++|++++|.+. .+++..|+++++|++
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIPSSTKNIDLSF------NPLKILKSYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSN 84 (606)
T ss_dssp TEEECTTSCCSSCCTTSCTTCCEEECTT------SCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCE
T ss_pred CceEccCCCcccCCCCCCCCcCEEECCC------CCcCEeChhhccCCccCcEEeCCCCccc---ccCHHHhhchhhcCE
Confidence 357775421 111235899999997 6788888889999999999999999987 677778999999999
Q ss_pred EeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCC-ccChhccCCCCCCEEEccCC
Q 037919 143 LALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSG-EIPDEIGGMISLTVLDLSWN 221 (397)
Q Consensus 143 L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n 221 (397)
|++++| .+.+..|..|+++++|++|++++|.+.+..+..+.++++|++|++++|.+.+ .+|..+.++++|++|++++|
T Consensus 85 L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 85 LILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp EECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred eECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 999999 8998889999999999999999999987777889999999999999999986 57999999999999999999
Q ss_pred CCCCCCC
Q 037919 222 GLQGQVP 228 (397)
Q Consensus 222 ~l~~~~~ 228 (397)
.+++..+
T Consensus 164 ~l~~~~~ 170 (606)
T 3vq2_A 164 YIQTITV 170 (606)
T ss_dssp CCCEECT
T ss_pred cceecCh
Confidence 8765433
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.5e-32 Score=281.65 Aligned_cols=280 Identities=23% Similarity=0.278 Sum_probs=232.8
Q ss_pred cccEEEEEcCCCCCCCCccccccc-cccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchh
Q 037919 80 IFHVTKVHIGPDIITPTCKISANI-SDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSS 158 (397)
Q Consensus 80 ~~~v~~l~l~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~ 158 (397)
-.+++.|++++ +...+.+ +..|.++++|++|+|++|.+. .+.+..|+++++|++|++++| .+.+.+|..
T Consensus 47 l~~L~~LdLs~------n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 116 (844)
T 3j0a_A 47 LEQLQLLELGS------QYTPLTIDKEAFRNLPNLRILDLGSSKIY---FLHPDAFQGLFHLFELRLYFC-GLSDAVLKD 116 (844)
T ss_dssp CCSCSEEEECT------TCCCCEECTTTTSSCTTCCEEECTTCCCC---EECTTSSCSCSSCCCEECTTC-CCSSCCSTT
T ss_pred cccCeEEeCCC------CCCccccCHHHhcCCCCCCEEECCCCcCc---ccCHhHccCCcccCEeeCcCC-CCCcccccC
Confidence 35788899987 4455666 678999999999999999987 566777899999999999999 888876665
Q ss_pred --hcCCCCCCEEEcccccCCCCCc-hhhcCCCCCCEEeeecCCCCCccChhccCC--CCCCEEEccCCCCCCCCCccccC
Q 037919 159 --LAEIADLRVLSLSQNNLQGNIP-KELGRLVNLEQLDLSYNNLSGEIPDEIGGM--ISLTVLDLSWNGLQGQVPPSLGT 233 (397)
Q Consensus 159 --l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~ 233 (397)
+.++++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..++.
T Consensus 117 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 196 (844)
T 3j0a_A 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196 (844)
T ss_dssp CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS
T ss_pred ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh
Confidence 8999999999999999987654 578999999999999999998888888776 88999999999888877777766
Q ss_pred Ccc------CceeeccCCcCCCCCccccCC--------------------------------------CCCCcEEEcccC
Q 037919 234 LQL------LQKIDLGSNKLVGSIPPAIGK--------------------------------------LSRLVLLDLSQN 269 (397)
Q Consensus 234 l~~------L~~L~l~~n~l~~~~~~~l~~--------------------------------------l~~L~~L~l~~n 269 (397)
+++ |++|++++|.+++..+..+.. .++|+.|++++|
T Consensus 197 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n 276 (844)
T 3j0a_A 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276 (844)
T ss_dssp SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC
T ss_pred cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC
Confidence 665 888888888776554433221 257888889888
Q ss_pred CCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCc
Q 037919 270 CINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPP 349 (397)
Q Consensus 270 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 349 (397)
.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+.
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS
T ss_pred cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh
Confidence 88877778888888999999999988887788888888999999999988877788888888999999999988877777
Q ss_pred cccCCCcCCCCEEEccCCcCcc
Q 037919 350 SLGSLPNSMLDQLNLSHNQLSG 371 (397)
Q Consensus 350 ~~~~l~~~~L~~L~l~~N~l~g 371 (397)
.+..+++ |+.|++++|.+++
T Consensus 357 ~~~~l~~--L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 357 TFKFLEK--LQTLDLRDNALTT 376 (844)
T ss_dssp CSCSCCC--CCEEEEETCCSCC
T ss_pred hhcCCCC--CCEEECCCCCCCc
Confidence 7888888 8888888888874
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.2e-32 Score=258.41 Aligned_cols=290 Identities=23% Similarity=0.241 Sum_probs=234.8
Q ss_pred ccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhc
Q 037919 81 FHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLA 160 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~ 160 (397)
.+++.+++++ +.+.+..+..+..+++|++|++++|.+. .+++..|+++++|++|++++| .+....+..+.
T Consensus 69 ~~L~~L~L~~------n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 138 (390)
T 3o6n_A 69 RQVELLNLND------LQIEEIDTYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFH 138 (390)
T ss_dssp CCCSEEECTT------SCCCEECTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccCcEEECCC------CcccccChhhccCCCCcCEEECCCCCCC---cCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhc
Confidence 4677888876 6677777779999999999999999988 577778899999999999999 78765555679
Q ss_pred CCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCC---------------
Q 037919 161 EIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQG--------------- 225 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--------------- 225 (397)
++++|++|++++|.+.+..+..+..+++|++|++++|.+++.. +..+++|+.|++++|.+++
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n 215 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 215 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS
T ss_pred CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCC
Confidence 9999999999999999877888999999999999999998542 3445555555555554432
Q ss_pred ---CCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccc
Q 037919 226 ---QVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLF 302 (397)
Q Consensus 226 ---~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 302 (397)
.++. ...++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++..
T Consensus 216 ~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~ 290 (390)
T 3o6n_A 216 SINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY 290 (390)
T ss_dssp CCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECS
T ss_pred eeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcc
Confidence 1111 2346899999999999864 578899999999999999998888999999999999999999987 4556
Q ss_pred cCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhh
Q 037919 303 LGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIER 382 (397)
Q Consensus 303 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~ 382 (397)
+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++. + +..+++ |+.|++++|++++.-.. .....
T Consensus 291 ~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~--L~~L~l~~N~~~~~~~~--~~~~~ 362 (390)
T 3o6n_A 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHT--LKNLTLSHNDWDCNSLR--ALFRN 362 (390)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCC--CSEEECCSSCEEHHHHH--HHTTT
T ss_pred cCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhcc--CCEEEcCCCCccchhHH--HHHHH
Confidence 678899999999999998 6777788899999999999999854 3 667888 99999999999875322 22233
Q ss_pred ccceEeccCCcCCCC
Q 037919 383 LGERLDVRGNDKLCT 397 (397)
Q Consensus 383 l~~~l~l~~N~~~C~ 397 (397)
+ ....+.+++..|.
T Consensus 363 ~-~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 363 V-ARPAVDDADQHCK 376 (390)
T ss_dssp C-CTTTBCCCCSCCC
T ss_pred H-HhhcccccCceec
Confidence 3 3445667777774
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.9e-31 Score=248.82 Aligned_cols=280 Identities=24% Similarity=0.343 Sum_probs=225.1
Q ss_pred ccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhc
Q 037919 81 FHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLA 160 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~ 160 (397)
.+++.+++++ +.+.+. ++ +.++++|++|++++|.+.. ++ .+..+++|++|++++| .+.+..+ +.
T Consensus 66 ~~L~~L~l~~------n~i~~~-~~-~~~l~~L~~L~L~~n~i~~---~~--~~~~l~~L~~L~l~~n-~i~~~~~--~~ 129 (347)
T 4fmz_A 66 TNLEYLNLNG------NQITDI-SP-LSNLVKLTNLYIGTNKITD---IS--ALQNLTNLRELYLNED-NISDISP--LA 129 (347)
T ss_dssp TTCCEEECCS------SCCCCC-GG-GTTCTTCCEEECCSSCCCC---CG--GGTTCTTCSEEECTTS-CCCCCGG--GT
T ss_pred CCccEEEccC------Cccccc-hh-hhcCCcCCEEEccCCcccC---ch--HHcCCCcCCEEECcCC-cccCchh--hc
Confidence 4677888876 444433 33 8888888888888887763 33 3788888999999888 6665433 78
Q ss_pred CCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCcee
Q 037919 161 EIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKI 240 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 240 (397)
.+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|+.|
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L 204 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYF 204 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEE
T ss_pred cCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCcccee
Confidence 88889999998886654444 47888899999999988874433 78889999999999988743 33 7888999999
Q ss_pred eccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCC
Q 037919 241 DLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLT 320 (397)
Q Consensus 241 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 320 (397)
++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|+++
T Consensus 205 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC
Confidence 999998875433 7788999999999999986433 88899999999999998874 46788999999999999998
Q ss_pred cCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcC
Q 037919 321 GPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDK 394 (397)
Q Consensus 321 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~ 394 (397)
+. ..+..+++|++|++++|.+++..|..+..+++ |++|++++|++++..| +..++.+ ++|++++|+.
T Consensus 279 ~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~--~~~l~~L-~~L~l~~N~i 345 (347)
T 4fmz_A 279 DI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN--LTTLFLSQNHITDIRP--LASLSKM-DSADFANQVI 345 (347)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT--CSEEECCSSSCCCCGG--GGGCTTC-SEESSSCC--
T ss_pred CC--hhhcCCCCCCEEECcCCcCCCcChhHhhcccc--CCEEEccCCccccccC--hhhhhcc-ceeehhhhcc
Confidence 54 45788999999999999999888888999999 9999999999998777 5566777 8999999975
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=258.55 Aligned_cols=257 Identities=17% Similarity=0.173 Sum_probs=220.9
Q ss_pred CCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCC
Q 037919 111 PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190 (397)
Q Consensus 111 ~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 190 (397)
++|++|++++|.+. .+++..|.++++|++|++++| .+.+..+..+.++++|++|++++|.+++..+..+.++++|+
T Consensus 52 ~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcCc---ccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 58999999999987 677777899999999999999 88888888999999999999999999865555589999999
Q ss_pred EEeeecCCCCCccC-hhccCCCCCCEEEccCCC-CCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEccc
Q 037919 191 QLDLSYNNLSGEIP-DEIGGMISLTVLDLSWNG-LQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQ 268 (397)
Q Consensus 191 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (397)
+|++++|++.+..+ ..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 99999999985433 378899999999999994 6655677899999999999999999988889999999999999999
Q ss_pred CCCCCCCcccCCCCCCCCeeeccCCcCCCCCcccc---CCCCCCCEEEcccccCCc----CChhhccCCCCCCEEeCCCC
Q 037919 269 NCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL---GTLQNLTSISVSECGLTG----PIPNFFSSLNTLTALSLDNN 341 (397)
Q Consensus 269 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~Ls~n 341 (397)
|.+.......+..+++|++|++++|.+++..+..+ ...+.++.++++++.+++ .+|..+..+++|++|++++|
T Consensus 208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 99874433345568999999999999987655433 346788999999999886 47888899999999999999
Q ss_pred cCCcCCCcc-ccCCCcCCCCEEEccCCcCccccC
Q 037919 342 NLSGTVPPS-LGSLPNSMLDQLNLSHNQLSGELQ 374 (397)
Q Consensus 342 ~l~~~~p~~-~~~l~~~~L~~L~l~~N~l~g~~p 374 (397)
+++ .+|.. +..+++ |++|++++|++++..|
T Consensus 288 ~l~-~i~~~~~~~l~~--L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 288 QLK-SVPDGIFDRLTS--LQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCC-CCCTTTTTTCTT--CCEEECCSSCBCCCHH
T ss_pred CCC-ccCHHHHhcCCC--CCEEEeeCCCccCcCC
Confidence 999 56665 588999 9999999999999876
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=5.7e-31 Score=246.04 Aligned_cols=268 Identities=21% Similarity=0.238 Sum_probs=232.3
Q ss_pred CCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCE
Q 037919 112 YLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQ 191 (397)
Q Consensus 112 ~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 191 (397)
+++.++++++.+. .+|... .+.|++|++++| .+++..+..+.++++|++|++++|.+++..|..+.++++|++
T Consensus 32 ~l~~l~~~~~~l~---~lp~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLE---KVPKDL---PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCC---SCCCSC---CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCeEEEecCCCcc---ccCccC---CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 6889999988876 455432 378999999999 888887888999999999999999999888999999999999
Q ss_pred EeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCC--CCccccCCCCCCcEEEcccC
Q 037919 192 LDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVG--SIPPAIGKLSRLVLLDLSQN 269 (397)
Q Consensus 192 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n 269 (397)
|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|
T Consensus 105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred EECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 999999998 5666544 799999999999997777789999999999999999863 66778899999999999999
Q ss_pred CCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCc
Q 037919 270 CINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPP 349 (397)
Q Consensus 270 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 349 (397)
.++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|.
T Consensus 182 ~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 182 NITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp CCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred cccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence 9984 555543 89999999999999988889999999999999999999888888999999999999999999 8888
Q ss_pred cccCCCcCCCCEEEccCCcCccccCCChHH------HhhccceEeccCCcCCC
Q 037919 350 SLGSLPNSMLDQLNLSHNQLSGELQFPEEF------IERLGERLDVRGNDKLC 396 (397)
Q Consensus 350 ~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~------~~~l~~~l~l~~N~~~C 396 (397)
.+..+++ |++|++++|++++..+..+.. ...+ +.+++++|++.+
T Consensus 258 ~l~~l~~--L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l-~~l~l~~N~~~~ 307 (330)
T 1xku_A 258 GLADHKY--IQVVYLHNNNISAIGSNDFCPPGYNTKKASY-SGVSLFSNPVQY 307 (330)
T ss_dssp TTTTCSS--CCEEECCSSCCCCCCTTSSSCSSCCTTSCCC-SEEECCSSSSCG
T ss_pred hhccCCC--cCEEECCCCcCCccChhhcCCcccccccccc-cceEeecCcccc
Confidence 9999999 999999999998655443321 1233 689999999753
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=3.7e-31 Score=247.52 Aligned_cols=267 Identities=24% Similarity=0.248 Sum_probs=232.0
Q ss_pred CCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCE
Q 037919 112 YLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQ 191 (397)
Q Consensus 112 ~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 191 (397)
+++.++++++.+. .+|... .++|++|++++| .+.+..|..+.++++|++|++++|.+++..|..+.++++|++
T Consensus 34 ~l~~l~~~~~~l~---~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLK---AVPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCS---SCCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCcc---ccCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 6899999999877 566543 378999999999 888888889999999999999999999888999999999999
Q ss_pred EeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCC--CCCccccCCCCCCcEEEcccC
Q 037919 192 LDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLV--GSIPPAIGKLSRLVLLDLSQN 269 (397)
Q Consensus 192 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n 269 (397)
|++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|
T Consensus 107 L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 107 LYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp EECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred EECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 999999998 5666554 89999999999999776677999999999999999986 3667777777 9999999999
Q ss_pred CCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCc
Q 037919 270 CINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPP 349 (397)
Q Consensus 270 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 349 (397)
.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|.
T Consensus 183 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 183 KLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp BCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred CCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence 9985 565554 79999999999999988889999999999999999999888888999999999999999999 7888
Q ss_pred cccCCCcCCCCEEEccCCcCccccCCChHHH------hhccceEeccCCcCCC
Q 037919 350 SLGSLPNSMLDQLNLSHNQLSGELQFPEEFI------ERLGERLDVRGNDKLC 396 (397)
Q Consensus 350 ~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~------~~l~~~l~l~~N~~~C 396 (397)
.+..+++ |+.|++++|++++..+..+... ..+ +.|++++|++.+
T Consensus 259 ~l~~l~~--L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l-~~L~l~~N~~~~ 308 (332)
T 2ft3_A 259 GLPDLKL--LQVVYLHTNNITKVGVNDFCPVGFGVKRAYY-NGISLFNNPVPY 308 (332)
T ss_dssp TGGGCTT--CCEEECCSSCCCBCCTTSSSCSSCCSSSCCB-SEEECCSSSSCG
T ss_pred hhhcCcc--CCEEECCCCCCCccChhHccccccccccccc-cceEeecCcccc
Confidence 8999999 9999999999986655433211 233 689999999863
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.98 E-value=3.2e-32 Score=251.78 Aligned_cols=260 Identities=22% Similarity=0.223 Sum_probs=182.7
Q ss_pred CCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcc--cCchhhcCCCCCCEEEcccccCCCCCchhhcCCCC
Q 037919 111 PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSG--EIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVN 188 (397)
Q Consensus 111 ~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 188 (397)
++|++|++++|.+. .++...|+++++|++|++++| .+.. ..+..+..+++|++|++++|.+. .+|..+..+++
T Consensus 28 ~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 102 (306)
T ss_dssp TTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTT
T ss_pred CCCCEEECCCCccC---ccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCC
Confidence 68899999999887 677777889999999999988 6653 34677778888888888888877 46666778888
Q ss_pred CCEEeeecCCCCCccC-hhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCC-CCccccCCCCCCcEEEc
Q 037919 189 LEQLDLSYNNLSGEIP-DEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVG-SIPPAIGKLSRLVLLDL 266 (397)
Q Consensus 189 L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l 266 (397)
|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++
T Consensus 103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 8888888888775443 467778888888888887776666677777777777777777765 45666677777777777
Q ss_pred ccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCC-CCCEEeCCCCcCCc
Q 037919 267 SQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLN-TLTALSLDNNNLSG 345 (397)
Q Consensus 267 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~Ls~n~l~~ 345 (397)
++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|.+++
T Consensus 183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 77777766566677777777777777777666555666667777777777777766666666663 67777777776665
Q ss_pred CCC--ccccCCCcCCCCEEEccCCcCccccCCCh
Q 037919 346 TVP--PSLGSLPNSMLDQLNLSHNQLSGELQFPE 377 (397)
Q Consensus 346 ~~p--~~~~~l~~~~L~~L~l~~N~l~g~~p~~~ 377 (397)
..+ .....+.. .+.+.+..+.+.+..|...
T Consensus 263 ~c~~~~~~~~l~~--~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 263 TCEHQSFLQWIKD--QRQLLVEVERMECATPSDK 294 (306)
T ss_dssp SGGGHHHHHHHHH--TGGGBSCGGGCBEEESGGG
T ss_pred ccChHHHHHHHHh--hhhhhccccccccCCchhh
Confidence 321 11111222 3334455556666666443
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=3.9e-31 Score=266.49 Aligned_cols=270 Identities=22% Similarity=0.233 Sum_probs=231.4
Q ss_pred CCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCC
Q 037919 109 KLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVN 188 (397)
Q Consensus 109 ~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 188 (397)
.+++++.++++++.+. .+|+.+|..+++|++|++++| .+.+..|..|..+++|++|+|++|.+.+..|..|.++++
T Consensus 49 ~l~~l~~l~l~~~~l~---~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCEES---EECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCceEEEeeCCCCC---CcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 4689999999999887 788888999999999999999 899888889999999999999999999888888999999
Q ss_pred CCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEccc
Q 037919 189 LEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQ 268 (397)
Q Consensus 189 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (397)
|++|++++|.+++..+..+.++++|++|++++|.+++..|..++.+++|++|++++|.+++.. +..+++|+.|++++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY 201 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCS
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhccc
Confidence 999999999999665566799999999999999999888888999999999999999998653 33445555555555
Q ss_pred CCCCC------------------CCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCC
Q 037919 269 NCING------------------PIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSL 330 (397)
Q Consensus 269 n~l~~------------------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 330 (397)
|.+++ .++.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..++.+
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred CccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 54432 11211 135789999999988873 668889999999999999999999999999
Q ss_pred CCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcC
Q 037919 331 NTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDK 394 (397)
Q Consensus 331 ~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~ 394 (397)
++|+.|+|++|.+++ +|..+..+|+ |+.|++++|+++ .+|..+..++.+ ++|++++|+.
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~--L~~L~Ls~N~l~-~i~~~~~~l~~L-~~L~L~~N~l 336 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPT--LKVLDLSHNHLL-HVERNQPQFDRL-ENLYLDHNSI 336 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTT--CCEEECCSSCCC-CCGGGHHHHTTC-SEEECCSSCC
T ss_pred cCCCEEECCCCCCCC-CCcccccCCC--CcEEECCCCCCC-ccCcccccCCCC-CEEECCCCCC
Confidence 999999999999996 5777778899 999999999998 577777777888 8999999975
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=2.5e-30 Score=243.23 Aligned_cols=281 Identities=24% Similarity=0.340 Sum_probs=237.7
Q ss_pred ccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhc
Q 037919 81 FHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLA 160 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~ 160 (397)
.+++.+++.+ +.+.. + +.+..+++|++|++++|.+. .+++ +..+++|++|++++| .+... +.+.
T Consensus 44 ~~L~~L~l~~------~~i~~-~-~~~~~~~~L~~L~l~~n~i~---~~~~--~~~l~~L~~L~L~~n-~i~~~--~~~~ 107 (347)
T 4fmz_A 44 ESITKLVVAG------EKVAS-I-QGIEYLTNLEYLNLNGNQIT---DISP--LSNLVKLTNLYIGTN-KITDI--SALQ 107 (347)
T ss_dssp TTCSEEECCS------SCCCC-C-TTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSS-CCCCC--GGGT
T ss_pred ccccEEEEeC------Ccccc-c-hhhhhcCCccEEEccCCccc---cchh--hhcCCcCCEEEccCC-cccCc--hHHc
Confidence 4688888886 33332 2 34888999999999999887 4444 799999999999999 77653 4699
Q ss_pred CCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCcee
Q 037919 161 EIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKI 240 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 240 (397)
++++|++|++++|.+.+ ++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 108 ~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L 182 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182 (347)
T ss_dssp TCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred CCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence 99999999999999984 444 8899999999999997664544 48999999999999999885433 8899999999
Q ss_pred eccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCC
Q 037919 241 DLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLT 320 (397)
Q Consensus 241 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 320 (397)
++++|.+.+. +. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 183 ~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 183 SLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp ECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 9999999854 33 7889999999999999986544 7889999999999999987655 889999999999999998
Q ss_pred cCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcCC
Q 037919 321 GPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDKL 395 (397)
Q Consensus 321 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~~ 395 (397)
+. ..+..+++|++|++++|.+++. +.+..+++ |+.|++++|++++..|..+..++.+ ++|++++|+..
T Consensus 257 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~ 324 (347)
T 4fmz_A 257 DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQ--LNSLFLNNNQLGNEDMEVIGGLTNL-TTLFLSQNHIT 324 (347)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTT--CSEEECCSSCCCGGGHHHHHTCTTC-SEEECCSSSCC
T ss_pred CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCC--CCEEECcCCcCCCcChhHhhccccC-CEEEccCCccc
Confidence 53 4688999999999999999864 46888999 9999999999998888766666777 89999999864
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2e-31 Score=246.43 Aligned_cols=271 Identities=21% Similarity=0.264 Sum_probs=227.5
Q ss_pred EEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCC--CCchhhcCCCCCCEE
Q 037919 115 TLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQG--NIPKELGRLVNLEQL 192 (397)
Q Consensus 115 ~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L 192 (397)
.++.+++.++ .+|... .++|++|++++| .+....+..+.++++|++|++++|.+.. ..+..+..+++|++|
T Consensus 11 ~l~c~~~~l~---~ip~~~---~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 11 EIRCNSKGLT---SVPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp EEECCSSCCS---SCCSCC---CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred EEEcCCCCcc---cCCCCC---CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 3444444444 455432 368999999999 7876555568999999999999999873 336777889999999
Q ss_pred eeecCCCCCccChhccCCCCCCEEEccCCCCCCCCC-ccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCC
Q 037919 193 DLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVP-PSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCI 271 (397)
Q Consensus 193 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 271 (397)
++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 84 ~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 84 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp ECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 99999998 577779999999999999999986554 5789999999999999999988888899999999999999999
Q ss_pred CC-CCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCcc
Q 037919 272 NG-PIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPS 350 (397)
Q Consensus 272 ~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 350 (397)
++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 87 57888999999999999999999988889999999999999999999877778899999999999999999999999
Q ss_pred ccCCC-cCCCCEEEccCCcCccccCCC--hHHHhhccceEeccCCcCCC
Q 037919 351 LGSLP-NSMLDQLNLSHNQLSGELQFP--EEFIERLGERLDVRGNDKLC 396 (397)
Q Consensus 351 ~~~l~-~~~L~~L~l~~N~l~g~~p~~--~~~~~~l~~~l~l~~N~~~C 396 (397)
+..++ + |++|++++|++++..+.. ..+.... +.+.+..+...|
T Consensus 243 ~~~~~~~--L~~L~L~~N~~~~~c~~~~~~~~l~~~-~~~~~~~~~~~C 288 (306)
T 2z66_A 243 LQHFPSS--LAFLNLTQNDFACTCEHQSFLQWIKDQ-RQLLVEVERMEC 288 (306)
T ss_dssp CCCCCTT--CCEEECTTCCEECSGGGHHHHHHHHHT-GGGBSCGGGCBE
T ss_pred HHhhhcc--CCEEEccCCCeecccChHHHHHHHHhh-hhhhcccccccc
Confidence 99885 7 999999999999865432 2334443 445555666665
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.5e-31 Score=252.43 Aligned_cols=278 Identities=19% Similarity=0.208 Sum_probs=232.9
Q ss_pred CCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCC
Q 037919 109 KLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVN 188 (397)
Q Consensus 109 ~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 188 (397)
.|+.....+.+++.++ .+|... .++|++|++++| .+.+..+..+.++++|++|++++|.+++..+..+.++++
T Consensus 29 ~C~~~~~c~~~~~~l~---~iP~~~---~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN---SIPSGL---TEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp EECTTSEEECCSTTCS---SCCTTC---CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCeEeeCCCCCcc---cccccc---cccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 3444455667777766 566543 358999999999 888877778999999999999999999877888999999
Q ss_pred CCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCC-ccccCCccCceeeccCCc-CCCCCccccCCCCCCcEEEc
Q 037919 189 LEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVP-PSLGTLQLLQKIDLGSNK-LVGSIPPAIGKLSRLVLLDL 266 (397)
Q Consensus 189 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l 266 (397)
|++|++++|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++|. +.+..+..+..+++|++|++
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 9999999999996555568999999999999999985433 478999999999999994 66556678999999999999
Q ss_pred ccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhc---cCCCCCCEEeCCCCcC
Q 037919 267 SQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFF---SSLNTLTALSLDNNNL 343 (397)
Q Consensus 267 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~Ls~n~l 343 (397)
++|.+++..|..+..+++|++|++++|.++......+..+++|++|++++|++++..+..+ ...+.++.++++++.+
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 9999998889999999999999999999876544455668999999999999997654433 3467889999999999
Q ss_pred Cc----CCCccccCCCcCCCCEEEccCCcCccccCCCh-HHHhhccceEeccCCcCCCC
Q 037919 344 SG----TVPPSLGSLPNSMLDQLNLSHNQLSGELQFPE-EFIERLGERLDVRGNDKLCT 397 (397)
Q Consensus 344 ~~----~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~-~~~~~l~~~l~l~~N~~~C~ 397 (397)
++ .+|..+..+++ |+.|++++|+++ .+|... ..++.+ ++|++++|++.|+
T Consensus 262 ~~~~l~~l~~~l~~l~~--L~~L~Ls~N~l~-~i~~~~~~~l~~L-~~L~L~~N~~~~~ 316 (353)
T 2z80_A 262 TDESLFQVMKLLNQISG--LLELEFSRNQLK-SVPDGIFDRLTSL-QKIWLHTNPWDCS 316 (353)
T ss_dssp CHHHHHHHHHHHHTCTT--CCEEECCSSCCC-CCCTTTTTTCTTC-CEEECCSSCBCCC
T ss_pred cCcchhhhHHHHhcccC--CCEEECCCCCCC-ccCHHHHhcCCCC-CEEEeeCCCccCc
Confidence 86 47778899999 999999999998 677654 556677 8999999999996
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=262.01 Aligned_cols=167 Identities=26% Similarity=0.362 Sum_probs=140.9
Q ss_pred cCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCc-cccCCCCCCcEEEcccCCCCCCCcccCCCCCCCC
Q 037919 208 GGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIP-PAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQ 286 (397)
Q Consensus 208 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 286 (397)
..+++|++|++++|.+.+ ++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 370 ~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp HTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred cccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 334444444444444442 22336677888888888888876655 4688999999999999999988899999999999
Q ss_pred eeeccCCcCC-CCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEcc
Q 037919 287 YLIVYHNPIN-SRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLS 365 (397)
Q Consensus 287 ~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~ 365 (397)
+|++++|.++ +..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++ |+.|+++
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~ 526 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS--LQKIWLH 526 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT--CCEEECC
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC--CcEEEec
Confidence 9999999997 567889999999999999999999888999999999999999999999888888999999 9999999
Q ss_pred CCcCccccCCCh
Q 037919 366 HNQLSGELQFPE 377 (397)
Q Consensus 366 ~N~l~g~~p~~~ 377 (397)
+|+++|..|...
T Consensus 527 ~N~~~~~~~~~~ 538 (570)
T 2z63_A 527 TNPWDCSCPRID 538 (570)
T ss_dssp SSCBCCCTTTTH
T ss_pred CCcccCCCcchH
Confidence 999999998754
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=4.8e-30 Score=251.04 Aligned_cols=281 Identities=27% Similarity=0.405 Sum_probs=172.4
Q ss_pred ccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhc
Q 037919 81 FHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLA 160 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~ 160 (397)
.+++.|++++ +.+.+..+ +.++++|++|++++|.+.+ +++ +.++++|++|++++| .+.+..+ +.
T Consensus 68 ~~L~~L~Ls~------n~l~~~~~--~~~l~~L~~L~l~~n~l~~---~~~--~~~l~~L~~L~L~~n-~l~~~~~--~~ 131 (466)
T 1o6v_A 68 NNLTQINFSN------NQLTDITP--LKNLTKLVDILMNNNQIAD---ITP--LANLTNLTGLTLFNN-QITDIDP--LK 131 (466)
T ss_dssp TTCCEEECCS------SCCCCCGG--GTTCTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSS-CCCCCGG--GT
T ss_pred cCCCEEECCC------CccCCchh--hhccccCCEEECCCCcccc---Chh--hcCCCCCCEEECCCC-CCCCChH--Hc
Confidence 4677888876 44444333 7777788888887777663 333 677777777777777 5555422 66
Q ss_pred CCCCCCEEEcccccCCCCCc--------------------hhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccC
Q 037919 161 EIADLRVLSLSQNNLQGNIP--------------------KELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSW 220 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~--------------------~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 220 (397)
++++|++|++++|.+.+. + ..+.++++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 132 ~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 132 NLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATN 208 (466)
T ss_dssp TCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CCCCCCEEECCCCccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecC
Confidence 677777777776665531 1 1244556666666666666532 2355556666666666
Q ss_pred CCCCCCCC--------------------ccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCC
Q 037919 221 NGLQGQVP--------------------PSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLS 280 (397)
Q Consensus 221 n~l~~~~~--------------------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 280 (397)
|.+.+..+ ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +.
T Consensus 209 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~ 284 (466)
T 1o6v_A 209 NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284 (466)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred CcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--cc
Confidence 65554322 233444455555555555543322 4555556666666665554322 55
Q ss_pred CCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCC
Q 037919 281 GLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLD 360 (397)
Q Consensus 281 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~ 360 (397)
.+++|++|++++|.+++..+ +..+++|++|++++|++++..| +..+++|+.|++++|++++. ..+..+++ |+
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~--L~ 356 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN--IN 356 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT--CC
T ss_pred CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC--CC
Confidence 56666666666666655433 5566777777777777765544 56677777777777777754 45677777 88
Q ss_pred EEEccCCcCccccCCChHHHhhccceEeccCCcCC
Q 037919 361 QLNLSHNQLSGELQFPEEFIERLGERLDVRGNDKL 395 (397)
Q Consensus 361 ~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~~ 395 (397)
.|++++|++++..| +..++.+ +.|++++|++.
T Consensus 357 ~L~l~~n~l~~~~~--~~~l~~L-~~L~l~~n~~~ 388 (466)
T 1o6v_A 357 WLSAGHNQISDLTP--LANLTRI-TQLGLNDQAWT 388 (466)
T ss_dssp EEECCSSCCCBCGG--GTTCTTC-CEEECCCEEEE
T ss_pred EEeCCCCccCccch--hhcCCCC-CEEeccCCccc
Confidence 88888888887776 4445666 77888887654
No 45
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.8e-31 Score=266.39 Aligned_cols=152 Identities=17% Similarity=0.196 Sum_probs=131.9
Q ss_pred cccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCch
Q 037919 102 NISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPK 181 (397)
Q Consensus 102 ~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 181 (397)
.+|+.+. ++|++|++++|.+. .+++..|.++++|++|++++| .+.+..|..|.++++|++|++++|.+++..+.
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKIT---YIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCC---EECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred cccccCC--CCccEEECcCCccC---ccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHH
Confidence 4555543 79999999999987 566667899999999999999 89988889999999999999999999988777
Q ss_pred hhcCCCCCCEEeeecCCCCC-ccChhccCCCCCCEEEccCCCCCCCCC-ccccCCccCceeeccCCcCCCCCccccCCCC
Q 037919 182 ELGRLVNLEQLDLSYNNLSG-EIPDEIGGMISLTVLDLSWNGLQGQVP-PSLGTLQLLQKIDLGSNKLVGSIPPAIGKLS 259 (397)
Q Consensus 182 ~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 259 (397)
.+.++++|++|++++|.+.+ ..|..+.++++|++|++++|.+.+.++ ..+..+++|++|++++|.+++..|..+..++
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 89999999999999999986 356789999999999999998554554 6899999999999999999887777665543
No 46
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=2.9e-29 Score=245.55 Aligned_cols=277 Identities=27% Similarity=0.378 Sum_probs=190.3
Q ss_pred ccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhc
Q 037919 81 FHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLA 160 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~ 160 (397)
.+++.+++.+ +.+.. ++ .+..+++|++|++++|.+.+ +++ +..+++|++|++++| .+.+..+ +.
T Consensus 46 ~~l~~L~l~~------~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~---~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~ 109 (466)
T 1o6v_A 46 DQVTTLQADR------LGIKS-ID-GVEYLNNLTQINFSNNQLTD---ITP--LKNLTKLVDILMNNN-QIADITP--LA 109 (466)
T ss_dssp HTCCEEECCS------SCCCC-CT-TGGGCTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSS-CCCCCGG--GT
T ss_pred ccccEEecCC------CCCcc-Cc-chhhhcCCCEEECCCCccCC---chh--hhccccCCEEECCCC-ccccChh--hc
Confidence 4788888876 33332 33 47889999999999999874 454 799999999999999 7776655 99
Q ss_pred CCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccCh--------------------hccCCCCCCEEEccC
Q 037919 161 EIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPD--------------------EIGGMISLTVLDLSW 220 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--------------------~l~~l~~L~~L~l~~ 220 (397)
++++|++|++++|.+++. +. +.++++|++|++++|.+.+. +. .+.++++|++|++++
T Consensus 110 ~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186 (466)
T ss_dssp TCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEECcC
Confidence 999999999999999854 43 88999999999999988742 21 245667788888888
Q ss_pred CCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCc
Q 037919 221 NGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIP 300 (397)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 300 (397)
|.+.+. ..+..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+
T Consensus 187 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 187 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh
Confidence 877643 346777888888888887775443 55667777777777766642 245566667777777666665443
Q ss_pred cccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHH
Q 037919 301 LFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFI 380 (397)
Q Consensus 301 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~ 380 (397)
+..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++ |+.|++++|++++..| +..+
T Consensus 261 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~--L~~L~L~~n~l~~~~~--~~~l 330 (466)
T 1o6v_A 261 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN--LTYLTLYFNNISDISP--VSSL 330 (466)
T ss_dssp --GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT--CSEEECCSSCCSCCGG--GGGC
T ss_pred --hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC--CCEEECcCCcCCCchh--hccC
Confidence 5556666666666666664332 5556666666666666654322 455555 6666666666655544 2233
Q ss_pred hhccceEeccCCc
Q 037919 381 ERLGERLDVRGND 393 (397)
Q Consensus 381 ~~l~~~l~l~~N~ 393 (397)
+.+ ++|++++|+
T Consensus 331 ~~L-~~L~l~~n~ 342 (466)
T 1o6v_A 331 TKL-QRLFFYNNK 342 (466)
T ss_dssp TTC-CEEECCSSC
T ss_pred ccC-CEeECCCCc
Confidence 444 455555554
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=7.2e-30 Score=248.82 Aligned_cols=252 Identities=23% Similarity=0.212 Sum_probs=212.2
Q ss_pred CCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCE
Q 037919 112 YLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQ 191 (397)
Q Consensus 112 ~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 191 (397)
..+.++.++..+. .+|... .++|++|++++| .+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++
T Consensus 55 ~~~~v~c~~~~l~---~iP~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 55 QFSKVVCTRRGLS---EVPQGI---PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127 (452)
T ss_dssp SSCEEECCSSCCS---SCCSCC---CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCcEEEECCCCcC---ccCCCC---CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence 3567777777766 566432 368999999999 888888899999999999999999998877788999999999
Q ss_pred EeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCc-cccCCCCCCcEEEcccCC
Q 037919 192 LDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIP-PAIGKLSRLVLLDLSQNC 270 (397)
Q Consensus 192 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~ 270 (397)
|+|++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|+..+.++ ..+..+++|++|++++|.
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 9999999997666778899999999999999986666788899999999999854444444 468889999999999999
Q ss_pred CCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCcc
Q 037919 271 INGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPS 350 (397)
Q Consensus 271 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 350 (397)
+++. | .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..
T Consensus 208 l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 208 IKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred cccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 8853 4 5778889999999999998888888899999999999999998888888888999999999999998777777
Q ss_pred ccCCCcCCCCEEEccCCcCccccC
Q 037919 351 LGSLPNSMLDQLNLSHNQLSGELQ 374 (397)
Q Consensus 351 ~~~l~~~~L~~L~l~~N~l~g~~p 374 (397)
+..+++ |+.|++++|++...-.
T Consensus 286 ~~~l~~--L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 286 FTPLRY--LVELHLHHNPWNCDCD 307 (452)
T ss_dssp STTCTT--CCEEECCSSCEECSTT
T ss_pred hccccC--CCEEEccCCCcCCCCC
Confidence 888888 9999999998876544
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=5e-30 Score=239.33 Aligned_cols=234 Identities=23% Similarity=0.364 Sum_probs=168.0
Q ss_pred ccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhc
Q 037919 81 FHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLA 160 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~ 160 (397)
.+|+.|++++ +.+. .+|+.+.++++|++|++++|.+. .+|. .++.+++|++|++++| .+. .+|..+.
T Consensus 81 ~~l~~L~L~~------n~l~-~lp~~l~~l~~L~~L~L~~n~l~---~lp~-~~~~l~~L~~L~Ls~n-~l~-~lp~~l~ 147 (328)
T 4fcg_A 81 PGRVALELRS------VPLP-QFPDQAFRLSHLQHMTIDAAGLM---ELPD-TMQQFAGLETLTLARN-PLR-ALPASIA 147 (328)
T ss_dssp TTCCEEEEES------SCCS-SCCSCGGGGTTCSEEEEESSCCC---CCCS-CGGGGTTCSEEEEESC-CCC-CCCGGGG
T ss_pred cceeEEEccC------CCch-hcChhhhhCCCCCEEECCCCCcc---chhH-HHhccCCCCEEECCCC-ccc-cCcHHHh
Confidence 4899999987 4555 78888999999999999999987 4554 4689999999999999 777 7899999
Q ss_pred CCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCcee
Q 037919 161 EIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKI 240 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 240 (397)
++++|++|++++|.+.+.+|..+.. . ..+..+.++++|++|++++|+++ .+|..++.+++|++|
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE
T ss_pred cCcCCCEEECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE
Confidence 9999999999999988888876643 0 11122444555555555555555 445555555555555
Q ss_pred eccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCC
Q 037919 241 DLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLT 320 (397)
Q Consensus 241 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 320 (397)
++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.
T Consensus 212 ~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 212 KIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp EEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred EccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 555555553 3444556666666666666666666666666667777777776666666666677777777777777777
Q ss_pred cCChhhccCCCCCCEEeCCCCcCC
Q 037919 321 GPIPNFFSSLNTLTALSLDNNNLS 344 (397)
Q Consensus 321 ~~~~~~~~~~~~L~~L~Ls~n~l~ 344 (397)
+.+|..++++++|+.+++..+.+.
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhccHHHhhccCceEEeCCHHHHH
Confidence 777777777777777777766554
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=9.8e-30 Score=247.02 Aligned_cols=252 Identities=22% Similarity=0.237 Sum_probs=215.0
Q ss_pred CCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCE
Q 037919 112 YLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQ 191 (397)
Q Consensus 112 ~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 191 (397)
..+.++.++..+. .+|..+ .+++++|++++| .+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++
T Consensus 44 ~~~~v~c~~~~l~---~iP~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 44 QFSKVICVRKNLR---EVPDGI---STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp TSCEEECCSCCCS---SCCSCC---CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred CCCEEEeCCCCcC---cCCCCC---CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence 3567777777766 566543 368999999999 888888889999999999999999998777788999999999
Q ss_pred EeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCc-cccCCCCCCcEEEcccCC
Q 037919 192 LDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIP-PAIGKLSRLVLLDLSQNC 270 (397)
Q Consensus 192 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~ 270 (397)
|++++|++++..+..+..+++|++|++++|.+....+..+..+++|++|++++|+..+.++ ..|..+++|++|++++|.
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 9999999997666678999999999999999987667788999999999999855444444 468889999999999999
Q ss_pred CCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCcc
Q 037919 271 INGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPS 350 (397)
Q Consensus 271 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 350 (397)
++ .+| .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..
T Consensus 197 l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 197 LR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp CS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred Cc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 88 445 4788899999999999998888888999999999999999999888888999999999999999999777777
Q ss_pred ccCCCcCCCCEEEccCCcCccccC
Q 037919 351 LGSLPNSMLDQLNLSHNQLSGELQ 374 (397)
Q Consensus 351 ~~~l~~~~L~~L~l~~N~l~g~~p 374 (397)
+..+++ |+.|++++|++...-.
T Consensus 275 ~~~l~~--L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 275 FTPLHH--LERIHLHHNPWNCNCD 296 (440)
T ss_dssp TSSCTT--CCEEECCSSCEECSST
T ss_pred hccccC--CCEEEcCCCCccCCCC
Confidence 888888 9999999999876543
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=5.1e-29 Score=242.62 Aligned_cols=273 Identities=21% Similarity=0.253 Sum_probs=146.0
Q ss_pred cEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcC
Q 037919 82 HVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAE 161 (397)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~ 161 (397)
+++.+++++ +.+.+. | .+..+++|++|++++|.+.+ ++ ++.+++|++|++++| .+++. + +++
T Consensus 43 ~L~~L~Ls~------n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~---~~---~~~l~~L~~L~Ls~N-~l~~~-~--~~~ 104 (457)
T 3bz5_A 43 TLTSLDCHN------SSITDM-T-GIEKLTGLTKLICTSNNITT---LD---LSQNTNLTYLACDSN-KLTNL-D--VTP 104 (457)
T ss_dssp TCCEEECCS------SCCCCC-T-TGGGCTTCSEEECCSSCCSC---CC---CTTCTTCSEEECCSS-CCSCC-C--CTT
T ss_pred CCCEEEccC------CCcccC-h-hhcccCCCCEEEccCCcCCe---Ec---cccCCCCCEEECcCC-CCcee-e--cCC
Confidence 455555554 333332 2 45555566666666555542 22 455555555555555 44442 2 555
Q ss_pred CCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCC---------------------ccChhccCCCCCCEEEccC
Q 037919 162 IADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSG---------------------EIPDEIGGMISLTVLDLSW 220 (397)
Q Consensus 162 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---------------------~~~~~l~~l~~L~~L~l~~ 220 (397)
+++|++|++++|.+++ ++ +..+++|++|++++|++++ .+ .+..+++|++|++++
T Consensus 105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 5555555555555553 22 4555555555555555553 22 133444455555555
Q ss_pred CCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCc
Q 037919 221 NGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIP 300 (397)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 300 (397)
|++++ +| +..+++|++|++++|.+++. .++.+++|++|++++|++++ +| +..+++|++|++++|.+++..+
T Consensus 180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 180 NKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp SCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred Cccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 54443 22 44445555555555555432 24455555555555555554 33 4455555555555555555433
Q ss_pred cccCCCC-------CCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCc--------cccCCCcCCCCEEEcc
Q 037919 301 LFLGTLQ-------NLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPP--------SLGSLPNSMLDQLNLS 365 (397)
Q Consensus 301 ~~~~~~~-------~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~--------~~~~l~~~~L~~L~l~ 365 (397)
..+.+++ +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. .+..+++ |+.|+++
T Consensus 251 ~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~--L~~L~L~ 326 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK--LVYLYLN 326 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT--CCEEECT
T ss_pred HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhccc--CCEEECC
Confidence 2222222 33344444444444443 34567777777777776655543 2445567 8888888
Q ss_pred CCcCccccCCChHHHhhccceEeccCCcC
Q 037919 366 HNQLSGELQFPEEFIERLGERLDVRGNDK 394 (397)
Q Consensus 366 ~N~l~g~~p~~~~~~~~l~~~l~l~~N~~ 394 (397)
+|+++| ++ +..++.+ +.|++++|+.
T Consensus 327 ~N~l~~-l~--l~~l~~L-~~L~l~~N~l 351 (457)
T 3bz5_A 327 NTELTE-LD--VSHNTKL-KSLSCVNAHI 351 (457)
T ss_dssp TCCCSC-CC--CTTCTTC-SEEECCSSCC
T ss_pred CCcccc-cc--cccCCcC-cEEECCCCCC
Confidence 888887 33 4556667 7888888875
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.97 E-value=2.4e-31 Score=246.60 Aligned_cols=249 Identities=22% Similarity=0.225 Sum_probs=184.4
Q ss_pred ccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCC-cccCchhhc-------CCCCCCEEEcccccCCCC
Q 037919 107 LLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTL-SGEIPSSLA-------EIADLRVLSLSQNNLQGN 178 (397)
Q Consensus 107 l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~ 178 (397)
+...++|++|++++|.+ .+|...... |++|++++| .+ .+.+|..+. ++++|++|++++|.+++.
T Consensus 39 ~~~~~~L~~l~l~~n~l----~~p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE----ADLGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110 (312)
T ss_dssp EEEEEECTTHHHHCCTT----CCCHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred EccCCCceeEeeccccc----ccHHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence 45567788888888877 345443322 788888888 55 456666665 788888888888888877
Q ss_pred Cchhh--cCCCCCCEEeeecCCCCCccChhccCC-----CCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCC-
Q 037919 179 IPKEL--GRLVNLEQLDLSYNNLSGEIPDEIGGM-----ISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGS- 250 (397)
Q Consensus 179 ~~~~l--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~- 250 (397)
+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..++.+++|++|++++|.+.+.
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence 77765 7788888888888888866 7666665 7888888888888877777888888888888888887654
Q ss_pred -Ccccc--CCCCCCcEEEcccCCCCC--CCc-ccCCCCCCCCeeeccCCcCCCCCc-cccCCCCCCCEEEcccccCCcCC
Q 037919 251 -IPPAI--GKLSRLVLLDLSQNCING--PIP-ETLSGLQQLQYLIVYHNPINSRIP-LFLGTLQNLTSISVSECGLTGPI 323 (397)
Q Consensus 251 -~~~~l--~~l~~L~~L~l~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~ 323 (397)
.+..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~i 268 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV 268 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SC
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hh
Confidence 22333 677888888888888873 222 334567788888888888877654 34556788888888888887 66
Q ss_pred hhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCcc
Q 037919 324 PNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG 371 (397)
Q Consensus 324 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g 371 (397)
|..+. ++|++|++++|++++. |. +..+++ |++|++++|++++
T Consensus 269 p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~--L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 269 PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ--VGNLSLKGNPFLD 310 (312)
T ss_dssp CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE--EEEEECTTCTTTC
T ss_pred hhhcc--CCceEEECCCCCCCCC-hh-HhhCCC--CCEEeccCCCCCC
Confidence 76665 7788888888888755 55 777888 8888888888775
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=6.4e-29 Score=242.13 Aligned_cols=237 Identities=21% Similarity=0.225 Sum_probs=211.0
Q ss_pred cccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCch
Q 037919 102 NISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPK 181 (397)
Q Consensus 102 ~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 181 (397)
.+|..+. +++++|++++|.+. .+++..|.++++|++|++++| .+.+..+..|.++++|++|+|++|.+++..+.
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQ---MIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCC---EECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred ccCCCCC--CCccEEECcCCcCc---eECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChh
Confidence 3454443 68999999999988 577777999999999999999 89988889999999999999999999976667
Q ss_pred hhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCC-CccccCCccCceeeccCCcCCCCCccccCCCCC
Q 037919 182 ELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQV-PPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSR 260 (397)
Q Consensus 182 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 260 (397)
.+..+++|++|++++|.+....+..+.++++|++|++++|...+.+ +..+..+++|++|++++|.+++. | .+..+++
T Consensus 142 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~ 219 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVG 219 (452)
T ss_dssp TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTT
T ss_pred hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccccc
Confidence 7899999999999999999766678999999999999995544344 45688999999999999999854 4 5788999
Q ss_pred CcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCC
Q 037919 261 LVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDN 340 (397)
Q Consensus 261 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 340 (397)
|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 99999999999988899999999999999999999998889999999999999999999987778889999999999999
Q ss_pred CcCCcC
Q 037919 341 NNLSGT 346 (397)
Q Consensus 341 n~l~~~ 346 (397)
|.+...
T Consensus 300 Np~~Cd 305 (452)
T 3zyi_A 300 NPWNCD 305 (452)
T ss_dssp SCEECS
T ss_pred CCcCCC
Confidence 998753
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=3.5e-29 Score=229.03 Aligned_cols=254 Identities=23% Similarity=0.198 Sum_probs=209.0
Q ss_pred CEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEe
Q 037919 114 KTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLD 193 (397)
Q Consensus 114 ~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 193 (397)
++++.+++.+. .+|.. -.++|++|++++| .+.+..+..+.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 14 ~~~~c~~~~l~---~ip~~---~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQ---AVPVG---IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCS---SCCTT---CCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred eEEEcCcCCcc---cCCcC---CCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence 67888887776 45543 3578999999999 88887778899999999999999999877788899999999999
Q ss_pred eecCC-CCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCC
Q 037919 194 LSYNN-LSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCIN 272 (397)
Q Consensus 194 L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 272 (397)
+++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence 99997 77666788889999999999999998777888889999999999999988766667888999999999999988
Q ss_pred CCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCcccc
Q 037919 273 GPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLG 352 (397)
Q Consensus 273 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 352 (397)
+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+.. .
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~ 245 (285)
T 1ozn_A 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-P 245 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-H
T ss_pred ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-H
Confidence 666667888899999999999998888888888899999999999998777777888999999999999888654321 1
Q ss_pred CCCcCCCCEEEccCCcCccccCCCh
Q 037919 353 SLPNSMLDQLNLSHNQLSGELQFPE 377 (397)
Q Consensus 353 ~l~~~~L~~L~l~~N~l~g~~p~~~ 377 (397)
.... ++.+..+.+.+.+..|...
T Consensus 246 ~~~~--l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 246 LWAW--LQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHHH--HHHCCSEECCCBEEESGGG
T ss_pred HHHH--HHhcccccCccccCCchHh
Confidence 1122 5556677788888888654
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.8e-29 Score=230.97 Aligned_cols=239 Identities=22% Similarity=0.200 Sum_probs=204.5
Q ss_pred CCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEccccc-CCCCCchhhcCCCC
Q 037919 110 LPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNN-LQGNIPKELGRLVN 188 (397)
Q Consensus 110 l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~ 188 (397)
.++|++|++++|.+. .+++..|..+++|++|++++| .+.+..|..+.++++|++|++++|. +....+..+..+++
T Consensus 31 ~~~l~~L~l~~n~i~---~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CTTCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCcCC---ccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 468999999999887 677777899999999999999 8888888899999999999999997 77666788999999
Q ss_pred CCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEccc
Q 037919 189 LEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQ 268 (397)
Q Consensus 189 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (397)
|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence 99999999999987788899999999999999999877667789999999999999999876666788999999999999
Q ss_pred CCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCC
Q 037919 269 NCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348 (397)
Q Consensus 269 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 348 (397)
|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+.. .-...++.+..+.+.+.+..|
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEES
T ss_pred CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCc
Confidence 9999888889999999999999999999877778899999999999999987654421 111334555677888888888
Q ss_pred ccccC
Q 037919 349 PSLGS 353 (397)
Q Consensus 349 ~~~~~ 353 (397)
+.+..
T Consensus 266 ~~l~g 270 (285)
T 1ozn_A 266 QRLAG 270 (285)
T ss_dssp GGGTT
T ss_pred hHhCC
Confidence 77654
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=8.3e-29 Score=240.51 Aligned_cols=236 Identities=24% Similarity=0.257 Sum_probs=211.1
Q ss_pred cccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCch
Q 037919 102 NISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPK 181 (397)
Q Consensus 102 ~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 181 (397)
.+|..+. ++++.|++++|.+. .+++..|.++++|++|++++| .+.+..+..|.++++|++|+|++|.+++..+.
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQ---IIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCC---EECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred cCCCCCC--CCCcEEEccCCcCC---eeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 4555443 78999999999988 677778999999999999999 88888889999999999999999999966666
Q ss_pred hhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCC-CccccCCccCceeeccCCcCCCCCccccCCCCC
Q 037919 182 ELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQV-PPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSR 260 (397)
Q Consensus 182 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 260 (397)
.+..+++|++|++++|.+....+..+..+++|++|++++|...+.+ +..+..+++|++|++++|.++. +| .+..+++
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~ 208 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIK 208 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSS
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcc
Confidence 7999999999999999999777778999999999999996544344 4578999999999999999984 45 5788999
Q ss_pred CcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCC
Q 037919 261 LVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDN 340 (397)
Q Consensus 261 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 340 (397)
|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 99999999999988889999999999999999999998889999999999999999999988788889999999999999
Q ss_pred CcCCc
Q 037919 341 NNLSG 345 (397)
Q Consensus 341 n~l~~ 345 (397)
|.+..
T Consensus 289 Np~~C 293 (440)
T 3zyj_A 289 NPWNC 293 (440)
T ss_dssp SCEEC
T ss_pred CCccC
Confidence 99874
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=7.7e-29 Score=241.36 Aligned_cols=259 Identities=24% Similarity=0.235 Sum_probs=206.7
Q ss_pred ccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCc
Q 037919 101 ANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIP 180 (397)
Q Consensus 101 ~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 180 (397)
+..+..+.++++|++|++++|.+.+ +| .+..+++|++|++++| .+++. | ++.+++|++|++++|.+++. +
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~---~~--~l~~l~~L~~L~Ls~n-~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITD---MT--GIEKLTGLTKLICTSN-NITTL-D--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCC---CT--TGGGCTTCSEEECCSS-CCSCC-C--CTTCTTCSEEECCSSCCSCC-C
T ss_pred cccccChhHcCCCCEEEccCCCccc---Ch--hhcccCCCCEEEccCC-cCCeE-c--cccCCCCCEEECcCCCCcee-e
Confidence 3445578889999999999999884 44 3789999999999999 78874 3 88999999999999999864 3
Q ss_pred hhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCC
Q 037919 181 KELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSR 260 (397)
Q Consensus 181 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 260 (397)
+.++++|++|++++|++++ ++ +..+++|++|++++|++++. .++.+++|++|++++|...+.+ .+..+++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred --cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 8899999999999999986 44 88999999999999999874 3788999999999999766555 4778899
Q ss_pred CcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCC
Q 037919 261 LVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDN 340 (397)
Q Consensus 261 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 340 (397)
|++|++++|++++ +| +..+++|++|++++|.+++. .+..+++|++|++++|++++ +| ++.+++|++|++++
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 9999999999886 44 77888999999999988875 37788899999999999986 55 77888999999999
Q ss_pred CcCCcCCCccccCCC-------cCCCCEEEccCCcCccccCCChHHHhhccceEeccCCc
Q 037919 341 NNLSGTVPPSLGSLP-------NSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGND 393 (397)
Q Consensus 341 n~l~~~~p~~~~~l~-------~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~ 393 (397)
|++++..+..+..+. + ++.+++++|++.|.+|.. .++.+ +.|++++|+
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~--L~~L~l~~n~~~~~~~~~--~l~~L-~~L~Ls~n~ 297 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTD--LLEIDLTHNTQLIYFQAE--GCRKI-KELDVTHNT 297 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCC--CSCCCCTTCTTCCEEECT--TCTTC-CCCCCTTCT
T ss_pred CcCCCcCHHHCCCCCEEeccCCC--CCEEECCCCccCCccccc--ccccC-CEEECCCCc
Confidence 988876554444433 3 456666666666666632 23444 555666554
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=7.3e-29 Score=251.27 Aligned_cols=142 Identities=24% Similarity=0.256 Sum_probs=125.5
Q ss_pred cccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCch
Q 037919 102 NISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPK 181 (397)
Q Consensus 102 ~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 181 (397)
.+|+.+. +.+++|+|++|.++ .+++..|.++++|++|+|++| .+.+..+.+|.++++|++|+|++|++++..+.
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~---~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred ccCCCCC--cCCCEEEeeCCCCC---CCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 3454432 47999999999998 788888999999999999999 89988888999999999999999999976677
Q ss_pred hhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCC-CCCccccCCccCceeeccCCcCCC
Q 037919 182 ELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQG-QVPPSLGTLQLLQKIDLGSNKLVG 249 (397)
Q Consensus 182 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~ 249 (397)
.|.++++|++|++++|++++..+..++++++|++|++++|.+++ ..|..++.+++|++|++++|.+++
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 89999999999999999997767779999999999999999975 467888999999999999987654
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.1e-30 Score=242.12 Aligned_cols=249 Identities=22% Similarity=0.272 Sum_probs=212.3
Q ss_pred hhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCC-CCCchhhc-------CCCCCCEEeeecCCCCCccC
Q 037919 133 LFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQ-GNIPKELG-------RLVNLEQLDLSYNNLSGEIP 204 (397)
Q Consensus 133 ~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~ 204 (397)
++...++|++|++++| .+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++.+|
T Consensus 38 ~~~~~~~L~~l~l~~n-~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVD-TE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCC-TT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccc-cc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 3567789999999999 66 678777654 999999999984 46777665 79999999999999998888
Q ss_pred hhc--cCCCCCCEEEccCCCCCCCCCccccCC-----ccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCC--C
Q 037919 205 DEI--GGMISLTVLDLSWNGLQGQVPPSLGTL-----QLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGP--I 275 (397)
Q Consensus 205 ~~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~ 275 (397)
..+ ..+++|++|++++|++++. |..++.+ ++|++|++++|.+.+..+..++.+++|++|++++|++.+. .
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 876 8999999999999999977 7777777 8999999999999988888999999999999999998865 3
Q ss_pred cccC--CCCCCCCeeeccCCcCCCC---CccccCCCCCCCEEEcccccCCcCCh-hhccCCCCCCEEeCCCCcCCcCCCc
Q 037919 276 PETL--SGLQQLQYLIVYHNPINSR---IPLFLGTLQNLTSISVSECGLTGPIP-NFFSSLNTLTALSLDNNNLSGTVPP 349 (397)
Q Consensus 276 ~~~l--~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~ 349 (397)
+..+ ..+++|++|++++|.+++. ....+..+++|++|++++|++++.+| ..+..+++|++|++++|+++ .+|.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 4444 8899999999999999842 22344678999999999999998775 45677899999999999999 7888
Q ss_pred cccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcCC
Q 037919 350 SLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDKL 395 (397)
Q Consensus 350 ~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~~ 395 (397)
.+. ++ |++|++++|++++. |. +..++.+ ++|++++|++.
T Consensus 271 ~~~--~~--L~~L~Ls~N~l~~~-p~-~~~l~~L-~~L~L~~N~l~ 309 (312)
T 1wwl_A 271 GLP--AK--LSVLDLSYNRLDRN-PS-PDELPQV-GNLSLKGNPFL 309 (312)
T ss_dssp SCC--SE--EEEEECCSSCCCSC-CC-TTTSCEE-EEEECTTCTTT
T ss_pred hcc--CC--ceEEECCCCCCCCC-hh-HhhCCCC-CEEeccCCCCC
Confidence 776 77 99999999999987 65 5566777 89999999875
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.3e-29 Score=235.46 Aligned_cols=259 Identities=20% Similarity=0.151 Sum_probs=191.9
Q ss_pred cccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCC
Q 037919 98 KISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQG 177 (397)
Q Consensus 98 ~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 177 (397)
.+...+...+..+++|++|++++|.+. .+++..|..+++|++|++++| .+.+..+ +..+++|++|++++|.+++
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCC---CCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTCTTCCEEECCSSEEEE
T ss_pred chhhhHHHHhccCCCCCEEECcCCccC---cCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhcCCCCEEECcCCcccc
Confidence 444444455567778888888888877 466667788888888888888 6766554 7888888888888888763
Q ss_pred CCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCcccc-C
Q 037919 178 NIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAI-G 256 (397)
Q Consensus 178 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~ 256 (397)
. + ..++|++|++++|.+++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ .
T Consensus 95 l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 95 L-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp E-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred c-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 2 2 347888888888888754433 36778888888888887666677788888888888888876655555 3
Q ss_pred CCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEE
Q 037919 257 KLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTAL 336 (397)
Q Consensus 257 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 336 (397)
.+++|++|++++|.+++. + ....+++|++|++++|.+++..+ .+..+++|++|++++|+++ .+|..+..+++|+.|
T Consensus 167 ~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence 678888888888888754 2 23347788888888888876444 4777788888888888887 567777788888888
Q ss_pred eCCCCcCC-cCCCccccCCCcCCCCEEEccCC-cCccccCCC
Q 037919 337 SLDNNNLS-GTVPPSLGSLPNSMLDQLNLSHN-QLSGELQFP 376 (397)
Q Consensus 337 ~Ls~n~l~-~~~p~~~~~l~~~~L~~L~l~~N-~l~g~~p~~ 376 (397)
++++|.++ +.+|..+..++. ++.+++++| .+.|..|..
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~--L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQR--VQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHH--HHHHHHHHHHHHHSSSSCC
T ss_pred EccCCCccCcCHHHHHhcccc--ceEEECCCchhccCCchhc
Confidence 88888887 667777778877 888888744 566665543
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.3e-29 Score=235.52 Aligned_cols=257 Identities=24% Similarity=0.177 Sum_probs=210.7
Q ss_pred CCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEE
Q 037919 113 LKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQL 192 (397)
Q Consensus 113 L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 192 (397)
++..+++.+.+. ..+...+..+++|++|++++| .+.+..|..+.++++|++|++++|.+++..+ +..+++|++|
T Consensus 12 l~i~~ls~~~l~---~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 12 YKIEKVTDSSLK---QALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEESCCTTTHH---HHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred eeEeeccccchh---hhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 444555555554 455666788899999999999 8898888999999999999999999986544 8899999999
Q ss_pred eeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCC
Q 037919 193 DLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCIN 272 (397)
Q Consensus 193 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 272 (397)
++++|.+++. ...++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 86 ~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 86 DLNNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp ECCSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred ECcCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 9999998742 2348999999999999865433 4678999999999999877778888999999999999999
Q ss_pred CCCcccC-CCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccc
Q 037919 273 GPIPETL-SGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSL 351 (397)
Q Consensus 273 ~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 351 (397)
+..+..+ ..+++|++|++++|.+++.. ....+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 233 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKAL 233 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred cccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHh
Confidence 8766665 47899999999999998752 23358999999999999995 4555888999999999999999 578888
Q ss_pred cCCCcCCCCEEEccCCcCc-cccCCChHHHhhccceEecc
Q 037919 352 GSLPNSMLDQLNLSHNQLS-GELQFPEEFIERLGERLDVR 390 (397)
Q Consensus 352 ~~l~~~~L~~L~l~~N~l~-g~~p~~~~~~~~l~~~l~l~ 390 (397)
..+++ |+.|++++|+++ +.+|..+...+.+ +.++++
T Consensus 234 ~~l~~--L~~L~l~~N~~~~~~~~~~~~~~~~L-~~l~l~ 270 (317)
T 3o53_A 234 RFSQN--LEHFDLRGNGFHCGTLRDFFSKNQRV-QTVAKQ 270 (317)
T ss_dssp CCCTT--CCEEECTTCCCBHHHHHHHHHTCHHH-HHHHHH
T ss_pred hcCCC--CCEEEccCCCccCcCHHHHHhccccc-eEEECC
Confidence 89999 999999999998 6666554444444 555555
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=5.4e-29 Score=244.46 Aligned_cols=234 Identities=21% Similarity=0.152 Sum_probs=112.9
Q ss_pred CCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCC
Q 037919 111 PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190 (397)
Q Consensus 111 ~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 190 (397)
++|++|++++|.+. .+++..|..+++|++|++++| .+++..| +..+++|++|++++|.+++. + ..++|+
T Consensus 34 ~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~ 102 (487)
T 3oja_A 34 WNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIE 102 (487)
T ss_dssp GGCCEEECCSSCCC---CCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCC
T ss_pred CCccEEEeeCCcCC---CCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcC
Confidence 35666666666555 344444556666666666666 4554443 55556666666666655421 1 124555
Q ss_pred EEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccC-CCCCCcEEEcccC
Q 037919 191 QLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIG-KLSRLVLLDLSQN 269 (397)
Q Consensus 191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n 269 (397)
+|++++|.+.+..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|+.|++++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 555555555543322 234555555555555544444455555555555555555544444433 3455555555555
Q ss_pred CCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCC-cCCC
Q 037919 270 CINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLS-GTVP 348 (397)
Q Consensus 270 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p 348 (397)
.+++. + ....+++|++|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|
T Consensus 180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 180 FIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ccccc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 54432 1 12234444444444444444222 23444444444444444442 3434444444444444444444 3333
Q ss_pred ccccCCCcCCCCEEEc
Q 037919 349 PSLGSLPNSMLDQLNL 364 (397)
Q Consensus 349 ~~~~~l~~~~L~~L~l 364 (397)
..+..++. ++.+++
T Consensus 256 ~~~~~l~~--L~~l~~ 269 (487)
T 3oja_A 256 DFFSKNQR--VQTVAK 269 (487)
T ss_dssp HHHTTCHH--HHHHHH
T ss_pred HHHHhCCC--CcEEec
Confidence 33444444 444443
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.3e-26 Score=225.48 Aligned_cols=229 Identities=28% Similarity=0.363 Sum_probs=103.7
Q ss_pred CCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCC
Q 037919 111 PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190 (397)
Q Consensus 111 ~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 190 (397)
++|++|++++|.+. .+| + |+++++|++|++++| .+.+ +|.. .++|++|++++|.+++ +| .+.++++|+
T Consensus 131 ~~L~~L~L~~n~l~---~lp-~-~~~l~~L~~L~l~~N-~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~ 198 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE---KLP-E-LQNSSFLKIIDVDNN-SLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLT 198 (454)
T ss_dssp TTCCEEECCSSCCS---SCC-C-CTTCTTCCEEECCSS-CCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred CCCCEEECcCCCCC---CCc-c-cCCCCCCCEEECCCC-cCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCC
Confidence 35555555555554 233 1 455555555555555 4443 2322 1355555555555543 33 344555555
Q ss_pred EEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCcccc---------------
Q 037919 191 QLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAI--------------- 255 (397)
Q Consensus 191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l--------------- 255 (397)
+|++++|.+.+ +|.. .++|++|++++|.+. .+| .++.+++|++|++++|.+++ +|..+
T Consensus 199 ~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 199 AIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTD 271 (454)
T ss_dssp EEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSC
T ss_pred EEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccc
Confidence 55555555442 2221 124444444444444 333 24444444444444444442 22110
Q ss_pred --CCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCC-CCCCEEEcccccCCcCChhhccCCCC
Q 037919 256 --GKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTL-QNLTSISVSECGLTGPIPNFFSSLNT 332 (397)
Q Consensus 256 --~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~ 332 (397)
..+++|++|++++|.+++ ++.. .++|++|++++|.+++. ... ++|++|++++|++++ +|.. +++
T Consensus 272 l~~~~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~ 338 (454)
T 1jl5_A 272 LPELPQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPR 338 (454)
T ss_dssp CCCCCTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred cCcccCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCc
Confidence 012344455555554443 1100 02333333333333321 111 356666666666653 3432 355
Q ss_pred CCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCcc--ccCCCh
Q 037919 333 LTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG--ELQFPE 377 (397)
Q Consensus 333 L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g--~~p~~~ 377 (397)
|++|++++|+++ .+|. .+++ |++|++++|+++| .+|..+
T Consensus 339 L~~L~L~~N~l~-~lp~---~l~~--L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 339 LERLIASFNHLA-EVPE---LPQN--LKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp CCEEECCSSCCS-CCCC---CCTT--CCEEECCSSCCSSCCCCCTTC
T ss_pred CCEEECCCCccc-cccc---hhhh--ccEEECCCCCCCcCCCChHHH
Confidence 666666666665 3444 2344 6666666666665 555444
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.2e-28 Score=241.89 Aligned_cols=244 Identities=26% Similarity=0.214 Sum_probs=206.6
Q ss_pred CCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCE
Q 037919 136 ALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTV 215 (397)
Q Consensus 136 ~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 215 (397)
.+++|++|++++| .+.+..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++. | ..++|++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCE
Confidence 4458999999999 8998888999999999999999999986655 88999999999999998843 2 3389999
Q ss_pred EEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCC-CCCCCCeeeccCCc
Q 037919 216 LDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLS-GLQQLQYLIVYHNP 294 (397)
Q Consensus 216 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~ 294 (397)
|++++|.+++..+. .+++|++|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|++|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999865543 468899999999999988888899999999999999999988887775 78999999999999
Q ss_pred CCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCc-ccc
Q 037919 295 INSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLS-GEL 373 (397)
Q Consensus 295 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~-g~~ 373 (397)
+++..+ ...+++|+.|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..++. |+.|++++|++. +.+
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~--L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQN--LEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTT--CCEEECTTCCBCHHHH
T ss_pred cccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCC--CCEEEcCCCCCcCcch
Confidence 987633 3458999999999999996544 58899999999999999995 7888889999 999999999998 666
Q ss_pred CCChHHHhhccceEecc-------CCcCCCC
Q 037919 374 QFPEEFIERLGERLDVR-------GNDKLCT 397 (397)
Q Consensus 374 p~~~~~~~~l~~~l~l~-------~N~~~C~ 397 (397)
|..+...+.+ +.+++. .|++.|+
T Consensus 255 ~~~~~~l~~L-~~l~~~~~~~~~~~~~~~c~ 284 (487)
T 3oja_A 255 RDFFSKNQRV-QTVAKQTVKKLTGQNEEECT 284 (487)
T ss_dssp HHHHTTCHHH-HHHHHHHHHHHTSSSSCCCS
T ss_pred HHHHHhCCCC-cEEeccccccccCCCccccc
Confidence 5544444444 556665 7777774
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=4.8e-26 Score=221.49 Aligned_cols=263 Identities=27% Similarity=0.362 Sum_probs=145.5
Q ss_pred cEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcC
Q 037919 82 HVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAE 161 (397)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~ 161 (397)
+++.+++++ +.+++ +|.. +++|++|++++|.+.+ ++. ..++|++|++++| .+.+ +| .+++
T Consensus 92 ~L~~L~l~~------n~l~~-lp~~---~~~L~~L~l~~n~l~~---l~~----~~~~L~~L~L~~n-~l~~-lp-~~~~ 151 (454)
T 1jl5_A 92 HLESLVASC------NSLTE-LPEL---PQSLKSLLVDNNNLKA---LSD----LPPLLEYLGVSNN-QLEK-LP-ELQN 151 (454)
T ss_dssp TCSEEECCS------SCCSS-CCCC---CTTCCEEECCSSCCSC---CCS----CCTTCCEEECCSS-CCSS-CC-CCTT
T ss_pred CCCEEEccC------CcCCc-cccc---cCCCcEEECCCCccCc---ccC----CCCCCCEEECcCC-CCCC-Cc-ccCC
Confidence 566666654 34444 3332 3566777776666653 221 1146777777766 5554 45 4666
Q ss_pred CCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceee
Q 037919 162 IADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKID 241 (397)
Q Consensus 162 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 241 (397)
+++|++|++++|.+++ +|.. .++|++|++++|++.+ +| .+.++++|++|++++|.+++ +|.. .++|++|+
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 6777777777776663 4432 2466777777776664 44 36666777777777766663 3322 24666777
Q ss_pred ccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCc
Q 037919 242 LGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTG 321 (397)
Q Consensus 242 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 321 (397)
+++|.++ .+| .++.+++|++|++++|++++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|++++
T Consensus 222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred CcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 7777666 455 36666667777777666663 3322 2456666666665554 2221 2444444444444443
Q ss_pred --CChhhc-------------cCC-CCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccc
Q 037919 322 --PIPNFF-------------SSL-NTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGE 385 (397)
Q Consensus 322 --~~~~~~-------------~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~ 385 (397)
.+|..+ ..+ ++|++|++++|++++ +|.. +++ |+.|++++|+++ .+|. ..+.+ +
T Consensus 292 l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~--L~~L~L~~N~l~-~lp~---~l~~L-~ 360 (454)
T 1jl5_A 292 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPR--LERLIASFNHLA-EVPE---LPQNL-K 360 (454)
T ss_dssp ESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTT--CCEEECCSSCCS-CCCC---CCTTC-C
T ss_pred ccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCc--CCEEECCCCccc-cccc---hhhhc-c
Confidence 111111 112 356666666666664 4433 344 666777777666 3554 23444 6
Q ss_pred eEeccCCcCC
Q 037919 386 RLDVRGNDKL 395 (397)
Q Consensus 386 ~l~l~~N~~~ 395 (397)
+|++++|+..
T Consensus 361 ~L~L~~N~l~ 370 (454)
T 1jl5_A 361 QLHVEYNPLR 370 (454)
T ss_dssp EEECCSSCCS
T ss_pred EEECCCCCCC
Confidence 6666666653
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.1e-29 Score=247.94 Aligned_cols=266 Identities=21% Similarity=0.200 Sum_probs=124.5
Q ss_pred ccccccCCCCCCEEEcCCCCCCCCC--ccChhhhCCCCCCCEEeCcCCCCCccc----CchhhcCCCCCCEEEcccccCC
Q 037919 103 ISDALLKLPYLKTLSIFNCFVSSPV--TLSPTLFGALSSLEHLALYSNPTLSGE----IPSSLAEIADLRVLSLSQNNLQ 176 (397)
Q Consensus 103 ~~~~l~~l~~L~~L~ls~~~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 176 (397)
++..+..+++|++|++++|.+.+.. .+....+...++|++|++++| .+++. ++..+..+++|++|++++|.+.
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 3445555555555555555443200 001111222345555555555 44432 2334444555555555555544
Q ss_pred CCCchhhc-----CCCCCCEEeeecCCCCCc----cChhccCCCCCCEEEccCCCCCCCCC-----ccccCCccCceeec
Q 037919 177 GNIPKELG-----RLVNLEQLDLSYNNLSGE----IPDEIGGMISLTVLDLSWNGLQGQVP-----PSLGTLQLLQKIDL 242 (397)
Q Consensus 177 ~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~l 242 (397)
+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++... ..+..+++|++|++
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 32222221 234555555555555432 34444455555555555555443211 11123455555555
Q ss_pred cCCcCCCC----CccccCCCCCCcEEEcccCCCCCCCcccCC-----CCCCCCeeeccCCcCCCC----CccccCCCCCC
Q 037919 243 GSNKLVGS----IPPAIGKLSRLVLLDLSQNCINGPIPETLS-----GLQQLQYLIVYHNPINSR----IPLFLGTLQNL 309 (397)
Q Consensus 243 ~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L 309 (397)
++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|
T Consensus 264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 55555432 333444455555555555555432221111 124555555555555443 22333444556
Q ss_pred CEEEcccccCCcCChhhccC-----CCCCCEEeCCCCcCCc----CCCccccCCCcCCCCEEEccCCcCcc
Q 037919 310 TSISVSECGLTGPIPNFFSS-----LNTLTALSLDNNNLSG----TVPPSLGSLPNSMLDQLNLSHNQLSG 371 (397)
Q Consensus 310 ~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~Ls~n~l~~----~~p~~~~~l~~~~L~~L~l~~N~l~g 371 (397)
++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++ |++|++++|++++
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~--L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS--LRELDLSNNCLGD 412 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC--CCEEECCSSSCCH
T ss_pred cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC--ccEEECCCCCCCH
Confidence 66666665555433332221 4456666666665554 44555555555 6666666665554
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2e-26 Score=209.59 Aligned_cols=217 Identities=25% Similarity=0.225 Sum_probs=189.0
Q ss_pred CchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCC
Q 037919 155 IPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTL 234 (397)
Q Consensus 155 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 234 (397)
+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 455443 589999999999997777789999999999999999997777789999999999999999998777889999
Q ss_pred ccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCC-CcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCC---
Q 037919 235 QLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGP-IPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLT--- 310 (397)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~--- 310 (397)
++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 9999999999999977776799999999999999999873 688999999999999999999987777776666666
Q ss_pred -EEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCC
Q 037919 311 -SISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFP 376 (397)
Q Consensus 311 -~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~ 376 (397)
+|++++|++++..+..+. ..+|++|++++|++++..+..+..+++ |+.|++++|++++..|.-
T Consensus 180 l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 180 LSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp EEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCS--CCEEECCSSCBCCCTTTT
T ss_pred eeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccccc--ccEEEccCCcccccCCch
Confidence 899999999966555554 458999999999999776667788999 999999999999887743
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.1e-29 Score=247.97 Aligned_cols=304 Identities=20% Similarity=0.196 Sum_probs=213.9
Q ss_pred ccEEEEEcCCCCCCCCccccccccccc-cCCC----CCCEEEcCCCCCCCCC-ccChhhhCCCCCCCEEeCcCCCCCccc
Q 037919 81 FHVTKVHIGPDIITPTCKISANISDAL-LKLP----YLKTLSIFNCFVSSPV-TLSPTLFGALSSLEHLALYSNPTLSGE 154 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~l-~~l~----~L~~L~ls~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~l~~~ 154 (397)
.+++.|++++ +.+.+..+..+ ..++ +|++|++++|.+.... ...+..+..+++|++|++++| .+.+.
T Consensus 56 ~~L~~L~Ls~------n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~ 128 (461)
T 1z7x_W 56 PALAELNLRS------NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDA 128 (461)
T ss_dssp TTCCEEECTT------CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHH
T ss_pred CCcCEEeCCC------CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchH
Confidence 3677777776 44444333222 2344 6888888888766321 122445677888888888888 56554
Q ss_pred Cchhhc-----CCCCCCEEEcccccCCCCC----chhhcCCCCCCEEeeecCCCCCccChhcc-----CCCCCCEEEccC
Q 037919 155 IPSSLA-----EIADLRVLSLSQNNLQGNI----PKELGRLVNLEQLDLSYNNLSGEIPDEIG-----GMISLTVLDLSW 220 (397)
Q Consensus 155 ~p~~l~-----~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~ 220 (397)
.+..+. ..++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+. ..++|++|++++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 444332 2467888888888777533 45556678888888888887654333332 356888888888
Q ss_pred CCCCCC----CCccccCCccCceeeccCCcCCCCC-----ccccCCCCCCcEEEcccCCCCCC----CcccCCCCCCCCe
Q 037919 221 NGLQGQ----VPPSLGTLQLLQKIDLGSNKLVGSI-----PPAIGKLSRLVLLDLSQNCINGP----IPETLSGLQQLQY 287 (397)
Q Consensus 221 n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~ 287 (397)
|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++
T Consensus 209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE
T ss_pred CCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce
Confidence 888754 4566777888999999988876432 22233578899999999988853 5666777889999
Q ss_pred eeccCCcCCCCCccccC-----CCCCCCEEEcccccCCcC----ChhhccCCCCCCEEeCCCCcCCcCCCccccC-----
Q 037919 288 LIVYHNPINSRIPLFLG-----TLQNLTSISVSECGLTGP----IPNFFSSLNTLTALSLDNNNLSGTVPPSLGS----- 353 (397)
Q Consensus 288 L~L~~n~l~~~~~~~~~-----~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~----- 353 (397)
|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..
T Consensus 289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 368 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP 368 (461)
T ss_dssp EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCC
Confidence 99999988654433332 336999999999999865 5667778899999999999998765554432
Q ss_pred CCcCCCCEEEccCCcCcc----ccCCChHHHhhccceEeccCCcC
Q 037919 354 LPNSMLDQLNLSHNQLSG----ELQFPEEFIERLGERLDVRGNDK 394 (397)
Q Consensus 354 l~~~~L~~L~l~~N~l~g----~~p~~~~~~~~l~~~l~l~~N~~ 394 (397)
.+. |++|++++|++++ .+|..+...+.+ ++|++++|+.
T Consensus 369 ~~~--L~~L~L~~n~i~~~~~~~l~~~l~~~~~L-~~L~l~~N~i 410 (461)
T 1z7x_W 369 GSV--LRVLWLADCDVSDSSCSSLAATLLANHSL-RELDLSNNCL 410 (461)
T ss_dssp TCC--CCEEECTTSCCCHHHHHHHHHHHHHCCCC-CEEECCSSSC
T ss_pred CCc--eEEEECCCCCCChhhHHHHHHHHHhCCCc-cEEECCCCCC
Confidence 567 9999999999986 677666666677 8999999975
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.3e-25 Score=203.59 Aligned_cols=208 Identities=25% Similarity=0.269 Sum_probs=184.2
Q ss_pred CCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeec
Q 037919 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDL 242 (397)
Q Consensus 163 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 242 (397)
...++++++++.++ .+|..+. +++++|++++|++.+..+..+.++++|++|++++|.++...+..+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35789999999998 5776554 68999999999999776778999999999999999998666666789999999999
Q ss_pred cCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcC
Q 037919 243 GSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGP 322 (397)
Q Consensus 243 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 322 (397)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99999977777788999999999999999987778889999999999999999987777789999999999999999977
Q ss_pred ChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCC
Q 037919 323 IPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQF 375 (397)
Q Consensus 323 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~ 375 (397)
.+..|..+++|++|++++|++++..+..+..+++ |+.|++++|++.+.-+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK--LKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT--CCEEECCSSCBCCSSSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccC--CCEEEecCCCeeCCCcc
Confidence 7778899999999999999999766667888999 99999999999876653
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=8.3e-26 Score=226.76 Aligned_cols=245 Identities=28% Similarity=0.284 Sum_probs=141.8
Q ss_pred cEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcC
Q 037919 82 HVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAE 161 (397)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~ 161 (397)
.++.+++++ +.++ .+|..+. ++|++|++++|.+. .+|. .+++|++|++++| .+++ +|. .
T Consensus 41 ~l~~L~ls~------n~L~-~lp~~l~--~~L~~L~L~~N~l~---~lp~----~l~~L~~L~Ls~N-~l~~-lp~---~ 99 (622)
T 3g06_A 41 GNAVLNVGE------SGLT-TLPDCLP--AHITTLVIPDNNLT---SLPA----LPPELRTLEVSGN-QLTS-LPV---L 99 (622)
T ss_dssp CCCEEECCS------SCCS-CCCSCCC--TTCSEEEECSCCCS---CCCC----CCTTCCEEEECSC-CCSC-CCC---C
T ss_pred CCcEEEecC------CCcC-ccChhhC--CCCcEEEecCCCCC---CCCC----cCCCCCEEEcCCC-cCCc-CCC---C
Confidence 477788876 4444 5565554 78888888888876 4554 5678888888888 6663 444 6
Q ss_pred CCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceee
Q 037919 162 IADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKID 241 (397)
Q Consensus 162 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 241 (397)
+++|++|++++|.+++ +|. .+++|++|++++|++++ +|.. +++|++|++++|.+++ +|. .+++|+.|+
T Consensus 100 l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~ 167 (622)
T 3g06_A 100 PPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLW 167 (622)
T ss_dssp CTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEE
Confidence 6888888888888874 444 45778888888888773 4542 4778888888887764 333 234556666
Q ss_pred ccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCC-----------------CCCCCCeeeccCCcCCCCCccccC
Q 037919 242 LGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLS-----------------GLQQLQYLIVYHNPINSRIPLFLG 304 (397)
Q Consensus 242 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----------------~l~~L~~L~L~~n~l~~~~~~~~~ 304 (397)
+++|.+++ +| ..+++|+.|++++|.+++ +|..+. .+++|++|++++|.+++ +| .
T Consensus 168 L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~ 238 (622)
T 3g06_A 168 AYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---V 238 (622)
T ss_dssp CCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---C
T ss_pred CCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---C
Confidence 66666553 33 234556666666665553 222110 12344444444444443 22 2
Q ss_pred CCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCC
Q 037919 305 TLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQF 375 (397)
Q Consensus 305 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~ 375 (397)
.+++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+..+++ |+.|++++|+++|.+|.
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~--L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSS--ETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCT--TCEEECCSCCCCHHHHH
T ss_pred CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccc--cCEEEecCCCCCCcCHH
Confidence 2344555555555544 2333 3344555555555554 44444555555 55555555555544443
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.7e-26 Score=208.84 Aligned_cols=209 Identities=24% Similarity=0.245 Sum_probs=185.6
Q ss_pred CCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEE
Q 037919 138 SSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLD 217 (397)
Q Consensus 138 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 217 (397)
++|++|++++| .+.+..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 57999999999 88888777999999999999999999877777899999999999999999987778899999999999
Q ss_pred ccCCCCCCCCCccccCCccCceeeccCCcCCCC-CccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCC----eeeccC
Q 037919 218 LSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGS-IPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQ----YLIVYH 292 (397)
Q Consensus 218 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~ 292 (397)
+++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ +|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999999977777899999999999999999864 588999999999999999999987677777666666 899999
Q ss_pred CcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCC
Q 037919 293 NPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348 (397)
Q Consensus 293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 348 (397)
|.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|.+++..|
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 999876665554 4589999999999997777778999999999999999997654
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=9.2e-26 Score=206.69 Aligned_cols=207 Identities=27% Similarity=0.272 Sum_probs=179.3
Q ss_pred hhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccC
Q 037919 158 SLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLL 237 (397)
Q Consensus 158 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 237 (397)
.+.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++. +. .+.+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 3677899999999999998 6676654 6899999999999988888899999999999999998853 32 2788999
Q ss_pred ceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccc
Q 037919 238 QKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSEC 317 (397)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 317 (397)
++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999997 67778888999999999999999777778999999999999999998887778888999999999999
Q ss_pred cCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCcccc
Q 037919 318 GLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGEL 373 (397)
Q Consensus 318 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~ 373 (397)
+++...+..+..+++|+.|++++|+++ .+|..+...+. |+.+++++|++...-
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~--L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL--LPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC--CSEEECCSCCBCCSG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccccc--CCeEEeCCCCccCcC
Confidence 998666667788999999999999998 78888888888 999999999987543
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=8.1e-25 Score=198.41 Aligned_cols=205 Identities=25% Similarity=0.275 Sum_probs=182.3
Q ss_pred CCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEc
Q 037919 139 SLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDL 218 (397)
Q Consensus 139 ~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 218 (397)
..++++++++ .++. +|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++...+..+..+++|++|++
T Consensus 17 ~~~~l~~~~~-~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTS-CCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCC-CCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 5689999998 6764 565554 68999999999999766678999999999999999999665666789999999999
Q ss_pred cCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCC
Q 037919 219 SWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSR 298 (397)
Q Consensus 219 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 298 (397)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99999977777889999999999999999988778889999999999999999976666789999999999999999998
Q ss_pred CccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCC
Q 037919 299 IPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTV 347 (397)
Q Consensus 299 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 347 (397)
.+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+...-
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 8888999999999999999999777777899999999999999998654
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.3e-25 Score=203.99 Aligned_cols=208 Identities=26% Similarity=0.262 Sum_probs=102.4
Q ss_pred CCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCC
Q 037919 135 GALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLT 214 (397)
Q Consensus 135 ~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 214 (397)
..+++|++|++++| .+.. ...+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~-~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNS-DIKS--VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTS-CCCC--CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCC-Cccc--ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34555666666655 3332 1235555555555555555543 2 2455555555555555555544444445555555
Q ss_pred EEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCc
Q 037919 215 VLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNP 294 (397)
Q Consensus 215 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 294 (397)
+|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 55555555554444444555555555555555544433344445555555555555544333344444455555555555
Q ss_pred CCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCC
Q 037919 295 INSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSL 354 (397)
Q Consensus 295 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 354 (397)
+++..+..+..+++|++|++++|.+.+. +++|+.|+++.|.++|.+|..++.+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 4444444444444455555544444321 2334444444444444444444443
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.5e-25 Score=203.39 Aligned_cols=207 Identities=22% Similarity=0.244 Sum_probs=137.3
Q ss_pred hcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCc
Q 037919 159 LAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQ 238 (397)
Q Consensus 159 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 238 (397)
+..+++|++|++++|.+.. + ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4456677777777776652 2 245666777777777777664 2 3566677777777777777655555566777777
Q ss_pred eeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEccccc
Q 037919 239 KIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECG 318 (397)
Q Consensus 239 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 318 (397)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 77777777766555556667777777777777765555556667777777777777766656566667777777777777
Q ss_pred CCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChH
Q 037919 319 LTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEE 378 (397)
Q Consensus 319 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~ 378 (397)
+++..+..+..+++|++|++++|.+.+. +|. ++.++++.|+++|.+|..+.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~--l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPG--IRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTT--THHHHHHHHHTGGGBBCTTS
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcH--HHHHHHHHHhCCCcccCccc
Confidence 7766666666677777777777766643 334 66667777777777766543
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.3e-24 Score=199.12 Aligned_cols=205 Identities=27% Similarity=0.249 Sum_probs=182.7
Q ss_pred hCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCC
Q 037919 134 FGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISL 213 (397)
Q Consensus 134 ~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 213 (397)
+++++++++++++++ .++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++. +. ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~-~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTS-CCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred ccccCCccEEECCCC-CCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 578899999999998 776 4555553 7899999999999987788899999999999999999854 33 2789999
Q ss_pred CEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCC
Q 037919 214 TVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHN 293 (397)
Q Consensus 214 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 293 (397)
++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 67888899999999999999999877788999999999999999999777777889999999999999
Q ss_pred cCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcC
Q 037919 294 PINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGT 346 (397)
Q Consensus 294 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 346 (397)
++++..+..+..+++|++|++++|+++ .+|..+...++|+.|++++|.+...
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 999877777889999999999999998 7888888889999999999998753
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=6.6e-24 Score=212.99 Aligned_cols=230 Identities=27% Similarity=0.312 Sum_probs=166.1
Q ss_pred ccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhc
Q 037919 81 FHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLA 160 (397)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~ 160 (397)
.+++.|++++ +.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++| .+++. |.
T Consensus 61 ~~L~~L~L~~------N~l~-~lp~---~l~~L~~L~Ls~N~l~---~lp~----~l~~L~~L~Ls~N-~l~~l-~~--- 118 (622)
T 3g06_A 61 AHITTLVIPD------NNLT-SLPA---LPPELRTLEVSGNQLT---SLPV----LPPGLLELSIFSN-PLTHL-PA--- 118 (622)
T ss_dssp TTCSEEEECS------CCCS-CCCC---CCTTCCEEEECSCCCS---CCCC----CCTTCCEEEECSC-CCCCC-CC---
T ss_pred CCCcEEEecC------CCCC-CCCC---cCCCCCEEEcCCCcCC---cCCC----CCCCCCEEECcCC-cCCCC-CC---
Confidence 4788888886 4444 3444 5788999999998877 4553 6788888888888 66653 33
Q ss_pred CCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhc-----------------cCCCCCCEEEccCCCC
Q 037919 161 EIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEI-----------------GGMISLTVLDLSWNGL 223 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----------------~~l~~L~~L~l~~n~l 223 (397)
.+++|++|++++|.+++ +|.. +++|++|++++|.+++ +|..+ ..+++|+.|++++|.+
T Consensus 119 ~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 119 LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL 193 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCC
Confidence 45677777777777763 4442 3667777777777663 23211 1225666677776666
Q ss_pred CCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCcccc
Q 037919 224 QGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL 303 (397)
Q Consensus 224 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 303 (397)
++ +|. .+++|+.|++++|.++ .+|. .+++|+.|++++|.+++ +| ..+++|++|++++|.++. +|.
T Consensus 194 ~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~-- 258 (622)
T 3g06_A 194 AS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM-- 258 (622)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC--
T ss_pred CC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc--
Confidence 63 332 2356777777777766 3333 24789999999999985 55 456899999999999986 443
Q ss_pred CCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCC
Q 037919 304 GTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSL 354 (397)
Q Consensus 304 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 354 (397)
.+++|+.|++++|+++ .+|..+..+++|+.|+|++|.+++..|..+..+
T Consensus 259 -~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp -CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred -ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 5689999999999999 789899999999999999999999888766543
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=1.4e-26 Score=216.50 Aligned_cols=264 Identities=18% Similarity=0.257 Sum_probs=163.9
Q ss_pred CccceEcCCCCCCCCcccEEEEEcCCCCCCCCccccccccccccCC--CCCCEEEcCCCCCCCCCccChhhhCCCCCCCE
Q 037919 65 PWPGVECEIGEDDPSIFHVTKVHIGPDIITPTCKISANISDALLKL--PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEH 142 (397)
Q Consensus 65 ~w~gv~C~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~ 142 (397)
.|.++.|+.. .++.+++++ +.+. +..+..+ ++++.|++++|.+.+ .++. +..+++|++
T Consensus 38 ~W~~~~~~~~-------~~~~l~l~~------~~~~---~~~~~~~~~~~l~~L~l~~n~l~~---~~~~-~~~~~~L~~ 97 (336)
T 2ast_B 38 RWYRLASDES-------LWQTLDLTG------KNLH---PDVTGRLLSQGVIAFRCPRSFMDQ---PLAE-HFSPFRVQH 97 (336)
T ss_dssp HHHHHHTCST-------TSSEEECTT------CBCC---HHHHHHHHHTTCSEEECTTCEECS---CCCS-CCCCBCCCE
T ss_pred HHHHHhcCch-------hheeecccc------ccCC---HHHHHhhhhccceEEEcCCccccc---cchh-hccCCCCCE
Confidence 4999888643 466777775 2332 3445555 788888888887764 2222 346788888
Q ss_pred EeCcCCCCCccc-CchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecC-CCCCc-cChhccCCCCCCEEEcc
Q 037919 143 LALYSNPTLSGE-IPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYN-NLSGE-IPDEIGGMISLTVLDLS 219 (397)
Q Consensus 143 L~l~~n~~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~ 219 (397)
|++++| .+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|+++
T Consensus 98 L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 98 MDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp EECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred EEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 888888 56654 6777778888888888888777667777777888888888887 56642 55556777778888887
Q ss_pred CC-CCCCC-CCccccCCc-cCceeeccCC--cCC-CCCccccCCCCCCcEEEcccCC-CCCCCcccCCCCCCCCeeeccC
Q 037919 220 WN-GLQGQ-VPPSLGTLQ-LLQKIDLGSN--KLV-GSIPPAIGKLSRLVLLDLSQNC-INGPIPETLSGLQQLQYLIVYH 292 (397)
Q Consensus 220 ~n-~l~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~ 292 (397)
+| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++
T Consensus 177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 77 66643 455566677 7777777776 333 2344455566666666666666 5545555566666666666666
Q ss_pred Cc-CCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCcccc
Q 037919 293 NP-INSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLG 352 (397)
Q Consensus 293 n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 352 (397)
|. ++......+..+++|++|++++| ++...-..+. .++..|++++|.+++..|..++
T Consensus 257 ~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 257 CYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 63 22222223455566666666655 3322211111 2244445556666655554443
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=1.7e-26 Score=220.42 Aligned_cols=195 Identities=18% Similarity=0.225 Sum_probs=104.9
Q ss_pred cccccccCCCCCCEEEcCCCCCCCCCc-cChhhhCCCCCCCEEeCcCC--CCCcccCchhh-------cCCCCCCEEEcc
Q 037919 102 NISDALLKLPYLKTLSIFNCFVSSPVT-LSPTLFGALSSLEHLALYSN--PTLSGEIPSSL-------AEIADLRVLSLS 171 (397)
Q Consensus 102 ~~~~~l~~l~~L~~L~ls~~~~~~~~~-~~~~~~~~l~~L~~L~l~~n--~~l~~~~p~~l-------~~l~~L~~L~L~ 171 (397)
.++..+..+++|++|++++|.+..... .....+..+++|++|++++| ..+.+.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 355667777888888888887663100 01123567777788877775 24445555544 566777777777
Q ss_pred cccCCC----CCchhhcCCCCCCEEeeecCCCCCccChh----ccCC---------CCCCEEEccCCCCC-CCCC---cc
Q 037919 172 QNNLQG----NIPKELGRLVNLEQLDLSYNNLSGEIPDE----IGGM---------ISLTVLDLSWNGLQ-GQVP---PS 230 (397)
Q Consensus 172 ~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----l~~l---------~~L~~L~l~~n~l~-~~~~---~~ 230 (397)
+|.+.+ .++..+..+++|++|++++|.+++..+.. +..+ ++|++|++++|+++ +.++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777665 24555666677777777777665332222 2222 56666666666654 2222 23
Q ss_pred ccCCccCceeeccCCcCCC-----CCccccCCCCCCcEEEcccCCCC----CCCcccCCCCCCCCeeeccCCcCC
Q 037919 231 LGTLQLLQKIDLGSNKLVG-----SIPPAIGKLSRLVLLDLSQNCIN----GPIPETLSGLQQLQYLIVYHNPIN 296 (397)
Q Consensus 231 l~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~ 296 (397)
+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ ..+|..+..+++|++|++++|.++
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 4445555555555555441 11113444445555555555443 233444444444444444444443
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=1.2e-26 Score=221.38 Aligned_cols=239 Identities=26% Similarity=0.311 Sum_probs=196.4
Q ss_pred hhCCCCCCCEEeCcCCCCCcccCc----hhhcCCCCCCEEEccccc---CCCCCchhh-------cCCCCCCEEeeecCC
Q 037919 133 LFGALSSLEHLALYSNPTLSGEIP----SSLAEIADLRVLSLSQNN---LQGNIPKEL-------GRLVNLEQLDLSYNN 198 (397)
Q Consensus 133 ~~~~l~~L~~L~l~~n~~l~~~~p----~~l~~l~~L~~L~L~~n~---l~~~~~~~l-------~~l~~L~~L~L~~n~ 198 (397)
.+..+++|++|++++| .+++..+ ..+..+++|++|+|++|. +.+.+|..+ ..+++|++|++++|.
T Consensus 27 ~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 4678899999999999 7776644 447789999999999964 445566655 789999999999999
Q ss_pred CCC----ccChhccCCCCCCEEEccCCCCCCCCCccc----cCC---------ccCceeeccCCcCC-CCCc---cccCC
Q 037919 199 LSG----EIPDEIGGMISLTVLDLSWNGLQGQVPPSL----GTL---------QLLQKIDLGSNKLV-GSIP---PAIGK 257 (397)
Q Consensus 199 l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l----~~l---------~~L~~L~l~~n~l~-~~~~---~~l~~ 257 (397)
+.+ .++..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|.++ +.++ ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 997 477788999999999999999864433333 334 89999999999997 3344 45667
Q ss_pred CCCCcEEEcccCCCCC-----CCcccCCCCCCCCeeeccCCcCC----CCCccccCCCCCCCEEEcccccCCcC----Ch
Q 037919 258 LSRLVLLDLSQNCING-----PIPETLSGLQQLQYLIVYHNPIN----SRIPLFLGTLQNLTSISVSECGLTGP----IP 324 (397)
Q Consensus 258 l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~L~~L~L~~n~l~~~----~~ 324 (397)
+++|++|++++|.++. ..+..+..+++|++|++++|.++ ..++..+..+++|++|+|++|.+++. ++
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 8999999999999983 23447888999999999999996 55677788899999999999999875 56
Q ss_pred hhc--cCCCCCCEEeCCCCcCCc----CCCccc-cCCCcCCCCEEEccCCcCccccC
Q 037919 325 NFF--SSLNTLTALSLDNNNLSG----TVPPSL-GSLPNSMLDQLNLSHNQLSGELQ 374 (397)
Q Consensus 325 ~~~--~~~~~L~~L~Ls~n~l~~----~~p~~~-~~l~~~~L~~L~l~~N~l~g~~p 374 (397)
..+ +.+++|++|+|++|.+++ .+|..+ .++++ |+.|++++|++++..+
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~--L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD--LLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT--CCEEECTTSBSCTTSH
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC--ceEEEccCCcCCcchh
Confidence 666 448999999999999997 477777 56899 9999999999998775
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=3.8e-26 Score=213.66 Aligned_cols=254 Identities=16% Similarity=0.157 Sum_probs=208.0
Q ss_pred CCCEEEcCCCCCCCCCccChhhhCCC--CCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCC-CchhhcCCCC
Q 037919 112 YLKTLSIFNCFVSSPVTLSPTLFGAL--SSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGN-IPKELGRLVN 188 (397)
Q Consensus 112 ~L~~L~ls~~~~~~~~~~~~~~~~~l--~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~ 188 (397)
.++.++++++.+. +..+..+ +++++|++++| .+.+..+. +..+++|++|++++|.+.+. ++..+..+++
T Consensus 48 ~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hheeeccccccCC------HHHHHhhhhccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 4789999988654 3456666 89999999999 77776655 56799999999999998765 7888899999
Q ss_pred CCEEeeecCCCCCccChhccCCCCCCEEEccCC-CCCCC-CCccccCCccCceeeccCC-cCCCC-CccccCCCC-CCcE
Q 037919 189 LEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWN-GLQGQ-VPPSLGTLQLLQKIDLGSN-KLVGS-IPPAIGKLS-RLVL 263 (397)
Q Consensus 189 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~ 263 (397)
|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 999999999999888888999999999999999 67653 5666888999999999999 88754 566678899 9999
Q ss_pred EEcccC--CCC-CCCcccCCCCCCCCeeeccCCc-CCCCCccccCCCCCCCEEEccccc-CCcCChhhccCCCCCCEEeC
Q 037919 264 LDLSQN--CIN-GPIPETLSGLQQLQYLIVYHNP-INSRIPLFLGTLQNLTSISVSECG-LTGPIPNFFSSLNTLTALSL 338 (397)
Q Consensus 264 L~l~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L 338 (397)
|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|++|++
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 999999 555 4567777889999999999999 777777788999999999999995 44333346788999999999
Q ss_pred CCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChH
Q 037919 339 DNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEE 378 (397)
Q Consensus 339 s~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~ 378 (397)
++| ++......+. .. +..|++++|+++|..|....
T Consensus 280 ~~~-i~~~~~~~l~--~~--l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 280 FGI-VPDGTLQLLK--EA--LPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTS-SCTTCHHHHH--HH--STTSEESCCCSCCTTCSSCS
T ss_pred cCc-cCHHHHHHHH--hh--CcceEEecccCccccCCccc
Confidence 999 5543323332 23 56677999999999987654
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=9.6e-25 Score=201.97 Aligned_cols=202 Identities=20% Similarity=0.223 Sum_probs=142.3
Q ss_pred CCCCCEEEcccccCCCCCchhh--cCCCCCCEEeeecCCCCCccC----hhccCCCCCCEEEccCCCCCCCCCccccCCc
Q 037919 162 IADLRVLSLSQNNLQGNIPKEL--GRLVNLEQLDLSYNNLSGEIP----DEIGGMISLTVLDLSWNGLQGQVPPSLGTLQ 235 (397)
Q Consensus 162 l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 235 (397)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..+..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3557777777777776666666 667777777777777765444 2334577777777777777766666777777
Q ss_pred cCceeeccCCcCCCC--C--ccccCCCCCCcEEEcccCCCCCCCcc----cCCCCCCCCeeeccCCcCCCCCccccCCC-
Q 037919 236 LLQKIDLGSNKLVGS--I--PPAIGKLSRLVLLDLSQNCINGPIPE----TLSGLQQLQYLIVYHNPINSRIPLFLGTL- 306 (397)
Q Consensus 236 ~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~~- 306 (397)
+|++|++++|++.+. + +..+..+++|++|++++|+++. ++. .+..+++|++|++++|.+++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 777777777776532 1 1223567778888888887763 222 24567788888888888877766666555
Q ss_pred --CCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCcc
Q 037919 307 --QNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG 371 (397)
Q Consensus 307 --~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g 371 (397)
++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++ |+.|++++|+++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~--L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE--VDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC--CSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC--ccEEECcCCCCCC
Confidence 68888888888888 6676554 7888888888888853 33 567777 8889999888874
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=201.32 Aligned_cols=200 Identities=20% Similarity=0.191 Sum_probs=107.4
Q ss_pred CCCCEEeCcCCCCCcccCchhh--cCCCCCCEEEcccccCCCCCc----hhhcCCCCCCEEeeecCCCCCccChhccCCC
Q 037919 138 SSLEHLALYSNPTLSGEIPSSL--AEIADLRVLSLSQNNLQGNIP----KELGRLVNLEQLDLSYNNLSGEIPDEIGGMI 211 (397)
Q Consensus 138 ~~L~~L~l~~n~~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 211 (397)
++|++|++++| .+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 91 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 44666666666 5555555555 556666666666666554333 2234455666666666666555555555666
Q ss_pred CCCEEEccCCCCCCC--C--CccccCCccCceeeccCCcCCCCCcc----ccCCCCCCcEEEcccCCCCCCCcccCCCC-
Q 037919 212 SLTVLDLSWNGLQGQ--V--PPSLGTLQLLQKIDLGSNKLVGSIPP----AIGKLSRLVLLDLSQNCINGPIPETLSGL- 282 (397)
Q Consensus 212 ~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l- 282 (397)
+|++|++++|++.+. + +..++.+++|++|++++|.++. ++. .+..+++|++|++++|++++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 666666666654421 1 1122455566666666665542 121 13445566666666666655545444444
Q ss_pred --CCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCC
Q 037919 283 --QQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLS 344 (397)
Q Consensus 283 --~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 344 (397)
++|++|++++|.++. +|..+. ++|++|++++|++++. |. +..+++|+.|++++|.++
T Consensus 249 ~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 466666666666653 343332 5566666666666532 22 345556666666666554
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2.1e-25 Score=211.01 Aligned_cols=250 Identities=19% Similarity=0.218 Sum_probs=189.8
Q ss_pred ccccccccccccCCCCCCEEEcCCCCCCCCCccCh----hhhCCCC-CCCEEeCcCCCCCcccCchhhcCC-----CCCC
Q 037919 97 CKISANISDALLKLPYLKTLSIFNCFVSSPVTLSP----TLFGALS-SLEHLALYSNPTLSGEIPSSLAEI-----ADLR 166 (397)
Q Consensus 97 ~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~n~~l~~~~p~~l~~l-----~~L~ 166 (397)
+.++|.+|..+...++|++|++++|.+. ..+. ..|..++ +|++|++++| .+++..+..+..+ ++|+
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGG---GSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCC---hHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCcc
Confidence 5778888887777778999999999887 4454 5678888 8999999999 8888777777664 9999
Q ss_pred EEEcccccCCCCCchhh----cCC-CCCCEEeeecCCCCCccChhc----cC-CCCCCEEEccCCCCCCCCCc----ccc
Q 037919 167 VLSLSQNNLQGNIPKEL----GRL-VNLEQLDLSYNNLSGEIPDEI----GG-MISLTVLDLSWNGLQGQVPP----SLG 232 (397)
Q Consensus 167 ~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~~----~l~ 232 (397)
+|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.... .+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 99999999987766644 344 899999999999986655443 34 35899999999998854433 344
Q ss_pred CCc-cCceeeccCCcCCCCCcccc----CCC-CCCcEEEcccCCCCCC----CcccCCC-CCCCCeeeccCCcCCCCCc-
Q 037919 233 TLQ-LLQKIDLGSNKLVGSIPPAI----GKL-SRLVLLDLSQNCINGP----IPETLSG-LQQLQYLIVYHNPINSRIP- 300 (397)
Q Consensus 233 ~l~-~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~~~~- 300 (397)
.++ +|++|++++|.+++..+..+ ... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..+
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 555 89999999999887665433 344 5899999999998863 4445544 4589999999999877554
Q ss_pred ---cccCCCCCCCEEEcccccCCcC-------ChhhccCCCCCCEEeCCCCcCCcCCCcc
Q 037919 301 ---LFLGTLQNLTSISVSECGLTGP-------IPNFFSSLNTLTALSLDNNNLSGTVPPS 350 (397)
Q Consensus 301 ---~~~~~~~~L~~L~L~~n~l~~~-------~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 350 (397)
..+..+++|++|++++|.+.+. ++..+..+++|+.||+++|.+.+..+..
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 3456778899999999985433 3345677888999999999988665543
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=6.9e-24 Score=188.71 Aligned_cols=200 Identities=18% Similarity=0.215 Sum_probs=107.6
Q ss_pred CCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEccc-ccCCCCCchhhcCCCCCC
Q 037919 112 YLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQ-NNLQGNIPKELGRLVNLE 190 (397)
Q Consensus 112 ~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~ 190 (397)
+|++|++++|.+. .+++..|+++++|++|++++|..+....+..|.++++|++|++++ |.+++..+..|.++++|+
T Consensus 32 ~l~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHLR---TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCCS---EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred cccEEEEeCCcce---EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 6677777776665 455555566666666666666224444444555555566666555 555543334455555555
Q ss_pred EEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCC-cCCCCCccccCCCCCCc-EEEccc
Q 037919 191 QLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSN-KLVGSIPPAIGKLSRLV-LLDLSQ 268 (397)
Q Consensus 191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~ 268 (397)
+|++++|.+++ +|. +..+++|+ .|++|++++| .+++..+..|..+++|+ +|++++
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred EEeCCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 55555555543 333 44444444 0015555555 44433334455555555 566655
Q ss_pred CCCCCCCcccCCCCCCCCeeeccCCc-CCCCCccccCCC-CCCCEEEcccccCCcCChhhccCCCCCCEEeCCCC
Q 037919 269 NCINGPIPETLSGLQQLQYLIVYHNP-INSRIPLFLGTL-QNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNN 341 (397)
Q Consensus 269 n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 341 (397)
|.++ .+|......++|++|++++|+ +++..+..+..+ ++|++|++++|+++ .+|.. .+++|+.|+++++
T Consensus 166 n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 5555 333322222566666666663 655545556666 66667777766666 33332 4566667766654
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=5.5e-25 Score=208.09 Aligned_cols=255 Identities=18% Similarity=0.228 Sum_probs=192.0
Q ss_pred EEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCc----hhhcCCC-CCCEEEcccccCCCCCchhhcCC---
Q 037919 115 TLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIP----SSLAEIA-DLRVLSLSQNNLQGNIPKELGRL--- 186 (397)
Q Consensus 115 ~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l--- 186 (397)
.+.++.+.+++ ..+.++...++|++|++++| .+++..+ ..+.+++ +|++|++++|.+.+..+..+..+
T Consensus 2 ~~~ls~n~~~~---~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSN---PVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCC---HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchH---HHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 35677777774 34555667777999999999 7887766 7788888 89999999999987777776664
Q ss_pred --CCCCEEeeecCCCCCccChh----ccCC-CCCCEEEccCCCCCCCCCcccc----C-CccCceeeccCCcCCCCCc--
Q 037919 187 --VNLEQLDLSYNNLSGEIPDE----IGGM-ISLTVLDLSWNGLQGQVPPSLG----T-LQLLQKIDLGSNKLVGSIP-- 252 (397)
Q Consensus 187 --~~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~l~----~-l~~L~~L~l~~n~l~~~~~-- 252 (397)
++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++...
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 89999999999988666653 4445 8999999999998866555443 3 3689999999999886443
Q ss_pred --cccCCCC-CCcEEEcccCCCCCCCccc----CCCC-CCCCeeeccCCcCCCCC----ccccCC-CCCCCEEEcccccC
Q 037919 253 --PAIGKLS-RLVLLDLSQNCINGPIPET----LSGL-QQLQYLIVYHNPINSRI----PLFLGT-LQNLTSISVSECGL 319 (397)
Q Consensus 253 --~~l~~l~-~L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~----~~~~~~-~~~L~~L~L~~n~l 319 (397)
..+...+ +|++|++++|.+++..+.. +... ++|++|++++|.+++.. +..+.. .++|++|++++|.+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 3334554 8999999999998765543 3445 58999999999987643 333333 46899999999999
Q ss_pred CcCCh----hhccCCCCCCEEeCCCCcCCcC-------CCccccCCCcCCCCEEEccCCcCccccCC
Q 037919 320 TGPIP----NFFSSLNTLTALSLDNNNLSGT-------VPPSLGSLPNSMLDQLNLSHNQLSGELQF 375 (397)
Q Consensus 320 ~~~~~----~~~~~~~~L~~L~Ls~n~l~~~-------~p~~~~~l~~~~L~~L~l~~N~l~g~~p~ 375 (397)
++..+ ..+..+++|+.|++++|.+.+. ++..+..++. |+.|++++|++.+..+.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~--L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK--IILVDKNGKEIHPSHSI 302 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE--EEEECTTSCBCCGGGCH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc--eEEEecCCCcCCCcchH
Confidence 87554 4457778999999999985533 2335667788 99999999999877443
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.7e-23 Score=186.09 Aligned_cols=196 Identities=17% Similarity=0.235 Sum_probs=137.7
Q ss_pred CCCEEEcccccCCCCCchhhcCCCCCCEEeeecCC-CCCccChhccCCCCCCEEEccC-CCCCCCCCccccCCccCceee
Q 037919 164 DLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNN-LSGEIPDEIGGMISLTVLDLSW-NGLQGQVPPSLGTLQLLQKID 241 (397)
Q Consensus 164 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~ 241 (397)
+|++|++++|++++..+..+.++++|++|++++|. ++...+..+.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666664444456666677777777665 5544444566677777777776 666655555667777777777
Q ss_pred ccCCcCCCCCccccCCCCCCc---EEEcccC-CCCCCCcccCCCCCCCC-eeeccCCcCCCCCccccCCCCCCCEEEccc
Q 037919 242 LGSNKLVGSIPPAIGKLSRLV---LLDLSQN-CINGPIPETLSGLQQLQ-YLIVYHNPINSRIPLFLGTLQNLTSISVSE 316 (397)
Q Consensus 242 l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 316 (397)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++...+..+.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 77777765 454 66777777 8999998 88766566688888888 8888888887544444444 7888888888
Q ss_pred cc-CCcCChhhccCC-CCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCC
Q 037919 317 CG-LTGPIPNFFSSL-NTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHN 367 (397)
Q Consensus 317 n~-l~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N 367 (397)
|+ +++..+..|..+ ++|+.|++++|++++ +|.. .+++ ++.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~--L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEH--LKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTT--CSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--Hhcc--CceeeccCc
Confidence 84 876666777888 888888888888874 4443 4556 788888776
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=5e-23 Score=184.53 Aligned_cols=183 Identities=22% Similarity=0.239 Sum_probs=166.1
Q ss_pred CCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEc
Q 037919 187 VNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDL 266 (397)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 266 (397)
...++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45788999999988 5676554 68999999999999888888999999999999999999888888999999999999
Q ss_pred ccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcC
Q 037919 267 SQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGT 346 (397)
Q Consensus 267 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 346 (397)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999987778889999999999999999988777889999999999999999977777899999999999999999987
Q ss_pred CCccccCCCcCCCCEEEccCCcCccccC
Q 037919 347 VPPSLGSLPNSMLDQLNLSHNQLSGELQ 374 (397)
Q Consensus 347 ~p~~~~~l~~~~L~~L~l~~N~l~g~~p 374 (397)
.+..+..+++ |+.|++++|++++...
T Consensus 171 ~~~~~~~l~~--L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 171 PHGAFDRLGK--LQTITLFGNQFDCSRC 196 (251)
T ss_dssp CTTTTTTCTT--CCEEECCSCCBCTTST
T ss_pred CHHHHhCCCC--CCEEEeeCCceeCCcc
Confidence 7778999999 9999999999998744
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=7.2e-23 Score=183.50 Aligned_cols=181 Identities=23% Similarity=0.275 Sum_probs=165.6
Q ss_pred CCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeec
Q 037919 163 ADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDL 242 (397)
Q Consensus 163 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 242 (397)
...++++++++.++ .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45788999999998 6776664 68999999999999888888999999999999999999888888999999999999
Q ss_pred cCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcC
Q 037919 243 GSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGP 322 (397)
Q Consensus 243 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 322 (397)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999987778889999999999999999977777789999999999999999988777899999999999999999988
Q ss_pred ChhhccCCCCCCEEeCCCCcCCcC
Q 037919 323 IPNFFSSLNTLTALSLDNNNLSGT 346 (397)
Q Consensus 323 ~~~~~~~~~~L~~L~Ls~n~l~~~ 346 (397)
.+..+..+++|+.|++++|.+.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 788899999999999999999876
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=2.6e-23 Score=192.12 Aligned_cols=195 Identities=27% Similarity=0.401 Sum_probs=135.2
Q ss_pred ccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCC
Q 037919 107 LLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRL 186 (397)
Q Consensus 107 l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 186 (397)
+.++++|++|++++|.+. .++ .+..+++|++|++++| .+.+..+ +..+++|++|++++|.+.+ ++ .+..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~---~l~--~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l 106 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT---TIE--GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGL 106 (308)
T ss_dssp HHHHHTCCEEECTTSCCC---CCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTC
T ss_pred HHHcCCcCEEEeeCCCcc---Cch--hhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCC
Confidence 446778888888887766 333 2567788888888887 6665433 7777888888888887764 33 57777
Q ss_pred CCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEc
Q 037919 187 VNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDL 266 (397)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 266 (397)
++|++|++++|.+++ ++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +. +..+++|+.|++
T Consensus 107 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 107 QSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKA 180 (308)
T ss_dssp TTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEEC
Confidence 788888888887774 333 6777778888887777764322 66777777777777777643 22 667777777777
Q ss_pred ccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCc
Q 037919 267 SQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTG 321 (397)
Q Consensus 267 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 321 (397)
++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 181 ~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 7777764332 6667777777777777766442 5667777777777777763
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=4.2e-23 Score=190.71 Aligned_cols=195 Identities=24% Similarity=0.385 Sum_probs=158.3
Q ss_pred hCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCC
Q 037919 134 FGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISL 213 (397)
Q Consensus 134 ~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 213 (397)
+..+++|++|++++| .+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+ ++ .+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTC
T ss_pred HHHcCCcCEEEeeCC-CccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCC
Confidence 356789999999998 6654 33 68889999999999999874 444 8889999999999999874 33 58889999
Q ss_pred CEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCC
Q 037919 214 TVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHN 293 (397)
Q Consensus 214 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 293 (397)
++|++++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. +. +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCC
Confidence 999999999885 33 38888999999999998875433 77888999999999988854 33 788889999999999
Q ss_pred cCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCc
Q 037919 294 PINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSG 345 (397)
Q Consensus 294 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~ 345 (397)
.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+++
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 8877544 6778899999999999885543 7888899999999998874
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.5e-21 Score=169.80 Aligned_cols=160 Identities=23% Similarity=0.197 Sum_probs=97.8
Q ss_pred CCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCC
Q 037919 111 PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190 (397)
Q Consensus 111 ~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 190 (397)
++|++|++++|.+. .+++..|+.+++|++|++++| .+.+..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNSLK---SLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp TTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEcCCCccC---cCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 46778888877776 455666677777777777777 66655555566677777777777776654444456666666
Q ss_pred EEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCC
Q 037919 191 QLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNC 270 (397)
Q Consensus 191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 270 (397)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|.
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINK 176 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHh
Confidence 66666666665444445666666666666666664444445555666666665554432 23345555555555
Q ss_pred CCCCCcccCCC
Q 037919 271 INGPIPETLSG 281 (397)
Q Consensus 271 l~~~~~~~l~~ 281 (397)
++|.+|..++.
T Consensus 177 ~~g~ip~~~~~ 187 (208)
T 2o6s_A 177 HSGVVRNSAGS 187 (208)
T ss_dssp CTTTBBCTTSS
T ss_pred CCceeeccCcc
Confidence 55555544443
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=1.6e-21 Score=193.49 Aligned_cols=187 Identities=25% Similarity=0.328 Sum_probs=93.0
Q ss_pred CCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeecc
Q 037919 164 DLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLG 243 (397)
Q Consensus 164 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 243 (397)
+|++|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 44444444444443 333321 34555555555444 333 234455555555555543 333 332 45555555
Q ss_pred CCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCC
Q 037919 244 SNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPI 323 (397)
Q Consensus 244 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 323 (397)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|+|++|+++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 555543 333 34555555555555553 333 34455555555555554 333 33 55555666555555 44
Q ss_pred hhhccCCCCC-------CEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHH
Q 037919 324 PNFFSSLNTL-------TALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFI 380 (397)
Q Consensus 324 ~~~~~~~~~L-------~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~ 380 (397)
|. +.. +| +.|+|++|+|+ .+|..+..+++ |+.|++++|+++|.+|..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~--L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP--TCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT--TEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC--CCEEEeeCCcCCCcCHHHHHHh
Confidence 44 332 44 66666666666 45555555666 6666666666666665554433
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.8e-21 Score=167.97 Aligned_cols=160 Identities=27% Similarity=0.231 Sum_probs=71.0
Q ss_pred CCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcc
Q 037919 188 NLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLS 267 (397)
Q Consensus 188 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 267 (397)
+|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333333444444444444444443333333444444444444444443333334444444444444
Q ss_pred cCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCC
Q 037919 268 QNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTV 347 (397)
Q Consensus 268 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 347 (397)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|++|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 444443333334444444444444444444333334444455555555444332 2334445555555555555
Q ss_pred CccccCC
Q 037919 348 PPSLGSL 354 (397)
Q Consensus 348 p~~~~~l 354 (397)
|..++.+
T Consensus 182 p~~~~~l 188 (208)
T 2o6s_A 182 RNSAGSV 188 (208)
T ss_dssp BCTTSSB
T ss_pred eccCccc
Confidence 5444443
No 94
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=7.5e-24 Score=213.12 Aligned_cols=301 Identities=14% Similarity=0.067 Sum_probs=138.8
Q ss_pred cEEEEEcCCCCCCCCcccccc----ccccccCCCCCCEEEcCCCCCCCCC-ccChhhhCCCCCCCEEeCcCCCCCcccCc
Q 037919 82 HVTKVHIGPDIITPTCKISAN----ISDALLKLPYLKTLSIFNCFVSSPV-TLSPTLFGALSSLEHLALYSNPTLSGEIP 156 (397)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~----~~~~l~~l~~L~~L~ls~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~p 156 (397)
+++.|++++ +.+++. ++..+..+++|++|++++|.+.+.. ...+..+.++++|++|++++| .+.+ ++
T Consensus 165 ~L~~L~L~~------~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~-l~ 236 (592)
T 3ogk_B 165 KIKTLLMEE------SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILE-LV 236 (592)
T ss_dssp TCSEEECTT------CEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGG-GH
T ss_pred CCCEEECcc------ccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHH-HH
Confidence 566777765 344333 3334456677777777766654110 011223456667777777766 4433 44
Q ss_pred hhhcCCCCCCEEEcccccC--------------------------CCCCchhhcCCCCCCEEeeecCCCCCccC-hhccC
Q 037919 157 SSLAEIADLRVLSLSQNNL--------------------------QGNIPKELGRLVNLEQLDLSYNNLSGEIP-DEIGG 209 (397)
Q Consensus 157 ~~l~~l~~L~~L~L~~n~l--------------------------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~ 209 (397)
..+..+++|++|+++.... .+.+|..+..+++|++|++++|.+++... ..+..
T Consensus 237 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence 4555555555555543111 11233344445555556665555443222 22345
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCccCceeeccC-----------CcCCCC-CccccCCCCCCcEEEcccCCCCCCCcc
Q 037919 210 MISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGS-----------NKLVGS-IPPAIGKLSRLVLLDLSQNCINGPIPE 277 (397)
Q Consensus 210 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~ 277 (397)
+++|++|+++++...+.++..+..+++|++|++++ +.+++. ++.....+++|++|+++.|.+++..+.
T Consensus 317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~ 396 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence 55555555542111111122223445555555552 222221 111122355566666555555544333
Q ss_pred cCCC-CCCCCeeecc----CCcCCCC-----CccccCCCCCCCEEEccccc--CCcCChhhcc-CCCCCCEEeCCCCcCC
Q 037919 278 TLSG-LQQLQYLIVY----HNPINSR-----IPLFLGTLQNLTSISVSECG--LTGPIPNFFS-SLNTLTALSLDNNNLS 344 (397)
Q Consensus 278 ~l~~-l~~L~~L~L~----~n~l~~~-----~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~-~~~~L~~L~Ls~n~l~ 344 (397)
.+.. +++|++|+++ .|.+++. ++..+..+++|++|++++|. +++..+..+. .+++|++|++++|.++
T Consensus 397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476 (592)
T ss_dssp HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS
T ss_pred HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC
Confidence 3333 5556666664 3344432 12223345555555554332 4433333332 2455566666655555
Q ss_pred c-CCCccccCCCcCCCCEEEccCCcCccccCCC-hHHHhhccceEeccCCc
Q 037919 345 G-TVPPSLGSLPNSMLDQLNLSHNQLSGELQFP-EEFIERLGERLDVRGND 393 (397)
Q Consensus 345 ~-~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~-~~~~~~l~~~l~l~~N~ 393 (397)
+ .++..+..+++ |++|++++|++++..... ...++.+ ++|++++|+
T Consensus 477 ~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~ls~n~ 524 (592)
T 3ogk_B 477 DEGLMEFSRGCPN--LQKLEMRGCCFSERAIAAAVTKLPSL-RYLWVQGYR 524 (592)
T ss_dssp HHHHHHHHTCCTT--CCEEEEESCCCBHHHHHHHHHHCSSC-CEEEEESCB
T ss_pred HHHHHHHHhcCcc--cCeeeccCCCCcHHHHHHHHHhcCcc-CeeECcCCc
Confidence 4 22333344555 566666665554332211 1222333 555555554
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=8.4e-21 Score=188.31 Aligned_cols=186 Identities=24% Similarity=0.325 Sum_probs=116.9
Q ss_pred CCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCC
Q 037919 111 PYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLE 190 (397)
Q Consensus 111 ~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 190 (397)
.+|+.|++++|.+. .+|..+ +++|++|++++| .++ .+| ..+++|++|++++|.+++ +|. +.. +|+
T Consensus 59 ~~L~~L~Ls~n~L~---~lp~~l---~~~L~~L~Ls~N-~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~ 123 (571)
T 3cvr_A 59 NQFSELQLNRLNLS---SLPDNL---PPQITVLEITQN-ALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLK 123 (571)
T ss_dssp TTCSEEECCSSCCS---CCCSCC---CTTCSEEECCSS-CCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCC
T ss_pred CCccEEEeCCCCCC---ccCHhH---cCCCCEEECcCC-CCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCC
Confidence 37888888888876 355543 367888888888 666 455 456778888888887775 555 544 777
Q ss_pred EEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCC
Q 037919 191 QLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNC 270 (397)
Q Consensus 191 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 270 (397)
+|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.
T Consensus 124 ~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp EEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred EEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence 77777777775 554 56777777777777764 444 45667777777777665 454 43 667777777776
Q ss_pred CCCCCcccCCCCCCC-------CeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhcc
Q 037919 271 INGPIPETLSGLQQL-------QYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFS 328 (397)
Q Consensus 271 l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 328 (397)
++ .+|. +.. +| +.|++++|.++. +|..+..+++|+.|+|++|.+++.+|..+.
T Consensus 192 L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 192 LE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred CC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 66 4444 332 44 555555555543 344444455555555555555555554443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.9e-20 Score=176.00 Aligned_cols=229 Identities=18% Similarity=0.124 Sum_probs=166.6
Q ss_pred cccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCc-hhhcCCCCCCE-EEcccccCCCCC
Q 037919 102 NISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIP-SSLAEIADLRV-LSLSQNNLQGNI 179 (397)
Q Consensus 102 ~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p-~~l~~l~~L~~-L~L~~n~l~~~~ 179 (397)
.+|..+ .+++++|+|++|.+. .++++.|.++++|++|+|++| .+.+.+| ..|.+++++++ +.+.+|++....
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCS---EECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred ccCcCc--CCCCCEEEccCCcCC---CcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 455544 367999999999887 788888899999999999999 6655554 46788888776 556678888666
Q ss_pred chhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccC-CCCCCCCCccccCCc-cCceeeccCCcCCCCCccccCC
Q 037919 180 PKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSW-NGLQGQVPPSLGTLQ-LLQKIDLGSNKLVGSIPPAIGK 257 (397)
Q Consensus 180 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~ 257 (397)
|..|..+++|++|++++|++....+..+....++..+++.+ +.+....+..+..+. .++.|++++|.++. ++.....
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~ 175 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFN 175 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSST
T ss_pred chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhcc
Confidence 77888899999999999998866555666677788888866 445543444555554 58888999998874 4444445
Q ss_pred CCCCcEEEccc-CCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEE
Q 037919 258 LSRLVLLDLSQ-NCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTAL 336 (397)
Q Consensus 258 l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 336 (397)
..+|+.+++.+ |.++...+..+..+++|++|++++|+++...+..+ .+|+.|.+.++.--..+|. +..+++|+.+
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l 251 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-LEKLVALMEA 251 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-TTTCCSCCEE
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC-chhCcChhhC
Confidence 67888888875 55553333567888899999999998877555443 4566666655543336664 6788889998
Q ss_pred eCCCC
Q 037919 337 SLDNN 341 (397)
Q Consensus 337 ~Ls~n 341 (397)
+++++
T Consensus 252 ~l~~~ 256 (350)
T 4ay9_X 252 SLTYP 256 (350)
T ss_dssp ECSCH
T ss_pred cCCCC
Confidence 88765
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.5e-20 Score=176.85 Aligned_cols=239 Identities=18% Similarity=0.171 Sum_probs=174.0
Q ss_pred CccceEcCCCC--C--CCCcccEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCC
Q 037919 65 PWPGVECEIGE--D--DPSIFHVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSL 140 (397)
Q Consensus 65 ~w~gv~C~~~~--~--~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L 140 (397)
.|..|.|.... . ..-..+++.|++++ +.++...+.+|.++++|++|+|++|.+.+ .++..+|.++++|
T Consensus 10 ~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~--~i~~~~f~~L~~l 81 (350)
T 4ay9_X 10 SNRVFLCQESKVTEIPSDLPRNAIELRFVL------TKLRVIQKGAFSGFGDLEKIEISQNDVLE--VIEADVFSNLPKL 81 (350)
T ss_dssp ETTEEEEESTTCCSCCTTCCTTCSEEEEES------CCCSEECTTSSTTCTTCCEEEEECCTTCC--EECTTSBCSCTTC
T ss_pred eCCEEEecCCCCCccCcCcCCCCCEEEccC------CcCCCcCHHHHcCCCCCCEEECcCCCCCC--ccChhHhhcchhh
Confidence 48889996431 1 11124688888886 56665555678999999999999998765 5777888999988
Q ss_pred CEE-eCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeec-CCCCCccChhccCCC-CCCEEE
Q 037919 141 EHL-ALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSY-NNLSGEIPDEIGGMI-SLTVLD 217 (397)
Q Consensus 141 ~~L-~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~ 217 (397)
+++ .+..| .+....|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+. .++.|+
T Consensus 82 ~~~l~~~~N-~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 82 HEIRIEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp CEEEEEEET-TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred hhhhcccCC-cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence 764 45556 78888888899999999999999999866666666777888888876 456544444566654 688999
Q ss_pred ccCCCCCCCCCccccCCccCceeeccC-CcCCCCCc-cccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcC
Q 037919 218 LSWNGLQGQVPPSLGTLQLLQKIDLGS-NKLVGSIP-PAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPI 295 (397)
Q Consensus 218 l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 295 (397)
+++|+++ .++.......+|++|++.+ |.++ .+| ..|..+++|++|++++|+++...+..+ .+|++|.+.++.-
T Consensus 161 L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 161 LNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYN 235 (350)
T ss_dssp CCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTT
T ss_pred ccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCC
Confidence 9999998 4555555667899999975 5555 555 567889999999999999985433344 4555555554443
Q ss_pred CCCCccccCCCCCCCEEEccccc
Q 037919 296 NSRIPLFLGTLQNLTSISVSECG 318 (397)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~L~~n~ 318 (397)
-..+| .+..+++|+.+++.++.
T Consensus 236 l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 236 LKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCCCC-CTTTCCSCCEEECSCHH
T ss_pred cCcCC-CchhCcChhhCcCCCCc
Confidence 34455 36788999999987653
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=2.5e-23 Score=209.26 Aligned_cols=300 Identities=19% Similarity=0.187 Sum_probs=181.7
Q ss_pred cEEEEEcCCCCCCCCcc-cc-ccccccccCCCCCCEEEcCCCCCCCCCc-cChhhhCCCCCCCEEeCcCCCCCc----cc
Q 037919 82 HVTKVHIGPDIITPTCK-IS-ANISDALLKLPYLKTLSIFNCFVSSPVT-LSPTLFGALSSLEHLALYSNPTLS----GE 154 (397)
Q Consensus 82 ~v~~l~l~~~~~~~~~~-~~-~~~~~~l~~l~~L~~L~ls~~~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~l~----~~ 154 (397)
+++.|++.+ +. +. ..++.....+++|++|++++|.+.+... .....+..+++|++|++++| .++ +.
T Consensus 139 ~L~~L~L~~------~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~ 211 (592)
T 3ogk_B 139 DLETLKLDK------CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKD 211 (592)
T ss_dssp GCCEEEEES------CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHH
T ss_pred cCcEEECcC------CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHH
Confidence 488899876 22 11 1233344589999999999998764211 02234578999999999999 665 34
Q ss_pred CchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCC---CccChhccCCCCCCEEEccCCCCCCCCCccc
Q 037919 155 IPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLS---GEIPDEIGGMISLTVLDLSWNGLQGQVPPSL 231 (397)
Q Consensus 155 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 231 (397)
++..+.++++|++|++++|.+.+ ++..+..+++|++|+++..... +..+..+..+++|+.|+++++. ...+|..+
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~ 289 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILF 289 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGG
T ss_pred HHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHH
Confidence 56667789999999999999874 6778888899999999753322 1222334455555555555432 22344444
Q ss_pred cCCccCceeeccCCcCCCCCc-cccCC------------------------CCCCcEEEccc-----------CCCCCC-
Q 037919 232 GTLQLLQKIDLGSNKLVGSIP-PAIGK------------------------LSRLVLLDLSQ-----------NCINGP- 274 (397)
Q Consensus 232 ~~l~~L~~L~l~~n~l~~~~~-~~l~~------------------------l~~L~~L~l~~-----------n~l~~~- 274 (397)
..+++|++|++++|.+++... ..+.. +++|++|++++ +.+++.
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 555555555555555432211 11233 44555555552 233321
Q ss_pred CcccCCCCCCCCeeeccCCcCCCCCccccCC-CCCCCEEEcc----cccCCcC-----ChhhccCCCCCCEEeCCCC--c
Q 037919 275 IPETLSGLQQLQYLIVYHNPINSRIPLFLGT-LQNLTSISVS----ECGLTGP-----IPNFFSSLNTLTALSLDNN--N 342 (397)
Q Consensus 275 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~L~----~n~l~~~-----~~~~~~~~~~L~~L~Ls~n--~ 342 (397)
++.....+++|++|+++.+.+++..+..+.. +++|++|+++ .|.+++. ++..+..+++|++|++++| .
T Consensus 370 ~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~ 449 (592)
T 3ogk_B 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449 (592)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG
T ss_pred HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC
Confidence 1122234566666666666665544444443 6677777775 4556542 3344556777777777643 3
Q ss_pred CCcCCCcccc-CCCcCCCCEEEccCCcCccc-cCCChHHHhhccceEeccCCc
Q 037919 343 LSGTVPPSLG-SLPNSMLDQLNLSHNQLSGE-LQFPEEFIERLGERLDVRGND 393 (397)
Q Consensus 343 l~~~~p~~~~-~l~~~~L~~L~l~~N~l~g~-~p~~~~~~~~l~~~l~l~~N~ 393 (397)
+++..+..+. .+++ |+.|++++|++++. ++.....++++ ++|++++|+
T Consensus 450 l~~~~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~L-~~L~l~~n~ 499 (592)
T 3ogk_B 450 LTDLGLSYIGQYSPN--VRWMLLGYVGESDEGLMEFSRGCPNL-QKLEMRGCC 499 (592)
T ss_dssp CCHHHHHHHHHSCTT--CCEEEECSCCSSHHHHHHHHTCCTTC-CEEEEESCC
T ss_pred ccHHHHHHHHHhCcc--ceEeeccCCCCCHHHHHHHHhcCccc-CeeeccCCC
Confidence 5554444443 3777 99999999988763 22222223456 889999987
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=1.3e-20 Score=177.87 Aligned_cols=152 Identities=25% Similarity=0.244 Sum_probs=70.9
Q ss_pred CEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCcccc-CCccCceeeccCCcCCCCCccccCCCCCCcEEEccc
Q 037919 190 EQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLG-TLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQ 268 (397)
Q Consensus 190 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (397)
+.++++++.+. .+|..+. +.++.|++++|++++..+..+. .+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 35566666555 3444322 2355555555555544444443 455555555555555444444444555555555555
Q ss_pred CCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhc---cCCCCCCEEeCCCCcCC
Q 037919 269 NCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFF---SSLNTLTALSLDNNNLS 344 (397)
Q Consensus 269 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~Ls~n~l~ 344 (397)
|++++..+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..+..+ ..+++|+.|+|++|+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 55544333344444444455544444444444444444444444444444443222222 23444444444444444
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=3.2e-20 Score=162.78 Aligned_cols=156 Identities=24% Similarity=0.367 Sum_probs=135.6
Q ss_pred CEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCC
Q 037919 214 TVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHN 293 (397)
Q Consensus 214 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 293 (397)
+.++.+++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57888888887 5666543 68999999999998777778889999999999999999877888999999999999999
Q ss_pred cCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCcccc
Q 037919 294 PINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGEL 373 (397)
Q Consensus 294 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~ 373 (397)
.++...+..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++ |+.|++++|++...-
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA--IQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT--CCEEECCSSCEECSG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC--CCEEEeCCCCcCCCC
Confidence 998877777888999999999999999888888999999999999999999877777888988 999999999987654
Q ss_pred C
Q 037919 374 Q 374 (397)
Q Consensus 374 p 374 (397)
.
T Consensus 169 ~ 169 (220)
T 2v9t_B 169 H 169 (220)
T ss_dssp G
T ss_pred c
Confidence 3
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=161.58 Aligned_cols=158 Identities=20% Similarity=0.271 Sum_probs=140.3
Q ss_pred CCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCc-cccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeecc
Q 037919 213 LTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIP-PAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVY 291 (397)
Q Consensus 213 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 291 (397)
-+.+++++|.++ .+|..+. +.+++|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 358999999988 4676553 457899999999987654 457899999999999999998777789999999999999
Q ss_pred CCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCcc
Q 037919 292 HNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG 371 (397)
Q Consensus 292 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g 371 (397)
+|.+++..+..+..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..+..+++ |+.|++++|++++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS--LSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTT--CCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCC--CCEEEecCcCCcC
Confidence 99999988888999999999999999999888999999999999999999999888999999999 9999999999998
Q ss_pred ccCC
Q 037919 372 ELQF 375 (397)
Q Consensus 372 ~~p~ 375 (397)
..+.
T Consensus 168 ~c~l 171 (220)
T 2v70_A 168 NCYL 171 (220)
T ss_dssp SGGG
T ss_pred CCch
Confidence 7764
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=8.1e-20 Score=167.22 Aligned_cols=173 Identities=25% Similarity=0.357 Sum_probs=127.9
Q ss_pred hCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCC
Q 037919 134 FGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISL 213 (397)
Q Consensus 134 ~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 213 (397)
+..+++|++|++++| .+... +.+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+ ++ .+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~--~~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSV--QGIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred hhhcCcccEEEccCC-CcccC--hhHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence 356778888888888 55543 3477788888888888888754 33 7788888888888888874 33 37788888
Q ss_pred CEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCC
Q 037919 214 TVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHN 293 (397)
Q Consensus 214 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 293 (397)
++|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 8888888887753 4577788888888888887754 467777888888888888775443 777778888888888
Q ss_pred cCCCCCccccCCCCCCCEEEcccccCCc
Q 037919 294 PINSRIPLFLGTLQNLTSISVSECGLTG 321 (397)
Q Consensus 294 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 321 (397)
.+++. + .+..+++|+.|++++|+++.
T Consensus 189 ~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 77663 3 36777788888888877764
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=2.1e-19 Score=158.54 Aligned_cols=157 Identities=24% Similarity=0.214 Sum_probs=138.2
Q ss_pred CCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeecc
Q 037919 212 SLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVY 291 (397)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 291 (397)
..+.++.+++++. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|+++...+..+..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3567888888877 5666543 889999999999998888889999999999999999986666778899999999999
Q ss_pred CCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCcc
Q 037919 292 HNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG 371 (397)
Q Consensus 292 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g 371 (397)
+|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++ |+.|++++|++.+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS--LTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT--CCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCC--CCEEEeeCCCccC
Confidence 99999887778889999999999999998 78888899999999999999999766677889999 9999999999988
Q ss_pred ccC
Q 037919 372 ELQ 374 (397)
Q Consensus 372 ~~p 374 (397)
..+
T Consensus 174 ~c~ 176 (229)
T 3e6j_A 174 ECR 176 (229)
T ss_dssp TBG
T ss_pred Ccc
Confidence 765
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=2.7e-19 Score=156.88 Aligned_cols=154 Identities=26% Similarity=0.301 Sum_probs=138.0
Q ss_pred CEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccC
Q 037919 190 EQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQN 269 (397)
Q Consensus 190 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 269 (397)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57888888887 5676543 68999999999999777778999999999999999999888899999999999999999
Q ss_pred CCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcC
Q 037919 270 CINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGT 346 (397)
Q Consensus 270 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 346 (397)
.++...+..+..+++|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 99966666688999999999999999998889999999999999999999988888899999999999999999753
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.1e-19 Score=157.61 Aligned_cols=157 Identities=22% Similarity=0.228 Sum_probs=140.5
Q ss_pred CCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCC-ccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcc
Q 037919 189 LEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVP-PSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLS 267 (397)
Q Consensus 189 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 267 (397)
-+.+++++|.++ .+|..+ .+.+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 358999999998 567654 3467899999999997644 458899999999999999998777789999999999999
Q ss_pred cCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCC
Q 037919 268 QNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTV 347 (397)
Q Consensus 268 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 347 (397)
+|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+|++|++++..|..|..+++|++|++++|.+.+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99999888888999999999999999999988999999999999999999999888999999999999999999998754
Q ss_pred C
Q 037919 348 P 348 (397)
Q Consensus 348 p 348 (397)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 4
No 106
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=2.9e-22 Score=201.49 Aligned_cols=133 Identities=11% Similarity=0.093 Sum_probs=77.2
Q ss_pred CCCCcEEEcccCCCCCCCcccCC-CCCCCCeeecc--C----CcCCCC-----CccccCCCCCCCEEEcccccCCcCChh
Q 037919 258 LSRLVLLDLSQNCINGPIPETLS-GLQQLQYLIVY--H----NPINSR-----IPLFLGTLQNLTSISVSECGLTGPIPN 325 (397)
Q Consensus 258 l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~-----~~~~~~~~~~L~~L~L~~n~l~~~~~~ 325 (397)
+++|+.|.+..|.+++.....+. .+++|++|+++ + +.+++. ++..+..+++|++|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 45666666555555543333332 46677777777 3 334421 111244566777777765 55554444
Q ss_pred hccC-CCCCCEEeCCCCcCCcCCCccc-cCCCcCCCCEEEccCCcCccccCC-ChHHHhhccceEeccCCcC
Q 037919 326 FFSS-LNTLTALSLDNNNLSGTVPPSL-GSLPNSMLDQLNLSHNQLSGELQF-PEEFIERLGERLDVRGNDK 394 (397)
Q Consensus 326 ~~~~-~~~L~~L~Ls~n~l~~~~p~~~-~~l~~~~L~~L~l~~N~l~g~~p~-~~~~~~~l~~~l~l~~N~~ 394 (397)
.+.. +++|++|++++|.+++..+..+ ..+++ |++|++++|++++..+. ....++.+ ++|++++|+.
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~--L~~L~L~~n~~~~~~~~~~~~~l~~L-~~L~l~~~~~ 518 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS--LRKLEIRDCPFGDKALLANASKLETM-RSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT--CCEEEEESCSCCHHHHHHTGGGGGGS-SEEEEESSCC
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCC--cCEEECcCCCCcHHHHHHHHHhCCCC-CEEeeeCCCC
Confidence 4443 6778888888877765544444 55677 88888888877544332 12224555 7778877764
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.3e-19 Score=165.94 Aligned_cols=175 Identities=25% Similarity=0.341 Sum_probs=141.3
Q ss_pred ccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCC
Q 037919 107 LLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRL 186 (397)
Q Consensus 107 l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 186 (397)
+..+++|++|++++|.+.. ++. +..+++|++|++++| .+.+..+ +.++++|++|++++|.+.+ + ..+..+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~---~~~--~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l 111 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS---VQG--IQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDL 111 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC---CTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTC
T ss_pred hhhcCcccEEEccCCCccc---Chh--HhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccC
Confidence 4567889999999888763 332 678899999999998 7776544 8889999999999998874 3 348888
Q ss_pred CCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEc
Q 037919 187 VNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDL 266 (397)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 266 (397)
++|++|++++|.+.+. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|+.|++
T Consensus 112 ~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 9999999999998853 4578889999999999988854 578888999999999998886543 888899999999
Q ss_pred ccCCCCCCCcccCCCCCCCCeeeccCCcCCCCC
Q 037919 267 SQNCINGPIPETLSGLQQLQYLIVYHNPINSRI 299 (397)
Q Consensus 267 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 299 (397)
++|.+++ ++ .+..+++|+.|++++|+++...
T Consensus 186 ~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 186 SKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 9998885 44 4788899999999999886643
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.9e-19 Score=180.39 Aligned_cols=172 Identities=26% Similarity=0.349 Sum_probs=92.0
Q ss_pred cCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCC
Q 037919 108 LKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLV 187 (397)
Q Consensus 108 ~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 187 (397)
..+++|+.|++++|.+.. ++ .+..+++|++|+|++| .+.+..+ +..+++|++|+|++|.+.+ ++ .+..++
T Consensus 40 ~~L~~L~~L~l~~n~i~~---l~--~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~ 109 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS---VQ--GIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLK 109 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC---CT--TGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCT
T ss_pred hcCCCCCEEECcCCCCCC---Ch--HHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCC
Confidence 455566666666665542 22 1455666666666666 4554333 5556666666666665543 22 455555
Q ss_pred CCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcc
Q 037919 188 NLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLS 267 (397)
Q Consensus 188 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 267 (397)
+|++|+|++|.+.+ + ..+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|+.|+++
T Consensus 110 ~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 110 KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183 (605)
T ss_dssp TCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence 66666666665553 2 2355555566666655555533 345555555555555555554333 5555555555555
Q ss_pred cCCCCCCCcccCCCCCCCCeeeccCCcCCC
Q 037919 268 QNCINGPIPETLSGLQQLQYLIVYHNPINS 297 (397)
Q Consensus 268 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 297 (397)
+|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 184 ~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 184 KNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5555532 234555555555555555544
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.2e-19 Score=181.92 Aligned_cols=190 Identities=24% Similarity=0.317 Sum_probs=138.8
Q ss_pred CCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEE
Q 037919 113 LKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQL 192 (397)
Q Consensus 113 L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 192 (397)
+..+.+..+.+.+ +.. +..+++|++|++++| .+... + .+..+++|++|+|++|.+.+..+ +..+++|+.|
T Consensus 23 l~~l~l~~~~i~~---~~~--~~~L~~L~~L~l~~n-~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 23 TIKDNLKKKSVTD---AVT--QNELNSIDQIIANNS-DIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHTTCSCTTS---EEC--HHHHTTCCCCBCTTC-CCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHhccCCCccc---ccc--hhcCCCCCEEECcCC-CCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 3444555555442 111 456788888888888 55543 3 57888888888888888875433 7788888888
Q ss_pred eeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCC
Q 037919 193 DLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCIN 272 (397)
Q Consensus 193 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 272 (397)
+|++|.+.+ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 888888874 33 578888888888888888752 4577888888888888888754 56777888888888888887
Q ss_pred CCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcC
Q 037919 273 GPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGP 322 (397)
Q Consensus 273 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 322 (397)
+..| +..+++|++|+|++|.+++. ..+..+++|+.|+|++|.+++.
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 6554 77788888888888887764 3467778888888888877654
No 110
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=2.7e-22 Score=201.77 Aligned_cols=300 Identities=14% Similarity=0.130 Sum_probs=154.6
Q ss_pred cEEEEEcCCCCCCCCcccccccccccc-CCCCCCEEEcCCC-CCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhh
Q 037919 82 HVTKVHIGPDIITPTCKISANISDALL-KLPYLKTLSIFNC-FVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSL 159 (397)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~ls~~-~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l 159 (397)
+++.|++++ +.+++..+..+. .+++|++|++++| .++. ...+..+.++++|++|++++| .+++..+..+
T Consensus 106 ~L~~L~L~~------~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~--~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~l 176 (594)
T 2p1m_B 106 WLEEIRLKR------MVVTDDCLELIAKSFKNFKVLVLSSCEGFST--DGLAAIAATCRNLKELDLRES-DVDDVSGHWL 176 (594)
T ss_dssp TCCEEEEES------CBCCHHHHHHHHHHCTTCCEEEEESCEEEEH--HHHHHHHHHCTTCCEEECTTC-EEECCCGGGG
T ss_pred CCCeEEeeC------cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH--HHHHHHHHhCCCCCEEeCcCC-ccCCcchHHH
Confidence 566666665 344444444443 5667777777666 3321 112233346677777777766 4444333333
Q ss_pred ----cCCCCCCEEEccccc--CCCC-CchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCC----------
Q 037919 160 ----AEIADLRVLSLSQNN--LQGN-IPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNG---------- 222 (397)
Q Consensus 160 ----~~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~---------- 222 (397)
..+++|++|++++|. +... ++..+.++++|++|++++|...+.++..+..+++|++|+++.+.
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 256 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH
Confidence 245567777776665 1110 11112345666666666652211233333444444444432221
Q ss_pred ----------------CCC----CCCccccCCccCceeeccCCcCCCCCc-cccCCCCCCcEEEcccC------------
Q 037919 223 ----------------LQG----QVPPSLGTLQLLQKIDLGSNKLVGSIP-PAIGKLSRLVLLDLSQN------------ 269 (397)
Q Consensus 223 ----------------l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n------------ 269 (397)
+.. .++..+..+++|++|++++|.+++... ..+..+++|++|++++|
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~ 336 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHh
Confidence 000 111122234556666666555432211 11334455555555444
Q ss_pred ---------------------CCCCCCcccC-CCCCCCCeeeccCCcCCCCCccccC-CCCCCCEEEcc--c----ccCC
Q 037919 270 ---------------------CINGPIPETL-SGLQQLQYLIVYHNPINSRIPLFLG-TLQNLTSISVS--E----CGLT 320 (397)
Q Consensus 270 ---------------------~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~L~--~----n~l~ 320 (397)
.+++.....+ ..+++|++|.+..+.+++.....+. .+++|++|+++ + +.++
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 2221111111 1245566665555555543333332 46778888887 3 4454
Q ss_pred c-----CChhhccCCCCCCEEeCCCCcCCcCCCccccC-CCcCCCCEEEccCCcCccccCCCh-HHHhhccceEeccCCc
Q 037919 321 G-----PIPNFFSSLNTLTALSLDNNNLSGTVPPSLGS-LPNSMLDQLNLSHNQLSGELQFPE-EFIERLGERLDVRGND 393 (397)
Q Consensus 321 ~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~~~L~~L~l~~N~l~g~~p~~~-~~~~~l~~~l~l~~N~ 393 (397)
+ .++..+..+++|+.|++++ .+++..+..+.. +++ |+.|++++|.+++..+..+ ..++.+ ++|++++|+
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~--L~~L~L~~~~i~~~~~~~l~~~~~~L-~~L~L~~n~ 492 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK--MEMLSVAFAGDSDLGMHHVLSGCDSL-RKLEIRDCP 492 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT--CCEEEEESCCSSHHHHHHHHHHCTTC-CEEEEESCS
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh--ccEeeccCCCCcHHHHHHHHhcCCCc-CEEECcCCC
Confidence 2 1223356677888888877 666555555554 777 9999999999876655433 334566 899999987
Q ss_pred C
Q 037919 394 K 394 (397)
Q Consensus 394 ~ 394 (397)
.
T Consensus 493 ~ 493 (594)
T 2p1m_B 493 F 493 (594)
T ss_dssp C
T ss_pred C
Confidence 5
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.8e-19 Score=170.05 Aligned_cols=177 Identities=28% Similarity=0.222 Sum_probs=147.1
Q ss_pred CEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhcc-CCCCCCEEEccCCCCCCCCCccccCCccCceeeccC
Q 037919 166 RVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIG-GMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGS 244 (397)
Q Consensus 166 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 244 (397)
+.++++++.++ .+|..+. +.++.|+|++|++++..+..+. ++++|++|++++|++++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57889998887 5676553 4688999999999877677676 899999999999999877777889999999999999
Q ss_pred CcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCcccc---CCCCCCCEEEcccccCCc
Q 037919 245 NKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFL---GTLQNLTSISVSECGLTG 321 (397)
Q Consensus 245 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~ 321 (397)
|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|+|++|.+++..+..+ ..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99987767778889999999999999987778889999999999999999988666555 568999999999999986
Q ss_pred CChhhccCCCC--CCEEeCCCCcCCc
Q 037919 322 PIPNFFSSLNT--LTALSLDNNNLSG 345 (397)
Q Consensus 322 ~~~~~~~~~~~--L~~L~Ls~n~l~~ 345 (397)
..+..+..++. ++.|+|++|.+..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 66667777776 4889999998874
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1e-18 Score=154.13 Aligned_cols=157 Identities=22% Similarity=0.252 Sum_probs=137.6
Q ss_pred CCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcc
Q 037919 188 NLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLS 267 (397)
Q Consensus 188 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 267 (397)
..+.++.+++.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+....+..|..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3567889888887 6676443 899999999999998888899999999999999999986666778899999999999
Q ss_pred cCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCC
Q 037919 268 QNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTV 347 (397)
Q Consensus 268 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 347 (397)
+|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99999777777899999999999999998 46777889999999999999999777778899999999999999998765
Q ss_pred C
Q 037919 348 P 348 (397)
Q Consensus 348 p 348 (397)
+
T Consensus 176 ~ 176 (229)
T 3e6j_A 176 R 176 (229)
T ss_dssp G
T ss_pred c
Confidence 4
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=8.9e-19 Score=150.83 Aligned_cols=153 Identities=22% Similarity=0.275 Sum_probs=84.3
Q ss_pred CCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEE
Q 037919 185 RLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLL 264 (397)
Q Consensus 185 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 264 (397)
.+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--------------------------~~~~l~~l~~L~~L 93 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--------------------------NYNPISGLSNLERL 93 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--------------------------CCGGGTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--------------------------cchhhhcCCCCCEE
Confidence 3455555555555555 333 3455555555555555332 11234445555555
Q ss_pred EcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEccccc-CCcCChhhccCCCCCCEEeCCCCcC
Q 037919 265 DLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECG-LTGPIPNFFSSLNTLTALSLDNNNL 343 (397)
Q Consensus 265 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~Ls~n~l 343 (397)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+ ++ .+| .+..+++|++|++++|.+
T Consensus 94 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred EeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC
Confidence 555555554445555555666666666666655555555666666666666665 43 444 456666777777777766
Q ss_pred CcCCCccccCCCcCCCCEEEccCCcCcc
Q 037919 344 SGTVPPSLGSLPNSMLDQLNLSHNQLSG 371 (397)
Q Consensus 344 ~~~~p~~~~~l~~~~L~~L~l~~N~l~g 371 (397)
++ ++ .+..+++ |+.|++++|++.+
T Consensus 172 ~~-~~-~l~~l~~--L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 172 HD-YR-GIEDFPK--LNQLYAFSQTIGG 195 (197)
T ss_dssp CC-CT-TGGGCSS--CCEEEECBC----
T ss_pred cC-hH-HhccCCC--CCEEEeeCcccCC
Confidence 64 33 5566666 7777777776653
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=5.9e-20 Score=188.33 Aligned_cols=218 Identities=20% Similarity=0.197 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCCCCCCCCCCCCCCCccceEcCCCCCCCCcccEEEEEcCCCCCCCCcccccccccc
Q 037919 32 MDEDELLGLFEVMSSL-----IEDPGWGRAHPEPCTETPWPGVECEIGEDDPSIFHVTKVHIGPDIITPTCKISANISDA 106 (397)
Q Consensus 32 ~~~~~~~~l~~~~~~~-----~~~~~w~~~~~~~c~~~~w~gv~C~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~ 106 (397)
....+++++.+++... .....|.......+ .|.++++... +++++++.+ +.+.. .+..
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~-------~~~~l~L~~------n~~~~-~~~~ 191 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSG---TATNSAVSTP-------LTPKIELFA------NGKDE-ANQA 191 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccc---cCCCceecCC-------ccceEEeeC------CCCCc-chhh
Confidence 3445567777776543 22234543322233 4888877643 788888865 22222 2333
Q ss_pred ccCCCCCCEEEcCCCCCCCC------CccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCc
Q 037919 107 LLKLPYLKTLSIFNCFVSSP------VTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIP 180 (397)
Q Consensus 107 l~~l~~L~~L~ls~~~~~~~------~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 180 (397)
+ |+.++|+.+.+.+. ..++++.|..++.|+.|+|++| .+. .+|..+.++++|++|+|++|.++ .+|
T Consensus 192 ~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp 263 (727)
T 4b8c_D 192 L-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIF-NISANIFKYDFLTRLYLNGNSLT-ELP 263 (727)
T ss_dssp -----------------------------------CCCCCCEEECTTS-CCS-CCCGGGGGCCSCSCCBCTTSCCS-CCC
T ss_pred H-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCC-CCChhhcCCCCCCEEEeeCCcCc-ccC
Confidence 3 33334443333210 0233444555555555555555 343 34444455555555555555555 455
Q ss_pred hhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCC
Q 037919 181 KELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSR 260 (397)
Q Consensus 181 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 260 (397)
..+.++++|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..|+.+++|++|++++|.+++.+|..+..+..
T Consensus 264 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 341 (727)
T 4b8c_D 264 AEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV 341 (727)
T ss_dssp GGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH
T ss_pred hhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch
Confidence 55555555555555555555 44555555555555555555554 44444555555555555555555544444332211
Q ss_pred -CcEEEcccCCCCCCCc
Q 037919 261 -LVLLDLSQNCINGPIP 276 (397)
Q Consensus 261 -L~~L~l~~n~l~~~~~ 276 (397)
+..+++++|.+++.+|
T Consensus 342 ~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 342 TGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp HHHHHHHHHCCCCCCCC
T ss_pred hhhHHhhccCcccCcCc
Confidence 1124445555554444
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=9.8e-19 Score=150.58 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=107.0
Q ss_pred hcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCc
Q 037919 159 LAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQ 238 (397)
Q Consensus 159 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 238 (397)
...+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 366789999999999998 566 6889999999999999775 344688899999999999988876677777777777
Q ss_pred eeeccCCcCCCCCccccCCCCCCcEEEcccCC-CCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccc
Q 037919 239 KIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNC-INGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSEC 317 (397)
Q Consensus 239 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 317 (397)
+|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++.. .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 77777777776566666667777777777766 33 333 3555555555555555554421 3344444555555444
Q ss_pred cC
Q 037919 318 GL 319 (397)
Q Consensus 318 ~l 319 (397)
++
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 44
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=2.4e-21 Score=192.94 Aligned_cols=204 Identities=19% Similarity=0.180 Sum_probs=119.5
Q ss_pred CCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEccccc-------------CCCCCchhhcCCCCCCEEe-eecCCCC
Q 037919 135 GALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNN-------------LQGNIPKELGRLVNLEQLD-LSYNNLS 200 (397)
Q Consensus 135 ~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~L~~L~-L~~n~l~ 200 (397)
..+++|+.|+|++| .+. .+|..++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n-~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHH-HHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChh-hHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45667777777777 444 567777777777777775553 3445555666666666666 4444321
Q ss_pred CccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCC
Q 037919 201 GEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLS 280 (397)
Q Consensus 201 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 280 (397)
+|+.+.+.+|.+.. ++ ...|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+.
T Consensus 424 -----------~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 -----------DLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp -----------HHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred -----------hhhhhhhhcccccc-cC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 11112222222221 00 0135556666666654 343 566666666666666666 5566666
Q ss_pred CCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCC-hhhccCCCCCCEEeCCCCcCCcCCCcc---ccCCCc
Q 037919 281 GLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPI-PNFFSSLNTLTALSLDNNNLSGTVPPS---LGSLPN 356 (397)
Q Consensus 281 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~p~~---~~~l~~ 356 (397)
.+++|+.|++++|.+++ +| .+..+++|+.|+|++|++++.. |..++.+++|+.|+|++|.+++..|.. +..+|+
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 66666666666666665 34 5666677777777777776555 666777777777777777777544321 233666
Q ss_pred CCCCEEEc
Q 037919 357 SMLDQLNL 364 (397)
Q Consensus 357 ~~L~~L~l 364 (397)
|+.|++
T Consensus 562 --L~~L~l 567 (567)
T 1dce_A 562 --VSSILT 567 (567)
T ss_dssp --CSEEEC
T ss_pred --cCccCC
Confidence 776653
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=1.3e-21 Score=194.86 Aligned_cols=203 Identities=22% Similarity=0.194 Sum_probs=148.6
Q ss_pred cCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCce
Q 037919 160 AEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQK 239 (397)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 239 (397)
..+++|+.|+|++|.+. .+|..++++++|+.|++++|......+..+ ..+...+..|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence 45677888888888876 677778888888888775553110111000 001122234444555555555
Q ss_pred ee--------------ccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCC
Q 037919 240 ID--------------LGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGT 305 (397)
Q Consensus 240 L~--------------l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 305 (397)
|+ +.+|.+.. ++ ...|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred Ccchhhcccchhhhhhhhcccccc-cC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 54 34444432 11 1258999999999996 676 899999999999999998 57889999
Q ss_pred CCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCC-CccccCCCcCCCCEEEccCCcCccccCCChHH---Hh
Q 037919 306 LQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTV-PPSLGSLPNSMLDQLNLSHNQLSGELQFPEEF---IE 381 (397)
Q Consensus 306 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~---~~ 381 (397)
+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..+..+++ |+.|++++|++++..|..... ++
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~--L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR--LVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT--CCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC--CCEEEecCCcCCCCccHHHHHHHHCc
Confidence 9999999999999996 67 7999999999999999999877 999999999 999999999999887755433 23
Q ss_pred hccceEe
Q 037919 382 RLGERLD 388 (397)
Q Consensus 382 ~l~~~l~ 388 (397)
.+ ++|+
T Consensus 561 ~L-~~L~ 566 (567)
T 1dce_A 561 SV-SSIL 566 (567)
T ss_dssp TC-SEEE
T ss_pred cc-CccC
Confidence 44 5665
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.6e-18 Score=156.10 Aligned_cols=171 Identities=19% Similarity=0.283 Sum_probs=136.7
Q ss_pred CCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCcee
Q 037919 161 EIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKI 240 (397)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 240 (397)
.+.+++.++++++.+++ ++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 34566777888888873 33 5677889999999999887 455 68889999999999999885433 8889999999
Q ss_pred eccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCC
Q 037919 241 DLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLT 320 (397)
Q Consensus 241 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 320 (397)
++++|.+++ ++. +.. ++|+.|++++|++++. ..+..+++|++|++++|++++. + .+..+++|++|++++|+++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 999999885 333 233 8899999999988853 3588889999999999998775 3 5778889999999999988
Q ss_pred cCChhhccCCCCCCEEeCCCCcCCcC
Q 037919 321 GPIPNFFSSLNTLTALSLDNNNLSGT 346 (397)
Q Consensus 321 ~~~~~~~~~~~~L~~L~Ls~n~l~~~ 346 (397)
+. ..+..+++|+.|++++|.+++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 65 6678888999999999988854
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.1e-18 Score=157.35 Aligned_cols=169 Identities=24% Similarity=0.290 Sum_probs=83.2
Q ss_pred CCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCC
Q 037919 110 LPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNL 189 (397)
Q Consensus 110 l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 189 (397)
+.+++.++++.+.+.+ ++ .+..+++|++|++++| .+.. ++ .+..+++|++|++++|.+++. +. +..+++|
T Consensus 18 l~~l~~l~l~~~~i~~---~~--~~~~l~~L~~L~l~~n-~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L 87 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD---LV--SQKELSGVQNFNGDNS-NIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHTCSCTTS---EE--CHHHHTTCSEEECTTS-CCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSC
T ss_pred HHHHHHHHhcCCCccc---cc--chhhcCcCcEEECcCC-Cccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCC
Confidence 3444555555555542 22 1445556666666665 4442 22 455555666666666655532 22 5555556
Q ss_pred CEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccC
Q 037919 190 EQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQN 269 (397)
Q Consensus 190 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 269 (397)
++|++++|++++ ++. +.. ++|++|++++|++++. +.+..+++|++|++++|.+++. + .+..+++|+.|++++|
T Consensus 88 ~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 88 EELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTS
T ss_pred CEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCC
Confidence 666665555553 222 112 5555555555555432 2344555555555555555432 2 3444555555555555
Q ss_pred CCCCCCcccCCCCCCCCeeeccCCcCCC
Q 037919 270 CINGPIPETLSGLQQLQYLIVYHNPINS 297 (397)
Q Consensus 270 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 297 (397)
.+++. ..+..+++|+.|++++|.++.
T Consensus 161 ~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 161 EITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred cCcch--HHhccCCCCCEEeCCCCcccC
Confidence 55433 334444555555555554443
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.4e-17 Score=142.68 Aligned_cols=174 Identities=21% Similarity=0.286 Sum_probs=122.8
Q ss_pred CEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCcc-ccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccC
Q 037919 214 TVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPP-AIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYH 292 (397)
Q Consensus 214 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 292 (397)
+++++++++++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888885 56665433 788888888888765553 477888888888888888877778888888888888888
Q ss_pred CcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccc
Q 037919 293 NPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGE 372 (397)
Q Consensus 293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~ 372 (397)
|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+.... ... ++...+..+.....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~--l~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEW--LRKKSLNGGAARCG 164 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHH--HHHHCCSGGGCBBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHH--HHHcCCCCCCCCCC
Confidence 888887777788888888888888888877788888888888888888888866542110 011 22223344455555
Q ss_pred cCCChHHHhhccceEeccCCcCCCC
Q 037919 373 LQFPEEFIERLGERLDVRGNDKLCT 397 (397)
Q Consensus 373 ~p~~~~~~~~l~~~l~l~~N~~~C~ 397 (397)
.|..+. .. ...++..+.+.|+
T Consensus 165 ~P~~l~---~~-~l~~l~~~~~~C~ 185 (192)
T 1w8a_A 165 APSKVR---DV-QIKDLPHSEFKCS 185 (192)
T ss_dssp SSTTTT---TS-BGGGSCTTTCCCC
T ss_pred CChHHc---CC-ChhhCcHhhcCcC
Confidence 554432 22 3456777777774
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=7.4e-19 Score=180.19 Aligned_cols=220 Identities=21% Similarity=0.224 Sum_probs=93.1
Q ss_pred CCCCEEeCcCCCCCcccCchhhcCCCCCCEEE-----cccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCC
Q 037919 138 SSLEHLALYSNPTLSGEIPSSLAEIADLRVLS-----LSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMIS 212 (397)
Q Consensus 138 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~-----L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 212 (397)
+.++.|++..| .+.. .+..+.....|+.+. ++.|.+. ..+..+..+++|+.|+|++|.+. .+|..+..+++
T Consensus 173 ~~~~~l~L~~n-~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFAN-GKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCC-CCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 56777777776 4443 233222222222222 2222222 33555666777777777777766 55655666777
Q ss_pred CCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccC
Q 037919 213 LTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYH 292 (397)
Q Consensus 213 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 292 (397)
|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+..+++|++|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 777777777776 56666777777777777777776 55666677777777777777665 5566677777777777777
Q ss_pred CcCCCCCccccCCCC-CCCEEEcccccCCcCChhhccCCCCCCEEeCCCC--------cCCcCCCccccCCCcCCCCEEE
Q 037919 293 NPINSRIPLFLGTLQ-NLTSISVSECGLTGPIPNFFSSLNTLTALSLDNN--------NLSGTVPPSLGSLPNSMLDQLN 363 (397)
Q Consensus 293 n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n--------~l~~~~p~~~~~l~~~~L~~L~ 363 (397)
|.+++.+|..+.... .+..+++++|.+++.+|. .|+.|++++| .+.+..+..+..++. +....
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~--~~~~~ 397 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAK--RTFTV 397 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------------------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccc--cceee
Confidence 777666655543321 112356666777666554 3445555555 222222333344444 45556
Q ss_pred ccCCcCccc
Q 037919 364 LSHNQLSGE 372 (397)
Q Consensus 364 l~~N~l~g~ 372 (397)
+++|-+.+.
T Consensus 398 ls~Nil~~~ 406 (727)
T 4b8c_D 398 LSYNTLCQH 406 (727)
T ss_dssp ----CCCGG
T ss_pred eeccccccc
Confidence 666665533
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.7e-17 Score=142.21 Aligned_cols=134 Identities=22% Similarity=0.269 Sum_probs=120.8
Q ss_pred CceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcc-cCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcc
Q 037919 237 LQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPE-TLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVS 315 (397)
Q Consensus 237 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 315 (397)
-++++++++.++ .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|+|+
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 378999999986 6776553 3899999999999876654 48899999999999999999889999999999999999
Q ss_pred cccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCC
Q 037919 316 ECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQF 375 (397)
Q Consensus 316 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~ 375 (397)
+|++++..+..|..+++|++|+|++|++++..|..+..+++ |++|++++|++++..+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS--LTSLNLASNPFNCNCHL 144 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT--CCEEECTTCCBCCSGGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC--CCEEEeCCCCccCcCcc
Confidence 99999888888999999999999999999999999999999 99999999999998774
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=8.7e-17 Score=134.58 Aligned_cols=132 Identities=23% Similarity=0.204 Sum_probs=67.1
Q ss_pred CCCCEEEccCCCCC-CCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeee
Q 037919 211 ISLTVLDLSWNGLQ-GQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLI 289 (397)
Q Consensus 211 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 289 (397)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34555555555544 34444445555555555555555433 3444555555555555555544444444455555555
Q ss_pred ccCCcCCCCCc-cccCCCCCCCEEEcccccCCcCCh---hhccCCCCCCEEeCCCCcCC
Q 037919 290 VYHNPINSRIP-LFLGTLQNLTSISVSECGLTGPIP---NFFSSLNTLTALSLDNNNLS 344 (397)
Q Consensus 290 L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~Ls~n~l~ 344 (397)
+++|.+++... ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555544321 344555555555555555553333 24555555555555555554
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=136.27 Aligned_cols=131 Identities=22% Similarity=0.288 Sum_probs=114.5
Q ss_pred ceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccc
Q 037919 238 QKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSEC 317 (397)
Q Consensus 238 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 317 (397)
+.++++++.++ .+|..+ .++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67889999887 566554 368999999999998 67788999999999999999999988888999999999999999
Q ss_pred cCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccC
Q 037919 318 GLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQ 374 (397)
Q Consensus 318 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p 374 (397)
++++..+..|..+++|++|+|++|.+++..+..+..+++ |+.|++++|++.+.-.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA--LSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT--CCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc--ccEEEeCCCCeecCCc
Confidence 999888888999999999999999999666667888999 9999999999986554
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=1.5e-16 Score=133.12 Aligned_cols=132 Identities=27% Similarity=0.269 Sum_probs=72.9
Q ss_pred CCCCEEeCcCCCCCc-ccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEE
Q 037919 138 SSLEHLALYSNPTLS-GEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVL 216 (397)
Q Consensus 138 ~~L~~L~l~~n~~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 216 (397)
++|++|++++| .+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45566666655 444 45555555666666666666666533 445556666666666666665455555556666666
Q ss_pred EccCCCCCCCC-CccccCCccCceeeccCCcCCCCCc---cccCCCCCCcEEEcccCCCC
Q 037919 217 DLSWNGLQGQV-PPSLGTLQLLQKIDLGSNKLVGSIP---PAIGKLSRLVLLDLSQNCIN 272 (397)
Q Consensus 217 ~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~ 272 (397)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666655321 1445555555555555555553332 24445555555555555443
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.1e-16 Score=131.12 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=58.8
Q ss_pred ccCceeeccCCcCC-CCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEE
Q 037919 235 QLLQKIDLGSNKLV-GSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSIS 313 (397)
Q Consensus 235 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 313 (397)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444444 33444444444444444444444432 3344444455555555544444444444444555555
Q ss_pred cccccCCcC-ChhhccCCCCCCEEeCCCCcCCcCCC---ccccCCCcCCCCEEEcc
Q 037919 314 VSECGLTGP-IPNFFSSLNTLTALSLDNNNLSGTVP---PSLGSLPNSMLDQLNLS 365 (397)
Q Consensus 314 L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~p---~~~~~l~~~~L~~L~l~ 365 (397)
+++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++ |+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~--L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ--LTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT--CCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC--cccccCC
Confidence 555555431 22444455555555555555554333 23444555 5555443
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=9.1e-16 Score=129.48 Aligned_cols=133 Identities=26% Similarity=0.267 Sum_probs=89.5
Q ss_pred CceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEccc
Q 037919 237 LQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSE 316 (397)
Q Consensus 237 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 316 (397)
.+.+++++++++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345566666555 233322 35677777777777655555566777777777777777766566667777777777777
Q ss_pred ccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccC
Q 037919 317 CGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQ 374 (397)
Q Consensus 317 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p 374 (397)
|++++..+..+..+++|++|++++|.+++..+..+..+++ |++|++++|++++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT--CCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcc--cCEEEecCCCeeccCc
Confidence 7777666666677777777777777777555545566777 7778888887777655
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=3.4e-17 Score=152.42 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=51.8
Q ss_pred CCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCC-EEEcccccCCcCChhhccCCCCCCEE
Q 037919 258 LSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLT-SISVSECGLTGPIPNFFSSLNTLTAL 336 (397)
Q Consensus 258 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L 336 (397)
+++|+.+++++|+++...+.+|.++++|+++++.+| ++...+..|.++++|+ .+++.+ +++...+..|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 445555555555555333344555555555555554 4444444555555555 555554 4443444455555555555
Q ss_pred eCCCCcCCcCCCccccCCCcCCCCEEE
Q 037919 337 SLDNNNLSGTVPPSLGSLPNSMLDQLN 363 (397)
Q Consensus 337 ~Ls~n~l~~~~p~~~~~l~~~~L~~L~ 363 (397)
++++|.++..-+..|..+++ |+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~--L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVP--SKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCC--CCEEE
T ss_pred EeCCCccCccchhhhcCCcc--hhhhc
Confidence 55555555444444555555 55543
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=1.5e-16 Score=130.26 Aligned_cols=128 Identities=23% Similarity=0.217 Sum_probs=78.4
Q ss_pred CCCCEEEccCCCCC-CCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeee
Q 037919 211 ISLTVLDLSWNGLQ-GQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLI 289 (397)
Q Consensus 211 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 289 (397)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555554 44444455555555555555555543 4455566666666666666655565555566677777
Q ss_pred ccCCcCCCC-CccccCCCCCCCEEEcccccCCcCCh---hhccCCCCCCEEeCCC
Q 037919 290 VYHNPINSR-IPLFLGTLQNLTSISVSECGLTGPIP---NFFSSLNTLTALSLDN 340 (397)
Q Consensus 290 L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~Ls~ 340 (397)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777766553 23556667777777777777775544 4667777788777763
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=6.4e-17 Score=150.57 Aligned_cols=224 Identities=13% Similarity=0.059 Sum_probs=146.9
Q ss_pred CCCCCEEEcCCCCCCC-----------------CCccChhhhCC--------CCCCCEEeCcCCCCCcccCchhhcCCCC
Q 037919 110 LPYLKTLSIFNCFVSS-----------------PVTLSPTLFGA--------LSSLEHLALYSNPTLSGEIPSSLAEIAD 164 (397)
Q Consensus 110 l~~L~~L~ls~~~~~~-----------------~~~~~~~~~~~--------l~~L~~L~l~~n~~l~~~~p~~l~~l~~ 164 (397)
+++|+.|||++|.+.. ...++..+|.+ +++|++|++.. .+......+|.+|++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 7888999998887661 00344555566 66666666665 244444455666666
Q ss_pred CCEEEcccccCCCCCchhhcCCCCCCEEeeecCCC----CCccChhccCCCCCC-EEEc---------------------
Q 037919 165 LRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNL----SGEIPDEIGGMISLT-VLDL--------------------- 218 (397)
Q Consensus 165 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l----~~~~~~~l~~l~~L~-~L~l--------------------- 218 (397)
|++++++.|.+....+..|..+.++.++....+.. .......+..+..|+ .+.+
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 66666666665544444555555554444333110 101111233333333 2222
Q ss_pred ----cCCCCCCCCCccc-cCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCC-eeeccC
Q 037919 219 ----SWNGLQGQVPPSL-GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQ-YLIVYH 292 (397)
Q Consensus 219 ----~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~L~~ 292 (397)
.++-.. .....+ ..+++|+++++++|+++......|.++++|+.+++.+| ++..-+.+|.++++|+ ++++.+
T Consensus 206 ~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 206 FLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred eEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 111000 000001 13789999999999988666678999999999999998 7755667899999999 999988
Q ss_pred CcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeC
Q 037919 293 NPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSL 338 (397)
Q Consensus 293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 338 (397)
.++...+..|.++++|+.+++++|+++...+..|.++++|+.++.
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 787777889999999999999999999777889999999999864
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.3e-15 Score=130.35 Aligned_cols=129 Identities=25% Similarity=0.349 Sum_probs=114.8
Q ss_pred CEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCC
Q 037919 214 TVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHN 293 (397)
Q Consensus 214 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 293 (397)
+.+++++++++ .+|..+. ++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67899999888 5666543 68999999999998 67788999999999999999999877788999999999999999
Q ss_pred cCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcC
Q 037919 294 PINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGT 346 (397)
Q Consensus 294 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 346 (397)
.+++..+..+..+++|++|+|++|+++...+..|..+++|+.|++++|.+.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99998888899999999999999999976667789999999999999999753
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1.5e-15 Score=128.15 Aligned_cols=131 Identities=21% Similarity=0.221 Sum_probs=112.2
Q ss_pred CcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCC
Q 037919 261 LVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDN 340 (397)
Q Consensus 261 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 340 (397)
.+.+++++++++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467899999888 455444 37899999999999987777889999999999999999977777789999999999999
Q ss_pred CcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEeccCCcCCCC
Q 037919 341 NNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDVRGNDKLCT 397 (397)
Q Consensus 341 n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l~~N~~~C~ 397 (397)
|++++..+..+..+++ |++|++++|++++..+..+...+.+ ++|++++|++.|+
T Consensus 86 N~l~~~~~~~~~~l~~--L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQ--LKELALDTNQLKSVPDGIFDRLTSL-QKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTT--CCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcc--cCEEECcCCcceEeCHHHhcCCccc-CEEEecCCCeecc
Confidence 9999777777889999 9999999999986555444556677 8999999999985
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=1.6e-14 Score=137.62 Aligned_cols=248 Identities=12% Similarity=0.113 Sum_probs=141.5
Q ss_pred ccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhc
Q 037919 105 DALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELG 184 (397)
Q Consensus 105 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 184 (397)
.+|.++ +|+.+.+..+ +. .+...+|.++ +|+.+.+.. .+......+|.+|++|+.++++.|.++......|.
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~---~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~ 201 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LK---SIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV 201 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CC---EECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT
T ss_pred hhcccC-CccEEEeCCC-cc---EECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEe
Confidence 345554 5666666554 22 4555556663 577776664 34444455666777777777776666532223333
Q ss_pred CCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEE
Q 037919 185 RLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLL 264 (397)
Q Consensus 185 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 264 (397)
+.+|+.+.+..+ +...-...|.++++|+.+.+..+ ++......|.. .+|+.+.+. +.++......|.++++|+.+
T Consensus 202 -~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 202 -YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEV 276 (401)
T ss_dssp -TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEE
T ss_pred -ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEE
Confidence 566777776633 44344455666777777776653 33233344444 566666663 33433334556667777777
Q ss_pred EcccCCCC-----CCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCC
Q 037919 265 DLSQNCIN-----GPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLD 339 (397)
Q Consensus 265 ~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 339 (397)
++.+|.+. ...+..|.++++|+.+.+.+ .++......|.++++|+.+.+..+ ++.....+|.++ +|+.++++
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence 77666543 12334566667777777763 355555556666677777777443 544445566666 67777777
Q ss_pred CCcCCcCCCccccCCCcCCCCEEEccCCcC
Q 037919 340 NNNLSGTVPPSLGSLPNSMLDQLNLSHNQL 369 (397)
Q Consensus 340 ~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l 369 (397)
+|.+....+..|..++.. ++.+++-.+.+
T Consensus 354 ~n~~~~l~~~~F~~~~~~-l~~l~vp~~~~ 382 (401)
T 4fdw_A 354 GTTPPQVFEKVWYGFPDD-ITVIRVPAESV 382 (401)
T ss_dssp CSSCCBCCCSSCCCSCTT-CCEEEECGGGH
T ss_pred CCCCcccccccccCCCCC-ccEEEeCHHHH
Confidence 776654444455555421 56666665543
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=1.1e-13 Score=131.99 Aligned_cols=245 Identities=12% Similarity=0.115 Sum_probs=191.5
Q ss_pred CCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcCCCC
Q 037919 109 KLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGRLVN 188 (397)
Q Consensus 109 ~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 188 (397)
.+..++.+.+.+. +. .++..+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+.......|.++++
T Consensus 111 ~~~~l~~i~ip~~-i~---~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~ 181 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VK---SIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYN 181 (401)
T ss_dssp ECSSCSEEECCTT-CC---EECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTT
T ss_pred ecCCccEEEECCc-cC---EehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCccc
Confidence 4577888888654 22 5777788886 7999999876 555556678774 799999986 566555677999999
Q ss_pred CCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEccc
Q 037919 189 LEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQ 268 (397)
Q Consensus 189 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (397)
|+.+++..|.++......|. +.+|+.+.+..+ +.......|..+++|+.+++..+ ++......|.+ .+|+.+.+.
T Consensus 182 L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp- 256 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP- 256 (401)
T ss_dssp CCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-
T ss_pred CCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-
Confidence 99999999998844444554 689999999854 66556678999999999999875 44344456666 789999994
Q ss_pred CCCCCCCcccCCCCCCCCeeeccCCcCC-----CCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcC
Q 037919 269 NCINGPIPETLSGLQQLQYLIVYHNPIN-----SRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNL 343 (397)
Q Consensus 269 n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 343 (397)
+.++..-..+|.++++|+++++.++.+. ......|.++++|+.+++. +.++......|.+|++|+.+.+..| +
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c
Confidence 5566555678999999999999988765 3456688999999999999 4577666788999999999999765 6
Q ss_pred CcCCCccccCCCcCCCCEEEccCCcCccc
Q 037919 344 SGTVPPSLGSLPNSMLDQLNLSHNQLSGE 372 (397)
Q Consensus 344 ~~~~p~~~~~l~~~~L~~L~l~~N~l~g~ 372 (397)
+..-..+|..+ + |+.+++.+|.+.-.
T Consensus 335 ~~I~~~aF~~~-~--L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 335 TQINFSAFNNT-G--IKEVKVEGTTPPQV 360 (401)
T ss_dssp CEECTTSSSSS-C--CCEEEECCSSCCBC
T ss_pred cEEcHHhCCCC-C--CCEEEEcCCCCccc
Confidence 65556778888 8 99999999987643
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=3.4e-15 Score=125.88 Aligned_cols=132 Identities=21% Similarity=0.233 Sum_probs=75.5
Q ss_pred cCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCE
Q 037919 232 GTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTS 311 (397)
Q Consensus 232 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 311 (397)
..+++|++|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344455555555555542 232222223566666666655543 44556666666666666665544344456666666
Q ss_pred EEcccccCCcCChh--hccCCCCCCEEeCCCCcCCcCCCcc----ccCCCcCCCCEEEccCCcCc
Q 037919 312 ISVSECGLTGPIPN--FFSSLNTLTALSLDNNNLSGTVPPS----LGSLPNSMLDQLNLSHNQLS 370 (397)
Q Consensus 312 L~L~~n~l~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~p~~----~~~l~~~~L~~L~l~~N~l~ 370 (397)
|++++|+++ .+|. .+..+++|+.|++++|.++ .+|.. +..+|+ |+.|++++|.+.
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~--L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQ--VRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTT--CSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCc--cceeCCCcCCHH
Confidence 667666664 3444 5666677777777777776 34443 666676 777777776654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=3.4e-17 Score=140.95 Aligned_cols=133 Identities=24% Similarity=0.266 Sum_probs=79.8
Q ss_pred CCCCCCEEeCcCCCCCcccCch------hhcCCCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccC
Q 037919 136 ALSSLEHLALYSNPTLSGEIPS------SLAEIADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGG 209 (397)
Q Consensus 136 ~l~~L~~L~l~~n~~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 209 (397)
....++.++++.+ .+.|.+|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..
T Consensus 16 ~~~~l~~l~l~~~-~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 16 ERKSVVATEAEKV-ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HTTCCCCTTCSEE-ECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred hcccccCcchhee-EeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3445555555555 44444443 67777777777777777764 45 6666677777777777766 45555555
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCc-cccCCCCCCcEEEcccCCCCCC
Q 037919 210 MISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIP-PAIGKLSRLVLLDLSQNCINGP 274 (397)
Q Consensus 210 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 274 (397)
+++|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 6666667666666664 33 45566666666666666653211 2455566666666666655443
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=3.7e-17 Score=140.74 Aligned_cols=109 Identities=23% Similarity=0.230 Sum_probs=41.5
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCC
Q 037919 207 IGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQ 286 (397)
Q Consensus 207 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 286 (397)
+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence 3334444444444443332 22 3333444444444444433 233333333344444444444432 22 233333444
Q ss_pred eeeccCCcCCCCCc-cccCCCCCCCEEEcccccCC
Q 037919 287 YLIVYHNPINSRIP-LFLGTLQNLTSISVSECGLT 320 (397)
Q Consensus 287 ~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~ 320 (397)
+|++++|.+++..+ ..+..+++|++|++++|.++
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 44444444332111 22333444444444444443
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.9e-14 Score=121.31 Aligned_cols=132 Identities=22% Similarity=0.148 Sum_probs=109.2
Q ss_pred ccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCC
Q 037919 254 AIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTL 333 (397)
Q Consensus 254 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 333 (397)
.+..+++|+.|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45678899999999999984 454333344999999999999875 678899999999999999996655666899999
Q ss_pred CEEeCCCCcCCcCCCc--cccCCCcCCCCEEEccCCcCccccCCC----hHHHhhccceEeccCCc
Q 037919 334 TALSLDNNNLSGTVPP--SLGSLPNSMLDQLNLSHNQLSGELQFP----EEFIERLGERLDVRGND 393 (397)
Q Consensus 334 ~~L~Ls~n~l~~~~p~--~~~~l~~~~L~~L~l~~N~l~g~~p~~----~~~~~~l~~~l~l~~N~ 393 (397)
++|++++|+++ .+|. .+..+++ |+.|++++|+++ .+|.. +..++.+ ++|++++|+
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~--L~~L~l~~N~i~-~~~~~~~~~~~~l~~L-~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKS--LTYLCILRNPVT-NKKHYRLYVIYKVPQV-RVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTT--CCEEECCSSGGG-GSTTHHHHHHHHCTTC-SEETTEECC
T ss_pred CEEECCCCcCC-cchhhHhhhcCCC--CCEEEecCCCCC-CcHhHHHHHHHHCCcc-ceeCCCcCC
Confidence 99999999996 5665 7889999 999999999997 45653 5555666 899999886
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=7.6e-14 Score=116.85 Aligned_cols=110 Identities=25% Similarity=0.322 Sum_probs=98.1
Q ss_pred CCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCC
Q 037919 260 RLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLD 339 (397)
Q Consensus 260 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 339 (397)
..+.+++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999998 4676553 789999999999999889999999999999999999997777788999999999999
Q ss_pred CCcCCcCCCccccCCCcCCCCEEEccCCcCccccC
Q 037919 340 NNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQ 374 (397)
Q Consensus 340 ~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p 374 (397)
+|++++..+..+..+++ |+.|++++|++++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~--L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKS--LTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTT--CCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCC--CCEEEeCCCCCCCCch
Confidence 99999777777999999 9999999999987655
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.4e-13 Score=115.15 Aligned_cols=110 Identities=24% Similarity=0.248 Sum_probs=98.1
Q ss_pred cCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcc
Q 037919 236 LLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVS 315 (397)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 315 (397)
..+.+++++|.++. +|..+ .++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 46789999999984 66655 4799999999999998888899999999999999999998888888999999999999
Q ss_pred cccCCcCChhhccCCCCCCEEeCCCCcCCcCCC
Q 037919 316 ECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVP 348 (397)
Q Consensus 316 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 348 (397)
+|++++..+..|..+++|++|+|++|.+++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999997777789999999999999999986543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=2.2e-13 Score=114.50 Aligned_cols=109 Identities=23% Similarity=0.306 Sum_probs=95.7
Q ss_pred CcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCC
Q 037919 261 LVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDN 340 (397)
Q Consensus 261 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 340 (397)
-+.+++++|+++ .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367999999987 6776664 8999999999999998899999999999999999999976666789999999999999
Q ss_pred CcCCcCCCccccCCCcCCCCEEEccCCcCccccC
Q 037919 341 NNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQ 374 (397)
Q Consensus 341 n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p 374 (397)
|++++..+..+..+++ |+.|++++|++....+
T Consensus 91 N~l~~l~~~~~~~l~~--L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKS--LTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTT--CSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccC--CCEEEeCCCCcccccc
Confidence 9999766666899999 9999999999986543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=4.5e-13 Score=112.54 Aligned_cols=107 Identities=23% Similarity=0.246 Sum_probs=95.4
Q ss_pred CceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEccc
Q 037919 237 LQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSE 316 (397)
Q Consensus 237 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 316 (397)
-+.+++++|.++ .+|..+. ++|+.|++++|.+++..|..+..+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368999999986 6776553 7999999999999988888999999999999999999997777789999999999999
Q ss_pred ccCCcCChhhccCCCCCCEEeCCCCcCCcC
Q 037919 317 CGLTGPIPNFFSSLNTLTALSLDNNNLSGT 346 (397)
Q Consensus 317 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 346 (397)
|++++..+..|..+++|++|+|++|.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999976666799999999999999999854
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=3.5e-15 Score=140.90 Aligned_cols=188 Identities=18% Similarity=0.154 Sum_probs=91.5
Q ss_pred CCCCEEEcccccCCCCCchhhc-----CCCCCCEEeeecCCCCCccChhc-cCCCCCCEEEccCCCCCCCCCccccCCcc
Q 037919 163 ADLRVLSLSQNNLQGNIPKELG-----RLVNLEQLDLSYNNLSGEIPDEI-GGMISLTVLDLSWNGLQGQVPPSLGTLQL 236 (397)
Q Consensus 163 ~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 236 (397)
+.|++|++++|.++......+. ..++|++|+|++|.++......+ ..+++|++|++++|.++......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~---- 147 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR---- 147 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH----
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH----
Confidence 4566666666666532222221 12456666666665543222111 1233445555555544322111111
Q ss_pred CceeeccCCcCCCCCcccc-CCCCCCcEEEcccCCCCC----CCcccCCCCCCCCeeeccCCcCCCCC----ccccCCCC
Q 037919 237 LQKIDLGSNKLVGSIPPAI-GKLSRLVLLDLSQNCING----PIPETLSGLQQLQYLIVYHNPINSRI----PLFLGTLQ 307 (397)
Q Consensus 237 L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~ 307 (397)
..+ ...++|++|++++|.++. .++..+...++|++|+|++|.+++.. ...+...+
T Consensus 148 ----------------~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 148 ----------------DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp ----------------HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred ----------------HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 111 124456666666665543 13334455666677777776665422 33445556
Q ss_pred CCCEEEcccccCCcC----ChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcC---CCCEEE--ccCCcCc
Q 037919 308 NLTSISVSECGLTGP----IPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNS---MLDQLN--LSHNQLS 370 (397)
Q Consensus 308 ~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~---~L~~L~--l~~N~l~ 370 (397)
+|++|+|++|.+++. ++..+...++|++|+|++|.|++.....+..+... .++.+. +..|.++
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 777777777777643 33444456777788888877775443334333221 144555 5555554
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=2.8e-14 Score=134.64 Aligned_cols=138 Identities=22% Similarity=0.223 Sum_probs=96.4
Q ss_pred ccCceeeccCCcCCCCCcccc-CCCCCCcEEEcccCCCCCCCcccC-----CCCCCCCeeeccCCcCCCCC----ccccC
Q 037919 235 QLLQKIDLGSNKLVGSIPPAI-GKLSRLVLLDLSQNCINGPIPETL-----SGLQQLQYLIVYHNPINSRI----PLFLG 304 (397)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~----~~~~~ 304 (397)
++|++|++++|.+++.....+ ..+++|+.|++++|.++......+ ...++|++|+|++|.+++.. +..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 355555555555433211111 223467788888887765333332 35688999999999986532 33446
Q ss_pred CCCCCCEEEcccccCCcC----ChhhccCCCCCCEEeCCCCcCCcC----CCccccCCCcCCCCEEEccCCcCccccC
Q 037919 305 TLQNLTSISVSECGLTGP----IPNFFSSLNTLTALSLDNNNLSGT----VPPSLGSLPNSMLDQLNLSHNQLSGELQ 374 (397)
Q Consensus 305 ~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~~~L~~L~l~~N~l~g~~p 374 (397)
..++|++|+|++|.+++. ++..+...++|+.|+|++|.+++. ++..+...+. |++|+|++|.|++.-.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~--L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS--LELLHLYFNELSSEGR 256 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSS--CCEEECTTSSCCHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCC--CCEEeccCCCCCHHHH
Confidence 789999999999999864 356677788999999999999853 3445556788 9999999999985543
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=6.1e-12 Score=117.64 Aligned_cols=127 Identities=20% Similarity=0.252 Sum_probs=99.7
Q ss_pred EEEcccC-CCCCCCcccCCCCCCCCeeeccC-CcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCC
Q 037919 263 LLDLSQN-CINGPIPETLSGLQQLQYLIVYH-NPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDN 340 (397)
Q Consensus 263 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 340 (397)
.++.+++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4688887 888 5788 99999999999996 999988888899999999999999999998888999999999999999
Q ss_pred CcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhcc--ceEeccCCcCCC
Q 037919 341 NNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLG--ERLDVRGNDKLC 396 (397)
Q Consensus 341 n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~--~~l~l~~N~~~C 396 (397)
|+|++..+..+.. .. |+.|+|.+|++...-.. ..+..+. ....+..++..|
T Consensus 90 N~l~~~~~~~~~~-~~--L~~l~l~~N~~~c~c~l--~~~~~~~~~~~~~l~~~~~~C 142 (347)
T 2ifg_A 90 NALESLSWKTVQG-LS--LQELVLSGNPLHCSCAL--RWLQRWEEEGLGGVPEQKLQC 142 (347)
T ss_dssp SCCSCCCSTTTCS-CC--CCEEECCSSCCCCCGGG--HHHHHHHHTTCSSCGGGCCCC
T ss_pred CccceeCHHHccc-CC--ceEEEeeCCCccCCCcc--HHHHHHHHhCcccccccCCCC
Confidence 9999654444444 44 99999999999865432 2222221 233445566666
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.28 E-value=2.4e-10 Score=108.78 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=52.7
Q ss_pred cCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcC
Q 037919 278 TLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNS 357 (397)
Q Consensus 278 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~ 357 (397)
.+..+.+|+++.+..+ ++......|.++++|+.+++..+ ++.....+|.+|.+|+.+++..+ ++..-..+|..+++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~- 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN- 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT-
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC-
Confidence 3455666666666543 44444456667777777777543 54444566777777777777665 54344456777777
Q ss_pred CCCEEEccCC
Q 037919 358 MLDQLNLSHN 367 (397)
Q Consensus 358 ~L~~L~l~~N 367 (397)
|+.+++..+
T Consensus 368 -L~~i~lp~~ 376 (394)
T 4fs7_A 368 -LKKVELPKR 376 (394)
T ss_dssp -CCEEEEEGG
T ss_pred -CCEEEECCC
Confidence 777777544
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.5e-11 Score=114.94 Aligned_cols=106 Identities=18% Similarity=0.160 Sum_probs=92.8
Q ss_pred ceeeccCC-cCCCCCccccCCCCCCcEEEccc-CCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcc
Q 037919 238 QKIDLGSN-KLVGSIPPAIGKLSRLVLLDLSQ-NCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVS 315 (397)
Q Consensus 238 ~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 315 (397)
..++++++ .++ .+|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 787 4787 99999999999996 99998777889999999999999999999888899999999999999
Q ss_pred cccCCcCChhhccCCCCCCEEeCCCCcCCcC
Q 037919 316 ECGLTGPIPNFFSSLNTLTALSLDNNNLSGT 346 (397)
Q Consensus 316 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 346 (397)
+|+|++..+..+..++ |+.|+|.+|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999976666666665 99999999999853
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.20 E-value=1.3e-09 Score=103.54 Aligned_cols=255 Identities=12% Similarity=0.120 Sum_probs=148.2
Q ss_pred ccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchh
Q 037919 103 ISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKE 182 (397)
Q Consensus 103 ~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 182 (397)
-..+|.++++|+.+.+..+.-.....+...+|..+.+|+.+.+..+ +......+|..+.+|+.+.+..+ +.......
T Consensus 79 g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~ 155 (394)
T 4gt6_A 79 GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG-VTSVADGM 155 (394)
T ss_dssp CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce-eeeecccc
Confidence 3456778888888887765322222566667777777777777654 34344456777777777777643 22233345
Q ss_pred hcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCc----------------
Q 037919 183 LGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNK---------------- 246 (397)
Q Consensus 183 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~---------------- 246 (397)
+..+..|+.+.+..+ +...-...+. ..+|+.+.+..+-. ......+..+.+++........
T Consensus 156 F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (394)
T 4gt6_A 156 FSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGD 232 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSC
T ss_pred eecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceecccccccccccceeeccccccc
Confidence 566677777766543 2211122222 23455555543211 1122233333333333221111
Q ss_pred --------------------CCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCC
Q 037919 247 --------------------LVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTL 306 (397)
Q Consensus 247 --------------------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 306 (397)
+.......|..++.|+.+.+..+.. ..-..++.++++|+.+.+. +.++......|.++
T Consensus 233 ~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c 310 (394)
T 4gt6_A 233 YALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGC 310 (394)
T ss_dssp EEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTC
T ss_pred ccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCC
Confidence 1111123456667777777755432 2334567778888888875 34555555677888
Q ss_pred CCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcC
Q 037919 307 QNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQL 369 (397)
Q Consensus 307 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l 369 (397)
.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++..-..+|.++++ |+.+++.++..
T Consensus 311 ~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~--L~~i~~~~~~~ 369 (394)
T 4gt6_A 311 ISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA--LNNIEYSGSRS 369 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT--CCEEEESSCHH
T ss_pred CCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC--CCEEEECCcee
Confidence 88888888754 55455667888888888888654 55344557888888 88888887754
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.13 E-value=1.1e-09 Score=104.11 Aligned_cols=237 Identities=15% Similarity=0.054 Sum_probs=153.4
Q ss_pred cccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhcC
Q 037919 106 ALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELGR 185 (397)
Q Consensus 106 ~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 185 (397)
+|.++++|+.+.+..+.. .+....|.++.+|+.+++..+ +......++.++..|+.+.+..+... +......
T Consensus 157 aF~~c~~L~~i~l~~~~~----~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~ 228 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSME----TLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS 228 (394)
T ss_dssp TTTTCTTCCEEECCTTCC----EECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT
T ss_pred hhcccCCCcEEecCCccc----eeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceE--eehhhcc
Confidence 456666666666654321 345555666666666666554 33333445666666666665544321 2222334
Q ss_pred CCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEE
Q 037919 186 LVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLD 265 (397)
Q Consensus 186 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 265 (397)
..+|+.+.+.... .......+..+..|+.+.+..+... .....+..+..++.+......+. ...+..+.+|+.+.
T Consensus 229 ~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 229 KTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVK 303 (394)
T ss_dssp TCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEE
T ss_pred cCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccc
Confidence 4566666665432 2223345677778888887665432 34456777778887777655432 24577888999999
Q ss_pred cccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCc
Q 037919 266 LSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSG 345 (397)
Q Consensus 266 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~ 345 (397)
+..+ ++..-..++.++.+|+++++..+ ++.....+|.++++|+.+++..+ ++.....+|.+|++|+.+++..+ ++
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~- 378 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE- 378 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-
T ss_pred cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-
Confidence 8654 55344567889999999999754 66666678999999999999876 66566778999999999999865 22
Q ss_pred CCCccccCCCcCCCCEE
Q 037919 346 TVPPSLGSLPNSMLDQL 362 (397)
Q Consensus 346 ~~p~~~~~l~~~~L~~L 362 (397)
.+...|.++++ |+.+
T Consensus 379 ~~~~~F~~c~~--L~~I 393 (394)
T 4fs7_A 379 QYRYDFEDTTK--FKWI 393 (394)
T ss_dssp GGGGGBCTTCE--EEEE
T ss_pred EhhheecCCCC--CcEE
Confidence 23456777777 6654
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.11 E-value=4.6e-11 Score=111.87 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=33.8
Q ss_pred CCCCCEEEcccccCCcCChhhc---cCCCCCCEEeCCCCcCCcC----CCccccCCCcCCCCEEEccCCcCcc
Q 037919 306 LQNLTSISVSECGLTGPIPNFF---SSLNTLTALSLDNNNLSGT----VPPSLGSLPNSMLDQLNLSHNQLSG 371 (397)
Q Consensus 306 ~~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~~~L~~L~l~~N~l~g 371 (397)
+++|++|++++|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++ |+.|++++|.++.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~--L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH--LKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTT--CSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCc--ceEEECCCCcCCH
Confidence 4566666666666554332222 2355666666666666542 2222334455 6666666666553
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.03 E-value=1.6e-10 Score=108.14 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=41.2
Q ss_pred CCCCCeeeccCCcCCCCCcccc---CCCCCCCEEEcccccCCcCC----hhhccCCCCCCEEeCCCCcCCcCCCccccC-
Q 037919 282 LQQLQYLIVYHNPINSRIPLFL---GTLQNLTSISVSECGLTGPI----PNFFSSLNTLTALSLDNNNLSGTVPPSLGS- 353 (397)
Q Consensus 282 l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~- 353 (397)
+++|+.|++.+|.+.+..+..+ ..+++|++|+|+.|.+++.. +..+..+++|+.|++++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 4555555555555443221111 23456666666666665432 222234566677777766665433333332
Q ss_pred CCcCCCCEEEccCCc
Q 037919 354 LPNSMLDQLNLSHNQ 368 (397)
Q Consensus 354 l~~~~L~~L~l~~N~ 368 (397)
+ ...++++.++
T Consensus 331 l----g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L----PMKIDVSDSQ 341 (362)
T ss_dssp C----CSEEECCSBC
T ss_pred c----CCEEEecCCc
Confidence 1 2346666665
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.97 E-value=1.9e-08 Score=95.62 Aligned_cols=247 Identities=11% Similarity=0.153 Sum_probs=149.5
Q ss_pred ccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhc
Q 037919 105 DALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELG 184 (397)
Q Consensus 105 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 184 (397)
.+|.++..|+.+.+..+ +. .+....|..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-...|
T Consensus 108 ~aF~~c~~L~~i~~~~~-~~---~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF- 179 (394)
T 4gt6_A 108 QAFMFCSELTDIPILDS-VT---EIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAF- 179 (394)
T ss_dssp TTTTTCTTCCBCGGGTT-CS---EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTT-
T ss_pred hhchhcccceeeccCCc-cc---eehhhhhhhhcccccccccce--eeeecccceecccccccccccce-eeEeccccc-
Confidence 45667777777766543 22 455666777888888888654 33334456677777777777654 221112223
Q ss_pred CCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCC------------------------------------CCCCCCC
Q 037919 185 RLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWN------------------------------------GLQGQVP 228 (397)
Q Consensus 185 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n------------------------------------~l~~~~~ 228 (397)
....|+.+.+..+... .....+..+.+++....... .+.....
T Consensus 180 ~~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~ 258 (394)
T 4gt6_A 180 TGTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIET 258 (394)
T ss_dssp TTCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECT
T ss_pred cccceeEEEECCcccc-cccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEccc
Confidence 2345666655443221 22223334444443332211 1111123
Q ss_pred ccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCC
Q 037919 229 PSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQN 308 (397)
Q Consensus 229 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 308 (397)
..|..+..|+.+.+..+... .....|.++++|+.+.+. +.++..-..+|.++.+|+++.+..+ ++.....+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 45677888999988765432 344668889999999996 3455444567899999999999764 66656678999999
Q ss_pred CCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcC
Q 037919 309 LTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQL 369 (397)
Q Consensus 309 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l 369 (397)
|+.+.+..+ ++.....+|.+|++|+.+++.++.... ..+..... |+.+.+..|.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~--L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSG--LQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCC--C----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCC--CCEEEeCCCCE
Confidence 999999754 665667789999999999999985542 34556666 88887776654
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.89 E-value=1.4e-07 Score=88.97 Aligned_cols=261 Identities=12% Similarity=0.092 Sum_probs=138.2
Q ss_pred cEEEEEcCCCCCCCCccccccccccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcC
Q 037919 82 HVTKVHIGPDIITPTCKISANISDALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAE 161 (397)
Q Consensus 82 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~ 161 (397)
+++++.+.. +++..-..+|.+|.+|+.+++..+ +. .+...+|.++ +|+.+.+..+ +......+|..
T Consensus 47 ~i~~v~ip~-------~vt~Ig~~aF~~C~~L~~I~lp~~-v~---~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~ 112 (379)
T 4h09_A 47 RISEVRVNS-------GITSIGEANFNSCYNMTKVTVAST-VT---SIGDGAFADT-KLQSYTGMER--VKKFGDYVFQG 112 (379)
T ss_dssp GCSEEEECT-------TEEEECTTTTTTCTTCCEEEECTT-CC---EECTTTTTTC-CCCEEEECTT--CCEECTTTTTT
T ss_pred CCEEEEeCC-------CccChHHHHhhCCCCCCEEEeCCc-ce---EechhhhcCC-CCceEECCce--eeEeccceecc
Confidence 566777763 444445568889999999998654 33 5667777776 5777776654 33333334444
Q ss_pred CCCCCEEEcccccCCCCCchhhcCCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCC------------------
Q 037919 162 IADLRVLSLSQNNLQGNIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGL------------------ 223 (397)
Q Consensus 162 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l------------------ 223 (397)
.+|+.+.+..+- .......|.+ .+++.+.+..+ ++......+..+.+++.+.+..+..
T Consensus 113 -~~L~~i~lp~~~-~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 113 -TDLDDFEFPGAT-TEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp -CCCSEEECCTTC-CEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred -CCcccccCCCcc-cccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceec
Confidence 468888776532 1111122222 23333333222 1111222233334444333322111
Q ss_pred -----------------CCCCCccccCCccCceeeccCCcCCCCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCC
Q 037919 224 -----------------QGQVPPSLGTLQLLQKIDLGSNKLVGSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQ 286 (397)
Q Consensus 224 -----------------~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 286 (397)
.......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-..++.++.+|+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp ECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred cccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 0011223334445555555432 22122344556666777666543 3323334566667777
Q ss_pred eeeccCCcCCCCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccC
Q 037919 287 YLIVYHNPINSRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSH 366 (397)
Q Consensus 287 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~ 366 (397)
.+.+..+ +.......+.++++|+.+.+.++.++......|.++.+|+.+.+..+ ++..-..+|.++.+ |+.+.+..
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~--L~~i~ip~ 342 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA--LSTISYPK 342 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT--CCCCCCCT
T ss_pred ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC--CCEEEECC
Confidence 7776543 44444456667777777777777666555567777777777777654 44333445666666 77666644
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.65 E-value=2e-06 Score=80.97 Aligned_cols=266 Identities=11% Similarity=0.075 Sum_probs=166.5
Q ss_pred ccccCCCCCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEcccccCCCCCchhhc
Q 037919 105 DALLKLPYLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQNNLQGNIPKELG 184 (397)
Q Consensus 105 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 184 (397)
+++....+|+.+.+... ++ .|+..+|.++.+|+.+++..+ +...-..+|.++ +|+.+.+..+ +.......|.
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt---~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~ 111 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-IT---SIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQ 111 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EE---EECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTT
T ss_pred cccccccCCEEEEeCCC-cc---ChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceec
Confidence 34566778999988643 22 677888999999999999764 555556678776 6888887654 4422233344
Q ss_pred CCCCCCEEeeecCCCCCccChhccCCCCCCEEEccCCCCCCCCCccccCCccCceeeccCCcCC----------------
Q 037919 185 RLVNLEQLDLSYNNLSGEIPDEIGGMISLTVLDLSWNGLQGQVPPSLGTLQLLQKIDLGSNKLV---------------- 248 (397)
Q Consensus 185 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---------------- 248 (397)
. .+|+.+.+..+... .....+.++ +++.+.+..+ ++......+..+..++.+.+..+...
T Consensus 112 ~-~~L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T 4h09_A 112 G-TDLDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL 187 (379)
T ss_dssp T-CCCSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred c-CCcccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccccee
Confidence 3 58999998765322 223334443 5666665433 33233345556666666655432211
Q ss_pred -------------------CCCccccCCCCCCcEEEcccCCCCCCCcccCCCCCCCCeeeccCCcCCCCCccccCCCCCC
Q 037919 249 -------------------GSIPPAIGKLSRLVLLDLSQNCINGPIPETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNL 309 (397)
Q Consensus 249 -------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 309 (397)
......+....+|+.+.+..+ +.......+..+..|+++.+..+ ++......+.++.+|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp EECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 001122334455666655433 23233345677888888888665 555555678888999
Q ss_pred CEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCccccCCChHHHhhccceEec
Q 037919 310 TSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSGELQFPEEFIERLGERLDV 389 (397)
Q Consensus 310 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g~~p~~~~~~~~l~~~l~l 389 (397)
+.+.+..+ ++......|.++++|+.+.+.++.++..-...|..+.+ |+.+.+..+ ++---..++..+..+ +.+.+
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~--L~~i~lp~~-l~~I~~~aF~~C~~L-~~i~i 340 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK--LSSVTLPTA-LKTIQVYAFKNCKAL-STISY 340 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT--CCEEECCTT-CCEECTTTTTTCTTC-CCCCC
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC--CCEEEcCcc-ccEEHHHHhhCCCCC-CEEEE
Confidence 99998654 55455567899999999999998888555678889998 999999754 432223334444455 44544
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=4.8e-09 Score=88.68 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=73.1
Q ss_pred ccCCCCCCcEEEcccC-CCCCC----CcccCCCCCCCCeeeccCCcCCCCC----ccccCCCCCCCEEEcccccCCcC--
Q 037919 254 AIGKLSRLVLLDLSQN-CINGP----IPETLSGLQQLQYLIVYHNPINSRI----PLFLGTLQNLTSISVSECGLTGP-- 322 (397)
Q Consensus 254 ~l~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~-- 322 (397)
.+...++|++|++++| .+... +...+...++|++|+|++|.+.... ...+...+.|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445566666666666 55532 3344555667777777777765422 22334456777888888877653
Q ss_pred --ChhhccCCCCCCEEeC--CCCcCCcC----CCccccCCCcCCCCEEEccCCcCc
Q 037919 323 --IPNFFSSLNTLTALSL--DNNNLSGT----VPPSLGSLPNSMLDQLNLSHNQLS 370 (397)
Q Consensus 323 --~~~~~~~~~~L~~L~L--s~n~l~~~----~p~~~~~l~~~~L~~L~l~~N~l~ 370 (397)
+...+...++|++|+| ++|.+... +...+...+. |++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~--L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT--LLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSS--CCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCC--cCEEeccCCCCC
Confidence 3455666778888888 77888753 3344555566 888888888875
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=1.1e-08 Score=86.52 Aligned_cols=89 Identities=18% Similarity=0.153 Sum_probs=49.8
Q ss_pred CCCCCCcEEEcccCCCCCC----CcccCCCCCCCCeeeccCCcCCCC----CccccCCCCCCCEEEc--ccccCCcC---
Q 037919 256 GKLSRLVLLDLSQNCINGP----IPETLSGLQQLQYLIVYHNPINSR----IPLFLGTLQNLTSISV--SECGLTGP--- 322 (397)
Q Consensus 256 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L--~~n~l~~~--- 322 (397)
...++|++|++++|.+... +...+...++|++|+|++|.+++. +...+...++|++|+| ++|.+...
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3344555555555555431 223334445566666666666542 2234455566777777 66776643
Q ss_pred -ChhhccCCCCCCEEeCCCCcCC
Q 037919 323 -IPNFFSSLNTLTALSLDNNNLS 344 (397)
Q Consensus 323 -~~~~~~~~~~L~~L~Ls~n~l~ 344 (397)
+...+...++|++|+|++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 3344455677888888877764
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=4.5e-08 Score=87.13 Aligned_cols=65 Identities=23% Similarity=0.362 Sum_probs=33.9
Q ss_pred CCCCCEEEcccccCCc--CChhhccCCCCCCEEeCCCCcCCcCCCccccCCC--cCCCCEEEccCCcCccccC
Q 037919 306 LQNLTSISVSECGLTG--PIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLP--NSMLDQLNLSHNQLSGELQ 374 (397)
Q Consensus 306 ~~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~--~~~L~~L~l~~N~l~g~~p 374 (397)
+++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. . |++|+|++|.+++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~--L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLK--LEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSC--CSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCC--cceEEccCCcCccccC
Confidence 4555555555555554 2334444555666666666666543 1222222 4 6666666666665554
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.29 E-value=3.9e-07 Score=75.38 Aligned_cols=84 Identities=13% Similarity=0.120 Sum_probs=40.8
Q ss_pred CCCEEEcCCCCCCCCCccChhhhCCCCCCCEEeCcCCCCCcccCchhhcCC----CCCCEEEccccc-CCCCCchhhcCC
Q 037919 112 YLKTLSIFNCFVSSPVTLSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEI----ADLRVLSLSQNN-LQGNIPKELGRL 186 (397)
Q Consensus 112 ~L~~L~ls~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l 186 (397)
+|++||+++|.++. ..-..+..+++|++|+|++|..+++.--..+..+ ++|++|+|++|. +++..-..+.++
T Consensus 62 ~L~~LDLs~~~Itd---~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMS---IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCG---GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred eEeEEeCcCCCccH---HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 45566666555442 1122245555666666665544554444444443 245555555543 443333334445
Q ss_pred CCCCEEeeecCC
Q 037919 187 VNLEQLDLSYNN 198 (397)
Q Consensus 187 ~~L~~L~L~~n~ 198 (397)
++|++|+++++.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 555555555543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=9.6e-07 Score=78.52 Aligned_cols=80 Identities=29% Similarity=0.317 Sum_probs=56.7
Q ss_pred cCCCCCCEEEcccccCCC--CCchhhcCCCCCCEEeeecCCCCCccChhccCCC--CCCEEEccCCCCCCCCCc------
Q 037919 160 AEIADLRVLSLSQNNLQG--NIPKELGRLVNLEQLDLSYNNLSGEIPDEIGGMI--SLTVLDLSWNGLQGQVPP------ 229 (397)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~------ 229 (397)
.++++|++|+|++|.+++ .++..+..+++|+.|+|++|++.+. ..+..+. +|++|++++|.+.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 567888888888888876 3445666788888888888888753 2233333 888888888888765542
Q ss_pred -cccCCccCceee
Q 037919 230 -SLGTLQLLQKID 241 (397)
Q Consensus 230 -~l~~l~~L~~L~ 241 (397)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 356778888775
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=7.5e-07 Score=73.70 Aligned_cols=82 Identities=20% Similarity=0.155 Sum_probs=38.4
Q ss_pred CCCeeeccCCcCCCCCccccCCCCCCCEEEccccc-CCcCChhhccCC----CCCCEEeCCCC-cCCcCCCccccCCCcC
Q 037919 284 QLQYLIVYHNPINSRIPLFLGTLQNLTSISVSECG-LTGPIPNFFSSL----NTLTALSLDNN-NLSGTVPPSLGSLPNS 357 (397)
Q Consensus 284 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~----~~L~~L~Ls~n-~l~~~~p~~~~~l~~~ 357 (397)
+|++|+++++.++......+..+++|++|+|++|. +++..-..+..+ ++|++|+|++| ++++.--..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~- 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN- 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT-
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC-
Confidence 34444454444444333344445555555555552 443333333332 24555555554 354433334445555
Q ss_pred CCCEEEccCC
Q 037919 358 MLDQLNLSHN 367 (397)
Q Consensus 358 ~L~~L~l~~N 367 (397)
|+.|+++++
T Consensus 141 -L~~L~L~~c 149 (176)
T 3e4g_A 141 -LKYLFLSDL 149 (176)
T ss_dssp -CCEEEEESC
T ss_pred -CCEEECCCC
Confidence 555555555
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.54 E-value=0.00013 Score=57.38 Aligned_cols=57 Identities=32% Similarity=0.442 Sum_probs=38.7
Q ss_pred EEEcccccCC-cCChhhccCCCCCCEEeCCCCcCCcCCCccccCCCcCCCCEEEccCCcCcc
Q 037919 311 SISVSECGLT-GPIPNFFSSLNTLTALSLDNNNLSGTVPPSLGSLPNSMLDQLNLSHNQLSG 371 (397)
Q Consensus 311 ~L~L~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~~~L~~L~l~~N~l~g 371 (397)
.++.++++++ ..+|..+. ++|+.|+|++|+|+..-+..|..+++ |+.|+|++|.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~--L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPA--LRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTT--CCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccc--cCEEEecCCCeec
Confidence 6677777775 35554332 46788888888887555556677777 8888888877753
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.52 E-value=2.5e-05 Score=65.74 Aligned_cols=113 Identities=12% Similarity=0.129 Sum_probs=67.4
Q ss_pred CCCCCCcEEEcccC-CCCC----CCcccCCCCCCCCeeeccCCcCCCCCc----cccCCCCCCCEEEcccccCCcC----
Q 037919 256 GKLSRLVLLDLSQN-CING----PIPETLSGLQQLQYLIVYHNPINSRIP----LFLGTLQNLTSISVSECGLTGP---- 322 (397)
Q Consensus 256 ~~l~~L~~L~l~~n-~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~---- 322 (397)
.+-+.|++|++++| .+.. .+.+.+..-+.|++|+|++|.+.+... ..+..-+.|++|+|++|.|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666777664 5542 133455556677777777777754322 2333456777777777777653
Q ss_pred ChhhccCCCCCCEEeCCCC---cCCc----CCCccccCCCcCCCCEEEccCCcCc
Q 037919 323 IPNFFSSLNTLTALSLDNN---NLSG----TVPPSLGSLPNSMLDQLNLSHNQLS 370 (397)
Q Consensus 323 ~~~~~~~~~~L~~L~Ls~n---~l~~----~~p~~~~~l~~~~L~~L~l~~N~l~ 370 (397)
+...+...+.|++|+|++| .+.. .+.+.+...+. |..|+++.|.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~t--L~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENES--LLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSS--CCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCC--cCeEeccCCCcc
Confidence 3344556667888888765 3332 23344555566 888888777654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.35 E-value=5.2e-05 Score=63.84 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=43.3
Q ss_pred CCCCCcEEEcccCCCCC----CCcccCCCCCCCCeeeccCCcCCCCCc----cccCCCCCCCEEEcccc---cCCc----
Q 037919 257 KLSRLVLLDLSQNCING----PIPETLSGLQQLQYLIVYHNPINSRIP----LFLGTLQNLTSISVSEC---GLTG---- 321 (397)
Q Consensus 257 ~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n---~l~~---- 321 (397)
.-+.|+.|+|++|++.. .+.+.+..-+.|++|+|++|.++.... ..+..-+.|++|+|++| .+..
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 34445555555555442 122333344556666666665543221 23344455666666644 2222
Q ss_pred CChhhccCCCCCCEEeCCCCcC
Q 037919 322 PIPNFFSSLNTLTALSLDNNNL 343 (397)
Q Consensus 322 ~~~~~~~~~~~L~~L~Ls~n~l 343 (397)
.+...+..-++|+.|+++.|.+
T Consensus 148 ~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 148 DMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhCCCcCeEeccCCCc
Confidence 2334455556777777776644
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.68 E-value=0.0034 Score=49.03 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=46.1
Q ss_pred CeeeccCCcCC-CCCccccCCCCCCCEEEcccccCCcCChhhccCCCCCCEEeCCCCcCCc
Q 037919 286 QYLIVYHNPIN-SRIPLFLGTLQNLTSISVSECGLTGPIPNFFSSLNTLTALSLDNNNLSG 345 (397)
Q Consensus 286 ~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~ 345 (397)
..++.+++.++ ..+|..+. ++|++|+|++|+|+..-+..|..+++|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888888886 24565443 579999999999996667778889999999999998863
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.60 E-value=13 Score=26.92 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=21.7
Q ss_pred cChhhhCCCCCCCEEeCcCCCCCcccCchhhcCCCCCCEEEccc
Q 037919 129 LSPTLFGALSSLEHLALYSNPTLSGEIPSSLAEIADLRVLSLSQ 172 (397)
Q Consensus 129 ~~~~~~~~l~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~ 172 (397)
|....|.++.+|+.+.+..+ ++..-..+|.+|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 34444555555555555543 3333344555566666555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.80 E-value=28 Score=25.04 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=17.2
Q ss_pred ccCCCCCCCCeeeccCCcCCCCCccccCCCCCCCEEEcc
Q 037919 277 ETLSGLQQLQYLIVYHNPINSRIPLFLGTLQNLTSISVS 315 (397)
Q Consensus 277 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 315 (397)
.+|.++.+|+++.+-.+ ++......|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34445555555555432 333333444445555544443
Done!