BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037920
(505 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 156 KLLDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNL 214
KL DI+ +++L L L L G+ ++ LP V +L L+ L L + +L+ +P V L
Sbjct: 74 KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKL 132
Query: 215 SHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
++L LY+ +N +++ + +L +LT L+L + +LP G+F
Sbjct: 133 TNLTYLYLYHN-------QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPI--EVSELARLRLLGLRDCRELEVIPANV 210
+N + + ++ L + L L G+ + + E++ L L L G +L+ +P V
Sbjct: 49 NNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTG----NQLQSLPNGV 104
Query: 211 LSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
L++L+EL + N +++ + + +L +LT L L+ + +LP+G+F
Sbjct: 105 FDKLTNLKELVLVEN-------QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVF 153
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 37/167 (22%)
Query: 105 DQESSSLT-IPNKFFERMMQVRVINLTNINXXXXXXXXXXXXXXXXXXXDNCKLLDITVV 163
D +S+ L+ +P+K F R+ ++R++ L + + + L +
Sbjct: 43 DLQSNKLSSLPSKAFHRLTKLRLLYLND---------------------NKLQTLPAGIF 81
Query: 164 RDLKKLEILCLRGSNIKMLPIEVSE----LARLRLLGLRDCRELEVIPANVLSNLSHLEE 219
++LK LE L + + ++ LPI V + LA LRL D +L+ +P V +L+ L
Sbjct: 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL----DRNQLKSLPPRVFDSLTKLTY 137
Query: 220 LYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
L +GYN E++ + +L L L L+ + +P G F
Sbjct: 138 LSLGYN-------ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 156 KLLDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNL 214
KL DI+ +++L L L L G+ ++ LP V +L L+ L L + +L+ +P V L
Sbjct: 74 KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKL 132
Query: 215 SHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYK 274
++L L + +N +++ + +L +LT L+L + +LP G+F Q
Sbjct: 133 TNLTYLNLAHN-------QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
Query: 275 IHIGGYYYAGVWRRELKICPDS 296
+ + ++ +LK PD
Sbjct: 186 LRL--------YQNQLKSVPDG 199
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 14/135 (10%)
Query: 158 LDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSH 216
L+ V L L+ L L + + LP+ V L +L +L L +L V+P+ V L H
Sbjct: 55 LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVH 113
Query: 217 LEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIH 276
L+EL++ N + +E L HLT L L + ++P G F R
Sbjct: 114 LKELFMCCNKLTELPRGIE--------RLTHLTHLALDQNQLKSIPHGAF----DRLSSL 161
Query: 277 IGGYYYAGVWRRELK 291
Y + W E +
Sbjct: 162 THAYLFGNPWDCECR 176
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 169 LEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFG 228
LE L L + ++ LP ++ L RLR L +R C EL +P + S + E + G +
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE--HQGLVNLQ 186
Query: 229 KWEVEMEGVKN--ASLHELKHLTSLELHIKDVNTL-PRGLFFPKLQ 271
+E G+++ AS+ L++L SL++ ++ L P PKL+
Sbjct: 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 156 KLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLS 215
K+L + RD+ +L L G+ ++P E+S L L+ L + R + + SN++
Sbjct: 23 KVLPKGIPRDVTELY---LDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMT 78
Query: 216 HLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
L L + YN + + + LK L L LH D++ +P G F
Sbjct: 79 QLLTLILSYN-------RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 202 ELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTL 261
L+ +P V L+ L +LY+G N +++ + N ++L LT L L + +L
Sbjct: 39 SLKSLPNGVFDELTSLTQLYLGGN-------KLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 262 PRGLF 266
P G+F
Sbjct: 92 PNGVF 96
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 159 DITVVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSHL 217
DIT L +I+ + S ++ LP + ++ LL L D ++E I + +
Sbjct: 47 DIT----LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTI 101
Query: 218 EELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFF--PKL 270
++LY+G+N+ + +N L LT L L D+++LPRG+F PKL
Sbjct: 102 QKLYMGFNAIRYLPPHV--FQNVPL-----LTVLVLERNDLSSLPRGIFHNTPKL 149
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 159 DITVVRDLKKLEILCLRGSNIKMLPIEVSELAR-LRLLGLRDCRELEVIPANVLSNLSHL 217
DIT L +I+ + S ++ LP + + R + LL L D ++E I + +
Sbjct: 41 DIT----LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTI 95
Query: 218 EELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFF--PKL 270
++LY+G+N+ + +N L LT L L D+++LPRG+F PKL
Sbjct: 96 QKLYMGFNAIRYLPPHV--FQNVPL-----LTVLVLERNDLSSLPRGIFHNTPKL 143
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 170 EILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK 229
+++C+R N++ +P +S RLL L + ++++I N +L HLE L + N
Sbjct: 47 KVICVR-KNLREVPDGIS--TNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
E+ + + L +L +LEL + T+P G F
Sbjct: 103 IEI-------GAFNGLANLNTLELFDNRLTTIPNGAF 132
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 20/89 (22%)
Query: 193 RLLGLR----DCRELEVIPANVLS---NLSHLEELYIGYNSFGKWEVEMEGVKNASLHEL 245
RL GL+ R L IPAN+L+ NLSHLE +E + + +L
Sbjct: 121 RLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLE-----------LRANIEEMPSHLFDDL 169
Query: 246 KHLTSLELHIKDVNTLPRGLF--FPKLQR 272
++L S+E + +PRG+F PKL++
Sbjct: 170 ENLESIEFGSNKLRQMPRGIFGKMPKLKQ 198
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 164 RDLKKLEILCLRGSNIKMLPIEVS-ELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI 222
+ +KKL + + +NI +P + L L L D ++ + A L L++L +L +
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHL----DGNKITKVDAASLKGLNNLAKLGL 223
Query: 223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGL 265
+NS + V N SL HL L L+ + +P GL
Sbjct: 224 SFNS-------ISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 164 RDLKKLEILCLRGSNIKMLPIEVS-ELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI 222
+ +KKL + + +NI +P + L L L D ++ + A L L++L +L +
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHL----DGNKITKVDAASLKGLNNLAKLGL 223
Query: 223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGL 265
+NS + V N SL HL L L+ + +P GL
Sbjct: 224 SFNS-------ISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVL 211
+N +++ R L LE+L L ++I+ + + + LA L L L D L VIP+
Sbjct: 85 NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGAF 143
Query: 212 SNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLEL-HIKDVNTLPRGLF 266
LS L EL++ N +E + + + + + L L+L +K + + G F
Sbjct: 144 EYLSKLRELWLRNN-------PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLS 212
D C+L + V L L L L + ++ LP+ L L +L + R L +P L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALR 121
Query: 213 NLSHLEELYIGYNSFGKW---------EVEMEGVKNASLHEL--------KHLTSLELHI 255
L L+ELY+ N ++E + N L EL ++L +L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 256 KDVNTLPRGLF 266
+ T+P+G F
Sbjct: 182 NSLYTIPKGFF 192
>pdb|3B7K|A Chain A, Human Acyl-Coenzyme A Thioesterase 12
pdb|3B7K|B Chain B, Human Acyl-Coenzyme A Thioesterase 12
pdb|3B7K|C Chain C, Human Acyl-Coenzyme A Thioesterase 12
Length = 333
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 408 VMSCVSNNTFVRLQ----RIEIKNC--------RVLEELIVVENQEERKNSIVIFPQLQY 455
V + + NNTF R+E +C R + ++ N + K +++ FP++Q
Sbjct: 263 VFTAIVNNTFQTCVEVGVRVEAFDCQEWAEGRGRHINSAFLIYNAADDKENLITFPRIQP 322
Query: 456 LKMDDLEKLRN 466
+ DD + R
Sbjct: 323 ISKDDFRRYRG 333
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 18/131 (13%)
Query: 153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLS 212
D C+L + V L L L L + ++ LP+ L L +L + R L +P L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALR 121
Query: 213 NLSHLEELYIGYNSFGKW---------EVEMEGVKNASLHEL--------KHLTSLELHI 255
L L+ELY+ N ++E + N +L EL ++L +L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 256 KDVNTLPRGLF 266
+ T+P+G F
Sbjct: 182 NSLYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLS 212
D C+L + V L L L L + ++ LP+ L L +L + R L +P L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALR 121
Query: 213 NLSHLEELYIGYNSFGKW---------EVEMEGVKNASLHEL--------KHLTSLELHI 255
L L+ELY+ N ++E + N L EL ++L +L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 256 KDVNTLPRGLF 266
+ T+P+G F
Sbjct: 182 NSLYTIPKGFF 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 18/131 (13%)
Query: 153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLS 212
D C+L + V L L L L + ++ LP+ L L +L + R L +P L
Sbjct: 64 DRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALR 122
Query: 213 NLSHLEELYIGYNSFGKW---------EVEMEGVKNASLHEL--------KHLTSLELHI 255
L L+ELY+ N ++E + N +L EL ++L +L L
Sbjct: 123 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 182
Query: 256 KDVNTLPRGLF 266
+ T+P+G F
Sbjct: 183 NSLYTIPKGFF 193
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLS 212
D C+L + V L L L L + ++ LP+ L L +L + R L +P L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALR 121
Query: 213 NLSHLEELYIGYNSFGKW---------EVEMEGVKNASLHEL--------KHLTSLELHI 255
L L+ELY+ N ++E + N L EL ++L +L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 256 KDVNTLPRGLF 266
+ T+P+G F
Sbjct: 182 NSLYTIPKGFF 192
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLS 212
D C+L + V L L L L + ++ LP+ L L +L + R L +P L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALR 121
Query: 213 NLSHLEELYIGYNSFGKW---------EVEMEGVKNASLHEL--------KHLTSLELHI 255
L L+ELY+ N ++E + N L EL ++L +L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQE 181
Query: 256 KDVNTLPRGLF 266
+ T+P+G F
Sbjct: 182 NSLYTIPKGFF 192
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 157 LLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSH 216
+LD++ R L L + LRG + EL L L G EL+ +P +L+
Sbjct: 104 VLDVSFNR-LTSLPLGALRG---------LGELQELYLKG----NELKTLPPGLLTPTPK 149
Query: 217 LEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
LE+L + N+ + + L+ L++L +L L + T+P+G F
Sbjct: 150 LEKLSLANNNLTELPAGL-------LNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLS 212
D C+L + V L L L L + ++ LP+ L L +L + R L +P L
Sbjct: 63 DRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALR 121
Query: 213 NLSHLEELYIGYNSFGKW---------EVEMEGVKNASLHEL--------KHLTSLELHI 255
L L+ELY+ N ++E + N L EL ++L +L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 256 KDVNTLPRGLF 266
+ T+P+G F
Sbjct: 182 NSLYTIPKGFF 192
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 157 LLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSH 216
+LD++ R L L + LRG + EL L L G EL+ +P +L+
Sbjct: 104 VLDVSFNR-LTSLPLGALRG---------LGELQELYLKG----NELKTLPPGLLTPTPK 149
Query: 217 LEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
LE+L + N+ + + L+ L++L +L L + T+P+G F
Sbjct: 150 LEKLSLANNNLTELPAGL-------LNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 202 ELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTL 261
+L+ +P V L+ L +L + N +++ + + +L LT L LH + +L
Sbjct: 39 KLQSLPHGVFDKLTQLTKLSLSQN-------QIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 262 PRGLF 266
P G+F
Sbjct: 92 PNGVF 96
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 157 LLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSH 216
+LD++ R L L + LRG + EL L L G EL+ +P +L+
Sbjct: 104 VLDVSFNR-LTSLPLGALRG---------LGELQELYLKG----NELKTLPPGLLTPTPK 149
Query: 217 LEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF 266
LE+L + N+ + + L+ L++L +L L + T+P+G F
Sbjct: 150 LEKLSLANNNLTELPAGL-------LNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1GXJ|A Chain A, Smc Hinge Domain From T. Maritima WO COILED COIL
pdb|1GXJ|B Chain B, Smc Hinge Domain From T. Maritima WO COILED COIL
pdb|1GXK|A Chain A, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|B Chain B, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|C Chain C, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|D Chain D, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
Length = 186
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 375 VNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEEL 434
V A+F EK P L ++ + I V+ + V+V+ + Q I ++N + +
Sbjct: 19 VRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGT------AQNIVVRNVDTAKAI 72
Query: 435 IVVENQEERKNSIVIFP----QLQYLKMDDLEKLRNFCTGDVDILEFPS 479
+ Q E + I P + ++ LE R F VD+++FPS
Sbjct: 73 VEFLKQNE-AGRVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKFPS 120
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 210 VLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPK 269
V +L +L++LY N ++ + +L LT L+L+ + ++PRG F
Sbjct: 52 VFDHLVNLQQLYFNSN-------KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAF--D 102
Query: 270 LQRYKIHIGGYYYAGVWRRELK 291
+ HI Y Y W E +
Sbjct: 103 NLKSLTHI--YLYNNPWDCECR 122
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 158 LDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLGLRDCRELEVIPANVLSNLSH 216
L+ V L +L L L + + LP+ V +L +L L L +L+ IP V NL
Sbjct: 55 LEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHI-NQLKSIPMGVFDNLKS 113
Query: 217 LEELYIGYNSFGKWEVEMEGV 237
L +Y+ N W+ E +
Sbjct: 114 LTHIYLFNN---PWDCECSDI 131
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 165 DLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGY 224
L L L L N+K +P ++ L RL L L R L++I L+ L +L++ +
Sbjct: 154 GLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNR-LDLIRPGSFQGLTSLRKLWLMH 211
Query: 225 NSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHI 277
++ ++ + +LK L L L ++ +LP LF P + ++H+
Sbjct: 212 -------AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
>pdb|1GXL|A Chain A, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|B Chain B, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|C Chain C, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|D Chain D, Smc Hinge Domain From T. Maritima With Coiled Coil
Length = 213
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 375 VNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEEL 434
V A+F EK P L ++ + I V+ + V+V+ + Q I ++N + +
Sbjct: 31 VRAVFEEKERFPGLVDVVSNLIEVDEKYSLAVSVLLGGT------AQNIVVRNVDTAKAI 84
Query: 435 IVVENQEERKNSIVIFP----QLQYLKMDDLEKLRNFCTGDVDILEFPS 479
+ Q E + I P + ++ LE R F VD+++FPS
Sbjct: 85 VEFLKQNE-AGRVTILPLDLIDGSFNRISGLENERGFVGYAVDLVKFPS 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,624,582
Number of Sequences: 62578
Number of extensions: 534585
Number of successful extensions: 1163
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 85
length of query: 505
length of database: 14,973,337
effective HSP length: 103
effective length of query: 402
effective length of database: 8,527,803
effective search space: 3428176806
effective search space used: 3428176806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)