Query 037920
Match_columns 505
No_of_seqs 252 out of 3494
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:44:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.5E-29 3.2E-34 281.3 24.2 399 10-494 470-909 (1153)
2 PLN00113 leucine-rich repeat r 99.9 2.1E-26 4.6E-31 255.8 20.5 384 70-488 90-509 (968)
3 PLN00113 leucine-rich repeat r 99.9 3.1E-26 6.7E-31 254.5 20.0 385 70-492 137-585 (968)
4 KOG4658 Apoptotic ATPase [Sign 99.9 2.6E-26 5.7E-31 243.0 14.5 192 2-199 450-651 (889)
5 KOG0444 Cytoskeletal regulator 99.9 2.6E-26 5.7E-31 221.7 -2.0 355 69-494 3-378 (1255)
6 KOG4194 Membrane glycoprotein 99.9 1.1E-24 2.5E-29 208.9 4.2 335 72-434 77-431 (873)
7 KOG0444 Cytoskeletal regulator 99.9 8.5E-26 1.8E-30 218.2 -5.6 320 70-465 52-376 (1255)
8 KOG4194 Membrane glycoprotein 99.9 6.8E-24 1.5E-28 203.6 6.3 365 71-494 50-431 (873)
9 PLN03210 Resistant to P. syrin 99.9 2.2E-21 4.7E-26 216.3 20.6 334 72-492 588-944 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 1.5E-24 3.2E-29 199.5 -9.0 379 74-489 46-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 3.1E-22 6.6E-27 184.4 -4.9 179 72-264 113-293 (565)
12 KOG0618 Serine/threonine phosp 99.8 8.5E-20 1.8E-24 184.6 -0.1 113 360-490 361-488 (1081)
13 KOG0618 Serine/threonine phosp 99.8 3E-20 6.6E-25 187.8 -3.6 227 191-464 242-489 (1081)
14 PRK15387 E3 ubiquitin-protein 99.7 1.8E-15 4E-20 157.7 16.3 256 73-429 201-456 (788)
15 KOG0617 Ras suppressor protein 99.6 3.1E-18 6.7E-23 140.3 -5.5 166 86-265 24-192 (264)
16 PRK15387 E3 ubiquitin-protein 99.6 3.9E-15 8.4E-20 155.3 15.3 148 97-276 203-350 (788)
17 PRK15370 E3 ubiquitin-protein 99.6 2.1E-15 4.4E-20 158.2 12.3 247 74-429 179-426 (754)
18 KOG0617 Ras suppressor protein 99.6 7.9E-18 1.7E-22 137.9 -5.8 164 62-231 22-189 (264)
19 PRK15370 E3 ubiquitin-protein 99.6 1.4E-14 3.1E-19 151.9 10.6 234 63-348 190-426 (754)
20 KOG4237 Extracellular matrix p 99.4 1.9E-14 4.2E-19 133.1 0.0 262 61-348 56-357 (498)
21 cd00116 LRR_RI Leucine-rich re 99.4 9.4E-14 2E-18 134.8 3.7 139 117-259 18-178 (319)
22 cd00116 LRR_RI Leucine-rich re 99.4 2.1E-13 4.6E-18 132.3 4.8 81 119-199 78-174 (319)
23 KOG4237 Extracellular matrix p 99.3 4.5E-14 9.7E-19 130.7 -3.8 142 81-227 54-200 (498)
24 KOG4658 Apoptotic ATPase [Sign 99.3 6.6E-12 1.4E-16 134.1 9.6 180 67-260 539-731 (889)
25 KOG0532 Leucine-rich repeat (L 99.3 4.8E-13 1.1E-17 129.5 -1.8 188 70-273 72-262 (722)
26 PF14580 LRR_9: Leucine-rich r 99.1 6.1E-11 1.3E-15 101.9 5.2 124 71-199 17-149 (175)
27 PF14580 LRR_9: Leucine-rich r 99.1 4.9E-11 1.1E-15 102.5 2.8 130 119-254 16-148 (175)
28 KOG0532 Leucine-rich repeat (L 99.0 8.8E-12 1.9E-16 120.9 -4.5 186 77-278 54-244 (722)
29 KOG4341 F-box protein containi 99.0 9.1E-12 2E-16 116.6 -4.5 286 146-491 139-439 (483)
30 KOG1259 Nischarin, modulator o 99.0 5.1E-11 1.1E-15 106.9 -0.3 182 70-263 211-416 (490)
31 KOG3207 Beta-tubulin folding c 99.0 9.5E-11 2.1E-15 110.4 0.8 118 302-460 215-335 (505)
32 KOG3207 Beta-tubulin folding c 98.9 3.3E-10 7.2E-15 106.8 1.2 157 93-259 119-284 (505)
33 COG4886 Leucine-rich repeat (L 98.9 2.1E-09 4.5E-14 107.5 5.3 188 77-278 97-287 (394)
34 COG4886 Leucine-rich repeat (L 98.9 2.4E-09 5.3E-14 107.0 5.6 173 73-260 116-291 (394)
35 KOG1259 Nischarin, modulator o 98.8 2.6E-10 5.7E-15 102.4 -1.5 127 94-228 283-412 (490)
36 KOG1909 Ran GTPase-activating 98.8 8.2E-10 1.8E-14 101.4 0.8 242 70-348 27-309 (382)
37 KOG4341 F-box protein containi 98.7 3.4E-10 7.3E-15 106.2 -5.7 307 123-487 139-461 (483)
38 KOG2120 SCF ubiquitin ligase, 98.5 6.1E-09 1.3E-13 93.7 -3.0 67 302-396 306-373 (419)
39 KOG1909 Ran GTPase-activating 98.5 2.9E-08 6.3E-13 91.5 0.5 183 71-259 90-311 (382)
40 KOG2120 SCF ubiquitin ligase, 98.5 5.1E-09 1.1E-13 94.2 -4.7 41 414-462 334-374 (419)
41 PLN03150 hypothetical protein; 98.4 5.8E-07 1.2E-11 94.5 8.5 104 146-257 419-526 (623)
42 PF13855 LRR_8: Leucine rich r 98.4 2.3E-07 5E-12 65.4 3.4 47 109-155 12-59 (61)
43 KOG0531 Protein phosphatase 1, 98.4 2.4E-08 5.2E-13 100.1 -2.5 187 72-275 71-262 (414)
44 KOG0531 Protein phosphatase 1, 98.4 3.1E-08 6.7E-13 99.4 -2.8 106 119-227 92-198 (414)
45 PF13855 LRR_8: Leucine rich r 98.3 5E-07 1.1E-11 63.6 3.9 58 122-179 1-61 (61)
46 PLN03150 hypothetical protein; 98.3 1.2E-06 2.7E-11 92.0 8.1 101 168-276 419-523 (623)
47 KOG2982 Uncharacterized conser 98.2 6.1E-07 1.3E-11 81.1 2.3 44 384-434 222-265 (418)
48 KOG1859 Leucine-rich repeat pr 98.2 1.6E-08 3.4E-13 101.4 -8.7 130 122-260 164-293 (1096)
49 KOG1644 U2-associated snRNP A' 98.2 4E-06 8.6E-11 71.8 6.7 100 74-176 43-149 (233)
50 PF12799 LRR_4: Leucine Rich r 98.1 3.3E-06 7.1E-11 54.5 3.8 37 123-159 2-38 (44)
51 KOG3665 ZYG-1-like serine/thre 98.1 1.7E-06 3.8E-11 90.7 3.4 136 121-259 121-263 (699)
52 KOG3665 ZYG-1-like serine/thre 98.1 1.2E-06 2.6E-11 92.0 1.9 125 72-199 121-259 (699)
53 KOG2982 Uncharacterized conser 98.1 1.6E-06 3.4E-11 78.5 2.1 198 212-469 68-267 (418)
54 PRK15386 type III secretion pr 97.9 4.2E-05 9.1E-10 74.3 8.8 32 309-347 156-187 (426)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.5E-10 51.3 4.1 37 146-182 2-39 (44)
56 PRK15386 type III secretion pr 97.9 5.2E-05 1.1E-09 73.6 8.2 133 71-226 50-188 (426)
57 KOG1644 U2-associated snRNP A' 97.9 2.9E-05 6.4E-10 66.6 5.7 103 147-254 44-148 (233)
58 COG5238 RNA1 Ran GTPase-activa 97.7 2.9E-05 6.4E-10 69.5 4.2 39 308-348 213-253 (388)
59 KOG4579 Leucine-rich repeat (L 97.6 4.6E-06 9.9E-11 66.8 -2.8 108 73-183 27-139 (177)
60 KOG1859 Leucine-rich repeat pr 97.6 1.5E-06 3.2E-11 87.7 -7.2 106 119-227 184-291 (1096)
61 KOG4579 Leucine-rich repeat (L 97.3 3.1E-05 6.8E-10 62.1 -1.4 88 119-207 50-139 (177)
62 COG5238 RNA1 Ran GTPase-activa 97.2 0.00024 5.3E-09 63.8 3.3 185 71-258 28-254 (388)
63 KOG1947 Leucine rich repeat pr 97.1 0.00012 2.6E-09 75.4 0.5 41 453-494 403-443 (482)
64 KOG2123 Uncharacterized conser 96.9 4.7E-05 1E-09 68.5 -3.9 98 123-221 20-123 (388)
65 KOG2739 Leucine-rich acidic nu 96.9 0.00035 7.5E-09 62.7 0.9 103 120-223 41-151 (260)
66 KOG2739 Leucine-rich acidic nu 96.7 0.00066 1.4E-08 61.0 1.3 81 119-199 62-152 (260)
67 KOG2123 Uncharacterized conser 96.6 7.2E-05 1.5E-09 67.4 -5.1 105 144-252 18-123 (388)
68 KOG1947 Leucine rich repeat pr 96.2 0.0011 2.4E-08 68.2 -0.6 95 385-494 268-367 (482)
69 PF13306 LRR_5: Leucine rich r 96.0 0.022 4.8E-07 46.6 6.8 104 114-223 4-111 (129)
70 KOG3864 Uncharacterized conser 96.0 0.00086 1.9E-08 57.8 -2.1 68 384-466 123-191 (221)
71 PF13306 LRR_5: Leucine rich r 95.9 0.025 5.4E-07 46.3 6.7 115 93-217 10-128 (129)
72 PF00560 LRR_1: Leucine Rich R 95.6 0.006 1.3E-07 32.6 1.0 21 123-143 1-21 (22)
73 PF00560 LRR_1: Leucine Rich R 95.3 0.0065 1.4E-07 32.5 0.6 21 168-188 1-21 (22)
74 KOG3864 Uncharacterized conser 94.5 0.0058 1.3E-07 52.9 -1.4 69 414-491 121-189 (221)
75 PF13504 LRR_7: Leucine rich r 93.7 0.046 9.9E-07 27.1 1.4 16 168-183 2-17 (17)
76 PF13504 LRR_7: Leucine rich r 93.4 0.053 1.1E-06 26.8 1.3 16 123-138 2-17 (17)
77 smart00369 LRR_TYP Leucine-ric 88.8 0.41 9E-06 26.5 2.1 21 166-186 1-21 (26)
78 smart00370 LRR Leucine-rich re 88.8 0.41 9E-06 26.5 2.1 21 166-186 1-21 (26)
79 smart00367 LRR_CC Leucine-rich 87.1 0.34 7.3E-06 27.0 1.1 17 477-493 1-17 (26)
80 KOG0473 Leucine-rich repeat pr 86.3 0.018 3.9E-07 50.9 -6.6 60 119-178 62-122 (326)
81 KOG0473 Leucine-rich repeat pr 79.5 0.059 1.3E-06 47.8 -6.1 83 119-201 39-122 (326)
82 KOG4308 LRR-containing protein 73.7 0.029 6.2E-07 56.9 -11.2 34 147-180 89-128 (478)
83 smart00364 LRR_BAC Leucine-ric 71.4 2.7 5.8E-05 23.4 1.2 18 167-184 2-19 (26)
84 PF13516 LRR_6: Leucine Rich r 62.2 4 8.8E-05 21.9 0.8 14 167-180 2-15 (24)
85 smart00365 LRR_SD22 Leucine-ri 61.9 6.9 0.00015 21.8 1.7 17 166-182 1-17 (26)
86 KOG3763 mRNA export factor TAP 55.5 3.5 7.6E-05 41.7 -0.3 38 308-347 217-254 (585)
87 COG3432 Predicted transcriptio 52.8 34 0.00075 26.0 4.6 42 5-46 45-86 (95)
88 KOG4308 LRR-containing protein 51.8 0.27 5.9E-06 49.9 -8.9 132 122-258 144-302 (478)
89 KOG3763 mRNA export factor TAP 46.8 7 0.00015 39.7 0.3 51 297-349 232-282 (585)
90 smart00368 LRR_RI Leucine rich 43.8 14 0.0003 20.8 1.1 13 146-158 3-15 (28)
91 PF14162 YozD: YozD-like prote 24.0 77 0.0017 20.8 2.1 22 3-24 9-30 (57)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=1.5e-29 Score=281.33 Aligned_cols=399 Identities=18% Similarity=0.250 Sum_probs=244.1
Q ss_pred HHHHHHhhccccccccccccCcEEeehhhHHHHHHHHhccc------ceEEEeccccc------cCCC------------
Q 037920 10 ALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQ------NVFSATNEQVE------GYRE------------ 65 (505)
Q Consensus 10 ~~~~~Li~~~l~~~~~~~~~~~~~mHdli~dla~~~~~~e~------~~~~~~~~~~~------~~~~------------ 65 (505)
.-++.|+++||++... +.++|||++|+||+++++++. .++....+..+ +-+.
T Consensus 470 ~~l~~L~~ksLi~~~~----~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE----DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred hChHHHHhcCCEEEcC----CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 3488999999998764 579999999999999998763 11111100000 0000
Q ss_pred -----CCcccccCCCcEEEecCCCCc-------cCCCCC-C-CCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeC
Q 037920 66 -----WSDESAIKLYTSIVLHDIRTN-------LLPEVV-E-SPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTN 131 (505)
Q Consensus 66 -----~~~~~~~~~l~~l~l~~~~~~-------~l~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 131 (505)
......+++++.|.+..+... .+|... . ..+|+.|.+ .......+|..+ .+.+|+.|++++
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~---~~~~l~~lP~~f--~~~~L~~L~L~~ 620 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRW---DKYPLRCMPSNF--RPENLVKLQMQG 620 (1153)
T ss_pred eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEe---cCCCCCCCCCcC--CccCCcEEECcC
Confidence 011234556666666443221 122222 2 245777777 445566666654 467888888888
Q ss_pred CcCccCcccccCCCCCCeeEeeccC-CCCcccccCCCCCcEEEccCC-CCcccchhhhCCCCCCEEeeeCCCCCCccChh
Q 037920 132 INLMSLPSSLGLLSNLRTLSLDNCK-LLDITVVRDLKKLEILCLRGS-NIKMLPIEVSELARLRLLGLRDCRELEVIPAN 209 (505)
Q Consensus 132 ~~~~~l~~~l~~l~~L~~L~L~~~~-l~~~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 209 (505)
+.+..++..+..+++|++|+++++. +..++.++.+++|++|++++| .+..+|..+.++++|+.|++++|+.++.+|..
T Consensus 621 s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 8888888778888888888888776 444566778888888888887 56778888888888888888888888888875
Q ss_pred hhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccce
Q 037920 210 VLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRE 289 (505)
Q Consensus 210 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~ 289 (505)
..+++|+.|++++|.. .+.+|. ...+|+.|+++++.+..+|..+.+++|+.|.+......
T Consensus 701 --i~l~sL~~L~Lsgc~~-------L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~-------- 760 (1153)
T PLN03210 701 --INLKSLYRLNLSGCSR-------LKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE-------- 760 (1153)
T ss_pred --CCCCCCCEEeCCCCCC-------cccccc---ccCCcCeeecCCCccccccccccccccccccccccchh--------
Confidence 2788888888887754 223332 23568888888888888887776777777776421100
Q ss_pred EEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhh
Q 037920 290 LKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEI 369 (505)
Q Consensus 290 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~ 369 (505)
.+. .............+++|+.|++++| .....+|..+ ..+++|+.|++++|..+.. +
T Consensus 761 -~l~-~~~~~l~~~~~~~~~sL~~L~Ls~n--~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~-----L----------- 818 (1153)
T PLN03210 761 -KLW-ERVQPLTPLMTMLSPSLTRLFLSDI--PSLVELPSSI--QNLHKLEHLEIENCINLET-----L----------- 818 (1153)
T ss_pred -hcc-ccccccchhhhhccccchheeCCCC--CCccccChhh--hCCCCCCEEECCCCCCcCe-----e-----------
Confidence 000 0001111112223578999999998 7778888888 7899999999999873210 0
Q ss_pred hhhcccccccccccccccccccccccc-ccccccccceeeccCccccccccccEEEEccccccccceecccccccccccc
Q 037920 370 ILKVNVNALFVEKVTLPKLENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIV 448 (505)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~ 448 (505)
+....+++|+.|++++| .+..++ ...++|++|+++++. ++.+ +.. ..
T Consensus 819 ----------P~~~~L~sL~~L~Ls~c~~L~~~p------------~~~~nL~~L~Ls~n~-i~~i--P~s-------i~ 866 (1153)
T PLN03210 819 ----------PTGINLESLESLDLSGCSRLRTFP------------DISTNISDLNLSRTG-IEEV--PWW-------IE 866 (1153)
T ss_pred ----------CCCCCccccCEEECCCCCcccccc------------ccccccCEeECCCCC-CccC--hHH-------Hh
Confidence 11113555566666655 444432 112445555555443 4433 221 12
Q ss_pred cccccccccccCcccccccccCCcccccCCCccceecccCccceee
Q 037920 449 IFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMR 494 (505)
Q Consensus 449 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~~ 494 (505)
.+++|+.|++.+|+++++++. ....++.|+.+++++|++|+.+
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~---~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSL---NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCc---ccccccCCCeeecCCCcccccc
Confidence 345555555555555555433 2444555555555555555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=2.1e-26 Score=255.75 Aligned_cols=384 Identities=17% Similarity=0.189 Sum_probs=204.5
Q ss_pred cccCCCcEEEecCCCCc-cCCCC-C-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc-CcccccCCC
Q 037920 70 SAIKLYTSIVLHDIRTN-LLPEV-V-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS-LPSSLGLLS 145 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~-~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~ 145 (505)
..+++++.|++++|.+. .+|.. . .+++|+.|++ +++...+.+|. ..+++|++|++++|.+.. +|..++.++
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~L--s~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL--SNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEEC--cCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCC
Confidence 45677888888887774 45543 2 6777777777 44444444543 346677777777777653 666677777
Q ss_pred CCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCc-ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEe
Q 037920 146 NLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIK-MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI 222 (505)
Q Consensus 146 ~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 222 (505)
+|++|++++|.+.. |..++++++|++|++++|++. .+|..++++++|++|++++|...+.+|.. ++.+++|++|++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 243 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL 243 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC
Confidence 77777777776654 566677777777777777655 45666777777777777765544556655 667777777777
Q ss_pred eCCCCCCchhhhhccccccccCCCCcCEEEeecccCC-CCCCCCC-CCCCcEEEEEEcceeeccc-------ccceEEec
Q 037920 223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN-TLPRGLF-FPKLQRYKIHIGGYYYAGV-------WRRELKIC 293 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~~-~~~L~~L~~~~~~~~~~~~-------~~~~l~l~ 293 (505)
++|.+ .+..|..+.++++|+.|+++.|.+. .+|..+. +++|+.|+++.+....... ....+.+.
T Consensus 244 ~~n~l-------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 244 VYNNL-------TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred cCcee-------ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 76665 3455566666666666666666654 3444443 5666666654332110000 00002222
Q ss_pred CCCCc-cchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCC--Ccccccccc-chhcchhhhh
Q 037920 294 PDSKI-RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPN--PAESKRREE-STDVMQSHEI 369 (505)
Q Consensus 294 ~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~--~~~~l~~L~-l~~l~~~~~~ 369 (505)
.+... ..+..+ ..+++|+.|++++| .....+|..+ ..+++|+.|++++|.-. ....+..+. ++.+.+..+.
T Consensus 317 ~n~~~~~~~~~~-~~l~~L~~L~L~~n--~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 317 SNNFTGKIPVAL-TSLPRLQVLQLWSN--KFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred CCccCCcCChhH-hcCCCCCEEECcCC--CCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 21111 112222 23566777777666 4444556555 55666777777666511 011111111 2223333333
Q ss_pred hhhccccccccccccccccccccccccccccccccce---------eeccC-------ccccccccccEEEEcccccccc
Q 037920 370 ILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHV---------AVMSC-------VSNNTFVRLQRIEIKNCRVLEE 433 (505)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---------~v~~c-------~~l~~l~~L~~L~l~~c~~l~~ 433 (505)
+.+... .....+++|+.|++++|++....+..+ .++.+ .....+++|++|++++|.....
T Consensus 392 l~~~~p----~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 392 LEGEIP----KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred ecccCC----HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence 322110 111234555555555554432211000 00000 0023455666666666553322
Q ss_pred ceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecccC
Q 037920 434 LIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRC 488 (505)
Q Consensus 434 i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C 488 (505)
+ +. ....++|+.|++++|.--..++ ..+..+++|+.|++++|
T Consensus 468 ~--p~--------~~~~~~L~~L~ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 468 L--PD--------SFGSKRLENLDLSRNQFSGAVP---RKLGSLSELMQLKLSEN 509 (968)
T ss_pred c--Cc--------ccccccceEEECcCCccCCccC---hhhhhhhccCEEECcCC
Confidence 2 11 1123677777777776433332 24667888898988887
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=3.1e-26 Score=254.47 Aligned_cols=385 Identities=17% Similarity=0.177 Sum_probs=216.1
Q ss_pred cccCCCcEEEecCCCCc-cCCCC-CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc-CcccccCCCC
Q 037920 70 SAIKLYTSIVLHDIRTN-LLPEV-VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS-LPSSLGLLSN 146 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~-~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~~ 146 (505)
..++++++|++++|.+. .+|.. ..+++|++|++ .++.....+|.. +.++++|++|++++|.+.. +|..++++++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L--~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 213 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL--GGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKS 213 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEEC--ccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence 35678888999888884 44543 37888888888 444444556655 4778888888888888765 6777888888
Q ss_pred CCeeEeeccCCCC--cccccCCCCCcEEEccCCCCc-ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEee
Q 037920 147 LRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIK-MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG 223 (505)
Q Consensus 147 L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 223 (505)
|++|++++|.+.. |..++++++|++|++++|+++ .+|..++++++|+.|++++|...+.+|.. +..+++|++|+++
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls 292 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLS 292 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECc
Confidence 8888888888765 677788888888888888765 45777778888888888775554556655 6777777777777
Q ss_pred CCCCCCchhhhhccccccccCCCCcCEEEeecccCC-CCCCCCC-CCCCcEEEEEEcceee-------------------
Q 037920 224 YNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN-TLPRGLF-FPKLQRYKIHIGGYYY------------------- 282 (505)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~~-~~~L~~L~~~~~~~~~------------------- 282 (505)
+|.+ .+.+|..+..+++|+.|++++|.+. .+|..+. +++|+.|++..+....
T Consensus 293 ~n~l-------~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 293 DNSL-------SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred CCee-------ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence 7765 3344444555555555555555443 2333222 4444444443221110
Q ss_pred ---ccccc---------ceEEecCCCCc-cchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCC
Q 037920 283 ---AGVWR---------RELKICPDSKI-RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPP 349 (505)
Q Consensus 283 ---~~~~~---------~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 349 (505)
.+..+ ..+.+..+.-. ..+..+. .+++|+.|++.+| .....+|..+ ..+++|+.|++++|.-
T Consensus 366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~L~~L~L~~n--~l~~~~p~~~--~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-ACRSLRRVRLQDN--SFSGELPSEF--TKLPLVYFLDISNNNL 440 (968)
T ss_pred CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh-CCCCCCEEECcCC--EeeeECChhH--hcCCCCCEEECcCCcc
Confidence 00000 00111111100 1112222 2456666666665 3333444444 4555666666655541
Q ss_pred CC-----ccccccccchhcchhhhhhhhccccc-------------------cccccccccccccccccccccccccccc
Q 037920 350 NP-----AESKRREESTDVMQSHEIILKVNVNA-------------------LFVEKVTLPKLENLELDSINVERIWQSH 405 (505)
Q Consensus 350 ~~-----~~~l~~L~l~~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 405 (505)
.. ...+++ ++.+.+..+.+.+..... .......+++|+.|++++|++....+.
T Consensus 441 ~~~~~~~~~~l~~--L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~- 517 (968)
T PLN00113 441 QGRINSRKWDMPS--LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD- 517 (968)
T ss_pred cCccChhhccCCC--CcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCCh-
Confidence 10 011111 122233333222211000 000111344445555555433322110
Q ss_pred eeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceec
Q 037920 406 VAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELII 485 (505)
Q Consensus 406 ~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i 485 (505)
.+..+++|++|++++|.....+ +.. ...+++|+.|++++|.-...++. .+..+++|+.|++
T Consensus 518 -------~~~~l~~L~~L~Ls~N~l~~~~--p~~-------~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~l~l 578 (968)
T PLN00113 518 -------ELSSCKKLVSLDLSHNQLSGQI--PAS-------FSEMPVLSQLDLSQNQLSGEIPK---NLGNVESLVQVNI 578 (968)
T ss_pred -------HHcCccCCCEEECCCCcccccC--Chh-------HhCcccCCEEECCCCcccccCCh---hHhcCcccCEEec
Confidence 0455677777777777632222 221 23568899999998886555443 5777899999999
Q ss_pred ccCccce
Q 037920 486 NRCPEFL 492 (505)
Q Consensus 486 ~~C~~L~ 492 (505)
++|+-..
T Consensus 579 s~N~l~~ 585 (968)
T PLN00113 579 SHNHLHG 585 (968)
T ss_pred cCCccee
Confidence 9986443
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.94 E-value=2.6e-26 Score=243.02 Aligned_cols=192 Identities=29% Similarity=0.427 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHHhhccccccccc-cccCcEEeehhhHHHHHHHHh-----cccceEEEeccccccCCCCCcccccCCC
Q 037920 2 EVARARVHALVHKLKASCMLLNHIS-QKKELFSMHDVVRDVAILIAS-----TEQNVFSATNEQVEGYREWSDESAIKLY 75 (505)
Q Consensus 2 ~~~~~~~~~~~~~Li~~~l~~~~~~-~~~~~~~mHdli~dla~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~~l 75 (505)
+.|+++|.+|+++|++++|++...+ ++..+|+|||+|||+|.++++ +|..+ +..+. +....+....+..+
T Consensus 450 ~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i--v~~~~--~~~~~~~~~~~~~~ 525 (889)
T KOG4658|consen 450 ETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQI--VSDGV--GLSEIPQVKSWNSV 525 (889)
T ss_pred cchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceE--EECCc--Cccccccccchhhe
Confidence 3578999999999999999999874 346899999999999999999 66533 23222 34556677778899
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCC-CccccChhHHhCCCCccEEEEeCCc-CccCcccccCCCCCCeeEee
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQES-SSLTIPNKFFERMMQVRVINLTNIN-LMSLPSSLGLLSNLRTLSLD 153 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~~l~~l~~L~~L~L~ 153 (505)
|++++.++.+..++....+++|++|.+ ..+. ....++..+|..++.|++||+++|. +.++|.+++.|.+||||+++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll--~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLL--QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEE--eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 999999999999988888899999999 4444 3778888889999999999999765 66788888888888888888
Q ss_pred ccCCCC-cccccCCCCCcEEEccCCC-CcccchhhhCCCCCCEEeeeC
Q 037920 154 NCKLLD-ITVVRDLKKLEILCLRGSN-IKMLPIEVSELARLRLLGLRD 199 (505)
Q Consensus 154 ~~~l~~-~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~ 199 (505)
++.+.. |.++++++.|.+|++..+. +...|.....+++||+|.+..
T Consensus 604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 877777 7777777777777777663 334444444567777776655
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=2.6e-26 Score=221.66 Aligned_cols=355 Identities=20% Similarity=0.257 Sum_probs=272.9
Q ss_pred ccccCCCcEEEecCCCC--ccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCC
Q 037920 69 ESAIKLYTSIVLHDIRT--NLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLS 145 (505)
Q Consensus 69 ~~~~~~l~~l~l~~~~~--~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~ 145 (505)
...++-+|.+++++|.+ ..+|... .++.++.|.+ +......+|+.+ +.+.+|+.|.+.+|.+.++...++.++
T Consensus 3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkL---nrt~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp 78 (1255)
T KOG0444|consen 3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKL---NRTKLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLP 78 (1255)
T ss_pred ccccceeecccccCCcCCCCcCchhHHHhhheeEEEe---chhhhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccch
Confidence 34677789999999999 5677665 8999999999 777888999986 899999999999999999888999999
Q ss_pred CCCeeEeeccCCCC---cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEe
Q 037920 146 NLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI 222 (505)
Q Consensus 146 ~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 222 (505)
.||.+.+..|.+.. |..|.++..|.+||++.|+++.+|..+...+++-.|++++ +.+..+|...+-+++.|-.|++
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcc
Confidence 99999999999766 7999999999999999999999999999999999999999 7889999887889999999999
Q ss_pred eCCCCCCchhhhhccccccccCCCCcCEEEeecccCC-----CCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCC
Q 037920 223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN-----TLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSK 297 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~ 297 (505)
++|.+. .+|..+..+.+|++|.+++|.+. .+|+ +++|+.|.++...- ..
T Consensus 158 S~NrLe--------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs---mtsL~vLhms~TqR---------------Tl 211 (1255)
T KOG0444|consen 158 SNNRLE--------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS---MTSLSVLHMSNTQR---------------TL 211 (1255)
T ss_pred ccchhh--------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc---chhhhhhhcccccc---------------hh
Confidence 999874 45667888999999999998764 3443 55666655542211 11
Q ss_pred ccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcccccccc--------chhcchhhhh
Q 037920 298 IRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREE--------STDVMQSHEI 369 (505)
Q Consensus 298 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~--------l~~l~~~~~~ 369 (505)
..++.++.. +.+|..++++.| .+..+|..+ -.+++|+.|++++|. +.+|. +..+.+++|.
T Consensus 212 ~N~Ptsld~-l~NL~dvDlS~N---~Lp~vPecl--y~l~~LrrLNLS~N~------iteL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 212 DNIPTSLDD-LHNLRDVDLSEN---NLPIVPECL--YKLRNLRRLNLSGNK------ITELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hcCCCchhh-hhhhhhcccccc---CCCcchHHH--hhhhhhheeccCcCc------eeeeeccHHHHhhhhhhccccch
Confidence 122333433 788999999987 778888888 678999999999987 22222 2233333333
Q ss_pred hhhcccccccccccccccccccccccc--ccccccccceeeccCccccccccccEEEEccccccccceeccccccccccc
Q 037920 370 ILKVNVNALFVEKVTLPKLENLELDSI--NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSI 447 (505)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~L~~L~l~~~--~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~ 447 (505)
+.... ...-.+++|++|...+| .++.+|.| ++.+.+|+++...++. ++-+ ++++.
T Consensus 280 Lt~LP-----~avcKL~kL~kLy~n~NkL~FeGiPSG---------IGKL~~Levf~aanN~-LElV--PEglc------ 336 (1255)
T KOG0444|consen 280 LTVLP-----DAVCKLTKLTKLYANNNKLTFEGIPSG---------IGKLIQLEVFHAANNK-LELV--PEGLC------ 336 (1255)
T ss_pred hccch-----HHHhhhHHHHHHHhccCcccccCCccc---------hhhhhhhHHHHhhccc-cccC--chhhh------
Confidence 33211 11124677788877777 45566655 7788888888777664 6555 55543
Q ss_pred ccccccccccccCcccccccccCCcccccCCCccceecccCccceee
Q 037920 448 VIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMR 494 (505)
Q Consensus 448 ~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~~ 494 (505)
-|++|+.|.+.+.. |.. +|++++-+|.|+.|+++.-|+|..=
T Consensus 337 -RC~kL~kL~L~~Nr-LiT---LPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 337 -RCVKLQKLKLDHNR-LIT---LPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred -hhHHHHHhcccccc-eee---chhhhhhcCCcceeeccCCcCccCC
Confidence 46899999987766 333 5667889999999999999988654
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-24 Score=208.92 Aligned_cols=335 Identities=16% Similarity=0.181 Sum_probs=169.6
Q ss_pred cCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCC
Q 037920 72 IKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLR 148 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~ 148 (505)
++..+.|++++|++..+... .++++|+.+.+ ..+....+|... ....+|+.|++.+|.|+++. +++.-++.||
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l---~~N~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNL---NKNELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeee---ccchhhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 44566677777776544332 36666776666 555555665521 22334666666666555532 3455555556
Q ss_pred eeEeeccCCCC-c-ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCC
Q 037920 149 TLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225 (505)
Q Consensus 149 ~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 225 (505)
.|+|+.|.|+. + +++..-.++++|++++|+|+.+ ...|..+.+|-.|.++. +.++.+|...+.++++|+.|++..|
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccc
Confidence 66665555555 2 4444445555555555555544 23445555555555555 4555555544555555555555555
Q ss_pred CCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC--CCCCcEEEEEEcc-------eeecccccceE--EecC
Q 037920 226 SFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIHIGG-------YYYAGVWRREL--KICP 294 (505)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~~~~~~-------~~~~~~~~~~l--~l~~ 294 (505)
.+... ..-.|..+++|+.|.+..|++..+..+.+ +.++++|++..++ |-+.-.....| +.+.
T Consensus 232 ~iriv-------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 232 RIRIV-------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred ceeee-------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 44211 11234455555555555555554444443 5555555544321 10000000000 0000
Q ss_pred CCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCC--CCcccccccc-chhcchhhhhhh
Q 037920 295 DSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPP--NPAESKRREE-STDVMQSHEIIL 371 (505)
Q Consensus 295 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~--~~~~~l~~L~-l~~l~~~~~~~~ 371 (505)
-..++...| ...++|+.|+|++| .+..+++.-. ..+..|+.|.++.|.. +....|..++ +..+++..|.+.
T Consensus 305 I~rih~d~W--sftqkL~~LdLs~N---~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 305 IQRIHIDSW--SFTQKLKELDLSSN---RITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred hheeecchh--hhcccceeEecccc---ccccCChhHH-HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 111111111 22466666666665 3334333221 4456666666666651 1112222222 345666666666
Q ss_pred hccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccc
Q 037920 372 KVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEEL 434 (505)
Q Consensus 372 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i 434 (505)
++....-. ...++|+|++|.+.+|+++.++... +..+++|++|++.+++ |..|
T Consensus 379 ~~IEDaa~-~f~gl~~LrkL~l~gNqlk~I~krA--------fsgl~~LE~LdL~~Na-iaSI 431 (873)
T KOG4194|consen 379 WCIEDAAV-AFNGLPSLRKLRLTGNQLKSIPKRA--------FSGLEALEHLDLGDNA-IASI 431 (873)
T ss_pred EEEecchh-hhccchhhhheeecCceeeecchhh--------hccCcccceecCCCCc-ceee
Confidence 65333221 1234788888888888877775432 5677888888888777 5445
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=8.5e-26 Score=218.17 Aligned_cols=320 Identities=19% Similarity=0.282 Sum_probs=249.7
Q ss_pred cccCCCcEEEecCCCCccCCCC-CCCCCccEEEeeecCCCC-ccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCC
Q 037920 70 SAIKLYTSIVLHDIRTNLLPEV-VESPQLKLLFICADQESS-SLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNL 147 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L 147 (505)
..+++++||++.+|++.++... ..++.||++.+ ..++. ...+|.++| ++.-|++||++.|++++.|..+.+.+++
T Consensus 52 ~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~--R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV--RDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNS 128 (1255)
T ss_pred HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh--hccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCc
Confidence 5688999999999999777654 49999999999 44443 456899987 7999999999999999999999999999
Q ss_pred CeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCC
Q 037920 148 RTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225 (505)
Q Consensus 148 ~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 225 (505)
-.|+|++|.|.. | +.+-++.-|-+||+++|++..+|+.+..+..|++|.+++|. +..+.-..+..+++|++|.++++
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccc
Confidence 999999999999 6 55668999999999999999999999999999999999954 33333222566778899999977
Q ss_pred CCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC-CCCCcEEEEEEcceeecccccceEEecCCCCccchhhH
Q 037920 226 SFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF-FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGL 304 (505)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 304 (505)
..+ ...+|.++..+.+|+.++++.|.+..+|.-.. +.+|+.|+++.+. +.....-
T Consensus 208 qRT------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~------------------iteL~~~ 263 (1255)
T KOG0444|consen 208 QRT------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK------------------ITELNMT 263 (1255)
T ss_pred cch------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc------------------eeeeecc
Confidence 654 45678899999999999999999999998776 8899998886432 1111111
Q ss_pred HHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccc
Q 037920 305 IVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVT 384 (505)
Q Consensus 305 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~ 384 (505)
...-.+|+.|+++.| .+..+|..+ ..+++|+.|.+.+|. + .+..+....+.
T Consensus 264 ~~~W~~lEtLNlSrN---QLt~LP~av--cKL~kL~kLy~n~Nk-L-----------------------~FeGiPSGIGK 314 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRN---QLTVLPDAV--CKLTKLTKLYANNNK-L-----------------------TFEGIPSGIGK 314 (1255)
T ss_pred HHHHhhhhhhccccc---hhccchHHH--hhhHHHHHHHhccCc-c-----------------------cccCCccchhh
Confidence 122468899999997 788899988 779999999988876 1 11223333356
Q ss_pred ccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccc
Q 037920 385 LPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKL 464 (505)
Q Consensus 385 ~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 464 (505)
+..|+.+...+|+++-+|.+ +..++.|+.|.+..+..++ + ++++ ..+|.|+.|++++.|+|
T Consensus 315 L~~Levf~aanN~LElVPEg---------lcRC~kL~kL~L~~NrLiT-L--PeaI-------HlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 315 LIQLEVFHAANNKLELVPEG---------LCRCVKLQKLKLDHNRLIT-L--PEAI-------HLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhHHHHhhccccccCchh---------hhhhHHHHHhcccccceee-c--hhhh-------hhcCCcceeeccCCcCc
Confidence 77788888888877777665 6677888888887776444 3 4433 34588888888888887
Q ss_pred c
Q 037920 465 R 465 (505)
Q Consensus 465 ~ 465 (505)
.
T Consensus 376 V 376 (1255)
T KOG0444|consen 376 V 376 (1255)
T ss_pred c
Confidence 5
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=6.8e-24 Score=203.64 Aligned_cols=365 Identities=17% Similarity=0.193 Sum_probs=242.0
Q ss_pred ccCCCcEEEecCCCCccCCC----CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCC
Q 037920 71 AIKLYTSIVLHDIRTNLLPE----VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSN 146 (505)
Q Consensus 71 ~~~~l~~l~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~ 146 (505)
..-..+.++.+++.+..+.. ..-.+..++|++ .++.+..+...+|.++++|+.+++.+|.++.+|.......|
T Consensus 50 c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~Ldl---snNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sgh 126 (873)
T KOG4194|consen 50 CPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDL---SNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGH 126 (873)
T ss_pred CCCCceeeecCccccccccccccCCcCccceeeeec---cccccccCcHHHHhcCCcceeeeeccchhhhcccccccccc
Confidence 34456778888888766522 124567788999 88888888888889999999999999999999998888889
Q ss_pred CCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEee
Q 037920 147 LRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG 223 (505)
Q Consensus 147 L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 223 (505)
|+.|+|.+|.|.+ -+.+.-++.|+.||++.|.|+.+|. .+.+-.++++|++++ +.++.+..+.+..+.+|-+|.++
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecc
Confidence 9999999999998 4888899999999999999998863 455668899999999 67777776668889999999999
Q ss_pred CCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCC--CCCCCcEEEEEEcceee--cccccc----e-EEecC
Q 037920 224 YNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGL--FFPKLQRYKIHIGGYYY--AGVWRR----E-LKICP 294 (505)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~~~~~~~~~--~~~~~~----~-l~l~~ 294 (505)
.|.++.++. ..|+++++|+.|++..|.+....... ++++|+.|.+..++..- +|.+.. . +.+..
T Consensus 206 rNrittLp~-------r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 206 RNRITTLPQ-------RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred cCcccccCH-------HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence 999977664 67888999999999999886442222 27888887775442110 111110 0 11111
Q ss_pred CCCccch-hhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhc
Q 037920 295 DSKIRLK-DGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKV 373 (505)
Q Consensus 295 ~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~ 373 (505)
+...... .|+.+ ++.|++|+++.| .....-++.. ...++|++|+++.|. +...
T Consensus 279 N~l~~vn~g~lfg-Lt~L~~L~lS~N--aI~rih~d~W--sftqkL~~LdLs~N~---------------------i~~l 332 (873)
T KOG4194|consen 279 NRLQAVNEGWLFG-LTSLEQLDLSYN--AIQRIHIDSW--SFTQKLKELDLSSNR---------------------ITRL 332 (873)
T ss_pred chhhhhhcccccc-cchhhhhccchh--hhheeecchh--hhcccceeEeccccc---------------------cccC
Confidence 1111111 11222 344444444444 1111111111 223444455444443 2211
Q ss_pred cccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceeccccccccccccccccc
Q 037920 374 NVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQL 453 (505)
Q Consensus 374 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L 453 (505)
... ....+..|+.|.++.|++..+-.+. +..+.+|++|+++.+. +.-.+ .++. .....+|+|
T Consensus 333 ~~~----sf~~L~~Le~LnLs~Nsi~~l~e~a--------f~~lssL~~LdLr~N~-ls~~I-EDaa----~~f~gl~~L 394 (873)
T KOG4194|consen 333 DEG----SFRVLSQLEELNLSHNSIDHLAEGA--------FVGLSSLHKLDLRSNE-LSWCI-EDAA----VAFNGLPSL 394 (873)
T ss_pred Chh----HHHHHHHhhhhcccccchHHHHhhH--------HHHhhhhhhhcCcCCe-EEEEE-ecch----hhhccchhh
Confidence 111 1124667777777777666653332 5667888888888776 33221 2211 113457899
Q ss_pred ccccccCcccccccccCCcccccCCCccceecccCccceee
Q 037920 454 QYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMR 494 (505)
Q Consensus 454 ~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~~ 494 (505)
+.|.+.+.. +++++.. ++..+++|+.|++.+- .+.+|
T Consensus 395 rkL~l~gNq-lk~I~kr--Afsgl~~LE~LdL~~N-aiaSI 431 (873)
T KOG4194|consen 395 RKLRLTGNQ-LKSIPKR--AFSGLEALEHLDLGDN-AIASI 431 (873)
T ss_pred hheeecCce-eeecchh--hhccCcccceecCCCC-cceee
Confidence 999998876 7777653 4667899999999886 34444
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=2.2e-21 Score=216.33 Aligned_cols=334 Identities=19% Similarity=0.264 Sum_probs=245.6
Q ss_pred cCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCc-CccCcccccCCCCCCee
Q 037920 72 IKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNIN-LMSLPSSLGLLSNLRTL 150 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~~l~~l~~L~~L 150 (505)
+.++|.|.+.++.+..+|......+|+.|++ .++.+..++..+ ..+++|+.|+++++. +..+| .++.+++|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L---~~s~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQM---QGSKLEKLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEEC---cCcccccccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEE
Confidence 4679999999999999999889999999999 556677777765 789999999999876 55576 48899999999
Q ss_pred EeeccC-CCC-cccccCCCCCcEEEccCC-CCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920 151 SLDNCK-LLD-ITVVRDLKKLEILCLRGS-NIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 151 ~L~~~~-l~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
++.+|. +.. |..++++++|+.|++++| .++.+|..+ ++++|+.|++++|..+..+|.. .++|++|++++|.+
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i 737 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAI 737 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcc
Confidence 999988 555 889999999999999997 688898766 7999999999999888877752 46899999999886
Q ss_pred CCchhhhhccccccccCCCCcCEEEeecccCCCCC-------CCC--CCCCCcEEEEEEcceeecccccceEEecCCCCc
Q 037920 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLP-------RGL--FFPKLQRYKIHIGGYYYAGVWRRELKICPDSKI 298 (505)
Q Consensus 228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-------~~~--~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~ 298 (505)
..+ |..+ .+++|+.|.+..+....+. ... .+++|+.|++..+. ...
T Consensus 738 ~~l--------P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~----------------~l~ 792 (1153)
T PLN03210 738 EEF--------PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP----------------SLV 792 (1153)
T ss_pred ccc--------cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCC----------------Ccc
Confidence 443 3333 5778888887754322221 111 14677777764221 112
Q ss_pred cchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccc
Q 037920 299 RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNAL 378 (505)
Q Consensus 299 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~ 378 (505)
..+.++.. +++|+.|++.+| ..+..+|..+ .+++|+.|++++|..+. .+
T Consensus 793 ~lP~si~~-L~~L~~L~Ls~C--~~L~~LP~~~---~L~sL~~L~Ls~c~~L~-------------------------~~ 841 (1153)
T PLN03210 793 ELPSSIQN-LHKLEHLEIENC--INLETLPTGI---NLESLESLDLSGCSRLR-------------------------TF 841 (1153)
T ss_pred ccChhhhC-CCCCCEEECCCC--CCcCeeCCCC---CccccCEEECCCCCccc-------------------------cc
Confidence 23444443 899999999999 7788888655 58999999999987321 00
Q ss_pred ccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccc
Q 037920 379 FVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKM 458 (505)
Q Consensus 379 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l 458 (505)
+ ...++|+.|+++++.++.++.. +..+++|++|++.+|+.++.+. .. ...+++|+.+++
T Consensus 842 -p--~~~~nL~~L~Ls~n~i~~iP~s---------i~~l~~L~~L~L~~C~~L~~l~--~~-------~~~L~~L~~L~l 900 (1153)
T PLN03210 842 -P--DISTNISDLNLSRTGIEEVPWW---------IEKFSNLSFLDMNGCNNLQRVS--LN-------ISKLKHLETVDF 900 (1153)
T ss_pred -c--ccccccCEeECCCCCCccChHH---------HhcCCCCCEEECCCCCCcCccC--cc-------cccccCCCeeec
Confidence 0 1246788888888888777543 6788899999999998888773 22 234588888888
Q ss_pred cCccccccccc--CCc--------ccccCCCccceecccCccce
Q 037920 459 DDLEKLRNFCT--GDV--------DILEFPSLKELIINRCPEFL 492 (505)
Q Consensus 459 ~~~~~L~~~~~--~~~--------~~~~~~~L~~L~i~~C~~L~ 492 (505)
.+|++|..+.. .|. ....+|+...+...+|.+|.
T Consensus 901 ~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 901 SDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred CCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 88888865432 010 01234555666777887765
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.5e-24 Score=199.54 Aligned_cols=379 Identities=21% Similarity=0.249 Sum_probs=250.3
Q ss_pred CCcEEEecCCCCccCCC-CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEe
Q 037920 74 LYTSIVLHDIRTNLLPE-VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSL 152 (505)
Q Consensus 74 ~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L 152 (505)
.+..+.+++|.+..+.. ...+..+.+|.+ +.+.....|+++ +.+..++.++.++|.+.++|++++.+..|+.|+.
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~---~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNV---HDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEe---ccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 45667788888765543 337778888888 666667777775 6788888888888888888888888888888888
Q ss_pred eccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCch
Q 037920 153 DNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWE 231 (505)
Q Consensus 153 ~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 231 (505)
++|.+.. +++++.+-.|..++..+|+++++|++++++.+|..+++.+ +.+...|.+. -.++.|++++...|.+
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~-i~m~~L~~ld~~~N~L---- 195 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENH-IAMKRLKHLDCNSNLL---- 195 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHH-HHHHHHHhcccchhhh----
Confidence 8888887 7888888888888888888888888888888888888888 6677777773 4488888888776654
Q ss_pred hhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecc----cccce---EEecCCCCccchhhH
Q 037920 232 VEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAG----VWRRE---LKICPDSKIRLKDGL 304 (505)
Q Consensus 232 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~----~~~~~---l~l~~~~~~~~~~~~ 304 (505)
+.+|..++.|.+|..|++..|++..+|+.-++..|++|.+..+....-. ....+ +.+..+.-.+.+.++
T Consensus 196 ----~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~ 271 (565)
T KOG0472|consen 196 ----ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI 271 (565)
T ss_pred ----hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHH
Confidence 5677788888888888888888888884444777777666433211100 00001 333333334445444
Q ss_pred HHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCC----------CCcccccccc---------------
Q 037920 305 IVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPP----------NPAESKRREE--------------- 359 (505)
Q Consensus 305 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~----------~~~~~l~~L~--------------- 359 (505)
.- +.+|+.|++++| .++.+|..+ +++ .|++|.+.+|+- -+.+-++.|+
T Consensus 272 cl-LrsL~rLDlSNN---~is~Lp~sL--gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 272 CL-LRSLERLDLSNN---DISSLPYSL--GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred HH-hhhhhhhcccCC---ccccCCccc--ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 43 567777777776 566677766 556 777777777760 0000111110
Q ss_pred ---------------------------------------------chhcchhhhhhhhc------------------ccc
Q 037920 360 ---------------------------------------------STDVMQSHEIILKV------------------NVN 376 (505)
Q Consensus 360 ---------------------------------------------l~~l~~~~~~~~~~------------------~~~ 376 (505)
++.+.++.|.+... ...
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence 12222222221110 001
Q ss_pred cccc-ccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceeccccccc------------
Q 037920 377 ALFV-EKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEER------------ 443 (505)
Q Consensus 377 ~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~------------ 443 (505)
+|++ ....+++|..|++++|-+.++|.. .+.+-.|+.|+++.+. .+.+ +.-.+..
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e---------~~~lv~Lq~LnlS~Nr-Fr~l--P~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLNDLPEE---------MGSLVRLQTLNLSFNR-FRML--PECLYELQTLETLLASNNQ 492 (565)
T ss_pred ccchHHHHhhhcceeeecccchhhhcchh---------hhhhhhhheecccccc-cccc--hHHHhhHHHHHHHHhcccc
Confidence 1111 113577788888888867676654 6667778888888763 3333 2211111
Q ss_pred -c----cccccccccccccccCcccccccccCCcccccCCCccceecccCc
Q 037920 444 -K----NSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCP 489 (505)
Q Consensus 444 -~----~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~ 489 (505)
. ..+..+.+|.+|++.+.. ++.++. .++.+.+|+.|++.|-|
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp---~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNND-LQQIPP---ILGNMTNLRHLELDGNP 539 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCc-hhhCCh---hhccccceeEEEecCCc
Confidence 0 235678888999988776 677766 58999999999999975
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=3.1e-22 Score=184.36 Aligned_cols=179 Identities=22% Similarity=0.324 Sum_probs=91.4
Q ss_pred cCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCee
Q 037920 72 IKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTL 150 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L 150 (505)
...+++++++.|.+.++++.. .+..+..++. .++.+..+|+++ ..+.+|..+++.+|.++.+|+..-+++.|++|
T Consensus 113 ~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~---~~N~i~slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 113 LISLVKLDCSSNELKELPDSIGRLLDLEDLDA---TNNQISSLPEDM-VNLSKLSKLDLEGNKLKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhhhhhccccceeecCchHHHHhhhhhhhc---cccccccCchHH-HHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence 444555666666655544332 5555555555 444455555554 34555555555555555555444445555555
Q ss_pred EeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920 151 SLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK 229 (505)
Q Consensus 151 ~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 229 (505)
+...|-++. |+.++.+.+|..|++..|++..+| .|..+..|.++++.. +.++.+|.+....++++.+|++..|.+
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNkl-- 264 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKL-- 264 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeecccccc--
Confidence 555555555 555555555555555555555554 444445555555444 444444444333455555555554443
Q ss_pred chhhhhccccccccCCCCcCEEEeecccCCCCCCC
Q 037920 230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG 264 (505)
Q Consensus 230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 264 (505)
...|.+++.+++|..||+++|.++.+|..
T Consensus 265 ------ke~Pde~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 265 ------KEVPDEICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred ------ccCchHHHHhhhhhhhcccCCccccCCcc
Confidence 22334444444455555554444444444
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=8.5e-20 Score=184.63 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=68.8
Q ss_pred chhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceeccc
Q 037920 360 STDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVEN 439 (505)
Q Consensus 360 l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~ 439 (505)
+..+++..|.+.+. .++....|++||.|++++|+|..++.. | +..++.|++|+++++. ++.+ +..
T Consensus 361 Lq~LylanN~Ltd~----c~p~l~~~~hLKVLhLsyNrL~~fpas------~--~~kle~LeeL~LSGNk-L~~L--p~t 425 (1081)
T KOG0618|consen 361 LQELYLANNHLTDS----CFPVLVNFKHLKVLHLSYNRLNSFPAS------K--LRKLEELEELNLSGNK-LTTL--PDT 425 (1081)
T ss_pred HHHHHHhcCccccc----chhhhccccceeeeeecccccccCCHH------H--HhchHHhHHHhcccch-hhhh--hHH
Confidence 34444444444442 344456799999999999999888653 2 7889999999999987 7766 332
Q ss_pred cccc---------------ccccccccccccccccCcccccccccCCcccccCCCccceecccCcc
Q 037920 440 QEER---------------KNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPE 490 (505)
Q Consensus 440 ~~~~---------------~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~ 490 (505)
+... .......|.|+.++++... |..+-. +. ....|.|+.|+++|-++
T Consensus 426 va~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l-~~-~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNN-LSEVTL-PE-ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhhhhHHHhhcCCceeechhhhhcCcceEEecccch-hhhhhh-hh-hCCCcccceeeccCCcc
Confidence 2211 0123345666666665433 433221 21 12238888888888664
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=3e-20 Score=187.82 Aligned_cols=227 Identities=20% Similarity=0.238 Sum_probs=130.3
Q ss_pred CCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhh---------------hccccccccCCCCcCEEEeec
Q 037920 191 RLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEM---------------EGVKNASLHELKHLTSLELHI 255 (505)
Q Consensus 191 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---------------~~~~~~~l~~l~~L~~L~l~~ 255 (505)
+|++++++. +.+..+|. .++.+.+|+.++...|.++..+..+ ...+|.....++.|++|++..
T Consensus 242 nl~~~dis~-n~l~~lp~-wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISH-NNLSNLPE-WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecch-hhhhcchH-HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 455555555 45556663 3667777777777666654333211 124555666677788888888
Q ss_pred ccCCCCCCCCC---CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhh
Q 037920 256 KDVNTLPRGLF---FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELA 332 (505)
Q Consensus 256 ~~~~~l~~~~~---~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 332 (505)
|.+..+|.... ...+..|..+..... ..+..-...++.|+.|.+.+| ...+..-+.+
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-----------------~lp~~~e~~~~~Lq~LylanN--~Ltd~c~p~l- 379 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLS-----------------TLPSYEENNHAALQELYLANN--HLTDSCFPVL- 379 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhcccc-----------------ccccccchhhHHHHHHHHhcC--cccccchhhh-
Confidence 87777776432 111222222211100 011111123567888888887 5555555555
Q ss_pred ccCCCCccEEEEeCCC--CCCcccccccc-chhcchhhhhhhhccccccccccccccccccccccccccccccccceeec
Q 037920 333 KVGPSQLKHLHIWNHP--PNPAESKRREE-STDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVM 409 (505)
Q Consensus 333 ~~~l~~L~~L~l~~~~--~~~~~~l~~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~ 409 (505)
.++.+|+.|++++|. ..+...+.+|+ ++++.+++|.+...+ .....++.|++|...+|.+..+|.
T Consensus 380 -~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-----~tva~~~~L~tL~ahsN~l~~fPe------ 447 (1081)
T KOG0618|consen 380 -VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-----DTVANLGRLHTLRAHSNQLLSFPE------ 447 (1081)
T ss_pred -ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-----HHHHhhhhhHHHhhcCCceeechh------
Confidence 678888888888884 34445555554 445555555544321 111245566666666665555543
Q ss_pred cCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccc
Q 037920 410 SCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKL 464 (505)
Q Consensus 410 ~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 464 (505)
+..+|.|+.++++.+. ++.+..+... .-|+|+.|++++...+
T Consensus 448 ----~~~l~qL~~lDlS~N~-L~~~~l~~~~--------p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 448 ----LAQLPQLKVLDLSCNN-LSEVTLPEAL--------PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred ----hhhcCcceEEecccch-hhhhhhhhhC--------CCcccceeeccCCccc
Confidence 7778889999987654 7766544322 1278999999888853
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=1.8e-15 Score=157.69 Aligned_cols=256 Identities=18% Similarity=0.193 Sum_probs=185.3
Q ss_pred CCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEe
Q 037920 73 KLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSL 152 (505)
Q Consensus 73 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L 152 (505)
.+-..|+++.+.+.++|.... ++|+.|.+ ..+.+..+|. .+++|++|++++|.++.+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L---~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVI---PDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEc---cCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeec
Confidence 346689999999998887543 58999999 5666777775 368999999999999998753 468999999
Q ss_pred eccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchh
Q 037920 153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV 232 (505)
Q Consensus 153 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 232 (505)
.+|.+..++. ...+|+.|++++|+++.+|.. +++|+.|++++ +.+..+|.. ..+|+.|++++|.+..+
T Consensus 270 s~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l----p~~L~~L~Ls~N~L~~L-- 337 (788)
T PRK15387 270 FSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLTSL-- 337 (788)
T ss_pred cCCchhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC----cccccccccccCccccc--
Confidence 9999887322 236788999999999988853 47899999998 566666642 24578888998887432
Q ss_pred hhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhccee
Q 037920 233 EMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIE 312 (505)
Q Consensus 233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~ 312 (505)
|. -..+|+.|++++|.+..+|.. ..+|+.|.+..+. +. .+.....+|+
T Consensus 338 ------P~---lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~------------------L~---~LP~l~~~L~ 385 (788)
T PRK15387 338 ------PT---LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNR------------------LT---SLPALPSGLK 385 (788)
T ss_pred ------cc---cccccceEecCCCccCCCCCC--Ccccceehhhccc------------------cc---cCcccccccc
Confidence 22 114799999999999988865 5677777654221 11 0112245789
Q ss_pred EEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccccccccc
Q 037920 313 DLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLE 392 (505)
Q Consensus 313 ~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 392 (505)
.|++++| .+..+|.. .++|+.|++++|.-.. + + ..+.+|+.|+
T Consensus 386 ~LdLs~N---~Lt~LP~l-----~s~L~~LdLS~N~Lss------I---------------------P--~l~~~L~~L~ 428 (788)
T PRK15387 386 ELIVSGN---RLTSLPVL-----PSELKELMVSGNRLTS------L---------------------P--MLPSGLLSLS 428 (788)
T ss_pred eEEecCC---cccCCCCc-----ccCCCEEEccCCcCCC------C---------------------C--cchhhhhhhh
Confidence 9999987 44455532 3678999999986111 0 0 1245688899
Q ss_pred ccccccccccccceeeccCccccccccccEEEEcccc
Q 037920 393 LDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR 429 (505)
Q Consensus 393 l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~ 429 (505)
+++|+++.++.. +..+++|+.|++++++
T Consensus 429 Ls~NqLt~LP~s---------l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 429 VYRNQLTRLPES---------LIHLSSETTVNLEGNP 456 (788)
T ss_pred hccCcccccChH---------HhhccCCCeEECCCCC
Confidence 999988877543 6778899999999887
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=3.1e-18 Score=140.28 Aligned_cols=166 Identities=24% Similarity=0.373 Sum_probs=131.5
Q ss_pred ccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-ccccc
Q 037920 86 NLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVR 164 (505)
Q Consensus 86 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~ 164 (505)
..++..+.+.+...|.+ +.+.+..+|+.+ ..+.+|++|++++|+++++|.+++.++.|+.|++..|.+.. |.++|
T Consensus 24 ~~~~gLf~~s~ITrLtL---SHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTL---SHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred hhcccccchhhhhhhhc---ccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 44555556666666666 445555566665 67888888888888888888888888888888888888777 88888
Q ss_pred CCCCCcEEEccCCCCc--ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccc
Q 037920 165 DLKKLEILCLRGSNIK--MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASL 242 (505)
Q Consensus 165 ~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 242 (505)
.++-|+.||+++|++. .+|..+..+..|+.|+++. +..+.+|.+ ++++++||.|.+..|.+. .+|.++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll--------~lpkei 169 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL--------SLPKEI 169 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh--------hCcHHH
Confidence 8888888888888775 6788888888888888888 677778887 788888888888888763 456778
Q ss_pred cCCCCcCEEEeecccCCCCCCCC
Q 037920 243 HELKHLTSLELHIKDVNTLPRGL 265 (505)
Q Consensus 243 ~~l~~L~~L~l~~~~~~~l~~~~ 265 (505)
+.+..|+.|++.+|++..+|.++
T Consensus 170 g~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHhcccceeeecChhh
Confidence 88888888888888888888774
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=3.9e-15 Score=155.28 Aligned_cols=148 Identities=24% Similarity=0.246 Sum_probs=75.7
Q ss_pred ccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccC
Q 037920 97 LKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRG 176 (505)
Q Consensus 97 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~ 176 (505)
-..|++ +...+..+|..+. .+|+.|++.+|.++.+|.. +++|++|++++|.++.++. ..++|+.|++++
T Consensus 203 ~~~LdL---s~~~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNV---GESGLTTLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPV--LPPGLLELSIFS 271 (788)
T ss_pred CcEEEc---CCCCCCcCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccC--cccccceeeccC
Confidence 345555 3334445555442 3566666666666665542 4566666666666655211 134566666666
Q ss_pred CCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecc
Q 037920 177 SNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIK 256 (505)
Q Consensus 177 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 256 (505)
|.++.+|.. .++|+.|++++ +.+..+|. .+++|+.|++++|.+... |.. ..+|+.|++++|
T Consensus 272 N~L~~Lp~l---p~~L~~L~Ls~-N~Lt~LP~----~p~~L~~LdLS~N~L~~L--------p~l---p~~L~~L~Ls~N 332 (788)
T PRK15387 272 NPLTHLPAL---PSGLCKLWIFG-NQLTSLPV----LPPGLQELSVSDNQLASL--------PAL---PSELCKLWAYNN 332 (788)
T ss_pred Cchhhhhhc---hhhcCEEECcC-Cccccccc----cccccceeECCCCccccC--------CCC---cccccccccccC
Confidence 666555532 24455666665 34444443 134566666666655321 111 123555566666
Q ss_pred cCCCCCCCCCCCCCcEEEEE
Q 037920 257 DVNTLPRGLFFPKLQRYKIH 276 (505)
Q Consensus 257 ~~~~l~~~~~~~~L~~L~~~ 276 (505)
.+..+|.. ..+|+.|+++
T Consensus 333 ~L~~LP~l--p~~Lq~LdLS 350 (788)
T PRK15387 333 QLTSLPTL--PSGLQELSVS 350 (788)
T ss_pred cccccccc--ccccceEecC
Confidence 66555542 3445555543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=2.1e-15 Score=158.24 Aligned_cols=247 Identities=19% Similarity=0.274 Sum_probs=130.0
Q ss_pred CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEee
Q 037920 74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLD 153 (505)
Q Consensus 74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~ 153 (505)
+...++++++++..+|... .++++.|++ .++.+..+|..++ .+|+.|++++|.++.+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~L---s~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLIL---DNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEe---cCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 3455666666665555422 235666666 4444455555432 356666666666665554432 356666666
Q ss_pred ccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchh
Q 037920 154 NCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV 232 (505)
Q Consensus 154 ~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 232 (505)
+|.+.. |..+. .+|+.|++++|+++.+|..+. ++|+.|++++ +.+..+|.. + .++|+.|++++|.+..+
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~L-- 319 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-L--PSGITHLNVQSNSLTAL-- 319 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-c--hhhHHHHHhcCCccccC--
Confidence 665555 33332 355666666555555554332 3566666655 334444432 1 13455555555554321
Q ss_pred hhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhccee
Q 037920 233 EMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIE 312 (505)
Q Consensus 233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~ 312 (505)
|..+ .++|+.|++++|.+..+|..+ +++|+
T Consensus 320 ------P~~l--~~sL~~L~Ls~N~Lt~LP~~l------------------------------------------~~sL~ 349 (754)
T PRK15370 320 ------PETL--PPGLKTLEAGENALTSLPASL------------------------------------------PPELQ 349 (754)
T ss_pred ------Cccc--cccceeccccCCccccCChhh------------------------------------------cCccc
Confidence 1111 134555555555544444321 35677
Q ss_pred EEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccccccccc
Q 037920 313 DLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLE 392 (505)
Q Consensus 313 ~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 392 (505)
.|++++| .+..+|..+ .++|+.|++++|.-. .+. . ...++|+.|+
T Consensus 350 ~L~Ls~N---~L~~LP~~l----p~~L~~LdLs~N~Lt------~LP----------------~------~l~~sL~~Ld 394 (754)
T PRK15370 350 VLDVSKN---QITVLPETL----PPTITTLDVSRNALT------NLP----------------E------NLPAALQIMQ 394 (754)
T ss_pred EEECCCC---CCCcCChhh----cCCcCEEECCCCcCC------CCC----------------H------hHHHHHHHHh
Confidence 7777776 344556544 357888888877511 110 0 0123577788
Q ss_pred ccccccccccccceeeccCccccccccccEEEEcccc
Q 037920 393 LDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR 429 (505)
Q Consensus 393 l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~ 429 (505)
+++|++..++.. +..| ...+|++..|.+.+++
T Consensus 395 Ls~N~L~~LP~s---l~~~--~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 395 ASRNNLVRLPES---LPHF--RGEGPQPTRIIVEYNP 426 (754)
T ss_pred hccCCcccCchh---HHHH--hhcCCCccEEEeeCCC
Confidence 888777666432 1222 3445777788887776
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=7.9e-18 Score=137.90 Aligned_cols=164 Identities=23% Similarity=0.379 Sum_probs=148.5
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS 140 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 140 (505)
.+.++++.-.+++++++.+++|++..+|... .+.+|++|++ .++-+..+|.++ +.+++|+.|++.-|.+..+|..
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~---~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNL---SNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhc---ccchhhhcChhh-hhchhhhheecchhhhhcCccc
Confidence 4556677778899999999999998887665 9999999999 888889999886 8899999999999999999999
Q ss_pred ccCCCCCCeeEeeccCCCC---cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCc
Q 037920 141 LGLLSNLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHL 217 (505)
Q Consensus 141 l~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 217 (505)
|+.++.|+.|++.+|.+.+ |..+.-+..|+.|+++.|.++.+|+.++++++|+.|.+.. +.+-.+|.+ ++.++.|
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~l 175 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRL 175 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHH
Confidence 9999999999999999877 7888889999999999999999999999999999999999 667789998 8999999
Q ss_pred cEEEeeCCCCCCch
Q 037920 218 EELYIGYNSFGKWE 231 (505)
Q Consensus 218 ~~L~l~~~~~~~~~ 231 (505)
++|.+.+|+++..+
T Consensus 176 relhiqgnrl~vlp 189 (264)
T KOG0617|consen 176 RELHIQGNRLTVLP 189 (264)
T ss_pred HHHhcccceeeecC
Confidence 99999999875543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=1.4e-14 Score=151.95 Aligned_cols=234 Identities=19% Similarity=0.287 Sum_probs=170.2
Q ss_pred CCCCCcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccccc
Q 037920 63 YREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLG 142 (505)
Q Consensus 63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~ 142 (505)
+..++. ..++.++.|++++|.+..+|... ..+|++|++ .++.+..+|..+ ..+|+.|++++|.++.+|..+.
T Consensus 190 LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~L---s~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~ 261 (754)
T PRK15370 190 LTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYA---NSNQLTSIPATL---PDTIQEMELSINRITELPERLP 261 (754)
T ss_pred cCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEEC---CCCccccCChhh---hccccEEECcCCccCcCChhHh
Confidence 344443 24678999999999999988654 369999999 566677888765 3579999999999999988764
Q ss_pred CCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEE
Q 037920 143 LLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELY 221 (505)
Q Consensus 143 ~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 221 (505)
.+|++|++++|.+.. |..+. .+|+.|++++|+++.+|..+. ++|+.|++++ +.+..+|.. -.++|+.|+
T Consensus 262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~---l~~sL~~L~ 331 (754)
T PRK15370 262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET---LPPGLKTLE 331 (754)
T ss_pred --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc---ccccceecc
Confidence 589999999999988 66554 589999999999999886543 5799999998 566677754 236899999
Q ss_pred eeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccch
Q 037920 222 IGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLK 301 (505)
Q Consensus 222 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 301 (505)
+++|.++.+ |..+. ++|+.|++++|.+..+|..+ .++|+.|++..+. -...+
T Consensus 332 Ls~N~Lt~L--------P~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~-----------------Lt~LP 383 (754)
T PRK15370 332 AGENALTSL--------PASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRNA-----------------LTNLP 383 (754)
T ss_pred ccCCccccC--------Chhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCCc-----------------CCCCC
Confidence 999987543 33333 68999999999998888754 4677777764321 11122
Q ss_pred hhHHHHhcceeEEeecCCCCCCcchhhhhhh--ccCCCCccEEEEeCCC
Q 037920 302 DGLIVQLQGIEDLGLSKLPEQDVDYFVNELA--KVGPSQLKHLHIWNHP 348 (505)
Q Consensus 302 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~--~~~l~~L~~L~l~~~~ 348 (505)
..+ ...|+.|++++| .+..+|..+. ...++++..+.+.+|+
T Consensus 384 ~~l---~~sL~~LdLs~N---~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 384 ENL---PAALQIMQASRN---NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HhH---HHHHHHHhhccC---CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 222 235777888887 3444444331 1345777888887776
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=1.9e-14 Score=133.09 Aligned_cols=262 Identities=19% Similarity=0.231 Sum_probs=152.0
Q ss_pred ccCCCCCcccccCCCcEEEecCCCCccCCCCC--CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeC-CcCccC
Q 037920 61 EGYREWSDESAIKLYTSIVLHDIRTNLLPEVV--ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTN-INLMSL 137 (505)
Q Consensus 61 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l 137 (505)
+++++++. ..+.....+.+..|+|..+|+.. .+++||.|+| +.+.+..|.+..|.+++.|..|-+.+ |.|+.+
T Consensus 56 ~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdL---S~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 56 KGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDL---SKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecc---cccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 35666554 46677788888888888887654 7888888888 66666777777778888777766555 778887
Q ss_pred cc-cccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCc--------
Q 037920 138 PS-SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEV-------- 205 (505)
Q Consensus 138 ~~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~-------- 205 (505)
|. .|..|..|+-|.+.-|.+.- ...+..+++|..|.+..|.++.++. .+..+..++++++..+..+..
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 74 56777777777777777665 3666777777777777776666654 556666666666654321100
Q ss_pred ----cChhhhcCCCCccEEEeeCCCCCCc------------hhhh------hc-cccccccCCCCcCEEEeecccCCCCC
Q 037920 206 ----IPANVLSNLSHLEELYIGYNSFGKW------------EVEM------EG-VKNASLHELKHLTSLELHIKDVNTLP 262 (505)
Q Consensus 206 ----~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~------~~-~~~~~l~~l~~L~~L~l~~~~~~~l~ 262 (505)
.|.. .+.........+.+.++... .... .. .-...|+.+++|++|++++|+++.+.
T Consensus 212 ~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~ 290 (498)
T KOG4237|consen 212 DLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE 290 (498)
T ss_pred HHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence 0100 11111111111110000000 0000 00 11135777888888888888887665
Q ss_pred CCCC--CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCcc
Q 037920 263 RGLF--FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLK 340 (505)
Q Consensus 263 ~~~~--~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~ 340 (505)
...+ ...++.|.+..+. ..........-+.+|+.|+|.+| ......|-.+ ..+..|.
T Consensus 291 ~~aFe~~a~l~eL~L~~N~-----------------l~~v~~~~f~~ls~L~tL~L~~N--~it~~~~~aF--~~~~~l~ 349 (498)
T KOG4237|consen 291 DGAFEGAAELQELYLTRNK-----------------LEFVSSGMFQGLSGLKTLSLYDN--QITTVAPGAF--QTLFSLS 349 (498)
T ss_pred hhhhcchhhhhhhhcCcch-----------------HHHHHHHhhhccccceeeeecCC--eeEEEecccc--cccceee
Confidence 5543 6666666654321 11122233334667777777776 3323333333 6667777
Q ss_pred EEEEeCCC
Q 037920 341 HLHIWNHP 348 (505)
Q Consensus 341 ~L~l~~~~ 348 (505)
+|.+-.|+
T Consensus 350 ~l~l~~Np 357 (498)
T KOG4237|consen 350 TLNLLSNP 357 (498)
T ss_pred eeehccCc
Confidence 77776665
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=9.4e-14 Score=134.79 Aligned_cols=139 Identities=20% Similarity=0.205 Sum_probs=86.4
Q ss_pred HHhCCCCccEEEEeCCcCcc-----CcccccCCCCCCeeEeeccCCCC--------cccccCCCCCcEEEccCCCCcc-c
Q 037920 117 FFERMMQVRVINLTNINLMS-----LPSSLGLLSNLRTLSLDNCKLLD--------ITVVRDLKKLEILCLRGSNIKM-L 182 (505)
Q Consensus 117 ~~~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~l~~--------~~~i~~l~~L~~L~l~~~~l~~-l 182 (505)
+|..+.+|+.|+++++.++. ++..+...+.|++|+++++.+.. +..+..+++|+.|++++|.+.. .
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 34566668888888777642 45556667777888877776551 2455667788888888877652 3
Q ss_pred chhhhCCCC---CCEEeeeCCCCCC----ccChhhhcCC-CCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEee
Q 037920 183 PIEVSELAR---LRLLGLRDCRELE----VIPANVLSNL-SHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH 254 (505)
Q Consensus 183 p~~i~~l~~---L~~L~l~~~~~~~----~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 254 (505)
+..+..+.. |++|++++|.... .+... +..+ ++|++|++++|.++... ...+...+..+++|++|+++
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS---CEALAKALRANRDLKELNLA 173 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH---HHHHHHHHHhCCCcCEEECc
Confidence 344444444 8888887754321 11122 4555 77888888888775322 12334456666778888877
Q ss_pred cccCC
Q 037920 255 IKDVN 259 (505)
Q Consensus 255 ~~~~~ 259 (505)
+|.+.
T Consensus 174 ~n~l~ 178 (319)
T cd00116 174 NNGIG 178 (319)
T ss_pred CCCCc
Confidence 76643
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.39 E-value=2.1e-13 Score=132.29 Aligned_cols=81 Identities=25% Similarity=0.264 Sum_probs=34.3
Q ss_pred hCCCCccEEEEeCCcCcc-CcccccCCC---CCCeeEeeccCCCC------cccccCC-CCCcEEEccCCCCc-----cc
Q 037920 119 ERMMQVRVINLTNINLMS-LPSSLGLLS---NLRTLSLDNCKLLD------ITVVRDL-KKLEILCLRGSNIK-----ML 182 (505)
Q Consensus 119 ~~l~~L~~L~l~~~~~~~-l~~~l~~l~---~L~~L~L~~~~l~~------~~~i~~l-~~L~~L~l~~~~l~-----~l 182 (505)
..+++|+.|+++++.+.. .+..+..+. +|++|++++|.+.+ ...+..+ ++|+.|++++|.++ .+
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 344455555555554432 222222222 25555555554442 1223333 45555555555444 12
Q ss_pred chhhhCCCCCCEEeeeC
Q 037920 183 PIEVSELARLRLLGLRD 199 (505)
Q Consensus 183 p~~i~~l~~L~~L~l~~ 199 (505)
+..+..+++|++|++++
T Consensus 158 ~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 158 AKALRANRDLKELNLAN 174 (319)
T ss_pred HHHHHhCCCcCEEECcC
Confidence 22333444455555544
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=4.5e-14 Score=130.73 Aligned_cols=142 Identities=22% Similarity=0.338 Sum_probs=106.9
Q ss_pred cCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc-CcccccCCCCCCeeEeec-cCCC
Q 037920 81 HDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS-LPSSLGLLSNLRTLSLDN-CKLL 158 (505)
Q Consensus 81 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~~L~~L~L~~-~~l~ 158 (505)
++-.+.++|... .+....+.| +.+.+..+|+..|+.+++||.|||+.|.|.. -|+.|..+..|..|-+.+ |.|+
T Consensus 54 r~~GL~eVP~~L-P~~tveirL---dqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 54 RGKGLTEVPANL-PPETVEIRL---DQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred cCCCcccCcccC-CCcceEEEe---ccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 334445555432 234566777 7778888888888999999999999998887 467888888888877766 6688
Q ss_pred C-c-ccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920 159 D-I-TVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 159 ~-~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
. + ..++.+..|+.|.+.-|++..++ ..+..+++|..|.+.. +.+..++...+..+..++.+.+..|.+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCcc
Confidence 8 5 67788888888888888887664 5678888888888888 666777776577778888887776653
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.30 E-value=6.6e-12 Score=134.12 Aligned_cols=180 Identities=23% Similarity=0.297 Sum_probs=124.3
Q ss_pred CcccccCCCcEEEecCCC--CccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccccc
Q 037920 67 SDESAIKLYTSIVLHDIR--TNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLG 142 (505)
Q Consensus 67 ~~~~~~~~l~~l~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~ 142 (505)
......+++++|-+.+|. +..++. ...++.|++|++ +++.....+|.++ +.+-+||+|+++++.+..+|..+.
T Consensus 539 ~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDL--s~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~ 615 (889)
T KOG4658|consen 539 AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDL--SGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLG 615 (889)
T ss_pred cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEEC--CCCCccCcCChHH-hhhhhhhcccccCCCccccchHHH
Confidence 334455689999999986 566665 338999999999 5677788899886 899999999999999999999999
Q ss_pred CCCCCCeeEeeccCCC-Cc-ccccCCCCCcEEEccCCCCcc---cchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCc
Q 037920 143 LLSNLRTLSLDNCKLL-DI-TVVRDLKKLEILCLRGSNIKM---LPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHL 217 (505)
Q Consensus 143 ~l~~L~~L~L~~~~l~-~~-~~i~~l~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 217 (505)
++..|.||++..+.-. .+ .....+.+|++|.+....... .-..+.++.+|+.+....+.. .+... +..++.|
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~-l~~~~~L 692 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLED-LLGMTRL 692 (889)
T ss_pred HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhh-hhhhHHH
Confidence 9999999999988844 44 555569999999998765321 123445566666665544221 11111 3333333
Q ss_pred cE----EEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCC
Q 037920 218 EE----LYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNT 260 (505)
Q Consensus 218 ~~----L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 260 (505)
.. +.+.++. ....+..+..+++|+.|.+..+...+
T Consensus 693 ~~~~~~l~~~~~~--------~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 693 RSLLQSLSIEGCS--------KRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred HHHhHhhhhcccc--------cceeecccccccCcceEEEEcCCCch
Confidence 32 2222211 23344567778888888888777643
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=4.8e-13 Score=129.47 Aligned_cols=188 Identities=24% Similarity=0.311 Sum_probs=163.1
Q ss_pred cccCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCC
Q 037920 70 SAIKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLR 148 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~ 148 (505)
........++++.|++..+|... .+..|..+.+ +.+.+-.+|..+ ..+..|++++++.|++..+|..++.|+ |+
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liL---y~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLIL---YHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LK 146 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHH---Hhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ce
Confidence 34566778999999999998766 8888999999 666677788776 789999999999999999999998887 99
Q ss_pred eeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920 149 TLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 149 ~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
.|.+++|++.. |+.++.+..|..||.+.|.+..+|..++.+.+|+.|++.. +.+..+|.+ +..++ |..|+++.|++
T Consensus 147 vli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~Lp-Li~lDfScNki 223 (722)
T KOG0532|consen 147 VLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSLP-LIRLDFSCNKI 223 (722)
T ss_pred eEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCCc-eeeeecccCce
Confidence 99999999999 8999999999999999999999999999999999999999 778889988 67555 99999998876
Q ss_pred CCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC-CCCCcEE
Q 037920 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF-FPKLQRY 273 (505)
Q Consensus 228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~L~~L 273 (505)
..+|..|.+|+.|+.|.+.+|.+.+-|..+. ...+..+
T Consensus 224 --------s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 224 --------SYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIF 262 (722)
T ss_pred --------eecchhhhhhhhheeeeeccCCCCCChHHHHhccceeee
Confidence 4567889999999999999999998887776 3333333
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=6.1e-11 Score=101.91 Aligned_cols=124 Identities=20% Similarity=0.293 Sum_probs=41.6
Q ss_pred ccCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccc-cCCCCCC
Q 037920 71 AIKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSL-GLLSNLR 148 (505)
Q Consensus 71 ~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l-~~l~~L~ 148 (505)
.+.+++.|++++|.+..+.... .+.+|++|++ +++.+..++. +..++.|+.|++++|.++++.+.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~L---s~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDL---SNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -------------------S--TT-TT--EEE----TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccchhhhhcCCCEEEC---CCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3445677777777777776655 5667777777 5555556654 456777777777777777665444 3467777
Q ss_pred eeEeeccCCCC---cccccCCCCCcEEEccCCCCcccch----hhhCCCCCCEEeeeC
Q 037920 149 TLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLPI----EVSELARLRLLGLRD 199 (505)
Q Consensus 149 ~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~ 199 (505)
+|++++|.+.+ +..+..+++|+.|++.+|.++..+. .+..+|+|+.||-..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 77777777655 3555666777777777766653322 345566666665443
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=4.9e-11 Score=102.51 Aligned_cols=130 Identities=22% Similarity=0.300 Sum_probs=40.4
Q ss_pred hCCCCccEEEEeCCcCccCccccc-CCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhh-hCCCCCCEEe
Q 037920 119 ERMMQVRVINLTNINLMSLPSSLG-LLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLG 196 (505)
Q Consensus 119 ~~l~~L~~L~l~~~~~~~l~~~l~-~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~ 196 (505)
.+..+++.|+++++.|+.+. .++ .+.+|+.|++++|.+..++.+..+++|++|++++|+++.+...+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34556667777777666652 344 46667777777777666666666777777777777776665444 3467777777
Q ss_pred eeCCCCCCccCh-hhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEee
Q 037920 197 LRDCRELEVIPA-NVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH 254 (505)
Q Consensus 197 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 254 (505)
+++ +.+..+.. ..+..+++|++|++.+|.+... ...-...+..+|+|+.||-.
T Consensus 95 L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEK----KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGS----TTHHHHHHHH-TT-SEETTE
T ss_pred CcC-CcCCChHHhHHHHcCCCcceeeccCCcccch----hhHHHHHHHHcChhheeCCE
Confidence 766 33333221 1145666777777776665432 11222345566666666643
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=8.8e-12 Score=120.90 Aligned_cols=186 Identities=19% Similarity=0.303 Sum_probs=154.5
Q ss_pred EEEecCCCCccCCCCC---CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEee
Q 037920 77 SIVLHDIRTNLLPEVV---ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLD 153 (505)
Q Consensus 77 ~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~ 153 (505)
++.|++.++..+|... .+..-...++ +.+....+|..+ ..+..|..+.++.|.+..+|..++++..|.+|+|+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDl---srNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADL---SRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLS 129 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhc---cccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhc
Confidence 4666666666666433 4444455666 667777888876 78899999999999999999999999999999999
Q ss_pred ccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchh
Q 037920 154 NCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV 232 (505)
Q Consensus 154 ~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 232 (505)
.|.++. |..++.| -|+.|-+++|+++.+|..++.+.+|.+|+.+. +.+..+|.. ++.+.+|+.|++..|.+.+
T Consensus 130 ~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l~~--- 203 (722)
T KOG0532|consen 130 SNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHLED--- 203 (722)
T ss_pred cchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhhhh---
Confidence 999998 7888777 58999999999999999999889999999998 667788887 8999999999999888644
Q ss_pred hhhccccccccCCCCcCEEEeecccCCCCCCCCC-CCCCcEEEEEEc
Q 037920 233 EMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF-FPKLQRYKIHIG 278 (505)
Q Consensus 233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~~~~~ 278 (505)
+|.++..++ |..||+++|++..+|..+. +..|+.|.+..+
T Consensus 204 -----lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 204 -----LPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred -----CCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccC
Confidence 556777554 8999999999999999876 888888887644
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.02 E-value=9.1e-12 Score=116.56 Aligned_cols=286 Identities=16% Similarity=0.159 Sum_probs=157.3
Q ss_pred CCCeeEeeccC-CCC--c-ccccCCCCCcEEEccCC-CCcc--cchhhhCCCCCCEEeeeCCCCCCccChh-hhcCCCCc
Q 037920 146 NLRTLSLDNCK-LLD--I-TVVRDLKKLEILCLRGS-NIKM--LPIEVSELARLRLLGLRDCRELEVIPAN-VLSNLSHL 217 (505)
Q Consensus 146 ~L~~L~L~~~~-l~~--~-~~i~~l~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L 217 (505)
.|+.|.++++. ... . ....+++++++|++.+| +++. +-..-..+++|++|++..|..++...-. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57777777776 332 2 34456778888888777 4442 2223346678888888877766654321 24567888
Q ss_pred cEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC----CCCCCCcEEEEEEcceeecccccceEEec
Q 037920 218 EELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG----LFFPKLQRYKIHIGGYYYAGVWRRELKIC 293 (505)
Q Consensus 218 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~----~~~~~L~~L~~~~~~~~~~~~~~~~l~l~ 293 (505)
++++++||.-.. ...+..-...+++++.+...++.-..+... .....+.++++..
T Consensus 219 ~~lNlSwc~qi~-----~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~---------------- 277 (483)
T KOG4341|consen 219 KYLNLSWCPQIS-----GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH---------------- 277 (483)
T ss_pred HHhhhccCchhh-----cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh----------------
Confidence 888888775421 111222233444455554443321100000 0011122222110
Q ss_pred CCCCccc--hhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhh
Q 037920 294 PDSKIRL--KDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIIL 371 (505)
Q Consensus 294 ~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~ 371 (505)
...+.- ...+...+..|+.|..+++ ...+..+-|--..+..+|+.+.+..|...+...|..|.
T Consensus 278 -c~~lTD~~~~~i~~~c~~lq~l~~s~~--t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~------------ 342 (483)
T KOG4341|consen 278 -CNQLTDEDLWLIACGCHALQVLCYSSC--TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG------------ 342 (483)
T ss_pred -hccccchHHHHHhhhhhHhhhhcccCC--CCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh------------
Confidence 111111 1112333678999999999 56666555554578899999999999865544444332
Q ss_pred hcccccccccccccccccccccccc-ccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccc
Q 037920 372 KVNVNALFVEKVTLPKLENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIF 450 (505)
Q Consensus 372 ~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~ 450 (505)
...+.|+.+++.+| .+.+-...++ ..++|.|++|.+++|..+++- ++..........
T Consensus 343 -----------rn~~~Le~l~~e~~~~~~d~tL~sl-------s~~C~~lr~lslshce~itD~----gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 343 -----------RNCPHLERLDLEECGLITDGTLASL-------SRNCPRLRVLSLSHCELITDE----GIRHLSSSSCSL 400 (483)
T ss_pred -----------cCChhhhhhcccccceehhhhHhhh-------ccCCchhccCChhhhhhhhhh----hhhhhhhccccc
Confidence 24667777777777 3322211111 455778888888888776633 222222233455
Q ss_pred cccccccccCcccccccccCCcccccCCCccceecccCccc
Q 037920 451 PQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEF 491 (505)
Q Consensus 451 p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L 491 (505)
..|+.+.+.+||.+..-. -+....+++|+.+++.+|...
T Consensus 401 ~~l~~lEL~n~p~i~d~~--Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDAT--LEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred cccceeeecCCCCchHHH--HHHHhhCcccceeeeechhhh
Confidence 677777788888763321 112556777777777777443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=5.1e-11 Score=106.89 Aligned_cols=182 Identities=16% Similarity=0.262 Sum_probs=141.4
Q ss_pred cccCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccc----cChh-------------------HHhCCCCcc
Q 037920 70 SAIKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLT----IPNK-------------------FFERMMQVR 125 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~----~~~~-------------------~~~~l~~L~ 125 (505)
...++++.+-++.+.-..+.... .-+.|.++.+ .+..+.. +|.. .......|+
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v---~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt 287 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICV---HNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELT 287 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeee---ecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhh
Confidence 45677888888887765554443 5567777776 3222111 1110 012346789
Q ss_pred EEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCc
Q 037920 126 VINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEV 205 (505)
Q Consensus 126 ~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 205 (505)
.+|+++|.|+.+-++..-.|.+|.|++++|.+..+..+..+++|+.||+++|.++.+..+=.++-+.+.|.+.+ +.+..
T Consensus 288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~ 366 (490)
T KOG1259|consen 288 ELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIET 366 (490)
T ss_pred hccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhh
Confidence 99999999999888888899999999999999998889999999999999999888866667888999999999 66676
Q ss_pred cChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCC
Q 037920 206 IPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPR 263 (505)
Q Consensus 206 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 263 (505)
+.. ++++-+|..|++.+|++.... ....++++|-|+++.+.+|.+..++.
T Consensus 367 LSG--L~KLYSLvnLDl~~N~Ie~ld------eV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 367 LSG--LRKLYSLVNLDLSSNQIEELD------EVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhh--hHhhhhheeccccccchhhHH------HhcccccccHHHHHhhcCCCccccch
Confidence 665 789999999999999987543 23578999999999999998776654
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.5e-11 Score=110.44 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=67.2
Q ss_pred hhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccc
Q 037920 302 DGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVE 381 (505)
Q Consensus 302 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~ 381 (505)
.++...+|+|+.|++..|........+. .-++.|++|++++|.-+..+ .+..
T Consensus 215 ~~~~~~fPsl~~L~L~~N~~~~~~~~~~----~i~~~L~~LdLs~N~li~~~------------------------~~~~ 266 (505)
T KOG3207|consen 215 QWILLTFPSLEVLYLEANEIILIKATST----KILQTLQELDLSNNNLIDFD------------------------QGYK 266 (505)
T ss_pred HHHHHhCCcHHHhhhhcccccceecchh----hhhhHHhhccccCCcccccc------------------------cccc
Confidence 3444457777777777762122222232 23577777777777632211 2233
Q ss_pred cccccccccccccccccccccccceeeccCcc---ccccccccEEEEccccccccceecccccccccccccccccccccc
Q 037920 382 KVTLPKLENLELDSINVERIWQSHVAVMSCVS---NNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKM 458 (505)
Q Consensus 382 ~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~---l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l 458 (505)
.+.||.|..|+++.+.+.++.. .+|.. ...+|+|++|.+..++ +.+|..... ....++|+.|.+
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~-----~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~-------l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAE-----PDVESLDKTHTFPKLEYLNISENN-IRDWRSLNH-------LRTLENLKHLRI 333 (505)
T ss_pred cccccchhhhhccccCcchhcC-----CCccchhhhcccccceeeecccCc-cccccccch-------hhccchhhhhhc
Confidence 3468888888888887776622 22322 4567888888888776 544422221 234466666664
Q ss_pred cC
Q 037920 459 DD 460 (505)
Q Consensus 459 ~~ 460 (505)
..
T Consensus 334 ~~ 335 (505)
T KOG3207|consen 334 TL 335 (505)
T ss_pred cc
Confidence 33
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.3e-10 Score=106.83 Aligned_cols=157 Identities=16% Similarity=0.187 Sum_probs=71.4
Q ss_pred CCCCccEEEeeecCCCCccccCh-hHHhCCCCccEEEEeCCcCcc---CcccccCCCCCCeeEeeccCCCCc---ccccC
Q 037920 93 ESPQLKLLFICADQESSSLTIPN-KFFERMMQVRVINLTNINLMS---LPSSLGLLSNLRTLSLDNCKLLDI---TVVRD 165 (505)
Q Consensus 93 ~~~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~---l~~~l~~l~~L~~L~L~~~~l~~~---~~i~~ 165 (505)
++++|+.+.+ ++.....++. .....|++++.||++.|-+.. +..-...+++|+.|+++.|.+..+ ..-..
T Consensus 119 n~kkL~~IsL---dn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISL---DNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hHHhhhheee---cCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 5555555555 4444333332 233556666666666654443 222334556666666665554441 11124
Q ss_pred CCCCcEEEccCCCCc--ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhcccccccc
Q 037920 166 LKKLEILCLRGSNIK--MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLH 243 (505)
Q Consensus 166 l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 243 (505)
+.+|+.|.++.|+++ .+......+|+|..|++.+|+.+...... -.-+..|++|++++|.+.+++. ...++
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~------~~~~~ 268 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQ------GYKVG 268 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccccc------ccccc
Confidence 455555555555554 11122233455555555554321111111 1234445555555555443221 12234
Q ss_pred CCCCcCEEEeecccCC
Q 037920 244 ELKHLTSLELHIKDVN 259 (505)
Q Consensus 244 ~l~~L~~L~l~~~~~~ 259 (505)
.++.|+.|+++.+++.
T Consensus 269 ~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIA 284 (505)
T ss_pred cccchhhhhccccCcc
Confidence 4555555555555443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=2.1e-09 Score=107.53 Aligned_cols=188 Identities=26% Similarity=0.330 Sum_probs=145.5
Q ss_pred EEEecCCCC-ccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCC-CccEEEEeCCcCccCcccccCCCCCCeeEeec
Q 037920 77 SIVLHDIRT-NLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMM-QVRVINLTNINLMSLPSSLGLLSNLRTLSLDN 154 (505)
Q Consensus 77 ~l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~ 154 (505)
.+....+.+ ..+......+.+..|.+ .++.+..++... ..+. +|+.|++++|.+..+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l---~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDL---DNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhhcccceeEEec---CCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence 466666666 44444446678899998 777778887754 4453 89999999999999887889999999999999
Q ss_pred cCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhh
Q 037920 155 CKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVE 233 (505)
Q Consensus 155 ~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 233 (505)
|.+.. +...+.+++|+.|++++++++.+|..+.....|+.+.+.++.. ...+.. +..+.++..+.+..+.+..
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~-~~~~~~l~~l~l~~n~~~~---- 246 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSS-LSNLKNLSGLELSNNKLED---- 246 (394)
T ss_pred chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchh-hhhcccccccccCCceeee----
Confidence 99988 5666689999999999999999988777778899999988433 334433 6788888888877766532
Q ss_pred hhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEc
Q 037920 234 MEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIG 278 (505)
Q Consensus 234 ~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~ 278 (505)
++..+..++.++.|++++|.+..++....+.+++.++++..
T Consensus 247 ----~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 247 ----LPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ----ccchhccccccceeccccccccccccccccCccCEEeccCc
Confidence 24667888889999999999988887444788888887643
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=2.4e-09 Score=107.02 Aligned_cols=173 Identities=28% Similarity=0.360 Sum_probs=92.6
Q ss_pred CCCcEEEecCCCCccCCCCCCCC--CccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCee
Q 037920 73 KLYTSIVLHDIRTNLLPEVVESP--QLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTL 150 (505)
Q Consensus 73 ~~l~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L 150 (505)
+.++.+++.++.+..++...... +|+.|++ ..+.+..++.. ...+++|+.|++++|.+..+|...+.++.|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l---~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDL---SDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccc---cccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 34555666666665555544332 5666666 44444444322 255666666666666666655554456666666
Q ss_pred EeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920 151 SLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK 229 (505)
Q Consensus 151 ~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 229 (505)
++++|.+.. +..+..+.+|++|.+++|.+...+..+.++.++..+.+.+ +.+..++.. ++.+++++.|++++|.+..
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceeccccccccc
Confidence 666666655 4444455556666666654444444555555555555444 333333333 4555556666666555433
Q ss_pred chhhhhccccccccCCCCcCEEEeecccCCC
Q 037920 230 WEVEMEGVKNASLHELKHLTSLELHIKDVNT 260 (505)
Q Consensus 230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 260 (505)
++ . +..+.+++.|+++++.+..
T Consensus 270 i~--------~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 270 IS--------S-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cc--------c-ccccCccCEEeccCccccc
Confidence 21 1 5555566666666555543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=2.6e-10 Score=102.38 Aligned_cols=127 Identities=21% Similarity=0.242 Sum_probs=73.1
Q ss_pred CCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCc-ccccCCCCCcEE
Q 037920 94 SPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDI-TVVRDLKKLEIL 172 (505)
Q Consensus 94 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~-~~i~~l~~L~~L 172 (505)
...|.++++ +.+.+..+.+++ +-.+.+++|++++|.+..+-. +..+++|+.|+|++|.+... ..=.++-|+++|
T Consensus 283 Wq~LtelDL---S~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDL---SGNLITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccc---cccchhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 344556666 555555555554 556666666666666665432 55666666666666666553 222355566666
Q ss_pred EccCCCCcccchhhhCCCCCCEEeeeCCCCCCccC--hhhhcCCCCccEEEeeCCCCC
Q 037920 173 CLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIP--ANVLSNLSHLEELYIGYNSFG 228 (505)
Q Consensus 173 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~ 228 (505)
.+++|.++.+. +++++-+|..|++++ +.+..+. .. ||++|.|+.+.+.+|.+.
T Consensus 358 ~La~N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~-IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNH-IGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhhh-hhHhhhhheeccccc-cchhhHHHhcc-cccccHHHHHhhcCCCcc
Confidence 66666666553 566666666666666 3333321 12 566666666666666553
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.83 E-value=8.2e-10 Score=101.44 Aligned_cols=242 Identities=16% Similarity=0.134 Sum_probs=125.2
Q ss_pred cccCCCcEEEecCCCCcc-----CCC-CCCCCCccEEEeeecCCCC-ccccChhH------HhCCCCccEEEEeCCcCcc
Q 037920 70 SAIKLYTSIVLHDIRTNL-----LPE-VVESPQLKLLFICADQESS-SLTIPNKF------FERMMQVRVINLTNINLMS 136 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~------~~~l~~L~~L~l~~~~~~~ 136 (505)
.....++.+++++|.+.. +.. ..+.++|+..++.+..... ...+|+.+ +-.+++|++||||+|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 345678888888888721 211 2255677777772111111 12233221 2345677777777776532
Q ss_pred -----CcccccCCCCCCeeEeeccCCCC-c-c-------------cccCCCCCcEEEccCCCCccc-----chhhhCCCC
Q 037920 137 -----LPSSLGLLSNLRTLSLDNCKLLD-I-T-------------VVRDLKKLEILCLRGSNIKML-----PIEVSELAR 191 (505)
Q Consensus 137 -----l~~~l~~l~~L~~L~L~~~~l~~-~-~-------------~i~~l~~L~~L~l~~~~l~~l-----p~~i~~l~~ 191 (505)
+.+-+..+..|++|+|.+|.+.. - . .++.-+.|+.+...+|++..- ...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 22344556667777777666554 1 1 122345556665555554422 223444455
Q ss_pred CCEEeeeCCCCCCc---cChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCC
Q 037920 192 LRLLGLRDCRELEV---IPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFP 268 (505)
Q Consensus 192 L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~ 268 (505)
|+.+.+..|..-.. .-...+..+++|++|++.+|.++.... -.+...++.+++|+.|+++.|.+..
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs---~~LakaL~s~~~L~El~l~dcll~~-------- 255 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS---VALAKALSSWPHLRELNLGDCLLEN-------- 255 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH---HHHHHHhcccchheeeccccccccc--------
Confidence 55555555321110 001113455555666655555543221 1233344555555555555444322
Q ss_pred CCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920 269 KLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 269 ~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
.+...+..++....|+|+.|.+.+|.+..-.......+....|.|+.|.+++|.
T Consensus 256 --------------------------~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 256 --------------------------EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred --------------------------ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 455556666666688999999998832221111222222447999999999987
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.71 E-value=3.4e-10 Score=106.23 Aligned_cols=307 Identities=16% Similarity=0.121 Sum_probs=177.1
Q ss_pred CccEEEEeCCcCcc---CcccccCCCCCCeeEeeccC-CCC--cccc-cCCCCCcEEEccCC-CCccc--chhhhCCCCC
Q 037920 123 QVRVINLTNINLMS---LPSSLGLLSNLRTLSLDNCK-LLD--ITVV-RDLKKLEILCLRGS-NIKML--PIEVSELARL 192 (505)
Q Consensus 123 ~L~~L~l~~~~~~~---l~~~l~~l~~L~~L~L~~~~-l~~--~~~i-~~l~~L~~L~l~~~-~l~~l--p~~i~~l~~L 192 (505)
.|+.|.++++.-.. +-....+++++++|.+.+|. +++ ...+ ..+++|++|++..| .++.. ......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46667777664221 33344567777777777777 444 2333 35677888888775 56533 2234567888
Q ss_pred CEEeeeCCCCCCccC-hhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecc-cCCCCCCCC---CC
Q 037920 193 RLLGLRDCRELEVIP-ANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIK-DVNTLPRGL---FF 267 (505)
Q Consensus 193 ~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~l~~~~---~~ 267 (505)
++|+++.|..+..-. ......+..++++...+|.-.... .+...-..+..+..+++..+ .+++..-+. ..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le-----~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE-----ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH-----HHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 888888877655411 111345556777766665432211 11111122333445554432 233222111 14
Q ss_pred CCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCC
Q 037920 268 PKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNH 347 (505)
Q Consensus 268 ~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~ 347 (505)
..|+.+...... ...-....++....++|+.|.+..| ...+.........+++.|+.+++..|
T Consensus 294 ~~lq~l~~s~~t---------------~~~d~~l~aLg~~~~~L~~l~l~~c--~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 294 HALQVLCYSSCT---------------DITDEVLWALGQHCHNLQVLELSGC--QQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hHhhhhcccCCC---------------CCchHHHHHHhcCCCceEEEecccc--chhhhhhhhhhhcCChhhhhhccccc
Confidence 455555543211 1111223445666889999999999 55544444334477899999999998
Q ss_pred CCCCccccccccchhcchhhhhhhhcccccccccccccccccccccccc-ccccccccceeeccCccccccccccEEEEc
Q 037920 348 PPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIK 426 (505)
Q Consensus 348 ~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~ 426 (505)
.-.++..|.++. ..+|.|++|.++.| -+++-+.-.+... ......|+.+++.
T Consensus 357 ~~~~d~tL~sls-----------------------~~C~~lr~lslshce~itD~gi~~l~~~----~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 357 GLITDGTLASLS-----------------------RNCPRLRVLSLSHCELITDEGIRHLSSS----SCSLEGLEVLELD 409 (483)
T ss_pred ceehhhhHhhhc-----------------------cCCchhccCChhhhhhhhhhhhhhhhhc----cccccccceeeec
Confidence 744433333332 46899999999988 5555422222222 4467789999999
Q ss_pred cccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceeccc
Q 037920 427 NCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINR 487 (505)
Q Consensus 427 ~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~ 487 (505)
+|+.+++- .++ .+..+++|+.+++.+|....+=..-+ -..++|+++.....+
T Consensus 410 n~p~i~d~----~Le----~l~~c~~Leri~l~~~q~vtk~~i~~-~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 410 NCPLITDA----TLE----HLSICRNLERIELIDCQDVTKEAISR-FATHLPNIKVHAYFA 461 (483)
T ss_pred CCCCchHH----HHH----HHhhCcccceeeeechhhhhhhhhHH-HHhhCccceehhhcc
Confidence 99988744 222 25678999999999999884321100 144567766655443
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=6.1e-09 Score=93.68 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=44.1
Q ss_pred hhHHHHhcceeEEeecCCCCCCcc-hhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccc
Q 037920 302 DGLIVQLQGIEDLGLSKLPEQDVD-YFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFV 380 (505)
Q Consensus 302 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~ 380 (505)
..+...+++|.+|+|++| ..++ .+...+ -.++.|++|.++.|-.+... .+-
T Consensus 306 ~tL~~rcp~l~~LDLSD~--v~l~~~~~~~~--~kf~~L~~lSlsRCY~i~p~------------------------~~~ 357 (419)
T KOG2120|consen 306 STLVRRCPNLVHLDLSDS--VMLKNDCFQEF--FKFNYLQHLSLSRCYDIIPE------------------------TLL 357 (419)
T ss_pred HHHHHhCCceeeeccccc--cccCchHHHHH--HhcchheeeehhhhcCCChH------------------------Hee
Confidence 445666889999999887 4433 233333 56889999999888643322 222
Q ss_pred cccccccccccccccc
Q 037920 381 EKVTLPKLENLELDSI 396 (505)
Q Consensus 381 ~~~~~~~L~~L~l~~~ 396 (505)
.....|+|.+|++.+|
T Consensus 358 ~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 358 ELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeccCcceEEEEeccc
Confidence 3336788888888777
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.49 E-value=2.9e-08 Score=91.45 Aligned_cols=183 Identities=17% Similarity=0.160 Sum_probs=117.5
Q ss_pred ccCCCcEEEecCCCC--ccCCCC----CCCCCccEEEeeecCCCCccccChh-------------HHhCCCCccEEEEeC
Q 037920 71 AIKLYTSIVLHDIRT--NLLPEV----VESPQLKLLFICADQESSSLTIPNK-------------FFERMMQVRVINLTN 131 (505)
Q Consensus 71 ~~~~l~~l~l~~~~~--~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~-------------~~~~l~~L~~L~l~~ 131 (505)
.+++++.++|++|.+ ..++.. .++..|+.|.+ .++-++..... ....-+.||++....
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L---~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL---NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh---hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 455788888888887 233321 26788888888 44433322111 123457788888888
Q ss_pred CcCcc-----CcccccCCCCCCeeEeeccCCCC--c----ccccCCCCCcEEEccCCCCc-----ccchhhhCCCCCCEE
Q 037920 132 INLMS-----LPSSLGLLSNLRTLSLDNCKLLD--I----TVVRDLKKLEILCLRGSNIK-----MLPIEVSELARLRLL 195 (505)
Q Consensus 132 ~~~~~-----l~~~l~~l~~L~~L~L~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L 195 (505)
|.+.. +...+...+.|+.+.+..|.|.. . ..+..+++|+.||+..|.++ .+...+..+++|+.|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 87664 33456667888888888888665 2 56677888888888888665 334456677788888
Q ss_pred eeeCCCCCCc----cChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC
Q 037920 196 GLRDCRELEV----IPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN 259 (505)
Q Consensus 196 ~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 259 (505)
++++|..-.. +....-...|+|+++.+.+|.++.... ..+...+...+.|+.|++++|.+.
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~---~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA---LALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH---HHHHHHHhcchhhHHhcCCccccc
Confidence 8888754322 222212346788888888887754321 233345566788888888888774
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=5.1e-09 Score=94.20 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=20.6
Q ss_pred ccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920 414 NNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE 462 (505)
Q Consensus 414 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 462 (505)
+..|+.|++|.++.|+.|- ++..-+ ....|+|.+|++.+|-
T Consensus 334 ~~kf~~L~~lSlsRCY~i~----p~~~~~----l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYDII----PETLLE----LNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHhcchheeeehhhhcCCC----hHHeee----eccCcceEEEEecccc
Confidence 4556666666666666443 222211 2344566666655553
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=5.8e-07 Score=94.49 Aligned_cols=104 Identities=26% Similarity=0.324 Sum_probs=82.9
Q ss_pred CCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCc-ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEe
Q 037920 146 NLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIK-MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI 222 (505)
Q Consensus 146 ~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 222 (505)
.++.|+|++|.+.+ |..++++++|+.|++++|++. .+|..++.+++|+.|++++|...+.+|.. ++.+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47788888888876 678888899999999988887 67878888999999999886666677776 788899999999
Q ss_pred eCCCCCCchhhhhccccccccCC-CCcCEEEeeccc
Q 037920 223 GYNSFGKWEVEMEGVKNASLHEL-KHLTSLELHIKD 257 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 257 (505)
++|.+ .+.+|..+..+ .++..+++.+|.
T Consensus 498 s~N~l-------~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSL-------SGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcc-------cccCChHHhhccccCceEEecCCc
Confidence 88877 66777777653 456677777665
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.3e-07 Score=65.38 Aligned_cols=47 Identities=34% Similarity=0.526 Sum_probs=19.2
Q ss_pred CccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeecc
Q 037920 109 SSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNC 155 (505)
Q Consensus 109 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~ 155 (505)
.+..++..+|.++++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus 12 ~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 12 KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 333444434444444444444444444332 23344444444444433
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=2.4e-08 Score=100.11 Aligned_cols=187 Identities=25% Similarity=0.301 Sum_probs=106.6
Q ss_pred cCCCcEEEecCCCCccCC-CCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCee
Q 037920 72 IKLYTSIVLHDIRTNLLP-EVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTL 150 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L 150 (505)
+..+..+.+..|.+..+. ....+++|..|++ +.+.+..+... +..+++|++|++++|.|+++ ..+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l---~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDL---YDNKIEKIENL-LSSLVNLQVLDLSFNKITKL-EGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeec---cccchhhcccc-hhhhhcchheeccccccccc-cchhhccchhhh
Confidence 444555556666665532 2446677777777 55555555442 25677777777777777766 335666667777
Q ss_pred EeeccCCCCcccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920 151 SLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK 229 (505)
Q Consensus 151 ~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 229 (505)
++.+|.+..+..+..+++|+.+++++|.+..+... ...+.+++.+.+.+ +.+..+.. +..+..+..+++..|.++.
T Consensus 146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 146 NLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred eeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhccccccee
Confidence 77777777766666677777777777777666432 46667777777766 33333322 2333334444555554433
Q ss_pred chhhhhccccccccCCC--CcCEEEeecccCCCCCCCCC-CCCCcEEEE
Q 037920 230 WEVEMEGVKNASLHELK--HLTSLELHIKDVNTLPRGLF-FPKLQRYKI 275 (505)
Q Consensus 230 ~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~l~~~~~-~~~L~~L~~ 275 (505)
.. .+..+. +|+.+++..+.+...+..+. +.++..+.+
T Consensus 223 ~~---------~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~ 262 (414)
T KOG0531|consen 223 LE---------GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDL 262 (414)
T ss_pred cc---------CcccchhHHHHHHhcccCccccccccccccccccccch
Confidence 21 122222 26777777777665532221 444444443
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=3.1e-08 Score=99.35 Aligned_cols=106 Identities=28% Similarity=0.371 Sum_probs=56.5
Q ss_pred hCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeee
Q 037920 119 ERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLR 198 (505)
Q Consensus 119 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 198 (505)
..+.+|..|++.+|.+.++...+..+++|++|++++|.|+.+..+..+..|+.|++.+|.++.+. .+..++.|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 44555666666666655554435555666666666666555555555555666666666555443 33445555555555
Q ss_pred CCCCCCccCh-hhhcCCCCccEEEeeCCCC
Q 037920 199 DCRELEVIPA-NVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 199 ~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 227 (505)
+ +.+..+.. . ...+.+++.+.+.+|.+
T Consensus 171 ~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 171 Y-NRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred c-chhhhhhhhh-hhhccchHHHhccCCch
Confidence 5 33333332 1 14455555555555544
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=5e-07 Score=63.62 Aligned_cols=58 Identities=31% Similarity=0.449 Sum_probs=45.8
Q ss_pred CCccEEEEeCCcCccCcc-cccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCC
Q 037920 122 MQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNI 179 (505)
Q Consensus 122 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l 179 (505)
++|++|++++|.++.+|. .+..+++|++|++++|.+.. +..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 467888888888888764 67788888888888888877 46778888888888888764
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=1.2e-06 Score=91.99 Aligned_cols=101 Identities=26% Similarity=0.409 Sum_probs=82.1
Q ss_pred CCcEEEccCCCCc-ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCC
Q 037920 168 KLEILCLRGSNIK-MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELK 246 (505)
Q Consensus 168 ~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 246 (505)
.++.|+++++.++ .+|..+.++++|+.|++++|...+.+|.. ++.+++|+.|++++|.+ .+.+|..+++++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~l-------sg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSF-------NGSIPESLGQLT 490 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCC-------CCCCchHHhcCC
Confidence 4788999999887 56888999999999999997666678876 89999999999999988 677888999999
Q ss_pred CcCEEEeecccCC-CCCCCCC--CCCCcEEEEE
Q 037920 247 HLTSLELHIKDVN-TLPRGLF--FPKLQRYKIH 276 (505)
Q Consensus 247 ~L~~L~l~~~~~~-~l~~~~~--~~~L~~L~~~ 276 (505)
+|+.|++++|.+. .+|..+. ..++..+.+.
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 9999999999886 6776643 2344455544
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=6.1e-07 Score=81.07 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=28.8
Q ss_pred cccccccccccccccccccccceeeccCccccccccccEEEEccccccccc
Q 037920 384 TLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEEL 434 (505)
Q Consensus 384 ~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i 434 (505)
.+|.+..|++..+++.+|..- ..+..||+|..|.+.+.|....+
T Consensus 222 ~~p~~~~LnL~~~~idswasv-------D~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASV-------DALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCcchhhhhcccccccHHHH-------HHHcCCchhheeeccCCcccccc
Confidence 567777777777777666221 11667778888877777755544
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.20 E-value=1.6e-08 Score=101.38 Aligned_cols=130 Identities=25% Similarity=0.315 Sum_probs=100.8
Q ss_pred CCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCC
Q 037920 122 MQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCR 201 (505)
Q Consensus 122 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 201 (505)
..|.+.++++|.+..+-.++.-++.|+.|+|+.|++.+...+..+++|++||+++|.++.+|.--..--+|+.|++++ +
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N 242 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-N 242 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecc-c
Confidence 457777888888877767788899999999999999998888999999999999999988874322223499999988 6
Q ss_pred CCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCC
Q 037920 202 ELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNT 260 (505)
Q Consensus 202 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 260 (505)
-++.+.. +.++++|+.|++++|-+.+... -.-+..+..|+.|++.+|.+..
T Consensus 243 ~l~tL~g--ie~LksL~~LDlsyNll~~hse------L~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 243 ALTTLRG--IENLKSLYGLDLSYNLLSEHSE------LEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HHHhhhh--HHhhhhhhccchhHhhhhcchh------hhHHHHHHHHHHHhhcCCcccc
Confidence 6666665 7899999999999887754321 2235667788889998887643
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.19 E-value=4e-06 Score=71.77 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=69.8
Q ss_pred CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc--ccccCCCCCCeeE
Q 037920 74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP--SSLGLLSNLRTLS 151 (505)
Q Consensus 74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~l~~l~~L~~L~ 151 (505)
....+++++|.+..++....++.|.+|.+ +++.+..+.+.+-..+++|..|.+.+|.+.++. ..+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll---~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLL---NNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEe---cCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45667777777777776667778888887 777777777666566777888888887777643 2355677777777
Q ss_pred eeccCCCC-----cccccCCCCCcEEEccC
Q 037920 152 LDNCKLLD-----ITVVRDLKKLEILCLRG 176 (505)
Q Consensus 152 L~~~~l~~-----~~~i~~l~~L~~L~l~~ 176 (505)
+-+|+++. .-.+.++++|++||+.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77777654 25566677777777655
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=3.3e-06 Score=54.53 Aligned_cols=37 Identities=35% Similarity=0.548 Sum_probs=18.8
Q ss_pred CccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC
Q 037920 123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD 159 (505)
Q Consensus 123 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~ 159 (505)
+|++|++++|.++++|+.+.++++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555545555555555555555444
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=1.7e-06 Score=90.73 Aligned_cols=136 Identities=23% Similarity=0.306 Sum_probs=90.5
Q ss_pred CCCccEEEEeCCcCc--cCccccc-CCCCCCeeEeeccCCCC--c-ccccCCCCCcEEEccCCCCcccchhhhCCCCCCE
Q 037920 121 MMQVRVINLTNINLM--SLPSSLG-LLSNLRTLSLDNCKLLD--I-TVVRDLKKLEILCLRGSNIKMLPIEVSELARLRL 194 (505)
Q Consensus 121 l~~L~~L~l~~~~~~--~l~~~l~-~l~~L~~L~L~~~~l~~--~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 194 (505)
-.+|+.|+++|...- ..|..++ .+|+|+.|.+.+-.+.. . .-..+++||..||+++++++.+ .+++++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 367888888886522 2444443 47889999888766554 2 4445788999999999988888 68888999999
Q ss_pred EeeeCCCCCCccC-hhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC
Q 037920 195 LGLRDCRELEVIP-ANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN 259 (505)
Q Consensus 195 L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 259 (505)
|.+.+ -.+.... -..+.++++|+.||++........ ......-+.-..+|+||.||++++.+.
T Consensus 200 L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccC-CCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCcchh
Confidence 98876 2222211 112678889999998865543322 012222334455888999998877654
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=1.2e-06 Score=92.00 Aligned_cols=125 Identities=20% Similarity=0.231 Sum_probs=70.9
Q ss_pred cCCCcEEEecCCCC--ccCC-CC-CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCC
Q 037920 72 IKLYTSIVLHDIRT--NLLP-EV-VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNL 147 (505)
Q Consensus 72 ~~~l~~l~l~~~~~--~~l~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L 147 (505)
.+++++|++++... ..-+ .. .-+|.|++|.+ .+.....+--..++.++++|+.||+|++.++.+ ..+++|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i--~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVI--SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEe--cCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 44677777766443 1111 11 16677777777 222222211223356677777777777777766 556777777
Q ss_pred CeeEeeccCCCC---cccccCCCCCcEEEccCCCCcccch-------hhhCCCCCCEEeeeC
Q 037920 148 RTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLPI-------EVSELARLRLLGLRD 199 (505)
Q Consensus 148 ~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~-------~i~~l~~L~~L~l~~ 199 (505)
+.|.+.+-.+.. +..+.+|++|+.||++......-+. .-..+|+||.|+.++
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 777776666554 4666677777777777653332211 112356666666665
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=1.6e-06 Score=78.46 Aligned_cols=198 Identities=16% Similarity=0.181 Sum_probs=113.0
Q ss_pred cCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC--CCCCCCcEEEEEEcceeecccccce
Q 037920 212 SNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG--LFFPKLQRYKIHIGGYYYAGVWRRE 289 (505)
Q Consensus 212 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~~~~~~~~~~~~~~~~ 289 (505)
...+.++++++.+|.+++|+. +...+.+||.|+.|++++|.+...-.. ....+|+.+.+.+...
T Consensus 68 ~~~~~v~elDL~~N~iSdWse-----I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L--------- 133 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSE-----IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL--------- 133 (418)
T ss_pred HHhhhhhhhhcccchhccHHH-----HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC---------
Confidence 356779999999999999865 334567899999999999987532211 2366777766643211
Q ss_pred EEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhh
Q 037920 290 LKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEI 369 (505)
Q Consensus 290 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~ 369 (505)
.......+...+|.+++|+++.|.......--... ..--+.+++|.+..|.. ....+.+
T Consensus 134 -------~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~-e~~s~~v~tlh~~~c~~------------~~w~~~~- 192 (418)
T KOG2982|consen 134 -------SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI-EDWSTEVLTLHQLPCLE------------QLWLNKN- 192 (418)
T ss_pred -------Chhhhhhhhhcchhhhhhhhccchhhhhccccccc-cccchhhhhhhcCCcHH------------HHHHHHH-
Confidence 11122334444677777777765111110000000 01123555555555530 0000000
Q ss_pred hhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceeccccccccccccc
Q 037920 370 ILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVI 449 (505)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~ 449 (505)
.-...||++..+.+..|.++.. ..|.+...+|.+--|.+.... |.+|...+ .+..
T Consensus 193 ----------~l~r~Fpnv~sv~v~e~PlK~~-------s~ek~se~~p~~~~LnL~~~~-idswasvD-------~Ln~ 247 (418)
T KOG2982|consen 193 ----------KLSRIFPNVNSVFVCEGPLKTE-------SSEKGSEPFPSLSCLNLGANN-IDSWASVD-------ALNG 247 (418)
T ss_pred ----------hHHhhcccchheeeecCcccch-------hhcccCCCCCcchhhhhcccc-cccHHHHH-------HHcC
Confidence 1112588888888877766655 455557777777777776554 44442222 2457
Q ss_pred ccccccccccCccccccccc
Q 037920 450 FPQLQYLKMDDLEKLRNFCT 469 (505)
Q Consensus 450 ~p~L~~L~l~~~~~L~~~~~ 469 (505)
||.|..|.+.+.|-+..+..
T Consensus 248 f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 248 FPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred CchhheeeccCCcccccccC
Confidence 89999999999887666543
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=4.2e-05 Score=74.27 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=19.4
Q ss_pred cceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCC
Q 037920 309 QGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNH 347 (505)
Q Consensus 309 ~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~ 347 (505)
++|+.|.+.+| .. ...|..+ ..+|+.|.++.+
T Consensus 156 sSLk~L~Is~c--~~-i~LP~~L----P~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGC--SN-IILPEKL----PESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCC--Cc-ccCcccc----cccCcEEEeccc
Confidence 57788888777 32 2334333 357777777664
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.6e-05 Score=51.29 Aligned_cols=37 Identities=32% Similarity=0.431 Sum_probs=18.9
Q ss_pred CCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCccc
Q 037920 146 NLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKML 182 (505)
Q Consensus 146 ~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~l 182 (505)
+|++|++++|.+.+ ++.++++++|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555 33355555555555555555544
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=5.2e-05 Score=73.62 Aligned_cols=133 Identities=16% Similarity=0.318 Sum_probs=85.0
Q ss_pred ccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCC-cCccCcccccCCCCCCe
Q 037920 71 AIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNI-NLMSLPSSLGLLSNLRT 149 (505)
Q Consensus 71 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~l~~~l~~l~~L~~ 149 (505)
.+.++++|++++|.+.++|. -..+|++|.+ .++.....+|..+ ..+|+.|++++| .+..+|+ +|+.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~L--snc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--LPNELTEITI--ENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--CCCCCcEEEc--cCCCCcccCCchh---hhhhhheEccCccccccccc------ccce
Confidence 45789999999999998884 3347999999 5566667777644 468999999998 5666664 4677
Q ss_pred eEeeccCCCCcccccCC-CCCcEEEccCCC-C--cccchhhhCC-CCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeC
Q 037920 150 LSLDNCKLLDITVVRDL-KKLEILCLRGSN-I--KMLPIEVSEL-ARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGY 224 (505)
Q Consensus 150 L~L~~~~l~~~~~i~~l-~~L~~L~l~~~~-l--~~lp~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 224 (505)
|++..+.... +..+ .+|+.|.+.+++ . ..+|. .+ ++|++|.+.+|... .+|.. + ..+|+.|.++.
T Consensus 117 L~L~~n~~~~---L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~-L--P~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATDS---IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEK-L--PESLQSITLHI 186 (426)
T ss_pred EEeCCCCCcc---cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccc-c--cccCcEEEecc
Confidence 7776544332 2222 256667664432 1 11111 12 57888888886643 23432 2 25788888876
Q ss_pred CC
Q 037920 225 NS 226 (505)
Q Consensus 225 ~~ 226 (505)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 53
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=2.9e-05 Score=66.56 Aligned_cols=103 Identities=19% Similarity=0.279 Sum_probs=49.4
Q ss_pred CCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhC-CCCCCEEeeeCCCCCCccCh-hhhcCCCCccEEEeeC
Q 037920 147 LRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSE-LARLRLLGLRDCRELEVIPA-NVLSNLSHLEELYIGY 224 (505)
Q Consensus 147 L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~ 224 (505)
...++|++|.+.....+..++.|.+|.+.+|+|+.+.+.+.. +++|+.|.+.+ +.+..+.. ..+..+|.|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecC
Confidence 444455555544444455555555555555555555333333 34555555555 22222211 0034555666666555
Q ss_pred CCCCCchhhhhccccccccCCCCcCEEEee
Q 037920 225 NSFGKWEVEMEGVKNASLHELKHLTSLELH 254 (505)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 254 (505)
|..... .+.--..+..+++|+.||+.
T Consensus 123 Npv~~k----~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 123 NPVEHK----KNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred Cchhcc----cCceeEEEEecCcceEeehh
Confidence 554332 11222345566666666654
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.74 E-value=2.9e-05 Score=69.55 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=18.0
Q ss_pred hcceeEEeecCCCCC--CcchhhhhhhccCCCCccEEEEeCCC
Q 037920 308 LQGIEDLGLSKLPEQ--DVDYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 308 ~~~L~~L~l~~~~~~--~~~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
+++|+.|+|.+|... +...+...+ ..++.|++|.+.+|-
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al--~~W~~lrEL~lnDCl 253 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADAL--CEWNLLRELRLNDCL 253 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHh--cccchhhhccccchh
Confidence 455666666555111 112222222 345556666666654
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.59 E-value=4.6e-06 Score=66.82 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=71.4
Q ss_pred CCCcEEEecCCCCccCCC----CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCC
Q 037920 73 KLYTSIVLHDIRTNLLPE----VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLR 148 (505)
Q Consensus 73 ~~l~~l~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~ 148 (505)
.....+++++|.+-.++. ......|...++ .++...++|+.+-.+++.++.+++.+|.+.++|.++..++.||
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~l---s~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISL---SDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEec---ccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence 345566777776644432 235556666666 5666667777766666677777777777777777777777777
Q ss_pred eeEeeccCCCC-cccccCCCCCcEEEccCCCCcccc
Q 037920 149 TLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLP 183 (505)
Q Consensus 149 ~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp 183 (505)
.|+++.|++.. |..+..+.++-.|+..++.+..+|
T Consensus 104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred hcccccCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 77777777666 666666777777777666555554
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.57 E-value=1.5e-06 Score=87.69 Aligned_cols=106 Identities=24% Similarity=0.258 Sum_probs=84.2
Q ss_pred hCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccC-CCCCcEEEccCCCCcccchhhhCCCCCCEEee
Q 037920 119 ERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRD-LKKLEILCLRGSNIKMLPIEVSELARLRLLGL 197 (505)
Q Consensus 119 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~-l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 197 (505)
.-++.|+.|+|+.|++++.- .+..+++|++|+|++|.+..++.++. -.+|+.|.+++|.++.+. ++.++.+|+.|++
T Consensus 184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LDl 261 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLDL 261 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccch
Confidence 66889999999999999874 78999999999999999888433332 124999999999999884 8899999999999
Q ss_pred eCCCCCCccCh-hhhcCCCCccEEEeeCCCC
Q 037920 198 RDCRELEVIPA-NVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 198 ~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 227 (505)
+. +.+..... ..+..+..|.+|++.+|.+
T Consensus 262 sy-Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 262 SY-NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 98 44433221 1156778899999998865
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.30 E-value=3.1e-05 Score=62.14 Aligned_cols=88 Identities=19% Similarity=0.272 Sum_probs=50.6
Q ss_pred hCCCCccEEEEeCCcCccCcccccCC-CCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEe
Q 037920 119 ERMMQVRVINLTNINLMSLPSSLGLL-SNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLG 196 (505)
Q Consensus 119 ~~l~~L~~L~l~~~~~~~l~~~l~~l-~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 196 (505)
.+...|+..++++|.++++|+.+... +.+..|++.+|.+++ |..+..++.|+.|+++.|.+...|.-+..+.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 34455555666666666666655433 356666666666666 5556666666666666666666665555566666665
Q ss_pred eeCCCCCCccC
Q 037920 197 LRDCRELEVIP 207 (505)
Q Consensus 197 l~~~~~~~~~~ 207 (505)
..+ +....++
T Consensus 130 s~~-na~~eid 139 (177)
T KOG4579|consen 130 SPE-NARAEID 139 (177)
T ss_pred CCC-CccccCc
Confidence 554 3333343
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.24 E-value=0.00024 Score=63.83 Aligned_cols=185 Identities=16% Similarity=0.119 Sum_probs=104.9
Q ss_pred ccCCCcEEEecCCCCcc-----CCC-CCCCCCccEEEeeecCCCCc-cccCh------hHHhCCCCccEEEEeCCcCcc-
Q 037920 71 AIKLYTSIVLHDIRTNL-----LPE-VVESPQLKLLFICADQESSS-LTIPN------KFFERMMQVRVINLTNINLMS- 136 (505)
Q Consensus 71 ~~~~l~~l~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~~~~-~~~~~------~~~~~l~~L~~L~l~~~~~~~- 136 (505)
.+..+..+++++|.+.. +.. +.+-.+|+..++.+...... ..+++ ..+-+|++|+..++|+|.+..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 46778899999998822 111 12566777777621111111 11222 123578888888888887653
Q ss_pred Cc----ccccCCCCCCeeEeeccCCCCc--cccc-------------CCCCCcEEEccCCCCcccchh-----hhCCCCC
Q 037920 137 LP----SSLGLLSNLRTLSLDNCKLLDI--TVVR-------------DLKKLEILCLRGSNIKMLPIE-----VSELARL 192 (505)
Q Consensus 137 l~----~~l~~l~~L~~L~L~~~~l~~~--~~i~-------------~l~~L~~L~l~~~~l~~lp~~-----i~~l~~L 192 (505)
.| +.++..+.|.+|.+++|.+... .-|+ +-+.|+.....+|++...|.. +..-.+|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 33 3456677888888888876541 2222 346777777777776644322 2223567
Q ss_pred CEEeeeCCCCCCc----cChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccC
Q 037920 193 RLLGLRDCRELEV----IPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDV 258 (505)
Q Consensus 193 ~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 258 (505)
+.+.+..|..-.. +....+..+.+|+.|++..|.++.... ..+...++..+.|+.|.+..|-+
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS---~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS---RYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH---HHHHHHhcccchhhhccccchhh
Confidence 7777766321111 111113456677777777777655432 23344556666667666665543
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.15 E-value=0.00012 Score=75.36 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=24.0
Q ss_pred cccccccCcccccccccCCcccccCCCccceecccCccceee
Q 037920 453 LQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMR 494 (505)
Q Consensus 453 L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~~ 494 (505)
++.|.+..|...+.-... .....+..+..+.+.+|+.+...
T Consensus 403 l~~L~l~~~~~~t~~~l~-~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLR-CLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchH-HHhhhhhccccCCccCcccccch
Confidence 677777777765321110 00111677888888888776654
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=4.7e-05 Score=68.48 Aligned_cols=98 Identities=26% Similarity=0.238 Sum_probs=41.9
Q ss_pred CccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccc--hhhhCCCCCCEEeeeCC
Q 037920 123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLP--IEVSELARLRLLGLRDC 200 (505)
Q Consensus 123 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~ 200 (505)
+.+.|+..++.+.++ .....++.|+.|.|+-|.|+.+..+..|++|++|+|..|.|..+. ..+.++++|+.|-+..|
T Consensus 20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 334444444444432 112334444444444444444444444444555555444444332 23444455555544443
Q ss_pred CCCCccC----hhhhcCCCCccEEE
Q 037920 201 RELEVIP----ANVLSNLSHLEELY 221 (505)
Q Consensus 201 ~~~~~~~----~~~~~~l~~L~~L~ 221 (505)
...+.-+ ...+.-+|+|++|+
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 3333222 11234455555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.87 E-value=0.00035 Score=62.72 Aligned_cols=103 Identities=23% Similarity=0.350 Sum_probs=54.2
Q ss_pred CCCCccEEEEeCCcCccCcccccCCCCCCeeEeecc--CCCC--cccccCCCCCcEEEccCCCCccc--chhhhCCCCCC
Q 037920 120 RMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNC--KLLD--ITVVRDLKKLEILCLRGSNIKML--PIEVSELARLR 193 (505)
Q Consensus 120 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~--~l~~--~~~i~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~ 193 (505)
.+..|+.|++.+..++.+ ..+..+++|++|.++.| .+.. ....-++++|++|++++|+++.+ -..+..+++|.
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 445555555555555543 23445667777777777 3333 23333447777777777765532 12345566666
Q ss_pred EEeeeCCCCCC--ccChhhhcCCCCccEEEee
Q 037920 194 LLGLRDCRELE--VIPANVLSNLSHLEELYIG 223 (505)
Q Consensus 194 ~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~ 223 (505)
.|++..|.... ..-..++.-+++|.+|+-.
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 66666654222 1122224445666665543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.00066 Score=60.96 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=54.9
Q ss_pred hCCCCccEEEEeCC--cCcc-CcccccCCCCCCeeEeeccCCCC---cccccCCCCCcEEEccCCCCcccc----hhhhC
Q 037920 119 ERMMQVRVINLTNI--NLMS-LPSSLGLLSNLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLP----IEVSE 188 (505)
Q Consensus 119 ~~l~~L~~L~l~~~--~~~~-l~~~l~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp----~~i~~ 188 (505)
-.+++|+.|.++.| ++.. ++.....+++|++|++++|.+.. +..+..+.+|..|++.+|..+.+- ..+.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 45677777777777 3332 44445556888888888887665 456667788888888888666442 23455
Q ss_pred CCCCCEEeeeC
Q 037920 189 LARLRLLGLRD 199 (505)
Q Consensus 189 l~~L~~L~l~~ 199 (505)
+++|++|+-..
T Consensus 142 l~~L~~LD~~d 152 (260)
T KOG2739|consen 142 LPSLKYLDGCD 152 (260)
T ss_pred hhhhccccccc
Confidence 68888887655
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=7.2e-05 Score=67.37 Aligned_cols=105 Identities=28% Similarity=0.387 Sum_probs=74.8
Q ss_pred CCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccCh-hhhcCCCCccEEEe
Q 037920 144 LSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPA-NVLSNLSHLEELYI 222 (505)
Q Consensus 144 l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l 222 (505)
+.+.+.|+..+|.+.++....+++.|+.|.|+-|+|+.+. .+..+++|++|++.. +.+..+.. .-+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence 5667888899999888888888999999999999998884 578889999999988 44444432 11578888999988
Q ss_pred eCCCCCCchhhhhccccccccCCCCcCEEE
Q 037920 223 GYNSFGKWEVEMEGVKNASLHELKHLTSLE 252 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 252 (505)
..|....... ...--..+..+++|++||
T Consensus 96 ~ENPCc~~ag--~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAG--QNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccc--hhHHHHHHHHcccchhcc
Confidence 8775532211 111122455667777665
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.18 E-value=0.0011 Score=68.19 Aligned_cols=95 Identities=23% Similarity=0.358 Sum_probs=51.6
Q ss_pred cccccccccccc-ccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc-
Q 037920 385 LPKLENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE- 462 (505)
Q Consensus 385 ~~~L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~- 462 (505)
+|+|+.|.+.+| .+++-....+ ...+|+|++|++++|..+++- ++... ...+|+|+.|.+..+.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i-------~~~~~~L~~L~l~~c~~~~d~----~l~~~---~~~c~~l~~l~~~~~~~ 333 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSI-------AERCPSLRELDLSGCHGLTDS----GLEAL---LKNCPNLRELKLLSLNG 333 (482)
T ss_pred CCCcceEccCCCCccchhHHHHH-------HHhcCcccEEeeecCccchHH----HHHHH---HHhCcchhhhhhhhcCC
Confidence 667777776666 4544322211 555777888888877776422 12111 3346666665554443
Q ss_pred --cccccccCCcccccC-CCccceecccCccceee
Q 037920 463 --KLRNFCTGDVDILEF-PSLKELIINRCPEFLMR 494 (505)
Q Consensus 463 --~L~~~~~~~~~~~~~-~~L~~L~i~~C~~L~~~ 494 (505)
.++.....+ ..... ..+..+.+..||+++..
T Consensus 334 c~~l~~~~l~~-~~~~~~d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 334 CPSLTDLSLSG-LLTLTSDDLAELILRSCPKLTDL 367 (482)
T ss_pred CccHHHHHHHH-hhccCchhHhHHHHhcCCCcchh
Confidence 344332110 01122 26777888888887766
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.02 E-value=0.022 Score=46.62 Aligned_cols=104 Identities=19% Similarity=0.295 Sum_probs=38.0
Q ss_pred ChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccch-hhhCC
Q 037920 114 PNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPI-EVSEL 189 (505)
Q Consensus 114 ~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l 189 (505)
+...|.++.+|+.+.+.. .++.++ ..+..+++|+.+.+..+ +.. -..+..+.+++.+.+.. .+..++. .+..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 333445555555555543 233332 23444445555555442 333 13344454555555543 3333322 33345
Q ss_pred CCCCEEeeeCCCCCCccChhhhcCCCCccEEEee
Q 037920 190 ARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG 223 (505)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 223 (505)
++|+.+.+.. + +..++...+... +|+.+.+.
T Consensus 81 ~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 81 TNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTECEEEETT-T--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccCc-c-ccEEchhhhcCC-CceEEEEC
Confidence 5566665543 1 334443334444 55555544
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.00086 Score=57.81 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=52.4
Q ss_pred ccccccccccccc-ccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920 384 TLPKLENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE 462 (505)
Q Consensus 384 ~~~~L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 462 (505)
.+++++.|.+.+| .+.+|+.+.+ -+-.|+|+.|+|++|+.|++- ++. .+..+++|+.|.|.+++
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l-------~~~~~~L~~L~lsgC~rIT~~----GL~----~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERL-------GGLAPSLQDLDLSGCPRITDG----GLA----CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchhhhheeccccchhhHHHHHh-------cccccchheeeccCCCeechh----HHH----HHHHhhhhHHHHhcCch
Confidence 5888999999999 8888865432 335799999999999999843 332 24677999999999998
Q ss_pred cccc
Q 037920 463 KLRN 466 (505)
Q Consensus 463 ~L~~ 466 (505)
....
T Consensus 188 ~v~~ 191 (221)
T KOG3864|consen 188 YVAN 191 (221)
T ss_pred hhhc
Confidence 7643
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.93 E-value=0.025 Score=46.32 Aligned_cols=115 Identities=17% Similarity=0.262 Sum_probs=51.9
Q ss_pred CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEeeccCCCC--cccccCCCCC
Q 037920 93 ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKL 169 (505)
Q Consensus 93 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L 169 (505)
.+++|+.+.+ .. ....++...|..+.+|+.+.+..+ +..++. .+..++.|+++.+.. .+.. ...+..+++|
T Consensus 10 ~~~~l~~i~~---~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 10 NCSNLESITF---PN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp T-TT--EEEE---TS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred CCCCCCEEEE---CC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 5667777776 32 345566666777777777777664 555433 456666777777754 3333 2455567778
Q ss_pred cEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCc
Q 037920 170 EILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHL 217 (505)
Q Consensus 170 ~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 217 (505)
+.+++..+ +..++ ..+.+. +|+.+.+.. .+..++...+..+++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 87777653 55553 345555 777776643 3344554445555544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.59 E-value=0.006 Score=32.62 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=15.0
Q ss_pred CccEEEEeCCcCccCcccccC
Q 037920 123 QVRVINLTNINLMSLPSSLGL 143 (505)
Q Consensus 123 ~L~~L~l~~~~~~~l~~~l~~ 143 (505)
+|++||+++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477788888877777766544
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.33 E-value=0.0065 Score=32.46 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=12.6
Q ss_pred CCcEEEccCCCCcccchhhhC
Q 037920 168 KLEILCLRGSNIKMLPIEVSE 188 (505)
Q Consensus 168 ~L~~L~l~~~~l~~lp~~i~~ 188 (505)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.54 E-value=0.0058 Score=52.85 Aligned_cols=69 Identities=16% Similarity=0.307 Sum_probs=53.8
Q ss_pred ccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecccCccc
Q 037920 414 NNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEF 491 (505)
Q Consensus 414 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L 491 (505)
+..++.++.|.+.+|..+.++.. +.+ ....|+|+.|+|++|+.+++..- +.+..+++|+.|.|++-|..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L-~~l------~~~~~~L~~L~lsgC~rIT~~GL--~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCL-ERL------GGLAPSLQDLDLSGCPRITDGGL--ACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHH-HHh------cccccchheeeccCCCeechhHH--HHHHHhhhhHHHHhcCchhh
Confidence 77889999999999998886642 222 22579999999999999977532 24778999999999997543
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.67 E-value=0.046 Score=27.05 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=6.5
Q ss_pred CCcEEEccCCCCcccc
Q 037920 168 KLEILCLRGSNIKMLP 183 (505)
Q Consensus 168 ~L~~L~l~~~~l~~lp 183 (505)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.39 E-value=0.053 Score=26.82 Aligned_cols=16 Identities=44% Similarity=0.754 Sum_probs=7.4
Q ss_pred CccEEEEeCCcCccCc
Q 037920 123 QVRVINLTNINLMSLP 138 (505)
Q Consensus 123 ~L~~L~l~~~~~~~l~ 138 (505)
+|+.|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666665544
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.79 E-value=0.41 Score=26.51 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=13.9
Q ss_pred CCCCcEEEccCCCCcccchhh
Q 037920 166 LKKLEILCLRGSNIKMLPIEV 186 (505)
Q Consensus 166 l~~L~~L~l~~~~l~~lp~~i 186 (505)
+++|+.|++++|+++.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776543
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.79 E-value=0.41 Score=26.51 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=13.9
Q ss_pred CCCCcEEEccCCCCcccchhh
Q 037920 166 LKKLEILCLRGSNIKMLPIEV 186 (505)
Q Consensus 166 l~~L~~L~l~~~~l~~lp~~i 186 (505)
+++|+.|++++|+++.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776543
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.14 E-value=0.34 Score=26.96 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=12.3
Q ss_pred CCCccceecccCcccee
Q 037920 477 FPSLKELIINRCPEFLM 493 (505)
Q Consensus 477 ~~~L~~L~i~~C~~L~~ 493 (505)
+|.|+.|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46778888888877653
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.30 E-value=0.018 Score=50.95 Aligned_cols=60 Identities=5% Similarity=-0.024 Sum_probs=30.0
Q ss_pred hCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCC
Q 037920 119 ERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSN 178 (505)
Q Consensus 119 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~ 178 (505)
+.+..|..||++.+.+..+|..+..+..++.+++..|..+- |.+.+..+++++++..++.
T Consensus 62 s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 62 SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 33444444555555555555555555555555555544444 4555555555555554443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.50 E-value=0.059 Score=47.81 Aligned_cols=83 Identities=13% Similarity=0.148 Sum_probs=68.8
Q ss_pred hCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEee
Q 037920 119 ERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGL 197 (505)
Q Consensus 119 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 197 (505)
..+...++||++.+.+-.+-..++.++.|..|+++.+.+.. |.+.+.+..++.++...|+.+..|.+.++.+++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 45677888888888877777777888888888888888877 78888888888888888888888888888888888888
Q ss_pred eCCC
Q 037920 198 RDCR 201 (505)
Q Consensus 198 ~~~~ 201 (505)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 7754
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=73.69 E-value=0.029 Score=56.88 Aligned_cols=34 Identities=38% Similarity=0.458 Sum_probs=17.3
Q ss_pred CCeeEeeccCCCC--c----ccccCCCCCcEEEccCCCCc
Q 037920 147 LRTLSLDNCKLLD--I----TVVRDLKKLEILCLRGSNIK 180 (505)
Q Consensus 147 L~~L~L~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~ 180 (505)
+..|.|.+|.+.. . ..+.....|..|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 5555555555544 1 33344555555555555444
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.36 E-value=2.7 Score=23.37 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=13.4
Q ss_pred CCCcEEEccCCCCcccch
Q 037920 167 KKLEILCLRGSNIKMLPI 184 (505)
Q Consensus 167 ~~L~~L~l~~~~l~~lp~ 184 (505)
.+|+.|++++|+++.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367778888888887774
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.24 E-value=4 Score=21.89 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=7.0
Q ss_pred CCCcEEEccCCCCc
Q 037920 167 KKLEILCLRGSNIK 180 (505)
Q Consensus 167 ~~L~~L~l~~~~l~ 180 (505)
++|++|++++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666554
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=61.86 E-value=6.9 Score=21.78 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=11.0
Q ss_pred CCCCcEEEccCCCCccc
Q 037920 166 LKKLEILCLRGSNIKML 182 (505)
Q Consensus 166 l~~L~~L~l~~~~l~~l 182 (505)
+.+|+.|+++.|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35677777777766544
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.46 E-value=3.5 Score=41.75 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=19.5
Q ss_pred hcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCC
Q 037920 308 LQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNH 347 (505)
Q Consensus 308 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~ 347 (505)
.+.+..+.|++|.+..++.+.... +..|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~ssls--q~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLS--QIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHH--Hhcchhheeecccc
Confidence 455555556555333344443333 55555555555555
No 87
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=52.79 E-value=34 Score=26.04 Aligned_cols=42 Identities=5% Similarity=0.186 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhccccccccccccCcEEeehhhHHHHHHHH
Q 037920 5 RARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIA 46 (505)
Q Consensus 5 ~~~~~~~~~~Li~~~l~~~~~~~~~~~~~mHdli~dla~~~~ 46 (505)
.+.|.+|++.|++++|+...+.+..+.|.+-+.-.++.....
T Consensus 45 y~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle~y~ 86 (95)
T COG3432 45 YKRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLEKYS 86 (95)
T ss_pred HHHHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHHHHHH
Confidence 468999999999999888877655667888888877755443
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=51.77 E-value=0.27 Score=49.92 Aligned_cols=132 Identities=24% Similarity=0.235 Sum_probs=61.0
Q ss_pred CCccEEEEeCCcCcc-----CcccccCCCCCCeeEeeccCCCC------ccccc----CCCCCcEEEccCCCCcc-----
Q 037920 122 MQVRVINLTNINLMS-----LPSSLGLLSNLRTLSLDNCKLLD------ITVVR----DLKKLEILCLRGSNIKM----- 181 (505)
Q Consensus 122 ~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~l~~------~~~i~----~l~~L~~L~l~~~~l~~----- 181 (505)
..+++|++..|.++. +...+....+++.++++.|.+.. +..+. ...++++|++++|.++.
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 345555555555443 33344445556666666665422 12222 34556666666665441
Q ss_pred cchhhhCCCC-CCEEeeeCCCCCCcc-----ChhhhcCC-CCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEee
Q 037920 182 LPIEVSELAR-LRLLGLRDCRELEVI-----PANVLSNL-SHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH 254 (505)
Q Consensus 182 lp~~i~~l~~-L~~L~l~~~~~~~~~-----~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 254 (505)
+...+...+. +..+++.. +.+++. ... +..+ ..++++++..|.+.+... ..+.+.+..++.++.+.++
T Consensus 224 l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~~---~~L~~~l~~~~~l~~l~l~ 298 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLAS-NKLGDVGVEKLLPC-LSVLSETLRVLDLSRNSITEKGV---RDLAEVLVSCRQLEELSLS 298 (478)
T ss_pred HHHHHhccchhhHHHHHHh-cCcchHHHHHHHHH-hcccchhhhhhhhhcCCccccch---HHHHHHHhhhHHHHHhhcc
Confidence 1112333333 44455544 222221 111 2333 445666666666544321 2334445555566666666
Q ss_pred cccC
Q 037920 255 IKDV 258 (505)
Q Consensus 255 ~~~~ 258 (505)
.|.+
T Consensus 299 ~n~l 302 (478)
T KOG4308|consen 299 NNPL 302 (478)
T ss_pred cCcc
Confidence 5554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.76 E-value=7 Score=39.66 Aligned_cols=51 Identities=20% Similarity=0.131 Sum_probs=36.9
Q ss_pred CccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCC
Q 037920 297 KIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPP 349 (505)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 349 (505)
.+.....+....|+|..|+|++| ........++.+-+...|++|.+.+|+-
T Consensus 232 ~Ld~~sslsq~apklk~L~LS~N--~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 232 HLDALSSLSQIAPKLKTLDLSHN--HSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred chhhhhHHHHhcchhheeecccc--hhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 34445566677899999999998 4444444455445678899999999983
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=43.80 E-value=14 Score=20.80 Aligned_cols=13 Identities=54% Similarity=0.598 Sum_probs=6.1
Q ss_pred CCCeeEeeccCCC
Q 037920 146 NLRTLSLDNCKLL 158 (505)
Q Consensus 146 ~L~~L~L~~~~l~ 158 (505)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3444555544443
No 91
>PF14162 YozD: YozD-like protein
Probab=23.99 E-value=77 Score=20.78 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhccccccc
Q 037920 3 VARARVHALVHKLKASCMLLNH 24 (505)
Q Consensus 3 ~~~~~~~~~~~~Li~~~l~~~~ 24 (505)
+.|.+|+=.+++|+.|+++-..
T Consensus 9 DTEEIAefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 9 DTEEIAEFFYHELVKRGYVPTE 30 (57)
T ss_pred cHHHHHHHHHHHHHHccCCCcH
Confidence 4678899999999999998654
Done!