Query 037920
Match_columns 505
No_of_seqs 252 out of 3494
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 09:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o6v_A Internalin A; bacterial 100.0 4.9E-29 1.7E-33 253.5 24.3 343 70-489 43-386 (466)
2 4eco_A Uncharacterized protein 100.0 5.6E-29 1.9E-33 262.3 18.8 336 112-491 197-600 (636)
3 2z63_A TOLL-like receptor 4, v 100.0 3.7E-28 1.3E-32 253.7 23.2 161 62-227 18-189 (570)
4 4fmz_A Internalin; leucine ric 100.0 7.9E-28 2.7E-32 235.1 23.7 307 67-489 38-344 (347)
5 3t6q_A CD180 antigen; protein- 100.0 1.1E-27 3.9E-32 251.9 26.2 404 62-493 23-514 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-27 5.3E-32 250.9 26.5 140 62-206 22-168 (606)
7 4eco_A Uncharacterized protein 100.0 2.4E-28 8.1E-33 257.5 17.9 362 88-492 198-633 (636)
8 3rgz_A Protein brassinosteroid 100.0 3.3E-28 1.1E-32 262.2 18.6 85 384-489 630-715 (768)
9 2z81_A CD282 antigen, TOLL-lik 100.0 2E-27 7E-32 247.0 23.8 395 62-489 16-508 (549)
10 4ecn_A Leucine-rich repeat pro 100.0 1.5E-27 5.3E-32 256.0 22.1 334 113-491 440-840 (876)
11 4ecn_A Leucine-rich repeat pro 100.0 1E-26 3.5E-31 249.6 25.7 364 68-492 443-873 (876)
12 4fmz_A Internalin; leucine ric 99.9 2.3E-26 7.8E-31 224.7 25.1 288 63-462 56-344 (347)
13 3rgz_A Protein brassinosteroid 99.9 1.8E-27 6E-32 256.5 18.3 326 112-493 333-742 (768)
14 1o6v_A Internalin A; bacterial 99.9 2.6E-26 8.9E-31 233.4 25.9 329 62-462 57-386 (466)
15 2z7x_B TOLL-like receptor 1, v 99.9 5.8E-26 2E-30 234.4 28.3 122 73-201 21-149 (520)
16 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-26 4.3E-31 252.4 24.3 137 62-202 15-160 (844)
17 3vq2_A TLR4, TOLL-like recepto 99.9 6.3E-27 2.2E-31 246.2 21.3 192 75-278 13-214 (606)
18 3t6q_A CD180 antigen; protein- 99.9 1.3E-26 4.5E-31 243.8 23.3 382 70-489 102-558 (606)
19 2z81_A CD282 antigen, TOLL-lik 99.9 3.5E-26 1.2E-30 237.6 25.6 158 69-230 46-211 (549)
20 2z63_A TOLL-like receptor 4, v 99.9 4.8E-26 1.6E-30 237.8 25.7 384 69-489 48-529 (570)
21 3o6n_A APL1; leucine-rich repe 99.9 4.6E-26 1.6E-30 226.3 21.9 302 71-462 43-350 (390)
22 3o6n_A APL1; leucine-rich repe 99.9 5.8E-26 2E-30 225.5 22.1 306 91-489 41-350 (390)
23 3v47_A TOLL-like receptor 5B a 99.9 2E-25 6.8E-30 226.4 25.7 368 62-488 21-405 (455)
24 2z7x_B TOLL-like receptor 1, v 99.9 5.6E-26 1.9E-30 234.5 21.4 370 76-489 3-479 (520)
25 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-25 6.6E-30 238.1 25.3 164 62-230 15-186 (680)
26 2id5_A Lingo-1, leucine rich r 99.9 4.4E-25 1.5E-29 225.2 25.2 311 76-462 14-331 (477)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.8E-25 3E-29 227.5 27.2 373 74-489 32-508 (562)
28 3bz5_A Internalin-J, INLJ; leu 99.9 5.3E-25 1.8E-29 222.2 24.8 313 68-462 37-350 (457)
29 3v47_A TOLL-like receptor 5B a 99.9 9.7E-26 3.3E-30 228.7 18.7 321 68-462 49-406 (455)
30 2id5_A Lingo-1, leucine rich r 99.9 1.1E-24 3.8E-29 222.2 26.5 301 62-429 22-331 (477)
31 1ziw_A TOLL-like receptor 3; i 99.9 7.4E-25 2.5E-29 233.6 25.7 388 69-488 45-514 (680)
32 3oja_B Anopheles plasmodium-re 99.9 2.6E-25 8.9E-30 232.9 21.5 301 72-462 50-356 (597)
33 3oja_B Anopheles plasmodium-re 99.9 3.3E-25 1.1E-29 232.1 21.7 305 92-489 48-356 (597)
34 1xku_A Decorin; proteoglycan, 99.9 2.6E-24 8.8E-29 208.6 25.3 295 96-488 32-329 (330)
35 2ft3_A Biglycan; proteoglycan, 99.9 8.5E-25 2.9E-29 212.2 20.1 296 96-490 34-332 (332)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-24 5.5E-29 225.5 21.5 356 62-462 42-508 (562)
37 3j0a_A TOLL-like receptor 5; m 99.9 2.5E-24 8.5E-29 234.4 22.1 172 76-259 7-187 (844)
38 4g8a_A TOLL-like receptor 4; l 99.9 2.4E-23 8.4E-28 219.9 25.9 141 62-207 42-189 (635)
39 3bz5_A Internalin-J, INLJ; leu 99.9 4.5E-23 1.5E-27 208.2 24.1 303 92-488 39-349 (457)
40 1jl5_A Outer protein YOPM; leu 99.9 1.1E-22 3.7E-27 205.1 25.2 277 72-429 90-368 (454)
41 2z80_A TOLL-like receptor 2, v 99.9 7E-23 2.4E-27 200.4 18.5 278 71-429 29-312 (353)
42 4fcg_A Uncharacterized protein 99.9 1.2E-22 4.1E-27 196.3 18.9 176 120-348 79-264 (328)
43 4fcg_A Uncharacterized protein 99.9 2.4E-22 8.2E-27 194.1 19.7 220 72-348 80-312 (328)
44 1xku_A Decorin; proteoglycan, 99.9 1.2E-21 4.2E-26 189.7 23.3 294 74-461 32-329 (330)
45 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-22 3.9E-27 195.2 15.3 220 73-348 50-279 (313)
46 2ft3_A Biglycan; proteoglycan, 99.9 4.8E-22 1.6E-26 192.8 18.8 293 74-462 34-331 (332)
47 1jl5_A Outer protein YOPM; leu 99.9 3.8E-21 1.3E-25 193.9 25.3 326 73-493 71-410 (454)
48 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-21 5.5E-26 206.0 23.4 149 76-230 34-188 (635)
49 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-22 5.6E-27 194.1 12.7 153 95-259 50-210 (313)
50 3g06_A SSPH2 (leucine-rich rep 99.9 3.5E-20 1.2E-24 192.6 25.8 256 73-429 40-295 (622)
51 2z66_A Variable lymphocyte rec 99.9 3.8E-21 1.3E-25 184.2 15.8 175 76-261 10-190 (306)
52 2z80_A TOLL-like receptor 2, v 99.9 6E-21 2.1E-25 186.6 16.0 257 62-348 42-312 (353)
53 1z7x_W Ribonuclease inhibitor; 99.9 2.9E-23 1E-27 210.8 -0.5 342 70-462 25-409 (461)
54 1ozn_A Reticulon 4 receptor; N 99.9 4.6E-21 1.6E-25 181.6 14.1 205 63-279 23-236 (285)
55 3g06_A SSPH2 (leucine-rich rep 99.9 5.5E-20 1.9E-24 191.2 23.3 256 95-462 40-295 (622)
56 3zyi_A Leucine-rich repeat-con 99.8 3E-20 1E-24 188.0 19.9 241 74-348 55-301 (452)
57 1ozn_A Reticulon 4 receptor; N 99.8 4.1E-20 1.4E-24 175.0 18.8 216 76-348 14-236 (285)
58 3zyj_A Leucine-rich repeat-con 99.8 3.3E-20 1.1E-24 187.0 18.7 241 74-348 44-290 (440)
59 3o53_A Protein LRIM1, AGAP0063 99.8 9.7E-22 3.3E-26 189.2 5.9 285 106-495 18-303 (317)
60 2z66_A Variable lymphocyte rec 99.8 3.4E-20 1.2E-24 177.5 16.5 230 63-348 19-259 (306)
61 3zyj_A Leucine-rich repeat-con 99.8 1.7E-19 5.8E-24 181.8 21.3 243 96-429 44-290 (440)
62 3zyi_A Leucine-rich repeat-con 99.8 1.3E-19 4.6E-24 183.1 18.8 228 62-320 65-301 (452)
63 3ogk_B Coronatine-insensitive 99.8 1.3E-21 4.6E-26 205.0 -0.2 195 71-276 110-326 (592)
64 3o53_A Protein LRIM1, AGAP0063 99.8 2.4E-20 8.1E-25 179.5 8.3 215 94-348 33-248 (317)
65 1p9a_G Platelet glycoprotein I 99.8 7.6E-19 2.6E-23 166.4 18.1 199 70-281 7-208 (290)
66 1h6u_A Internalin H; cell adhe 99.8 1.5E-18 5E-23 166.0 19.5 195 68-281 36-230 (308)
67 2o6q_A Variable lymphocyte rec 99.8 1.7E-18 5.7E-23 162.5 19.1 198 72-281 15-218 (270)
68 1z7x_W Ribonuclease inhibitor; 99.8 1.3E-21 4.5E-26 198.6 -2.6 343 118-489 24-409 (461)
69 1wwl_A Monocyte differentiatio 99.8 3.1E-20 1.1E-24 178.2 6.6 246 93-429 41-307 (312)
70 3ogk_B Coronatine-insensitive 99.8 1.1E-19 3.9E-24 190.3 10.5 87 384-487 461-547 (592)
71 1wwl_A Monocyte differentiatio 99.8 2.1E-19 7.3E-24 172.4 9.9 241 72-348 42-307 (312)
72 2xwt_C Thyrotropin receptor; s 99.8 3.3E-18 1.1E-22 157.4 16.6 199 63-275 23-233 (239)
73 1p9a_G Platelet glycoprotein I 99.8 2.5E-18 8.5E-23 162.9 15.8 198 93-348 8-206 (290)
74 2z62_A TOLL-like receptor 4, v 99.8 4.1E-18 1.4E-22 160.5 16.2 205 63-280 19-236 (276)
75 2o6q_A Variable lymphocyte rec 99.8 1.4E-17 4.9E-22 156.2 18.8 186 63-260 28-219 (270)
76 2p1m_B Transport inhibitor res 99.8 1.1E-19 3.7E-24 190.5 4.7 152 71-225 64-245 (594)
77 3oja_A Leucine-rich immune mol 99.8 1.1E-18 3.7E-23 177.7 11.8 212 72-348 33-248 (487)
78 2p1m_B Transport inhibitor res 99.8 4.8E-20 1.7E-24 193.2 1.6 128 71-200 103-245 (594)
79 2z62_A TOLL-like receptor 4, v 99.8 9.6E-18 3.3E-22 157.9 17.0 215 77-348 11-235 (276)
80 3rfs_A Internalin B, repeat mo 99.8 3E-18 1E-22 160.9 12.8 179 67-258 35-217 (272)
81 3rfs_A Internalin B, repeat mo 99.8 1.5E-17 5.1E-22 156.2 17.4 193 74-280 20-217 (272)
82 1h6u_A Internalin H; cell adhe 99.8 1.8E-17 6.1E-22 158.5 18.1 183 63-264 53-235 (308)
83 2xwt_C Thyrotropin receptor; s 99.8 9.4E-18 3.2E-22 154.4 14.6 204 85-348 23-237 (239)
84 1h6t_A Internalin B; cell adhe 99.7 2E-17 6.9E-22 156.7 16.3 177 68-263 41-217 (291)
85 3m19_A Variable lymphocyte rec 99.7 4.8E-17 1.6E-21 150.8 17.3 176 73-260 14-193 (251)
86 3oja_A Leucine-rich immune mol 99.7 2.6E-18 9E-23 174.8 8.3 177 68-265 53-233 (487)
87 4glp_A Monocyte differentiatio 99.7 1.3E-17 4.3E-22 159.9 10.3 197 121-348 90-305 (310)
88 2ast_B S-phase kinase-associat 99.7 1.6E-17 5.4E-22 161.1 9.7 128 122-256 70-205 (336)
89 1h6t_A Internalin B; cell adhe 99.7 2.6E-16 9E-21 149.0 16.3 183 78-279 29-211 (291)
90 2ast_B S-phase kinase-associat 99.7 3.4E-17 1.2E-21 158.8 10.1 226 122-428 47-282 (336)
91 1m9s_A Internalin B; cell inva 99.7 2.4E-16 8.2E-21 163.6 16.4 178 67-263 37-214 (605)
92 4ay9_X Follicle-stimulating ho 99.7 1.6E-15 5.5E-20 147.7 19.6 239 125-460 12-255 (350)
93 2ca6_A RAN GTPase-activating p 99.7 6.5E-18 2.2E-22 167.2 2.3 137 119-259 29-200 (386)
94 3goz_A Leucine-rich repeat-con 99.7 5.8E-17 2E-21 158.8 7.0 138 118-259 18-180 (362)
95 4ay9_X Follicle-stimulating ho 99.7 2.3E-15 7.7E-20 146.7 17.6 225 63-346 21-255 (350)
96 4ezg_A Putative uncharacterize 99.7 8.8E-16 3E-20 136.6 13.2 149 70-227 41-193 (197)
97 2ca6_A RAN GTPase-activating p 99.6 6.3E-17 2.2E-21 160.0 5.9 236 70-348 29-314 (386)
98 4glp_A Monocyte differentiatio 99.6 6.7E-16 2.3E-20 147.8 12.3 193 72-277 90-303 (310)
99 2o6s_A Variable lymphocyte rec 99.6 1.1E-15 3.8E-20 137.3 13.0 170 76-264 10-184 (208)
100 3m19_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 138.1 16.8 162 63-229 26-193 (251)
101 4ezg_A Putative uncharacterize 99.6 1.2E-15 4.1E-20 135.7 13.0 150 93-259 42-194 (197)
102 1xeu_A Internalin C; cellular 99.6 3E-16 1E-20 146.3 8.6 171 72-262 18-188 (263)
103 1m9s_A Internalin B; cell inva 99.6 1.7E-15 5.7E-20 157.3 13.6 186 75-279 23-208 (605)
104 3goz_A Leucine-rich repeat-con 99.6 2.1E-16 7.3E-21 154.7 5.6 227 78-348 3-264 (362)
105 3e6j_A Variable lymphocyte rec 99.6 8E-15 2.7E-19 133.7 15.4 149 75-228 21-172 (229)
106 3cvr_A Invasion plasmid antige 99.6 1.5E-14 5.1E-19 148.6 17.8 161 73-265 59-226 (571)
107 1xeu_A Internalin C; cellular 99.6 5.9E-15 2E-19 137.5 13.4 152 67-229 35-186 (263)
108 3cvr_A Invasion plasmid antige 99.6 1.3E-14 4.5E-19 149.0 17.2 182 95-348 59-241 (571)
109 2v9t_B SLIT homolog 2 protein 99.6 9.2E-15 3.2E-19 132.3 14.0 147 76-227 14-164 (220)
110 2o6s_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 133.6 11.2 160 70-247 25-190 (208)
111 2v70_A SLIT-2, SLIT homolog 2 99.6 1.6E-14 5.6E-19 130.7 13.8 148 76-228 14-166 (220)
112 2xot_A Amphoterin-induced prot 99.6 1.4E-14 4.7E-19 141.7 12.6 171 76-258 21-201 (361)
113 2v9t_B SLIT homolog 2 protein 99.6 3.5E-14 1.2E-18 128.5 13.4 141 106-257 19-163 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 3.6E-14 1.2E-18 128.4 13.1 147 98-258 14-165 (220)
115 2ell_A Acidic leucine-rich nuc 99.5 3E-14 1E-18 123.2 11.3 140 120-264 22-165 (168)
116 3e6j_A Variable lymphocyte rec 99.5 6.4E-14 2.2E-18 127.6 14.1 148 97-259 21-172 (229)
117 2xot_A Amphoterin-induced prot 99.5 3.6E-14 1.2E-18 138.8 12.0 163 62-229 29-203 (361)
118 1dce_A Protein (RAB geranylger 99.5 1.4E-16 4.9E-21 164.3 -7.7 190 72-274 348-566 (567)
119 2ell_A Acidic leucine-rich nuc 99.5 2.1E-13 7.1E-18 117.8 10.3 107 119-227 46-159 (168)
120 2je0_A Acidic leucine-rich nuc 99.4 1.4E-13 4.6E-18 116.4 7.2 128 121-254 16-148 (149)
121 4b8c_D Glucose-repressible alc 99.4 3.5E-14 1.2E-18 151.1 4.1 157 72-231 172-332 (727)
122 1w8a_A SLIT protein; signaling 99.4 8.1E-13 2.8E-17 116.8 11.5 125 125-259 11-139 (192)
123 2je0_A Acidic leucine-rich nuc 99.4 3.5E-13 1.2E-17 113.8 8.7 122 72-198 16-148 (149)
124 1a9n_A U2A', U2A'; complex (nu 99.4 3.7E-13 1.3E-17 117.2 8.3 124 71-199 17-149 (176)
125 1a9n_A U2A', U2A'; complex (nu 99.4 4.4E-13 1.5E-17 116.7 8.1 133 119-257 16-151 (176)
126 2wfh_A SLIT homolog 2 protein 99.4 3.1E-12 1.1E-16 113.0 12.2 104 123-227 32-138 (193)
127 2wfh_A SLIT homolog 2 protein 99.4 4.3E-12 1.5E-16 112.1 12.3 124 125-258 13-138 (193)
128 1w8a_A SLIT protein; signaling 99.4 2.8E-12 9.6E-17 113.3 10.7 121 76-200 11-136 (192)
129 2o6r_A Variable lymphocyte rec 99.3 1.5E-11 5E-16 107.1 12.4 121 76-200 10-134 (177)
130 4b8c_D Glucose-repressible alc 99.3 4.1E-13 1.4E-17 142.8 2.1 112 93-208 222-334 (727)
131 2o6r_A Variable lymphocyte rec 99.3 2.6E-11 9E-16 105.5 13.0 105 122-227 28-136 (177)
132 1dce_A Protein (RAB geranylger 99.3 9.4E-12 3.2E-16 128.3 9.9 124 122-253 441-567 (567)
133 1ds9_A Outer arm dynein; leuci 99.2 2.4E-13 8.2E-18 120.9 -2.7 139 110-252 37-180 (198)
134 3sb4_A Hypothetical leucine ri 99.2 5.2E-11 1.8E-15 114.7 9.9 189 72-274 48-327 (329)
135 1ds9_A Outer arm dynein; leuci 99.2 8.7E-13 3E-17 117.2 -3.8 143 74-221 24-180 (198)
136 2r9u_A Variable lymphocyte rec 99.1 1.6E-10 5.5E-15 100.0 10.4 100 125-227 15-117 (174)
137 3g39_A Variable lymphocyte rec 99.1 1.8E-10 6E-15 99.4 10.3 102 124-228 11-115 (170)
138 2r9u_A Variable lymphocyte rec 99.1 2.6E-10 8.8E-15 98.7 10.4 103 76-182 15-120 (174)
139 3g39_A Variable lymphocyte rec 99.1 7.3E-10 2.5E-14 95.5 11.3 102 75-180 11-115 (170)
140 4fdw_A Leucine rich hypothetic 99.0 8.7E-09 3E-13 101.5 17.0 233 73-348 113-356 (401)
141 3un9_A NLR family member X1; l 98.9 1.8E-10 6.2E-15 112.4 1.7 133 122-259 101-252 (372)
142 3sb4_A Hypothetical leucine ri 98.8 9.9E-09 3.4E-13 98.6 10.3 168 72-253 100-328 (329)
143 4fdw_A Leucine rich hypothetic 98.8 1.7E-07 5.9E-12 92.2 17.6 187 71-275 178-377 (401)
144 2ifg_A High affinity nerve gro 98.8 1.5E-08 5E-13 98.2 9.7 89 109-199 20-112 (347)
145 3un9_A NLR family member X1; l 98.7 1.9E-09 6.3E-14 105.2 1.1 157 70-230 69-254 (372)
146 2ifg_A High affinity nerve gro 98.7 5E-08 1.7E-12 94.4 10.2 105 76-182 11-118 (347)
147 4fs7_A Uncharacterized protein 98.6 9.7E-07 3.3E-11 86.9 16.4 122 93-224 69-194 (394)
148 2ra8_A Uncharacterized protein 98.6 9.5E-08 3.2E-12 92.4 8.6 180 72-259 106-320 (362)
149 4fs7_A Uncharacterized protein 98.6 1.5E-06 5.1E-11 85.6 16.9 144 71-223 69-216 (394)
150 3e4g_A ATP synthase subunit S, 98.5 4.1E-08 1.4E-12 83.5 2.6 94 386-493 61-154 (176)
151 3e4g_A ATP synthase subunit S, 98.3 3.5E-07 1.2E-11 77.8 5.0 40 310-353 62-101 (176)
152 2ra8_A Uncharacterized protein 98.3 8.9E-07 3.1E-11 85.5 7.3 98 308-432 218-320 (362)
153 1io0_A Tropomodulin; LRR prote 98.1 1.5E-06 5.1E-11 75.6 3.8 108 118-227 32-163 (185)
154 1io0_A Tropomodulin; LRR prote 98.0 2.5E-06 8.5E-11 74.2 3.5 117 138-259 29-164 (185)
155 4gt6_A Cell surface protein; l 97.8 0.0008 2.7E-08 65.9 17.4 81 308-428 287-367 (394)
156 3rw6_A Nuclear RNA export fact 97.8 1.6E-05 5.4E-10 72.9 4.3 78 143-221 168-257 (267)
157 4gt6_A Cell surface protein; l 97.7 0.0011 3.8E-08 64.8 16.4 121 74-198 65-190 (394)
158 3rw6_A Nuclear RNA export fact 97.6 6.9E-05 2.4E-09 68.6 5.3 60 165-227 168-232 (267)
159 4h09_A Hypothetical leucine ri 97.4 0.019 6.5E-07 55.6 21.0 57 384-458 284-340 (379)
160 2a5y_B CED-4; apoptosis; HET: 97.3 5.9E-05 2E-09 77.4 2.0 47 4-51 427-473 (549)
161 4h09_A Hypothetical leucine ri 95.9 0.058 2E-06 52.1 11.8 127 116-254 211-341 (379)
162 1pgv_A TMD-1, tropomodulin TMD 95.7 0.012 4E-07 50.8 5.0 82 118-199 37-135 (197)
163 1pgv_A TMD-1, tropomodulin TMD 95.5 0.01 3.5E-07 51.2 4.2 36 164-199 67-107 (197)
164 3rfe_A Platelet glycoprotein I 94.2 0.063 2.1E-06 43.0 5.2 51 126-178 12-66 (130)
165 3sfz_A APAF-1, apoptotic pepti 93.9 0.034 1.1E-06 62.9 4.3 45 5-49 408-452 (1249)
166 3rfe_A Platelet glycoprotein I 93.6 0.13 4.4E-06 41.1 6.0 34 123-156 32-66 (130)
167 1z6t_A APAF-1, apoptotic prote 89.4 0.21 7.3E-06 51.3 3.8 42 6-47 409-450 (591)
168 1vt4_I APAF-1 related killer D 83.9 0.56 1.9E-05 50.8 3.3 36 6-43 402-437 (1221)
169 2lz0_A Uncharacterized protein 30.7 59 0.002 23.9 4.2 43 110-153 8-51 (100)
170 2lz0_A Uncharacterized protein 28.1 69 0.0024 23.6 4.2 45 85-133 8-54 (100)
No 1
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=4.9e-29 Score=253.53 Aligned_cols=343 Identities=18% Similarity=0.256 Sum_probs=254.9
Q ss_pred cccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCe
Q 037920 70 SAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRT 149 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~ 149 (505)
..+++++++++.++.+..++....+++|++|++ .++.+..++. +..+++|++|++++|.+..++. +..+++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~L---s~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF---SNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEEC---CCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 456789999999999988888778999999999 5566667766 6889999999999999998877 899999999
Q ss_pred eEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920 150 LSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK 229 (505)
Q Consensus 150 L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 229 (505)
|++++|.+...+.++.+++|++|++++|.++.++ .+..+++|++|++.+ ....++. ++.+++|++|++++|.+..
T Consensus 117 L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 117 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSD 191 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCC
Confidence 9999999888545899999999999999888876 588899999999864 3334443 7889999999999888754
Q ss_pred chhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhc
Q 037920 230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQ 309 (505)
Q Consensus 230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 309 (505)
. ..+..+++|+.|++++|.+..++....+++|+.|++..+. +.....+ ..++
T Consensus 192 ~---------~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~------------------l~~~~~l-~~l~ 243 (466)
T 1o6v_A 192 I---------SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ------------------LKDIGTL-ASLT 243 (466)
T ss_dssp C---------GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC------------------CCCCGGG-GGCT
T ss_pred C---------hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCC------------------cccchhh-hcCC
Confidence 3 2377889999999999988776553348888888875321 1111122 2367
Q ss_pred ceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcccccccc-chhcchhhhhhhhcccccccccccccccc
Q 037920 310 GIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREE-STDVMQSHEIILKVNVNALFVEKVTLPKL 388 (505)
Q Consensus 310 ~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~L 388 (505)
+|+.|++++| .+...+. + ..+++|++|++++|.......+..+. ++.+++..+.+.+.. ....+++|
T Consensus 244 ~L~~L~l~~n---~l~~~~~-~--~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L 311 (466)
T 1o6v_A 244 NLTDLDLANN---QISNLAP-L--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS------PISNLKNL 311 (466)
T ss_dssp TCSEEECCSS---CCCCCGG-G--TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG------GGGGCTTC
T ss_pred CCCEEECCCC---ccccchh-h--hcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCch------hhcCCCCC
Confidence 8888888887 3333333 3 66788888888888743333333333 445555555554422 13468899
Q ss_pred ccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccc
Q 037920 389 ENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFC 468 (505)
Q Consensus 389 ~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~ 468 (505)
+.|++++|++..+.+ +..+++|++|++++|. ++.+ + ....+++|+.|++++|+ +..+.
T Consensus 312 ~~L~L~~n~l~~~~~----------~~~l~~L~~L~l~~n~-l~~~--~--------~l~~l~~L~~L~l~~n~-l~~~~ 369 (466)
T 1o6v_A 312 TYLTLYFNNISDISP----------VSSLTKLQRLFFYNNK-VSDV--S--------SLANLTNINWLSAGHNQ-ISDLT 369 (466)
T ss_dssp SEEECCSSCCSCCGG----------GGGCTTCCEEECCSSC-CCCC--G--------GGTTCTTCCEEECCSSC-CCBCG
T ss_pred CEEECcCCcCCCchh----------hccCccCCEeECCCCc-cCCc--h--------hhccCCCCCEEeCCCCc-cCccc
Confidence 999999998877644 6788999999999985 6654 1 13466999999999886 44443
Q ss_pred cCCcccccCCCccceecccCc
Q 037920 469 TGDVDILEFPSLKELIINRCP 489 (505)
Q Consensus 469 ~~~~~~~~~~~L~~L~i~~C~ 489 (505)
. +..+++|+.|++++|+
T Consensus 370 ~----~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 370 P----LANLTRITQLGLNDQA 386 (466)
T ss_dssp G----GTTCTTCCEEECCCEE
T ss_pred h----hhcCCCCCEEeccCCc
Confidence 3 6788999999999983
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=5.6e-29 Score=262.27 Aligned_cols=336 Identities=19% Similarity=0.263 Sum_probs=231.3
Q ss_pred ccChhHHhCCCCccEEEEeCCcCcc------------------Cccccc--CCCCCCeeEeeccCCCC--cccccCCCCC
Q 037920 112 TIPNKFFERMMQVRVINLTNINLMS------------------LPSSLG--LLSNLRTLSLDNCKLLD--ITVVRDLKKL 169 (505)
Q Consensus 112 ~~~~~~~~~l~~L~~L~l~~~~~~~------------------l~~~l~--~l~~L~~L~L~~~~l~~--~~~i~~l~~L 169 (505)
.+|.. +.++++|++|++++|.++. +|..++ ++++|++|++++|.+.+ |..++++++|
T Consensus 197 ~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 36666 5889999999999999998 999999 99999999999999777 7899999999
Q ss_pred cEEEccCCC-Ccc--cchhhhCC------CCCCEEeeeCCCCCCccCh--hhhcCCCCccEEEeeCCCCCCchhhhhccc
Q 037920 170 EILCLRGSN-IKM--LPIEVSEL------ARLRLLGLRDCRELEVIPA--NVLSNLSHLEELYIGYNSFGKWEVEMEGVK 238 (505)
Q Consensus 170 ~~L~l~~~~-l~~--lp~~i~~l------~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 238 (505)
++|++++|+ ++. +|..++++ ++|++|++++| .+..+|. . ++.+++|++|++++|.+ .|.+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l-------~g~i 346 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQL-------EGKL 346 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCC-------EEEC
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcC-------ccch
Confidence 999999998 884 88888887 99999999995 5558887 5 89999999999999988 5667
Q ss_pred cccccCCCCcCEEEeecccCCCCCCCCC-CCC-CcEEEEEEcceeec-c----c---ccceEEecCCCCcc-chhhHHH-
Q 037920 239 NASLHELKHLTSLELHIKDVNTLPRGLF-FPK-LQRYKIHIGGYYYA-G----V---WRRELKICPDSKIR-LKDGLIV- 306 (505)
Q Consensus 239 ~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~-L~~L~~~~~~~~~~-~----~---~~~~l~l~~~~~~~-~~~~~~~- 306 (505)
| .+..+++|+.|++++|.+..+|..+. +++ |+.|++..+....- . . .-..+.+..+.-.. .+..+..
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred h-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 7 78888888888888888888877765 677 88888765432200 0 0 00113332211110 0111110
Q ss_pred -----HhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCC--Cccccccc--------cchhcchhhhhhh
Q 037920 307 -----QLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPN--PAESKRRE--------ESTDVMQSHEIIL 371 (505)
Q Consensus 307 -----~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~--~~~~l~~L--------~l~~l~~~~~~~~ 371 (505)
.+++|+.|++++| .+..+|..+. ..+++|++|++++|... +...+..+ .++.++++.+.+.
T Consensus 426 ~~~~~~~~~L~~L~Ls~N---~l~~lp~~~~-~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNN---QISKFPKELF-STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CSSCCCCCCEEEEECCSS---CCCSCCTHHH-HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred ccccccCCCCCEEECcCC---ccCcCCHHHH-ccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 1457888888877 3445665542 45778888888887732 22222222 3445555555555
Q ss_pred hccccccccccc--cccccccccccccccccccccceeeccCccccccccccEEEEcccc------ccccceeccccccc
Q 037920 372 KVNVNALFVEKV--TLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR------VLEELIVVENQEER 443 (505)
Q Consensus 372 ~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~------~l~~i~~~~~~~~~ 443 (505)
.. ..... .+++|+.|++++|++..++.. +..+++|++|++++|. ....+ +.
T Consensus 502 ~l-----p~~~~~~~l~~L~~L~Ls~N~l~~ip~~---------~~~l~~L~~L~Ls~N~~ls~N~l~~~~--p~----- 560 (636)
T 4eco_A 502 KL-----SDDFRATTLPYLVGIDLSYNSFSKFPTQ---------PLNSSTLKGFGIRNQRDAQGNRTLREW--PE----- 560 (636)
T ss_dssp BC-----CGGGSTTTCTTCCEEECCSSCCSSCCCG---------GGGCSSCCEEECCSCBCTTCCBCCCCC--CT-----
T ss_pred cc-----ChhhhhccCCCcCEEECCCCCCCCcChh---------hhcCCCCCEEECCCCcccccCcccccC--hH-----
Confidence 21 11112 577888888888877765443 6678888888886543 12222 22
Q ss_pred ccccccccccccccccCcccccccccCCcccccCCCccceecccCccc
Q 037920 444 KNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEF 491 (505)
Q Consensus 444 ~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L 491 (505)
....+++|++|+++++.- ..++. .+ +++|+.|++++||-.
T Consensus 561 --~l~~l~~L~~L~Ls~N~l-~~ip~---~~--~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 561 --GITLCPSLTQLQIGSNDI-RKVNE---KI--TPNISVLDIKDNPNI 600 (636)
T ss_dssp --TGGGCSSCCEEECCSSCC-CBCCS---CC--CTTCCEEECCSCTTC
T ss_pred --HHhcCCCCCEEECCCCcC-CccCH---hH--hCcCCEEECcCCCCc
Confidence 234568888888888873 55543 22 388999999998544
No 3
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.7e-28 Score=253.75 Aligned_cols=161 Identities=21% Similarity=0.218 Sum_probs=125.5
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP- 138 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~- 138 (505)
++..++. ..++.+++|++++|.+..++. ...+++|++|++ .++.+..++...|.++++|++|++++|.++.++
T Consensus 18 ~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---s~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL---SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp CCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEEC---TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEEC---CCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence 4555554 456789999999999977764 348999999999 555677777777789999999999999998865
Q ss_pred ccccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcc--cchhhhCCCCCCEEeeeCCCCCCccChhhhcCC
Q 037920 139 SSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKM--LPIEVSELARLRLLGLRDCRELEVIPANVLSNL 214 (505)
Q Consensus 139 ~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l 214 (505)
..+..+++|++|++++|.+.. + ..++.+++|++|++++|.++. +|..++++++|++|++++| .+..++...++.+
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 172 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccch
Confidence 678999999999999999888 3 468999999999999998885 6888999999999999984 4455543334444
Q ss_pred CCc----cEEEeeCCCC
Q 037920 215 SHL----EELYIGYNSF 227 (505)
Q Consensus 215 ~~L----~~L~l~~~~~ 227 (505)
++| +.+++++|.+
T Consensus 173 ~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp HTCTTCCCEEECTTCCC
T ss_pred hccchhhhhcccCCCCc
Confidence 444 5555555544
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=7.9e-28 Score=235.15 Aligned_cols=307 Identities=17% Similarity=0.223 Sum_probs=228.6
Q ss_pred CcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCC
Q 037920 67 SDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSN 146 (505)
Q Consensus 67 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~ 146 (505)
.....++++++++++++.+..++....+++|++|++ .++.+..++. +..+++|++|++++|.++.++ .+..+++
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l---~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNL---NGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTN 111 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred ccchhcccccEEEEeCCccccchhhhhcCCccEEEc---cCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCc
Confidence 344578889999999999888887778889999999 5556666666 678899999999998888875 5888888
Q ss_pred CCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCC
Q 037920 147 LRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS 226 (505)
Q Consensus 147 L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 226 (505)
|++|++++|.+...+.+..+++|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|++++|.
T Consensus 112 L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 112 LRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp CSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSC
T ss_pred CCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCc
Confidence 999999888888844488888899999888844433345888888888888884 4455554 6788888888888887
Q ss_pred CCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHH
Q 037920 227 FGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIV 306 (505)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 306 (505)
+.... . +..+++|+.|++++|.+..++.. .
T Consensus 189 l~~~~--------~-~~~l~~L~~L~l~~n~l~~~~~~-----------------------------------------~ 218 (347)
T 4fmz_A 189 IEDIS--------P-LASLTSLHYFTAYVNQITDITPV-----------------------------------------A 218 (347)
T ss_dssp CCCCG--------G-GGGCTTCCEEECCSSCCCCCGGG-----------------------------------------G
T ss_pred ccccc--------c-ccCCCccceeecccCCCCCCchh-----------------------------------------h
Confidence 75432 1 67788888888888776543321 1
Q ss_pred HhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccc
Q 037920 307 QLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLP 386 (505)
Q Consensus 307 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (505)
.+++|+.|++++| .+..++. + ..+++|++|++++|.... +.....++
T Consensus 219 ~~~~L~~L~l~~n---~l~~~~~-~--~~l~~L~~L~l~~n~l~~---------------------------~~~~~~l~ 265 (347)
T 4fmz_A 219 NMTRLNSLKIGNN---KITDLSP-L--ANLSQLTWLEIGTNQISD---------------------------INAVKDLT 265 (347)
T ss_dssp GCTTCCEEECCSS---CCCCCGG-G--TTCTTCCEEECCSSCCCC---------------------------CGGGTTCT
T ss_pred cCCcCCEEEccCC---ccCCCcc-h--hcCCCCCEEECCCCccCC---------------------------ChhHhcCC
Confidence 2678888888887 3444444 4 678999999999886211 11223688
Q ss_pred ccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccc
Q 037920 387 KLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRN 466 (505)
Q Consensus 387 ~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 466 (505)
+|+.|++++|++..++. +..+++|++|++++|. ++... +. ....+++|+.|++++|+ +..
T Consensus 266 ~L~~L~l~~n~l~~~~~----------~~~l~~L~~L~L~~n~-l~~~~-~~-------~l~~l~~L~~L~L~~n~-l~~ 325 (347)
T 4fmz_A 266 KLKMLNVGSNQISDISV----------LNNLSQLNSLFLNNNQ-LGNED-ME-------VIGGLTNLTTLFLSQNH-ITD 325 (347)
T ss_dssp TCCEEECCSSCCCCCGG----------GGGCTTCSEEECCSSC-CCGGG-HH-------HHHTCTTCSEEECCSSS-CCC
T ss_pred CcCEEEccCCccCCChh----------hcCCCCCCEEECcCCc-CCCcC-hh-------HhhccccCCEEEccCCc-ccc
Confidence 99999999998877643 7788999999999996 54432 11 13456999999999997 555
Q ss_pred cccCCcccccCCCccceecccCc
Q 037920 467 FCTGDVDILEFPSLKELIINRCP 489 (505)
Q Consensus 467 ~~~~~~~~~~~~~L~~L~i~~C~ 489 (505)
+.. +..+++|+.|++++|+
T Consensus 326 ~~~----~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 326 IRP----LASLSKMDSADFANQV 344 (347)
T ss_dssp CGG----GGGCTTCSEESSSCC-
T ss_pred ccC----hhhhhccceeehhhhc
Confidence 443 6779999999999985
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.1e-27 Score=251.91 Aligned_cols=404 Identities=15% Similarity=0.167 Sum_probs=249.8
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-c
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-P 138 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~ 138 (505)
++..++. ..++.+++|++++|.+..++. ...+++|++|++ .++.+..+++..|.++++|++|++++|.++.+ |
T Consensus 23 ~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L---s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 23 GLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL---TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp CCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEEC---TTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred CcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEEC---CCCccceeChhhccCccccCeeeCCCCcccccCh
Confidence 3444443 356789999999999977753 348999999999 55555566555578999999999999998874 6
Q ss_pred ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCC
Q 037920 139 SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLS 215 (505)
Q Consensus 139 ~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 215 (505)
..++.+++|++|++++|.+.. +..++.+++|++|++++|.++.++ +.+..+++|++|++++ +.+..++...++.++
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQ 177 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTT
T ss_pred hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhc
Confidence 788999999999999999888 578889999999999999888762 3455589999999988 455666555578888
Q ss_pred Ccc--EEEeeCCCCCCchhhh-----------------------------------------------------------
Q 037920 216 HLE--ELYIGYNSFGKWEVEM----------------------------------------------------------- 234 (505)
Q Consensus 216 ~L~--~L~l~~~~~~~~~~~~----------------------------------------------------------- 234 (505)
+|+ .|++++|.+.......
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred ccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 888 7888877665432100
Q ss_pred ---------hccccccccCCCCcCEEEeecccCCCCCCCCC-CCCCcEEEEEEcceeeccc-------ccceEEecCCCC
Q 037920 235 ---------EGVKNASLHELKHLTSLELHIKDVNTLPRGLF-FPKLQRYKIHIGGYYYAGV-------WRRELKICPDSK 297 (505)
Q Consensus 235 ---------~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~~~~~~~~~~~~-------~~~~l~l~~~~~ 297 (505)
.+..+..+..+++|+.|++++|.+..+|..+. +++|+.|++..+....... .-..+.+..+..
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 01112336677888888888888888877765 7788887775432111000 000133332111
Q ss_pred c-cchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCC--CCcccccccc-chhcchhhhhhhhc
Q 037920 298 I-RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPP--NPAESKRREE-STDVMQSHEIILKV 373 (505)
Q Consensus 298 ~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~--~~~~~l~~L~-l~~l~~~~~~~~~~ 373 (505)
. ..+......+++|+.|++++|........+..+ ..+++|++|++++|.. .....+..+. ++.+++..+.+.+.
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 1 111111222556666666665111111113333 5566666666666651 1111222222 33444444444332
Q ss_pred cccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceeccccccccccccccccc
Q 037920 374 NVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQL 453 (505)
Q Consensus 374 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L 453 (505)
..... ...+++|+.|++++|.+....+.. +..+++|++|++++|. ++....+.. .....+++|
T Consensus 416 ~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~-l~~~~~~~~-----~~~~~l~~L 478 (606)
T 3t6q_A 416 DAQSP---FQNLHLLKVLNLSHSLLDISSEQL--------FDGLPALQHLNLQGNH-FPKGNIQKT-----NSLQTLGRL 478 (606)
T ss_dssp TTCCT---TTTCTTCCEEECTTCCCBTTCTTT--------TTTCTTCCEEECTTCB-CGGGEECSS-----CGGGGCTTC
T ss_pred ccchh---hhCcccCCEEECCCCccCCcCHHH--------HhCCCCCCEEECCCCC-CCccccccc-----hhhccCCCc
Confidence 11111 124667777777777655442211 5667888888888886 433211110 123456888
Q ss_pred ccccccCcccccccccCCcccccCCCccceecccCcccee
Q 037920 454 QYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLM 493 (505)
Q Consensus 454 ~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 493 (505)
+.|++++|. +..+. |..+..+++|+.|++++| ++..
T Consensus 479 ~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~ 514 (606)
T 3t6q_A 479 EILVLSFCD-LSSID--QHAFTSLKMMNHVDLSHN-RLTS 514 (606)
T ss_dssp CEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSS-CCCG
T ss_pred cEEECCCCc-cCccC--hhhhccccCCCEEECCCC-ccCc
Confidence 999988885 44432 234677899999999988 3443
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.5e-27 Score=250.90 Aligned_cols=140 Identities=21% Similarity=0.190 Sum_probs=117.1
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-c
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-P 138 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~ 138 (505)
+++.++. ...+++++|++++|.+..++. ..++++|++|++ .++.+..+++..|.++++|++|++++|.++.+ |
T Consensus 22 ~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---s~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p 97 (606)
T 3vq2_A 22 KLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDL---SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97 (606)
T ss_dssp CCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC---TTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred CcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeC---CCCcccccCHHHhhchhhcCEeECCCCcccccCh
Confidence 4555554 356889999999999987765 349999999999 55666677666678999999999999999986 7
Q ss_pred ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCc--ccchhhhCCCCCCEEeeeCCCCCCcc
Q 037920 139 SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIK--MLPIEVSELARLRLLGLRDCRELEVI 206 (505)
Q Consensus 139 ~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~ 206 (505)
..++++++|++|++++|.+.. +..++++++|++|++++|.++ .+|..++++++|++|++++| .+..+
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~ 168 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTI 168 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEE
T ss_pred hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceec
Confidence 789999999999999999888 378999999999999999987 46889999999999999985 33433
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.4e-28 Score=257.49 Aligned_cols=362 Identities=11% Similarity=0.157 Sum_probs=263.1
Q ss_pred CCCCC-CCCCccEEEeeecCCCCccc-----------------cChhHHh--CCCCccEEEEeCCcCcc-CcccccCCCC
Q 037920 88 LPEVV-ESPQLKLLFICADQESSSLT-----------------IPNKFFE--RMMQVRVINLTNINLMS-LPSSLGLLSN 146 (505)
Q Consensus 88 l~~~~-~~~~L~~L~l~~~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~-l~~~l~~l~~ 146 (505)
+|... ++++|++|++ .++...+. +|..+ . ++++|++|++++|.+.. +|..++++++
T Consensus 198 ip~~l~~l~~L~~L~L--s~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYM--GNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp ECGGGGGCTTCCEEEE--ESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred CCHHHhcccCCCEEEC--cCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 55433 8999999999 44443332 78775 5 89999999999999775 8999999999
Q ss_pred CCeeEeeccC-CCC---cccccCC------CCCcEEEccCCCCcccch--hhhCCCCCCEEeeeCCCCCCccChhhhcCC
Q 037920 147 LRTLSLDNCK-LLD---ITVVRDL------KKLEILCLRGSNIKMLPI--EVSELARLRLLGLRDCRELEVIPANVLSNL 214 (505)
Q Consensus 147 L~~L~L~~~~-l~~---~~~i~~l------~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l 214 (505)
|++|++++|. +++ |..++.+ ++|++|++++|+++.+|. .++++++|++|++++|...+.+| . ++.+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l 352 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSE 352 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCC
Confidence 9999999998 874 6777776 999999999999999998 89999999999999965444888 4 8999
Q ss_pred CCccEEEeeCCCCCCchhhhhccccccccCCCC-cCEEEeecccCCCCCCCCC---CCCCcEEEEEEcceeec-------
Q 037920 215 SHLEELYIGYNSFGKWEVEMEGVKNASLHELKH-LTSLELHIKDVNTLPRGLF---FPKLQRYKIHIGGYYYA------- 283 (505)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~~~~---~~~L~~L~~~~~~~~~~------- 283 (505)
++|++|++++|.+ . .+|..+..+++ |+.|++++|.+..+|..+. +++|+.|+++.+.....
T Consensus 353 ~~L~~L~L~~N~l-------~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 353 IKLASLNLAYNQI-------T-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp EEESEEECCSSEE-------E-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred CCCCEEECCCCcc-------c-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 9999999999986 3 56778999999 9999999999999998765 34788888765532110
Q ss_pred -------ccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhcc------CCCCccEEEEeCCCCC
Q 037920 284 -------GVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKV------GPSQLKHLHIWNHPPN 350 (505)
Q Consensus 284 -------~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~------~l~~L~~L~l~~~~~~ 350 (505)
...-..+.+..+.-...+..+...+++|+.|++++| .+..+|...... .+++|+.|++++|.-.
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N---~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN---MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS---CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC---CCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 001112555554444566666666899999999998 444777655321 1239999999999843
Q ss_pred Ccc-ccc--ccc-chhcchhhhhhhhccccccccccccccccccccccc------cccc-cccccceeeccCcccccccc
Q 037920 351 PAE-SKR--REE-STDVMQSHEIILKVNVNALFVEKVTLPKLENLELDS------INVE-RIWQSHVAVMSCVSNNTFVR 419 (505)
Q Consensus 351 ~~~-~l~--~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~l~-~~~~~~~~v~~c~~l~~l~~ 419 (505)
..+ .+. .+. ++.++++.+.+.+. ......+++|+.|++++ |++. .++.. +..+++
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~i-----p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~---------l~~l~~ 567 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYNSFSKF-----PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG---------ITLCPS 567 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT---------GGGCSS
T ss_pred ccChhhhhccCCCcCEEECCCCCCCCc-----ChhhhcCCCCCEEECCCCcccccCcccccChHH---------HhcCCC
Confidence 222 121 332 55677777777662 12234689999999965 4333 33222 788999
Q ss_pred ccEEEEccccccccceecccccccccccccccccccccccCcccccccccC------CcccccCCCccceecccCccce
Q 037920 420 LQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTG------DVDILEFPSLKELIINRCPEFL 492 (505)
Q Consensus 420 L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~------~~~~~~~~~L~~L~i~~C~~L~ 492 (505)
|++|++++|. ++.+ +... +++|+.|++++++-. .+... ......+...+..+|++||.|.
T Consensus 568 L~~L~Ls~N~-l~~i--p~~~---------~~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 568 LTQLQIGSND-IRKV--NEKI---------TPNISVLDIKDNPNI-SIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CCEEECCSSC-CCBC--CSCC---------CTTCCEEECCSCTTC-EEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CCEEECCCCc-CCcc--CHhH---------hCcCCEEECcCCCCc-cccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 9999999998 5766 3322 389999999999733 22210 0112234455778999999885
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=3.3e-28 Score=262.21 Aligned_cols=85 Identities=7% Similarity=0.002 Sum_probs=57.5
Q ss_pred cccccccccccccccccc-cccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920 384 TLPKLENLELDSINVERI-WQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE 462 (505)
Q Consensus 384 ~~~~L~~L~l~~~~l~~~-~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 462 (505)
.+++|+.|++++|++... +.. ++.+++|+.|++++|.--..+ +... ..+++|+.|+++++.
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~---------l~~l~~L~~L~Ls~N~l~g~i--p~~l-------~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKE---------IGSMPYLFILNLGHNDISGSI--PDEV-------GDLRGLNILDLSSNK 691 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGG---------GGGCTTCCEEECCSSCCCSCC--CGGG-------GGCTTCCEEECCSSC
T ss_pred ccccccEEECcCCcccccCCHH---------HhccccCCEEeCcCCccCCCC--ChHH-------hCCCCCCEEECCCCc
Confidence 356778888888866633 221 677888888888888633344 3333 345888888888887
Q ss_pred cccccccCCcccccCCCccceecccCc
Q 037920 463 KLRNFCTGDVDILEFPSLKELIINRCP 489 (505)
Q Consensus 463 ~L~~~~~~~~~~~~~~~L~~L~i~~C~ 489 (505)
--..++ ..+..+++|+.|++++++
T Consensus 692 l~g~ip---~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 692 LDGRIP---QAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CEECCC---GGGGGCCCCSEEECCSSE
T ss_pred ccCcCC---hHHhCCCCCCEEECcCCc
Confidence 444443 357778888888888873
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2e-27 Score=246.95 Aligned_cols=395 Identities=16% Similarity=0.164 Sum_probs=251.4
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS 139 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 139 (505)
+++.++. ...+++++|++++|.+..++. ...+++|++|++ .++.+..+++..|.++++|++|++++|.++.+++
T Consensus 16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL---KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred ccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEEC---CCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 4555554 345789999999999977643 349999999999 5666667776667899999999999999999776
Q ss_pred c-ccCCCCCCeeEeeccCCCC---cccccCCCCCcEEEccCCC-Ccccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcC
Q 037920 140 S-LGLLSNLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSN-IKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSN 213 (505)
Q Consensus 140 ~-l~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 213 (505)
. ++.+++|++|++++|.+.. +..++.+++|++|++++|. +..+| ..+.++++|++|++++|...+..|.. ++.
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~ 170 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKS 170 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTT
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhc
Confidence 4 9999999999999999875 5789999999999999997 67776 57899999999999996554445655 899
Q ss_pred CCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCC---CCC--CCCCCcEEEEEEcceeec-----
Q 037920 214 LSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLP---RGL--FFPKLQRYKIHIGGYYYA----- 283 (505)
Q Consensus 214 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~---~~~--~~~~L~~L~~~~~~~~~~----- 283 (505)
+++|++|++++|.+...+. ..+..+++|+.|++++|.+..++ ... .+++|+.|++..+.....
T Consensus 171 l~~L~~L~l~~n~~~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLE-------IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp CSEEEEEEEECSBSTTHHH-------HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred cccCceEecccCcccccch-------hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 9999999999887644322 22356899999999999887642 221 156666666543321100
Q ss_pred ---------------------cc--------------------------------------------ccceEEecCCCCc
Q 037920 284 ---------------------GV--------------------------------------------WRRELKICPDSKI 298 (505)
Q Consensus 284 ---------------------~~--------------------------------------------~~~~l~l~~~~~~ 298 (505)
+. .-..+.+......
T Consensus 244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence 00 0000222222222
Q ss_pred cchhhHHHHhcceeEEeecCCCCCCcchhhhhh-hccCCCCccEEEEeCCCCCCcc----cccccc-chhcchhhhhhhh
Q 037920 299 RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNEL-AKVGPSQLKHLHIWNHPPNPAE----SKRREE-STDVMQSHEIILK 372 (505)
Q Consensus 299 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~~l~~L~~L~l~~~~~~~~~----~l~~L~-l~~l~~~~~~~~~ 372 (505)
..+.++...+++|+.|++++| .....+|... ....+++|++|++++|.-.... .+..+. ++.++++.+.+.+
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 401 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSEN--LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP 401 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSS--CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC
T ss_pred cCCHHHHhcCccccEEEccCC--ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc
Confidence 233444444677777777776 3333333221 1155677777777777632211 122222 3345555554442
Q ss_pred ccccccccccccccccccccccccccccccccc------eeeccCcc---ccccccccEEEEccccccccceeccccccc
Q 037920 373 VNVNALFVEKVTLPKLENLELDSINVERIWQSH------VAVMSCVS---NNTFVRLQRIEIKNCRVLEELIVVENQEER 443 (505)
Q Consensus 373 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~------~~v~~c~~---l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 443 (505)
. ......+++|++|++++|+++.++... +.++.|.- ...+++|++|++++|. ++.+ +.
T Consensus 402 l-----p~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~i--p~----- 468 (549)
T 2z81_A 402 M-----PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTL--PD----- 468 (549)
T ss_dssp C-----CSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSC--CC-----
T ss_pred C-----ChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcC--CC-----
Confidence 1 111234566666666666555443211 01111110 2356677777777764 5544 22
Q ss_pred ccccccccccccccccCcccccccccCCcccccCCCccceecccCc
Q 037920 444 KNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCP 489 (505)
Q Consensus 444 ~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~ 489 (505)
...+++|+.|+++++. ++.+.. ..+..+++|+.|+++++|
T Consensus 469 ---~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 469 ---ASLFPVLLVMKISRNQ-LKSVPD--GIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp ---GGGCTTCCEEECCSSC-CCCCCT--TGGGGCTTCCEEECCSSC
T ss_pred ---cccCccCCEEecCCCc-cCCcCH--HHHhcCcccCEEEecCCC
Confidence 1235777888887774 444322 235677888888887775
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.5e-27 Score=255.98 Aligned_cols=334 Identities=19% Similarity=0.224 Sum_probs=236.7
Q ss_pred cChhHHhCCCCccEEEEeCCcCcc------------------Cccccc--CCCCCCeeEeeccCCCC--cccccCCCCCc
Q 037920 113 IPNKFFERMMQVRVINLTNINLMS------------------LPSSLG--LLSNLRTLSLDNCKLLD--ITVVRDLKKLE 170 (505)
Q Consensus 113 ~~~~~~~~l~~L~~L~l~~~~~~~------------------l~~~l~--~l~~L~~L~L~~~~l~~--~~~i~~l~~L~ 170 (505)
+|.. +.++++|++|++++|.++. +|+.++ ++++|++|++++|.+.+ |..++++++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 6666 5889999999999999998 999988 99999999999999766 78899999999
Q ss_pred EEEccCCC-Ccc--cchhhhCCC-------CCCEEeeeCCCCCCccCh--hhhcCCCCccEEEeeCCCCCCchhhhhccc
Q 037920 171 ILCLRGSN-IKM--LPIEVSELA-------RLRLLGLRDCRELEVIPA--NVLSNLSHLEELYIGYNSFGKWEVEMEGVK 238 (505)
Q Consensus 171 ~L~l~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 238 (505)
+|++++|+ ++. +|..+++++ +|++|++++| .+..+|. . ++.+++|+.|++++|.+. .+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~-l~~L~~L~~L~Ls~N~l~--------~l 588 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASAS-LQKMVKLGLLDCVHNKVR--------HL 588 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHH-HTTCTTCCEEECTTSCCC--------BC
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhh-hhcCCCCCEEECCCCCcc--------cc
Confidence 99999997 875 787777665 9999999994 5558887 5 899999999999999873 45
Q ss_pred cccccCCCCcCEEEeecccCCCCCCCCC-CCC-CcEEEEEEcceeecc-----cc---cceEEecCCCC---cc-chhhH
Q 037920 239 NASLHELKHLTSLELHIKDVNTLPRGLF-FPK-LQRYKIHIGGYYYAG-----VW---RRELKICPDSK---IR-LKDGL 304 (505)
Q Consensus 239 ~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~-L~~L~~~~~~~~~~~-----~~---~~~l~l~~~~~---~~-~~~~~ 304 (505)
| .+..+++|+.|++++|.+..+|..+. +++ |+.|++..+....-. .. -..+.+..+.- .+ .+..+
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred h-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 5 78889999999999999888888776 777 999988765322100 00 11133333111 11 00011
Q ss_pred HH-HhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCC--Cccccccc--------cchhcchhhhhhhhc
Q 037920 305 IV-QLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPN--PAESKRRE--------ESTDVMQSHEIILKV 373 (505)
Q Consensus 305 ~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~--~~~~l~~L--------~l~~l~~~~~~~~~~ 373 (505)
.. ..++|+.|++++| .+..+|..+. ..+++|+.|++++|.-. +...+..+ .++.++++.+.+...
T Consensus 668 ~~~~~~~L~~L~Ls~N---~L~~lp~~~~-~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l 743 (876)
T 4ecn_A 668 DDYKGINASTVTLSYN---EIQKFPTELF-ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743 (876)
T ss_dssp TTCCCCCEEEEECCSS---CCCSCCHHHH-HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC
T ss_pred ccccCCCcCEEEccCC---cCCccCHHHH-ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc
Confidence 10 1347899999887 4446776653 46889999999988722 22222211 345666666655521
Q ss_pred cccccccccc--cccccccccccccccccccccceeeccCccccccccccEEEEccccc------cccceeccccccccc
Q 037920 374 NVNALFVEKV--TLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRV------LEELIVVENQEERKN 445 (505)
Q Consensus 374 ~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~------l~~i~~~~~~~~~~~ 445 (505)
..... .+++|+.|++++|++..++.. +..+++|+.|++++|+. ...+ +.
T Consensus 744 -----p~~l~~~~l~~L~~L~Ls~N~L~~lp~~---------l~~L~~L~~L~Ls~N~~ls~N~l~~~i--p~------- 800 (876)
T 4ecn_A 744 -----SDDFRATTLPYLSNMDVSYNCFSSFPTQ---------PLNSSQLKAFGIRHQRDAEGNRILRQW--PT------- 800 (876)
T ss_dssp -----CGGGSTTTCTTCCEEECCSSCCSSCCCG---------GGGCTTCCEEECCCCBCTTCCBCCCCC--CT-------
T ss_pred -----hHHhhhccCCCcCEEEeCCCCCCccchh---------hhcCCCCCEEECCCCCCcccccccccC--hH-------
Confidence 11222 578889999988887776443 67888999999987442 2222 22
Q ss_pred ccccccccccccccCcccccccccCCcccccCCCccceecccCccc
Q 037920 446 SIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEF 491 (505)
Q Consensus 446 ~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L 491 (505)
....+++|+.|++++|.- ..++. .+ +++|+.|++++||-.
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~---~l--~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDE---KL--TPQLYILDIADNPNI 840 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCS---CC--CSSSCEEECCSCTTC
T ss_pred HHhcCCCCCEEECCCCCC-CccCH---hh--cCCCCEEECCCCCCC
Confidence 234579999999999874 66554 22 379999999999643
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1e-26 Score=249.61 Aligned_cols=364 Identities=12% Similarity=0.113 Sum_probs=260.4
Q ss_pred cccccCCCcEEEecCCCCcc------------------CCCCC---CCCCccEEEeeecCCCCccccChhHHhCCCCccE
Q 037920 68 DESAIKLYTSIVLHDIRTNL------------------LPEVV---ESPQLKLLFICADQESSSLTIPNKFFERMMQVRV 126 (505)
Q Consensus 68 ~~~~~~~l~~l~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 126 (505)
....+++++.|++++|.+.. +|... .+++|+.|++ .++...+.+|.. |.++++|+.
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L--s~N~l~~~iP~~-l~~L~~L~~ 519 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL--YNCPNMTQLPDF-LYDLPELQS 519 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE--ESCTTCCSCCGG-GGGCSSCCE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC--cCCCCCccChHH-HhCCCCCCE
Confidence 35678899999999999977 77654 6999999999 566667788866 488999999
Q ss_pred EEEeCCc-Ccc--CcccccCCC-------CCCeeEeeccCCCC-cc--cccCCCCCcEEEccCCCCcccchhhhCCCCCC
Q 037920 127 INLTNIN-LMS--LPSSLGLLS-------NLRTLSLDNCKLLD-IT--VVRDLKKLEILCLRGSNIKMLPIEVSELARLR 193 (505)
Q Consensus 127 L~l~~~~-~~~--l~~~l~~l~-------~L~~L~L~~~~l~~-~~--~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~ 193 (505)
|++++|. ++. +|..++.++ +|++|++++|.+.. |. .++++++|++|++++|+++.+| .++++++|+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLT 598 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEES
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcce
Confidence 9999998 775 777666555 99999999999888 66 7999999999999999999888 889999999
Q ss_pred EEeeeCCCCCCccChhhhcCCCC-ccEEEeeCCCCCCchhhhhccccccccCCCC--cCEEEeecccCCCCCC----CCC
Q 037920 194 LLGLRDCRELEVIPANVLSNLSH-LEELYIGYNSFGKWEVEMEGVKNASLHELKH--LTSLELHIKDVNTLPR----GLF 266 (505)
Q Consensus 194 ~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~l~~----~~~ 266 (505)
.|++++| .+..+|.. +..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+...+. ...
T Consensus 599 ~L~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~--------~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 599 DLKLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLK--------YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp EEECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCC--------SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred EEECcCC-ccccchHH-HhhccccCCEEECcCCCCC--------cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 9999984 45588877 788888 999999999874 45566666654 9999999998854322 211
Q ss_pred ---CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhcc------CCC
Q 037920 267 ---FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKV------GPS 337 (505)
Q Consensus 267 ---~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~------~l~ 337 (505)
..+|+.|++.. +.-...+..+...+++|+.|++++| .+..+|..+... .++
T Consensus 669 ~~~~~~L~~L~Ls~-----------------N~L~~lp~~~~~~l~~L~~L~Ls~N---~L~~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 669 DYKGINASTVTLSY-----------------NEIQKFPTELFATGSPISTIILSNN---LMTSIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp TCCCCCEEEEECCS-----------------SCCCSCCHHHHHTTCCCSEEECCSC---CCSCCCTTSSSCTTSCCTTGG
T ss_pred cccCCCcCEEEccC-----------------CcCCccCHHHHccCCCCCEEECCCC---cCCccChHHhccccccccccC
Confidence 34666666542 2222345555556788999999987 444677655321 223
Q ss_pred CccEEEEeCCCCCCcc-ccc--ccc-chhcchhhhhhhhccccccccccccccccccccccc------ccccc-ccccce
Q 037920 338 QLKHLHIWNHPPNPAE-SKR--REE-STDVMQSHEIILKVNVNALFVEKVTLPKLENLELDS------INVER-IWQSHV 406 (505)
Q Consensus 338 ~L~~L~l~~~~~~~~~-~l~--~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~l~~-~~~~~~ 406 (505)
+|+.|++++|.-...+ .+. .++ ++.++++.|.+.+. ......+++|+.|++++ |++.. ++..
T Consensus 729 ~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l-----p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-- 801 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-----PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-- 801 (876)
T ss_dssp GCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT--
T ss_pred CccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc-----chhhhcCCCCCEEECCCCCCcccccccccChHH--
Confidence 8999999988732221 121 232 45666667766652 22334789999999987 43332 2221
Q ss_pred eeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccC------CcccccCCCc
Q 037920 407 AVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTG------DVDILEFPSL 480 (505)
Q Consensus 407 ~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~------~~~~~~~~~L 480 (505)
+..+++|++|++++|. ++.+ +... +++|+.|+|++|+-. ++... ......+..-
T Consensus 802 -------l~~L~~L~~L~Ls~N~-L~~I--p~~l---------~~~L~~LdLs~N~l~-~i~~~~~~~~~~~~~~~L~~n 861 (876)
T 4ecn_A 802 -------ITTCPSLIQLQIGSND-IRKV--DEKL---------TPQLYILDIADNPNI-SIDVTSVCPYIEAGMYVLLYD 861 (876)
T ss_dssp -------GGGCSSCCEEECCSSC-CCBC--CSCC---------CSSSCEEECCSCTTC-EEECGGGHHHHHTTCCEEECC
T ss_pred -------HhcCCCCCEEECCCCC-CCcc--CHhh---------cCCCCEEECCCCCCC-ccChHHccccccchheeecCC
Confidence 7889999999999998 5766 3322 379999999999843 22210 0112233444
Q ss_pred cceecccCccce
Q 037920 481 KELIINRCPEFL 492 (505)
Q Consensus 481 ~~L~i~~C~~L~ 492 (505)
+..+|++||.|.
T Consensus 862 ~~~~I~gC~~L~ 873 (876)
T 4ecn_A 862 KTQDIRGCDALG 873 (876)
T ss_dssp TTSEEESCGGGC
T ss_pred CccccCCCCCcc
Confidence 566889999875
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.3e-26 Score=224.74 Aligned_cols=288 Identities=14% Similarity=0.185 Sum_probs=226.5
Q ss_pred CCCCCcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccccc
Q 037920 63 YREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLG 142 (505)
Q Consensus 63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~ 142 (505)
+..++....++++++|++++|.+..++....+++|++|++ .++.+..++. +..+++|++|++++|.+..++. +.
T Consensus 56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L---~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~ 129 (347)
T 4fmz_A 56 VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYI---GTNKITDISA--LQNLTNLRELYLNEDNISDISP-LA 129 (347)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC---CSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GT
T ss_pred cccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEc---cCCcccCchH--HcCCCcCCEEECcCCcccCchh-hc
Confidence 4556667789999999999999988888779999999999 5566666754 6899999999999999999877 89
Q ss_pred CCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEE
Q 037920 143 LLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELY 221 (505)
Q Consensus 143 ~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 221 (505)
.+++|++|++++|.... +..+..+++|++|++++|.+..++. +..+++|++|++++| .+..++. +..+++|+.++
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~ 205 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFT 205 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEE
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceee
Confidence 99999999999997544 7779999999999999999988865 889999999999994 5666665 78999999999
Q ss_pred eeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccch
Q 037920 222 IGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLK 301 (505)
Q Consensus 222 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 301 (505)
+++|.+.... .+..+++|+.|++++|.+..++..
T Consensus 206 l~~n~l~~~~---------~~~~~~~L~~L~l~~n~l~~~~~~------------------------------------- 239 (347)
T 4fmz_A 206 AYVNQITDIT---------PVANMTRLNSLKIGNNKITDLSPL------------------------------------- 239 (347)
T ss_dssp CCSSCCCCCG---------GGGGCTTCCEEECCSSCCCCCGGG-------------------------------------
T ss_pred cccCCCCCCc---------hhhcCCcCCEEEccCCccCCCcch-------------------------------------
Confidence 9999875432 178899999999999988765531
Q ss_pred hhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccc
Q 037920 302 DGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVE 381 (505)
Q Consensus 302 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~ 381 (505)
..+++|+.|++++| .+..++ .+ ..+++|++|++++|.... ...
T Consensus 240 ----~~l~~L~~L~l~~n---~l~~~~-~~--~~l~~L~~L~l~~n~l~~---------------------------~~~ 282 (347)
T 4fmz_A 240 ----ANLSQLTWLEIGTN---QISDIN-AV--KDLTKLKMLNVGSNQISD---------------------------ISV 282 (347)
T ss_dssp ----TTCTTCCEEECCSS---CCCCCG-GG--TTCTTCCEEECCSSCCCC---------------------------CGG
T ss_pred ----hcCCCCCEEECCCC---ccCCCh-hH--hcCCCcCEEEccCCccCC---------------------------Chh
Confidence 12577888888877 333332 34 678889999998886111 012
Q ss_pred cccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCc
Q 037920 382 KVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDL 461 (505)
Q Consensus 382 ~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~ 461 (505)
...+++|+.|++++|.+....+.. +..+++|++|++++|+ ++.+.. ...+++|+.|+++++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~L~~n~-l~~~~~----------~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEV--------IGGLTNLTTLFLSQNH-ITDIRP----------LASLSKMDSADFANQ 343 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHH--------HHTCTTCSEEECCSSS-CCCCGG----------GGGCTTCSEESSSCC
T ss_pred hcCCCCCCEEECcCCcCCCcChhH--------hhccccCCEEEccCCc-cccccC----------hhhhhccceeehhhh
Confidence 235788999999988776653321 5678899999999987 665521 235688999998887
Q ss_pred c
Q 037920 462 E 462 (505)
Q Consensus 462 ~ 462 (505)
+
T Consensus 344 ~ 344 (347)
T 4fmz_A 344 V 344 (347)
T ss_dssp -
T ss_pred c
Confidence 6
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.8e-27 Score=256.54 Aligned_cols=326 Identities=19% Similarity=0.189 Sum_probs=194.1
Q ss_pred ccChhHHhCCCCccEEEEeCCcCc-cCcccccCCC-CCCeeEeeccCCCC--cccccC--CCCCcEEEccCCCCc-ccch
Q 037920 112 TIPNKFFERMMQVRVINLTNINLM-SLPSSLGLLS-NLRTLSLDNCKLLD--ITVVRD--LKKLEILCLRGSNIK-MLPI 184 (505)
Q Consensus 112 ~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~-~L~~L~L~~~~l~~--~~~i~~--l~~L~~L~l~~~~l~-~lp~ 184 (505)
.+|...+..+++|++|++++|.++ .+|..+..++ +|++|++++|.+.+ +..++. +++|++|++++|+++ .+|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 344333344444444444444443 2444444443 44444444444433 333333 455555666555554 4455
Q ss_pred hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC-CCCC
Q 037920 185 EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN-TLPR 263 (505)
Q Consensus 185 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~ 263 (505)
.+.++++|++|++++|...+.+|.. ++.+++|++|++++|.+ .+.+|..+..+++|+.|++++|.+. .+|.
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l-------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNML-------EGEIPQELMYVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCC-------CSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred HHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCCcc-------cCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence 6666666666666664433344544 56666666666666655 4455566666666666666666665 4454
Q ss_pred CCC-CCCCcEEEEEEcceeecccccceEEecCCCCc-cchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccE
Q 037920 264 GLF-FPKLQRYKIHIGGYYYAGVWRRELKICPDSKI-RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKH 341 (505)
Q Consensus 264 ~~~-~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~ 341 (505)
.+. +++|+.|++..+ .-. ..+.++.. +++|+.|++++| .....+|..+ ..+++|+.
T Consensus 485 ~l~~l~~L~~L~L~~N-----------------~l~~~~p~~~~~-l~~L~~L~L~~N--~l~~~~p~~l--~~l~~L~~ 542 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNN-----------------RLTGEIPKWIGR-LENLAILKLSNN--SFSGNIPAEL--GDCRSLIW 542 (768)
T ss_dssp GGGGCTTCCEEECCSS-----------------CCCSCCCGGGGG-CTTCCEEECCSS--CCEEECCGGG--GGCTTCCE
T ss_pred HHhcCCCCCEEEccCC-----------------ccCCcCChHHhc-CCCCCEEECCCC--cccCcCCHHH--cCCCCCCE
Confidence 443 566666655321 111 22333333 788999999988 5556778777 67889999
Q ss_pred EEEeCCCC---CCccc----------------------------------------------------------------
Q 037920 342 LHIWNHPP---NPAES---------------------------------------------------------------- 354 (505)
Q Consensus 342 L~l~~~~~---~~~~~---------------------------------------------------------------- 354 (505)
|++++|.- ++...
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 99988861 11000
Q ss_pred -----ccccc-chhcchhhhhhhhccccccccccccccccccccccccccc-cccccceeeccCccccccccccEEEEcc
Q 037920 355 -----KRREE-STDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVE-RIWQSHVAVMSCVSNNTFVRLQRIEIKN 427 (505)
Q Consensus 355 -----l~~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~v~~c~~l~~l~~L~~L~l~~ 427 (505)
+..+. ++.++++.|.+.|... ...+.+++|+.|++++|++. .++.. ++.+++|+.|++++
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~Ls~N~l~g~ip~~---------l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIP----KEIGSMPYLFILNLGHNDISGSIPDE---------VGDLRGLNILDLSS 689 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCC----GGGGGCTTCCEEECCSSCCCSCCCGG---------GGGCTTCCEEECCS
T ss_pred cCchhhhccccccEEECcCCcccccCC----HHHhccccCCEEeCcCCccCCCCChH---------HhCCCCCCEEECCC
Confidence 00011 3345555666555322 22356899999999999887 44433 88999999999999
Q ss_pred ccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecccCcccee
Q 037920 428 CRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLM 493 (505)
Q Consensus 428 c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 493 (505)
|.--..+ +... ..+++|+.|++++++--..++. .+.+.++....+.|+|.|-.
T Consensus 690 N~l~g~i--p~~l-------~~l~~L~~L~ls~N~l~g~iP~----~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 690 NKLDGRI--PQAM-------SALTMLTEIDLSNNNLSGPIPE----MGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp SCCEECC--CGGG-------GGCCCCSEEECCSSEEEEECCS----SSSGGGSCGGGGCSCTEEES
T ss_pred CcccCcC--ChHH-------hCCCCCCEEECcCCcccccCCC----chhhccCCHHHhcCCchhcC
Confidence 9843344 4433 4569999999999986566665 45677777778888877653
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.6e-26 Score=233.39 Aligned_cols=329 Identities=16% Similarity=0.215 Sum_probs=245.2
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccc
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSL 141 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l 141 (505)
++..++....++++++|++++|.+..++....+++|+.|++ .++.+..++. +.++++|++|++++|.++.++. +
T Consensus 57 ~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l---~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~ 130 (466)
T 1o6v_A 57 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILM---NNNQIADITP--LANLTNLTGLTLFNNQITDIDP-L 130 (466)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC---CSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred CCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEEC---CCCccccChh--hcCCCCCCEEECCCCCCCCChH-H
Confidence 34556667789999999999999988887779999999999 5666666666 6899999999999999999876 8
Q ss_pred cCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEE
Q 037920 142 GLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELY 221 (505)
Q Consensus 142 ~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 221 (505)
..+++|++|++++|.+..++.++.+++|+.|++. +.+..++ .+.++++|++|++++| .+..++. +..+++|++|+
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~ 205 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLK-PLANLTTLERLDISSN-KVSDISV--LAKLTNLESLI 205 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEE
T ss_pred cCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCch-hhccCCCCCEEECcCC-cCCCChh--hccCCCCCEEE
Confidence 9999999999999999886678899999999996 4555554 3888999999999984 4555554 78899999999
Q ss_pred eeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccch
Q 037920 222 IGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLK 301 (505)
Q Consensus 222 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 301 (505)
+++|.+.... + +..+++|+.|++++|.+..++....+++|+.|++..+. +...
T Consensus 206 l~~n~l~~~~-------~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~------------------l~~~ 258 (466)
T 1o6v_A 206 ATNNQISDIT-------P--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ------------------ISNL 258 (466)
T ss_dssp CCSSCCCCCG-------G--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC------------------CCCC
T ss_pred ecCCcccccc-------c--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc------------------cccc
Confidence 9988875432 2 66788899999998888877544348888888875321 1111
Q ss_pred hhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcccccccc-chhcchhhhhhhhcccccccc
Q 037920 302 DGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREE-STDVMQSHEIILKVNVNALFV 380 (505)
Q Consensus 302 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~-l~~l~~~~~~~~~~~~~~~~~ 380 (505)
.. ...+++|+.|++++| .+..++. + ..+++|+.|++++|.-.....+..++ ++.+++..+.+.+...
T Consensus 259 ~~-~~~l~~L~~L~l~~n---~l~~~~~-~--~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~----- 326 (466)
T 1o6v_A 259 AP-LSGLTKLTELKLGAN---QISNISP-L--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP----- 326 (466)
T ss_dssp GG-GTTCTTCSEEECCSS---CCCCCGG-G--TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-----
T ss_pred hh-hhcCCCCCEEECCCC---ccCcccc-c--cCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-----
Confidence 11 223678888888887 3333443 3 56788888888887743333344443 4556666665555321
Q ss_pred ccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccC
Q 037920 381 EKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDD 460 (505)
Q Consensus 381 ~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~ 460 (505)
...+++|+.|++++|++..+.. +..+++|++|++++|. ++.+.. ...+++|+.|++++
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~~~----------l~~l~~L~~L~l~~n~-l~~~~~----------~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDVSS----------LANLTNINWLSAGHNQ-ISDLTP----------LANLTRITQLGLND 384 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG----------GTTCTTCCEEECCSSC-CCBCGG----------GTTCTTCCEEECCC
T ss_pred -hccCccCCEeECCCCccCCchh----------hccCCCCCEEeCCCCc-cCccch----------hhcCCCCCEEeccC
Confidence 3468999999999998877632 7789999999999987 555521 23568999999988
Q ss_pred cc
Q 037920 461 LE 462 (505)
Q Consensus 461 ~~ 462 (505)
|+
T Consensus 385 n~ 386 (466)
T 1o6v_A 385 QA 386 (466)
T ss_dssp EE
T ss_pred Cc
Confidence 86
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.8e-26 Score=234.36 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=66.1
Q ss_pred CCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCee
Q 037920 73 KLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTL 150 (505)
Q Consensus 73 ~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L 150 (505)
+++++|++++|.+..++. ...+++|++|++ .++.+..+++..|.++++|++|++++|.++.+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L---s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILII---SHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEEC---CSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEec---CCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEE
Confidence 556666666666555442 235556666666 33334444333345566666666666665555544 55666666
Q ss_pred EeeccCCCC---cccccCCCCCcEEEccCCCCcccchhhhCCCCC--CEEeeeCCC
Q 037920 151 SLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLPIEVSELARL--RLLGLRDCR 201 (505)
Q Consensus 151 ~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~ 201 (505)
++++|.+.. |..++.+++|++|++++|.++. ..+..+++| ++|++++|.
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccc
Confidence 666665544 3455566666666666655544 234445555 666665543
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=252.44 Aligned_cols=137 Identities=22% Similarity=0.281 Sum_probs=116.7
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-c
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-P 138 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~ 138 (505)
+++.++. .++++++|++++|.+..+.. ...+++|++|++ +++.....+++..|.++++|++|++++|.+..+ |
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdL--s~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLEL--GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEE--CTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeC--CCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 5666776 78999999999999977643 349999999999 555577778666679999999999999999985 7
Q ss_pred ccccCCCCCCeeEeeccCCCC--ccc--ccCCCCCcEEEccCCCCccc--chhhhCCCCCCEEeeeCCCC
Q 037920 139 SSLGLLSNLRTLSLDNCKLLD--ITV--VRDLKKLEILCLRGSNIKML--PIEVSELARLRLLGLRDCRE 202 (505)
Q Consensus 139 ~~l~~l~~L~~L~L~~~~l~~--~~~--i~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~ 202 (505)
..+.++++|++|++++|.+.+ +.. ++++++|++|++++|.++.+ +..++++++|++|++++|..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 899999999999999999886 444 89999999999999999876 35789999999999999543
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=6.3e-27 Score=246.21 Aligned_cols=192 Identities=17% Similarity=0.225 Sum_probs=155.3
Q ss_pred CcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEee
Q 037920 75 YTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLD 153 (505)
Q Consensus 75 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~ 153 (505)
-++++.+++.++.+|... .+++++|++ .++.+..++...|.++++|++|++++|.++.+ |..+.++++|++|+++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~L---s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDL---SFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcccCCCCC-CCCcCEEEC---CCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 467899999999998754 389999999 66667777776679999999999999999986 5678999999999999
Q ss_pred ccCCCC--cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCC-ccChhhhcCCCCccEEEeeCCCCCC
Q 037920 154 NCKLLD--ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELE-VIPANVLSNLSHLEELYIGYNSFGK 229 (505)
Q Consensus 154 ~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~ 229 (505)
+|.+.. |..++++++|++|++++|.++.++ ..++++++|++|++++|.... .+|.. ++.+++|++|++++|.+..
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCccee
Confidence 999888 688999999999999999999886 679999999999999965433 46776 8999999999999998853
Q ss_pred chhhhhccccccccCCCCcC----EEEeecccCCCCCCCCC-CCCCcEEEEEEc
Q 037920 230 WEVEMEGVKNASLHELKHLT----SLELHIKDVNTLPRGLF-FPKLQRYKIHIG 278 (505)
Q Consensus 230 ~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~l~~~~~-~~~L~~L~~~~~ 278 (505)
..+..+..+++|+ .|++++|.+..++.... ..+|+.|++..+
T Consensus 168 -------~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 168 -------ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp -------ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred -------cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 3344455554443 78888888776665543 446667666543
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.3e-26 Score=243.81 Aligned_cols=382 Identities=15% Similarity=0.143 Sum_probs=186.5
Q ss_pred cccCCCcEEEecCCCCccCC--CCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCC
Q 037920 70 SAIKLYTSIVLHDIRTNLLP--EVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSN 146 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~ 146 (505)
..++++++|++++|.+..++ ....+++|++|++ .++.+..++...+..+++|++|++++|.++.+ |..+..+++
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL---GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC---CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEEC---CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 45667777777777776552 2336777777777 44444433211123467777777777766664 345666666
Q ss_pred CC--eeEeeccCCCC-cccccCCC----------------------------------------------------CCcE
Q 037920 147 LR--TLSLDNCKLLD-ITVVRDLK----------------------------------------------------KLEI 171 (505)
Q Consensus 147 L~--~L~L~~~~l~~-~~~i~~l~----------------------------------------------------~L~~ 171 (505)
|+ .|++++|.+.. ++...... +|+.
T Consensus 179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 66 56666665554 21111111 3445
Q ss_pred EEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCE
Q 037920 172 LCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTS 250 (505)
Q Consensus 172 L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 250 (505)
|++++|.++.++. .+..+++|++|++++ +.+..+|.. ++.+++|++|++++|.+. +..+..+..+++|+.
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~lp~~-l~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTA-THLSELPSG-LVGLSTLKKLVLSANKFE-------NLCQISASNFPSLTH 329 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTT-SCCSCCCSS-CCSCTTCCEEECTTCCCS-------BGGGGCGGGCTTCSE
T ss_pred EEeecCccCccCHHHhccccCCCEEeccC-CccCCCChh-hcccccCCEEECccCCcC-------cCchhhhhccCcCCE
Confidence 5555555554432 255556666666655 344455554 455566666666655552 222344555555555
Q ss_pred EEeecccCC-CCCCCC-C-CCCCcEEEEEEcceeecc----c-----ccceEEecCCCCccchhhHHHHhcceeEEeecC
Q 037920 251 LELHIKDVN-TLPRGL-F-FPKLQRYKIHIGGYYYAG----V-----WRRELKICPDSKIRLKDGLIVQLQGIEDLGLSK 318 (505)
Q Consensus 251 L~l~~~~~~-~l~~~~-~-~~~L~~L~~~~~~~~~~~----~-----~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 318 (505)
|++++|.+. .++... . +++|+.|++..+...... . .-..+.+..+............+++|+.|++++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 555555443 333321 1 555555554322111000 0 000011111111111111112255666666666
Q ss_pred CCCCCcchhhhh-hhccCCCCccEEEEeCCCC--CCcccccccc-chhcchhhhhhhhcccccccccccccccccccccc
Q 037920 319 LPEQDVDYFVNE-LAKVGPSQLKHLHIWNHPP--NPAESKRREE-STDVMQSHEIILKVNVNALFVEKVTLPKLENLELD 394 (505)
Q Consensus 319 ~~~~~~~~~~~~-l~~~~l~~L~~L~l~~~~~--~~~~~l~~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 394 (505)
| ......+.. + ..+++|++|++++|.- .....+..++ ++.++++.+.+.+.... .......+++|+.|+++
T Consensus 410 n--~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 410 T--RLKVKDAQSPF--QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLS 484 (606)
T ss_dssp C--CEECCTTCCTT--TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECT
T ss_pred C--cCCCcccchhh--hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc-cchhhccCCCccEEECC
Confidence 5 222222221 3 4566666666666652 1111222222 33444444444431110 01122346677777777
Q ss_pred ccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCccc
Q 037920 395 SINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDI 474 (505)
Q Consensus 395 ~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 474 (505)
+|++..+.+.. +..+++|++|++++|. ++.+. ++. ...+++| .|+++++. +..+. |..+
T Consensus 485 ~n~l~~~~~~~--------~~~l~~L~~L~Ls~N~-l~~~~-~~~-------l~~l~~L-~L~L~~N~-l~~~~--~~~~ 543 (606)
T 3t6q_A 485 FCDLSSIDQHA--------FTSLKMMNHVDLSHNR-LTSSS-IEA-------LSHLKGI-YLNLASNH-ISIIL--PSLL 543 (606)
T ss_dssp TSCCCEECTTT--------TTTCTTCCEEECCSSC-CCGGG-GGG-------GTTCCSC-EEECCSSC-CCCCC--GGGH
T ss_pred CCccCccChhh--------hccccCCCEEECCCCc-cCcCC-hhH-------hCccccc-EEECcCCc-ccccC--Hhhc
Confidence 77666553321 5667777777777775 44332 111 2344666 67777765 33322 2235
Q ss_pred ccCCCccceecccCc
Q 037920 475 LEFPSLKELIINRCP 489 (505)
Q Consensus 475 ~~~~~L~~L~i~~C~ 489 (505)
..+++|+.|+++++|
T Consensus 544 ~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 544 PILSQQRTINLRQNP 558 (606)
T ss_dssp HHHHTSSEEECTTCC
T ss_pred ccCCCCCEEeCCCCC
Confidence 567788888888765
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=3.5e-26 Score=237.63 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=135.5
Q ss_pred ccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc--CcccccCC
Q 037920 69 ESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS--LPSSLGLL 144 (505)
Q Consensus 69 ~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~l~~l 144 (505)
...++++++|++++|.+..++. ...+++|++|++ +++.+..++...|.++++|++|++++|.++. .|..+..+
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L---s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL---SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC---TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEEC---CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 4568899999999999977764 349999999999 6677778888778999999999999999985 46789999
Q ss_pred CCCCeeEeeccC-CCC-c-ccccCCCCCcEEEccCCCCcc-cchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEE
Q 037920 145 SNLRTLSLDNCK-LLD-I-TVVRDLKKLEILCLRGSNIKM-LPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEEL 220 (505)
Q Consensus 145 ~~L~~L~L~~~~-l~~-~-~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 220 (505)
++|++|++++|. +.. + ..++.+++|++|++++|+++. .|..+.++++|++|++++| ....++...++.+++|++|
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYL 201 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC-cccccchhhHhhcccccEE
Confidence 999999999998 444 3 689999999999999999986 5788999999999999984 4566666545789999999
Q ss_pred EeeCCCCCCc
Q 037920 221 YIGYNSFGKW 230 (505)
Q Consensus 221 ~l~~~~~~~~ 230 (505)
++++|.+...
T Consensus 202 ~L~~n~l~~~ 211 (549)
T 2z81_A 202 ELRDTNLARF 211 (549)
T ss_dssp EEESCBCTTC
T ss_pred EccCCccccc
Confidence 9999988653
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=4.8e-26 Score=237.75 Aligned_cols=384 Identities=15% Similarity=0.125 Sum_probs=227.0
Q ss_pred ccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCC
Q 037920 69 ESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLS 145 (505)
Q Consensus 69 ~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~ 145 (505)
...++++++|++++|.+..++. ...+++|++|++ .++.+..+++..|.++++|++|++++|.++.++. .++.++
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL---TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEEC---TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeC---cCCcCCccCHhhhcCccccccccccccccccCCCccccccc
Confidence 4568899999999999987764 348999999999 6666777776667999999999999999998775 689999
Q ss_pred CCCeeEeeccCCCC---cccccCCCCCcEEEccCCCCccc-chhhhCCCCC----CEEeeeCCCCCCccChhhhcCCCCc
Q 037920 146 NLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKML-PIEVSELARL----RLLGLRDCRELEVIPANVLSNLSHL 217 (505)
Q Consensus 146 ~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L----~~L~l~~~~~~~~~~~~~~~~l~~L 217 (505)
+|++|++++|.+.. |..++++++|++|++++|+++.+ |..+..+++| +.|++++ +.+..++...+.. .+|
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~-n~l~~~~~~~~~~-~~L 202 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKE-IRL 202 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT-CCCCEECTTTTTT-CEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC-CCceecCHHHhcc-Ccc
Confidence 99999999999875 68899999999999999999876 4567777777 7888887 4444554442333 256
Q ss_pred cEEEeeCCCCCCchh---------------------------------------------------hhhccccccccCCC
Q 037920 218 EELYIGYNSFGKWEV---------------------------------------------------EMEGVKNASLHELK 246 (505)
Q Consensus 218 ~~L~l~~~~~~~~~~---------------------------------------------------~~~~~~~~~l~~l~ 246 (505)
++|++++|....... .+.+..+..+..++
T Consensus 203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~ 282 (570)
T 2z63_A 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282 (570)
T ss_dssp EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence 666666542110000 00122344455566
Q ss_pred CcCEEEeecccCCCCCCCCC-CCCCcEEEEEEcceeecc--c--ccceEEecC----------------------CCCcc
Q 037920 247 HLTSLELHIKDVNTLPRGLF-FPKLQRYKIHIGGYYYAG--V--WRRELKICP----------------------DSKIR 299 (505)
Q Consensus 247 ~L~~L~l~~~~~~~l~~~~~-~~~L~~L~~~~~~~~~~~--~--~~~~l~l~~----------------------~~~~~ 299 (505)
+|+.|+++++.+..+|..+. + +|+.|++..+....-. . .-..+.+.. +....
T Consensus 283 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~ 361 (570)
T 2z63_A 283 NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361 (570)
T ss_dssp TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred cccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCc
Confidence 66777766666666665544 3 5555555433211000 0 000022222 11100
Q ss_pred c---hhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCC---Ccccccccc-chhcchhhhhhhh
Q 037920 300 L---KDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPN---PAESKRREE-STDVMQSHEIILK 372 (505)
Q Consensus 300 ~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~---~~~~l~~L~-l~~l~~~~~~~~~ 372 (505)
. +..+ ..+++|+.|++++| ....++..+ ..+++|++|++++|.-. ....+..++ ++.++++.+.+.+
T Consensus 362 ~~~~~~~~-~~~~~L~~L~l~~n---~l~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 362 KGCCSQSD-FGTTSLKYLDLSFN---GVITMSSNF--LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp EEEEEHHH-HTCSCCCEEECCSC---SEEEEEEEE--ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred cccccccc-cccCccCEEECCCC---ccccccccc--cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 0 1111 22455555555554 233333333 44555555555555411 001122221 2233333333332
Q ss_pred cccccccccccccccccccccccccccc--ccccceeeccCccccccccccEEEEccccccccceecccccccccccccc
Q 037920 373 VNVNALFVEKVTLPKLENLELDSINVER--IWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIF 450 (505)
Q Consensus 373 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~ 450 (505)
... .....+++|+.|++++|++.. ++.. +..+++|++|++++|. ++.+. +. ....+
T Consensus 436 ~~~----~~~~~l~~L~~L~l~~n~l~~~~~p~~---------~~~l~~L~~L~l~~n~-l~~~~-~~-------~~~~l 493 (570)
T 2z63_A 436 AFN----GIFNGLSSLEVLKMAGNSFQENFLPDI---------FTELRNLTFLDLSQCQ-LEQLS-PT-------AFNSL 493 (570)
T ss_dssp CCT----TTTTTCTTCCEEECTTCEEGGGEECSC---------CTTCTTCCEEECTTSC-CCEEC-TT-------TTTTC
T ss_pred cch----hhhhcCCcCcEEECcCCcCccccchhh---------hhcccCCCEEECCCCc-cccCC-hh-------hhhcc
Confidence 110 111246666666666665542 2211 5667777777777775 44332 11 13456
Q ss_pred cccccccccCcccccccccCCcccccCCCccceecccCc
Q 037920 451 PQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCP 489 (505)
Q Consensus 451 p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~ 489 (505)
++|+.|++++|. +..+.. ..+..+++|+.|+++++|
T Consensus 494 ~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 494 SSLQVLNMASNQ-LKSVPD--GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCCEEECCSSC-CSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred cCCCEEeCCCCc-CCCCCH--HHhhcccCCcEEEecCCc
Confidence 888888888874 544432 235678888888888864
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=4.6e-26 Score=226.25 Aligned_cols=302 Identities=17% Similarity=0.196 Sum_probs=201.1
Q ss_pred ccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCC
Q 037920 71 AIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNL 147 (505)
Q Consensus 71 ~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L 147 (505)
..+++++++++++.+..+|.. ..+++|++|++ .++.+..++...|..+++|++|++++|.++.++ ..+..+++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L---~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL---NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEEC---TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEEC---CCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 457788888888888777764 27788888888 555566666555678888888888888887754 456788888
Q ss_pred CeeEeeccCCCC-ccc-ccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeC
Q 037920 148 RTLSLDNCKLLD-ITV-VRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGY 224 (505)
Q Consensus 148 ~~L~L~~~~l~~-~~~-i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 224 (505)
++|++++|.+.. +.. ++.+++|++|++++|+++.++ ..+.++++|++|++++ +.+..++ ++.+++|+.|++++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSY 195 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeeccc
Confidence 888888888777 443 577888888888888877664 4577788888888887 4445543 46677888888887
Q ss_pred CCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhH
Q 037920 225 NSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGL 304 (505)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 304 (505)
|.+.. +...++|+.|++++|.+..+|... .++|+.|++..+ .+.....+
T Consensus 196 n~l~~------------~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n------------------~l~~~~~l 244 (390)
T 3o6n_A 196 NLLST------------LAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHN------------------NLTDTAWL 244 (390)
T ss_dssp SCCSE------------EECCSSCSEEECCSSCCCEEECCC-CSSCCEEECCSS------------------CCCCCGGG
T ss_pred ccccc------------cCCCCcceEEECCCCeeeeccccc-cccccEEECCCC------------------CCcccHHH
Confidence 76632 334457888888888777665543 566777665421 11111222
Q ss_pred HHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccc
Q 037920 305 IVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVT 384 (505)
Q Consensus 305 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~ 384 (505)
..+++|+.|++++| ......|..+ ..+++|++|++++|.-. + +......
T Consensus 245 -~~l~~L~~L~Ls~n--~l~~~~~~~~--~~l~~L~~L~L~~n~l~---------------------~-----~~~~~~~ 293 (390)
T 3o6n_A 245 -LNYPGLVEVDLSYN--ELEKIMYHPF--VKMQRLERLYISNNRLV---------------------A-----LNLYGQP 293 (390)
T ss_dssp -GGCTTCSEEECCSS--CCCEEESGGG--TTCSSCCEEECCSSCCC---------------------E-----EECSSSC
T ss_pred -cCCCCccEEECCCC--cCCCcChhHc--cccccCCEEECCCCcCc---------------------c-----cCcccCC
Confidence 23677777777777 3333345555 56777777777776511 0 1111135
Q ss_pred ccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920 385 LPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE 462 (505)
Q Consensus 385 ~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 462 (505)
+|+|+.|++++|++..++.. +..+++|++|++++|. ++.+. ...+++|+.|++++++
T Consensus 294 l~~L~~L~L~~n~l~~~~~~---------~~~l~~L~~L~L~~N~-i~~~~-----------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLLHVERN---------QPQFDRLENLYLDHNS-IVTLK-----------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CTTCCEEECCSSCCCCCGGG---------HHHHTTCSEEECCSSC-CCCCC-----------CCTTCCCSEEECCSSC
T ss_pred CCCCCEEECCCCcceecCcc---------ccccCcCCEEECCCCc-cceeC-----------chhhccCCEEEcCCCC
Confidence 77788888888877666443 5667788888888776 55441 2345778888877766
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=5.8e-26 Score=225.49 Aligned_cols=306 Identities=15% Similarity=0.216 Sum_probs=239.2
Q ss_pred CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEeeccCCCC--cccccCCC
Q 037920 91 VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLD--ITVVRDLK 167 (505)
Q Consensus 91 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~ 167 (505)
...+++++.|++ .++.+..+|..+|..+++|++|++++|.++.++. .+..+++|++|++++|.+.. +..++.++
T Consensus 41 ~~~l~~l~~l~l---~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 41 DITLNNQKIVTF---KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp SGGGCCCSEEEE---ESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccccCCceEEEe---cCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 346789999999 6777888999989999999999999999998664 89999999999999999988 46789999
Q ss_pred CCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCC
Q 037920 168 KLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELK 246 (505)
Q Consensus 168 ~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 246 (505)
+|++|++++|+++.+|.. +.++++|++|++++ +.+..++...++.+++|++|++++|.+... .+..++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~l~ 186 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHV----------DLSLIP 186 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBC----------CGGGCT
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCcc----------cccccc
Confidence 999999999999999876 58999999999999 455666655589999999999999988542 356789
Q ss_pred CcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcch
Q 037920 247 HLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDY 326 (505)
Q Consensus 247 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 326 (505)
+|+.|++++|.+..++. .++|+.|++..+.... .+. ..+++|+.|++++| .+..
T Consensus 187 ~L~~L~l~~n~l~~~~~---~~~L~~L~l~~n~l~~-----------------~~~---~~~~~L~~L~l~~n---~l~~ 240 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLAI---PIAVEELDASHNSINV-----------------VRG---PVNVELTILKLQHN---NLTD 240 (390)
T ss_dssp TCSEEECCSSCCSEEEC---CSSCSEEECCSSCCCE-----------------EEC---CCCSSCCEEECCSS---CCCC
T ss_pred ccceeecccccccccCC---CCcceEEECCCCeeee-----------------ccc---cccccccEEECCCC---CCcc
Confidence 99999999998876543 4578887765321110 010 11478999999998 3333
Q ss_pred hhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccce
Q 037920 327 FVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHV 406 (505)
Q Consensus 327 ~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 406 (505)
. .++ ..+++|++|++++|... +. .......+++|+.|++++|+++.++..
T Consensus 241 ~-~~l--~~l~~L~~L~Ls~n~l~---------------------~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 290 (390)
T 3o6n_A 241 T-AWL--LNYPGLVEVDLSYNELE---------------------KI----MYHPFVKMQRLERLYISNNRLVALNLY-- 290 (390)
T ss_dssp C-GGG--GGCTTCSEEECCSSCCC---------------------EE----ESGGGTTCSSCCEEECCSSCCCEEECS--
T ss_pred c-HHH--cCCCCccEEECCCCcCC---------------------Cc----ChhHccccccCCEEECCCCcCcccCcc--
Confidence 3 345 67899999999998611 10 111223689999999999988887543
Q ss_pred eeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecc
Q 037920 407 AVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIIN 486 (505)
Q Consensus 407 ~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~ 486 (505)
...+|+|++|++++|. ++.+ +.. ...+++|+.|++++++ +..++ +..+++|+.|+++
T Consensus 291 -------~~~l~~L~~L~L~~n~-l~~~--~~~-------~~~l~~L~~L~L~~N~-i~~~~-----~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 291 -------GQPIPTLKVLDLSHNH-LLHV--ERN-------QPQFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLS 347 (390)
T ss_dssp -------SSCCTTCCEEECCSSC-CCCC--GGG-------HHHHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECC
T ss_pred -------cCCCCCCCEEECCCCc-ceec--Ccc-------ccccCcCCEEECCCCc-cceeC-----chhhccCCEEEcC
Confidence 5678999999999996 6655 332 3457999999999997 44432 5678999999999
Q ss_pred cCc
Q 037920 487 RCP 489 (505)
Q Consensus 487 ~C~ 489 (505)
++|
T Consensus 348 ~N~ 350 (390)
T 3o6n_A 348 HND 350 (390)
T ss_dssp SSC
T ss_pred CCC
Confidence 974
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2e-25 Score=226.40 Aligned_cols=368 Identities=18% Similarity=0.216 Sum_probs=241.3
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-c
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-P 138 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~ 138 (505)
+++.++. .++++++|++++|.+..++. ...+++|++|++ .++.....++...|.++++|++|++++|.++.+ |
T Consensus 21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKV--EQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEEC--CCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEEC--cCCcccceECcccccccccCCEEeCCCCccCccCh
Confidence 4556665 56889999999999977633 348999999999 455455577776679999999999999999885 7
Q ss_pred ccccCCCCCCeeEeeccCCCC--ccc--ccCCCCCcEEEccCCCCccc-chh-hhCCCCCCEEeeeCCCCCCccChhhhc
Q 037920 139 SSLGLLSNLRTLSLDNCKLLD--ITV--VRDLKKLEILCLRGSNIKML-PIE-VSELARLRLLGLRDCRELEVIPANVLS 212 (505)
Q Consensus 139 ~~l~~l~~L~~L~L~~~~l~~--~~~--i~~l~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~ 212 (505)
..+..+++|++|++++|.+.+ +.. ++.+++|++|++++|+++.+ |.. +.++++|++|++++|. +...+...+.
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~ 175 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLL 175 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhh
Confidence 789999999999999999887 444 88999999999999999877 544 7899999999999954 4444333255
Q ss_pred CC--CCccEEEeeCCCCCCchhh-hhccccccccCCCCcCEEEeecccCCC-CCCCCC----CCCCcEEEEEEcceeecc
Q 037920 213 NL--SHLEELYIGYNSFGKWEVE-MEGVKNASLHELKHLTSLELHIKDVNT-LPRGLF----FPKLQRYKIHIGGYYYAG 284 (505)
Q Consensus 213 ~l--~~L~~L~l~~~~~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~-l~~~~~----~~~L~~L~~~~~~~~~~~ 284 (505)
.+ .+|+.|++++|.+...... +.......+..+++|+.|++++|.+.. .|..+. .++++.+.+..+......
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 54 6899999999988654320 000111234567889999999998763 333221 366777665322100000
Q ss_pred cccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcc
Q 037920 285 VWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVM 364 (505)
Q Consensus 285 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~ 364 (505)
.....+......... .-..++|+.|++++| ......|..+ ..+++|++|++++|.-...
T Consensus 256 --~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~n--~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~------------ 314 (455)
T 3v47_A 256 --FGHTNFKDPDNFTFK---GLEASGVKTCDLSKS--KIFALLKSVF--SHFTDLEQLTLAQNEINKI------------ 314 (455)
T ss_dssp --TTCCSSCCCCTTTTG---GGTTSCCCEEECCSS--CCCEECTTTT--TTCTTCCEEECTTSCCCEE------------
T ss_pred --cchhhhccCcccccc---cccccCceEEEecCc--cccccchhhc--ccCCCCCEEECCCCccccc------------
Confidence 000000000000000 001368999999988 4455556666 7789999999988862110
Q ss_pred hhhhhhhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccc
Q 037920 365 QSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERK 444 (505)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~ 444 (505)
.......+++|++|++++|++..+.+.. +..+++|++|++++|. ++.+. +.
T Consensus 315 -------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~l~~L~~L~Ls~N~-l~~~~-~~------ 365 (455)
T 3v47_A 315 -------------DDNAFWGLTHLLKLNLSQNFLGSIDSRM--------FENLDKLEVLDLSYNH-IRALG-DQ------ 365 (455)
T ss_dssp -------------CTTTTTTCTTCCEEECCSSCCCEECGGG--------GTTCTTCCEEECCSSC-CCEEC-TT------
T ss_pred -------------ChhHhcCcccCCEEECCCCccCCcChhH--------hcCcccCCEEECCCCc-ccccC-hh------
Confidence 0011124677777778777766653321 5667777888877775 44442 11
Q ss_pred cccccccccccccccCcccccccccCCcccccCCCccceecccC
Q 037920 445 NSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRC 488 (505)
Q Consensus 445 ~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C 488 (505)
....+++|++|+++++. +++++. ..+..+++|+.|+++++
T Consensus 366 -~~~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 366 -SFLGLPNLKELALDTNQ-LKSVPD--GIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp -TTTTCTTCCEEECCSSC-CSCCCT--TTTTTCTTCCEEECCSS
T ss_pred -hccccccccEEECCCCc-cccCCH--hHhccCCcccEEEccCC
Confidence 12345777777777764 444432 12456777777777765
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.6e-26 Score=234.48 Aligned_cols=370 Identities=12% Similarity=0.126 Sum_probs=256.4
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeec
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDN 154 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~ 154 (505)
+++++++|.++.+|.... ++|++|++ .++.+..++...|.++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~L---s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNI---SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEEC---CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc-ccccEEEC---CCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 689999999998987555 89999999 66667777766679999999999999999986 67899999999999999
Q ss_pred cCCCC-cccccCCCCCcEEEccCCCCcc--cchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCc--cEEEeeCCCC--
Q 037920 155 CKLLD-ITVVRDLKKLEILCLRGSNIKM--LPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHL--EELYIGYNSF-- 227 (505)
Q Consensus 155 ~~l~~-~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~-- 227 (505)
|.+.. |.. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.+
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred CceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccc
Confidence 99988 444 89999999999999986 57889999999999999954 333 226677777 9999998876
Q ss_pred CCchh-hhh-------------------------------------------------ccccccccC-------------
Q 037920 228 GKWEV-EME-------------------------------------------------GVKNASLHE------------- 244 (505)
Q Consensus 228 ~~~~~-~~~-------------------------------------------------~~~~~~l~~------------- 244 (505)
..... .+. +.++ .+..
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 21110 000 0000 1111
Q ss_pred --------------CCCcCEEEeecccCC-CCCCCC-----C-CCCCcEEEEEEcceeecc---------cccceEEecC
Q 037920 245 --------------LKHLTSLELHIKDVN-TLPRGL-----F-FPKLQRYKIHIGGYYYAG---------VWRRELKICP 294 (505)
Q Consensus 245 --------------l~~L~~L~l~~~~~~-~l~~~~-----~-~~~L~~L~~~~~~~~~~~---------~~~~~l~l~~ 294 (505)
.++|+.|++++|.+. .+|..+ . +++|+.+++..+...... ..-..+.+..
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEES
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCC
Confidence 237888888888887 778775 2 555666665544331110 0011244444
Q ss_pred CCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcc----cccccc-chhcchhhhh
Q 037920 295 DSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAE----SKRREE-STDVMQSHEI 369 (505)
Q Consensus 295 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~----~l~~L~-l~~l~~~~~~ 369 (505)
....... ....+++|+.|++++| ......|..+ ..+++|++|++++|.....+ .+..++ ++.++++.+.
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n--~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNN--LLTDTVFENC--GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSS--CCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred Ccccccc--chhhCCcccEEEeECC--ccChhhhhhh--ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 2222111 0023788999999998 4444567777 78899999999998844321 133333 5566666666
Q ss_pred hhhccccccccccccccccccccccccccccccccceeeccCcccccc-ccccEEEEccccccccceecccccccccccc
Q 037920 370 ILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTF-VRLQRIEIKNCRVLEELIVVENQEERKNSIV 448 (505)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~ 448 (505)
+.+..... ....+++|+.|++++|++....+ ..+ ++|++|++++|. ++.+ +... .
T Consensus 386 l~~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~~-----------~~l~~~L~~L~Ls~N~-l~~i--p~~~-------~ 441 (520)
T 2z7x_B 386 VSYDEKKG---DCSWTKSLLSLNMSSNILTDTIF-----------RCLPPRIKVLDLHSNK-IKSI--PKQV-------V 441 (520)
T ss_dssp CBCCGGGC---SCCCCTTCCEEECCSSCCCGGGG-----------GSCCTTCCEEECCSSC-CCCC--CGGG-------G
T ss_pred CCcccccc---hhccCccCCEEECcCCCCCcchh-----------hhhcccCCEEECCCCc-cccc--chhh-------h
Confidence 65521111 12357899999999998754321 222 799999999996 7666 4333 2
Q ss_pred cccccccccccCcccccccccCCcccccCCCccceecccCc
Q 037920 449 IFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCP 489 (505)
Q Consensus 449 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~ 489 (505)
.+++|++|+++++. ++.++.. .+..+++|+.|+++++|
T Consensus 442 ~l~~L~~L~L~~N~-l~~l~~~--~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 442 KLEALQELNVASNQ-LKSVPDG--IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp GCTTCCEEECCSSC-CCCCCTT--TTTTCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCc-CCccCHH--HhccCCcccEEECcCCC
Confidence 56999999999985 6665441 26779999999999985
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.9e-25 Score=238.06 Aligned_cols=164 Identities=18% Similarity=0.198 Sum_probs=127.6
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS 139 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 139 (505)
+++.++. ...+++++|++++|.+..++. ..++++|++|++ .++.+..+++..|.++++|++|++++|.++.+|.
T Consensus 15 ~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 15 KLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV---GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp CCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEEC---CSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred Ccccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEEC---CCCccCccCHHHHhcccCcCEEECCCCccCccCh
Confidence 3444443 345789999999999988775 348899999999 5555666666667889999999999999998876
Q ss_pred -cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhc--C
Q 037920 140 -SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLS--N 213 (505)
Q Consensus 140 -~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~--~ 213 (505)
.+..+++|++|++++|.+.. + ..++++++|++|++++|.++.. |..+.++++|++|++++| .+..++...+. .
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccc
Confidence 58899999999999999887 3 6788999999999999988765 456788999999999884 45555543333 5
Q ss_pred CCCccEEEeeCCCCCCc
Q 037920 214 LSHLEELYIGYNSFGKW 230 (505)
Q Consensus 214 l~~L~~L~l~~~~~~~~ 230 (505)
+++|++|++++|.+...
T Consensus 170 ~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEF 186 (680)
T ss_dssp TCEESEEECTTCCCCCB
T ss_pred cccccEEECCCCccccc
Confidence 57888888888877543
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=4.4e-25 Score=225.24 Aligned_cols=311 Identities=19% Similarity=0.232 Sum_probs=174.9
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeec
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDN 154 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~ 154 (505)
+.++.+++.+..+|... .++++.|++ .++.+..++...|.++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDL---GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEEC---CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEEC---CCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555555554322 245555555 33444444433345555556666555555553 44555555566666655
Q ss_pred cCCCC-c-ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCch
Q 037920 155 CKLLD-I-TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWE 231 (505)
Q Consensus 155 ~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 231 (505)
|.+.. + ..++.+++|++|++++|+++.+ |..+.++++|++|++++ +.+..++...+..+++|++|++++|.+...+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 55555 2 3345555566666655555544 33455555566665555 2333333322555555666666555553221
Q ss_pred hhhhccccccccCCCCcCEEEeecccCCCCCCCCC--CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhc
Q 037920 232 VEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQ 309 (505)
Q Consensus 232 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 309 (505)
+..+..+++|+.|++++|.+..++.... +++|+.|++..+... . ..+..... ..
T Consensus 169 -------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~--------------~--~~~~~~~~-~~ 224 (477)
T 2id5_A 169 -------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL--------------D--TMTPNCLY-GL 224 (477)
T ss_dssp -------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC--------------C--EECTTTTT-TC
T ss_pred -------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc--------------c--ccCccccc-Cc
Confidence 2335555555666655555554333221 455555554321100 0 00001111 34
Q ss_pred ceeEEeecCCCCCCcchhhh-hhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccccc
Q 037920 310 GIEDLGLSKLPEQDVDYFVN-ELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKL 388 (505)
Q Consensus 310 ~L~~L~l~~~~~~~~~~~~~-~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L 388 (505)
+|+.|++++| .++.+|. .+ ..+++|+.|++++|.... +. . .....+++|
T Consensus 225 ~L~~L~l~~n---~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~------~~----------------~---~~~~~l~~L 274 (477)
T 2id5_A 225 NLTSLSITHC---NLTAVPYLAV--RHLVYLRFLNLSYNPIST------IE----------------G---SMLHELLRL 274 (477)
T ss_dssp CCSEEEEESS---CCCSCCHHHH--TTCTTCCEEECCSSCCCE------EC----------------T---TSCTTCTTC
T ss_pred cccEEECcCC---cccccCHHHh--cCccccCeeECCCCcCCc------cC----------------h---hhccccccC
Confidence 8999999998 4555664 44 778999999999986111 00 1 112358899
Q ss_pred ccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920 389 ENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE 462 (505)
Q Consensus 389 ~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 462 (505)
+.|++++|++..+.+.. +..+++|++|++++|. ++.+. .. ....+++|+.|++.+++
T Consensus 275 ~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~N~-l~~~~--~~------~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 275 QEIQLVGGQLAVVEPYA--------FRGLNYLRVLNVSGNQ-LTTLE--ES------VFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCSSCCSEECTTT--------BTTCTTCCEEECCSSC-CSCCC--GG------GBSCGGGCCEEECCSSC
T ss_pred CEEECCCCccceECHHH--------hcCcccCCEEECCCCc-CceeC--Hh------HcCCCcccCEEEccCCC
Confidence 99999999888774432 6788999999999996 66652 21 13456999999998887
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=8.8e-25 Score=227.55 Aligned_cols=373 Identities=16% Similarity=0.148 Sum_probs=193.2
Q ss_pred CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEe
Q 037920 74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSL 152 (505)
Q Consensus 74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L 152 (505)
..++++++++.++.+|.... +++++|++ .++.+..++...|.++++|++|++++|.++.+ |..+..+++|++|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~L---s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSL---SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEEC---CSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEEC---CCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 34666666666666665332 66666766 44445555544456666777777777666664 455666667777777
Q ss_pred eccCCCC-cccccCCCCCcEEEccCCCCcccc--hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCc--cEEEeeCCCC
Q 037920 153 DNCKLLD-ITVVRDLKKLEILCLRGSNIKMLP--IEVSELARLRLLGLRDCRELEVIPANVLSNLSHL--EELYIGYNSF 227 (505)
Q Consensus 153 ~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 227 (505)
++|.+.. |.. .+++|++|++++|+++.+| ..++++++|++|++++|. +.... +..+++| ++|++++|.+
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 7666666 333 6666777777766666543 566666677777766632 22211 3333444 6666666655
Q ss_pred --CCchh-hhhc------------------cccccccCCC----------------------------------------
Q 037920 228 --GKWEV-EMEG------------------VKNASLHELK---------------------------------------- 246 (505)
Q Consensus 228 --~~~~~-~~~~------------------~~~~~l~~l~---------------------------------------- 246 (505)
..... .+.. .....+..++
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 21110 0000 0000111122
Q ss_pred ---------------CcCEEEeecccCC-CCCCCCC---CCCCcEEEEEEcceeec-c-----------cccceEEecCC
Q 037920 247 ---------------HLTSLELHIKDVN-TLPRGLF---FPKLQRYKIHIGGYYYA-G-----------VWRRELKICPD 295 (505)
Q Consensus 247 ---------------~L~~L~l~~~~~~-~l~~~~~---~~~L~~L~~~~~~~~~~-~-----------~~~~~l~l~~~ 295 (505)
+|+.|++++|.+. .+|..+. ..+++.|.+.......- . .....+.+...
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 4555555555554 4555431 14455544432211100 0 00001222221
Q ss_pred CCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcc----cccccc-chhcchhhhhh
Q 037920 296 SKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAE----SKRREE-STDVMQSHEII 370 (505)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~----~l~~L~-l~~l~~~~~~~ 370 (505)
...+.. ....+++|+.|++++| ......|..+ ..+++|++|++++|.-...+ .+..+. ++.++++.+.+
T Consensus 342 ~~~~~~--~~~~l~~L~~L~l~~n--~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 342 PFIHMV--CPPSPSSFTFLNFTQN--VFTDSVFQGC--STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSS--CCCTTTTTTC--CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred Cccccc--CccCCCCceEEECCCC--ccccchhhhh--cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 111110 0022567777777776 3333455555 66777777777777632211 122222 34455555554
Q ss_pred hhccccccccccccccccccccccccccccccccceeeccCcccccc-ccccEEEEccccccccceeccccccccccccc
Q 037920 371 LKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTF-VRLQRIEIKNCRVLEELIVVENQEERKNSIVI 449 (505)
Q Consensus 371 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~ 449 (505)
.+...... ...+++|+.|++++|++.... ...+ ++|++|++++|. ++.+ +... ..
T Consensus 416 ~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~-----------~~~l~~~L~~L~L~~N~-l~~i--p~~~-------~~ 471 (562)
T 3a79_B 416 NSHAYDRT---CAWAESILVLNLSSNMLTGSV-----------FRCLPPKVKVLDLHNNR-IMSI--PKDV-------TH 471 (562)
T ss_dssp BSCCSSCC---CCCCTTCCEEECCSSCCCGGG-----------GSSCCTTCSEEECCSSC-CCCC--CTTT-------TS
T ss_pred CCccChhh---hcCcccCCEEECCCCCCCcch-----------hhhhcCcCCEEECCCCc-Cccc--Chhh-------cC
Confidence 44111111 124566777777776654321 1223 578888888774 6655 3322 24
Q ss_pred ccccccccccCcccccccccCCcccccCCCccceecccCc
Q 037920 450 FPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCP 489 (505)
Q Consensus 450 ~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~ 489 (505)
+++|+.|+++++. ++.++.. .+..+++|+.|+++++|
T Consensus 472 l~~L~~L~L~~N~-l~~l~~~--~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 472 LQALQELNVASNQ-LKSVPDG--VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SCCCSEEECCSSC-CCCCCTT--STTTCTTCCCEECCSCC
T ss_pred CCCCCEEECCCCC-CCCCCHH--HHhcCCCCCEEEecCCC
Confidence 5888888888875 5554431 26678888888888864
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=5.3e-25 Score=222.25 Aligned_cols=313 Identities=15% Similarity=0.141 Sum_probs=223.7
Q ss_pred cccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCC
Q 037920 68 DESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNL 147 (505)
Q Consensus 68 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L 147 (505)
....++++++|++++|.+..+|....+++|++|++ .++.+..++ +..+++|++|++++|.++.++ ++.+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L---s~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLIC---TSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEEC---CSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEc---cCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcC
Confidence 34568999999999999998887779999999999 555666665 588999999999999999985 8899999
Q ss_pred CeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920 148 RTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 148 ~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
++|++++|.+..++ ++.+++|++|++++|+++.++ ++.+++|++|++++|..++.++ ++.+++|++|++++|.+
T Consensus 109 ~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcc
Confidence 99999999998853 889999999999999999875 7899999999999987777773 68899999999999988
Q ss_pred CCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHH
Q 037920 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQ 307 (505)
Q Consensus 228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 307 (505)
.. ++ +..+++|+.|++++|.+..++ ...+++|+.|++..+.. ..++ ...
T Consensus 183 ~~--------l~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l---------------~~ip-----~~~ 231 (457)
T 3bz5_A 183 TE--------LD--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKL---------------TEID-----VTP 231 (457)
T ss_dssp CC--------CC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCC---------------SCCC-----CTT
T ss_pred ce--------ec--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcc---------------cccC-----ccc
Confidence 43 33 788999999999999988764 22277777777643211 1111 123
Q ss_pred hcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccc
Q 037920 308 LQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPK 387 (505)
Q Consensus 308 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (505)
+++|+.|++++| .+..+| . ..+++|+.|+++.+. ++.+++..+...+.. +...+++
T Consensus 232 l~~L~~L~l~~N---~l~~~~--~--~~l~~L~~L~l~~n~-----------L~~L~l~~n~~~~~~------~~~~l~~ 287 (457)
T 3bz5_A 232 LTQLTYFDCSVN---PLTELD--V--STLSKLTTLHCIQTD-----------LLEIDLTHNTQLIYF------QAEGCRK 287 (457)
T ss_dssp CTTCSEEECCSS---CCSCCC--C--TTCTTCCEEECTTCC-----------CSCCCCTTCTTCCEE------ECTTCTT
T ss_pred cCCCCEEEeeCC---cCCCcC--H--HHCCCCCEEeccCCC-----------CCEEECCCCccCCcc------ccccccc
Confidence 677888888877 333333 2 456777777776654 222333333322211 1235788
Q ss_pred ccccccccc-ccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920 388 LENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE 462 (505)
Q Consensus 388 L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 462 (505)
|+.|++++| .+..++.....+..-. +..+++|++|+++++. ++.+ ....+++|+.|+++++.
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~-l~~~~~L~~L~L~~N~-l~~l-----------~l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELD-LSQNPKLVYLYLNNTE-LTEL-----------DVSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCCEEECTTCC-CSCC-----------CCTTCTTCSEEECCSSC
T ss_pred CCEEECCCCcccceeccCCCcceEec-hhhcccCCEEECCCCc-cccc-----------ccccCCcCcEEECCCCC
Confidence 888888888 5555543211111110 4555666777766665 4433 12345777777777664
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=9.7e-26 Score=228.71 Aligned_cols=321 Identities=14% Similarity=0.130 Sum_probs=222.1
Q ss_pred cccccCCCcEEEecCCCCc-cCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc-Cccc--c
Q 037920 68 DESAIKLYTSIVLHDIRTN-LLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS-LPSS--L 141 (505)
Q Consensus 68 ~~~~~~~l~~l~l~~~~~~-~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~--l 141 (505)
....++++++|++++|.+. .++. ...+++|++|++ .++.+..++...|.++++|++|++++|.++. .|.. +
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L---s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 125 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL---DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC---TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT
T ss_pred HhccCccccEEECcCCcccceECcccccccccCCEEeC---CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccc
Confidence 3456889999999999884 5543 348999999999 5555666655556899999999999999986 4444 8
Q ss_pred cCCCCCCeeEeeccCCCC--ccc-ccCCCCCcEEEccCCCCccc-chhhhCC--CCCCEEeeeCCCCCCccChhh-----
Q 037920 142 GLLSNLRTLSLDNCKLLD--ITV-VRDLKKLEILCLRGSNIKML-PIEVSEL--ARLRLLGLRDCRELEVIPANV----- 210 (505)
Q Consensus 142 ~~l~~L~~L~L~~~~l~~--~~~-i~~l~~L~~L~l~~~~l~~l-p~~i~~l--~~L~~L~l~~~~~~~~~~~~~----- 210 (505)
..+++|++|++++|.+.. +.. ++.+++|++|++++|.++.. |..+..+ .+|+.|++++|. +..++...
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~ 204 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEK 204 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHH
T ss_pred cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc-ccccchhhccccc
Confidence 899999999999999988 443 88999999999999998866 4556655 789999998844 44443221
Q ss_pred ---hcCCCCccEEEeeCCCCCCchhhhhccccccccC---CCCcCEEEeecccCCCCC----------CCC----CCCCC
Q 037920 211 ---LSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHE---LKHLTSLELHIKDVNTLP----------RGL----FFPKL 270 (505)
Q Consensus 211 ---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~l~----------~~~----~~~~L 270 (505)
+..+++|++|++++|.+.. ..+..+.. ..+|+.|+++++...... ... ..++|
T Consensus 205 ~~~~~~~~~L~~L~Ls~n~l~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 277 (455)
T 3v47_A 205 CGNPFKNTSITTLDLSGNGFKE-------SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277 (455)
T ss_dssp HCCTTTTCEEEEEECTTSCCCH-------HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC
T ss_pred cccccccceeeeEecCCCcccc-------cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCc
Confidence 2356889999999998843 33333333 377888888876432110 000 13567
Q ss_pred cEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCC
Q 037920 271 QRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPN 350 (505)
Q Consensus 271 ~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~ 350 (505)
+.+++..+. ...........+++|+.|++++| ......|..+ ..+++|++|++++|.-.
T Consensus 278 ~~L~l~~n~-----------------l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~--~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 278 KTCDLSKSK-----------------IFALLKSVFSHFTDLEQLTLAQN--EINKIDDNAF--WGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp CEEECCSSC-----------------CCEECTTTTTTCTTCCEEECTTS--CCCEECTTTT--TTCTTCCEEECCSSCCC
T ss_pred eEEEecCcc-----------------ccccchhhcccCCCCCEEECCCC--cccccChhHh--cCcccCCEEECCCCccC
Confidence 777664221 11111112233789999999998 4444445566 67899999999998611
Q ss_pred CccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccc
Q 037920 351 PAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRV 430 (505)
Q Consensus 351 ~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~ 430 (505)
. + .......+++|++|++++|++..+.+.. +..+++|++|++++|.
T Consensus 337 ~------~-------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~l~~L~~L~L~~N~- 382 (455)
T 3v47_A 337 S------I-------------------DSRMFENLDKLEVLDLSYNHIRALGDQS--------FLGLPNLKELALDTNQ- 382 (455)
T ss_dssp E------E-------------------CGGGGTTCTTCCEEECCSSCCCEECTTT--------TTTCTTCCEEECCSSC-
T ss_pred C------c-------------------ChhHhcCcccCCEEECCCCcccccChhh--------ccccccccEEECCCCc-
Confidence 0 0 0111235788999999988877764321 6778899999998876
Q ss_pred cccceecccccccccccccccccccccccCcc
Q 037920 431 LEELIVVENQEERKNSIVIFPQLQYLKMDDLE 462 (505)
Q Consensus 431 l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 462 (505)
++.+. ... ...+++|+.|++++++
T Consensus 383 l~~~~--~~~------~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 383 LKSVP--DGI------FDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CSCCC--TTT------TTTCTTCCEEECCSSC
T ss_pred cccCC--HhH------hccCCcccEEEccCCC
Confidence 66552 211 2456888888888766
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=222.21 Aligned_cols=301 Identities=18% Similarity=0.163 Sum_probs=235.3
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS 139 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 139 (505)
++..++. ...+++++|++++|.+..++. ...+++|++|++ .++.+..+++..|.++++|++|++++|.++.+|.
T Consensus 22 ~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L---~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 22 RFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL---NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred CcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEEC---CCCccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence 3445543 456789999999999987753 348999999999 5566666655567999999999999999999876
Q ss_pred -cccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCC
Q 037920 140 -SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLS 215 (505)
Q Consensus 140 -~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 215 (505)
.+..+++|++|++++|.+.. +..+..+++|++|++++|.++.+ +..+..+++|++|++++ +.+..++...+..++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~ 176 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLH 176 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccC
Confidence 47899999999999999988 57889999999999999999877 45789999999999999 566778876689999
Q ss_pred CccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccC-CCCCCCCC-CCCCcEEEEEEcceeecccccceEEec
Q 037920 216 HLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDV-NTLPRGLF-FPKLQRYKIHIGGYYYAGVWRRELKIC 293 (505)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~~~-~~~L~~L~~~~~~~~~~~~~~~~l~l~ 293 (505)
+|+.|++++|.+. +..+..+..+++|+.|++++|.. ..++.... ..+|+.|++..+.
T Consensus 177 ~L~~L~l~~n~i~-------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-------------- 235 (477)
T 2id5_A 177 GLIVLRLRHLNIN-------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-------------- 235 (477)
T ss_dssp TCCEEEEESCCCC-------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC--------------
T ss_pred CCcEEeCCCCcCc-------EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc--------------
Confidence 9999999999884 34456789999999999998764 45665544 5689999886321
Q ss_pred CCCCccchhhHHHHhcceeEEeecCCCCCCcchhh-hhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhh
Q 037920 294 PDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFV-NELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILK 372 (505)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~ 372 (505)
-...+......+++|+.|++++| . +..++ ..+ ..+++|++|++++|... +
T Consensus 236 ---l~~~~~~~~~~l~~L~~L~Ls~n--~-l~~~~~~~~--~~l~~L~~L~L~~n~l~---------------------~ 286 (477)
T 2id5_A 236 ---LTAVPYLAVRHLVYLRFLNLSYN--P-ISTIEGSML--HELLRLQEIQLVGGQLA---------------------V 286 (477)
T ss_dssp ---CCSCCHHHHTTCTTCCEEECCSS--C-CCEECTTSC--TTCTTCCEEECCSSCCS---------------------E
T ss_pred ---ccccCHHHhcCccccCeeECCCC--c-CCccChhhc--cccccCCEEECCCCccc---------------------e
Confidence 11233334445899999999998 3 33444 344 77899999999998611 1
Q ss_pred ccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEcccc
Q 037920 373 VNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR 429 (505)
Q Consensus 373 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~ 429 (505)
. .......+++|+.|++++|+++.++... +..+++|++|++++++
T Consensus 287 ~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 287 V----EPYAFRGLNYLRVLNVSGNQLTTLEESV--------FHSVGNLETLILDSNP 331 (477)
T ss_dssp E----CTTTBTTCTTCCEEECCSSCCSCCCGGG--------BSCGGGCCEEECCSSC
T ss_pred E----CHHHhcCcccCCEEECCCCcCceeCHhH--------cCCCcccCEEEccCCC
Confidence 0 0112236889999999999888875432 5778999999999876
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=7.4e-25 Score=233.58 Aligned_cols=388 Identities=17% Similarity=0.156 Sum_probs=227.7
Q ss_pred ccccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCC
Q 037920 69 ESAIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLS 145 (505)
Q Consensus 69 ~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~ 145 (505)
...++++++|++++|.+..++.. ..+++|++|++ .++.+..+|...|.++++|++|++++|.++.++ ..++.++
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL---QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEEC---CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEEC---CCCccCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence 45678999999999999777543 28999999999 666677888776789999999999999998876 5789999
Q ss_pred CCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccchh-h--hCCCCCCEEeeeCCCCCCccChhhhcCC------
Q 037920 146 NLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPIE-V--SELARLRLLGLRDCRELEVIPANVLSNL------ 214 (505)
Q Consensus 146 ~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i--~~l~~L~~L~l~~~~~~~~~~~~~~~~l------ 214 (505)
+|++|++++|.+.. +..++++++|++|++++|.++.++.. + ..+++|++|++++| .+..++...+..+
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEE
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhh
Confidence 99999999999887 57788999999999999998877543 3 35688999999885 4444443324433
Q ss_pred ---------------------CCccEEEeeCCCCCCchhhhhccccccccCCCC--cCEEEeecccCCCCCC-CCC-CCC
Q 037920 215 ---------------------SHLEELYIGYNSFGKWEVEMEGVKNASLHELKH--LTSLELHIKDVNTLPR-GLF-FPK 269 (505)
Q Consensus 215 ---------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~l~~-~~~-~~~ 269 (505)
++|+.|++++|.+ .+..+..+..++. |+.|++++|.+..++. .+. +++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l-------~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL-------STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC-------CEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcc-------cccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc
Confidence 3455555555544 2333444555543 7777777776664432 222 666
Q ss_pred CcEEEEEEcceeeccc-------ccceEEecCC---C-----Cccc-hhhHHHHhcceeEEeecCCCCCCcchhhhhhhc
Q 037920 270 LQRYKIHIGGYYYAGV-------WRRELKICPD---S-----KIRL-KDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAK 333 (505)
Q Consensus 270 L~~L~~~~~~~~~~~~-------~~~~l~l~~~---~-----~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 333 (505)
|+.|++..+....... .-..+.+... + .++. .......+++|+.|++++| ......+..+
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~-- 349 (680)
T 1ziw_A 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN--DIPGIKSNMF-- 349 (680)
T ss_dssp CCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC--CBCCCCTTTT--
T ss_pred ccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC--ccCCCChhHh--
Confidence 6666664332111000 0000222210 0 0000 0001123677888888887 3222333344
Q ss_pred cCCCCccEEEEeCCCC----CCccccccc---cchhcchhhhhhhhcccccccccccccccccccccccccccc-ccccc
Q 037920 334 VGPSQLKHLHIWNHPP----NPAESKRRE---ESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVER-IWQSH 405 (505)
Q Consensus 334 ~~l~~L~~L~l~~~~~----~~~~~l~~L---~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~ 405 (505)
..+++|++|++++|.. +....+..+ .++.+++..+.+.+.... ....+++|+.|++++|.+.. ++...
T Consensus 350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~ 425 (680)
T 1ziw_A 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD----AFSWLGHLEVLDLGLNEIGQELTGQE 425 (680)
T ss_dssp TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCEEECCSGG
T ss_pred ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh----hhhCCCCCCEEeCCCCcCccccCccc
Confidence 6678888888877741 111111111 233444444444432111 11346677777777775543 21110
Q ss_pred eeeccCccccccccccEEEEccccccccceeccccc-------------------ccccccccccccccccccCcccccc
Q 037920 406 VAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQE-------------------ERKNSIVIFPQLQYLKMDDLEKLRN 466 (505)
Q Consensus 406 ~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~-------------------~~~~~~~~~p~L~~L~l~~~~~L~~ 466 (505)
+..+++|++|++++|. +..+.. .... ........+++|+.|+++++. +..
T Consensus 426 --------~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~ 494 (680)
T 1ziw_A 426 --------WRGLENIFEIYLSYNK-YLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IAN 494 (680)
T ss_dssp --------GTTCTTCCEEECCSCS-EEECCT-TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCC
T ss_pred --------ccCcccccEEecCCCC-cceeCh-hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCc
Confidence 4445555555555554 222210 0000 000123455677777777764 443
Q ss_pred cccCCcccccCCCccceecccC
Q 037920 467 FCTGDVDILEFPSLKELIINRC 488 (505)
Q Consensus 467 ~~~~~~~~~~~~~L~~L~i~~C 488 (505)
++. ..+..+++|+.|+++++
T Consensus 495 i~~--~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 495 IND--DMLEGLEKLEILDLQHN 514 (680)
T ss_dssp CCT--TTTTTCTTCCEEECCSS
T ss_pred CCh--hhhccccccCEEeCCCC
Confidence 322 23566788888888877
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.6e-25 Score=232.88 Aligned_cols=301 Identities=17% Similarity=0.214 Sum_probs=181.8
Q ss_pred cCCCcEEEecCCCCccCCCCC--CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCC
Q 037920 72 IKLYTSIVLHDIRTNLLPEVV--ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLR 148 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~ 148 (505)
+.+++.++++++.+..+|... .+++|++|++ .++.+..++...|..+++|++|++++|.++.+|+ .++.+++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL---NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEEC---TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEEC---CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 456677777777666666532 5667777777 4444555554445667777777777777666543 356677777
Q ss_pred eeEeeccCCCC-cc-cccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCC
Q 037920 149 TLSLDNCKLLD-IT-VVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225 (505)
Q Consensus 149 ~L~L~~~~l~~-~~-~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 225 (505)
+|++++|.+.. |. .++.+++|++|++++|.++.++ ..+.++++|++|++++ +.+..++ ++.+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccC
Confidence 77777776666 43 3466777777777777666553 3466667777777766 3344443 355666777777666
Q ss_pred CCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHH
Q 037920 226 SFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLI 305 (505)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 305 (505)
.+.. +...++|+.|++++|.+..++... .++|+.|++..+ .+..+.++.
T Consensus 203 ~l~~------------l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n------------------~l~~~~~l~ 251 (597)
T 3oja_B 203 LLST------------LAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHN------------------NLTDTAWLL 251 (597)
T ss_dssp CCSE------------EECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSS------------------CCCCCGGGG
T ss_pred cccc------------ccCCchhheeeccCCccccccccc-CCCCCEEECCCC------------------CCCCChhhc
Confidence 5532 333456777777777666555443 355666655321 111112222
Q ss_pred HHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccc
Q 037920 306 VQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTL 385 (505)
Q Consensus 306 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~ 385 (505)
.+++|+.|++++| ......|..+ ..+++|+.|++++|.- .+ +......+
T Consensus 252 -~l~~L~~L~Ls~N--~l~~~~~~~~--~~l~~L~~L~Ls~N~l---------------------~~-----l~~~~~~l 300 (597)
T 3oja_B 252 -NYPGLVEVDLSYN--ELEKIMYHPF--VKMQRLERLYISNNRL---------------------VA-----LNLYGQPI 300 (597)
T ss_dssp -GCTTCSEEECCSS--CCCEEESGGG--TTCSSCCEEECTTSCC---------------------CE-----EECSSSCC
T ss_pred -cCCCCCEEECCCC--ccCCCCHHHh--cCccCCCEEECCCCCC---------------------CC-----CCcccccC
Confidence 2667777777776 3334445555 5677777777777651 11 11112347
Q ss_pred cccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920 386 PKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE 462 (505)
Q Consensus 386 ~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 462 (505)
|+|+.|++++|.+..++.. +..+++|++|++++|. ++.+. ...+++|+.|++++++
T Consensus 301 ~~L~~L~Ls~N~l~~i~~~---------~~~l~~L~~L~L~~N~-l~~~~-----------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 301 PTLKVLDLSHNHLLHVERN---------QPQFDRLENLYLDHNS-IVTLK-----------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TTCCEEECCSSCCCCCGGG---------HHHHTTCSEEECCSSC-CCCCC-----------CCTTCCCSEEECCSSC
T ss_pred CCCcEEECCCCCCCccCcc---------cccCCCCCEEECCCCC-CCCcC-----------hhhcCCCCEEEeeCCC
Confidence 7888888888877666443 5677888888888876 44331 2345778888887766
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.3e-25 Score=232.14 Aligned_cols=305 Identities=15% Similarity=0.209 Sum_probs=239.0
Q ss_pred CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccCCCC-c-ccccCCCC
Q 037920 92 VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKK 168 (505)
Q Consensus 92 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~ 168 (505)
..+.+++.+++ .++.+..+|..+|..+++|++|++++|.++.++ ..+..+++|++|++++|.+.. + ..++.+++
T Consensus 48 l~l~~l~~l~l---~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 48 ITLNNQKIVTF---KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GGGCCCSEEEE---SSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCCCceEEEe---eCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 36789999999 777888999999999999999999999999865 489999999999999999988 4 66799999
Q ss_pred CcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCC
Q 037920 169 LEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKH 247 (505)
Q Consensus 169 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~ 247 (505)
|++|++++|.++.+|.. ++++++|++|++++| .+..++...++.+++|++|++++|.+... .+..+++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~l~~ 193 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV----------DLSLIPS 193 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC----------CGGGCTT
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc----------Chhhhhh
Confidence 99999999999999876 589999999999995 55566654489999999999999988542 2567889
Q ss_pred cCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchh
Q 037920 248 LTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYF 327 (505)
Q Consensus 248 L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 327 (505)
|+.|++++|.+..++. ..+|+.|+++.+.... .+. ...++|+.|++++|. +..
T Consensus 194 L~~L~l~~n~l~~l~~---~~~L~~L~ls~n~l~~-----------------~~~---~~~~~L~~L~L~~n~---l~~- 246 (597)
T 3oja_B 194 LFHANVSYNLLSTLAI---PIAVEELDASHNSINV-----------------VRG---PVNVELTILKLQHNN---LTD- 246 (597)
T ss_dssp CSEEECCSSCCSEEEC---CTTCSEEECCSSCCCE-----------------EEC---SCCSCCCEEECCSSC---CCC-
T ss_pred hhhhhcccCccccccC---CchhheeeccCCcccc-----------------ccc---ccCCCCCEEECCCCC---CCC-
Confidence 9999999998876543 5678888765322110 000 114689999999982 333
Q ss_pred hhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccccccccccccccccccccccee
Q 037920 328 VNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVA 407 (505)
Q Consensus 328 ~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 407 (505)
+.++ ..+++|+.|++++|.- .+. .......+++|+.|++++|++..++..
T Consensus 247 ~~~l--~~l~~L~~L~Ls~N~l---------------------~~~----~~~~~~~l~~L~~L~Ls~N~l~~l~~~--- 296 (597)
T 3oja_B 247 TAWL--LNYPGLVEVDLSYNEL---------------------EKI----MYHPFVKMQRLERLYISNNRLVALNLY--- 296 (597)
T ss_dssp CGGG--GGCTTCSEEECCSSCC---------------------CEE----ESGGGTTCSSCCEEECTTSCCCEEECS---
T ss_pred Chhh--ccCCCCCEEECCCCcc---------------------CCC----CHHHhcCccCCCEEECCCCCCCCCCcc---
Confidence 2455 6789999999999861 111 111224689999999999988887543
Q ss_pred eccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceeccc
Q 037920 408 VMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINR 487 (505)
Q Consensus 408 v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~ 487 (505)
...+|+|++|++++|. ++.+ +.. ...+++|+.|+++++. +..++ +..+++|+.|++++
T Consensus 297 ------~~~l~~L~~L~Ls~N~-l~~i--~~~-------~~~l~~L~~L~L~~N~-l~~~~-----~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 297 ------GQPIPTLKVLDLSHNH-LLHV--ERN-------QPQFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLSH 354 (597)
T ss_dssp ------SSCCTTCCEEECCSSC-CCCC--GGG-------HHHHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECCS
T ss_pred ------cccCCCCcEEECCCCC-CCcc--Ccc-------cccCCCCCEEECCCCC-CCCcC-----hhhcCCCCEEEeeC
Confidence 5679999999999997 6655 332 3457999999999997 44432 56789999999999
Q ss_pred Cc
Q 037920 488 CP 489 (505)
Q Consensus 488 C~ 489 (505)
+|
T Consensus 355 N~ 356 (597)
T 3oja_B 355 ND 356 (597)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=2.6e-24 Score=208.60 Aligned_cols=295 Identities=17% Similarity=0.221 Sum_probs=200.5
Q ss_pred CccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEeeccCCCC--cccccCCCCCcEE
Q 037920 96 QLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEIL 172 (505)
Q Consensus 96 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L 172 (505)
+++.+++ .......+|..+ .++|++|++++|.++.++. .+..+++|++|++++|.+.. +..++.+++|++|
T Consensus 32 ~l~~l~~---~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQC---SDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEEC---TTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEe---cCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 5666666 444455565533 3577788888888877654 67788888888888888777 4677888888888
Q ss_pred EccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEE
Q 037920 173 CLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE 252 (505)
Q Consensus 173 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 252 (505)
++++|.++.+|..+. ++|++|++++ +.+..++...+..+++|++|++++|.+.. .+..+..+..+++|+.|+
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS-----SGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTTGGGGCTTCCEEE
T ss_pred ECCCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCc-----cCcChhhccCCCCcCEEE
Confidence 888888887776554 6888888887 45666666657888888888888887743 234456778888899999
Q ss_pred eecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhh
Q 037920 253 LHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELA 332 (505)
Q Consensus 253 l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 332 (505)
+++|.+..+|... .++|+.|++++| ......+..+
T Consensus 178 l~~n~l~~l~~~~------------------------------------------~~~L~~L~l~~n--~l~~~~~~~~- 212 (330)
T 1xku_A 178 IADTNITTIPQGL------------------------------------------PPSLTELHLDGN--KITKVDAASL- 212 (330)
T ss_dssp CCSSCCCSCCSSC------------------------------------------CTTCSEEECTTS--CCCEECTGGG-
T ss_pred CCCCccccCCccc------------------------------------------cccCCEEECCCC--cCCccCHHHh-
Confidence 9888887776542 356777777777 3333334555
Q ss_pred ccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCc
Q 037920 333 KVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCV 412 (505)
Q Consensus 333 ~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~ 412 (505)
..+++|++|++++|.-. +.. . .....+++|++|++++|++..++..
T Consensus 213 -~~l~~L~~L~Ls~n~l~---------------------~~~-~---~~~~~l~~L~~L~L~~N~l~~lp~~-------- 258 (330)
T 1xku_A 213 -KGLNNLAKLGLSFNSIS---------------------AVD-N---GSLANTPHLRELHLNNNKLVKVPGG-------- 258 (330)
T ss_dssp -TTCTTCCEEECCSSCCC---------------------EEC-T---TTGGGSTTCCEEECCSSCCSSCCTT--------
T ss_pred -cCCCCCCEEECCCCcCc---------------------eeC-h---hhccCCCCCCEEECCCCcCccCChh--------
Confidence 67888888888887611 000 0 1123578888899988887776543
Q ss_pred cccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecccC
Q 037920 413 SNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRC 488 (505)
Q Consensus 413 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C 488 (505)
+..+++|++|++++|. ++.+....... . ......+.|+.|++.+.| +..+...|..+..+++++.++++++
T Consensus 259 -l~~l~~L~~L~l~~N~-i~~~~~~~f~~-~-~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 259 -LADHKYIQVVYLHNNN-ISAIGSNDFCP-P-GYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -TTTCSSCCEEECCSSC-CCCCCTTSSSC-S-SCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred -hccCCCcCEEECCCCc-CCccChhhcCC-c-ccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 6778889999999886 66663211110 0 112235788888998888 3333333445777888999988875
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=8.5e-25 Score=212.15 Aligned_cols=296 Identities=17% Similarity=0.214 Sum_probs=198.7
Q ss_pred CccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEE
Q 037920 96 QLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEIL 172 (505)
Q Consensus 96 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L 172 (505)
+++.+++ .......+|..+ .++|++|++++|.++.++ ..+..+++|++|++++|.+.. +..++.+++|++|
T Consensus 34 ~l~~l~~---~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQC---SDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEEC---CSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEEC---CCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 5777777 455556666644 367888888888887754 467888888888888888777 4678888888888
Q ss_pred EccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEE
Q 037920 173 CLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE 252 (505)
Q Consensus 173 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 252 (505)
++++|.++.+|..+. ++|++|++++ +.+..++...+..+++|++|++++|.+.. .+..+..+..+ +|+.|+
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLEN-----SGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBG-----GGSCTTSSCSC-CCSCCB
T ss_pred ECCCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCcccc-----CCCCcccccCC-ccCEEE
Confidence 888888888776554 7888888887 55666666557888888888888887743 12345566666 888888
Q ss_pred eecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhh
Q 037920 253 LHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELA 332 (505)
Q Consensus 253 l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 332 (505)
+++|.+..+|... .++|+.|++++| ......+..+
T Consensus 179 l~~n~l~~l~~~~------------------------------------------~~~L~~L~l~~n--~i~~~~~~~l- 213 (332)
T 2ft3_A 179 ISEAKLTGIPKDL------------------------------------------PETLNELHLDHN--KIQAIELEDL- 213 (332)
T ss_dssp CCSSBCSSCCSSS------------------------------------------CSSCSCCBCCSS--CCCCCCTTSS-
T ss_pred CcCCCCCccCccc------------------------------------------cCCCCEEECCCC--cCCccCHHHh-
Confidence 8888887777652 256677777776 2222233444
Q ss_pred ccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCc
Q 037920 333 KVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCV 412 (505)
Q Consensus 333 ~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~ 412 (505)
..+++|+.|++++|.-... . . .....+++|+.|++++|++..++..
T Consensus 214 -~~l~~L~~L~L~~N~l~~~---------------------~-~---~~~~~l~~L~~L~L~~N~l~~lp~~-------- 259 (332)
T 2ft3_A 214 -LRYSKLYRLGLGHNQIRMI---------------------E-N---GSLSFLPTLRELHLDNNKLSRVPAG-------- 259 (332)
T ss_dssp -TTCTTCSCCBCCSSCCCCC---------------------C-T---TGGGGCTTCCEEECCSSCCCBCCTT--------
T ss_pred -cCCCCCCEEECCCCcCCcC---------------------C-h---hHhhCCCCCCEEECCCCcCeecChh--------
Confidence 6678888888888751110 0 0 0123578888888888887777543
Q ss_pred cccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecccCcc
Q 037920 413 SNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPE 490 (505)
Q Consensus 413 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~ 490 (505)
+..+++|++|+++++. ++.+.... .... .....+++|+.|++.+++ +..+...+..+..+++|+.++++++.+
T Consensus 260 -l~~l~~L~~L~l~~N~-l~~~~~~~-~~~~-~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 260 -LPDLKLLQVVYLHTNN-ITKVGVND-FCPV-GFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp -GGGCTTCCEEECCSSC-CCBCCTTS-SSCS-SCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred -hhcCccCCEEECCCCC-CCccChhH-cccc-ccccccccccceEeecCc-ccccccCcccccccchhhhhhcccccC
Confidence 6778889999998886 66663211 1110 011225788999999888 332222344577889999999988753
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.6e-24 Score=225.54 Aligned_cols=356 Identities=14% Similarity=0.101 Sum_probs=229.8
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS 139 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 139 (505)
+++.++. ...+++++|++++|.+..++. ...+++|++|++ +++.+..+++..|.++++|++|++++|.++.+|.
T Consensus 42 ~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 117 (562)
T 3a79_B 42 NLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRL---SHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC 117 (562)
T ss_dssp CCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEEC---CSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS
T ss_pred CCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEEC---CCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc
Confidence 3455553 345899999999999988874 449999999999 6666777766667999999999999999999987
Q ss_pred cccCCCCCCeeEeeccCCCC---cccccCCCCCcEEEccCCCCcccchhhhCCCCC--CEEeeeCCCC--CCccChhhhc
Q 037920 140 SLGLLSNLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIKMLPIEVSELARL--RLLGLRDCRE--LEVIPANVLS 212 (505)
Q Consensus 140 ~l~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~~~~~~~ 212 (505)
. .+++|++|++++|.+.. |..++++++|++|++++|.++.. .+..+++| ++|++++|.. ....|.. +.
T Consensus 118 ~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~ 192 (562)
T 3a79_B 118 C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETES-LQ 192 (562)
T ss_dssp C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCE-EE
T ss_pred c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccc-cc
Confidence 7 89999999999999887 37899999999999999988753 44555555 9999988544 2222221 22
Q ss_pred --------------------------CCC---------------------------------------------------
Q 037920 213 --------------------------NLS--------------------------------------------------- 215 (505)
Q Consensus 213 --------------------------~l~--------------------------------------------------- 215 (505)
.++
T Consensus 193 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 272 (562)
T 3a79_B 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272 (562)
T ss_dssp ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh
Confidence 222
Q ss_pred ----CccEEEeeCCCCCCchhhhhccccccc-----cCCCCcCEEEeecccCCCCCCCCC-----CCCCcEEEEEEccee
Q 037920 216 ----HLEELYIGYNSFGKWEVEMEGVKNASL-----HELKHLTSLELHIKDVNTLPRGLF-----FPKLQRYKIHIGGYY 281 (505)
Q Consensus 216 ----~L~~L~l~~~~~~~~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~l~~~~~-----~~~L~~L~~~~~~~~ 281 (505)
+|++|++++|.+ .+.+|..+ .+++.|+.+++..+.+ .+|.... ..+++.|.+..+...
T Consensus 273 ~~~~~L~~L~l~~n~l-------~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTI-------TERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HTTSSEEEEEEEEEEE-------CSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred hhcccccEEEEeccEe-------eccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcc
Confidence 344444444443 24455554 4454444444444443 3331100 122344443322111
Q ss_pred ecc---c--ccceEEecCCCCcc-chhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCC---CCc
Q 037920 282 YAG---V--WRRELKICPDSKIR-LKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPP---NPA 352 (505)
Q Consensus 282 ~~~---~--~~~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~---~~~ 352 (505)
... . .-..+.+..+.-.. .+..+ ..+++|+.|++++|....+..+|..+ ..+++|++|++++|.- ++.
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMT--KNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTT--TTCTTCCEEECTTSCCBSCCSS
T ss_pred cccCccCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhhh--cCCCCCCEEECCCCcCCCccCh
Confidence 000 0 00002222211111 12222 23788999999998333333555556 7789999999999873 222
Q ss_pred ccccccc-chhcchhhhhhhhccccccccccccc-cccccccccccccccccccceeeccCccccccccccEEEEccccc
Q 037920 353 ESKRREE-STDVMQSHEIILKVNVNALFVEKVTL-PKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRV 430 (505)
Q Consensus 353 ~~l~~L~-l~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~ 430 (505)
..+..+. ++.++++.+.+.+.... .+ ++|+.|++++|+++.++.+ +..+++|++|++++|.
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~-------~l~~~L~~L~L~~N~l~~ip~~---------~~~l~~L~~L~L~~N~- 484 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFR-------CLPPKVKVLDLHNNRIMSIPKD---------VTHLQALQELNVASNQ- 484 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGS-------SCCTTCSEEECCSSCCCCCCTT---------TTSSCCCSEEECCSSC-
T ss_pred hhhcCcccCCEEECCCCCCCcchhh-------hhcCcCCEEECCCCcCcccChh---------hcCCCCCCEEECCCCC-
Confidence 2333333 45666666666552221 23 7999999999999888654 5689999999999987
Q ss_pred cccceecccccccccccccccccccccccCcc
Q 037920 431 LEELIVVENQEERKNSIVIFPQLQYLKMDDLE 462 (505)
Q Consensus 431 l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 462 (505)
++.+ +... ...+++|+.|++++++
T Consensus 485 l~~l--~~~~------~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 485 LKSV--PDGV------FDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCC--CTTS------TTTCTTCCCEECCSCC
T ss_pred CCCC--CHHH------HhcCCCCCEEEecCCC
Confidence 7766 3321 3456999999999877
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=2.5e-24 Score=234.35 Aligned_cols=172 Identities=17% Similarity=0.143 Sum_probs=138.3
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCc-cC-cccccCCCCCCeeEee
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLM-SL-PSSLGLLSNLRTLSLD 153 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-~~~l~~l~~L~~L~L~ 153 (505)
+.++.+++.++.+|. -.+++++|++ +++.+..++...|.++++|++|++++|... .+ |..+.++++|++|+|+
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdL---s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLL---SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEE---ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEEC---CCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 467888899999998 6789999999 455566665555799999999999999544 45 6789999999999999
Q ss_pred ccCCCC--cccccCCCCCcEEEccCCCCcc-cchh--hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCC
Q 037920 154 NCKLLD--ITVVRDLKKLEILCLRGSNIKM-LPIE--VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFG 228 (505)
Q Consensus 154 ~~~l~~--~~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 228 (505)
+|.+.. |..++.+++|++|++++|+++. .|.. +.++++|++|++++|...+..+...++.+++|++|++++|.+.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999988 6899999999999999999885 4544 8999999999999965444334334899999999999999884
Q ss_pred CchhhhhccccccccCC--CCcCEEEeecccCC
Q 037920 229 KWEVEMEGVKNASLHEL--KHLTSLELHIKDVN 259 (505)
Q Consensus 229 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~ 259 (505)
. ..+..+..+ ++|+.|+++.|.+.
T Consensus 162 ~-------~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 162 L-------VCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp C-------CCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred e-------eCHHHcccccCCccceEECCCCccc
Confidence 3 334455555 67777777777665
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=2.4e-23 Score=219.95 Aligned_cols=141 Identities=21% Similarity=0.205 Sum_probs=120.8
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS 139 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 139 (505)
++..+|. ..+.++++|++++|.++.++.. .++++|++|++ +++.+..+++..|.++++|++|++++|.++.+|.
T Consensus 42 ~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~L---s~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 42 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL---SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC---TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEEC---CCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 5666664 4577899999999999988753 48999999999 6777888888888999999999999999999875
Q ss_pred -cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcc--cchhhhCCCCCCEEeeeCCCCCCccC
Q 037920 140 -SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKM--LPIEVSELARLRLLGLRDCRELEVIP 207 (505)
Q Consensus 140 -~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~ 207 (505)
.|.++++|++|++++|.+.. + ..++++++|++|++++|.++. .|..+..+++|++|++++| .+..++
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 189 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY 189 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEEC
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccc
Confidence 58999999999999999998 4 568999999999999999875 4778899999999999984 444443
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=4.5e-23 Score=208.17 Aligned_cols=303 Identities=19% Similarity=0.165 Sum_probs=214.8
Q ss_pred CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcE
Q 037920 92 VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEI 171 (505)
Q Consensus 92 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~ 171 (505)
..+++|++|++ .++.+..+|. +..+++|++|++++|.++.+| ++.+++|++|++++|.+.+++ ++.+++|++
T Consensus 39 ~~l~~L~~L~L---s~n~l~~~~~--l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDC---HNSSITDMTG--IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEEC---CSSCCCCCTT--GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCE
T ss_pred hHcCCCCEEEc---cCCCcccChh--hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCE
Confidence 37899999999 5556666763 689999999999999999986 899999999999999998853 889999999
Q ss_pred EEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEE
Q 037920 172 LCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSL 251 (505)
Q Consensus 172 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 251 (505)
|++++|+++.+| ++++++|++|++++ +.+..++ ++.+++|++|++++|.. .+.+ .+..+++|+.|
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n~~-------~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID---VSHNTQLTELDCHLNKK-------ITKL--DVTPQTQLTTL 175 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC---CTTCTTCCEEECTTCSC-------CCCC--CCTTCTTCCEE
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCC-Cccceec---cccCCcCCEEECCCCCc-------cccc--ccccCCcCCEE
Confidence 999999999886 88999999999999 4555564 68999999999999854 2333 47889999999
Q ss_pred EeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhh
Q 037920 252 ELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNEL 331 (505)
Q Consensus 252 ~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 331 (505)
++++|.+..+| ...+++|+.|.+..+.. ...+ + ..+++|+.|++++| .+..+| +
T Consensus 176 ~ls~n~l~~l~-l~~l~~L~~L~l~~N~l---------------~~~~----l-~~l~~L~~L~Ls~N---~l~~ip--~ 229 (457)
T 3bz5_A 176 DCSFNKITELD-VSQNKLLNRLNCDTNNI---------------TKLD----L-NQNIQLTFLDCSSN---KLTEID--V 229 (457)
T ss_dssp ECCSSCCCCCC-CTTCTTCCEEECCSSCC---------------SCCC----C-TTCTTCSEEECCSS---CCSCCC--C
T ss_pred ECCCCccceec-cccCCCCCEEECcCCcC---------------Ceec----c-ccCCCCCEEECcCC---cccccC--c
Confidence 99999999887 22388899888753211 1111 1 23789999999998 344455 4
Q ss_pred hccCCCCccEEEEeCCCCCC--ccccccccchhcchhhhhhhhcccccccccccccccccccccccc-ccccccccceee
Q 037920 332 AKVGPSQLKHLHIWNHPPNP--AESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSI-NVERIWQSHVAV 408 (505)
Q Consensus 332 ~~~~l~~L~~L~l~~~~~~~--~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~v 408 (505)
..+++|+.|++++|.-.. ...+++|+... -...+|+.|++++| .+..++
T Consensus 230 --~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~--------------------l~~n~L~~L~l~~n~~~~~~~------ 281 (457)
T 3bz5_A 230 --TPLTQLTYFDCSVNPLTELDVSTLSKLTTLH--------------------CIQTDLLEIDLTHNTQLIYFQ------ 281 (457)
T ss_dssp --TTCTTCSEEECCSSCCSCCCCTTCTTCCEEE--------------------CTTCCCSCCCCTTCTTCCEEE------
T ss_pred --cccCCCCEEEeeCCcCCCcCHHHCCCCCEEe--------------------ccCCCCCEEECCCCccCCccc------
Confidence 678999999999987211 11111111000 01234455555555 222221
Q ss_pred ccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccC-----CcccccCCCccce
Q 037920 409 MSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTG-----DVDILEFPSLKEL 483 (505)
Q Consensus 409 ~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~-----~~~~~~~~~L~~L 483 (505)
...+++|+.|++++|..++.+.. . +++|+.|++++|++|+.+.-. ...+..+++|+.|
T Consensus 282 -----~~~l~~L~~L~Ls~n~~l~~l~~--~----------~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L 344 (457)
T 3bz5_A 282 -----AEGCRKIKELDVTHNTQLYLLDC--Q----------AAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSL 344 (457)
T ss_dssp -----CTTCTTCCCCCCTTCTTCCEEEC--T----------TCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEE
T ss_pred -----ccccccCCEEECCCCcccceecc--C----------CCcceEechhhcccCCEEECCCCcccccccccCCcCcEE
Confidence 46689999999999998887732 1 244555555555554433210 0025567777777
Q ss_pred ecccC
Q 037920 484 IINRC 488 (505)
Q Consensus 484 ~i~~C 488 (505)
++++.
T Consensus 345 ~l~~N 349 (457)
T 3bz5_A 345 SCVNA 349 (457)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 77664
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1.1e-22 Score=205.15 Aligned_cols=277 Identities=19% Similarity=0.195 Sum_probs=160.8
Q ss_pred cCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeE
Q 037920 72 IKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLS 151 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~ 151 (505)
++++++|++++|.+..+|.. .++|+.|++ +++.+..++. ..++|++|++++|.++.+| .++.+++|++|+
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l---~~n~l~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLV---DNNNLKALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIID 159 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEEC---CSSCCSCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEEC---CCCccCcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEE
Confidence 46677777777777666643 467777777 4444444443 1257777777777777766 477777777777
Q ss_pred eeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCc
Q 037920 152 LDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKW 230 (505)
Q Consensus 152 L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 230 (505)
+++|.+.+ |.. ..+|++|++++|+++.+| .++++++|++|++++| .+..+|.. .++|++|++++|.+.
T Consensus 160 l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l~-- 228 (454)
T 1jl5_A 160 VDNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNILE-- 228 (454)
T ss_dssp CCSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCCS--
T ss_pred CCCCcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcCC--
Confidence 77777766 332 247777777777777766 5777777777777773 44445432 246777777777653
Q ss_pred hhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcc
Q 037920 231 EVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQG 310 (505)
Q Consensus 231 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 310 (505)
.+| .+..+++|+.|++++|.+..+|.. +++|+.|++..+.. ...+ ..+++
T Consensus 229 ------~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l-----------------~~l~----~~~~~ 278 (454)
T 1jl5_A 229 ------ELP-ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYL-----------------TDLP----ELPQS 278 (454)
T ss_dssp ------SCC-CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCC-----------------SCCC----CCCTT
T ss_pred ------ccc-ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcc-----------------cccC----cccCc
Confidence 233 266777777777777777766654 56777766542210 0011 11356
Q ss_pred eeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcccc-ccccchhcchhhhhhhhccccccccccccccccc
Q 037920 311 IEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESK-RREESTDVMQSHEIILKVNVNALFVEKVTLPKLE 389 (505)
Q Consensus 311 L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l-~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 389 (505)
|+.|++++| .+..++. ..++|++|++++|.-.....+ ++ ++.++++.+.+.+.. ..+++|+
T Consensus 279 L~~L~ls~N---~l~~l~~-----~~~~L~~L~l~~N~l~~i~~~~~~--L~~L~Ls~N~l~~lp--------~~~~~L~ 340 (454)
T 1jl5_A 279 LTFLDVSEN---IFSGLSE-----LPPNLYYLNASSNEIRSLCDLPPS--LEELNVSNNKLIELP--------ALPPRLE 340 (454)
T ss_dssp CCEEECCSS---CCSEESC-----CCTTCCEEECCSSCCSEECCCCTT--CCEEECCSSCCSCCC--------CCCTTCC
T ss_pred CCEEECcCC---ccCcccC-----cCCcCCEEECcCCcCCcccCCcCc--CCEEECCCCcccccc--------ccCCcCC
Confidence 777777776 2333321 125677777777652221111 11 223333333333210 1246666
Q ss_pred cccccccccccccccceeeccCccccccccccEEEEcccc
Q 037920 390 NLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR 429 (505)
Q Consensus 390 ~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~ 429 (505)
.|++++|+++.++. .+++|++|++++|.
T Consensus 341 ~L~L~~N~l~~lp~------------~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 341 RLIASFNHLAEVPE------------LPQNLKQLHVEYNP 368 (454)
T ss_dssp EEECCSSCCSCCCC------------CCTTCCEEECCSSC
T ss_pred EEECCCCccccccc------------hhhhccEEECCCCC
Confidence 66666666555421 24666667666665
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=7e-23 Score=200.40 Aligned_cols=278 Identities=20% Similarity=0.224 Sum_probs=204.5
Q ss_pred ccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCe
Q 037920 71 AIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRT 149 (505)
Q Consensus 71 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~ 149 (505)
.++.....+.+++.++.+|... .++|++|++ .++.+..++...|.++++|++|++++|.++.+ |..+..+++|++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~-~~~L~~L~l---~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGL-TEAVKSLDL---SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTC-CTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcccccccc-cccCcEEEC---CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3444455788888888888643 358999999 66667777776678999999999999999886 456889999999
Q ss_pred eEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccch--hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCC
Q 037920 150 LSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPI--EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225 (505)
Q Consensus 150 L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 225 (505)
|++++|.+.. + ..++.+++|++|++++|+++.+|. .+.++++|++|++++|..++.++...++.+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 9999999888 4 448899999999999999998876 68889999999999976677776555888999999999998
Q ss_pred CCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHH
Q 037920 226 SFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLI 305 (505)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 305 (505)
.+ .+..+..+..+++|+.|++++|.+..+|. .+.
T Consensus 185 ~l-------~~~~~~~l~~l~~L~~L~l~~n~l~~~~~---------------------------------------~~~ 218 (353)
T 2z80_A 185 DL-------QSYEPKSLKSIQNVSHLILHMKQHILLLE---------------------------------------IFV 218 (353)
T ss_dssp TC-------CEECTTTTTTCSEEEEEEEECSCSTTHHH---------------------------------------HHH
T ss_pred Cc-------CccCHHHHhccccCCeecCCCCccccchh---------------------------------------hhh
Confidence 87 44556778889999999998887654332 233
Q ss_pred HHhcceeEEeecCCCCCCcchhhhhhh-ccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccc
Q 037920 306 VQLQGIEDLGLSKLPEQDVDYFVNELA-KVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVT 384 (505)
Q Consensus 306 ~~~~~L~~L~l~~~~~~~~~~~~~~l~-~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~ 384 (505)
..+++|+.|++++| ......+..+. ......++.+++.++. +..+.+.. +......
T Consensus 219 ~~~~~L~~L~L~~n--~l~~~~~~~l~~~~~~~~l~~l~L~~~~----------------l~~~~l~~-----l~~~l~~ 275 (353)
T 2z80_A 219 DVTSSVECLELRDT--DLDTFHFSELSTGETNSLIKKFTFRNVK----------------ITDESLFQ-----VMKLLNQ 275 (353)
T ss_dssp HHTTTEEEEEEESC--BCTTCCCC------CCCCCCEEEEESCB----------------CCHHHHHH-----HHHHHHT
T ss_pred hhcccccEEECCCC--ccccccccccccccccchhhcccccccc----------------ccCcchhh-----hHHHHhc
Confidence 44788888888887 22211111110 1345677778777764 11111111 1112246
Q ss_pred ccccccccccccccccccccceeeccCccccccccccEEEEcccc
Q 037920 385 LPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR 429 (505)
Q Consensus 385 ~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~ 429 (505)
+++|+.|++++|+++.++.+. +..+++|++|++++|+
T Consensus 276 l~~L~~L~Ls~N~l~~i~~~~--------~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 276 ISGLLELEFSRNQLKSVPDGI--------FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSSC
T ss_pred ccCCCEEECCCCCCCccCHHH--------HhcCCCCCEEEeeCCC
Confidence 889999999999888776531 3678999999999887
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.2e-22 Score=196.25 Aligned_cols=176 Identities=24% Similarity=0.401 Sum_probs=135.6
Q ss_pred CCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeee
Q 037920 120 RMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLR 198 (505)
Q Consensus 120 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 198 (505)
....++.|+++++.++.+|..+..+++|++|++++|.+.. |..++.+++|++|++++|.++.+|..+.++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4578899999999998888888889999999999998888 778889999999999999888888889999999999999
Q ss_pred CCCCCCccChhhhc---------CCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCC
Q 037920 199 DCRELEVIPANVLS---------NLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPK 269 (505)
Q Consensus 199 ~~~~~~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~ 269 (505)
+|+..+.+|.. ++ .+++|++|++++|.+. .+|..+..+++|+.|++++|.+..+|..+
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l---- 225 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR--------SLPASIANLQNLKSLKIRNSPLSALGPAI---- 225 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC--------CCCGGGGGCTTCCEEEEESSCCCCCCGGG----
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC--------cchHhhcCCCCCCEEEccCCCCCcCchhh----
Confidence 88888888765 44 3777888888777663 34556777777777777777766555431
Q ss_pred CcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920 270 LQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 270 L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
..+++|+.|++++| .....+|..+ ..+++|++|++++|.
T Consensus 226 ------------------------------------~~l~~L~~L~Ls~n--~~~~~~p~~~--~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 226 ------------------------------------HHLPKLEELDLRGC--TALRNYPPIF--GGRAPLKRLILKDCS 264 (328)
T ss_dssp ------------------------------------GGCTTCCEEECTTC--TTCCBCCCCT--TCCCCCCEEECTTCT
T ss_pred ------------------------------------ccCCCCCEEECcCC--cchhhhHHHh--cCCCCCCEEECCCCC
Confidence 12567777777776 5555666666 567777777777765
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=2.4e-22 Score=194.12 Aligned_cols=220 Identities=20% Similarity=0.268 Sum_probs=187.9
Q ss_pred cCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCee
Q 037920 72 IKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTL 150 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L 150 (505)
..+++.|++++|.+..+|... .+++|++|++ .++.+..+|..+ ..+++|++|++++|.++.+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L---~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTI---DAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEE---ESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEEC---CCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 478999999999999888754 8999999999 445555888765 88999999999999999999999999999999
Q ss_pred EeeccCCCC--cccccC---------CCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccE
Q 037920 151 SLDNCKLLD--ITVVRD---------LKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEE 219 (505)
Q Consensus 151 ~L~~~~l~~--~~~i~~---------l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 219 (505)
++++|.+.+ |..++. +++|++|++++|+++.+|..++++++|++|++++ +.+..+|.. ++.+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCE
Confidence 999988555 565554 9999999999999999999999999999999999 556678876 899999999
Q ss_pred EEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC-CCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCc
Q 037920 220 LYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN-TLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKI 298 (505)
Q Consensus 220 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~ 298 (505)
|++++|.+ .+.+|..+..+++|+.|++++|.+. .+|..+
T Consensus 234 L~Ls~n~~-------~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~--------------------------------- 273 (328)
T 4fcg_A 234 LDLRGCTA-------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI--------------------------------- 273 (328)
T ss_dssp EECTTCTT-------CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG---------------------------------
T ss_pred EECcCCcc-------hhhhHHHhcCCCCCCEEECCCCCchhhcchhh---------------------------------
Confidence 99999887 5677888999999999999987653 455431
Q ss_pred cchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920 299 RLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 299 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
..+++|+.|++++| ...+.+|.++ ..+++|+.+.+..+.
T Consensus 274 -------~~l~~L~~L~L~~n--~~~~~iP~~l--~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 274 -------HRLTQLEKLDLRGC--VNLSRLPSLI--AQLPANCIILVPPHL 312 (328)
T ss_dssp -------GGCTTCCEEECTTC--TTCCCCCGGG--GGSCTTCEEECCGGG
T ss_pred -------hcCCCCCEEeCCCC--CchhhccHHH--hhccCceEEeCCHHH
Confidence 12788999999999 7888999998 789999999987653
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.2e-21 Score=189.69 Aligned_cols=294 Identities=15% Similarity=0.154 Sum_probs=193.2
Q ss_pred CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEe
Q 037920 74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSL 152 (505)
Q Consensus 74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L 152 (505)
+++.++++++.+..+|... .++++.|++ .++.+..++...|.++++|++|++++|.++.+ |..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L---~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDL---QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEEC---CSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEEC---CCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 6888999998888887643 378999999 66667777776678999999999999999886 778999999999999
Q ss_pred eccCCCC-cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCC-ccChhhhcCCCCccEEEeeCCCCCC
Q 037920 153 DNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELE-VIPANVLSNLSHLEELYIGYNSFGK 229 (505)
Q Consensus 153 ~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~ 229 (505)
++|.+.. +..+. ++|++|++++|.++.++. .+.++++|++|++++|.... ......+..+++|++|++++|.+..
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 9999888 55554 789999999999988754 57889999999999854321 1333337889999999999988754
Q ss_pred chhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhc
Q 037920 230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQ 309 (505)
Q Consensus 230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 309 (505)
. |..+. ++|+.|++++|.+..++... + ..++
T Consensus 186 l--------~~~~~--~~L~~L~l~~n~l~~~~~~~--------------------------------------~-~~l~ 216 (330)
T 1xku_A 186 I--------PQGLP--PSLTELHLDGNKITKVDAAS--------------------------------------L-KGLN 216 (330)
T ss_dssp C--------CSSCC--TTCSEEECTTSCCCEECTGG--------------------------------------G-TTCT
T ss_pred C--------Ccccc--ccCCEEECCCCcCCccCHHH--------------------------------------h-cCCC
Confidence 3 33332 78999999998876543221 0 1145
Q ss_pred ceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccc
Q 037920 310 GIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLE 389 (505)
Q Consensus 310 ~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 389 (505)
+|+.|++++| ......+..+ ..+++|++|++++|.-.. +......+++|+
T Consensus 217 ~L~~L~Ls~n--~l~~~~~~~~--~~l~~L~~L~L~~N~l~~--------------------------lp~~l~~l~~L~ 266 (330)
T 1xku_A 217 NLAKLGLSFN--SISAVDNGSL--ANTPHLRELHLNNNKLVK--------------------------VPGGLADHKYIQ 266 (330)
T ss_dssp TCCEEECCSS--CCCEECTTTG--GGSTTCCEEECCSSCCSS--------------------------CCTTTTTCSSCC
T ss_pred CCCEEECCCC--cCceeChhhc--cCCCCCCEEECCCCcCcc--------------------------CChhhccCCCcC
Confidence 6666666666 2222222234 456777777777765110 001122466777
Q ss_pred cccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCc
Q 037920 390 NLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDL 461 (505)
Q Consensus 390 ~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~ 461 (505)
+|++++|+++.++...+... ......+.|+.|++.+++ ++.+..... ....+++|+.++++++
T Consensus 267 ~L~l~~N~i~~~~~~~f~~~--~~~~~~~~l~~l~l~~N~-~~~~~i~~~------~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 267 VVYLHNNNISAIGSNDFCPP--GYNTKKASYSGVSLFSNP-VQYWEIQPS------TFRCVYVRAAVQLGNY 329 (330)
T ss_dssp EEECCSSCCCCCCTTSSSCS--SCCTTSCCCSEEECCSSS-SCGGGSCGG------GGTTCCCGGGEEC---
T ss_pred EEECCCCcCCccChhhcCCc--ccccccccccceEeecCc-ccccccCcc------ccccccceeEEEeccc
Confidence 77777776666644322000 002235677777777776 332211111 1234466666666554
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.1e-22 Score=195.20 Aligned_cols=220 Identities=17% Similarity=0.223 Sum_probs=133.2
Q ss_pred CCCcEEEecCCCCc---cCCCCC-CCCCccEEEeeecC-CCCccccChhHHhCCCCccEEEEeCCcCc-cCcccccCCCC
Q 037920 73 KLYTSIVLHDIRTN---LLPEVV-ESPQLKLLFICADQ-ESSSLTIPNKFFERMMQVRVINLTNINLM-SLPSSLGLLSN 146 (505)
Q Consensus 73 ~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~ 146 (505)
.++++|+++++.+. .+|... .+++|++|++ .+ +...+.+|.. |..+++|++|++++|.++ .+|..+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L--~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--GGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEE--EEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeC--CCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 45677777777664 344333 6666666666 32 3333345544 356666666666666666 36666666666
Q ss_pred CCeeEeeccCCCC--cccccCCCCCcEEEccCCCCc-ccchhhhCCC-CCCEEeeeCCCCCCccChhhhcCCCCccEEEe
Q 037920 147 LRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIK-MLPIEVSELA-RLRLLGLRDCRELEVIPANVLSNLSHLEELYI 222 (505)
Q Consensus 147 L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 222 (505)
|++|++++|.+.+ |..++.+++|++|++++|+++ .+|..+..++ +|++|++++|...+.+|.. ++.++ |++|++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~L 204 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDL 204 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEEC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEEC
Confidence 6666666666653 556666666666666666666 5566666665 6666666664333344444 55555 666666
Q ss_pred eCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchh
Q 037920 223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKD 302 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 302 (505)
++|.+ .+..+..+..+++|+.|++++|.+...+..+
T Consensus 205 s~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------------------- 240 (313)
T 1ogq_A 205 SRNML-------EGDASVLFGSDKNTQKIHLAKNSLAFDLGKV------------------------------------- 240 (313)
T ss_dssp CSSEE-------EECCGGGCCTTSCCSEEECCSSEECCBGGGC-------------------------------------
T ss_pred cCCcc-------cCcCCHHHhcCCCCCEEECCCCceeeecCcc-------------------------------------
Confidence 66655 3444556666666666666666554221110
Q ss_pred hHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920 303 GLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 303 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
..+++|+.|++++| .....+|.++ ..+++|++|++++|.
T Consensus 241 ---~~l~~L~~L~Ls~N--~l~~~~p~~l--~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 241 ---GLSKNLNGLDLRNN--RIYGTLPQGL--TQLKFLHSLNVSFNN 279 (313)
T ss_dssp ---CCCTTCCEEECCSS--CCEECCCGGG--GGCTTCCEEECCSSE
T ss_pred ---cccCCCCEEECcCC--cccCcCChHH--hcCcCCCEEECcCCc
Confidence 11567777777777 4444667666 667788888887775
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=4.8e-22 Score=192.75 Aligned_cols=293 Identities=16% Similarity=0.175 Sum_probs=198.1
Q ss_pred CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEe
Q 037920 74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSL 152 (505)
Q Consensus 74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L 152 (505)
+++.++++++.+..+|... .+++++|++ .++.+..++...|.++++|++|++++|.++.+ |..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l---~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDL---QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEEC---CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEEC---CCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5889999999998888654 478999999 56666777666678999999999999999985 678999999999999
Q ss_pred eccCCCC-cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCc--cChhhhcCCCCccEEEeeCCCCC
Q 037920 153 DNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEV--IPANVLSNLSHLEELYIGYNSFG 228 (505)
Q Consensus 153 ~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~ 228 (505)
++|.+.. +..+. ++|++|++++|.++.+|. .+.++++|++|++++|. +.. .....+..+ +|++|++++|.+.
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCC
Confidence 9999888 65555 899999999999998865 48899999999999954 332 333325666 8999999999875
Q ss_pred CchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHh
Q 037920 229 KWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQL 308 (505)
Q Consensus 229 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 308 (505)
.. |..+. ++|+.|++++|.+..++.... ..+
T Consensus 186 ~l--------~~~~~--~~L~~L~l~~n~i~~~~~~~l---------------------------------------~~l 216 (332)
T 2ft3_A 186 GI--------PKDLP--ETLNELHLDHNKIQAIELEDL---------------------------------------LRY 216 (332)
T ss_dssp SC--------CSSSC--SSCSCCBCCSSCCCCCCTTSS---------------------------------------TTC
T ss_pred cc--------Ccccc--CCCCEEECCCCcCCccCHHHh---------------------------------------cCC
Confidence 43 33333 689999999998877653211 014
Q ss_pred cceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccccc
Q 037920 309 QGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKL 388 (505)
Q Consensus 309 ~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L 388 (505)
++|+.|++++| ......+..+ ..+++|++|++++|.-. . +......+++|
T Consensus 217 ~~L~~L~L~~N--~l~~~~~~~~--~~l~~L~~L~L~~N~l~------~--------------------lp~~l~~l~~L 266 (332)
T 2ft3_A 217 SKLYRLGLGHN--QIRMIENGSL--SFLPTLRELHLDNNKLS------R--------------------VPAGLPDLKLL 266 (332)
T ss_dssp TTCSCCBCCSS--CCCCCCTTGG--GGCTTCCEEECCSSCCC------B--------------------CCTTGGGCTTC
T ss_pred CCCCEEECCCC--cCCcCChhHh--hCCCCCCEEECCCCcCe------e--------------------cChhhhcCccC
Confidence 56666777766 2222222344 55677777777776511 0 11112356777
Q ss_pred ccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920 389 ENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE 462 (505)
Q Consensus 389 ~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 462 (505)
+.|++++|+++.++...+ ..+......++|+.|++.+++ +........ ....+++|+.+++.++.
T Consensus 267 ~~L~l~~N~l~~~~~~~~--~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~------~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDF--CPVGFGVKRAYYNGISLFNNP-VPYWEVQPA------TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCSSCCCBCCTTSS--SCSSCCSSSCCBSEEECCSSS-SCGGGSCGG------GGTTBCCSTTEEC----
T ss_pred CEEECCCCCCCccChhHc--cccccccccccccceEeecCc-ccccccCcc------cccccchhhhhhccccc
Confidence 777777777776654322 011001225677888888877 332211111 13345777777776654
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=3.8e-21 Score=193.90 Aligned_cols=326 Identities=21% Similarity=0.215 Sum_probs=227.2
Q ss_pred CCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEe
Q 037920 73 KLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSL 152 (505)
Q Consensus 73 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L 152 (505)
.+++++++++|.+..+|.. .++|+.|++ +++.+..+|. .+.+|++|++++|.++.+|.. .++|++|++
T Consensus 71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l---~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L 138 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL--PPHLESLVA---SCNSLTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGV 138 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEEC---CSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEEC
T ss_pred cCCCEEEecCCccccCCCC--cCCCCEEEc---cCCcCCcccc----ccCCCcEEECCCCccCcccCC---CCCCCEEEC
Confidence 3579999999999888874 579999999 5566666775 358999999999999887642 279999999
Q ss_pred eccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchh
Q 037920 153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV 232 (505)
Q Consensus 153 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 232 (505)
++|.+.+++.++.+++|++|++++|+++.+|..+ .+|++|++++| .+..+|. ++.+++|++|++++|.+...
T Consensus 139 ~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l-- 210 (454)
T 1jl5_A 139 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKL-- 210 (454)
T ss_dssp CSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSC--
T ss_pred cCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcC--
Confidence 9999988447999999999999999999887543 58999999994 5666774 89999999999999987542
Q ss_pred hhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhccee
Q 037920 233 EMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIE 312 (505)
Q Consensus 233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~ 312 (505)
|.. .++|+.|++++|.+..+|....+++|+.|++..+.. ...+ ..+++|+
T Consensus 211 ------~~~---~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l-----------------~~l~----~~~~~L~ 260 (454)
T 1jl5_A 211 ------PDL---PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL-----------------KTLP----DLPPSLE 260 (454)
T ss_dssp ------CCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC-----------------SSCC----SCCTTCC
T ss_pred ------CCC---cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcC-----------------Cccc----ccccccC
Confidence 222 258999999999999888643488999988753211 0111 1257899
Q ss_pred EEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcccc-ccccchhcchhhhhhhhccccccccccccccccccc
Q 037920 313 DLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESK-RREESTDVMQSHEIILKVNVNALFVEKVTLPKLENL 391 (505)
Q Consensus 313 ~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l-~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 391 (505)
.|++++| .+..+|. .+++|++|++++|.-...+.+ .+ ++.+++..+.+.+.. ..+++|+.|
T Consensus 261 ~L~l~~N---~l~~l~~-----~~~~L~~L~ls~N~l~~l~~~~~~--L~~L~l~~N~l~~i~--------~~~~~L~~L 322 (454)
T 1jl5_A 261 ALNVRDN---YLTDLPE-----LPQSLTFLDVSENIFSGLSELPPN--LYYLNASSNEIRSLC--------DLPPSLEEL 322 (454)
T ss_dssp EEECCSS---CCSCCCC-----CCTTCCEEECCSSCCSEESCCCTT--CCEEECCSSCCSEEC--------CCCTTCCEE
T ss_pred EEECCCC---cccccCc-----ccCcCCEEECcCCccCcccCcCCc--CCEEECcCCcCCccc--------CCcCcCCEE
Confidence 9999998 3444553 348999999999973222111 12 334555455444411 123589999
Q ss_pred cccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCcccccccccCC
Q 037920 392 ELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGD 471 (505)
Q Consensus 392 ~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 471 (505)
++++|++..++. .+++|++|++++|. ++.+ +. .+++|++|++++++ +..++..|
T Consensus 323 ~Ls~N~l~~lp~------------~~~~L~~L~L~~N~-l~~l--p~----------~l~~L~~L~L~~N~-l~~l~~ip 376 (454)
T 1jl5_A 323 NVSNNKLIELPA------------LPPRLERLIASFNH-LAEV--PE----------LPQNLKQLHVEYNP-LREFPDIP 376 (454)
T ss_dssp ECCSSCCSCCCC------------CCTTCCEEECCSSC-CSCC--CC----------CCTTCCEEECCSSC-CSSCCCCC
T ss_pred ECCCCccccccc------------cCCcCCEEECCCCc-cccc--cc----------hhhhccEEECCCCC-CCcCCCCh
Confidence 999998877632 36899999999986 6665 22 24899999999886 44443334
Q ss_pred cccccC-------------CCccceecccCcccee
Q 037920 472 VDILEF-------------PSLKELIINRCPEFLM 493 (505)
Q Consensus 472 ~~~~~~-------------~~L~~L~i~~C~~L~~ 493 (505)
..+..+ ++|+.|++++++ ++.
T Consensus 377 ~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~ 410 (454)
T 1jl5_A 377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LRE 410 (454)
T ss_dssp TTCCEEECCC-------------------------
T ss_pred HHHHhhhhcccccccccccCcCCEEECCCCc-CCc
Confidence 445555 889999999985 443
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.6e-21 Score=206.02 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=125.5
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEeec
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDN 154 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~ 154 (505)
++++-++.+++.+|... .+++++|++ +++.+..+++..|.++++|++|++++|.++.+|+ .|.++++|++|+|++
T Consensus 34 ~~~~c~~~~l~~vP~~l-p~~~~~LdL---s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNL-PFSTKNLDL---SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp TEEECTTSCCSSCCSSS-CTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCCcCccCCCC-CcCCCEEEe---eCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence 45565666677887643 258999999 7777888888778999999999999999999765 689999999999999
Q ss_pred cCCCC-c-ccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCc--cChhhhcCCCCccEEEeeCCCCCC
Q 037920 155 CKLLD-I-TVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEV--IPANVLSNLSHLEELYIGYNSFGK 229 (505)
Q Consensus 155 ~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~ 229 (505)
|.+.. + ..++.+++|++|++++|+++.+|. .++++++|++|++++|. +.. .|.. ++.+++|++|++++|.+..
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccc
Confidence 99998 4 678999999999999999999875 58999999999999954 443 4554 7899999999999998865
Q ss_pred c
Q 037920 230 W 230 (505)
Q Consensus 230 ~ 230 (505)
.
T Consensus 188 ~ 188 (635)
T 4g8a_A 188 I 188 (635)
T ss_dssp E
T ss_pred c
Confidence 4
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.6e-22 Score=194.12 Aligned_cols=153 Identities=18% Similarity=0.266 Sum_probs=100.5
Q ss_pred CCccEEEeeecCCCCcc--ccChhHHhCCCCccEEEEeC-CcCcc-CcccccCCCCCCeeEeeccCCCC--cccccCCCC
Q 037920 95 PQLKLLFICADQESSSL--TIPNKFFERMMQVRVINLTN-INLMS-LPSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKK 168 (505)
Q Consensus 95 ~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~~-l~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~ 168 (505)
.+++.|++ .++...+ .+|.. +.++++|++|++++ +.+.. +|..+..+++|++|++++|.+.+ |..++.+++
T Consensus 50 ~~l~~L~L--~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDL--SGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEE--ECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEEC--CCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 46777777 3444433 45554 36777777777774 66653 67777777777777777777764 566777777
Q ss_pred CcEEEccCCCCc-ccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCC-CccEEEeeCCCCCCchhhhhccccccccCCC
Q 037920 169 LEILCLRGSNIK-MLPIEVSELARLRLLGLRDCRELEVIPANVLSNLS-HLEELYIGYNSFGKWEVEMEGVKNASLHELK 246 (505)
Q Consensus 169 L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 246 (505)
|++|++++|.++ .+|..+..+++|++|++++|...+.+|.. ++.++ +|++|++++|.+ .+..|..+..++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l-------~~~~~~~~~~l~ 198 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL-------TGKIPPTFANLN 198 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE-------EEECCGGGGGCC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCee-------eccCChHHhCCc
Confidence 777777777766 55667777777777777774433356655 56666 677777776665 445555566555
Q ss_pred CcCEEEeecccCC
Q 037920 247 HLTSLELHIKDVN 259 (505)
Q Consensus 247 ~L~~L~l~~~~~~ 259 (505)
|+.|++++|.+.
T Consensus 199 -L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 199 -LAFVDLSRNMLE 210 (313)
T ss_dssp -CSEEECCSSEEE
T ss_pred -ccEEECcCCccc
Confidence 666666665543
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=3.5e-20 Score=192.65 Aligned_cols=256 Identities=19% Similarity=0.195 Sum_probs=196.4
Q ss_pred CCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEe
Q 037920 73 KLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSL 152 (505)
Q Consensus 73 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L 152 (505)
.+++.++++++.+..+|.... ++|+.|++ .++.+..+|. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L---~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVI---PDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEE---CSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEe---cCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 358899999999998887544 89999999 5666667776 57899999999999998887 7799999999
Q ss_pred eccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchh
Q 037920 153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV 232 (505)
Q Consensus 153 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 232 (505)
++|.+..++. .+.+|+.|++++|+++.+|.. +++|++|++++| .+..+|. .+++|+.|++++|.+..
T Consensus 109 s~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~--- 175 (622)
T 3g06_A 109 FSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTS--- 175 (622)
T ss_dssp CSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC---
T ss_pred cCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCC---
Confidence 9999888333 678999999999999988864 488999999984 5666654 35789999999988743
Q ss_pred hhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhccee
Q 037920 233 EMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIE 312 (505)
Q Consensus 233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~ 312 (505)
+| ..+++|+.|++++|.+..+|.. +++|+.|.+..+. ....+ ..+++|+
T Consensus 176 -----l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~-----------------l~~l~----~~~~~L~ 224 (622)
T 3g06_A 176 -----LP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNR-----------------LTSLP----ALPSGLK 224 (622)
T ss_dssp -----CC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSC-----------------CSSCC----CCCTTCC
T ss_pred -----Cc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCc-----------------ccccC----CCCCCCC
Confidence 23 4468899999999999888865 6788887764221 00111 1257899
Q ss_pred EEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccccccccccccc
Q 037920 313 DLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLE 392 (505)
Q Consensus 313 ~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 392 (505)
.|++++| .++.+| ..+++|+.|++++|.-. . ++. .+++|+.|+
T Consensus 225 ~L~Ls~N---~L~~lp-----~~l~~L~~L~Ls~N~L~------~---------------------lp~--~~~~L~~L~ 267 (622)
T 3g06_A 225 ELIVSGN---RLTSLP-----VLPSELKELMVSGNRLT------S---------------------LPM--LPSGLLSLS 267 (622)
T ss_dssp EEECCSS---CCSCCC-----CCCTTCCEEECCSSCCS------C---------------------CCC--CCTTCCEEE
T ss_pred EEEccCC---ccCcCC-----CCCCcCcEEECCCCCCC------c---------------------CCc--ccccCcEEe
Confidence 9999987 444555 34688999999998611 1 111 478899999
Q ss_pred ccccccccccccceeeccCccccccccccEEEEcccc
Q 037920 393 LDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR 429 (505)
Q Consensus 393 l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~ 429 (505)
+++|+++.++.. +..+++|+.|++++|+
T Consensus 268 Ls~N~L~~lp~~---------l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 268 VYRNQLTRLPES---------LIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSSCCCSCCGG---------GGGSCTTCEEECCSCC
T ss_pred CCCCCCCcCCHH---------HhhccccCEEEecCCC
Confidence 999988877543 7889999999999998
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=3.8e-21 Score=184.17 Aligned_cols=175 Identities=22% Similarity=0.253 Sum_probs=106.6
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC---cccccCCCCCCeeEe
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL---PSSLGLLSNLRTLSL 152 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---~~~l~~l~~L~~L~L 152 (505)
+.++.+++.++.+|... .++++.|++ .++.+..++..+|.++++|++|++++|.++.+ +..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L---~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLEL---ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEEC---CSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEEC---CCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 35666666666666432 356777777 44455566666566677777777777766643 445556677777777
Q ss_pred eccCCCC-cccccCCCCCcEEEccCCCCcccch--hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920 153 DNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPI--EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK 229 (505)
Q Consensus 153 ~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 229 (505)
++|.+.. +..+..+++|++|++++|+++.++. .+..+++|++|++++|. +...+...+..+++|++|++++|.+..
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc
Confidence 7776666 5556667777777777776665543 56666777777776633 333333335666677777776665521
Q ss_pred chhhhhccccccccCCCCcCEEEeecccCCCC
Q 037920 230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTL 261 (505)
Q Consensus 230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 261 (505)
...|..+..+++|+.|++++|.+..+
T Consensus 165 ------~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 165 ------NFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp ------GEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ------ccchhHHhhCcCCCEEECCCCCcCCc
Confidence 13455566666666666666665543
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=6e-21 Score=186.64 Aligned_cols=257 Identities=17% Similarity=0.205 Sum_probs=195.8
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS 139 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 139 (505)
+++.++. ...+++++|++++|.+..++. ...+++|++|++ .++.+..++...|.++++|++|++++|.++.+|.
T Consensus 42 ~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 42 SLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVL---TSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp TCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred Ccccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEEC---CCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 4555554 455799999999999988876 449999999999 5666677766667899999999999999999887
Q ss_pred c-ccCCCCCCeeEeeccCCCC-cc--cccCCCCCcEEEccCC-CCccc-chhhhCCCCCCEEeeeCCCCCCcc-Chhhhc
Q 037920 140 S-LGLLSNLRTLSLDNCKLLD-IT--VVRDLKKLEILCLRGS-NIKML-PIEVSELARLRLLGLRDCRELEVI-PANVLS 212 (505)
Q Consensus 140 ~-l~~l~~L~~L~L~~~~l~~-~~--~i~~l~~L~~L~l~~~-~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~-~~~~~~ 212 (505)
. +..+++|++|++++|.+.. +. .++.+++|++|++++| .++.+ +..+.++++|++|++++|. +..+ |.. ++
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-l~ 195 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS-LK 195 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT-TT
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH-Hh
Confidence 6 8999999999999999988 44 6889999999999998 57777 4678999999999999954 4454 544 89
Q ss_pred CCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCC-----CCCCCcEEEEEEcceeeccccc
Q 037920 213 NLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGL-----FFPKLQRYKIHIGGYYYAGVWR 287 (505)
Q Consensus 213 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-----~~~~L~~L~~~~~~~~~~~~~~ 287 (505)
.+++|++|++++|.+...+. ..+..+++|+.|++++|.+..++... ....++.+++....
T Consensus 196 ~l~~L~~L~l~~n~l~~~~~-------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-------- 260 (353)
T 2z80_A 196 SIQNVSHLILHMKQHILLLE-------IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-------- 260 (353)
T ss_dssp TCSEEEEEEEECSCSTTHHH-------HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB--------
T ss_pred ccccCCeecCCCCccccchh-------hhhhhcccccEEECCCCccccccccccccccccchhhcccccccc--------
Confidence 99999999999998754432 23456899999999999987654321 14556666654211
Q ss_pred ceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920 288 RELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 288 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
+.+......+.++ ..+++|+.|++++| .++.+|..+. ..+++|++|++++|+
T Consensus 261 ----l~~~~l~~l~~~l-~~l~~L~~L~Ls~N---~l~~i~~~~~-~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 261 ----ITDESLFQVMKLL-NQISGLLELEFSRN---QLKSVPDGIF-DRLTSLQKIWLHTNP 312 (353)
T ss_dssp ----CCHHHHHHHHHHH-HTCTTCCEEECCSS---CCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred ----ccCcchhhhHHHH-hcccCCCEEECCCC---CCCccCHHHH-hcCCCCCEEEeeCCC
Confidence 0001111122233 33789999999998 5557776642 678999999999987
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=2.9e-23 Score=210.78 Aligned_cols=342 Identities=15% Similarity=0.101 Sum_probs=192.1
Q ss_pred cccCCCcEEEecCCCCc-----cCCCC-CCCCCccEEEeeecCCCCccccChhHHhCCC----CccEEEEeCCcCcc---
Q 037920 70 SAIKLYTSIVLHDIRTN-----LLPEV-VESPQLKLLFICADQESSSLTIPNKFFERMM----QVRVINLTNINLMS--- 136 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~-----~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~--- 136 (505)
..++++++|++++|.+. .++.. ..+++|++|++ +++......+..++..++ +|++|++++|.++.
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L--s~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL--RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEEC--TTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeC--CCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 34677888888888874 23332 26788888888 333332223344455565 68888888888773
Q ss_pred --CcccccCCCCCCeeEeeccCCCC--ccccc-----CCCCCcEEEccCCCCcc-----cchhhhCCCCCCEEeeeCCCC
Q 037920 137 --LPSSLGLLSNLRTLSLDNCKLLD--ITVVR-----DLKKLEILCLRGSNIKM-----LPIEVSELARLRLLGLRDCRE 202 (505)
Q Consensus 137 --l~~~l~~l~~L~~L~L~~~~l~~--~~~i~-----~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~ 202 (505)
++..+..+++|++|++++|.+.. +..+. ..++|++|++++|+++. ++..+..+++|++|++++|.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~- 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND- 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-
Confidence 56777888888888888888765 33222 35678888888887763 35566777888888888754
Q ss_pred CCccChhhhc-----CCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCC-----CCCC--CCCCC
Q 037920 203 LEVIPANVLS-----NLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTL-----PRGL--FFPKL 270 (505)
Q Consensus 203 ~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-----~~~~--~~~~L 270 (505)
+.......+. ..++|++|++++|.+..... ..++..+..+++|+.|++++|.+... +... .+++|
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~---~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC---RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH---HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH---HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 3332211121 35688888888887754321 23455667778888888888776431 1111 15566
Q ss_pred cEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhh---ccCCCCccEEEEeCC
Q 037920 271 QRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELA---KVGPSQLKHLHIWNH 347 (505)
Q Consensus 271 ~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~---~~~l~~L~~L~l~~~ 347 (505)
+.|++..+.... .+....+..+ ..+++|+.|++++| ......+..+. ....++|++|++++|
T Consensus 259 ~~L~L~~n~l~~------------~~~~~l~~~l-~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 259 RTLWIWECGITA------------KGCGDLCRVL-RAKESLKELSLAGN--ELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp CEEECTTSCCCH------------HHHHHHHHHH-HHCTTCCEEECTTC--CCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred eEEECcCCCCCH------------HHHHHHHHHH-hhCCCcceEECCCC--CCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 666653211000 0000011122 22567777777776 22222222221 123357777777776
Q ss_pred CCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCcccc-ccccccEEEEc
Q 037920 348 PPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNN-TFVRLQRIEIK 426 (505)
Q Consensus 348 ~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~-~l~~L~~L~l~ 426 (505)
. +.+.....+......+++|++|++++|++.+.....+ ... +. ..++|++|+++
T Consensus 324 ~---------------------l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l--~~~--l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 324 S---------------------FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL--CQG--LGQPGSVLRVLWLA 378 (461)
T ss_dssp C---------------------CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH--HHH--HTSTTCCCCEEECT
T ss_pred C---------------------CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH--HHH--HcCCCCceEEEECC
Confidence 5 1111111111222346788888888887665422110 000 11 15688888888
Q ss_pred cccccccceecccccccccccccccccccccccCcc
Q 037920 427 NCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE 462 (505)
Q Consensus 427 ~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 462 (505)
+|. ++.. +...+......+++|++|++++++
T Consensus 379 ~n~-i~~~----~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 379 DCD-VSDS----SCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TSC-CCHH----HHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCC-CChh----hHHHHHHHHHhCCCccEEECCCCC
Confidence 885 5421 111111123456888888888875
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=4.6e-21 Score=181.61 Aligned_cols=205 Identities=23% Similarity=0.362 Sum_probs=148.4
Q ss_pred CCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCc-CccC-c
Q 037920 63 YREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNIN-LMSL-P 138 (505)
Q Consensus 63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-~ 138 (505)
++.++. ...+++++|++++|.+..++. ...+++|++|++ .++.+..++...|..+++|++|++++|. +..+ |
T Consensus 23 l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 23 LQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWL---HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEEC---CSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred cccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEEC---CCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 444432 356788888888888877664 337888888888 5555556654456788888888888886 7765 5
Q ss_pred ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCC
Q 037920 139 SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLS 215 (505)
Q Consensus 139 ~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 215 (505)
..+..+++|++|++++|.+.. +..+..+++|++|++++|+++.++. .+.++++|++|++++ +.+..++...+..++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLH 177 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCcc
Confidence 677888888888888888777 4667788888888888888887764 377788888888888 456666665577788
Q ss_pred CccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC-CC-CCCCcEEEEEEcc
Q 037920 216 HLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG-LF-FPKLQRYKIHIGG 279 (505)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~~-~~~L~~L~~~~~~ 279 (505)
+|++|++++|.+ .+..+..+..+++|+.|++++|.+..++.. +. +++|+.|++..+.
T Consensus 178 ~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 178 SLDRLLLHQNRV-------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSSCC-------CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccCEEECCCCcc-------cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 888888888877 344456778888888888888887766643 22 5666666654433
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=5.5e-20 Score=191.23 Aligned_cols=256 Identities=20% Similarity=0.174 Sum_probs=180.1
Q ss_pred CCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEc
Q 037920 95 PQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCL 174 (505)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l 174 (505)
.++++|++ .++.+..+|..++ ++|++|++++|.++.+|. .+++|++|++++|.++.++. .+++|++|++
T Consensus 40 ~~l~~L~l---s~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNV---GESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSI 108 (622)
T ss_dssp HCCCEEEC---CSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEE
T ss_pred CCCcEEEe---cCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEEC
Confidence 46889999 6666778887653 789999999999998887 57899999999999888333 7789999999
Q ss_pred cCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEee
Q 037920 175 RGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH 254 (505)
Q Consensus 175 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 254 (505)
++|+++.+|. .+++|+.|++++ +.+..+|.. +++|++|++++|.+..+ |. ..++|+.|+++
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~-N~l~~lp~~----l~~L~~L~Ls~N~l~~l--------~~---~~~~L~~L~L~ 169 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFG-NQLTSLPVL----PPGLQELSVSDNQLASL--------PA---LPSELCKLWAY 169 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCS-SCCSCCCCC----CTTCCEEECCSSCCSCC--------CC---CCTTCCEEECC
T ss_pred cCCcCCCCCC---CCCCcCEEECCC-CCCCcCCCC----CCCCCEEECcCCcCCCc--------CC---ccCCCCEEECC
Confidence 9999998876 678899999988 556677753 48899999999887432 22 34678999999
Q ss_pred cccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhcc
Q 037920 255 IKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKV 334 (505)
Q Consensus 255 ~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 334 (505)
+|.+..+|.. +++|+.|+++.+.. . ..+ ..+++|+.|++.+| .+..+|.
T Consensus 170 ~N~l~~l~~~--~~~L~~L~Ls~N~l---------------~--~l~----~~~~~L~~L~L~~N---~l~~l~~----- 218 (622)
T 3g06_A 170 NNQLTSLPML--PSGLQELSVSDNQL---------------A--SLP----TLPSELYKLWAYNN---RLTSLPA----- 218 (622)
T ss_dssp SSCCSCCCCC--CTTCCEEECCSSCC---------------S--CCC----CCCTTCCEEECCSS---CCSSCCC-----
T ss_pred CCCCCCCccc--CCCCcEEECCCCCC---------------C--CCC----CccchhhEEECcCC---cccccCC-----
Confidence 9998888833 67777777642110 0 011 12467777777776 3444442
Q ss_pred CCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCccc
Q 037920 335 GPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSN 414 (505)
Q Consensus 335 ~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l 414 (505)
.+++|++|++++|.- .+ ++ ..+++|+.|++++|+++.++.
T Consensus 219 ~~~~L~~L~Ls~N~L---------------------~~------lp--~~l~~L~~L~Ls~N~L~~lp~----------- 258 (622)
T 3g06_A 219 LPSGLKELIVSGNRL---------------------TS------LP--VLPSELKELMVSGNRLTSLPM----------- 258 (622)
T ss_dssp CCTTCCEEECCSSCC---------------------SC------CC--CCCTTCCEEECCSSCCSCCCC-----------
T ss_pred CCCCCCEEEccCCcc---------------------Cc------CC--CCCCcCcEEECCCCCCCcCCc-----------
Confidence 346777777777651 11 01 246778888888887776632
Q ss_pred cccccccEEEEccccccccceecccccccccccccccccccccccCcc
Q 037920 415 NTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLE 462 (505)
Q Consensus 415 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 462 (505)
.+++|++|++++|. ++.+ +... ..+++|+.|++++++
T Consensus 259 -~~~~L~~L~Ls~N~-L~~l--p~~l-------~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQ-LTRL--PESL-------IHLSSETTVNLEGNP 295 (622)
T ss_dssp -CCTTCCEEECCSSC-CCSC--CGGG-------GGSCTTCEEECCSCC
T ss_pred -ccccCcEEeCCCCC-CCcC--CHHH-------hhccccCEEEecCCC
Confidence 45778888888775 6555 3322 345778888887776
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=3e-20 Score=187.98 Aligned_cols=241 Identities=20% Similarity=0.277 Sum_probs=165.9
Q ss_pred CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEe
Q 037920 74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSL 152 (505)
Q Consensus 74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L 152 (505)
..+.++.++..+..+|... .++++.|++ .++.+..++...|.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L---~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNL---MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEEC---CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEEC---cCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 4567888888787777533 368888888 555666666555788888888888888888754 57888888888888
Q ss_pred eccCCCC-c-ccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920 153 DNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK 229 (505)
Q Consensus 153 ~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 229 (505)
++|.+.. + ..+..+++|++|++++|+++.+|. .+.++++|+.|++++|+.++.++...+..+++|++|++++|.+..
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 8888887 4 557788888888888888887764 577888888888888888888887667888888888888887754
Q ss_pred chhhhhccccccccCCCCcCEEEeecccCCCCCCC-CC-CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHH
Q 037920 230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG-LF-FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQ 307 (505)
Q Consensus 230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~~-~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 307 (505)
. | .+..+++|+.|++++|.+..++.. +. +++|+.|.+..+.. ..........
T Consensus 211 ~--------~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-----------------~~~~~~~~~~ 264 (452)
T 3zyi_A 211 M--------P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-----------------SLIERNAFDG 264 (452)
T ss_dssp C--------C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC-----------------CEECTTTTTT
T ss_pred c--------c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC-----------------ceECHHHhcC
Confidence 3 2 377788888888888887765432 22 55555555431110 0000011112
Q ss_pred hcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920 308 LQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 308 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
+++|+.|++++| .+..++.... ..+++|+.|++++|+
T Consensus 265 l~~L~~L~L~~N---~l~~~~~~~~-~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 265 LASLVELNLAHN---NLSSLPHDLF-TPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECCSS---CCSCCCTTSS-TTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCC---cCCccChHHh-ccccCCCEEEccCCC
Confidence 566677777666 3333333221 456666777766665
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=4.1e-20 Score=175.02 Aligned_cols=216 Identities=20% Similarity=0.279 Sum_probs=174.8
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeec
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDN 154 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~ 154 (505)
+.++.+++.+..+|.. ..++|+.|++ .++.+..++...|..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l---~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFL---HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEEC---TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEe---eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 6788888888888753 4579999999 66777778777679999999999999999986 67899999999999999
Q ss_pred cC-CCC--cccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCc
Q 037920 155 CK-LLD--ITVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKW 230 (505)
Q Consensus 155 ~~-l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 230 (505)
|. +.. +..+..+++|++|++++|+++.+ |..+.++++|++|++++ +.+..++...++.+++|++|++++|.+...
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCccccc
Confidence 97 777 57889999999999999999887 56688999999999999 556677766578999999999999987432
Q ss_pred hhhhhccccccccCCCCcCEEEeecccCCCC-CCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhc
Q 037920 231 EVEMEGVKNASLHELKHLTSLELHIKDVNTL-PRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQ 309 (505)
Q Consensus 231 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 309 (505)
.+..+..+++|+.|++++|.+..+ |..+ ..++
T Consensus 169 -------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------------------------------~~l~ 201 (285)
T 1ozn_A 169 -------PERAFRGLHSLDRLLLHQNRVAHVHPHAF----------------------------------------RDLG 201 (285)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCCCEECTTTT----------------------------------------TTCT
T ss_pred -------CHHHhcCccccCEEECCCCcccccCHhHc----------------------------------------cCcc
Confidence 335688899999999999988754 3221 1157
Q ss_pred ceeEEeecCCCCCCcchhh-hhhhccCCCCccEEEEeCCC
Q 037920 310 GIEDLGLSKLPEQDVDYFV-NELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 310 ~L~~L~l~~~~~~~~~~~~-~~l~~~~l~~L~~L~l~~~~ 348 (505)
+|+.|++++| .+..++ ..+ ..+++|++|++++|+
T Consensus 202 ~L~~L~l~~n---~l~~~~~~~~--~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 202 RLMTLYLFAN---NLSALPTEAL--APLRALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSS---CCSCCCHHHH--TTCTTCCEEECCSSC
T ss_pred cccEeeCCCC---cCCcCCHHHc--ccCcccCEEeccCCC
Confidence 7888888887 333344 335 678889999988887
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=3.3e-20 Score=186.95 Aligned_cols=241 Identities=20% Similarity=0.314 Sum_probs=166.7
Q ss_pred CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEe
Q 037920 74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSL 152 (505)
Q Consensus 74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L 152 (505)
..+.++..+..+..+|... .++++.|++ .++.+..++...|.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L---~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI-STNTRLLNL---HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC-CTTCSEEEC---CSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCCCCC-CCCCcEEEc---cCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 3566777777777777543 367788888 555566666555677888888888888877754 56777888888888
Q ss_pred eccCCCC-c-ccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCC
Q 037920 153 DNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGK 229 (505)
Q Consensus 153 ~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 229 (505)
++|.+.. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..++...+..+++|++|++++|.+..
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 8887777 3 457778888888888887777754 567778888888887777777776657778888888888877653
Q ss_pred chhhhhccccccccCCCCcCEEEeecccCCCCCC-CCC-CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHH
Q 037920 230 WEVEMEGVKNASLHELKHLTSLELHIKDVNTLPR-GLF-FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQ 307 (505)
Q Consensus 230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~~~-~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 307 (505)
+ | .+..+++|+.|++++|.+..++. .+. +++|+.|.+..+.. ..........
T Consensus 200 ~--------~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-----------------~~~~~~~~~~ 253 (440)
T 3zyj_A 200 I--------P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-----------------QVIERNAFDN 253 (440)
T ss_dssp C--------C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-----------------CEECTTSSTT
T ss_pred c--------c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce-----------------eEEChhhhcC
Confidence 3 2 36777788888888887775533 332 67777776532210 0111111123
Q ss_pred hcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920 308 LQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 308 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
+++|+.|+|++| .++.++.... ..+++|+.|++++|+
T Consensus 254 l~~L~~L~L~~N---~l~~~~~~~~-~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 254 LQSLVEINLAHN---NLTLLPHDLF-TPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECTTS---CCCCCCTTTT-SSCTTCCEEECCSSC
T ss_pred CCCCCEEECCCC---CCCccChhHh-ccccCCCEEEcCCCC
Confidence 789999999998 4445554332 678999999999987
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=9.7e-22 Score=189.19 Aligned_cols=285 Identities=14% Similarity=0.142 Sum_probs=192.2
Q ss_pred CCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccch
Q 037920 106 QESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPI 184 (505)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~ 184 (505)
........+..++..+++|++|++++|.++.++ ..+..+++|++|++++|.+.+...++.+++|++|++++|+++.++
T Consensus 18 s~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~- 96 (317)
T 3o53_A 18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL- 96 (317)
T ss_dssp CTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE-
T ss_pred cccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc-
Confidence 444455556666777888888998888888865 578888889999998888877333888888999999888887665
Q ss_pred hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC
Q 037920 185 EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG 264 (505)
Q Consensus 185 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 264 (505)
..++|++|++++ +.+..++. ..+++|++|++++|.+... .+..+..+++|+.|++++|.+..++..
T Consensus 97 ---~~~~L~~L~l~~-n~l~~~~~---~~~~~L~~L~l~~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 97 ---VGPSIETLHAAN-NNISRVSC---SRGQGKKNIYLANNKITML-------RDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp ---ECTTCCEEECCS-SCCSEEEE---CCCSSCEEEECCSSCCCSG-------GGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred ---CCCCcCEEECCC-CccCCcCc---cccCCCCEEECCCCCCCCc-------cchhhhccCCCCEEECCCCCCCcccHH
Confidence 337888888888 45555553 3477888999888887443 345677788888888888876543221
Q ss_pred CCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEE
Q 037920 265 LFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHI 344 (505)
Q Consensus 265 ~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l 344 (505)
.+...+++|+.|++++| .+..++.. ..+++|++|++
T Consensus 163 --------------------------------------~~~~~l~~L~~L~L~~N---~l~~~~~~---~~l~~L~~L~L 198 (317)
T 3o53_A 163 --------------------------------------ELAASSDTLEHLNLQYN---FIYDVKGQ---VVFAKLKTLDL 198 (317)
T ss_dssp --------------------------------------GGGGGTTTCCEEECTTS---CCCEEECC---CCCTTCCEEEC
T ss_pred --------------------------------------HHhhccCcCCEEECCCC---cCcccccc---cccccCCEEEC
Confidence 11122577888888887 34444432 24788889988
Q ss_pred eCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEE
Q 037920 345 WNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIE 424 (505)
Q Consensus 345 ~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~ 424 (505)
++|.-. + +......+++|+.|++++|+++.++.. +..+++|++|+
T Consensus 199 s~N~l~---------------------~-----l~~~~~~l~~L~~L~L~~N~l~~l~~~---------~~~l~~L~~L~ 243 (317)
T 3o53_A 199 SSNKLA---------------------F-----MGPEFQSAAGVTWISLRNNKLVLIEKA---------LRFSQNLEHFD 243 (317)
T ss_dssp CSSCCC---------------------E-----ECGGGGGGTTCSEEECTTSCCCEECTT---------CCCCTTCCEEE
T ss_pred CCCcCC---------------------c-----chhhhcccCcccEEECcCCcccchhhH---------hhcCCCCCEEE
Confidence 888611 1 111123578899999999988776543 67789999999
Q ss_pred EccccccccceecccccccccccccccccccccccCcccccccccCCcccccCCCccceecccCccceeee
Q 037920 425 IKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNFCTGDVDILEFPSLKELIINRCPEFLMRY 495 (505)
Q Consensus 425 l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~~~ 495 (505)
+++|+-.... .+. ....+++|+.+++.+++.++.... .....+.+....-..|..+..-|
T Consensus 244 l~~N~~~~~~-~~~-------~~~~~~~L~~l~l~~~~~l~~~~~---~~~~~~~~~~~~~~cc~~l~~~~ 303 (317)
T 3o53_A 244 LRGNGFHCGT-LRD-------FFSKNQRVQTVAKQTVKKLTGQNE---EECTVPTLGHYGAYCCEDLPAPF 303 (317)
T ss_dssp CTTCCCBHHH-HHH-------HHHTCHHHHHHHHHHHHHHHSSSS---CCCSSTTCEEETTEEEBCCTTTH
T ss_pred ccCCCccCcC-HHH-------HHhccccceEEECCCchhccCCch---hccCCCceecccceeeccCChhH
Confidence 9988733111 122 234568899998888887765432 12223444444445566665433
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=3.4e-20 Score=177.52 Aligned_cols=230 Identities=16% Similarity=0.135 Sum_probs=184.7
Q ss_pred CCCCCcccccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCcccc---ChhHHhCCCCccEEEEeCCcCccC
Q 037920 63 YREWSDESAIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTI---PNKFFERMMQVRVINLTNINLMSL 137 (505)
Q Consensus 63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~l 137 (505)
++.++. ...+++++|++++|.+..++.. ..+++|++|++ .++.+..+ +..+ ..+++|++|++++|.++.+
T Consensus 19 l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l 93 (306)
T 2z66_A 19 LTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSL---SSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITM 93 (306)
T ss_dssp CSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC---CSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEE
T ss_pred cccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEEC---CCCccCcccCccccc-ccccccCEEECCCCccccC
Confidence 445444 4567999999999999988864 49999999999 44544433 4444 6799999999999999999
Q ss_pred cccccCCCCCCeeEeeccCCCC-c--ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCC-ccChhhhc
Q 037920 138 PSSLGLLSNLRTLSLDNCKLLD-I--TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELE-VIPANVLS 212 (505)
Q Consensus 138 ~~~l~~l~~L~~L~L~~~~l~~-~--~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~-~~~~~~~~ 212 (505)
|..+..+++|++|++++|.+.. + ..+..+++|++|++++|.++.. +..+..+++|++|++++|.... .+|.. +.
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~ 172 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FT 172 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CT
T ss_pred hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-Hh
Confidence 9999999999999999999887 3 5789999999999999998865 5668899999999999954433 35655 78
Q ss_pred CCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEe
Q 037920 213 NLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKI 292 (505)
Q Consensus 213 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l 292 (505)
.+++|++|++++|.+. +..+..+..+++|+.|++++|.+..++...
T Consensus 173 ~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------------------------- 218 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLE-------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--------------------------- 218 (306)
T ss_dssp TCTTCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTSCCSBCCSGG---------------------------
T ss_pred hCcCCCEEECCCCCcC-------CcCHHHhcCCCCCCEEECCCCccCccChhh---------------------------
Confidence 9999999999999884 444678899999999999999987765431
Q ss_pred cCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCC-CCccEEEEeCCC
Q 037920 293 CPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGP-SQLKHLHIWNHP 348 (505)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l-~~L~~L~l~~~~ 348 (505)
...+++|+.|++++| ......+..+ ..+ ++|++|++++|+
T Consensus 219 ------------~~~l~~L~~L~L~~N--~l~~~~~~~~--~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 219 ------------YKCLNSLQVLDYSLN--HIMTSKKQEL--QHFPSSLAFLNLTQND 259 (306)
T ss_dssp ------------GTTCTTCCEEECTTS--CCCBCSSSSC--CCCCTTCCEEECTTCC
T ss_pred ------------ccCcccCCEeECCCC--CCcccCHHHH--HhhhccCCEEEccCCC
Confidence 012678999999998 4445555555 556 499999999987
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.7e-19 Score=181.76 Aligned_cols=243 Identities=19% Similarity=0.247 Sum_probs=176.8
Q ss_pred CccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEE
Q 037920 96 QLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEIL 172 (505)
Q Consensus 96 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L 172 (505)
..+.++. ....+..+|..+ .+++++|++++|.++.++ ..+..+++|++|++++|.+.. +..+..+++|++|
T Consensus 44 ~~~~v~c---~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 44 QFSKVIC---VRKNLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp TSCEEEC---CSCCCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CCCEEEe---CCCCcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 3556666 666777888755 478999999999999865 689999999999999999988 4789999999999
Q ss_pred EccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEE
Q 037920 173 CLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSL 251 (505)
Q Consensus 173 ~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 251 (505)
++++|+++.+|. .+..+++|++|++++ +.+..++...+..+++|++|++++|.... ...+..+..+++|+.|
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~------~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLS------YISEGAFEGLSNLRYL 190 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCC------EECTTTTTTCSSCCEE
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcc------eeCcchhhcccccCee
Confidence 999999998875 588999999999999 56778877668999999999999865421 2223468899999999
Q ss_pred EeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhh
Q 037920 252 ELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNEL 331 (505)
Q Consensus 252 ~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 331 (505)
++++|.+..+|.... +++|+.|++++| ......+..+
T Consensus 191 ~L~~n~l~~~~~~~~-----------------------------------------l~~L~~L~Ls~N--~l~~~~~~~~ 227 (440)
T 3zyj_A 191 NLAMCNLREIPNLTP-----------------------------------------LIKLDELDLSGN--HLSAIRPGSF 227 (440)
T ss_dssp ECTTSCCSSCCCCTT-----------------------------------------CSSCCEEECTTS--CCCEECTTTT
T ss_pred cCCCCcCccccccCC-----------------------------------------CcccCEEECCCC--ccCccChhhh
Confidence 999999888775322 456666666666 2222334444
Q ss_pred hccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccC
Q 037920 332 AKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSC 411 (505)
Q Consensus 332 ~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c 411 (505)
..+++|+.|++++|.... +. . .....+++|+.|++++|+++.++...
T Consensus 228 --~~l~~L~~L~L~~n~l~~------~~----------------~---~~~~~l~~L~~L~L~~N~l~~~~~~~------ 274 (440)
T 3zyj_A 228 --QGLMHLQKLWMIQSQIQV------IE----------------R---NAFDNLQSLVEINLAHNNLTLLPHDL------ 274 (440)
T ss_dssp --TTCTTCCEEECTTCCCCE------EC----------------T---TSSTTCTTCCEEECTTSCCCCCCTTT------
T ss_pred --ccCccCCEEECCCCceeE------EC----------------h---hhhcCCCCCCEEECCCCCCCccChhH------
Confidence 566777777777765110 00 0 11124667777777777666654321
Q ss_pred ccccccccccEEEEcccc
Q 037920 412 VSNNTFVRLQRIEIKNCR 429 (505)
Q Consensus 412 ~~l~~l~~L~~L~l~~c~ 429 (505)
+..+++|++|++++++
T Consensus 275 --~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 275 --FTPLHHLERIHLHHNP 290 (440)
T ss_dssp --TSSCTTCCEEECCSSC
T ss_pred --hccccCCCEEEcCCCC
Confidence 4556777777776654
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.3e-19 Score=183.13 Aligned_cols=228 Identities=21% Similarity=0.252 Sum_probs=183.1
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS 139 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 139 (505)
++..++. ...+++++|++++|.+..++. ...+++|+.|++ .++.+..++...|.++++|++|++++|.++.+|.
T Consensus 65 ~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L---s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 65 GLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQL---GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC---CSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred CcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEEC---CCCccCCcChhhccCcccCCEEECCCCcCCccCh
Confidence 4455443 456789999999999977743 349999999999 6666777776678999999999999999999776
Q ss_pred -cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCC-CCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCC
Q 037920 140 -SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGS-NIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNL 214 (505)
Q Consensus 140 -~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l 214 (505)
.+..+++|++|++++|.+.. + ..+.++++|++|++++| .++.++. .+..+++|++|++++ +.+..+|. +..+
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l 217 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--LTPL 217 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--CTTC
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--cccc
Confidence 48889999999999999988 4 67899999999999995 6777764 588999999999999 56677775 7899
Q ss_pred CCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCC-C-CCCCcEEEEEEcceeecccccceEEe
Q 037920 215 SHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGL-F-FPKLQRYKIHIGGYYYAGVWRRELKI 292 (505)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~-~~~L~~L~~~~~~~~~~~~~~~~l~l 292 (505)
++|++|++++|.+ .+..+..+..+++|+.|++++|.+..++... . +++|+.|++..+..
T Consensus 218 ~~L~~L~Ls~N~l-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l------------ 278 (452)
T 3zyi_A 218 VGLEELEMSGNHF-------PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL------------ 278 (452)
T ss_dssp TTCCEEECTTSCC-------SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC------------
T ss_pred ccccEEECcCCcC-------cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC------------
Confidence 9999999999988 4455678999999999999999998665433 3 88999988753321
Q ss_pred cCCCCccchhhHHHHhcceeEEeecCCC
Q 037920 293 CPDSKIRLKDGLIVQLQGIEDLGLSKLP 320 (505)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 320 (505)
...+......+++|+.|++.+|+
T Consensus 279 -----~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 -----SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -----SCCCTTSSTTCTTCCEEECCSSC
T ss_pred -----CccChHHhccccCCCEEEccCCC
Confidence 11222222337899999999983
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.3e-21 Score=204.99 Aligned_cols=195 Identities=14% Similarity=0.067 Sum_probs=108.7
Q ss_pred ccCCCcEEEecCCCCccC--CCCCC-CCC-ccEEEeeecCCCCccc-cChhHHhCCCCccEEEEeCCcCcc-----Cccc
Q 037920 71 AIKLYTSIVLHDIRTNLL--PEVVE-SPQ-LKLLFICADQESSSLT-IPNKFFERMMQVRVINLTNINLMS-----LPSS 140 (505)
Q Consensus 71 ~~~~l~~l~l~~~~~~~l--~~~~~-~~~-L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~-----l~~~ 140 (505)
.++++++|+++++.+... ..... +++ |++|++ ..+..... -...+...+++|++|++++|.++. ++..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L--~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL--DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE--ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC--cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 456677777776655221 11111 233 777777 23221111 111223466777777777776543 2223
Q ss_pred ccCCCCCCeeEeeccCCCC------cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCC---CccChhhh
Q 037920 141 LGLLSNLRTLSLDNCKLLD------ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCREL---EVIPANVL 211 (505)
Q Consensus 141 l~~l~~L~~L~L~~~~l~~------~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~---~~~~~~~~ 211 (505)
+..+++|++|++++|.+.. +..+..+++|++|++++|.+..+|..+..+++|++|+++.+... ...+.. +
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-L 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-C
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-h
Confidence 4556777777777777652 23445677777777777777667766777777777777642221 112222 4
Q ss_pred cCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCC--CCCCC-CCCCCcEEEEE
Q 037920 212 SNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNT--LPRGL-FFPKLQRYKIH 276 (505)
Q Consensus 212 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~~-~~~~L~~L~~~ 276 (505)
..+++|+.+++.++. .+.++..+..+++|+.|++++|.+.. ++..+ .+++|+.|.+.
T Consensus 267 ~~~~~L~~L~l~~~~--------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMG--------PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCCTTCCEEEETTCC--------TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred hccccccccCccccc--------hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 566666666666432 23455566677778888887776532 11111 26777777765
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=2.4e-20 Score=179.46 Aligned_cols=215 Identities=17% Similarity=0.162 Sum_probs=103.3
Q ss_pred CCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEE
Q 037920 94 SPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILC 173 (505)
Q Consensus 94 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~ 173 (505)
+++|+.|++ .++.+..++...|..+++|++|++++|.++..++ +..+++|++|++++|.+.++. ..++|++|+
T Consensus 33 ~~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDL---SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLH 105 (317)
T ss_dssp GGGCSEEEC---TTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred CCCCCEEEC---cCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEE
Confidence 345555555 3333444444344555555555555555554433 555555555555555544411 125555555
Q ss_pred ccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccc-cCCCCcCEEE
Q 037920 174 LRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASL-HELKHLTSLE 252 (505)
Q Consensus 174 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~ 252 (505)
+++|+++.++.. .+++|++|++++ +.+..++...++.+++|++|++++|.+... .+..+ ..+++|+.|+
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTV-------NFAELAASSDTLEHLN 175 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCEE-------EGGGGGGGTTTCCEEE
T ss_pred CCCCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCcc-------cHHHHhhccCcCCEEE
Confidence 555555544322 245555555555 333333332244555555555555554321 12222 2455555555
Q ss_pred eecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhh
Q 037920 253 LHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELA 332 (505)
Q Consensus 253 l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 332 (505)
+++|.+..++....+++|+.|+++.+.. ...+..+ ..+++|+.|++++| .+..+|..+
T Consensus 176 L~~N~l~~~~~~~~l~~L~~L~Ls~N~l-----------------~~l~~~~-~~l~~L~~L~L~~N---~l~~l~~~~- 233 (317)
T 3o53_A 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKL-----------------AFMGPEF-QSAAGVTWISLRNN---KLVLIEKAL- 233 (317)
T ss_dssp CTTSCCCEEECCCCCTTCCEEECCSSCC-----------------CEECGGG-GGGTTCSEEECTTS---CCCEECTTC-
T ss_pred CCCCcCcccccccccccCCEEECCCCcC-----------------Ccchhhh-cccCcccEEECcCC---cccchhhHh-
Confidence 5555554443332233333333321100 0001111 12566777777776 444556555
Q ss_pred ccCCCCccEEEEeCCC
Q 037920 333 KVGPSQLKHLHIWNHP 348 (505)
Q Consensus 333 ~~~l~~L~~L~l~~~~ 348 (505)
..+++|+.|++++|+
T Consensus 234 -~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 234 -RFSQNLEHFDLRGNG 248 (317)
T ss_dssp -CCCTTCCEEECTTCC
T ss_pred -hcCCCCCEEEccCCC
Confidence 566777777777765
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=7.6e-19 Score=166.39 Aligned_cols=199 Identities=23% Similarity=0.298 Sum_probs=171.1
Q ss_pred cccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCe
Q 037920 70 SAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRT 149 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~ 149 (505)
..+++++.++++++.++.+|... .++++.|++ .++.+..++...|..+++|++|++++|.++.++.. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L---~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHL---SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEEC---TTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCC-CCCCCEEEc---CCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 45678999999999999988654 379999999 66666777666679999999999999999998764 78999999
Q ss_pred eEeeccCCCC-cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920 150 LSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 150 L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
|++++|.+.. |..+..+++|++|++++|+++.+| ..+..+++|++|++++ +.+..++...+..+++|+.|++++|.+
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcC
Confidence 9999999998 788899999999999999999986 5689999999999999 567788877678999999999999988
Q ss_pred CCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC-CCCCcEEEEEEccee
Q 037920 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF-FPKLQRYKIHIGGYY 281 (505)
Q Consensus 228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~~~~~~~~ 281 (505)
...+ +..+..+++|+.|++++|.+..+|..+. ..+|+.+.+..+.|.
T Consensus 161 ~~l~-------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELP-------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCC-------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccC-------HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 5432 2456889999999999999999998876 778999988766554
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=1.5e-18 Score=166.04 Aligned_cols=195 Identities=16% Similarity=0.233 Sum_probs=169.2
Q ss_pred cccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCC
Q 037920 68 DESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNL 147 (505)
Q Consensus 68 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L 147 (505)
....++++++|+++++.+..++....+++|+.|++ .++.+..++. +..+++|++|++++|.++.++ .+..+++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L---~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L 109 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLEL---KDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSI 109 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTC
T ss_pred cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEc---cCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCC
Confidence 34568899999999999999988779999999999 6666777776 689999999999999999885 68999999
Q ss_pred CeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920 148 RTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 148 ~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
++|++++|.+..++.+..+++|++|++++|.++.++. +..+++|++|++++| .+..++. +..+++|+.|++++|.+
T Consensus 110 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp CEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred CEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCcc
Confidence 9999999999996569999999999999999998875 899999999999994 6666666 78999999999999988
Q ss_pred CCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEccee
Q 037920 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYY 281 (505)
Q Consensus 228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~ 281 (505)
...+ .+..+++|+.|++++|.+..++....+++|+.|++..+.+.
T Consensus 186 ~~~~---------~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDIS---------PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCG---------GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred CcCh---------hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 5532 27889999999999999998875444999999999876543
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.7e-18 Score=162.54 Aligned_cols=198 Identities=26% Similarity=0.396 Sum_probs=160.8
Q ss_pred cCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc-ccCCCCCCee
Q 037920 72 IKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSNLRTL 150 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L 150 (505)
....+.++++++.++.+|... .++++.|++ .++.+..++...|.++++|++|++++|.++.+|.. +..+++|++|
T Consensus 15 ~~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 15 NNNKNSVDCSSKKLTAIPSNI-PADTKKLDL---QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp ETTTTEEECTTSCCSSCCSCC-CTTCSEEEC---CSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCCCEEEccCCCCCccCCCC-CCCCCEEEC---cCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 346788999999998888643 368999999 66667777776678999999999999999987765 4789999999
Q ss_pred EeeccCCCC-c-ccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920 151 SLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 151 ~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
++++|.+.. + ..+..+++|++|++++|.++.++. .+..+++|++|++++ +.+..++...++.+++|++|++++|.+
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcC
Confidence 999999888 4 567889999999999999988864 468899999999998 566777776578899999999999987
Q ss_pred CCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC--CCCCcEEEEEEccee
Q 037920 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIHIGGYY 281 (505)
Q Consensus 228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~~~~~~~~ 281 (505)
... .+..+..+++|+.|++++|.+..+|.... +++|+.|++..+.|.
T Consensus 170 ~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 170 KRV-------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SCC-------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cEe-------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 443 33567889999999999999988877543 788898888655544
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=1.3e-21 Score=198.58 Aligned_cols=343 Identities=22% Similarity=0.194 Sum_probs=172.5
Q ss_pred HhCCCCccEEEEeCCcCc-----cCcccccCCCCCCeeEeeccCCCC--ccccc-CCC----CCcEEEccCCCCc-----
Q 037920 118 FERMMQVRVINLTNINLM-----SLPSSLGLLSNLRTLSLDNCKLLD--ITVVR-DLK----KLEILCLRGSNIK----- 180 (505)
Q Consensus 118 ~~~l~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~L~~~~l~~--~~~i~-~l~----~L~~L~l~~~~l~----- 180 (505)
+..+++|++|++++|.++ .++..+..+++|++|++++|.+.+ +..+. .++ +|++|++++|+++
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 445555555555555554 234445555555555555555444 22221 222 4555555555554
Q ss_pred ccchhhhCCCCCCEEeeeCCCCCCcc-Ch----hhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeec
Q 037920 181 MLPIEVSELARLRLLGLRDCRELEVI-PA----NVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHI 255 (505)
Q Consensus 181 ~lp~~i~~l~~L~~L~l~~~~~~~~~-~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 255 (505)
.++..+.++++|++|++++|. +... +. ......++|++|++++|.+.... ...++..+..+++|+.|++++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---~~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS---CEPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG---HHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH---HHHHHHHHhhCCCCCEEECcC
Confidence 234455555555555555533 2211 11 10112345555555555543321 012333444455555555555
Q ss_pred ccCCCC-----CCCCC--CCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcch--
Q 037920 256 KDVNTL-----PRGLF--FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDY-- 326 (505)
Q Consensus 256 ~~~~~l-----~~~~~--~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-- 326 (505)
|.+... ..... .++|+.|++..+.... .+....+..+ ..+++|++|++++| .....
T Consensus 180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~------------~~~~~l~~~l-~~~~~L~~L~Ls~n--~l~~~~~ 244 (461)
T 1z7x_W 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS------------DNCRDLCGIV-ASKASLRELALGSN--KLGDVGM 244 (461)
T ss_dssp SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT------------THHHHHHHHH-HHCTTCCEEECCSS--BCHHHHH
T ss_pred CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH------------HHHHHHHHHH-HhCCCccEEeccCC--cCChHHH
Confidence 554321 11000 2355555442110000 0000112223 34799999999998 32222
Q ss_pred --hhhhhhccCCCCccEEEEeCCCCCC------cccccccc-chhcchhhhhhhhcccccccccc-cccccccccccccc
Q 037920 327 --FVNELAKVGPSQLKHLHIWNHPPNP------AESKRREE-STDVMQSHEIILKVNVNALFVEK-VTLPKLENLELDSI 396 (505)
Q Consensus 327 --~~~~l~~~~l~~L~~L~l~~~~~~~------~~~l~~L~-l~~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 396 (505)
+...+. ..+++|++|++++|.-.. ...+..++ ++.++++.+.+.+.....+.... ...++|++|++++|
T Consensus 245 ~~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 245 AELCPGLL-HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHT-STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHh-cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 222221 358999999999996322 11111122 45666666665543222221111 12468999999999
Q ss_pred ccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCccccccc--ccCCccc
Q 037920 397 NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLRNF--CTGDVDI 474 (505)
Q Consensus 397 ~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~~--~~~~~~~ 474 (505)
.+.......+ ... +..+++|++|++++|. +++.....-.... ....++|++|++++|. +... ...+..+
T Consensus 324 ~l~~~~~~~l--~~~--l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l---~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l 394 (461)
T 1z7x_W 324 SFTAACCSHF--SSV--LAQNRFLLELQISNNR-LEDAGVRELCQGL---GQPGSVLRVLWLADCD-VSDSSCSSLAATL 394 (461)
T ss_dssp CCBGGGHHHH--HHH--HHHCSSCCEEECCSSB-CHHHHHHHHHHHH---TSTTCCCCEEECTTSC-CCHHHHHHHHHHH
T ss_pred CCchHHHHHH--HHH--HhhCCCccEEEccCCc-cccccHHHHHHHH---cCCCCceEEEECCCCC-CChhhHHHHHHHH
Confidence 7765421110 111 5667999999999995 6543211111000 1125799999999996 4320 0112246
Q ss_pred ccCCCccceecccCc
Q 037920 475 LEFPSLKELIINRCP 489 (505)
Q Consensus 475 ~~~~~L~~L~i~~C~ 489 (505)
..+++|++|++++|+
T Consensus 395 ~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 395 LANHSLRELDLSNNC 409 (461)
T ss_dssp HHCCCCCEEECCSSS
T ss_pred HhCCCccEEECCCCC
Confidence 678999999999994
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=3.1e-20 Score=178.18 Aligned_cols=246 Identities=18% Similarity=0.160 Sum_probs=155.2
Q ss_pred CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc--Cccccc-------CCCCCCeeEeeccCCCC--cc
Q 037920 93 ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS--LPSSLG-------LLSNLRTLSLDNCKLLD--IT 161 (505)
Q Consensus 93 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~l~-------~l~~L~~L~L~~~~l~~--~~ 161 (505)
..++|+.|.+ .++. + .+|..+... |+.|+++++.++. +|..+. .+++|++|++++|.+.+ |.
T Consensus 41 ~~~~L~~l~l--~~n~-l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 41 GGRSLEYLLK--RVDT-E-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEECTTHHH--HCCT-T-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred cCCCceeEee--cccc-c-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 3456666666 3333 3 667665433 7777888877754 555554 67888888888888775 55
Q ss_pred cc--cCCCCCcEEEccCCCCcccchhhhCC-----CCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhh
Q 037920 162 VV--RDLKKLEILCLRGSNIKMLPIEVSEL-----ARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEM 234 (505)
Q Consensus 162 ~i--~~l~~L~~L~l~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 234 (505)
.+ +.+++|++|++++|+++..|..+..+ ++|++|++++ +.+..++...++.+++|++|++++|.+...
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---- 188 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGE---- 188 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCHH----
T ss_pred HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCcc----
Confidence 54 78888888888888887777666666 7888888888 445555544477888888888888876321
Q ss_pred hccccccc--cCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhccee
Q 037920 235 EGVKNASL--HELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIE 312 (505)
Q Consensus 235 ~~~~~~~l--~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~ 312 (505)
...+..+ ..+++|+.|++++|.+..++. ....+...+++|+
T Consensus 189 -~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------------------------~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 189 -RGLISALCPLKFPTLQVLALRNAGMETPSG------------------------------------VCSALAAARVQLQ 231 (312)
T ss_dssp -HHHHHHSCTTSCTTCCEEECTTSCCCCHHH------------------------------------HHHHHHHTTCCCS
T ss_pred -hHHHHHHHhccCCCCCEEECCCCcCcchHH------------------------------------HHHHHHhcCCCCC
Confidence 1122233 677888888888777543221 1122333357788
Q ss_pred EEeecCCCCCCcchhh-hhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccccccc
Q 037920 313 DLGLSKLPEQDVDYFV-NELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENL 391 (505)
Q Consensus 313 ~L~l~~~~~~~~~~~~-~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 391 (505)
.|++++| ......| ... ..+++|++|++++|.-.. + +. ..+++|++|
T Consensus 232 ~L~Ls~N--~l~~~~~~~~~--~~l~~L~~L~Ls~N~l~~--------------------------i-p~-~~~~~L~~L 279 (312)
T 1wwl_A 232 GLDLSHN--SLRDAAGAPSC--DWPSQLNSLNLSFTGLKQ--------------------------V-PK-GLPAKLSVL 279 (312)
T ss_dssp EEECTTS--CCCSSCCCSCC--CCCTTCCEEECTTSCCSS--------------------------C-CS-SCCSEEEEE
T ss_pred EEECCCC--cCCcccchhhh--hhcCCCCEEECCCCccCh--------------------------h-hh-hccCCceEE
Confidence 8888777 2222222 122 446777888877775110 0 00 012677778
Q ss_pred cccccccccccccceeeccCccccccccccEEEEcccc
Q 037920 392 ELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCR 429 (505)
Q Consensus 392 ~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~ 429 (505)
++++|+++.++. +..+++|++|++++++
T Consensus 280 ~Ls~N~l~~~p~----------~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 280 DLSYNRLDRNPS----------PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ECCSSCCCSCCC----------TTTSCEEEEEECTTCT
T ss_pred ECCCCCCCCChh----------HhhCCCCCEEeccCCC
Confidence 887777766632 5667777777777775
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=1.1e-19 Score=190.33 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=51.2
Q ss_pred cccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCccc
Q 037920 384 TLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEK 463 (505)
Q Consensus 384 ~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 463 (505)
.+++|+.|++++|++.+.....+ +..+++|++|++++|+ ++...... ....+|+|+.|++++|.
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~-------~~~~~~L~~L~l~~n~-l~~~~~~~-------~~~~l~~L~~L~ls~n~- 524 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEF-------SRGCPNLQKLEMRGCC-FSERAIAA-------AVTKLPSLRYLWVQGYR- 524 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHH-------HTCCTTCCEEEEESCC-CBHHHHHH-------HHHHCSSCCEEEEESCB-
T ss_pred hCccceEeeccCCCCCHHHHHHH-------HhcCcccCeeeccCCC-CcHHHHHH-------HHHhcCccCeeECcCCc-
Confidence 47788888888887654321111 4667888888888887 54321111 12356888888888888
Q ss_pred ccccccCCcccccCCCccceeccc
Q 037920 464 LRNFCTGDVDILEFPSLKELIINR 487 (505)
Q Consensus 464 L~~~~~~~~~~~~~~~L~~L~i~~ 487 (505)
+..... ..-...+|.+....|..
T Consensus 525 it~~~~-~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 525 ASMTGQ-DLMQMARPYWNIELIPS 547 (592)
T ss_dssp CCTTCT-TGGGGCCTTEEEEEECC
T ss_pred CCHHHH-HHHHHhCCCcEEEEecC
Confidence 433211 11123456666555544
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=2.1e-19 Score=172.37 Aligned_cols=241 Identities=16% Similarity=0.157 Sum_probs=138.7
Q ss_pred cCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCc--cccChhHH------hCCCCccEEEEeCCcCcc-Ccccc-
Q 037920 72 IKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSS--LTIPNKFF------ERMMQVRVINLTNINLMS-LPSSL- 141 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~------~~l~~L~~L~l~~~~~~~-l~~~l- 141 (505)
.++++.+++++|.+ .+|.... ..|+.|++ ..+.+ ..++..++ .++++|++|++++|.++. +|..+
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L---~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFT-DIIKSLSL---KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHH-HHHHHCCC---CEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc-ccHHHHH-HHHhhccc---ccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34566666666666 4543221 11666666 22222 23443321 156777777777777764 55554
Q ss_pred -cCCCCCCeeEeeccCCCC-cccccCC-----CCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCc--cChh-h
Q 037920 142 -GLLSNLRTLSLDNCKLLD-ITVVRDL-----KKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEV--IPAN-V 210 (505)
Q Consensus 142 -~~l~~L~~L~L~~~~l~~-~~~i~~l-----~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~--~~~~-~ 210 (505)
..+++|++|++++|.+.+ |..++.+ ++|++|++++|+++.++ ..++++++|++|++++|...+. ++.. .
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 667777777777777666 5555544 67777777777776664 5666777777777777543332 1222 0
Q ss_pred hcCCCCccEEEeeCCCCCCchhhhhcccc-ccccCCCCcCEEEeecccCCCCC-CCC--CCCCCcEEEEEEcceeecccc
Q 037920 211 LSNLSHLEELYIGYNSFGKWEVEMEGVKN-ASLHELKHLTSLELHIKDVNTLP-RGL--FFPKLQRYKIHIGGYYYAGVW 286 (505)
Q Consensus 211 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~l~-~~~--~~~~L~~L~~~~~~~~~~~~~ 286 (505)
++.+++|++|++++|.+...+ .++ ..+..+++|+.|++++|.+...+ ... .+++|+.|+++.+..
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l------ 265 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPS-----GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL------ 265 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHH-----HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC------
T ss_pred hccCCCCCEEECCCCcCcchH-----HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc------
Confidence 156677777777777664321 111 22345667777777777766533 111 156666666532110
Q ss_pred cceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920 287 RRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 287 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
...+..+ .++|+.|++++| .++.+|. + ..+++|++|++++|+
T Consensus 266 -----------~~ip~~~---~~~L~~L~Ls~N---~l~~~p~-~--~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 266 -----------KQVPKGL---PAKLSVLDLSYN---RLDRNPS-P--DELPQVGNLSLKGNP 307 (312)
T ss_dssp -----------SSCCSSC---CSEEEEEECCSS---CCCSCCC-T--TTSCEEEEEECTTCT
T ss_pred -----------Chhhhhc---cCCceEEECCCC---CCCCChh-H--hhCCCCCEEeccCCC
Confidence 0111111 268899999988 4444555 4 678999999998886
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=3.3e-18 Score=157.41 Aligned_cols=199 Identities=15% Similarity=0.235 Sum_probs=166.2
Q ss_pred CCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeC-CcCccCc-
Q 037920 63 YREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTN-INLMSLP- 138 (505)
Q Consensus 63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~- 138 (505)
++.++. ...++++|++++|.+..++. ...+++|++|++ .++..+..++...|.++++|++|++++ |.++.++
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l--~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYV--SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEE--ECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeC--CCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 555665 66799999999999988876 338999999999 444347888877789999999999999 9999876
Q ss_pred ccccCCCCCCeeEeeccCCCCcccccCCCCCc---EEEccCC-CCcccch-hhhCCCCCC-EEeeeCCCCCCccChhhhc
Q 037920 139 SSLGLLSNLRTLSLDNCKLLDITVVRDLKKLE---ILCLRGS-NIKMLPI-EVSELARLR-LLGLRDCRELEVIPANVLS 212 (505)
Q Consensus 139 ~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~---~L~l~~~-~l~~lp~-~i~~l~~L~-~L~l~~~~~~~~~~~~~~~ 212 (505)
..+..+++|++|++++|.+..++.++.+++|+ +|++++| +++.+|. .+..+++|+ +|++++ +.+..+|...+.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~ 177 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFN 177 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcC
Confidence 46889999999999999999844488888888 9999999 9998875 488999999 999998 566788876444
Q ss_pred CCCCccEEEeeCCC-CCCchhhhhccccccccCC-CCcCEEEeecccCCCCCCCCCCCCCcEEEE
Q 037920 213 NLSHLEELYIGYNS-FGKWEVEMEGVKNASLHEL-KHLTSLELHIKDVNTLPRGLFFPKLQRYKI 275 (505)
Q Consensus 213 ~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~ 275 (505)
. ++|++|++++|. +... .+..+..+ ++|+.|++++|.+..+|.. .+++|+.|.+
T Consensus 178 ~-~~L~~L~L~~n~~l~~i-------~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYLTVI-------DKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp T-CEEEEEECTTCTTCCEE-------CTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred C-CCCCEEEcCCCCCcccC-------CHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 4 899999999994 7433 34567888 9999999999999988877 5889998876
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=2.5e-18 Score=162.86 Aligned_cols=198 Identities=21% Similarity=0.306 Sum_probs=163.4
Q ss_pred CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeeccCCCCcccccCCCCCcE
Q 037920 93 ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEI 171 (505)
Q Consensus 93 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~ 171 (505)
++++++++++ .+..+..+|..+ .+++++|++++|.++.+ +..+..+++|++|++++|.+..+...+.+++|++
T Consensus 8 ~l~~l~~l~~---~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNC---DKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81 (290)
T ss_dssp CSTTCCEEEC---TTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred ccCCccEEEC---CCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence 6788999999 666777888755 37899999999999885 4678999999999999999988444488999999
Q ss_pred EEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEE
Q 037920 172 LCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSL 251 (505)
Q Consensus 172 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 251 (505)
|++++|+++.+|..+..+++|++|++++ +.+..++...+..+++|++|++++|.+... .+..+..+++|+.|
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTL-------PPGLLTPTPKLEKL 153 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCC-------CTTTTTTCTTCCEE
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCcc-------ChhhcccccCCCEE
Confidence 9999999999998889999999999998 567777765588999999999999988533 33557889999999
Q ss_pred EeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhh
Q 037920 252 ELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNEL 331 (505)
Q Consensus 252 ~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 331 (505)
++++|.+..+|.... ..+++|+.|++++| .+..+|..+
T Consensus 154 ~L~~N~l~~l~~~~~---------------------------------------~~l~~L~~L~L~~N---~l~~ip~~~ 191 (290)
T 1p9a_G 154 SLANNNLTELPAGLL---------------------------------------NGLENLDTLLLQEN---SLYTIPKGF 191 (290)
T ss_dssp ECTTSCCSCCCTTTT---------------------------------------TTCTTCCEEECCSS---CCCCCCTTT
T ss_pred ECCCCcCCccCHHHh---------------------------------------cCcCCCCEEECCCC---cCCccChhh
Confidence 999999888776421 12678888888887 566788777
Q ss_pred hccCCCCccEEEEeCCC
Q 037920 332 AKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 332 ~~~~l~~L~~L~l~~~~ 348 (505)
..+++|+.+++++|+
T Consensus 192 --~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 192 --FGSHLLPFAFLHGNP 206 (290)
T ss_dssp --TTTCCCSEEECCSCC
T ss_pred --cccccCCeEEeCCCC
Confidence 567899999999987
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=4.1e-18 Score=160.47 Aligned_cols=205 Identities=21% Similarity=0.266 Sum_probs=165.3
Q ss_pred CCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-c
Q 037920 63 YREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-S 139 (505)
Q Consensus 63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~ 139 (505)
+..++. ...+++++|++++|.+..++. ...+++|++|++ .++.+..++...|.++++|++|++++|.++.++ .
T Consensus 19 l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 19 FYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL---SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEEC---TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred ccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEEC---CCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 333343 345789999999999987764 348999999999 666677777766799999999999999999865 6
Q ss_pred cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcc--cchhhhCCCCCCEEeeeCCCCCCccChhhhcCCC
Q 037920 140 SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKM--LPIEVSELARLRLLGLRDCRELEVIPANVLSNLS 215 (505)
Q Consensus 140 ~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 215 (505)
.+..+++|++|++++|.+.. + ..++.+++|++|++++|.++. +|..+.++++|++|++++ +.+..++...+..++
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLH 173 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHH
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhh
Confidence 78999999999999999988 3 479999999999999999986 688999999999999999 556666654466556
Q ss_pred Ccc----EEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC--CCCCcEEEEEEcce
Q 037920 216 HLE----ELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYKIHIGGY 280 (505)
Q Consensus 216 ~L~----~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~~~~~~~ 280 (505)
+|+ .|++++|.+... +.......+|+.|++++|.+..+|.... +++|+.|++..+.|
T Consensus 174 ~L~~l~l~L~ls~n~l~~~--------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFI--------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TCTTCCEEEECCSSCCCEE--------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred hccccceeeecCCCccccc--------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 665 899999988533 2233344589999999999998887653 88999998865444
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.4e-17 Score=156.16 Aligned_cols=186 Identities=23% Similarity=0.358 Sum_probs=157.5
Q ss_pred CCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-
Q 037920 63 YREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS- 139 (505)
Q Consensus 63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~- 139 (505)
++.++. ...+++++|++++|.+..++. ...+++|++|++ .++.+..++..+|..+++|++|++++|.++.+|.
T Consensus 28 l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l---~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 103 (270)
T 2o6q_A 28 LTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL---NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG 103 (270)
T ss_dssp CSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEEC---CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred CCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEEC---CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence 444443 345789999999999988875 448999999999 6667778888888999999999999999999775
Q ss_pred cccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCC
Q 037920 140 SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSH 216 (505)
Q Consensus 140 ~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 216 (505)
.+..+++|++|++++|.+.. +..++.+++|++|++++|.++.+|.. +..+++|++|++++ +.+..++...+..+++
T Consensus 104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTE 182 (270)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTT
T ss_pred HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCC
Confidence 56889999999999999988 36688999999999999999988754 78999999999999 5667777665789999
Q ss_pred ccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCC
Q 037920 217 LEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNT 260 (505)
Q Consensus 217 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 260 (505)
|++|++++|.+... .+..+..+++|+.|++++|.+..
T Consensus 183 L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 183 LKTLKLDNNQLKRV-------PEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCEEECCSSCCSCC-------CTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCEEECCCCcCCcC-------CHHHhccccCCCEEEecCCCeeC
Confidence 99999999988543 23567889999999999998653
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=1.1e-19 Score=190.52 Aligned_cols=152 Identities=17% Similarity=0.141 Sum_probs=97.1
Q ss_pred ccCCCcEEEecCCCC-ccCC---C------------C-CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCC-
Q 037920 71 AIKLYTSIVLHDIRT-NLLP---E------------V-VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNI- 132 (505)
Q Consensus 71 ~~~~l~~l~l~~~~~-~~l~---~------------~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~- 132 (505)
..++++++++.++.. ..+. . . ..+++|+.|++ .++......+..+...+++|+.|++++|
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L--~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRL--KRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEE--ESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEe--eCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 457788888887653 2111 0 1 15778888888 4444333333444346788888888888
Q ss_pred cCcc--CcccccCCCCCCeeEeeccCCCC--cccc----cCCCCCcEEEccCCC--Cc--ccchhhhCCCCCCEEeeeCC
Q 037920 133 NLMS--LPSSLGLLSNLRTLSLDNCKLLD--ITVV----RDLKKLEILCLRGSN--IK--MLPIEVSELARLRLLGLRDC 200 (505)
Q Consensus 133 ~~~~--l~~~l~~l~~L~~L~L~~~~l~~--~~~i----~~l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~ 200 (505)
.++. ++..+..+++|++|++++|.+.+ +..+ ..+++|+.|++++|. +. .++..+.++++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 4444 44445578888888888887655 2223 266788888888875 22 23333456788888888887
Q ss_pred CCCCccChhhhcCCCCccEEEeeCC
Q 037920 201 RELEVIPANVLSNLSHLEELYIGYN 225 (505)
Q Consensus 201 ~~~~~~~~~~~~~l~~L~~L~l~~~ 225 (505)
..+..++.. +..+++|++|++..+
T Consensus 222 ~~~~~l~~~-~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 222 VPLEKLATL-LQRAPQLEELGTGGY 245 (594)
T ss_dssp SCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred CcHHHHHHH-HhcCCcceEcccccc
Confidence 665555554 677788888876654
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.1e-18 Score=177.67 Aligned_cols=212 Identities=16% Similarity=0.161 Sum_probs=132.1
Q ss_pred cCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCe
Q 037920 72 IKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRT 149 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~ 149 (505)
++++++|++++|.+..++. ...+++|++|++ +++.+...++ +..+++|++|++++|.++.+|. .++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---s~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNL---SSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEEC---TTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEe---eCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCE
Confidence 3367777777777765542 236677777777 3343433333 4667777777777776665543 266777
Q ss_pred eEeeccCCCC-cccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920 150 LSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 150 L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
|++++|.+.. +.. .+++|+.|++++|.++.+ |..++++++|++|++++|...+..|....+.+++|++|++++|.+
T Consensus 104 L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 104 LHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp EECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred EECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 7777777666 322 346677777777766655 345666677777777664333333333122566777777776666
Q ss_pred CCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHH
Q 037920 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQ 307 (505)
Q Consensus 228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 307 (505)
...+ ....+++|+.|++++|.+..+|.. + ..
T Consensus 182 ~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~---------------------------------------~-~~ 212 (487)
T 3oja_A 182 YDVK---------GQVVFAKLKTLDLSSNKLAFMGPE---------------------------------------F-QS 212 (487)
T ss_dssp CEEE---------CCCCCTTCCEEECCSSCCCEECGG---------------------------------------G-GG
T ss_pred cccc---------ccccCCCCCEEECCCCCCCCCCHh---------------------------------------H-cC
Confidence 4321 133466677777776666544432 1 12
Q ss_pred hcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920 308 LQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 308 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
+++|+.|++++| .+..+|..+ ..+++|+.|++++|+
T Consensus 213 l~~L~~L~Ls~N---~l~~lp~~l--~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 213 AAGVTWISLRNN---KLVLIEKAL--RFSQNLEHFDLRGNG 248 (487)
T ss_dssp GTTCSEEECTTS---CCCEECTTC--CCCTTCCEEECTTCC
T ss_pred CCCccEEEecCC---cCcccchhh--ccCCCCCEEEcCCCC
Confidence 688999999998 455678776 778999999999987
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=4.8e-20 Score=193.21 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=92.9
Q ss_pred ccCCCcEEEecCCCCccC--CCCC-CCCCccEEEeeecCCCCccc-cChhHHhCCCCccEEEEeCCcCcc-----Ccccc
Q 037920 71 AIKLYTSIVLHDIRTNLL--PEVV-ESPQLKLLFICADQESSSLT-IPNKFFERMMQVRVINLTNINLMS-----LPSSL 141 (505)
Q Consensus 71 ~~~~l~~l~l~~~~~~~l--~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~-----l~~~l 141 (505)
.++++++|+++++.+... .... .+++|++|++ ..+...+. ....++.++++|++|++++|.++. ++...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L--~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL--SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE--ESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC--CCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 467899999999987322 2222 6899999999 44434333 123445689999999999998765 33333
Q ss_pred cCCCCCCeeEeeccC--CCC--c-ccccCCCCCcEEEccCC-CCcccchhhhCCCCCCEEeeeCC
Q 037920 142 GLLSNLRTLSLDNCK--LLD--I-TVVRDLKKLEILCLRGS-NIKMLPIEVSELARLRLLGLRDC 200 (505)
Q Consensus 142 ~~l~~L~~L~L~~~~--l~~--~-~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~ 200 (505)
..+++|++|++++|. +.. + ..+..+++|++|++++| .++.+|..+.++++|++|++..+
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 477899999999987 332 2 23356899999999998 56677778888899999986654
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=9.6e-18 Score=157.91 Aligned_cols=215 Identities=19% Similarity=0.271 Sum_probs=164.6
Q ss_pred EEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEeecc
Q 037920 77 SIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNC 155 (505)
Q Consensus 77 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~ 155 (505)
.++-.+..+..+|... .++|++|++ .++.+..++...|..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~l---s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDL---SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEEC---TTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccCCCC-CCCccEEEC---CCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 4555666667777643 367999999 6666777776567889999999999999988654 7889999999999999
Q ss_pred CCCC--cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCc--cChhhhcCCCCccEEEeeCCCCCCc
Q 037920 156 KLLD--ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEV--IPANVLSNLSHLEELYIGYNSFGKW 230 (505)
Q Consensus 156 ~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~ 230 (505)
.+.. +..+..+++|++|++++|+++.++. .+.++++|++|++++| .+.. +|.. ++.+++|++|++++|.+...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCcC
Confidence 9888 4778999999999999999988754 6889999999999984 4444 5665 78999999999999988543
Q ss_pred hhhhhccccccccCCCCcC----EEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHH
Q 037920 231 EVEMEGVKNASLHELKHLT----SLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIV 306 (505)
Q Consensus 231 ~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 306 (505)
. +..+..+++|+ .|++++|.+..++.... .
T Consensus 165 ~-------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~---------------------------------------~ 198 (276)
T 2z62_A 165 Y-------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---------------------------------------K 198 (276)
T ss_dssp C-------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSS---------------------------------------C
T ss_pred C-------HHHhhhhhhccccceeeecCCCcccccCcccc---------------------------------------C
Confidence 2 24455555555 78888888876654421 0
Q ss_pred HhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920 307 QLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 307 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
..+|+.|++++| .++.+|.... ..+++|+.|++++|+
T Consensus 199 -~~~L~~L~L~~n---~l~~~~~~~~-~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 199 -EIRLKELALDTN---QLKSVPDGIF-DRLTSLQKIWLHTNP 235 (276)
T ss_dssp -SCCEEEEECCSS---CCSCCCTTTT-TTCCSCCEEECCSSC
T ss_pred -CCcccEEECCCC---ceeecCHhHh-cccccccEEEccCCc
Confidence 247899999988 4555555432 678999999999987
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=3e-18 Score=160.93 Aligned_cols=179 Identities=22% Similarity=0.317 Sum_probs=135.6
Q ss_pred CcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCC
Q 037920 67 SDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLS 145 (505)
Q Consensus 67 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~ 145 (505)
.....+++++.+++.++.+..++....+++|++|++ .++.+..++. +..+++|++|++++|.++.++. .+..++
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l---~~n~l~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLAL---GGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEEC---TTSCCCCCGG--GTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccccccceeeeeeCCCCcccccccccCCCCcEEEC---CCCCCCCchh--hcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 344567888899998888888887778888888888 4455555542 5788888888888888888655 367888
Q ss_pred CCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEe
Q 037920 146 NLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI 222 (505)
Q Consensus 146 ~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 222 (505)
+|++|++++|.+.. + ..++.+++|++|++++|+++.+|.. +.++++|++|++++| .+..++...++.+++|++|++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEEC
Confidence 88888888888877 3 4577888888888888888877644 577888888888884 555666554678888888888
Q ss_pred eCCCCCCchhhhhccccccccCCCCcCEEEeecccC
Q 037920 223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDV 258 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 258 (505)
++|.+. +..+..+..+++|+.|++++|.+
T Consensus 189 ~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 189 YQNQLK-------SVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CSSCCS-------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCcCC-------ccCHHHHhCCcCCCEEEccCCCc
Confidence 888774 33345577788888888887764
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=1.5e-17 Score=156.16 Aligned_cols=193 Identities=22% Similarity=0.314 Sum_probs=149.1
Q ss_pred CCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEee
Q 037920 74 LYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLD 153 (505)
Q Consensus 74 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~ 153 (505)
++..+.+..+.+........+++|+.|.+ .++.+..++. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l---~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIA---NNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEEC---TTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccccccccccceeeeee---CCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence 34445555555555555557888999999 5555666654 578999999999999988864 68889999999999
Q ss_pred ccCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCc
Q 037920 154 NCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKW 230 (505)
Q Consensus 154 ~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 230 (505)
+|.+.. + ..++.+++|++|++++|+++.++.. +..+++|++|++++| .+..++...++.+++|++|++++|.+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 171 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS- 171 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc-
Confidence 999888 3 5578899999999999998888654 688899999999884 5667776656889999999999998743
Q ss_pred hhhhhccccccccCCCCcCEEEeecccCCCCCCCC-C-CCCCcEEEEEEcce
Q 037920 231 EVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGL-F-FPKLQRYKIHIGGY 280 (505)
Q Consensus 231 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~-~~~L~~L~~~~~~~ 280 (505)
..+..+..+++|+.|++++|.+..++... . +++|+.|++..+.|
T Consensus 172 ------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 172 ------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp ------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 33455788899999999999988777654 2 88888888765443
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=1.8e-17 Score=158.49 Aligned_cols=183 Identities=18% Similarity=0.258 Sum_probs=158.9
Q ss_pred CCCCCcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccccc
Q 037920 63 YREWSDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLG 142 (505)
Q Consensus 63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~ 142 (505)
+..++....++++++|++++|.+..++....+++|+.|++ .++.+..++. +..+++|++|++++|.++.++. +.
T Consensus 53 i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L---~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~ 126 (308)
T 1h6u_A 53 VTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELEL---SGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-LA 126 (308)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEEC---CSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-GT
T ss_pred ccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEc---cCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-hc
Confidence 4555667789999999999999988888779999999999 5566666764 6899999999999999999865 89
Q ss_pred CCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEe
Q 037920 143 LLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYI 222 (505)
Q Consensus 143 ~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 222 (505)
.+++|++|++++|.+.....++.+++|++|++++|.++.++. +..+++|+.|++++ +.+..++. +..+++|++|++
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L 202 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD-NKISDISP--LASLPNLIEVHL 202 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEEC
T ss_pred CCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC-CccCcChh--hcCCCCCCEEEc
Confidence 999999999999999995559999999999999999999876 89999999999999 56666665 789999999999
Q ss_pred eCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC
Q 037920 223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG 264 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 264 (505)
++|.+.... .+..+++|+.|++++|.+...|..
T Consensus 203 ~~N~l~~~~---------~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 203 KNNQISDVS---------PLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp TTSCCCBCG---------GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred cCCccCccc---------cccCCCCCCEEEccCCeeecCCee
Confidence 999885432 378999999999999998776654
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=9.4e-18 Score=154.39 Aligned_cols=204 Identities=22% Similarity=0.272 Sum_probs=158.5
Q ss_pred CccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCc-CccCcc-cccCCCCCCeeEeec-cCCCC-c
Q 037920 85 TNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNIN-LMSLPS-SLGLLSNLRTLSLDN-CKLLD-I 160 (505)
Q Consensus 85 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~-~l~~l~~L~~L~L~~-~~l~~-~ 160 (505)
++.+|. -.++++.|++ .++.+..++...|..+++|++|++++|. ++.++. .+..+++|++|++++ |.+.. +
T Consensus 23 l~~ip~--~~~~l~~L~l---~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKL---IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEE---ESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CCCcccEEEE---eCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 677777 4458999999 6666777887777899999999999997 888765 788999999999998 88888 3
Q ss_pred -ccccCCCCCcEEEccCCCCcccchhhhCCCCCC---EEeeeCCCCCCccChhhhcCCCCcc-EEEeeCCCCCCchhhhh
Q 037920 161 -TVVRDLKKLEILCLRGSNIKMLPIEVSELARLR---LLGLRDCRELEVIPANVLSNLSHLE-ELYIGYNSFGKWEVEME 235 (505)
Q Consensus 161 -~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~ 235 (505)
..+..+++|++|++++|.++.+|. +..+++|+ +|++++|..+..++...+..+++|+ +|++++|.+..+
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i----- 171 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV----- 171 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-----
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-----
Confidence 678899999999999999998886 88888888 9999996478888876688899999 999999887433
Q ss_pred ccccccccCCCCcCEEEeeccc-CCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHh-cceeE
Q 037920 236 GVKNASLHELKHLTSLELHIKD-VNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQL-QGIED 313 (505)
Q Consensus 236 ~~~~~~l~~l~~L~~L~l~~~~-~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~-~~L~~ 313 (505)
|......++|+.|++++|. +..++.... ..+ ++|+.
T Consensus 172 ---~~~~~~~~~L~~L~L~~n~~l~~i~~~~~---------------------------------------~~l~~~L~~ 209 (239)
T 2xwt_C 172 ---QGYAFNGTKLDAVYLNKNKYLTVIDKDAF---------------------------------------GGVYSGPSL 209 (239)
T ss_dssp ---CTTTTTTCEEEEEECTTCTTCCEECTTTT---------------------------------------TTCSBCCSE
T ss_pred ---CHhhcCCCCCCEEEcCCCCCcccCCHHHh---------------------------------------hccccCCcE
Confidence 3333333789999999884 776654321 114 67888
Q ss_pred EeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920 314 LGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 314 L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
|++++| .++.+|.. .+++|+.|++.++.
T Consensus 210 L~l~~N---~l~~l~~~----~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 210 LDVSQT---SVTALPSK----GLEHLKELIARNTW 237 (239)
T ss_dssp EECTTC---CCCCCCCT----TCTTCSEEECTTC-
T ss_pred EECCCC---ccccCChh----HhccCceeeccCcc
Confidence 888887 44455543 47888888887764
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=2e-17 Score=156.73 Aligned_cols=177 Identities=24% Similarity=0.358 Sum_probs=146.5
Q ss_pred cccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCC
Q 037920 68 DESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNL 147 (505)
Q Consensus 68 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L 147 (505)
....+++++++++++|.+..++....+++|++|++ .++.+..++. +..+++|++|++++|.++.++. +..+++|
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L---~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL---NGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKL 114 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTC
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEc---cCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCC
Confidence 34567889999999999988887778999999999 5666666666 6889999999999999888754 8889999
Q ss_pred CeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920 148 RTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 148 ~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
++|++++|.+..++.++.+++|++|++++|+++.+ ..+..+++|++|++++ +.+..++. +..+++|+.|++++|.+
T Consensus 115 ~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcC
Confidence 99999999988877888899999999999988888 5788899999999988 45666655 78899999999999887
Q ss_pred CCchhhhhccccccccCCCCcCEEEeecccCCCCCC
Q 037920 228 GKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPR 263 (505)
Q Consensus 228 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 263 (505)
... + .+..+++|+.|++++|.+...|.
T Consensus 191 ~~l--------~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 191 SDL--------R-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CBC--------G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred CCC--------h-hhccCCCCCEEECcCCcccCCcc
Confidence 543 2 37888999999999888766553
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=4.8e-17 Score=150.79 Aligned_cols=176 Identities=23% Similarity=0.351 Sum_probs=145.6
Q ss_pred CCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeE
Q 037920 73 KLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLS 151 (505)
Q Consensus 73 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~ 151 (505)
...++++++++.+..+|.... ++++.|++ .++.+..++...|.++++|++|++++|.++.++. .+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDL---QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEEC---TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEc---cCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 456789999999988886543 78999999 6666666766667899999999999999998654 578999999999
Q ss_pred eeccCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCC
Q 037920 152 LDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFG 228 (505)
Q Consensus 152 L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 228 (505)
+++|.+.. + ..+..+++|++|++++|+++.+|.. +..+++|++|++++ +.+..++...++.+++|++|++++|.+.
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99999888 4 6778999999999999999988755 58899999999998 5677777755889999999999999884
Q ss_pred CchhhhhccccccccCCCCcCEEEeecccCCC
Q 037920 229 KWEVEMEGVKNASLHELKHLTSLELHIKDVNT 260 (505)
Q Consensus 229 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 260 (505)
. ..+..+..+++|+.|++++|.+..
T Consensus 169 ~-------~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 169 S-------VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp C-------CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred c-------cCHHHHhCCCCCCEEEeeCCceeC
Confidence 3 334568888999999999888754
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=2.6e-18 Score=174.81 Aligned_cols=177 Identities=13% Similarity=0.080 Sum_probs=148.3
Q ss_pred cccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCC
Q 037920 68 DESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNL 147 (505)
Q Consensus 68 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L 147 (505)
....++++++|++++|.+...++...+++|++|++ +++.+..++. .++|++|++++|.++.++.. .+++|
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~L---s~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~--~l~~L 122 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDL---NNNYVQELLV-----GPSIETLHAANNNISRVSCS--RGQGK 122 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEEC---CSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC--CCSSC
T ss_pred HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEe---cCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc--ccCCC
Confidence 34578899999999999976666779999999999 6666666653 38999999999999987653 57899
Q ss_pred CeeEeeccCCCC--cccccCCCCCcEEEccCCCCccc-chhhh-CCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEee
Q 037920 148 RTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKML-PIEVS-ELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG 223 (505)
Q Consensus 148 ~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 223 (505)
++|++++|.+.+ +..++.+++|++|++++|.++.. |..+. .+++|++|++++ +.+..++. ...+++|+.|+++
T Consensus 123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~~--~~~l~~L~~L~Ls 199 (487)
T 3oja_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY-NFIYDVKG--QVVFAKLKTLDLS 199 (487)
T ss_dssp EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT-SCCCEEEC--CCCCTTCCEEECC
T ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC-Cccccccc--cccCCCCCEEECC
Confidence 999999999998 56889999999999999999875 55665 799999999999 45666665 4679999999999
Q ss_pred CCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCC
Q 037920 224 YNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGL 265 (505)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~ 265 (505)
+|.+.. +|..+..+++|+.|++++|.+..+|..+
T Consensus 200 ~N~l~~--------~~~~~~~l~~L~~L~Ls~N~l~~lp~~l 233 (487)
T 3oja_A 200 SNKLAF--------MGPEFQSAAGVTWISLRNNKLVLIEKAL 233 (487)
T ss_dssp SSCCCE--------ECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred CCCCCC--------CCHhHcCCCCccEEEecCCcCcccchhh
Confidence 998843 3445889999999999999998877653
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=159.87 Aligned_cols=197 Identities=15% Similarity=0.136 Sum_probs=103.7
Q ss_pred CCCccEEEEeCCcCcc-Ccccc--cCCCCCCeeEeeccCCCC--c----ccccCCCCCcEEEccCCCCcccc-hhhhCCC
Q 037920 121 MMQVRVINLTNINLMS-LPSSL--GLLSNLRTLSLDNCKLLD--I----TVVRDLKKLEILCLRGSNIKMLP-IEVSELA 190 (505)
Q Consensus 121 l~~L~~L~l~~~~~~~-l~~~l--~~l~~L~~L~L~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~ 190 (505)
+++|++|++++|.+.. .|..+ ..+++|++|++++|.+.. + ..+..+++|++|++++|+++.++ ..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3456666666666554 34444 556666666666666554 1 22335666666666666665553 3455666
Q ss_pred CCCEEeeeCCCCCCc--cCh-hhhcCCCCccEEEeeCCCCCCchhhhhccccc-cccCCCCcCEEEeecccCCCC-CCCC
Q 037920 191 RLRLLGLRDCRELEV--IPA-NVLSNLSHLEELYIGYNSFGKWEVEMEGVKNA-SLHELKHLTSLELHIKDVNTL-PRGL 265 (505)
Q Consensus 191 ~L~~L~l~~~~~~~~--~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~l-~~~~ 265 (505)
+|++|++++|...+. ++. ..++.+++|++|++++|.++..+. .+. .+..+++|+.|++++|.+... |..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-----VCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-----HHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-----HHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 666666666432221 111 112455666666666665543211 111 134556666666666666543 4333
Q ss_pred C-C---CCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccE
Q 037920 266 F-F---PKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKH 341 (505)
Q Consensus 266 ~-~---~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~ 341 (505)
. + ++|+.|+++.+... ..+..+ +++|+.|++++| .++.+|. + ..+++|+.
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~-----------------~lp~~~---~~~L~~L~Ls~N---~l~~~~~-~--~~l~~L~~ 298 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLE-----------------QVPKGL---PAKLRVLDLSSN---RLNRAPQ-P--DELPEVDN 298 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCC-----------------SCCSCC---CSCCSCEECCSC---CCCSCCC-T--TSCCCCSC
T ss_pred HhccCcCcCCEEECCCCCCC-----------------chhhhh---cCCCCEEECCCC---cCCCCch-h--hhCCCccE
Confidence 2 2 45555554321100 111111 367888888887 3334433 2 56788888
Q ss_pred EEEeCCC
Q 037920 342 LHIWNHP 348 (505)
Q Consensus 342 L~l~~~~ 348 (505)
|++++|+
T Consensus 299 L~L~~N~ 305 (310)
T 4glp_A 299 LTLDGNP 305 (310)
T ss_dssp EECSSTT
T ss_pred EECcCCC
Confidence 8888876
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=1.6e-17 Score=161.14 Aligned_cols=128 Identities=17% Similarity=0.184 Sum_probs=79.8
Q ss_pred CCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC---cccccCCCCCcEEEccCCCCc-ccchhhhCCCCCCEEee
Q 037920 122 MQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD---ITVVRDLKKLEILCLRGSNIK-MLPIEVSELARLRLLGL 197 (505)
Q Consensus 122 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l 197 (505)
++++.|+++++.+...+..+..+++|++|++++|.+.. +..+..+++|++|++++|.++ ..+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 66777777777766655556667777777777776654 355666777777777777665 34556666777777777
Q ss_pred eCCCCCCc--cChhhhcCCCCccEEEeeCC-CCCCchhhhhccccccccCCC-CcCEEEeecc
Q 037920 198 RDCRELEV--IPANVLSNLSHLEELYIGYN-SFGKWEVEMEGVKNASLHELK-HLTSLELHIK 256 (505)
Q Consensus 198 ~~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~ 256 (505)
++|..++. ++.. +..+++|++|++++| .+.+ ..++..+..++ +|+.|++++|
T Consensus 150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~------~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 150 SGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE------KHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH------HHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh------HHHHHHHHhcccCCCEEEeCCC
Confidence 77644442 3333 566677777777766 5531 12334455666 6666666655
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2.6e-16 Score=149.01 Aligned_cols=183 Identities=22% Similarity=0.243 Sum_probs=153.7
Q ss_pred EEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCC
Q 037920 78 IVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKL 157 (505)
Q Consensus 78 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l 157 (505)
+.+..+.+..+.....+++|+.|++ .++.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus 29 ~~l~~~~~~~~~~~~~l~~L~~L~l---~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAVTQNELNSIDQIIA---NNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEECHHHHHTCCEEEC---TTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccccchhhcCcccEEEc---cCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC
Confidence 3444455555444557899999999 6666677765 6889999999999999999877 99999999999999999
Q ss_pred CCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhcc
Q 037920 158 LDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGV 237 (505)
Q Consensus 158 ~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 237 (505)
..++.++.+++|++|++++|+++.++ .+..+++|++|++++ +.+..++. ++.+++|++|++++|.+....
T Consensus 103 ~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~------ 172 (291)
T 1h6t_A 103 KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISDIV------ 172 (291)
T ss_dssp CCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCCCG------
T ss_pred CCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcchh--hccCCCCCEEEccCCccccch------
Confidence 99777999999999999999999884 789999999999999 45666643 899999999999999885432
Q ss_pred ccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcc
Q 037920 238 KNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGG 279 (505)
Q Consensus 238 ~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~ 279 (505)
. +..+++|+.|++++|.+..++....+++|+.|++..+.
T Consensus 173 --~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 173 --P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp --G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred --h-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 2 88999999999999999988764459999999997654
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=3.4e-17 Score=158.80 Aligned_cols=226 Identities=18% Similarity=0.151 Sum_probs=156.7
Q ss_pred CCccEEEEeCCcCccCcccccCC--CCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcc--cchhhhCCCCCCEEe
Q 037920 122 MQVRVINLTNINLMSLPSSLGLL--SNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKM--LPIEVSELARLRLLG 196 (505)
Q Consensus 122 ~~L~~L~l~~~~~~~l~~~l~~l--~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~ 196 (505)
..++.++++++.+. +..+..+ +++++|++.+|.+.+ +..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 45788888888776 4556666 889999999999888 6667889999999999998763 677888999999999
Q ss_pred eeCCCCCCccChhhhcCCCCccEEEeeCC-CCCCchhhhhccccccccCCCCcCEEEeecc-cCCCCCCCCCCCCCcEEE
Q 037920 197 LRDCRELEVIPANVLSNLSHLEELYIGYN-SFGKWEVEMEGVKNASLHELKHLTSLELHIK-DVNTLPRGLFFPKLQRYK 274 (505)
Q Consensus 197 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~l~~~~~~~~L~~L~ 274 (505)
+++|......+.. ++.+++|++|++++| .+.+ ..++..+..+++|+.|++++| .+...
T Consensus 125 L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~------~~l~~~~~~~~~L~~L~l~~~~~l~~~------------- 184 (336)
T 2ast_B 125 LEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSE------FALQTLLSSCSRLDELNLSWCFDFTEK------------- 184 (336)
T ss_dssp CTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCH------HHHHHHHHHCTTCCEEECCCCTTCCHH-------------
T ss_pred CcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCH------HHHHHHHhcCCCCCEEcCCCCCCcChH-------------
Confidence 9997543345554 788999999999988 4531 134556778899999999887 64320
Q ss_pred EEEcceeecccccceEEecCCCCccchhhHHHHhc-ceeEEeecCCCC-CCcchhhhhhhccCCCCccEEEEeCCCCCCc
Q 037920 275 IHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQ-GIEDLGLSKLPE-QDVDYFVNELAKVGPSQLKHLHIWNHPPNPA 352 (505)
Q Consensus 275 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~-~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~ 352 (505)
.. ......++ +|+.|++++|.. -....++..+ ..+++|++|++++|..++.
T Consensus 185 ------------------------~~-~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 185 ------------------------HV-QVAVAHVSETITQLNLSGYRKNLQKSDLSTLV--RRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp ------------------------HH-HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--HHCTTCSEEECTTCTTCCG
T ss_pred ------------------------HH-HHHHHhcccCCCEEEeCCCcccCCHHHHHHHH--hhCCCCCEEeCCCCCcCCH
Confidence 01 11233367 888888888710 1114455555 5678888888888763322
Q ss_pred cccccccchhcchhhhhhhhcccccccccccccccccccccccc-ccccccccceeeccCccccccccccEEEEccc
Q 037920 353 ESKRREESTDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSI-NVERIWQSHVAVMSCVSNNTFVRLQRIEIKNC 428 (505)
Q Consensus 353 ~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c 428 (505)
..+ .....+++|++|++++| .+..... ..+..+++|++|++++|
T Consensus 238 ~~~------------------------~~l~~l~~L~~L~l~~~~~~~~~~~--------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 238 DCF------------------------QEFFQLNYLQHLSLSRCYDIIPETL--------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGG------------------------GGGGGCTTCCEEECTTCTTCCGGGG--------GGGGGCTTCCEEECTTS
T ss_pred HHH------------------------HHHhCCCCCCEeeCCCCCCCCHHHH--------HHHhcCCCCCEEeccCc
Confidence 211 11235688888888888 4433211 01567888888888888
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=2.4e-16 Score=163.64 Aligned_cols=178 Identities=24% Similarity=0.351 Sum_probs=153.4
Q ss_pred CcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCC
Q 037920 67 SDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSN 146 (505)
Q Consensus 67 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~ 146 (505)
.....+++++.|++++|.+..++....+++|+.|++ ..+.+..++. +..+++|+.|++++|.+..+| .+..+++
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L---s~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~ 110 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL---NGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKK 110 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEEC---TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTT
T ss_pred cchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEe---eCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCC
Confidence 345678899999999999999988889999999999 6666666766 689999999999999999876 6899999
Q ss_pred CCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCC
Q 037920 147 LRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS 226 (505)
Q Consensus 147 L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 226 (505)
|++|+|++|.+..++.+..+++|+.|++++|.++.+ ..+..+++|+.|++++| .+..++. +..+++|+.|++++|.
T Consensus 111 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 111 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp CCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCC
Confidence 999999999999987899999999999999999988 57899999999999995 5555555 7899999999999998
Q ss_pred CCCchhhhhccccccccCCCCcCEEEeecccCCCCCC
Q 037920 227 FGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPR 263 (505)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 263 (505)
+... ..+..+++|+.|++++|.+...|.
T Consensus 187 i~~l---------~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 187 ISDL---------RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCBC---------GGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCC---------hHHccCCCCCEEEccCCcCcCCcc
Confidence 8543 248889999999999998765554
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=1.6e-15 Score=147.72 Aligned_cols=239 Identities=15% Similarity=0.145 Sum_probs=157.8
Q ss_pred cEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCc-ccch-hhhCCCCCCEEeeeCC
Q 037920 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIK-MLPI-EVSELARLRLLGLRDC 200 (505)
Q Consensus 125 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~-~lp~-~i~~l~~L~~L~l~~~ 200 (505)
++++.+++.++++|..+ .+++++|+|++|.++. + ..+..+++|++|++++|++. .+|. .+.++++|+++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56788888888888765 3678888888888877 4 45778888888888888764 3443 4567777776655555
Q ss_pred CCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeec-ccCCCCCCCCCCCCCcEEEEEEcc
Q 037920 201 RELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHI-KDVNTLPRGLFFPKLQRYKIHIGG 279 (505)
Q Consensus 201 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~l~~~~~~~~L~~L~~~~~~ 279 (505)
+.+..++.+.+..+++|++|++++|.+...+ +..+....++..+++.. +.+..++...
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-------~~~~~~~~~l~~l~l~~~~~i~~l~~~~-------------- 148 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLP-------DVHKIHSLQKVLLDIQDNINIHTIERNS-------------- 148 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCC-------CCTTCCBSSCEEEEEESCTTCCEECTTS--------------
T ss_pred CcccccCchhhhhccccccccccccccccCC-------chhhcccchhhhhhhccccccccccccc--------------
Confidence 6677776655677778888888777764322 23344445566666653 3444443321
Q ss_pred eeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcccccccc
Q 037920 280 YYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREE 359 (505)
Q Consensus 280 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~ 359 (505)
+......++.|++++| .++.++... -...+|+++.+.++..+. .+.
T Consensus 149 ------------------------f~~~~~~l~~L~L~~N---~i~~i~~~~--f~~~~L~~l~l~~~n~l~-----~i~ 194 (350)
T 4ay9_X 149 ------------------------FVGLSFESVILWLNKN---GIQEIHNSA--FNGTQLDELNLSDNNNLE-----ELP 194 (350)
T ss_dssp ------------------------STTSBSSCEEEECCSS---CCCEECTTS--STTEEEEEEECTTCTTCC-----CCC
T ss_pred ------------------------hhhcchhhhhhccccc---cccCCChhh--ccccchhHHhhccCCccc-----CCC
Confidence 1111346788899887 566777665 345678888887655221 000
Q ss_pred chhcchhhhhhhhccccccccccccccccccccccccccccccccceeeccCccccccccccEEEEccccccccceeccc
Q 037920 360 STDVMQSHEIILKVNVNALFVEKVTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVEN 439 (505)
Q Consensus 360 l~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~ 439 (505)
.. ....+++|+.|++++|+++.++. ..+.+|++|.+.++..++.++.
T Consensus 195 ----------------~~---~f~~l~~L~~LdLs~N~l~~lp~-----------~~~~~L~~L~~l~~~~l~~lP~--- 241 (350)
T 4ay9_X 195 ----------------ND---VFHGASGPVILDISRTRIHSLPS-----------YGLENLKKLRARSTYNLKKLPT--- 241 (350)
T ss_dssp ----------------TT---TTTTEECCSEEECTTSCCCCCCS-----------SSCTTCCEEECTTCTTCCCCCC---
T ss_pred ----------------HH---HhccCcccchhhcCCCCcCccCh-----------hhhccchHhhhccCCCcCcCCC---
Confidence 11 11357889999999999888864 3477888888888888887732
Q ss_pred ccccccccccccccccccccC
Q 037920 440 QEERKNSIVIFPQLQYLKMDD 460 (505)
Q Consensus 440 ~~~~~~~~~~~p~L~~L~l~~ 460 (505)
...+++|+.+++.+
T Consensus 242 -------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 -------LEKLVALMEASLTY 255 (350)
T ss_dssp -------TTTCCSCCEEECSC
T ss_pred -------chhCcChhhCcCCC
Confidence 34568888888754
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=6.5e-18 Score=167.17 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=81.5
Q ss_pred hCCCCccEEEEeCCcCcc-----CcccccCCCCCCeeEeeccCCCC-----ccc-------ccCCCCCcEEEccCCCCcc
Q 037920 119 ERMMQVRVINLTNINLMS-----LPSSLGLLSNLRTLSLDNCKLLD-----ITV-------VRDLKKLEILCLRGSNIKM 181 (505)
Q Consensus 119 ~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~l~~-----~~~-------i~~l~~L~~L~l~~~~l~~ 181 (505)
..+++|+.|++++|.+.. ++..+..+++|++|++++|.+.. |.. +..+++|++|++++|.++.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 566777777777776654 23345567777777777764432 222 2567777777777777664
Q ss_pred -----cchhhhCCCCCCEEeeeCCCCCCccChhh----hcCC---------CCccEEEeeCCCCCCchhhhhcccccccc
Q 037920 182 -----LPIEVSELARLRLLGLRDCRELEVIPANV----LSNL---------SHLEELYIGYNSFGKWEVEMEGVKNASLH 243 (505)
Q Consensus 182 -----lp~~i~~l~~L~~L~l~~~~~~~~~~~~~----~~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 243 (505)
+|..+.++++|++|++++|. ++...... +..+ ++|++|++++|.+..... ..+...+.
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~~l~ 184 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM---KEWAKTFQ 184 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH---HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH---HHHHHHHH
Confidence 56667777777777777743 22211111 2223 677777777777642111 11223556
Q ss_pred CCCCcCEEEeecccCC
Q 037920 244 ELKHLTSLELHIKDVN 259 (505)
Q Consensus 244 ~l~~L~~L~l~~~~~~ 259 (505)
.+++|+.|++++|.+.
T Consensus 185 ~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIR 200 (386)
T ss_dssp HCTTCCEEECCSSCCC
T ss_pred hCCCcCEEECcCCCCC
Confidence 6777777777777654
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=5.8e-17 Score=158.79 Aligned_cols=138 Identities=16% Similarity=0.168 Sum_probs=72.1
Q ss_pred HhCCCCccEEEEeCCcCccCc-----ccccCCC-CCCeeEeeccCCCC--cccccCC-----CCCcEEEccCCCCcccch
Q 037920 118 FERMMQVRVINLTNINLMSLP-----SSLGLLS-NLRTLSLDNCKLLD--ITVVRDL-----KKLEILCLRGSNIKMLPI 184 (505)
Q Consensus 118 ~~~l~~L~~L~l~~~~~~~l~-----~~l~~l~-~L~~L~L~~~~l~~--~~~i~~l-----~~L~~L~l~~~~l~~lp~ 184 (505)
+...++|++|++++|.++..+ ..+..++ +|++|++++|.+.. +..++.+ ++|++|++++|.++..+.
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 344444666666666665543 3455555 66666666666554 3334332 666666666666654322
Q ss_pred h-----hhCC-CCCCEEeeeCCCCCCccChhhh----cC-CCCccEEEeeCCCCCCchhhhhccccccccCCC-CcCEEE
Q 037920 185 E-----VSEL-ARLRLLGLRDCRELEVIPANVL----SN-LSHLEELYIGYNSFGKWEVEMEGVKNASLHELK-HLTSLE 252 (505)
Q Consensus 185 ~-----i~~l-~~L~~L~l~~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~ 252 (505)
. +..+ ++|++|++++| .++..+...+ .. .++|++|++++|.+.+... ..++..+..++ +|+.|+
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS---DELIQILAAIPANVNSLN 173 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH---HHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH---HHHHHHHhcCCccccEee
Confidence 1 3334 56666666663 3344333212 22 2466666666665543211 12333444444 666666
Q ss_pred eecccCC
Q 037920 253 LHIKDVN 259 (505)
Q Consensus 253 l~~~~~~ 259 (505)
+++|.+.
T Consensus 174 Ls~n~l~ 180 (362)
T 3goz_A 174 LRGNNLA 180 (362)
T ss_dssp CTTSCGG
T ss_pred ecCCCCc
Confidence 6666554
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=2.3e-15 Score=146.68 Aligned_cols=225 Identities=15% Similarity=0.115 Sum_probs=143.6
Q ss_pred CCCCCcccccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccE-EEEeCCcCccC-c
Q 037920 63 YREWSDESAIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRV-INLTNINLMSL-P 138 (505)
Q Consensus 63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~~~~l-~ 138 (505)
++.++. ..++++++|++++|+++.++.. .++++|++|++ +++...+.++...|.++++++. +.+.+|.++.+ |
T Consensus 21 Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L--s~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 21 VTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI--SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp CCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEE--ECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEEC--cCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 444443 2456778888888888777653 37778888888 4444456666666777777654 55566777775 3
Q ss_pred ccccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCC-CCcccch-hhhCC-CCCCEEeeeCCCCCCccChhhhcC
Q 037920 139 SSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGS-NIKMLPI-EVSEL-ARLRLLGLRDCRELEVIPANVLSN 213 (505)
Q Consensus 139 ~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~ 213 (505)
..+..+++|++|++++|.+.. + ..+....++..|++.++ +++.++. .+..+ ..++.|++++ +.++.++.. +..
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~-~f~ 175 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS-AFN 175 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-SST
T ss_pred hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh-hcc
Confidence 456777888888888877776 3 34445566777777653 5666653 34444 3577777777 566677765 455
Q ss_pred CCCccEEEeeCCCCCCchhhhhcccc-ccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEe
Q 037920 214 LSHLEELYIGYNSFGKWEVEMEGVKN-ASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKI 292 (505)
Q Consensus 214 l~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l 292 (505)
..+|+++++.++.. .+.+| ..+..+++|+.|++++|.+..+|...
T Consensus 176 ~~~L~~l~l~~~n~-------l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--------------------------- 221 (350)
T 4ay9_X 176 GTQLDELNLSDNNN-------LEELPNDVFHGASGPVILDISRTRIHSLPSYG--------------------------- 221 (350)
T ss_dssp TEEEEEEECTTCTT-------CCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---------------------------
T ss_pred ccchhHHhhccCCc-------ccCCCHHHhccCcccchhhcCCCCcCccChhh---------------------------
Confidence 66777777765332 12233 34677778888888888777777643
Q ss_pred cCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeC
Q 037920 293 CPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWN 346 (505)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~ 346 (505)
+.+|+.|.+.++ ...+.+|. + ..+++|+.+++.+
T Consensus 222 ---------------~~~L~~L~~l~~--~~l~~lP~-l--~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 222 ---------------LENLKKLRARST--YNLKKLPT-L--EKLVALMEASLTY 255 (350)
T ss_dssp ---------------CTTCCEEECTTC--TTCCCCCC-T--TTCCSCCEEECSC
T ss_pred ---------------hccchHhhhccC--CCcCcCCC-c--hhCcChhhCcCCC
Confidence 345555555555 45566663 3 5677777777755
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=8.8e-16 Score=136.64 Aligned_cols=149 Identities=17% Similarity=0.216 Sum_probs=96.6
Q ss_pred cccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc-CcccccCCCCCC
Q 037920 70 SAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS-LPSSLGLLSNLR 148 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~~L~ 148 (505)
..+++++++++++|.+..++....+++|++|++ .++....++. +..+++|++|++++|.++. .|..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l---~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTI---NNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEE---ESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEc---cCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 456778888888887777775557777777777 3334444432 4667777777777777665 556666777777
Q ss_pred eeEeeccCCCC--cccccCCCCCcEEEccCCC-CcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCC
Q 037920 149 TLSLDNCKLLD--ITVVRDLKKLEILCLRGSN-IKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYN 225 (505)
Q Consensus 149 ~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 225 (505)
+|++++|.+.. +..++.+++|++|++++|. ++.+| .+..+++|++|++++ +.+..++. +..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCc
Confidence 77777777665 5666677777777777765 66665 566667777777766 34444542 566666666666666
Q ss_pred CC
Q 037920 226 SF 227 (505)
Q Consensus 226 ~~ 227 (505)
.+
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 54
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=6.3e-17 Score=160.03 Aligned_cols=236 Identities=14% Similarity=0.099 Sum_probs=156.3
Q ss_pred cccCCCcEEEecCCCCccC-----C-CCCCCCCccEEEeeecCC--CC-ccccChhH------HhCCCCccEEEEeCCcC
Q 037920 70 SAIKLYTSIVLHDIRTNLL-----P-EVVESPQLKLLFICADQE--SS-SLTIPNKF------FERMMQVRVINLTNINL 134 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~~l-----~-~~~~~~~L~~L~l~~~~~--~~-~~~~~~~~------~~~l~~L~~L~l~~~~~ 134 (505)
..++++++|++++|.+... . ....+++|++|++ .++ +. .+.+|..+ +..+++|++|++++|.+
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L--s~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF--SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEEC--CSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeC--cccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 3467788899988887432 1 1336888888888 332 11 22334433 36788888888888888
Q ss_pred cc-----CcccccCCCCCCeeEeeccCCCC--ccc----ccCC---------CCCcEEEccCCCCc--ccc---hhhhCC
Q 037920 135 MS-----LPSSLGLLSNLRTLSLDNCKLLD--ITV----VRDL---------KKLEILCLRGSNIK--MLP---IEVSEL 189 (505)
Q Consensus 135 ~~-----l~~~l~~l~~L~~L~L~~~~l~~--~~~----i~~l---------~~L~~L~l~~~~l~--~lp---~~i~~l 189 (505)
+. +|..+..+++|++|++++|.+.. +.. +..+ ++|++|++++|+++ .+| ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 76 66678888888888888888764 233 3333 78888888888876 334 466778
Q ss_pred CCCCEEeeeCCCCCCc-----cChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC
Q 037920 190 ARLRLLGLRDCRELEV-----IPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG 264 (505)
Q Consensus 190 ~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 264 (505)
++|++|++++| .+.. +....+..+++|++|++++|.+.... .+.++..+..+++|+.|++++|.+.....
T Consensus 187 ~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~~~~L~~L~L~~n~i~~~~~- 261 (386)
T 2ca6_A 187 RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLRELGLNDCLLSARGA- 261 (386)
T ss_dssp TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCCEEECTTCCCCHHHH-
T ss_pred CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHHHHHHHccCCCcCEEECCCCCCchhhH-
Confidence 88888888885 3331 22212678888888888888774321 14556677888888888888887543110
Q ss_pred CCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHH-HHhcceeEEeecCCCCCCcc----hhhhhhhccCCCCc
Q 037920 265 LFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLI-VQLQGIEDLGLSKLPEQDVD----YFVNELAKVGPSQL 339 (505)
Q Consensus 265 ~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~----~~~~~l~~~~l~~L 339 (505)
...+.++. ..+++|+.|++++| .... .+|..+. ..+++|
T Consensus 262 ---------------------------------~~l~~~l~~~~~~~L~~L~L~~n--~i~~~g~~~l~~~l~-~~l~~L 305 (386)
T 2ca6_A 262 ---------------------------------AAVVDAFSKLENIGLQTLRLQYN--EIELDAVRTLKTVID-EKMPDL 305 (386)
T ss_dssp ---------------------------------HHHHHHHHTCSSCCCCEEECCSS--CCBHHHHHHHHHHHH-HHCTTC
T ss_pred ---------------------------------HHHHHHHhhccCCCeEEEECcCC--cCCHHHHHHHHHHHH-hcCCCc
Confidence 00111111 11678999999998 3333 3676652 347999
Q ss_pred cEEEEeCCC
Q 037920 340 KHLHIWNHP 348 (505)
Q Consensus 340 ~~L~l~~~~ 348 (505)
++|++++|.
T Consensus 306 ~~L~l~~N~ 314 (386)
T 2ca6_A 306 LFLELNGNR 314 (386)
T ss_dssp CEEECTTSB
T ss_pred eEEEccCCc
Confidence 999999986
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=6.7e-16 Score=147.83 Aligned_cols=193 Identities=13% Similarity=0.155 Sum_probs=141.6
Q ss_pred cCCCcEEEecCCCCccC-CCC---CCCCCccEEEeeecCCCCccccC---hhHHhCCCCccEEEEeCCcCccCc-ccccC
Q 037920 72 IKLYTSIVLHDIRTNLL-PEV---VESPQLKLLFICADQESSSLTIP---NKFFERMMQVRVINLTNINLMSLP-SSLGL 143 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l-~~~---~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~ 143 (505)
.+++++|++++|.+... +.. ..+++|++|++ +++......+ ...+..+++|++|++++|.+..++ ..+..
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~L--s~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRL--RNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEE--ESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEe--ecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 45699999999988543 333 57889999999 4444333322 222357899999999999998755 57888
Q ss_pred CCCCCeeEeeccCCCC----c--ccccCCCCCcEEEccCCCCcccchh----hhCCCCCCEEeeeCCCCCCccChhhhcC
Q 037920 144 LSNLRTLSLDNCKLLD----I--TVVRDLKKLEILCLRGSNIKMLPIE----VSELARLRLLGLRDCRELEVIPANVLSN 213 (505)
Q Consensus 144 l~~L~~L~L~~~~l~~----~--~~i~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 213 (505)
+++|++|++++|.+.+ + ..++.+++|++|++++|+++.++.. +..+++|++|++++|......|.. +..
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~ 246 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APR 246 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHh
Confidence 9999999999998654 1 3346888999999999998876542 577899999999985433333554 455
Q ss_pred C---CCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEE
Q 037920 214 L---SHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHI 277 (505)
Q Consensus 214 l---~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~ 277 (505)
+ ++|++|++++|.+.. +|..+. ++|+.|++++|.+..+|....+++|+.|++..
T Consensus 247 ~~~~~~L~~L~Ls~N~l~~--------lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLEQ--------VPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDG 303 (310)
T ss_dssp CCCCTTCCCEECCSSCCCS--------CCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSS
T ss_pred ccCcCcCCEEECCCCCCCc--------hhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcC
Confidence 5 689999999998843 344443 78999999999998876644488888888753
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.1e-15 Score=137.28 Aligned_cols=170 Identities=22% Similarity=0.319 Sum_probs=119.4
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc-ccCCCCCCeeEeec
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSNLRTLSLDN 154 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~~ 154 (505)
+.++.+++.+..+|.. -.++|+.|++ .++.+..++...|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDL---ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEEC---CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEc---CCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 4566666766666643 3457888888 55555566666667788888888888888776653 57788888888888
Q ss_pred cCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCch
Q 037920 155 CKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWE 231 (505)
Q Consensus 155 ~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 231 (505)
|.+.. + ..++.+++|++|++++|+++.++.. +.++++|++|++++ +.+..++...+..+++|++|++++|.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~---- 160 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW---- 160 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCe----
Confidence 88777 3 4467788888888888888777654 57788888888887 455566655467788888888887754
Q ss_pred hhhhccccccccCCCCcCEEEeecccCC-CCCCC
Q 037920 232 VEMEGVKNASLHELKHLTSLELHIKDVN-TLPRG 264 (505)
Q Consensus 232 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~ 264 (505)
.+.+++|+.|+++.|.+. .+|.+
T Consensus 161 ----------~~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 161 ----------DCTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ----------CCCTTTTHHHHHHHHHCTTTBBCT
T ss_pred ----------ecCCCCHHHHHHHHHhCCceeecc
Confidence 245566777777766654 45554
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=3.5e-15 Score=138.15 Aligned_cols=162 Identities=21% Similarity=0.286 Sum_probs=137.7
Q ss_pred CCCCCcccccCCCcEEEecCCCCccCCC--CCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-
Q 037920 63 YREWSDESAIKLYTSIVLHDIRTNLLPE--VVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS- 139 (505)
Q Consensus 63 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~- 139 (505)
+..++. ...+++++|++++|.+..++. ...+++|++|++ .++.+..++...|..+++|++|++++|.++.+|.
T Consensus 26 l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 26 LDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNL---DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC---TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred ccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEEC---CCCcCCccCHhHhccCCcCCEEECCCCcccccChh
Confidence 444443 345789999999999987765 348999999999 6666777777777999999999999999999764
Q ss_pred cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCC
Q 037920 140 SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSH 216 (505)
Q Consensus 140 ~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 216 (505)
.+..+++|++|++++|.+.. + ..++.+++|++|++++|+++.+|. .+..+++|++|++++ +.+..++...+..+++
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGK 180 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTT
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCC
Confidence 57899999999999999998 4 457899999999999999999876 688999999999999 5667777655889999
Q ss_pred ccEEEeeCCCCCC
Q 037920 217 LEELYIGYNSFGK 229 (505)
Q Consensus 217 L~~L~l~~~~~~~ 229 (505)
|+.|++++|.+..
T Consensus 181 L~~L~l~~N~~~c 193 (251)
T 3m19_A 181 LQTITLFGNQFDC 193 (251)
T ss_dssp CCEEECCSCCBCT
T ss_pred CCEEEeeCCceeC
Confidence 9999999998754
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=1.2e-15 Score=135.73 Aligned_cols=150 Identities=16% Similarity=0.265 Sum_probs=117.1
Q ss_pred CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC--cccccCCCCCc
Q 037920 93 ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLE 170 (505)
Q Consensus 93 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~ 170 (505)
.+++|+.|++ .++.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++|.+.. +..++.+++|+
T Consensus 42 ~l~~L~~L~l---~~n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITL---ANINVTDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEE---ESSCCSCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEec---cCCCccChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 6778888988 4455556663 578889999999988776664 67888899999999888876 68888889999
Q ss_pred EEEccCCCCcc-cchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcC
Q 037920 171 ILCLRGSNIKM-LPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLT 249 (505)
Q Consensus 171 ~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 249 (505)
+|++++|.++. .|..+..+++|++|++++|..++.++. +..+++|++|++++|.+.+. + .+..+++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~--------~-~l~~l~~L~ 184 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY--------R-GIEDFPKLN 184 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC--------T-TGGGCSSCC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh--------H-HhccCCCCC
Confidence 99999888875 467788888999999988655777763 78888899999988887543 2 477888888
Q ss_pred EEEeecccCC
Q 037920 250 SLELHIKDVN 259 (505)
Q Consensus 250 ~L~l~~~~~~ 259 (505)
.|++++|.+.
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 9988888764
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=3e-16 Score=146.31 Aligned_cols=171 Identities=19% Similarity=0.228 Sum_probs=111.4
Q ss_pred cCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeE
Q 037920 72 IKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLS 151 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~ 151 (505)
+.++..+++.++.+..++....+++|+.|++ .++.+..++. +..+++|++|++++|.++.++. +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l---~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNG---DNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEEC---TTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEEC---cCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 4445555566666666554456677777777 4445555552 4667777777777777777665 67777777777
Q ss_pred eeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCch
Q 037920 152 LDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWE 231 (505)
Q Consensus 152 L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 231 (505)
+++|.+..++.+.. ++|++|++++|+++.++ .+.++++|+.|++++ +.+..++. ++.+++|++|++++|.+...
T Consensus 92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCBC-
T ss_pred CCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcch-
Confidence 77777766333333 77777777777777664 467777777777777 44555543 67777777777777766432
Q ss_pred hhhhccccccccCCCCcCEEEeecccCCCCC
Q 037920 232 VEMEGVKNASLHELKHLTSLELHIKDVNTLP 262 (505)
Q Consensus 232 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 262 (505)
..+..+++|+.|++++|.+...|
T Consensus 166 --------~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 --------GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp --------TTSTTCCCCCEEEEEEEEEECCC
T ss_pred --------HHhccCCCCCEEeCCCCcccCCc
Confidence 34667777777777777665444
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=1.7e-15 Score=157.29 Aligned_cols=186 Identities=22% Similarity=0.228 Sum_probs=155.5
Q ss_pred CcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeec
Q 037920 75 YTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDN 154 (505)
Q Consensus 75 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~ 154 (505)
+..+.+..+.+..+.....+++|+.|.+ .++.+..++. +..+++|+.|++++|.+..+++ +..+++|++|+|++
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l---~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIA---NNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBC---TTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccchhcCCCCCEEEC---cCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 4444555555555555558899999999 6666777765 6899999999999999999877 89999999999999
Q ss_pred cCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhh
Q 037920 155 CKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEM 234 (505)
Q Consensus 155 ~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 234 (505)
|.+..++.++.+++|+.|++++|.++.++ .+..+++|+.|++++| .+..++. ++.+++|+.|++++|.+...
T Consensus 97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~~---- 168 (605)
T 1m9s_A 97 NKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI---- 168 (605)
T ss_dssp SCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCCC----
T ss_pred CCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCCc----
Confidence 99999778999999999999999999875 6899999999999994 5566643 89999999999999988542
Q ss_pred hccccccccCCCCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcc
Q 037920 235 EGVKNASLHELKHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGG 279 (505)
Q Consensus 235 ~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~ 279 (505)
.+ +..+++|+.|++++|.+..++....+++|+.|++..+.
T Consensus 169 ---~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 169 ---VP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ---GG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred ---hh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 23 88999999999999999988754459999999986543
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=2.1e-16 Score=154.74 Aligned_cols=227 Identities=15% Similarity=0.082 Sum_probs=143.5
Q ss_pred EEecCCCCcc-CCCCC-CCCCccEEEeeecCCCCccccCh----hHHhCCC-CccEEEEeCCcCccC-cccccCC-----
Q 037920 78 IVLHDIRTNL-LPEVV-ESPQLKLLFICADQESSSLTIPN----KFFERMM-QVRVINLTNINLMSL-PSSLGLL----- 144 (505)
Q Consensus 78 l~l~~~~~~~-l~~~~-~~~~L~~L~l~~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-~~~l~~l----- 144 (505)
..++.+.+.. ++... ..++|+.|++ +++.+...+. ..+..++ +|++|++++|.++.. +..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~L---s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDL---SLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEEC---TTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccccchHHHHHHHhCCCCceEEEc---cCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 4556666643 33333 3445888888 5555666654 5567788 899999999988764 4445543
Q ss_pred CCCCeeEeeccCCCC--ccc----ccCC-CCCcEEEccCCCCcccch-h----hhC-CCCCCEEeeeCCCCCCc-----c
Q 037920 145 SNLRTLSLDNCKLLD--ITV----VRDL-KKLEILCLRGSNIKMLPI-E----VSE-LARLRLLGLRDCRELEV-----I 206 (505)
Q Consensus 145 ~~L~~L~L~~~~l~~--~~~----i~~l-~~L~~L~l~~~~l~~lp~-~----i~~-l~~L~~L~l~~~~~~~~-----~ 206 (505)
++|++|++++|.+.. +.. +..+ ++|++|++++|.++..+. . +.. .++|++|++++| .++. +
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHH
Confidence 889999999998876 332 4445 789999999998876543 2 334 368999999884 4442 2
Q ss_pred ChhhhcCCC-CccEEEeeCCCCCCchhhhhccccccccCC-CCcCEEEeecccCCCCCCCCCCCCCcEEEEEEcceeecc
Q 037920 207 PANVLSNLS-HLEELYIGYNSFGKWEVEMEGVKNASLHEL-KHLTSLELHIKDVNTLPRGLFFPKLQRYKIHIGGYYYAG 284 (505)
Q Consensus 207 ~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~ 284 (505)
+.. +..++ +|++|++++|.+..... ..+...+... ++|+.|++++|.+....
T Consensus 159 ~~~-l~~~~~~L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~i~~~~---------------------- 212 (362)
T 3goz_A 159 IQI-LAAIPANVNSLNLRGNNLASKNC---AELAKFLASIPASVTSLDLSANLLGLKS---------------------- 212 (362)
T ss_dssp HHH-HHTSCTTCCEEECTTSCGGGSCH---HHHHHHHHTSCTTCCEEECTTSCGGGSC----------------------
T ss_pred HHH-HhcCCccccEeeecCCCCchhhH---HHHHHHHHhCCCCCCEEECCCCCCChhH----------------------
Confidence 232 45555 89999999888754321 1223345555 48999999888865411
Q ss_pred cccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCc--chhhhhhhccCCCCccEEEEeCCC
Q 037920 285 VWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDV--DYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 285 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
.......+....++|+.|++++|..... ..+...+ ..+++|+.|++++|.
T Consensus 213 ------------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~--~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 213 ------------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK--DSLKHLQTVYLDYDI 264 (362)
T ss_dssp ------------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT--TTTTTCSEEEEEHHH
T ss_pred ------------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH--hcCCCccEEEeccCC
Confidence 1112223333235788888888732221 2223333 567888888888875
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=8e-15 Score=133.65 Aligned_cols=149 Identities=21% Similarity=0.351 Sum_probs=115.9
Q ss_pred CcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEee
Q 037920 75 YTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLD 153 (505)
Q Consensus 75 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~ 153 (505)
.+.++.+++.+..+|... .++|+.|++ .++.+..++...|..+++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~L---s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYL---HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEEC---CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEc---CCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456888888888887643 378888888 5555666655556888888888888888888764 45788888888888
Q ss_pred ccCCCC-c-ccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCC
Q 037920 154 NCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFG 228 (505)
Q Consensus 154 ~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 228 (505)
+|.+.. + ..+..+++|++|++++|+++.+|..+..+++|++|++++ +.+..++...+..+++|+.|++.+|.+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 888887 3 446788888888888888888888888888888888888 5666776555777888888888877664
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=1.5e-14 Score=148.56 Aligned_cols=161 Identities=22% Similarity=0.373 Sum_probs=119.0
Q ss_pred CCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEe
Q 037920 73 KLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSL 152 (505)
Q Consensus 73 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L 152 (505)
.+++.|++++|.+..+|... .++|+.|++ .++.+..+| ..+++|++|++++|.++.+|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~L---s~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEI---TQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEEC---CSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEEC---cCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 37899999999988887644 478888888 555566777 347888888888888888877 554 8888888
Q ss_pred eccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchh
Q 037920 153 DNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEV 232 (505)
Q Consensus 153 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 232 (505)
++|.++.++. .+++|+.|++++|.++.+|. .+++|++|++++ +.+..+|. +. ++|+.|++++|.++.+
T Consensus 128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~~l-- 195 (571)
T 3cvr_A 128 DNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLESL-- 195 (571)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCSSC--
T ss_pred CCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCCch--
Confidence 8888888333 67888888888888888875 567888888888 45566776 44 7888888888877533
Q ss_pred hhhccccccccCCCCc-------CEEEeecccCCCCCCCC
Q 037920 233 EMEGVKNASLHELKHL-------TSLELHIKDVNTLPRGL 265 (505)
Q Consensus 233 ~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~l~~~~ 265 (505)
|. +.. +| +.|++++|.+..+|..+
T Consensus 196 ------p~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l 226 (571)
T 3cvr_A 196 ------PA-VPV--RNHHSEETEIFFRCRENRITHIPENI 226 (571)
T ss_dssp ------CC-CC----------CCEEEECCSSCCCCCCGGG
T ss_pred ------hh-HHH--hhhcccccceEEecCCCcceecCHHH
Confidence 22 322 44 88888888887777654
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=5.9e-15 Score=137.47 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=133.3
Q ss_pred CcccccCCCcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCC
Q 037920 67 SDESAIKLYTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSN 146 (505)
Q Consensus 67 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~ 146 (505)
.....++++++|++++|.+..++....+++|+.|++ .++.+..++. +..+++|++|++++|.++.+|.... ++
T Consensus 35 ~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L---~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~ 107 (263)
T 1xeu_A 35 VSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHL---SHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--AC 107 (263)
T ss_dssp ECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEEC---CSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SS
T ss_pred cchhhcCcCcEEECcCCCcccchHHhhCCCCCEEEC---CCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--Cc
Confidence 445678999999999999999997779999999999 6667777776 6899999999999999999876433 99
Q ss_pred CCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCC
Q 037920 147 LRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNS 226 (505)
Q Consensus 147 L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 226 (505)
|++|++++|.+.+++.++.+++|+.|++++|+++.++ .+..+++|+.|++++ +.+..++. +..+++|+.|++++|.
T Consensus 108 L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~~--l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTGG--LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBCTT--STTCCCCCEEEEEEEE
T ss_pred ccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcchHH--hccCCCCCEEeCCCCc
Confidence 9999999999999778999999999999999999986 789999999999999 55566633 8999999999999987
Q ss_pred CCC
Q 037920 227 FGK 229 (505)
Q Consensus 227 ~~~ 229 (505)
+..
T Consensus 184 ~~~ 186 (263)
T 1xeu_A 184 CVN 186 (263)
T ss_dssp EEC
T ss_pred ccC
Confidence 743
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=1.3e-14 Score=148.98 Aligned_cols=182 Identities=18% Similarity=0.224 Sum_probs=136.7
Q ss_pred CCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEE
Q 037920 95 PQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILC 173 (505)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~ 173 (505)
.+++.|++ .++.+..+|..+ +++|++|++++|.++.+| ..+++|++|++++|.++. |. ++. +|++|+
T Consensus 59 ~~L~~L~L---s~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQL---NRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEEC---CSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CCccEEEe---CCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 37889999 555566687755 378999999999999888 457899999999999888 45 555 899999
Q ss_pred ccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEe
Q 037920 174 LRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLEL 253 (505)
Q Consensus 174 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 253 (505)
+++|+++.+|. .+++|+.|++++ +.+..+|. .+++|++|++++|.+.. +|. +. ++|+.|++
T Consensus 127 Ls~N~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~----~l~~L~~L~Ls~N~L~~--------lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 127 VDNNQLTMLPE---LPALLEYINADN-NQLTMLPE----LPTSLEVLSVRNNQLTF--------LPE-LP--ESLEALDV 187 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSC--------CCC-CC--TTCCEEEC
T ss_pred CCCCcCCCCCC---cCccccEEeCCC-CccCcCCC----cCCCcCEEECCCCCCCC--------cch-hh--CCCCEEEC
Confidence 99999988886 678999999988 55666665 56889999999988743 444 44 88999999
Q ss_pred ecccCCCCCCCCCCCCCcEEEEEEcceeecccccceEEecCCCCccchhhHHHHhcceeEEeecCCCCCCcchhhhhhhc
Q 037920 254 HIKDVNTLPRGLFFPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLKDGLIVQLQGIEDLGLSKLPEQDVDYFVNELAK 333 (505)
Q Consensus 254 ~~~~~~~l~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 333 (505)
++|.+..+|. + ..+| ....+.|+.|++++| .++.+|..+
T Consensus 188 s~N~L~~lp~-~-~~~L----------------------------------~~~~~~L~~L~Ls~N---~l~~lp~~l-- 226 (571)
T 3cvr_A 188 STNLLESLPA-V-PVRN----------------------------------HHSEETEIFFRCREN---RITHIPENI-- 226 (571)
T ss_dssp CSSCCSSCCC-C-C------------------------------------------CCEEEECCSS---CCCCCCGGG--
T ss_pred cCCCCCchhh-H-HHhh----------------------------------hcccccceEEecCCC---cceecCHHH--
Confidence 9998887776 2 1111 111355688888887 556778777
Q ss_pred cCCCCccEEEEeCCC
Q 037920 334 VGPSQLKHLHIWNHP 348 (505)
Q Consensus 334 ~~l~~L~~L~l~~~~ 348 (505)
..+++|+.|++++|.
T Consensus 227 ~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 227 LSLDPTCTIILEDNP 241 (571)
T ss_dssp GGSCTTEEEECCSSS
T ss_pred hcCCCCCEEEeeCCc
Confidence 448888888888886
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=9.2e-15 Score=132.31 Aligned_cols=147 Identities=22% Similarity=0.346 Sum_probs=100.9
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeec
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDN 154 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~ 154 (505)
+.++.+++.+..+|.... ++++.|++ .++.+..++...|..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l---~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRL---EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEEC---CSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEEC---CCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 567777777777775432 67777777 55556666665567777777888777777764 56677777777777777
Q ss_pred cCCCC-c-ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920 155 CKLLD-I-TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 155 ~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
|.+.. + ..+..+++|++|++++|+++.+ |..+..+++|++|++++ +.+..++...+..+++|+.|++++|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 77777 3 3456677777777777777766 34566777777777777 445555554466677777777776655
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=4e-15 Score=133.57 Aligned_cols=160 Identities=23% Similarity=0.271 Sum_probs=135.8
Q ss_pred cccCCCcEEEecCCCCccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc-ccCCCC
Q 037920 70 SAIKLYTSIVLHDIRTNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSN 146 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~ 146 (505)
...+++++|++++|.+..++.. ..+++|++|++ .++.+..++...|..+++|++|++++|.++.+|.. +..+++
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYL---GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEEC---CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEEC---CCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 3467899999999999888763 38999999999 66677788888789999999999999999997764 689999
Q ss_pred CCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEee
Q 037920 147 LRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG 223 (505)
Q Consensus 147 L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 223 (505)
|++|++++|.+.. + ..+..+++|++|++++|+++.++.. +..+++|++|++++|.. .+.+++|+.|++.
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~ 173 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEW 173 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHHH
T ss_pred CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHHH
Confidence 9999999999988 4 4578999999999999999988764 78899999999999632 3567788999888
Q ss_pred CCCCCCchhhhhccccccccCCCC
Q 037920 224 YNSFGKWEVEMEGVKNASLHELKH 247 (505)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~l~~ 247 (505)
.|.+ .|.+|..++.++.
T Consensus 174 ~n~~-------~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 174 INKH-------SGVVRNSAGSVAP 190 (208)
T ss_dssp HHHC-------TTTBBCTTSSBCT
T ss_pred HHhC-------CceeeccCccccC
Confidence 8877 6778887777654
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=130.66 Aligned_cols=148 Identities=21% Similarity=0.339 Sum_probs=95.4
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCcccc-ChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEee
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTI-PNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLD 153 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~ 153 (505)
++++++++.++.+|... ...++.|++ .++.+..+ +..+|..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L---~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRL---NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEEC---CSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEc---CCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 47777877777776532 345667777 44444444 34445677777777777777776544 56777777777777
Q ss_pred ccCCCC-c-ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCC
Q 037920 154 NCKLLD-I-TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFG 228 (505)
Q Consensus 154 ~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 228 (505)
+|.+.. + ..++.+++|++|++++|+++.+ |..+..+++|++|++++ +.+..++...+..+++|+.|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 777766 2 4466777777777777777666 45566677777777766 4444443333666667777777666553
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=1.4e-14 Score=141.68 Aligned_cols=171 Identities=20% Similarity=0.284 Sum_probs=122.3
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHh-CCCCccEEEEeCCcCccCc-ccccCCCCCCeeEee
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFE-RMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLD 153 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~ 153 (505)
+.++++++.+..+|... ...++.|++ .++.+..++...|. .+++|++|++++|.++.++ ..+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~L---s~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDL---SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEEC---CSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEEC---CCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57888888887777543 345788888 55666667666666 7888888888888888765 457888888888888
Q ss_pred ccCCCC-c-ccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhh---cCCCCccEEEeeCCCC
Q 037920 154 NCKLLD-I-TVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVL---SNLSHLEELYIGYNSF 227 (505)
Q Consensus 154 ~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~ 227 (505)
+|.+.. + ..+..+++|++|++++|+++.+ |..+..+++|++|++++ +.+..+|...+ ..+++|+.|++++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 888777 3 4577888888888888888776 45677888888888887 56667776644 5678888888888877
Q ss_pred CCchhhhhccccccccCCCC--cCEEEeecccC
Q 037920 228 GKWEVEMEGVKNASLHELKH--LTSLELHIKDV 258 (505)
Q Consensus 228 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 258 (505)
..++. ..+..++. ++.|++++|.+
T Consensus 176 ~~l~~-------~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 KKLPL-------TDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCH-------HHHHHSCHHHHTTEECCSSCE
T ss_pred CccCH-------HHhhhccHhhcceEEecCCCc
Confidence 54432 34455555 36677776654
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=3.5e-14 Score=128.50 Aligned_cols=141 Identities=20% Similarity=0.338 Sum_probs=73.5
Q ss_pred CCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCccc
Q 037920 106 QESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKML 182 (505)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~l 182 (505)
.+..+..+|..+ .++|+.|++++|.++.++. .+..+++|++|++++|.+.. +..+..+++|++|++++|+++.+
T Consensus 19 ~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 19 RGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp TTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence 334444455432 2455666666666555443 45555666666666655555 34555556666666666655555
Q ss_pred chh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeeccc
Q 037920 183 PIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKD 257 (505)
Q Consensus 183 p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 257 (505)
|.. +..+++|++|++++ +.+..++...+..+++|++|++++|.+... .+..+..+++|+.|++++|.
T Consensus 96 ~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTI-------AKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC-------CTTTTTTCTTCCEEECCSSC
T ss_pred CHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEE-------CHHHHhCCCCCCEEEeCCCC
Confidence 433 34555566665555 334444333355555555555555555322 22334555555555555544
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=3.6e-14 Score=128.42 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=98.3
Q ss_pred cEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc--cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEE
Q 037920 98 KLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS--SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILC 173 (505)
Q Consensus 98 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~ 173 (505)
+++++ .++.+..+|..+ ...+++|++++|.++.++. .+..+++|++|++++|.+.. + ..++.+++|++|+
T Consensus 14 ~~l~~---s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDC---SNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEEC---CSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEeEe---CCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 46666 555556666543 3456777777777777532 36777777777777777777 3 4677777777777
Q ss_pred ccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEE
Q 037920 174 LRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE 252 (505)
Q Consensus 174 l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 252 (505)
+++|.++.++. .+..+++|++|++++ +.+..++...+..+++|++|++++|.+. +..|..+..+++|+.|+
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQIT-------TVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCC-------CBCTTTTTTCTTCCEEE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCC-------EECHHHhcCCCCCCEEE
Confidence 77777776654 367777777777777 4445554333677777777777777763 33345667777777777
Q ss_pred eecccC
Q 037920 253 LHIKDV 258 (505)
Q Consensus 253 l~~~~~ 258 (505)
+++|.+
T Consensus 160 L~~N~l 165 (220)
T 2v70_A 160 LLANPF 165 (220)
T ss_dssp CCSCCE
T ss_pred ecCcCC
Confidence 776664
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=3e-14 Score=123.19 Aligned_cols=140 Identities=24% Similarity=0.220 Sum_probs=99.8
Q ss_pred CCCCccEEEEeCCcCc--cCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcc-cchhhhCCCCCCEEe
Q 037920 120 RMMQVRVINLTNINLM--SLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKM-LPIEVSELARLRLLG 196 (505)
Q Consensus 120 ~l~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~ 196 (505)
..++|+.|++++|.++ .+|..+..+++|++|++++|.+..+..++.+++|++|++++|+++. +|..+.++++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3567888888888877 6777777788888888888877777777778888888888887776 566666688888888
Q ss_pred eeCCCCCCccCh-hhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCC
Q 037920 197 LRDCRELEVIPA-NVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRG 264 (505)
Q Consensus 197 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 264 (505)
+++| .+..++. ..+..+++|++|++++|.+...+. .....+..+++|+.|+++.|...++|.+
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLND----YRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH----HHHHHHHhCccCcEecCCCCChhhcccc
Confidence 8874 5555542 226778888888888877633210 0013577788888888888887776654
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=6.4e-14 Score=127.62 Aligned_cols=148 Identities=21% Similarity=0.291 Sum_probs=105.0
Q ss_pred ccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEE
Q 037920 97 LKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILC 173 (505)
Q Consensus 97 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~ 173 (505)
.+.++. .+.....+|..+ .++|++|++++|.++.+ |..+..+++|++|++++|.+.. + ..+..+++|++|+
T Consensus 21 ~~~v~c---~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 21 GTTVDC---RSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTEEEC---TTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEeEc---cCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 345555 555566676643 37788888888888775 5567778888888888888777 3 4567788888888
Q ss_pred ccCCCCcccchh-hhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEE
Q 037920 174 LRGSNIKMLPIE-VSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLE 252 (505)
Q Consensus 174 l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 252 (505)
+++|+++.+|.. +..+++|++|++++ +.+..+|.. +..+++|++|++++|.+..+ .+..+..+++|+.|+
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKSI-------PHGAFDRLSSLTHAY 165 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCCC-------CTTTTTTCTTCCEEE
T ss_pred CCCCcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCcc-------CHHHHhCCCCCCEEE
Confidence 888888777544 56778888888877 556677766 67778888888887777432 224567777788888
Q ss_pred eecccCC
Q 037920 253 LHIKDVN 259 (505)
Q Consensus 253 l~~~~~~ 259 (505)
+.+|.+.
T Consensus 166 l~~N~~~ 172 (229)
T 3e6j_A 166 LFGNPWD 172 (229)
T ss_dssp CTTSCBC
T ss_pred eeCCCcc
Confidence 8777654
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=3.6e-14 Score=138.76 Aligned_cols=163 Identities=21% Similarity=0.275 Sum_probs=137.0
Q ss_pred cCCCCCcccccCCCcEEEecCCCCccCCCCC---CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc
Q 037920 62 GYREWSDESAIKLYTSIVLHDIRTNLLPEVV---ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP 138 (505)
Q Consensus 62 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 138 (505)
+++.++. ...+.++.|++++|.+..++... .+++|+.|++ .++.+..++...|..+++|++|++++|.++.++
T Consensus 29 ~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L---~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 104 (361)
T 2xot_A 29 QLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL---SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD 104 (361)
T ss_dssp CCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEEC---CSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEEC---CCCcCCccChhhccCCCCCCEEECCCCcCCcCC
Confidence 3455543 45677999999999998876543 7899999999 677777888777899999999999999999876
Q ss_pred c-cccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccchhh----hCCCCCCEEeeeCCCCCCccChhhh
Q 037920 139 S-SLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPIEV----SELARLRLLGLRDCRELEVIPANVL 211 (505)
Q Consensus 139 ~-~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~l~~~~~~~~~~~~~~ 211 (505)
. .+..+++|++|+|++|.+.. +..+..+++|+.|++++|+++.+|..+ ..+++|+.|++++ +.+..++...+
T Consensus 105 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~ 183 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDL 183 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHH
T ss_pred HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHh
Confidence 5 68899999999999999988 578999999999999999999998765 5799999999999 67788887667
Q ss_pred cCCCC--ccEEEeeCCCCCC
Q 037920 212 SNLSH--LEELYIGYNSFGK 229 (505)
Q Consensus 212 ~~l~~--L~~L~l~~~~~~~ 229 (505)
..++. ++.|++.+|.+.-
T Consensus 184 ~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 184 QKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHSCHHHHTTEECCSSCEEC
T ss_pred hhccHhhcceEEecCCCccC
Confidence 88887 4889999987753
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=1.4e-16 Score=164.32 Aligned_cols=190 Identities=18% Similarity=0.191 Sum_probs=141.3
Q ss_pred cCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCC-------------ccccChhHHhCCCCccEEE-EeCCcCcc
Q 037920 72 IKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESS-------------SLTIPNKFFERMMQVRVIN-LTNINLMS 136 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 136 (505)
.+++++|++++|.++.+|... .+++|+.|++ +++. ....++..+..+++|+.|+ ++.+.+..
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l---~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhcc---ccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 456667777777777776544 7777777776 3331 1222333456677777777 45544333
Q ss_pred Ccc------cccC--CCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccCh
Q 037920 137 LPS------SLGL--LSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPA 208 (505)
Q Consensus 137 l~~------~l~~--l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 208 (505)
++. .+.. ...|++|++++|.+++++.++.+++|+.|++++|+++.+|..++++++|+.|++++ +.+..+|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp- 502 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-
Confidence 221 1111 13589999999999994449999999999999999999999999999999999999 5666788
Q ss_pred hhhcCCCCccEEEeeCCCCCCchhhhhccc-cccccCCCCcCEEEeecccCCCCCCCCC-----CCCCcEEE
Q 037920 209 NVLSNLSHLEELYIGYNSFGKWEVEMEGVK-NASLHELKHLTSLELHIKDVNTLPRGLF-----FPKLQRYK 274 (505)
Q Consensus 209 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~l~~~~~-----~~~L~~L~ 274 (505)
. ++.+++|++|++++|.+. +.. |..+..+++|+.|++++|.+..+|.... +++|+.|+
T Consensus 503 ~-l~~l~~L~~L~Ls~N~l~-------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 G-VANLPRLQELLLCNNRLQ-------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp G-GTTCSSCCEEECCSSCCC-------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred c-cCCCCCCcEEECCCCCCC-------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 4 899999999999999884 333 6789999999999999999988776553 67887764
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=2.1e-13 Score=117.84 Aligned_cols=107 Identities=24% Similarity=0.373 Sum_probs=53.3
Q ss_pred hCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccc--hhhhCCCCCCE
Q 037920 119 ERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLP--IEVSELARLRL 194 (505)
Q Consensus 119 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~ 194 (505)
..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. + ..++.+++|++|++++|.++.+| ..+..+++|++
T Consensus 46 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence 4445555555555555544 444555555555555555544 2 33333555555555555555543 34555555555
Q ss_pred EeeeCCCCCCccCh---hhhcCCCCccEEEeeCCCC
Q 037920 195 LGLRDCRELEVIPA---NVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 195 L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~ 227 (505)
|++++| .+..++. ..+..+++|++|++++|..
T Consensus 125 L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 125 LDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 555552 3333333 2245555555555555544
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=1.4e-13 Score=116.45 Aligned_cols=128 Identities=21% Similarity=0.187 Sum_probs=86.4
Q ss_pred CCCccEEEEeCCcCc--cCcccccCCCCCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcc-cchhhhCCCCCCEEee
Q 037920 121 MMQVRVINLTNINLM--SLPSSLGLLSNLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKM-LPIEVSELARLRLLGL 197 (505)
Q Consensus 121 l~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l 197 (505)
.++|+.|++++|.++ .+|..+..+++|++|++++|.+.....++.+++|++|++++|.++. +|..+..+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 466777777777777 5777777777777777777777766667777778888887777776 5666666777888877
Q ss_pred eCCCCCCccC--hhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEee
Q 037920 198 RDCRELEVIP--ANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH 254 (505)
Q Consensus 198 ~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 254 (505)
++| .+..++ .. ++.+++|++|++++|.+...+. .....+..+++|+.|+++
T Consensus 96 s~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGN-KIKDLSTIEP-LKKLENLKSLDLFNCEVTNLND----YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTS-CCCSHHHHGG-GGGCTTCCEEECTTCGGGGSTT----HHHHHHHHCTTCCEETTB
T ss_pred CCC-cCCChHHHHH-HhhCCCCCEEeCcCCcccchHH----HHHHHHHHCCCcccccCC
Confidence 773 445543 33 6777777777777776632210 001346667777777654
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=3.5e-14 Score=151.08 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=102.7
Q ss_pred cCCCcEEEecCCCCccCCCCC-CCCCccEEEeeec--CCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCC
Q 037920 72 IKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICAD--QESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLR 148 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~ 148 (505)
.+.++++.+.++.+...+... ...+|+.+.+.+. .++... ++...|..+.+|+.|++++|.+..+|..+..+++|+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 356888999888886655432 5555555554110 112222 455557899999999999999999999999999999
Q ss_pred eeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920 149 TLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 149 ~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
+|+|++|.+.. |..++.+++|++|+|++|+++.+|..++.+++|++|++++ +.++.+|.. ++.+++|+.|++++|.+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCCcc
Confidence 99999999998 7889999999999999999999999999999999999999 567889988 89999999999999998
Q ss_pred CCch
Q 037920 228 GKWE 231 (505)
Q Consensus 228 ~~~~ 231 (505)
....
T Consensus 329 ~~~~ 332 (727)
T 4b8c_D 329 EKQF 332 (727)
T ss_dssp CSHH
T ss_pred CCCC
Confidence 6543
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=8.1e-13 Score=116.76 Aligned_cols=125 Identities=22% Similarity=0.306 Sum_probs=80.0
Q ss_pred cEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cc--cccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCC
Q 037920 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-IT--VVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDC 200 (505)
Q Consensus 125 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~--~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~ 200 (505)
++++++++.++.+|..+.. +|++|++++|.+.. +. .++.+++|++|++++|+++.+ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~- 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE- 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-
Confidence 5666666666666655433 66777777776666 32 266677777777777776665 45666677777777776
Q ss_pred CCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC
Q 037920 201 RELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN 259 (505)
Q Consensus 201 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 259 (505)
+.+..++...+..+++|++|++++|.+ .+..|..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQI-------SCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCC-------CEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcC-------CeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 445555544456677777777777766 3444556667777777777766653
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=3.5e-13 Score=113.85 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=87.2
Q ss_pred cCCCcEEEecCCCCc--cCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCcc-CcccccCCCCC
Q 037920 72 IKLYTSIVLHDIRTN--LLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMS-LPSSLGLLSNL 147 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~~L 147 (505)
.++++++++++|.+. .++... .+++|+.|++ .++.+..+ ..+..+++|++|++++|.++. +|..+..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l---~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLST---INVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEEC---TTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEEC---cCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 467888888888886 666653 7778888888 44445555 235677788888888887777 66666667777
Q ss_pred CeeEeeccCCCC-c--ccccCCCCCcEEEccCCCCcccch----hhhCCCCCCEEeee
Q 037920 148 RTLSLDNCKLLD-I--TVVRDLKKLEILCLRGSNIKMLPI----EVSELARLRLLGLR 198 (505)
Q Consensus 148 ~~L~L~~~~l~~-~--~~i~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~ 198 (505)
++|++++|.+.+ + ..++.+++|++|++++|.++.+|. .+..+++|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777777776 3 667777777777777777776654 56777777777664
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=3.7e-13 Score=117.19 Aligned_cols=124 Identities=15% Similarity=0.228 Sum_probs=64.6
Q ss_pred ccCCCcEEEecCCCCccCCCCCCCC-CccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccc-cCCCCCC
Q 037920 71 AIKLYTSIVLHDIRTNLLPEVVESP-QLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSL-GLLSNLR 148 (505)
Q Consensus 71 ~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l-~~l~~L~ 148 (505)
.+.++++|++++|.+..++....+. +|+.|++ .++.+..++ .+..+++|++|++++|.++.+|+.+ ..+++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~L---s~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDF---SDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEEC---CSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEEC---CCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3555666666666665555444333 5555555 333333332 1355555555555555555554333 5555555
Q ss_pred eeEeeccCCCC-cc--cccCCCCCcEEEccCCCCcccchh----hhCCCCCCEEeeeC
Q 037920 149 TLSLDNCKLLD-IT--VVRDLKKLEILCLRGSNIKMLPIE----VSELARLRLLGLRD 199 (505)
Q Consensus 149 ~L~L~~~~l~~-~~--~i~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~ 199 (505)
+|++++|.+.. +. .++.+++|+.|++++|.++.+|.. +..+++|+.|++++
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 55555555544 22 455555555555555555555442 45555555555554
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=4.4e-13 Score=116.75 Aligned_cols=133 Identities=15% Similarity=0.196 Sum_probs=66.4
Q ss_pred hCCCCccEEEEeCCcCccCcccccCCC-CCCeeEeeccCCCCcccccCCCCCcEEEccCCCCcccchhh-hCCCCCCEEe
Q 037920 119 ERMMQVRVINLTNINLMSLPSSLGLLS-NLRTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPIEV-SELARLRLLG 196 (505)
Q Consensus 119 ~~l~~L~~L~l~~~~~~~l~~~l~~l~-~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~ 196 (505)
..+.+|+.|++++|.++.+|. +..+. +|++|++++|.+.++..++.+++|++|++++|.++.+|..+ ..+++|++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 345555555555555555533 22322 55555555555555445555555556666555555554333 5555566665
Q ss_pred eeCCCCCCccCh-hhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeeccc
Q 037920 197 LRDCRELEVIPA-NVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKD 257 (505)
Q Consensus 197 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 257 (505)
+++ +.++.+|. ..++.+++|+.|++++|.+...+. .....+..+++|+.|+++.+.
T Consensus 95 L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~----~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNKKH----YRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT----HHHHHHHHCTTCSEETTEECC
T ss_pred CCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh----HHHHHHHHCCccceeCCCcCC
Confidence 555 33344443 114555556666655555422110 000124555556666555544
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=3.1e-12 Score=112.97 Aligned_cols=104 Identities=25% Similarity=0.417 Sum_probs=51.3
Q ss_pred CccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeC
Q 037920 123 QVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRD 199 (505)
Q Consensus 123 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~ 199 (505)
+|+.|++++|.++.+|..+..+++|++|++++|.+.. +..+..+++|++|++++|+++.++. .+..+++|++|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 4445555555555444445555555555555555444 2334555555555555555554432 344555555555555
Q ss_pred CCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920 200 CRELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 200 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
+.+..++...+..+++|+.|++++|.+
T Consensus 112 -N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 112 -NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp -SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred -CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 334444443344555555555555443
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=4.3e-12 Score=112.10 Aligned_cols=124 Identities=22% Similarity=0.309 Sum_probs=94.8
Q ss_pred cEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCC
Q 037920 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRE 202 (505)
Q Consensus 125 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~ 202 (505)
++++++++.++.+|..+. ++|++|++++|.+.. +..+..+++|++|++++|.++.++ ..+..+++|++|++++ +.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-Cc
Confidence 578888888888887653 678888888888887 678888888888888888888775 4578888888888888 55
Q ss_pred CCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccC
Q 037920 203 LEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDV 258 (505)
Q Consensus 203 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 258 (505)
+..++...+..+++|++|++++|.+... .+..+..+++|+.|++++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVV-------PEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBC-------CTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCee-------ChhhhhcCccccEEEeCCCCe
Confidence 6666655577888888888888877432 224567778888888877764
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=2.8e-12 Score=113.25 Aligned_cols=121 Identities=19% Similarity=0.275 Sum_probs=71.6
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccCh-hHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEee
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPN-KFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLD 153 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~ 153 (505)
+.++++++.++.+|... ..++++|++ .++.+..++. .+|..+++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l---~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLL---NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEEC---CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEEC---CCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56777777776666533 226666666 4444444443 2346666666666666666664 4556666666666666
Q ss_pred ccCCCC--cccccCCCCCcEEEccCCCCccc-chhhhCCCCCCEEeeeCC
Q 037920 154 NCKLLD--ITVVRDLKKLEILCLRGSNIKML-PIEVSELARLRLLGLRDC 200 (505)
Q Consensus 154 ~~~l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~ 200 (505)
+|.+.. +..+..+++|++|++++|+++.+ |..+..+++|++|++++|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 666665 23455666666666666666544 444555666666666553
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=1.5e-11 Score=107.11 Aligned_cols=121 Identities=22% Similarity=0.314 Sum_probs=64.9
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc-ccCCCCCCeeEeec
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSNLRTLSLDN 154 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~~ 154 (505)
+.++++++.+..+|.. ..++|+.|++ .++.+..++...|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLEL---ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEEC---CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEe---CCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4566666666655532 2355666666 33444455554455566666666666666554432 35555555555555
Q ss_pred cCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCC
Q 037920 155 CKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDC 200 (505)
Q Consensus 155 ~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 200 (505)
|.+.. + ..++.+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 55555 2 2345555555555555555555433 244555555555553
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=4.1e-13 Score=142.82 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=100.1
Q ss_pred CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcE
Q 037920 93 ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEI 171 (505)
Q Consensus 93 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~ 171 (505)
.++.|+.|++ .++.+..++..++ .+++|++|+|++|.++.+|..++.+++|++|+|++|.+.. |..++.+++|++
T Consensus 222 ~l~~L~~L~L---s~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 222 DDQLWHALDL---SNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCCCEEEC---TTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred cCCCCcEEEC---CCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 8899999999 6666778888875 7999999999999999999999999999999999999998 788999999999
Q ss_pred EEccCCCCcccchhhhCCCCCCEEeeeCCCCCCccCh
Q 037920 172 LCLRGSNIKMLPIEVSELARLRLLGLRDCRELEVIPA 208 (505)
Q Consensus 172 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 208 (505)
|++++|.++.+|..++++++|++|++++|...+.+|.
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 9999999999998999999999999999654444444
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=2.6e-11 Score=105.49 Aligned_cols=105 Identities=27% Similarity=0.465 Sum_probs=45.5
Q ss_pred CCccEEEEeCCcCccCcc-cccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEee
Q 037920 122 MQVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGL 197 (505)
Q Consensus 122 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 197 (505)
++|+.|++++|.++.++. .+..+++|++|++++|.+.. + ..++.+++|++|++++|+++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 344455555544444332 23444444444444444444 2 2234444444444444444444322 344444444444
Q ss_pred eCCCCCCccChhhhcCCCCccEEEeeCCCC
Q 037920 198 RDCRELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
++ +.+..++...+..+++|++|++++|.+
T Consensus 108 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cC-CcceEeCHHHhcCCcccCEEEecCCCe
Confidence 44 233334333233444444444444433
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=9.4e-12 Score=128.34 Aligned_cols=124 Identities=24% Similarity=0.242 Sum_probs=103.8
Q ss_pred CCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeeeCC
Q 037920 122 MQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLRDC 200 (505)
Q Consensus 122 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 200 (505)
..|++|++++|.++.+|. ++.+++|++|++++|.+.. |..++.+++|+.|++++|+++.+| .++++++|+.|++++
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~- 517 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN- 517 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-
T ss_pred cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC-
Confidence 358999999999999987 9999999999999999999 789999999999999999999998 899999999999999
Q ss_pred CCCCcc--ChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEe
Q 037920 201 RELEVI--PANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLEL 253 (505)
Q Consensus 201 ~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 253 (505)
+.+..+ |.. ++.+++|+.|++++|.+...+. .....+..+++|+.|++
T Consensus 518 N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~----~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG----IQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS----CTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc----HHHHHHHHCcccCccCC
Confidence 556666 665 8999999999999998754321 11223345788888864
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=2.4e-13 Score=120.89 Aligned_cols=139 Identities=21% Similarity=0.249 Sum_probs=89.5
Q ss_pred ccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC-cccccCCCCCcEEEccCCCCcccchhhhC
Q 037920 110 SLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLPIEVSE 188 (505)
Q Consensus 110 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 188 (505)
+..+|.. +..+++|++|++++|.++.+| .+..+++|++|++++|.+.. +..++.+++|++|++++|+++.+| .+..
T Consensus 37 l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 37 IEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp CCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 3344443 467777777777777777776 67777777777777777777 555666677777888777777766 5777
Q ss_pred CCCCCEEeeeCCCCCCccCh-hhhcCCCCccEEEeeCCCCCCchhhh---hccccccccCCCCcCEEE
Q 037920 189 LARLRLLGLRDCRELEVIPA-NVLSNLSHLEELYIGYNSFGKWEVEM---EGVKNASLHELKHLTSLE 252 (505)
Q Consensus 189 l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~l~~l~~L~~L~ 252 (505)
+++|++|++++ +.+..++. ..+..+++|++|++++|.+....... .......+..+++|+.|+
T Consensus 114 l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 77788887777 34444443 22677777888888777653221100 000112356777777776
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=5.2e-11 Score=114.69 Aligned_cols=189 Identities=14% Similarity=0.143 Sum_probs=137.7
Q ss_pred cCCCcEEEecCCCCc--------------------cCCCCC--C--------CCCccEEEeeecCCCCccccChhHHhCC
Q 037920 72 IKLYTSIVLHDIRTN--------------------LLPEVV--E--------SPQLKLLFICADQESSSLTIPNKFFERM 121 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~l 121 (505)
+++++.|++++|.+. .++... . +++|+.|.+ .. .+..+++..|.++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L---~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVIL---SE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CB---CT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEEC---Cc-cccchhHHHhhcC
Confidence 677888888888876 334332 5 889999988 44 6777888888999
Q ss_pred CCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccC-------CCC----------------------------------
Q 037920 122 MQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCK-------LLD---------------------------------- 159 (505)
Q Consensus 122 ~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~-------l~~---------------------------------- 159 (505)
++|+.++++++.+..++ ..|..+.++.++...... +..
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence 99999999988876644 345555555555443310 000
Q ss_pred --------------cccc-cCCCCCcEEEccCCCCcccch-hhhCCCCCCEEeeeCCCCCCccChhhhcCCCCcc-EEEe
Q 037920 160 --------------ITVV-RDLKKLEILCLRGSNIKMLPI-EVSELARLRLLGLRDCRELEVIPANVLSNLSHLE-ELYI 222 (505)
Q Consensus 160 --------------~~~i-~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l 222 (505)
...+ ..+++|+.+++.+|+++.+|. .+..+++|+.+++.++ +..++...+..+++|+ .+.+
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEE
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEE
Confidence 0000 027899999999988998864 5888999999999874 7888888789999999 9999
Q ss_pred eCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC--CCCCcEEE
Q 037920 223 GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--FPKLQRYK 274 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~--~~~L~~L~ 274 (505)
.. .+... .+.+|..+++|+.+++..+.+..++...+ +++|+.+.
T Consensus 282 ~~-~l~~I-------~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 282 PA-SVTAI-------EFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CT-TCCEE-------CTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc-cceEE-------chhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 86 55332 34678999999999999999988887664 77777764
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=8.7e-13 Score=117.22 Aligned_cols=143 Identities=15% Similarity=0.187 Sum_probs=109.9
Q ss_pred CCcEEEecCC--CCccCCCC-CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcccccCCCCCCee
Q 037920 74 LYTSIVLHDI--RTNLLPEV-VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSSLGLLSNLRTL 150 (505)
Q Consensus 74 ~l~~l~l~~~--~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L 150 (505)
+++...+.+. .++.++.. ..+++|++|++ .++.+..+| . +..+++|++|++++|.++.+|..+..+++|++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~l---s~n~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLAL---STNNIEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEEL 98 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEEC---SEEEESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEEC---CCCCCcccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence 3555555543 33444433 38889999999 555566677 3 588999999999999999998888888999999
Q ss_pred EeeccCCCCcccccCCCCCcEEEccCCCCcccch--hhhCCCCCCEEeeeCCCCCCccC---------hhhhcCCCCccE
Q 037920 151 SLDNCKLLDITVVRDLKKLEILCLRGSNIKMLPI--EVSELARLRLLGLRDCRELEVIP---------ANVLSNLSHLEE 219 (505)
Q Consensus 151 ~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~---------~~~~~~l~~L~~ 219 (505)
++++|.+..++.++.+++|++|++++|.++.++. .+..+++|++|++++|......| ...+..+++|+.
T Consensus 99 ~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 99 WISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred ECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 9999999885578889999999999999988764 68899999999999854322222 223678899999
Q ss_pred EE
Q 037920 220 LY 221 (505)
Q Consensus 220 L~ 221 (505)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 86
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=1.6e-10 Score=100.03 Aligned_cols=100 Identities=27% Similarity=0.480 Sum_probs=58.0
Q ss_pred cEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCCC
Q 037920 125 RVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDCR 201 (505)
Q Consensus 125 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 201 (505)
+.++++++.++.+|..+. ++|++|++++|.+.. +..++.+++|++|++++|+++.+|.. +.++++|++|++++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence 456666666666665443 566666666666655 34556666666666666666666543 35566666666665 3
Q ss_pred CCCccChhhhcCCCCccEEEeeCCCC
Q 037920 202 ELEVIPANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 202 ~~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (505)
.+..++...+..+++|++|++++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 44455544345555566666555544
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.8e-10 Score=99.41 Aligned_cols=102 Identities=24% Similarity=0.401 Sum_probs=65.9
Q ss_pred ccEEEEeCCcCccCcccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccchh-hhCCCCCCEEeeeCC
Q 037920 124 VRVINLTNINLMSLPSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPIE-VSELARLRLLGLRDC 200 (505)
Q Consensus 124 L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 200 (505)
.+.++++++.++.+|..+ .++|++|++++|.+.. +..++.+++|++|++++|+++.+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence 456777777777776654 3667777777777666 35566677777777777777666543 45667777777766
Q ss_pred CCCCccChhhhcCCCCccEEEeeCCCCC
Q 037920 201 RELEVIPANVLSNLSHLEELYIGYNSFG 228 (505)
Q Consensus 201 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 228 (505)
+.+..++...+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 4555555544566666666666666553
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=2.6e-10 Score=98.75 Aligned_cols=103 Identities=17% Similarity=0.308 Sum_probs=55.7
Q ss_pred cEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc-ccCCCCCCeeEeec
Q 037920 76 TSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSNLRTLSLDN 154 (505)
Q Consensus 76 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~~ 154 (505)
+.++++++.+..+|.... ++|+.|++ .++.+..+++..|.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWL---NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEEC---CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEe---CCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 456666666666654322 55666666 44444444444445566666666666665555543 34555555555555
Q ss_pred cCCCC-cc-cccCCCCCcEEEccCCCCccc
Q 037920 155 CKLLD-IT-VVRDLKKLEILCLRGSNIKML 182 (505)
Q Consensus 155 ~~l~~-~~-~i~~l~~L~~L~l~~~~l~~l 182 (505)
|.+.. +. .+..+++|++|++++|.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 55555 32 255555555555555555433
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=7.3e-10 Score=95.51 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=59.6
Q ss_pred CcEEEecCCCCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCccc-ccCCCCCCeeEee
Q 037920 75 YTSIVLHDIRTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPSS-LGLLSNLRTLSLD 153 (505)
Q Consensus 75 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~ 153 (505)
.+.++++++.+..+|... .++|+.|++ .++.+..++...|..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L---~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEEC---CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEc---CCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 356777777776666433 256666666 44445555444456666666666666666665543 3556666666666
Q ss_pred ccCCCC-c-ccccCCCCCcEEEccCCCCc
Q 037920 154 NCKLLD-I-TVVRDLKKLEILCLRGSNIK 180 (505)
Q Consensus 154 ~~~l~~-~-~~i~~l~~L~~L~l~~~~l~ 180 (505)
+|.+.. + ..+..+++|++|++++|.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666555 3 33555666666666666554
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.00 E-value=8.7e-09 Score=101.49 Aligned_cols=233 Identities=16% Similarity=0.188 Sum_probs=114.2
Q ss_pred CCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCee
Q 037920 73 KLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTL 150 (505)
Q Consensus 73 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L 150 (505)
..++.+.+.+ .+..++... .-.+|+.+.+ ..+ +..++...|.++ +|+.+.+.. .++.++ ..|.++++|+.+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l---~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVL---NEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEEC---CTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEe---CCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 4455555543 233333322 1235666666 222 445555555553 466666654 444433 345666666666
Q ss_pred EeeccCCCC-cccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCC
Q 037920 151 SLDNCKLLD-ITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFG 228 (505)
Q Consensus 151 ~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 228 (505)
++..|.+.. +.......+|+.+.+.. +++.++ ..+.++++|+.+.+.. .+..++...+.. .+|+.+.+. +.+.
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeC-CCcc
Confidence 666665555 33222345666666653 355443 3455566666666654 244455443444 556666664 2232
Q ss_pred CchhhhhccccccccCCCCcCEEEeecccCC-----CCCCCCC--CCCCcEEEEEEcceeecccccceEEecCCCCccch
Q 037920 229 KWEVEMEGVKNASLHELKHLTSLELHIKDVN-----TLPRGLF--FPKLQRYKIHIGGYYYAGVWRRELKICPDSKIRLK 301 (505)
Q Consensus 229 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~l~~~~~--~~~L~~L~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 301 (505)
.. ....|..+++|+.+.+..+... .++...+ +++|+.+.+. .......
T Consensus 261 ~I-------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~------------------~~i~~I~ 315 (401)
T 4fdw_A 261 NI-------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP------------------ESIRILG 315 (401)
T ss_dssp EE-------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC------------------TTCCEEC
T ss_pred EE-------ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC------------------CceEEEh
Confidence 21 1244566666666666554433 2333332 5555555542 0011111
Q ss_pred hhHHHHhcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCC
Q 037920 302 DGLIVQLQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHP 348 (505)
Q Consensus 302 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 348 (505)
......+++|+.+.+..+ +..+....+ .++ +|+.+.+.++.
T Consensus 316 ~~aF~~c~~L~~l~lp~~----l~~I~~~aF-~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN----VTQINFSAF-NNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTTTTCCSCCEEEECTT----CCEECTTSS-SSS-CCCEEEECCSS
T ss_pred hhhhcCCCCccEEEECcc----ccEEcHHhC-CCC-CCCEEEEcCCC
Confidence 111222566777777543 334433332 455 77777777765
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.93 E-value=1.8e-10 Score=112.41 Aligned_cols=133 Identities=21% Similarity=0.204 Sum_probs=78.5
Q ss_pred CCccEEEEeCCcCcc--CcccccCCCCCCeeEeeccCCCC--cccc-----cCCCCCcEEEccCCCCcc-----cchhhh
Q 037920 122 MQVRVINLTNINLMS--LPSSLGLLSNLRTLSLDNCKLLD--ITVV-----RDLKKLEILCLRGSNIKM-----LPIEVS 187 (505)
Q Consensus 122 ~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L~L~~~~l~~--~~~i-----~~l~~L~~L~l~~~~l~~-----lp~~i~ 187 (505)
++|+.|++++|.++. +..-...+++|++|+|++|.+.+ ...+ ...++|++|++++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 567777777766653 11112234566777777776665 2232 245677777777776653 344556
Q ss_pred CCCCCCEEeeeCCCCCCcc-----ChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC
Q 037920 188 ELARLRLLGLRDCRELEVI-----PANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN 259 (505)
Q Consensus 188 ~l~~L~~L~l~~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 259 (505)
..++|++|++++|. ++.. +.. +...++|++|++++|.+.+... ..+...+...++|+.|++++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g~---~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTAA---LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHHH---HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHHH---HHHHHHHHhCCCCCEEeccCCCCC
Confidence 67777777777743 3332 222 4556677777777777654321 234445556677777777777654
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=9.9e-09 Score=98.61 Aligned_cols=168 Identities=13% Similarity=0.121 Sum_probs=128.7
Q ss_pred cCCCcEEEecCCCCccCCCCC--CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcC----cc---------
Q 037920 72 IKLYTSIVLHDIRTNLLPEVV--ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINL----MS--------- 136 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----~~--------- 136 (505)
+.+++.+.+.+ .+..++... .|++|+.+.+ ..+.+..++...|..+.++..+....... ..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l---~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQI---RKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEB---CCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEc---CCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 78999999998 888887643 8999999999 66666677777777777777665544110 00
Q ss_pred --------------Cccc---------------------------c-cCCCCCCeeEeeccCCCC-c-ccccCCCCCcEE
Q 037920 137 --------------LPSS---------------------------L-GLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEIL 172 (505)
Q Consensus 137 --------------l~~~---------------------------l-~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L 172 (505)
++.. + ..+++|+++++.+|.+.. + ..+..+.+|+.|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 0000 0 137899999999999888 4 678899999999
Q ss_pred EccCCCCcccc-hhhhCCCCCC-EEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCE
Q 037920 173 CLRGSNIKMLP-IEVSELARLR-LLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTS 250 (505)
Q Consensus 173 ~l~~~~l~~lp-~~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 250 (505)
++..+ ++.++ ..+.++++|+ .+.+.+ .+..++...+..+++|+.+++..+.+.... +..|.++++|+.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~-------~~aF~~~~~L~~ 325 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLG-------DELFGNGVPSKL 325 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEEC-------TTTTCTTCCCCE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccc-------hhhhcCCcchhh
Confidence 99987 88775 4688999999 999976 677888777999999999999888875443 367889999998
Q ss_pred EEe
Q 037920 251 LEL 253 (505)
Q Consensus 251 L~l 253 (505)
+..
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 864
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=1.7e-07 Score=92.19 Aligned_cols=187 Identities=12% Similarity=0.189 Sum_probs=109.1
Q ss_pred ccCCCcEEEecCCCCccCCCCC-CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCcc-cccCCCCCC
Q 037920 71 AIKLYTSIVLHDIRTNLLPEVV-ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLPS-SLGLLSNLR 148 (505)
Q Consensus 71 ~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~ 148 (505)
.+.+++.+++.+|.+..++... .+.+|+.+.+ . ..+..++...|.++.+|+.+++..+ ++.++. .|.+ .+|+
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l--p--~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFVYAGIEEVLL--P--VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC--C--TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred CcccCCeeecCCCcceEechhhEeecccCEEEe--C--CchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence 3455566666555555554433 4455666655 2 2245555566666666666666653 444333 3333 5666
Q ss_pred eeEeeccCCCC--cccccCCCCCcEEEccCCCCc-----cc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEE
Q 037920 149 TLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIK-----ML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEEL 220 (505)
Q Consensus 149 ~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-----~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 220 (505)
.+.+.. .+.. ...+..+++|+.+++.++.+. .+ +..+..+++|+.+.+.. .+..++...+..+++|+.+
T Consensus 252 ~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 252 TVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp EEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEE
T ss_pred EEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEE
Confidence 666632 3444 355667777777777766443 34 24566777777777763 3666666667777777777
Q ss_pred EeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCCCCCCCCC--C-CCCcEEEE
Q 037920 221 YIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVNTLPRGLF--F-PKLQRYKI 275 (505)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~--~-~~L~~L~~ 275 (505)
.+..+ +... -..+|.++ +|+.+.+.++....++...+ + .+++.+.+
T Consensus 329 ~lp~~-l~~I-------~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 329 TIPAN-VTQI-------NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp EECTT-CCEE-------CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred EECcc-ccEE-------cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 77543 3222 23456777 78888888777666555443 2 35556655
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.5e-08 Score=98.22 Aligned_cols=89 Identities=18% Similarity=0.127 Sum_probs=41.6
Q ss_pred CccccChhHHhCCCCccEEEEeC-CcCccCc-ccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccch
Q 037920 109 SSLTIPNKFFERMMQVRVINLTN-INLMSLP-SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPI 184 (505)
Q Consensus 109 ~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~ 184 (505)
.+..+|. +..+.+|+.|+|++ |.++.+| ..|..+++|++|+|++|.+.. +..++.+++|++|+|++|+++.+|.
T Consensus 20 ~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 3444444 34455555555553 5555443 234455555555555555444 2344455555555555555554443
Q ss_pred hhhCCCCCCEEeeeC
Q 037920 185 EVSELARLRLLGLRD 199 (505)
Q Consensus 185 ~i~~l~~L~~L~l~~ 199 (505)
.+.....|+.|++.+
T Consensus 98 ~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 98 KTVQGLSLQELVLSG 112 (347)
T ss_dssp TTTCSCCCCEEECCS
T ss_pred HHcccCCceEEEeeC
Confidence 322222255555544
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.72 E-value=1.9e-09 Score=105.23 Aligned_cols=157 Identities=14% Similarity=0.096 Sum_probs=114.1
Q ss_pred cccCCCcEEEecCCCCccCC-----CCC--CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccC-----
Q 037920 70 SAIKLYTSIVLHDIRTNLLP-----EVV--ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSL----- 137 (505)
Q Consensus 70 ~~~~~l~~l~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l----- 137 (505)
...+.++.+++++|.+.... ... ..++|++|++ +++.....-...++..+++|+.|++++|.++..
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~L--s~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNL--ASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEEC--TTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEe--cCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 34678999999999984321 111 3479999999 444433322333445567899999999998752
Q ss_pred cccc-cCCCCCCeeEeeccCCCC--c----ccccCCCCCcEEEccCCCCcc-----cchhhhCCCCCCEEeeeCCCCCCc
Q 037920 138 PSSL-GLLSNLRTLSLDNCKLLD--I----TVVRDLKKLEILCLRGSNIKM-----LPIEVSELARLRLLGLRDCRELEV 205 (505)
Q Consensus 138 ~~~l-~~l~~L~~L~L~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~ 205 (505)
...+ ...++|++|+|++|.++. . ..+..+++|++|++++|.++. ++..+...++|++|++++|. ++.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~ 225 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGD 225 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCH
Confidence 2223 357889999999999876 2 445788999999999998873 45667788999999999954 443
Q ss_pred c-----ChhhhcCCCCccEEEeeCCCCCCc
Q 037920 206 I-----PANVLSNLSHLEELYIGYNSFGKW 230 (505)
Q Consensus 206 ~-----~~~~~~~l~~L~~L~l~~~~~~~~ 230 (505)
. +.. +...++|++|++++|.+.+.
T Consensus 226 ~g~~~l~~~-L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 226 TAALALARA-AREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHH-HHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHH-HHhCCCCCEEeccCCCCCHH
Confidence 2 222 45678999999999998654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=5e-08 Score=94.44 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=87.8
Q ss_pred cEEEecCC-CCccCCCCCCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEee
Q 037920 76 TSIVLHDI-RTNLLPEVVESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLD 153 (505)
Q Consensus 76 ~~l~l~~~-~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~ 153 (505)
..++.+++ .+..+|....+++|+.|+| ++++.+..++...|..+++|++|+|++|.++.++ ..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l--~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYI--ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEEC--CSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEc--cCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 8889998558899999999 3348888888877899999999999999999865 478999999999999
Q ss_pred ccCCCC-cccccCCCCCcEEEccCCCCccc
Q 037920 154 NCKLLD-ITVVRDLKKLEILCLRGSNIKML 182 (505)
Q Consensus 154 ~~~l~~-~~~i~~l~~L~~L~l~~~~l~~l 182 (505)
+|.+.. |..+.....|+.|++.+|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCC
Confidence 999999 65544444499999999988743
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.60 E-value=9.7e-07 Score=86.91 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=65.2
Q ss_pred CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEeeccCCCC--cccccCCCCC
Q 037920 93 ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKL 169 (505)
Q Consensus 93 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L 169 (505)
+|.+|+++.+ . ..+..++...|.++.+|+.+++..+ ++.++ ..+..+..|+.+.+..+ +.. ...+..+..+
T Consensus 69 ~c~~L~~i~l--p--~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 69 GCRKVTEIKI--P--STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TCTTEEEEEC--C--TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred CCCCceEEEe--C--CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 6778888877 3 2356677777788888888887654 44443 35666777776665432 222 1223333222
Q ss_pred cEEEccCCCCccc-chhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEeeC
Q 037920 170 EILCLRGSNIKML-PIEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIGY 224 (505)
Q Consensus 170 ~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 224 (505)
...... .+..+ ...+..+++|+.+.+.. .+..++...+..+++|+.+.+..
T Consensus 143 ~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 143 EITIPE--GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccCc--cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC
Confidence 222111 12222 23455666666666643 23445544455666666666553
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.59 E-value=9.5e-08 Score=92.39 Aligned_cols=180 Identities=17% Similarity=0.212 Sum_probs=110.6
Q ss_pred cCCCcEEEecCCCCcc---------CC-CCCCCCCccEEEeeecCCCC----c-----cccChhHHhCCCCccEEEEeCC
Q 037920 72 IKLYTSIVLHDIRTNL---------LP-EVVESPQLKLLFICADQESS----S-----LTIPNKFFERMMQVRVINLTNI 132 (505)
Q Consensus 72 ~~~l~~l~l~~~~~~~---------l~-~~~~~~~L~~L~l~~~~~~~----~-----~~~~~~~~~~l~~L~~L~l~~~ 132 (505)
...++.|.+....... +. ....+++|++|.+ ..... . ..+ ..++..+++|+.|+++++
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l--~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFW--GDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEE--CCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheee--cCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCC
Confidence 3456777776544321 11 1225788999988 22211 1 112 245678899999999887
Q ss_pred cCccCcccccCCCCCCeeEeeccCCCC--ccccc--CCCCCcEEEccCC--------CCcccchhh--hCCCCCCEEeee
Q 037920 133 NLMSLPSSLGLLSNLRTLSLDNCKLLD--ITVVR--DLKKLEILCLRGS--------NIKMLPIEV--SELARLRLLGLR 198 (505)
Q Consensus 133 ~~~~l~~~l~~l~~L~~L~L~~~~l~~--~~~i~--~l~~L~~L~l~~~--------~l~~lp~~i--~~l~~L~~L~l~ 198 (505)
.-..++. + .+++|++|++..|.+.. +..++ .+++|++|+|+.+ .+..+...+ ..+++|++|++.
T Consensus 183 ~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~ 260 (362)
T 2ra8_A 183 NNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260 (362)
T ss_dssp BTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEE
T ss_pred CCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCC
Confidence 4234444 3 38899999998888766 45554 7889999988531 122232222 357889999998
Q ss_pred CCCCCCccChhh--hcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEeecccCC
Q 037920 199 DCRELEVIPANV--LSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN 259 (505)
Q Consensus 199 ~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 259 (505)
+|......+... ...+++|++|+++.|.+.+... ..++..+..+++|+.|+++.|.++
T Consensus 261 ~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~---~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA---RLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH---HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH---HHHHhhcccCCcceEEECCCCcCC
Confidence 854332222221 1357789999998887754321 234445567788899998877654
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.57 E-value=1.5e-06 Score=85.56 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=63.4
Q ss_pred ccCCCcEEEecCCCCccCCCCC--CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCC
Q 037920 71 AIKLYTSIVLHDIRTNLLPEVV--ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNL 147 (505)
Q Consensus 71 ~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L 147 (505)
.+.+++.+.+.. .+..++... +|++|+++.+ . . ....++...|..+.+|+.+.+..+ ++.+. ..+..+..+
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~l--p-~-~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINI--P-D-SVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECC--C-T-TCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEe--C-C-CceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 445556666543 244444332 5566666665 2 1 134455555566666655544432 22211 223333222
Q ss_pred CeeEeeccCCCCcccccCCCCCcEEEccCCCCcccc-hhhhCCCCCCEEeeeCCCCCCccChhhhcCCCCccEEEee
Q 037920 148 RTLSLDNCKLLDITVVRDLKKLEILCLRGSNIKMLP-IEVSELARLRLLGLRDCRELEVIPANVLSNLSHLEELYIG 223 (505)
Q Consensus 148 ~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 223 (505)
...........+...+..+.+|+.+.+..+ ++.++ ..+..+.+|+.+.+..+ +..++...+..+..|+.+.+.
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecC
Confidence 211111111001234455566666666433 23332 23455566666655431 344444444555555555444
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=4.1e-08 Score=83.53 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=68.5
Q ss_pred cccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccccCccccc
Q 037920 386 PKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKMDDLEKLR 465 (505)
Q Consensus 386 ~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 465 (505)
.+|+.|++++|.+++.+... +..+++|++|++++|..+++- ++..+......+++|++|+|++|++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~--------L~~~~~L~~L~L~~C~~ItD~----gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH--------MEGLQYVEKIRLCKCHYIEDG----CLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG--------GTTCSCCCEEEEESCTTCCHH----HHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHH--------hcCCCCCCEEEeCCCCccCHH----HHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 35899999999876653321 678899999999999988843 333220000124689999999999986
Q ss_pred ccccCCcccccCCCccceecccCcccee
Q 037920 466 NFCTGDVDILEFPSLKELIINRCPEFLM 493 (505)
Q Consensus 466 ~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 493 (505)
+-.- ..+..+++|+.|++++||+++.
T Consensus 129 D~Gl--~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 129 DKGI--IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHH--HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHH--HHHhcCCCCCEEECCCCCCCCc
Confidence 5321 1256799999999999998875
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=3.5e-07 Score=77.77 Aligned_cols=40 Identities=5% Similarity=0.019 Sum_probs=17.5
Q ss_pred ceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCcc
Q 037920 310 GIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAE 353 (505)
Q Consensus 310 ~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~ 353 (505)
+|+.|++++| .....-...+ .++++|++|++++|..+++.
T Consensus 62 ~L~~LDLs~~--~Itd~GL~~L--~~~~~L~~L~L~~C~~ItD~ 101 (176)
T 3e4g_A 62 KIQAIDATDS--CIMSIGFDHM--EGLQYVEKIRLCKCHYIEDG 101 (176)
T ss_dssp CEEEEEEESC--CCCGGGGGGG--TTCSCCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCC--CccHHHHHHh--cCCCCCCEEEeCCCCccCHH
Confidence 3555555555 2222222223 34555555555555444433
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=8.9e-07 Score=85.55 Aligned_cols=98 Identities=22% Similarity=0.242 Sum_probs=54.9
Q ss_pred hcceeEEeecCCC-----CCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhcccccccccc
Q 037920 308 LQGIEDLGLSKLP-----EQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEK 382 (505)
Q Consensus 308 ~~~L~~L~l~~~~-----~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~ 382 (505)
+|+|+.|+|+.+. ......+...+....+|+|+.|.+.+|.. .+.. ...+...
T Consensus 218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i---------------------~~~~-~~~la~a 275 (362)
T 2ra8_A 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE---------------------QNVV-VEMFLES 275 (362)
T ss_dssp CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT---------------------HHHH-HHHHHHC
T ss_pred CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC---------------------chHH-HHHHHhC
Confidence 5777777775310 01222333333224578899999888761 1100 1111222
Q ss_pred ccccccccccccccccccccccceeeccCccccccccccEEEEccccccc
Q 037920 383 VTLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLE 432 (505)
Q Consensus 383 ~~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~ 432 (505)
+.+|+|++|+++.|.+.+.....+ .. .+..+++|+.|++++|. +.
T Consensus 276 ~~~~~L~~LdLs~n~L~d~G~~~L--~~--~L~~l~~L~~L~L~~n~-i~ 320 (362)
T 2ra8_A 276 DILPQLETMDISAGVLTDEGARLL--LD--HVDKIKHLKFINMKYNY-LS 320 (362)
T ss_dssp SSGGGCSEEECCSSCCBHHHHHHH--HT--THHHHTTCSEEECCSBB-CC
T ss_pred ccCCCCCEEECCCCCCChHHHHHH--Hh--hcccCCcceEEECCCCc-CC
Confidence 358889999998877766422111 11 14677888999988885 54
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.10 E-value=1.5e-06 Score=75.62 Aligned_cols=108 Identities=16% Similarity=0.128 Sum_probs=58.5
Q ss_pred HhCCCCccEEEEeCC-cCcc-----CcccccCCCCCCeeEeeccCCCC--c----ccccCCCCCcEEEccCCCCcc----
Q 037920 118 FERMMQVRVINLTNI-NLMS-----LPSSLGLLSNLRTLSLDNCKLLD--I----TVVRDLKKLEILCLRGSNIKM---- 181 (505)
Q Consensus 118 ~~~l~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~L~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~~---- 181 (505)
+...+.|+.|++++| .+.. +...+...++|++|+|++|.+.+ . ..+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 456667777777776 5543 33445556666666666666654 1 333344566666666666652
Q ss_pred -cchhhhCCCCCCEEee--eCCCCCCcc-----ChhhhcCCCCccEEEeeCCCC
Q 037920 182 -LPIEVSELARLRLLGL--RDCRELEVI-----PANVLSNLSHLEELYIGYNSF 227 (505)
Q Consensus 182 -lp~~i~~l~~L~~L~l--~~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~ 227 (505)
+...+...++|++|++ ++ +.++.. ... +...+.|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHH-HHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHH-HHhCCCcCEEeccCCCC
Confidence 3344555556666666 44 233321 111 33445566666655543
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=2.5e-06 Score=74.23 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=87.2
Q ss_pred cccccCCCCCCeeEeecc-CCCC--c----ccccCCCCCcEEEccCCCCcc-----cchhhhCCCCCCEEeeeCCCCCCc
Q 037920 138 PSSLGLLSNLRTLSLDNC-KLLD--I----TVVRDLKKLEILCLRGSNIKM-----LPIEVSELARLRLLGLRDCRELEV 205 (505)
Q Consensus 138 ~~~l~~l~~L~~L~L~~~-~l~~--~----~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~ 205 (505)
...+...++|++|+|++| .+.. . ..+...++|++|++++|.+.. +...+...++|++|++++| .++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 345677899999999999 7876 2 556678899999999998873 4556677789999999985 4443
Q ss_pred -----cChhhhcCCCCccEEEe--eCCCCCCchhhhhccccccccCCCCcCEEEeecccCC
Q 037920 206 -----IPANVLSNLSHLEELYI--GYNSFGKWEVEMEGVKNASLHELKHLTSLELHIKDVN 259 (505)
Q Consensus 206 -----~~~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 259 (505)
+... +...+.|++|++ ++|.+.+... ..+...+...+.|+.|++++|.+.
T Consensus 108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~---~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNNVE---MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHH---HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHH---HHHHHHHHhCCCcCEEeccCCCCC
Confidence 2333 567788999999 7788765331 234556677788999999888753
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.79 E-value=0.0008 Score=65.89 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=47.7
Q ss_pred hcceeEEeecCCCCCCcchhhhhhhccCCCCccEEEEeCCCCCCccccccccchhcchhhhhhhhccccccccccccccc
Q 037920 308 LQGIEDLGLSKLPEQDVDYFVNELAKVGPSQLKHLHIWNHPPNPAESKRREESTDVMQSHEIILKVNVNALFVEKVTLPK 387 (505)
Q Consensus 308 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~~~l~~L~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (505)
+++|+.+.+.. .+..++...+ .++.+|+.+.+..+- +.+. .. ....+.+
T Consensus 287 c~~L~~i~l~~----~i~~I~~~aF-~~c~~L~~i~lp~~v-------~~I~----------------~~---aF~~C~~ 335 (394)
T 4gt6_A 287 CPALQDIEFSS----RITELPESVF-AGCISLKSIDIPEGI-------TQIL----------------DD---AFAGCEQ 335 (394)
T ss_dssp CTTCCEEECCT----TCCEECTTTT-TTCTTCCEEECCTTC-------CEEC----------------TT---TTTTCTT
T ss_pred ccccccccCCC----cccccCceee-cCCCCcCEEEeCCcc-------cEeh----------------Hh---HhhCCCC
Confidence 67788888754 3555555443 678888888886531 1110 00 0124667
Q ss_pred cccccccccccccccccceeeccCccccccccccEEEEccc
Q 037920 388 LENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNC 428 (505)
Q Consensus 388 L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c 428 (505)
|+.+.|... ++.+.... +..+++|+.+.+.+.
T Consensus 336 L~~i~ip~s-v~~I~~~a--------F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESA--------FSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECTT-CCBCCGGG--------GTTCTTCCEEEESSC
T ss_pred CCEEEECcc-cCEEhHhH--------hhCCCCCCEEEECCc
Confidence 777777543 44443321 667788888888764
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.76 E-value=1.6e-05 Score=72.88 Aligned_cols=78 Identities=23% Similarity=0.346 Sum_probs=36.9
Q ss_pred CCCCCCeeEeeccCCCCc----ccccCCCCCcEEEccCCCCcccchhhhCCC--CCCEEeeeCCCCCCccC------hhh
Q 037920 143 LLSNLRTLSLDNCKLLDI----TVVRDLKKLEILCLRGSNIKMLPIEVSELA--RLRLLGLRDCRELEVIP------ANV 210 (505)
Q Consensus 143 ~l~~L~~L~L~~~~l~~~----~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~~------~~~ 210 (505)
++++|+.|+|++|.+..+ ..+..+++|+.|+|++|.++.+. .+..+. +|++|++.+|.....+| ..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 345555555555555442 22334555555555555555441 223333 55555555544333232 112
Q ss_pred hcCCCCccEEE
Q 037920 211 LSNLSHLEELY 221 (505)
Q Consensus 211 ~~~l~~L~~L~ 221 (505)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45556666654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.67 E-value=0.0011 Score=64.83 Aligned_cols=121 Identities=13% Similarity=0.122 Sum_probs=67.8
Q ss_pred CCcEEEecCCCCccCCCCC--CCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCee
Q 037920 74 LYTSIVLHDIRTNLLPEVV--ESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTL 150 (505)
Q Consensus 74 ~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L 150 (505)
.++.+.+..+ ++.+.... +|.+|+.+.+..........+....|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4788888743 56665443 7889999888211122355677777777777777665543 33333 345667777777
Q ss_pred EeeccCCCC--cccccCCCCCcEEEccCCCCcccchhhhCCCCCCEEeee
Q 037920 151 SLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLPIEVSELARLRLLGLR 198 (505)
Q Consensus 151 ~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 198 (505)
.+..+ +.. ...+..+.+|+.+.+..+ ++.+........+|+.+.+.
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEEC
T ss_pred cccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEEC
Confidence 77533 222 244455666666666543 33332222223445555553
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.55 E-value=6.9e-05 Score=68.61 Aligned_cols=60 Identities=28% Similarity=0.401 Sum_probs=28.4
Q ss_pred CCCCCcEEEccCCCCcccc---hhhhCCCCCCEEeeeCCCCCCccChhhhcCCC--CccEEEeeCCCC
Q 037920 165 DLKKLEILCLRGSNIKMLP---IEVSELARLRLLGLRDCRELEVIPANVLSNLS--HLEELYIGYNSF 227 (505)
Q Consensus 165 ~l~~L~~L~l~~~~l~~lp---~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~ 227 (505)
++++|+.|++++|+++.++ ..+..+++|+.|++++ +.+..+.. +..+. +|++|++++|.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE--LDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG--GGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh--hhhcccCCcceEEccCCcC
Confidence 3455555555555554332 3344555555555555 33333311 22222 555555555554
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.40 E-value=0.019 Score=55.59 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=32.7
Q ss_pred cccccccccccccccccccccceeeccCccccccccccEEEEccccccccceecccccccccccccccccccccc
Q 037920 384 TLPKLENLELDSINVERIWQSHVAVMSCVSNNTFVRLQRIEIKNCRVLEELIVVENQEERKNSIVIFPQLQYLKM 458 (505)
Q Consensus 384 ~~~~L~~L~l~~~~l~~~~~~~~~v~~c~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~p~L~~L~l 458 (505)
.+++|+.+.+.++.++.++... ...+++|+.+.+.. .++.|. .. .-..|.+|+.+.+
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~a--------F~~c~~L~~i~lp~--~l~~I~--~~------aF~~C~~L~~i~i 340 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRV--------FMDCVKLSSVTLPT--ALKTIQ--VY------AFKNCKALSTISY 340 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTT--------TTTCTTCCEEECCT--TCCEEC--TT------TTTTCTTCCCCCC
T ss_pred cccccccccccccccceehhhh--------hcCCCCCCEEEcCc--cccEEH--HH------HhhCCCCCCEEEE
Confidence 4667777777766666664432 56667777777742 245442 11 1234566776665
No 160
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.32 E-value=5.9e-05 Score=77.43 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhccccccccccccCcEEeehhhHHHHHHHHhcccc
Q 037920 4 ARARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTEQN 51 (505)
Q Consensus 4 ~~~~~~~~~~~Li~~~l~~~~~~~~~~~~~mHdli~dla~~~~~~e~~ 51 (505)
.++.++ ||++|+++||++....++..+|+|||+||++|++++.+++.
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 355666 99999999999998654567899999999999999887753
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.90 E-value=0.058 Score=52.07 Aligned_cols=127 Identities=13% Similarity=0.198 Sum_probs=70.8
Q ss_pred hHHhCCCCccEEEEeCCcCccC-cccccCCCCCCeeEeeccCCCC--cccccCCCCCcEEEccCCCCcccc-hhhhCCCC
Q 037920 116 KFFERMMQVRVINLTNINLMSL-PSSLGLLSNLRTLSLDNCKLLD--ITVVRDLKKLEILCLRGSNIKMLP-IEVSELAR 191 (505)
Q Consensus 116 ~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~ 191 (505)
..|..+.+|+.+.+..+ ++.+ ...+..+..|+.+.+..+ +.. ...+..+.+|+.+.+.. +++.++ ..+..+.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccc
Confidence 33456666666666543 2222 234556666777666543 333 24455566677766643 344443 24566677
Q ss_pred CCEEeeeCCCCCCccChhhhcCCCCccEEEeeCCCCCCchhhhhccccccccCCCCcCEEEee
Q 037920 192 LRLLGLRDCRELEVIPANVLSNLSHLEELYIGYNSFGKWEVEMEGVKNASLHELKHLTSLELH 254 (505)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 254 (505)
|+.+.+.+ +.+..++...+..+.+|+.+.+..+ +... -..+|.++.+|+.+.+.
T Consensus 288 L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I-------~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 288 LTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA-LKTI-------QVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEE-------CTTTTTTCTTCCCCCCC
T ss_pred cccccccc-cccceehhhhhcCCCCCCEEEcCcc-ccEE-------HHHHhhCCCCCCEEEEC
Confidence 77777755 4455666555666777777776532 3221 12456666677766654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.65 E-value=0.012 Score=50.83 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=43.3
Q ss_pred HhCCCCccEEEEeCC-cCcc-----CcccccCCCCCCeeEeeccCCCC--c----ccccCCCCCcEEEccCCCCc-----
Q 037920 118 FERMMQVRVINLTNI-NLMS-----LPSSLGLLSNLRTLSLDNCKLLD--I----TVVRDLKKLEILCLRGSNIK----- 180 (505)
Q Consensus 118 ~~~l~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~L~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~----- 180 (505)
..+-+.|+.|+++++ .+.. +.+.+..-..|+.|+|++|.+.+ . ..+..-+.|+.|+|+.|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345566777777664 5442 33445555666666666666654 1 23334455666666666554
Q ss_pred ccchhhhCCCCCCEEeeeC
Q 037920 181 MLPIEVSELARLRLLGLRD 199 (505)
Q Consensus 181 ~lp~~i~~l~~L~~L~l~~ 199 (505)
.+...+..-+.|++|++++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 1222333334455555543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.54 E-value=0.01 Score=51.23 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=15.8
Q ss_pred cCCCCCcEEEccCCCCc-----ccchhhhCCCCCCEEeeeC
Q 037920 164 RDLKKLEILCLRGSNIK-----MLPIEVSELARLRLLGLRD 199 (505)
Q Consensus 164 ~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~ 199 (505)
..-+.|+.|+|++|.+. .+...+..=+.|++|+++.
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 33444555555555443 2222333334455555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.18 E-value=0.063 Score=42.97 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=22.2
Q ss_pred EEEEeCCcCc--cCcccccCCCCCCeeEeeccCCCC-c-ccccCCCCCcEEEccCCC
Q 037920 126 VINLTNINLM--SLPSSLGLLSNLRTLSLDNCKLLD-I-TVVRDLKKLEILCLRGSN 178 (505)
Q Consensus 126 ~L~l~~~~~~--~l~~~l~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~ 178 (505)
.++.+++.++ .+|..+ ..+|++|+|++|.|+. + ..+..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4445555554 444322 1234444444444444 1 233344444444444443
No 165
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.91 E-value=0.034 Score=62.89 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhccccccccccccCcEEeehhhHHHHHHHHhcc
Q 037920 5 RARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIASTE 49 (505)
Q Consensus 5 ~~~~~~~~~~Li~~~l~~~~~~~~~~~~~mHdli~dla~~~~~~e 49 (505)
++.+++++++|++++|++....+...+|+|||+||++|+..+.+|
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 567899999999999999877555567999999999999987765
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.55 E-value=0.13 Score=41.12 Aligned_cols=34 Identities=35% Similarity=0.392 Sum_probs=15.7
Q ss_pred CccEEEEeCCcCccCcc-cccCCCCCCeeEeeccC
Q 037920 123 QVRVINLTNINLMSLPS-SLGLLSNLRTLSLDNCK 156 (505)
Q Consensus 123 ~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~ 156 (505)
+|+.|+|++|.|+.+|. .+..+++|++|+|.+|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 34444444444444433 23444445555555444
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=89.42 E-value=0.21 Score=51.32 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhccccccccccccCcEEeehhhHHHHHHHHh
Q 037920 6 ARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAILIAS 47 (505)
Q Consensus 6 ~~~~~~~~~Li~~~l~~~~~~~~~~~~~mHdli~dla~~~~~ 47 (505)
..+.+++++|++++|++...++...+|+|||++|++++....
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 467899999999999997665455689999999999988743
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=83.89 E-value=0.56 Score=50.84 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhccccccccccccCcEEeehhhHHHHH
Q 037920 6 ARVHALVHKLKASCMLLNHISQKKELFSMHDVVRDVAI 43 (505)
Q Consensus 6 ~~~~~~~~~Li~~~l~~~~~~~~~~~~~mHdli~dla~ 43 (505)
+.+.+++++|+++|||+... +..+|+|||++++++.
T Consensus 402 edAe~~L~eLvdRSLLq~d~--~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQP--KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCS--SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEeC--CCCEEEehHHHHHHhc
Confidence 46889999999999999853 3678999999999763
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.70 E-value=59 Score=23.92 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=20.0
Q ss_pred ccccChhHHhCCCCccEEEEeCCcCccCc-ccccCCCCCCeeEee
Q 037920 110 SLTIPNKFFERMMQVRVINLTNINLMSLP-SSLGLLSNLRTLSLD 153 (505)
Q Consensus 110 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~ 153 (505)
...+....|.++.+|+.+.+..+ ++.+. ..|.++.+|+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 33444444555555555555543 22222 234445555555544
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.06 E-value=69 Score=23.56 Aligned_cols=45 Identities=7% Similarity=0.072 Sum_probs=30.6
Q ss_pred CccCCCC--CCCCCccEEEeeecCCCCccccChhHHhCCCCccEEEEeCCc
Q 037920 85 TNLLPEV--VESPQLKLLFICADQESSSLTIPNKFFERMMQVRVINLTNIN 133 (505)
Q Consensus 85 ~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 133 (505)
++.+... .+|.+|+++.+ . .....+....|.+|.+|+.+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~i--P--~~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITV--Q--PNIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEE--C--TTSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred cCEecHHHhcCCCCCcEEEc--C--CchheEcHHHHhccCCccEEEEcCCC
Confidence 3444433 27888888888 3 23456666778888888888887653
Done!