BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037922
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 160/361 (44%), Gaps = 80/361 (22%)
Query: 5 GMQNWEGLLDPLDDNLRGEILRYGDFVEAAYKSFDFDPSSPSYATCRFPKNTLLDRSGTN 64
G +W+G L PLD +LR I+ YG+ +A Y +F+ + S + + + G
Sbjct: 28 GQNHWKGXLQPLDQDLREYIIHYGEXAQAGYDTFNINTESQFAGASIYSRKDFFAKVGLE 87
Query: 65 LPRWWIE-KAPSWV----------------------ATQSSWIGYVAVCQDQEVISRLGR 101
+ + + K ++ + +S+W GYVAV DQ + LGR
Sbjct: 88 IAHPYTKYKVTKFIYATSDIHVPESFLLFPISREGWSKESNWXGYVAVTDDQGT-ALLGR 146
Query: 102 RDVVIALRGTATCLEWLENLRATLTRLPGPGTDGSVFGP-----MVESGFLSLYTSKTAS 156
RD+V++ RG+ LEW+E+ L +FG + G+ S+Y S+
Sbjct: 147 RDIVVSWRGSVQPLEWVEDFEFGLVNAI------KIFGERNDQVQIHQGWYSIYXSQDER 200
Query: 157 CPSLQEMLRE----EIKRLLQTYGDEPLSLTITGHSLGAALATLAAYDIKTHFNGSPMA- 211
P + R+ E+ RLL+ Y DE +S+TI GHSLGAALATL+A DI + P +
Sbjct: 201 SPFTKTNARDQVLREVGRLLEKYKDEEVSITICGHSLGAALATLSATDIVANGYNRPKSR 260
Query: 212 -------TVFSFGGPRVGNKCFRQQLE-VQGTKVLRIVNSDDLITKVPGFVMDQGNDVAD 263
T F F PRVG+ FR+ ++ +VLR N D+I P
Sbjct: 261 PDKSCPVTAFVFASPRVGDSDFRKLFSGLEDIRVLRTRNLPDVIPIYPPI---------- 310
Query: 264 AHLAAHRLPGWIQKCVEDAQWAYAEVGRELRLSSKDSPHLSSI-NVAICHDLKTYLHLVE 322
Y+EVG E + ++ SP+ S N+A H L+ YLH V
Sbjct: 311 ---------------------GYSEVGDEFPIDTRKSPYXKSPGNLATFHCLEGYLHGVA 349
Query: 323 G 323
G
Sbjct: 350 G 350
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 18/149 (12%)
Query: 104 VVIALRGTATCLEWLENLRATLTRLPGPGTDGSVFGPMVESGFLSLYTSKTASCPSLQEM 163
+V++ RG+ + W+ NL L + + G GF T+S S+ +
Sbjct: 76 IVLSFRGSRSIENWIGNLNFDLKEI-----NDICSGCRGHDGF-------TSSWRSVADT 123
Query: 164 LREEIKRLLQTYGDEPLSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSFGGPRVGN 223
LR++++ ++ + D + TGHSLG ALAT+A D++ NG + VFS+G PRVGN
Sbjct: 124 LRQKVEDAVREHPD--YRVVFTGHSLGGALATVAGADLRG--NGYDI-DVFSYGAPRVGN 178
Query: 224 KCFRQQLEVQ-GTKVLRIVNSDDLITKVP 251
+ F + L VQ G + RI +++D++ ++P
Sbjct: 179 RAFAEFLTVQTGGTLYRITHTNDIVPRLP 207
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 18/149 (12%)
Query: 104 VVIALRGTATCLEWLENLRATLTRLPGPGTDGSVFGPMVESGFLSLYTSKTASCPSLQEM 163
+V++ RG+ + W+ NL L + + G GF T+S S+ +
Sbjct: 76 IVLSFRGSRSIENWIGNLNFDLKEI-----NDICSGCRGHDGF-------TSSWRSVADT 123
Query: 164 LREEIKRLLQTYGDEPLSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSFGGPRVGN 223
LR++++ ++ + D + TGH+LG ALAT+A D++ NG + VFS+G PRVGN
Sbjct: 124 LRQKVEDAVREHPD--YRVVFTGHALGGALATVAGADLRG--NGYDI-DVFSYGAPRVGN 178
Query: 224 KCFRQQLEVQ-GTKVLRIVNSDDLITKVP 251
+ F + L VQ G + RI +++D++ ++P
Sbjct: 179 RAFAEFLTVQTGGTLYRITHTNDIVPRLP 207
>pdb|1TIA|A Chain A, An Unusual Buried Polar Cluster In A Family Of Fungal
Lipases
Length = 279
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 30/173 (17%)
Query: 85 GYVAVCQDQEVISRLGRRDVVIALRGTATCLEWLENLRATLTRLPGPGTDGSVFGPMVES 144
GY+AV VV+A RG+ + W+ + T G G + E
Sbjct: 65 GYIAVDHTNSA--------VVLAFRGSYSVRNWVADATFVHTN------PGLCDGCLAEL 110
Query: 145 GFLSLYTSKTASCPSLQEMLREEI-KRLLQTYGDEP-LSLTITGHSLGAALATLAAYDIK 202
GF S + +++R++I K L + P L + GHSLGAA+ATLAA D++
Sbjct: 111 GFWSSW-----------KLVRDDIIKELKEVVAQNPNYELVVVGHSLGAAVATLAATDLR 159
Query: 203 THFNGSPMATVFSFGGPRVGNKCFRQQLEVQGTKVLRIVNSDDLITKVPGFVM 255
G P A ++++ PRVGN + + QG R +++D + K+P M
Sbjct: 160 G--KGYPSAKLYAYASPRVGNAALAKYITAQGNN-FRFTHTNDPVPKLPLLSM 209
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 74/190 (38%), Gaps = 28/190 (14%)
Query: 101 RRDVVIALRGTATCLEWLENLRATLTRLPGPGTDGSVFGPMVESGFLSLYTSKTASCPSL 160
+ + I RG+++ W+ +L P V G V GFL Y
Sbjct: 72 EKTIYIVFRGSSSIRNWIADLTFVPVSYP------PVSGTKVHKGFLDSY---------- 115
Query: 161 QEMLREEIKRLLQTYGDEP-LSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSF--G 217
E+ E + +L + P + +TGHSLG A A L A D+ G + +F + G
Sbjct: 116 GEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQG 175
Query: 218 GPRVGNKCFRQQLEVQGTKVLRIVNSDDLITKVP----GFVMDQGNDVADAHLAAHRLPG 273
PRVGN F + G R VN D++ +P GF+ + P
Sbjct: 176 QPRVGNPAFANYVVSTGIPYRRTVNERDIVPHLPPAAFGFL-----HAGSEYWITDNSPE 230
Query: 274 WIQKCVEDAQ 283
+Q C D +
Sbjct: 231 TVQVCTSDLE 240
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 74/190 (38%), Gaps = 28/190 (14%)
Query: 101 RRDVVIALRGTATCLEWLENLRATLTRLPGPGTDGSVFGPMVESGFLSLYTSKTASCPSL 160
+ + I RG+++ W+ +L P V G V GFL Y
Sbjct: 72 EKTIYIVFRGSSSIRNWIADLTFVPVSYP------PVSGTKVHKGFLDSY---------- 115
Query: 161 QEMLREEIKRLLQTYGDEP-LSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSF--G 217
E+ E + +L + P + +TGHSLG A A L A D+ G + +F + G
Sbjct: 116 GEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQG 175
Query: 218 GPRVGNKCFRQQLEVQGTKVLRIVNSDDLITKVP----GFVMDQGNDVADAHLAAHRLPG 273
PRVGN F + G R VN D++ +P GF+ + P
Sbjct: 176 QPRVGNPAFANYVVSTGIPYRRTVNERDIVPHLPPAAFGFL-----HAGSEYWITDNSPE 230
Query: 274 WIQKCVEDAQ 283
+Q C D +
Sbjct: 231 TVQVCTSDLE 240
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 74/190 (38%), Gaps = 28/190 (14%)
Query: 101 RRDVVIALRGTATCLEWLENLRATLTRLPGPGTDGSVFGPMVESGFLSLYTSKTASCPSL 160
+ + I RG+++ W+ +L P V G V GFL Y
Sbjct: 72 EKTIYIVFRGSSSIRNWIADLTFVPVSYP------PVSGTKVHKGFLDSY---------- 115
Query: 161 QEMLREEIKRLLQTYGDEP-LSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSF--G 217
E+ E + +L + P + +TGHSLG A A L A D+ G + +F + G
Sbjct: 116 GEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQG 175
Query: 218 GPRVGNKCFRQQLEVQGTKVLRIVNSDDLITKVP----GFVMDQGNDVADAHLAAHRLPG 273
PRVGN F + G R VN D++ +P GF+ + P
Sbjct: 176 QPRVGNPAFANYVVSTGIPYRRTVNERDIVPHLPPAAFGFL-----HAGSEYWITDNSPE 230
Query: 274 WIQKCVEDAQ 283
+Q C D +
Sbjct: 231 TVQVCTSDLE 240
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 74/190 (38%), Gaps = 28/190 (14%)
Query: 101 RRDVVIALRGTATCLEWLENLRATLTRLPGPGTDGSVFGPMVESGFLSLYTSKTASCPSL 160
+ + I RG+++ W+ +L P V G V GFL Y
Sbjct: 72 EKTIYIVFRGSSSIRNWIADLTFVPVSYP------PVSGTKVHKGFLDSY---------- 115
Query: 161 QEMLREEIKRLLQTYGDEP-LSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSF--G 217
E+ E + +L + P + +TGHSLG A L A D+ G + +F + G
Sbjct: 116 GEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATVLLCALDLYQREEGLSSSNLFLYTQG 175
Query: 218 GPRVGNKCFRQQLEVQGTKVLRIVNSDDLITKVP----GFVMDQGNDVADAHLAAHRLPG 273
PRVG+ F + G R VN D++ +P GF+ + + P
Sbjct: 176 QPRVGDPAFANYVVSTGIPYRRTVNERDIVPHLPPAAFGFL-----HAGEEYWITDNSPE 230
Query: 274 WIQKCVEDAQ 283
+Q C D +
Sbjct: 231 TVQVCTSDLE 240
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 23/191 (12%)
Query: 67 RWWIEKAPSWVATQSSWIGYVAVCQDQE--VISRLGRRDVVIALRGTATCLEWLENLRAT 124
+W + WV + ++ D V+ ++ + + RGT + R+
Sbjct: 37 KWDCVQCQKWVPDGKIITTFTSLLSDTNGYVLRSDKQKTIYLVFRGT-------NSFRSA 89
Query: 125 LTRLPGPGTD-GSVFGPMVESGFLSLYTSKTAS-CPSLQEMLREEIKRLLQTYGDEPLSL 182
+T + +D V G V +GFLS Y P +QE L TY +
Sbjct: 90 ITDIVFNFSDYKPVKGAKVHAGFLSSYEQVVNDYFPVVQEQLTAH-----PTY-----KV 139
Query: 183 TITGHSLGAALATLAAYDI-KTHFNGSPMA-TVFSFGGPRVGNKCFRQQLEVQGTKVLRI 240
+TGHSLG A A LA D+ + SP ++F+ GGPRVGN F +E G R
Sbjct: 140 IVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIFTVGGPRVGNPTFAYYVESTGIPFQRT 199
Query: 241 VNSDDLITKVP 251
V+ D++ VP
Sbjct: 200 VHKRDIVPHVP 210
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 41/227 (18%)
Query: 38 FDFDPSSPSYATCRFPKNTLLDRSGTNLPRWWIEKA---PSWVATQSSWIGYVAVCQDQE 94
F + +Y P + SG P A S+ +++ GYVA
Sbjct: 14 FYIQHGAAAYCNSEAPAGAKVTCSGNGCPTVQSNGATIVASFTGSKTGIGGYVA------ 67
Query: 95 VISRLGRRDVVIALRGTATCLEWLENLR-----ATLTRLPGPGTDGSVFGPMVESGFLSL 149
+ R+++V++ RG+ WL NL +LT G V SGF +
Sbjct: 68 --TDPTRKEIVVSFRGSINIRNWLTNLDFDQDDCSLTS-----------GCGVHSGFQNA 114
Query: 150 YTSKTASCPSLQEMLREEIKRLLQTYGDEP-LSLTITGHSLGAALATLAAYDIKTHFNGS 208
+ E+ + + P + GHSLG A+ATLA +++ G+
Sbjct: 115 W----------NEISAAATAAVAKARKANPSFKVVSVGHSLGGAVATLAGANLR--IGGT 162
Query: 209 PMATVFSFGGPRVGNKCFRQQLEVQGTKVLRIVNSDDLITKVPGFVM 255
P+ ++++G PRVGN + Q R+ N+ D + ++P +
Sbjct: 163 PL-DIYTYGSPRVGNTQLAAFVSNQAGGEFRVTNAKDPVPRLPPLIF 208
>pdb|1USW|A Chain A, Crystal Structure Of Ferulic Acid Esterase From
Aspergillus Niger
Length = 260
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 159 SLQEMLREEIKRLLQTYGDEPLSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSFGG 218
S+Q+ + +K+ Y D +LT+TGHSLGA++A L A + ++ +++FG
Sbjct: 106 SVQDQVESLVKQQASQYPD--YALTVTGHSLGASMAALTAAQLSATYDN---VRLYTFGE 160
Query: 219 PRVGNKCFRQQLE-------VQGTKVLRIVNSDDLITKVP 251
PR GN+ F + + T+ R+ +S+D I +P
Sbjct: 161 PRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 159 SLQEMLREEIKRLLQTYGDEPLSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSFGG 218
S+Q+ + +K+ Y D +LT+TGHSLGA++A L A + ++ +++FG
Sbjct: 106 SVQDQVESLVKQQASQYPD--YALTVTGHSLGASMAALTAAQLSATYDN---VRLYTFGE 160
Query: 219 PRVGNKCFRQQLE-------VQGTKVLRIVNSDDLITKVP 251
PR GN+ F + + T+ R+ +S+D I +P
Sbjct: 161 PRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 159 SLQEMLREEIKRLLQTYGDEPLSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSFGG 218
S+Q+ + +K+ Y D +LT+TGHSLGA++A L A + ++ +++FG
Sbjct: 106 SVQDQVESLVKQQASQYPD--YALTVTGHSLGASMAALTAAQLSATYDN---VRLYTFGE 160
Query: 219 PRVGNKCFRQQLE-------VQGTKVLRIVNSDDLITKVP 251
PR GN+ F + + T+ R+ +S+D I +P
Sbjct: 161 PRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|2BJH|A Chain A, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|B Chain B, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|C Chain C, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
Length = 260
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 159 SLQEMLREEIKRLLQTYGDEPLSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSFGG 218
S+Q+ + +K+ Y D +LT+TGH+LGA++A L A + ++ +++FG
Sbjct: 106 SVQDQVESLVKQQASQYPD--YALTVTGHALGASMAALTAAQLSATYDN---VRLYTFGE 160
Query: 219 PRVGNKCFRQQLE-------VQGTKVLRIVNSDDLITKVP 251
PR GN+ F + + T+ R+ +S+D I +P
Sbjct: 161 PRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|3UUF|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 278
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 182 LTITGHSLGAALATLAAYDIKTHFNGSPMATVFSFGGPRVGNKCFRQQLEVQ-GTKVLRI 240
+T+ GHSLGAA+ L A DI+ +G + + FG PR+GN F ++ + G K I
Sbjct: 139 VTVIGHSLGAAMGLLCAMDIELRMDGG-LYKTYLFGLPRLGNPTFASFVDQKIGDKFHSI 197
Query: 241 VNSDDLITKVP 251
+N D + VP
Sbjct: 198 INGRDWVPTVP 208
>pdb|3UUE|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 279
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 182 LTITGHSLGAALATLAAYDIKTHFNGSPMATVFSFGGPRVGNKCFRQQLEVQ-GTKVLRI 240
+T+ GHSLGAA+ L A DI+ +G + + FG PR+GN F ++ + G K I
Sbjct: 140 VTVIGHSLGAAMGLLCAMDIELRMDGG-LYKTYLFGLPRLGNPTFASFVDQKIGDKFHSI 198
Query: 241 VNSDDLITKVP 251
+N D + VP
Sbjct: 199 INGRDWVPTVP 209
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 34/171 (19%)
Query: 102 RDVVIALRGTATCLEWLENLR---ATLTRL---PGPGTDGSVFGPMVESGFLSLYTSKTA 155
+ + + +RGT + + + ++R A LT + + +V +GF+ Y +
Sbjct: 79 KQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNNTY- 137
Query: 156 SCPSLQEMLREEIKRLLQTYGDEPLSLTITGHSLGAALATLAAYDIKTHFNG-SPMATVF 214
+ ++ +++ Y D + +TGHSLG A A L ++K NG P+ V
Sbjct: 138 ------NQIGPKLDSVIEQYPD--YQIAVTGHSLGGAAALLFGINLKV--NGHDPL--VV 185
Query: 215 SFGGPRVGNKCFRQQLE--------------VQGTKVLRIVNSDDLITKVP 251
+ G P VGN F ++ + K+ RI + D++ +VP
Sbjct: 186 TLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVP 236
>pdb|2E5A|A Chain A, Crystal Structure Of Bovine Lipoyltransferase In Complex
With Lipoyl-Amp
pdb|3A7U|A Chain A, Crystal Structure Of The Bovine Lipoyltransferase In Its
Unliganded Form
Length = 347
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Query: 132 GTDGSVFGPMVESGFLSLYTSKTASCPSLQEMLREEIKRLLQTYGDEPLSLTITGHSLGA 191
GTDG+ +++S + + ++ TAS P+L + L E+ D L+ + +++
Sbjct: 157 GTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEK---------DPTLTCEVVINAVAT 207
Query: 192 ALATLAAYDIKTHFNGSPMATVFSFGGPRVGNKCFRQQ 229
AT D H TVF P + +K Q
Sbjct: 208 EYATSHQIDNHIHLINPTDETVF----PGINSKAIELQ 241
>pdb|3TTO|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|B Chain B, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|C Chain C, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|D Chain D, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTQ|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Orthorhombic Apo-Form At 1.9 Angstrom Resolution
Length = 1108
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 303 LSSINVAICHDLKTYLHLVEGFVSSTCPFKATASARTRRVLKNETTQRERERDRVR 358
S+ NVA HD ++ H V+GF+++ + R + +L N TT R+ +R
Sbjct: 230 FSTKNVAFNHDSSSFDHTVDGFLTADTWY------RPKSILANGTTWRDSTDKDMR 279
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 164 LREEIKRLLQTYGDEP-LSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSFGGPRVG 222
+R+ ++ + D P L + + GHS+G A+A L A + HF G + + P
Sbjct: 114 VRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESA 173
Query: 223 NKCFRQQLEVQGTKVLRIV 241
+V KVL +V
Sbjct: 174 TT-----FKVLAAKVLNLV 187
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 163 MLREEIKRLLQTYGDEP-LSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSFGGPRV 221
+R+ ++ + D P L + + GHS+G A+A L A + HF G + + P
Sbjct: 114 FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPES 173
Query: 222 GNKCFRQQLEVQGTKVLRIV 241
+V KVL +V
Sbjct: 174 ATT-----FKVLAAKVLNLV 188
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 167 EIKRLLQTYGDEPLSLTITGHSLGAALATLAA 198
+I R++Q D+PL L GHS+GA LAT A
Sbjct: 84 QIDRVIQELPDQPLLLV--GHSMGAMLATAIA 113
>pdb|3G7N|A Chain A, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
pdb|3G7N|B Chain B, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
Length = 258
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 101 RRDVVIALRGTATCLEWLENLRATLTRLPGPGTDGSVFGPMVESGFLSLYTSKTASCPSL 160
++ + + +RG+ T +++ ++ L P G F V+ + ++
Sbjct: 55 KKTIAVIMRGSTTITDFVNDIDIALIT---PELSGVTFPSDVK-----IMRGVHRPWSAV 106
Query: 161 QEMLREEIKRLLQTYGDEPLSLTITGHSLGAALATLAAYDIKTHF 205
+ + E+K L+ Y D +L GHSLG AL ++A + +F
Sbjct: 107 HDTIITEVKALIAKYPD--YTLEAVGHSLGGALTSIAHVALAQNF 149
>pdb|1Q5D|A Chain A, Epothilone B-Bound Cytochrome P450epok
pdb|1Q5E|A Chain A, Substrate-Free Cytochrome P450epok
Length = 419
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 37 SFDFDPSSPSYATCRFPKNTLLDRSGTNLPRWWIEKAPSWVATQSSWIGYVAVCQDQ 93
+FDF P +P YA FP ++R P ++ ++ SWV T+ + AV +D+
Sbjct: 14 AFDFKPFAPGYAEDPFPA---IERLREATPIFYWDEGRSWVLTRYHDVS--AVFRDE 65
>pdb|1PKF|A Chain A, Crystal Structure Of Epothilone D-Bound Cytochrome
P450epok
Length = 419
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 37 SFDFDPSSPSYATCRFPKNTLLDRSGTNLPRWWIEKAPSWVATQSSWIGYVAVCQDQ 93
+FDF P +P YA FP ++R P ++ ++ SWV T+ + AV +D+
Sbjct: 14 AFDFKPFAPGYAEDPFPA---IERLREATPIFYWDEGRSWVLTRYHDVS--AVFRDE 65
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 163 MLREEIKRLLQTYGDEP-LSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSFGGPRV 221
+R+ ++ + D P L + + GHS G A+A L A + HF G + + P
Sbjct: 113 FVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLVLANPES 172
Query: 222 GNKCFRQQLEVQGTKVLRIV 241
+V KVL +V
Sbjct: 173 ATT-----FKVLAAKVLNLV 187
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 163 MLREEIKRLLQTYGDEP-LSLTITGHSLGAALATLAAYDIKTHFNGSPMATVFSFGGP 219
+R+ ++ + D P L + + GHS+G A+A L A + HF G + + P
Sbjct: 96 FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANP 153
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 111 TATCLEWLENLRATLTRLPGPGTDGSVFGPMVESGFLSLYTSKTASCPSLQEMLREEIK 169
TAT L+ + L RLPG G P +E+G L + K P L+ M+R I+
Sbjct: 604 TATVLDASTSGVRLLVRLPGVGDPH----PALEAGGLIQFQPKFPDAPQLERMVRGRIR 658
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,032,913
Number of Sequences: 62578
Number of extensions: 458853
Number of successful extensions: 1041
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1005
Number of HSP's gapped (non-prelim): 31
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)