BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037923
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RKN|A Chain A, X-Ray Structure Of The Self-Defense And Signaling
Protein Dir1 From Arabidopsis Taliana
Length = 77
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 13/68 (19%)
Query: 35 CTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTV------------RIAA 82
C LN C P V T+PS CC ALQ D C C +A+
Sbjct: 5 CGMSQDELNECKP-AVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELAS 63
Query: 83 RLPSQCNL 90
LP QC L
Sbjct: 64 ALPKQCGL 71
>pdb|2LVF|A Chain A, Solution Structure Of The Brazil Nut 2s Albumin Ber E 1
Length = 114
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 23/69 (33%)
Query: 50 VPGVATTTPSSDCCAALQSVDRDCFCNTV-----------------------RIAARLPS 86
+P S+CC L+ +D C C + R+A +PS
Sbjct: 37 MPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPS 96
Query: 87 QCNLPPLSC 95
+CNL P+ C
Sbjct: 97 RCNLSPMRC 105
>pdb|1BIP|A Chain A, Bifunctional Proteinase Inhibitor TrypsinA-Amylase From
Seeds Of Ragi (Eleusine Coracana Gaertneri)
Length = 122
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 42 LNSCAPYV-------VPGVATTTPSSDCCAALQSVDRDCFCNTVRI 80
L+SC YV P +AT + CC L+++ C C VRI
Sbjct: 17 LDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAIPAYCRCEAVRI 62
>pdb|1TMQ|B Chain B, Structure Of Tenebrio Molitor Larval Alpha-Amylase In
Complex With Ragi Bifunctional Inhibitor
Length = 117
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 42 LNSCAPYV-------VPGVATTTPSSDCCAALQSVDRDCFCNTVRI 80
L+SC YV P +AT + CC L+++ C C VRI
Sbjct: 17 LDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAIPAYCRCEAVRI 62
>pdb|1B1U|A Chain A, Crystal Structure Of The Bifunctional Inhibitor Ragi
Length = 122
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 42 LNSCAPYV-------VPGVATTTPSSDCCAALQSVDRDCFCNTVRI 80
L+SC YV P +AT + CC L+++ C C VRI
Sbjct: 17 LDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAIPAYCRCEAVRI 62
>pdb|3VYR|B Chain B, Crystal Structure Of The Hypc-Hypd Complex
pdb|3VYS|B Chain B, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form I)
pdb|3VYT|B Chain B, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form I
Inward)
pdb|3VYU|B Chain B, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form Ii)
Length = 372
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 66 LQSVDRDCFCNTVRIAARLPSQCNLPPLSCTP 97
L +++ C C V LP+ C L +CTP
Sbjct: 316 LPDLEKGCRCGAVLRGLALPTDCPLFGKTCTP 347
>pdb|2Z1D|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation
Protein, Hypd From Thermococcus Kodakaraensis
pdb|2Z1D|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation
Protein, Hypd From Thermococcus Kodakaraensis
Length = 372
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 66 LQSVDRDCFCNTVRIAARLPSQCNLPPLSCTP 97
L +++ C C V LP+ C L +CTP
Sbjct: 316 LPDLEKGCRCGAVLRGLALPTDCPLFGKTCTP 347
>pdb|1S6D|A Chain A, Structure In Solution Of A Methionine-Rich 2s Albumin
Protein From Sunflower Seed
Length = 103
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 27/81 (33%)
Query: 37 SELTNLNSCAPYVV----------PGVATTTPSSDCCAALQSVDRDCFC----------- 75
E LN C Y++ P + CC L+++D C C
Sbjct: 16 EEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPM 75
Query: 76 ------NTVRIAARLPSQCNL 90
+ +A LP +CNL
Sbjct: 76 WIRMRDQVMSMAHNLPIECNL 96
>pdb|2DS2|B Chain B, Crystal Structure Of Mabinlin Ii
pdb|2DS2|D Chain D, Crystal Structure Of Mabinlin Ii
Length = 72
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 60 SDCCAALQSVDRDCFCNTVRIAA 82
CC L+ VDR C C +R AA
Sbjct: 8 RQCCNQLRQVDRPCVCPVLRQAA 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.123 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,924,655
Number of Sequences: 62578
Number of extensions: 51352
Number of successful extensions: 96
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 11
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)