Query 037923
Match_columns 97
No_of_seqs 140 out of 1011
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:45:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04660 nsLTP_like nsLTP_like: 99.5 5.5E-15 1.2E-19 89.9 2.7 59 35-93 1-69 (73)
2 cd01959 nsLTP2 nsLTP2: Non-spe 99.4 2.7E-13 5.9E-18 81.3 3.3 52 40-95 4-66 (66)
3 PF14368 LTP_2: Probable lipid 99.3 1.6E-13 3.5E-18 85.9 0.0 64 27-93 14-92 (96)
4 cd01960 nsLTP1 nsLTP1: Non-spe 99.2 4.1E-12 9E-17 79.5 2.1 57 34-92 2-78 (89)
5 cd00010 AAI_LTSS AAI_LTSS: Alp 99.1 2.3E-11 4.9E-16 71.3 2.3 47 42-90 1-63 (63)
6 smart00499 AAI Plant lipid tra 99.1 8.9E-11 1.9E-15 70.0 3.8 59 35-93 1-75 (79)
7 PF00234 Tryp_alpha_amyl: Prot 99.0 2.5E-11 5.5E-16 75.5 -2.9 53 40-94 13-87 (90)
8 cd00261 AAI_SS AAI_SS: Alpha-A 97.3 0.00021 4.6E-09 45.8 2.7 57 40-96 13-109 (110)
9 PF07172 GRP: Glycine rich pro 89.9 0.32 6.8E-06 30.9 2.4 6 1-7 1-6 (95)
10 PF14547 Hydrophob_seed: Hydro 75.9 1.4 3E-05 27.5 0.9 58 35-92 2-78 (85)
11 PF05617 Prolamin_like: Prolam 62.5 5.2 0.00011 23.2 1.4 21 56-76 26-46 (70)
12 cd01958 HPS_like HPS_like: Hyd 59.8 5.3 0.00011 25.0 1.1 45 34-78 3-53 (85)
13 PF04202 Mfp-3: Foot protein 3 56.3 10 0.00022 22.8 1.9 15 9-23 3-17 (71)
14 PLN00214 putative protein; Pro 56.1 3.4 7.3E-05 27.3 -0.2 23 56-78 59-81 (115)
15 PF13016 Gliadin: Cys-rich Gli 55.0 7.7 0.00017 23.8 1.3 41 40-80 13-70 (77)
16 PRK10040 hypothetical protein; 26.4 62 0.0013 18.3 1.8 20 28-47 14-33 (52)
17 PF15240 Pro-rich: Proline-ric 22.4 78 0.0017 22.4 2.1 9 16-24 6-14 (179)
18 PF05279 Asp-B-Hydro_N: Aspart 21.3 1E+02 0.0022 22.8 2.7 17 5-21 10-26 (243)
19 PTZ00459 mucin-associated surf 21.1 73 0.0016 24.0 1.9 19 1-20 1-19 (291)
20 COG0409 HypD Hydrogenase matur 21.1 60 0.0013 25.4 1.5 28 70-97 312-339 (364)
21 PF09680 Tiny_TM_bacill: Prote 20.6 1.1E+02 0.0023 14.7 1.7 9 12-20 8-16 (24)
No 1
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.52 E-value=5.5e-15 Score=89.87 Aligned_cols=59 Identities=39% Similarity=0.812 Sum_probs=50.3
Q ss_pred chhhccCccCchhhhcCCCCCCCCChhHHHHHhcCCCCccchh----------hHHHhhccccCCCCCC
Q 037923 35 CTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNT----------VRIAARLPSQCNLPPL 93 (97)
Q Consensus 35 C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~~~ClC~~----------~~~a~~LP~~Cgv~~~ 93 (97)
|+.++..|.+|++|+++++++.+|+.+||+++++++..|+|.+ .++|++||++||++.+
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p 69 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP 69 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCCcCCEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence 6677778899999999874445799999999999998999975 2689999999999855
No 2
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.39 E-value=2.7e-13 Score=81.34 Aligned_cols=52 Identities=33% Similarity=0.835 Sum_probs=46.6
Q ss_pred cCccCchhhhcCCCCCCCCChhHHHHHhcCCCCccchhh-----------HHHhhccccCCCCCCCC
Q 037923 40 TNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTV-----------RIAARLPSQCNLPPLSC 95 (97)
Q Consensus 40 ~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~~~ClC~~~-----------~~a~~LP~~Cgv~~~~C 95 (97)
.+|.+|++|++++ .+||.+||+.|++.+ .|+|+|+ .+|+.||++||++.|+|
T Consensus 4 ~~L~~C~~ai~~~---~~Ps~~CC~~Lk~~~-~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P~C 66 (66)
T cd01959 4 TQLSPCLPAILGG---SPPSAACCAKLKEQQ-SCLCQYAKNPSLKQYVNSPNARKVLAACGVPYPNC 66 (66)
T ss_pred hhcccCHHHHhCC---CCCCHHHHHHHhcCC-CCeeeeecCccHHhhcCcHHHHHHHHHcCCCCCCC
Confidence 4789999999976 689999999999966 8999873 47999999999999988
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.33 E-value=1.6e-13 Score=85.94 Aligned_cols=64 Identities=38% Similarity=0.736 Sum_probs=39.5
Q ss_pred hcccccCCchhhccCccCchhhhcCCCCCCCCChhHHHHHhcC---CCCccchh------------hHHHhhccccCCCC
Q 037923 27 TQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSV---DRDCFCNT------------VRIAARLPSQCNLP 91 (97)
Q Consensus 27 ~~~~~~~~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~---~~~ClC~~------------~~~a~~LP~~Cgv~ 91 (97)
.++....+|.+++....+|+.|+.++ ..|+++||++++++ +..|+|++ .+++..||++||++
T Consensus 14 ~~~~~~~~c~~~l~~c~~~~~~~~~~---~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~ 90 (96)
T PF14368_consen 14 PAAACCCSCANSLLPCCPCLCYVTGG---PAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVP 90 (96)
T ss_dssp ----BTTB-HCCCCHH--HHHHHCC--------HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS
T ss_pred cCCCCcchhHHHHhccccchhccCCC---CCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCC
Confidence 34455567765433333448888854 79999999999996 78999975 26999999999998
Q ss_pred CC
Q 037923 92 PL 93 (97)
Q Consensus 92 ~~ 93 (97)
.+
T Consensus 91 ~~ 92 (96)
T PF14368_consen 91 VP 92 (96)
T ss_dssp -S
T ss_pred CC
Confidence 55
No 4
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.23 E-value=4.1e-12 Score=79.52 Aligned_cols=57 Identities=33% Similarity=0.713 Sum_probs=46.9
Q ss_pred CchhhccCccCchhhhcCCCCCCCCChhHHHHHhcCC--------C--Cccchh----------hHHHhhccccCCCCC
Q 037923 34 SCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVD--------R--DCFCNT----------VRIAARLPSQCNLPP 92 (97)
Q Consensus 34 ~C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~--------~--~ClC~~----------~~~a~~LP~~Cgv~~ 92 (97)
+|.++...|.+|++|+++++ ..|+++||+++++++ . .|+|.. .++|++||++||+..
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~--~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~ 78 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGG--PAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSI 78 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCC--CCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCC
Confidence 68999999999999999864 689999999999973 2 355521 379999999999984
No 5
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.14 E-value=2.3e-11 Score=71.34 Aligned_cols=47 Identities=45% Similarity=0.987 Sum_probs=40.2
Q ss_pred ccCchhhhcCCCCCCCCChhHHHHHhcC---CCCccchh-------------hHHHhhccccCCC
Q 037923 42 LNSCAPYVVPGVATTTPSSDCCAALQSV---DRDCFCNT-------------VRIAARLPSQCNL 90 (97)
Q Consensus 42 L~~C~~yv~~~~~~~~Ps~~CC~~l~~~---~~~ClC~~-------------~~~a~~LP~~Cgv 90 (97)
|.+|++|+++++ ..|+++||++++++ +..|+|.+ .++++.||++||+
T Consensus 1 L~~C~~y~~~~~--~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGA--TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCC--CCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 579999999764 68999999999998 46899974 2689999999996
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.10 E-value=8.9e-11 Score=69.96 Aligned_cols=59 Identities=36% Similarity=0.817 Sum_probs=49.5
Q ss_pred chhhccCccCchhhhcCCCCCCCCChhHHHHHhcC-CCCccchh---------------hHHHhhccccCCCCCC
Q 037923 35 CTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSV-DRDCFCNT---------------VRIAARLPSQCNLPPL 93 (97)
Q Consensus 35 C~~~~~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~-~~~ClC~~---------------~~~a~~LP~~Cgv~~~ 93 (97)
|.+++..+.+|.+|++++.+...|+.+||++++.+ +..|+|.+ ..++.+||+.||+..+
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~ 75 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLNSAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPP 75 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhcccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCC
Confidence 56677777899999997533468999999999999 99999974 2578999999999976
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.95 E-value=2.5e-11 Score=75.46 Aligned_cols=53 Identities=38% Similarity=0.892 Sum_probs=45.9
Q ss_pred cCccCchhhhcCCCCCCCCChhHHHHHhcCCCCccchhh----------------------HHHhhccccCCCCCCC
Q 037923 40 TNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTV----------------------RIAARLPSQCNLPPLS 94 (97)
Q Consensus 40 ~~L~~C~~yv~~~~~~~~Ps~~CC~~l~~~~~~ClC~~~----------------------~~a~~LP~~Cgv~~~~ 94 (97)
..+.+|..|++++. ..|+.+||++|++++..|+|..+ .+|.+||+.||+.++.
T Consensus 13 ~~l~~c~~~~~~~~--~~~~~~CC~~L~~l~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~ 87 (90)
T PF00234_consen 13 VRLSPCLPYLQGGC--QQPSQQCCQQLRQLDPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPY 87 (90)
T ss_dssp SHHHGGHHHHTTSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSS
T ss_pred ccccccHHHHhccc--ccchHHHhHHHHHHhHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 45889999999763 47999999999999999999753 4799999999999875
No 8
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=97.29 E-value=0.00021 Score=45.81 Aligned_cols=57 Identities=33% Similarity=0.731 Sum_probs=43.5
Q ss_pred cCccCchhhhcCCC-C-----------CCCCChhHHHHHhcCCCCccchhh---------------------------HH
Q 037923 40 TNLNSCAPYVVPGV-A-----------TTTPSSDCCAALQSVDRDCFCNTV---------------------------RI 80 (97)
Q Consensus 40 ~~L~~C~~yv~~~~-~-----------~~~Ps~~CC~~l~~~~~~ClC~~~---------------------------~~ 80 (97)
..|.+|..|+.... + .......||+.++.++..|.|..+ ..
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMRQA 92 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhCcHhhhHHHHHHHHHHHHHhhhccccccCcChHHHHHHH
Confidence 35789999987431 0 012247799999999999999753 37
Q ss_pred HhhccccCCCCC-CCCC
Q 037923 81 AARLPSQCNLPP-LSCT 96 (97)
Q Consensus 81 a~~LP~~Cgv~~-~~C~ 96 (97)
|.+||+.||+.+ +.|.
T Consensus 93 a~~Lp~~C~~~~~~~C~ 109 (110)
T cd00261 93 AQNLPSMCNLYPPPYCP 109 (110)
T ss_pred HHhhchhcCCCCCCCCC
Confidence 999999999997 7785
No 9
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=89.90 E-value=0.32 Score=30.95 Aligned_cols=6 Identities=50% Similarity=0.761 Sum_probs=4.0
Q ss_pred Cccchhh
Q 037923 1 MAAIKSM 7 (97)
Q Consensus 1 ma~~~~~ 7 (97)
||+ |++
T Consensus 1 MaS-K~~ 6 (95)
T PF07172_consen 1 MAS-KAF 6 (95)
T ss_pred Cch-hHH
Confidence 884 764
No 10
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=75.89 E-value=1.4 Score=27.50 Aligned_cols=58 Identities=19% Similarity=0.538 Sum_probs=36.4
Q ss_pred chhhccCccCchhhhcC-CC-CCCCCChhHHHHHhcCC----CCccchhhH-------------HHhhccccCCCCC
Q 037923 35 CTSELTNLNSCAPYVVP-GV-ATTTPSSDCCAALQSVD----RDCFCNTVR-------------IAARLPSQCNLPP 92 (97)
Q Consensus 35 C~~~~~~L~~C~~yv~~-~~-~~~~Ps~~CC~~l~~~~----~~ClC~~~~-------------~a~~LP~~Cgv~~ 92 (97)
|..+..+|..|.+.+.- +. ...++.++||.-++.+. ..|+|..++ ....|-..||-..
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~ 78 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTV 78 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcC
Confidence 44455567788887711 00 11357899999999983 269997542 3444556687663
No 11
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=62.53 E-value=5.2 Score=23.22 Aligned_cols=21 Identities=24% Similarity=0.749 Sum_probs=17.6
Q ss_pred CCCChhHHHHHhcCCCCccch
Q 037923 56 TTPSSDCCAALQSVDRDCFCN 76 (97)
Q Consensus 56 ~~Ps~~CC~~l~~~~~~ClC~ 76 (97)
...+++||+++..+...|.=.
T Consensus 26 ~~i~~~CC~~i~~~g~~C~~~ 46 (70)
T PF05617_consen 26 KNIGPECCKAINKMGKDCHPA 46 (70)
T ss_pred CCCChHHHHHHHHHhHhHHHH
Confidence 578899999999998888644
No 12
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=59.79 E-value=5.3 Score=24.98 Aligned_cols=45 Identities=20% Similarity=0.580 Sum_probs=29.0
Q ss_pred CchhhccCccCchhhhcCCC--CCCCCChhHHHHHhcCC----CCccchhh
Q 037923 34 SCTSELTNLNSCAPYVVPGV--ATTTPSSDCCAALQSVD----RDCFCNTV 78 (97)
Q Consensus 34 ~C~~~~~~L~~C~~yv~~~~--~~~~Ps~~CC~~l~~~~----~~ClC~~~ 78 (97)
.|..+..+|..|.+-+..-. ...+|.++||.-++.+. ..|+|..+
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtai 53 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAI 53 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeee
Confidence 45555555667777663210 11467799999999982 36999764
No 13
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=56.30 E-value=10 Score=22.75 Aligned_cols=15 Identities=40% Similarity=0.470 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHH
Q 037923 9 SLSTKAALLLLLIAV 23 (97)
Q Consensus 9 ~~~~~~~ll~~ll~~ 23 (97)
.|++.+++.++|+..
T Consensus 3 n~Si~VLlaLvLIg~ 17 (71)
T PF04202_consen 3 NLSIAVLLALVLIGS 17 (71)
T ss_pred chhHHHHHHHHHHhh
Confidence 346666666666544
No 14
>PLN00214 putative protein; Provisional
Probab=56.06 E-value=3.4 Score=27.25 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=17.4
Q ss_pred CCCChhHHHHHhcCCCCccchhh
Q 037923 56 TTPSSDCCAALQSVDRDCFCNTV 78 (97)
Q Consensus 56 ~~Ps~~CC~~l~~~~~~ClC~~~ 78 (97)
.+++.+||+.+-.....|.=.++
T Consensus 59 ~t~s~~CC~~LVk~GK~CH~~Li 81 (115)
T PLN00214 59 GTLIDPCCNDLVKEGKVCHDTLI 81 (115)
T ss_pred CCCchHHHHHHHHHhhHHHHHHH
Confidence 56799999998777777765543
No 15
>PF13016 Gliadin: Cys-rich Gliadin N-terminal
Probab=55.04 E-value=7.7 Score=23.80 Aligned_cols=41 Identities=17% Similarity=0.579 Sum_probs=28.9
Q ss_pred cCccCchhhhcCCCCC--C---------------CCChhHHHHHhcCCCCccchhhHH
Q 037923 40 TNLNSCAPYVVPGVAT--T---------------TPSSDCCAALQSVDRDCFCNTVRI 80 (97)
Q Consensus 40 ~~L~~C~~yv~~~~~~--~---------------~Ps~~CC~~l~~~~~~ClC~~~~~ 80 (97)
..|.||.+|+...-++ . .--.+||..++.+.+.|+|..|.+
T Consensus 13 qqL~pC~~fl~qQC~p~~~~p~~~s~~~q~ssCqv~qqQCCqQL~QIp~Q~RC~AI~~ 70 (77)
T PF13016_consen 13 QQLNPCKDFLLQQCSPVMAVPFLQSQMWQQSSCQVMQQQCCQQLRQIPEQSRCQAIHS 70 (77)
T ss_pred HHHHHHHHHHHHhcCCcccccchhhHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4577899998754211 0 112469999999999999998743
No 16
>PRK10040 hypothetical protein; Provisional
Probab=26.45 E-value=62 Score=18.27 Aligned_cols=20 Identities=10% Similarity=0.411 Sum_probs=15.3
Q ss_pred cccccCCchhhccCccCchh
Q 037923 28 QMTHSQSCTSELTNLNSCAP 47 (97)
Q Consensus 28 ~~~~~~~C~~~~~~L~~C~~ 47 (97)
+......|+.....+..|..
T Consensus 14 a~a~n~PCSG~KGGis~C~g 33 (52)
T PRK10040 14 ADAGNKPCSGKKGGISHCTG 33 (52)
T ss_pred HHhcCCCCCCCCCCcccccC
Confidence 45566789988888888874
No 17
>PF15240 Pro-rich: Proline-rich
Probab=22.35 E-value=78 Score=22.44 Aligned_cols=9 Identities=33% Similarity=0.541 Sum_probs=4.2
Q ss_pred HHHHHHHHh
Q 037923 16 LLLLLIAVA 24 (97)
Q Consensus 16 ll~~ll~~~ 24 (97)
|-|+|||++
T Consensus 6 LSvALLALS 14 (179)
T PF15240_consen 6 LSVALLALS 14 (179)
T ss_pred HHHHHHHhh
Confidence 334555553
No 18
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=21.28 E-value=1e+02 Score=22.83 Aligned_cols=17 Identities=24% Similarity=0.063 Sum_probs=10.6
Q ss_pred hhhhhHHHHHHHHHHHH
Q 037923 5 KSMVSLSTKAALLLLLI 21 (97)
Q Consensus 5 ~~~~~~~~~~~ll~~ll 21 (97)
-++.+|+++++|+.++-
T Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (243)
T PF05279_consen 10 SSFFTWFLVLALLGVWS 26 (243)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 36666777766666553
No 19
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=21.11 E-value=73 Score=23.96 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=9.4
Q ss_pred CccchhhhhHHHHHHHHHHH
Q 037923 1 MAAIKSMVSLSTKAALLLLL 20 (97)
Q Consensus 1 ma~~~~~~~~~~~~~ll~~l 20 (97)
||.|+. ....++|+|-|++
T Consensus 1 MaMmMT-GRVLLVCALCVLW 19 (291)
T PTZ00459 1 MAMMMT-GRVLLVCALCVLW 19 (291)
T ss_pred Cccchh-chHHHHHHHHHHh
Confidence 665432 1113666666655
No 20
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=21.11 E-value=60 Score=25.38 Aligned_cols=28 Identities=32% Similarity=0.794 Sum_probs=24.8
Q ss_pred CCCccchhhHHHhhccccCCCCCCCCCC
Q 037923 70 DRDCFCNTVRIAARLPSQCNLPPLSCTP 97 (97)
Q Consensus 70 ~~~ClC~~~~~a~~LP~~Cgv~~~~C~~ 97 (97)
+..|+|..+-|....|..|.+-...|+|
T Consensus 312 ~~~CiCg~ILrG~a~P~dCplFg~~CTP 339 (364)
T COG0409 312 DKACICGEILRGLAKPTDCPLFGKTCTP 339 (364)
T ss_pred CCceehhHHhhCCCCcccCccccCccCC
Confidence 3469999999999999999999888876
No 21
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.56 E-value=1.1e+02 Score=14.68 Aligned_cols=9 Identities=33% Similarity=0.504 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 037923 12 TKAALLLLL 20 (97)
Q Consensus 12 ~~~~ll~~l 20 (97)
..++|++++
T Consensus 8 livVLFILL 16 (24)
T PF09680_consen 8 LIVVLFILL 16 (24)
T ss_pred hHHHHHHHH
Confidence 333344433
Done!