Query 037924
Match_columns 158
No_of_seqs 107 out of 315
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:21:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uaf_A TTR-52; beta barrel/san 94.4 0.022 7.6E-07 41.3 2.8 52 23-84 3-57 (117)
2 3irp_X URO-adherence factor A; 93.8 0.23 8E-06 43.1 8.4 55 23-82 304-358 (429)
3 3e8v_A Possible transglutamina 93.3 0.23 7.7E-06 34.0 6.0 38 44-83 11-48 (82)
4 3kcp_A Cellulosomal-scaffoldin 90.4 0.26 9E-06 41.4 4.4 52 23-85 156-208 (321)
5 1uwy_A Carboxypeptidase M; met 84.7 0.84 2.9E-05 39.1 4.2 45 25-85 296-340 (426)
6 3mn8_A LP15968P; catalytic dom 84.4 1.1 3.9E-05 38.5 4.8 43 26-85 338-380 (435)
7 2boy_A 3-chlorocatechol 1,2-di 81.2 3.4 0.00011 33.5 6.2 49 24-82 102-160 (254)
8 1h8l_A Carboxypeptidase GP180 80.7 1.3 4.3E-05 37.2 3.7 44 25-85 301-344 (380)
9 2nsm_A Carboxypeptidase N cata 79.8 1.4 4.9E-05 37.7 3.8 43 25-85 321-363 (439)
10 2bum_A Protocatechuate 3,4-dio 78.2 3.2 0.00011 32.6 5.1 51 23-82 51-116 (209)
11 2xsu_A Catechol 1,2 dioxygenas 76.5 5.1 0.00017 33.4 6.1 49 24-82 136-194 (312)
12 3t63_M 3,4-PCD, protocatechuat 76.4 7.4 0.00025 31.2 6.8 51 23-82 76-140 (238)
13 1tmx_A Hydroxyquinol 1,2-dioxy 74.8 6.2 0.00021 32.6 6.1 49 24-82 133-190 (293)
14 3n9t_A PNPC; phospholipid bind 73.8 5.6 0.00019 32.8 5.6 49 24-82 129-187 (290)
15 2bum_B Protocatechuate 3,4-dio 73.2 8.2 0.00028 30.9 6.3 50 23-82 77-141 (241)
16 3th1_A Chlorocatechol 1,2-diox 73.0 6.8 0.00023 31.8 5.9 50 24-82 99-157 (260)
17 2azq_A Catechol 1,2-dioxygenas 71.8 8.4 0.00029 32.1 6.2 49 24-82 132-190 (311)
18 4ank_A Transthyretin; hormone 71.4 7.6 0.00026 28.9 5.3 36 44-80 41-76 (147)
19 3o5u_A Chlorocatechol 1,2-diox 68.8 8.3 0.00028 31.2 5.5 48 24-82 103-162 (257)
20 3hhy_A 1,2-CTD, catechol 1,2-d 68.0 9.8 0.00033 31.2 5.8 49 24-82 131-189 (280)
21 3t63_A 3,4-PCD, protocatechuat 66.3 11 0.00038 29.3 5.6 50 23-82 47-107 (200)
22 3iwv_A 5-hydroxyisourate hydro 63.2 13 0.00046 27.3 5.2 37 44-80 37-73 (138)
23 1dmh_A 1,2-CTD, catechol 1,2-d 58.7 20 0.00069 29.7 6.1 49 24-82 133-193 (311)
24 1f86_A Transthyretin Thr119Met 53.6 28 0.00094 24.7 5.3 36 44-80 12-47 (115)
25 1oo2_A Transthyretin; retinol- 52.6 27 0.00092 25.0 5.2 36 44-80 13-48 (119)
26 2h4e_A Transthyretin; amyloid, 45.8 42 0.0014 24.2 5.3 36 44-80 21-56 (127)
27 2g2n_A Transthyretin-like prot 44.6 39 0.0014 23.9 5.0 35 44-80 15-49 (114)
28 2ljk_A Protein C17ORF37; MIEN1 43.2 8 0.00027 27.7 1.1 14 73-86 61-74 (117)
29 3qva_A Transthyretin-like prot 42.5 42 0.0014 23.9 4.8 31 44-80 21-51 (116)
30 2pz4_A Protein GBS052; SPAB, G 37.5 64 0.0022 24.9 5.7 41 44-84 28-86 (239)
31 3kpt_A Collagen adhesion prote 30.8 81 0.0028 25.9 5.5 36 45-84 19-55 (355)
32 1f00_I Intimin; immunoglobulin 30.6 95 0.0032 25.2 5.8 50 22-85 18-67 (282)
33 1cwv_A Invasin; integrin-bindi 29.0 65 0.0022 27.9 4.8 51 23-85 26-76 (492)
34 3kpt_A Collagen adhesion prote 26.4 59 0.002 26.8 3.9 39 45-85 263-305 (355)
35 3jts_B Beta-2-microglobulin; a 25.5 1.6E+02 0.0054 20.1 5.5 26 74-99 77-107 (119)
36 1nkg_A Rhamnogalacturonase B; 24.8 78 0.0027 27.9 4.5 41 24-82 257-297 (508)
37 2bp3_A Filamin A; structural p 23.3 1.1E+02 0.0038 19.9 4.2 30 53-84 49-78 (97)
38 1x68_A FHL5 protein; four-and- 23.0 39 0.0013 21.0 1.7 16 25-40 51-66 (76)
39 2h0e_A Transthyretin-like prot 21.4 70 0.0024 22.8 2.9 32 44-80 20-51 (121)
40 2w9x_A AXE2A, CJCE2B, putative 20.4 55 0.0019 26.6 2.5 59 20-86 25-84 (366)
41 2p9r_A Alpha-2-M, alpha-2-macr 20.1 1.9E+02 0.0064 18.7 5.2 66 23-98 17-84 (102)
No 1
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Probab=94.44 E-value=0.022 Score=41.31 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=33.0
Q ss_pred CCEEEEEEEEcccCCCCCcCCCCccCC--CCEEEEEecCCCC-ceeEEEEEeEcCCCceEEEEec
Q 037924 23 DPFHIRGRVYCDTCRCGFETSATTYIQ--GARVRIECKDRNS-LNLKYSVDGDTDSTGTYNIHVD 84 (158)
Q Consensus 23 ~~~~V~G~VyCd~C~~~~~t~~s~pi~--GA~V~v~C~~~~~-~~v~~~~~~~TD~~G~F~i~l~ 84 (158)
..+.|.|+..|.. .|-+ +++|+|-=.+... ..-....+..||++|+|+|.-.
T Consensus 3 qsV~V~G~L~C~~----------~Pa~~~~V~V~L~d~~~~~~d~Ddll~~~~Td~~G~F~l~G~ 57 (117)
T 3uaf_A 3 SCLMATGVLKCPT----------DPEAVKKVHIDLWDAAAAAAESDDLMGRTWSDRNGNFQVTGC 57 (117)
T ss_dssp EEEEEEEEEECTT----------CGGGGSSCEEEEEEHHHHHTTSCCEEEEEECCTTSEEEEEEE
T ss_pred EEEEEEEEEEeCC----------ccCCCCCEEEEEEecccccCCchHhheeeEECCCCEEEEEEE
Confidence 3589999999942 4644 5666554211100 0112457889999999999854
No 2
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X
Probab=93.81 E-value=0.23 Score=43.15 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=43.5
Q ss_pred CCEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEEEE
Q 037924 23 DPFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYNIH 82 (158)
Q Consensus 23 ~~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~ 82 (158)
....|.|+||-|.=+.|-......+|+|++|.|. +. +|.+. .+.+||++|.|...
T Consensus 304 G~~~igg~Vw~D~n~nG~~D~~e~gl~gv~v~L~--d~-~G~~v--~tttTd~~G~Y~F~ 358 (429)
T 3irp_X 304 GFGGFGGYVWFDKNNDGVQNDSNAAAAGITVNLL--DP-TGIRL--ATTTTDITGHYNFD 358 (429)
T ss_dssp CEEEEEEEEEECTTSSSSSCCSSCBCTTCEEEEE--CT-TSCEE--EEEECCTTSEEEEE
T ss_pred ceEEEccEEEEeCCCCCCcCcCCCCcCCeEEEEE--cC-CCCEE--EEEEeCCCCeEEeC
Confidence 3478999999998666665566789999999996 44 45543 67899999999986
No 3
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=93.32 E-value=0.23 Score=33.95 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=31.2
Q ss_pred CCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEEEEe
Q 037924 44 ATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYNIHV 83 (158)
Q Consensus 44 ~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l 83 (158)
..+|++||+|.++=.+- . +......-.||++|.|++..
T Consensus 11 ~GkPV~gA~Vefe~yNy-a-e~~~~~~~~TD~~G~~s~~~ 48 (82)
T 3e8v_A 11 EGQPVADATVEFKVYNY-A-EFYTVATKHTDRSGHASLTA 48 (82)
T ss_dssp TSCBCTTCEEEEEEEET-T-EEEEEEEEECCTTSEEEEEC
T ss_pred CCCCCCCCEEEEEEEEc-h-heeEEEEEEECCCceEEEEE
Confidence 45799999999999986 2 33344678899999999998
No 4
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B
Probab=90.43 E-value=0.26 Score=41.45 Aligned_cols=52 Identities=23% Similarity=0.260 Sum_probs=38.0
Q ss_pred CCEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEEE-EecC
Q 037924 23 DPFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYNI-HVDG 85 (158)
Q Consensus 23 ~~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i-~l~~ 85 (158)
....|.|+|.++-=. .+....+.=.|++|.|.=.+. .++||++|||+| .+|.
T Consensus 156 ~~~~vsGYi~~~~~~--~~~~~~~~~~G~~V~i~gt~~---------sa~tD~~G~f~I~~vp~ 208 (321)
T 3kcp_A 156 EGYKVSGYILPDFSF--DATVAPLVKAGFKVEIVGTEL---------YAVTDANGYFEITGVPA 208 (321)
T ss_dssp SSEEEEEEEEESSCC--CTTTHHHHHSCCEEEETTSSC---------EEECCTTSEEEEEEECC
T ss_pred CCceEEEEEcccccc--ccccchhccCCcEEEEEeccc---------eeEECCCceEEEeccCC
Confidence 357899999997421 222445677999999975542 689999999999 4764
No 5
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1
Probab=84.73 E-value=0.84 Score=39.10 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=31.8
Q ss_pred EEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEEEEecC
Q 037924 25 FHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYNIHVDG 85 (158)
Q Consensus 25 ~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~ 85 (158)
..|.|+|. |. ...||+||.|.|+=.+. + ...+||.+|.|.+.++.
T Consensus 296 ~~I~G~V~-D~--------~g~pi~gA~V~v~g~~~--~-----~~~~Td~~G~y~~~l~~ 340 (426)
T 1uwy_A 296 LGVKGQVF-DQ--------NGNPLPNVIVEVQDRKH--I-----CPYRTNKYGEYYLLLLP 340 (426)
T ss_dssp CSEEEEEE-CT--------TSCBCCSCEEEETTCCC--S-----SCCBCCTTCEEEECCCS
T ss_pred ceeEEEEE-CC--------CCCccCceEEEEEeccc--c-----ceeEeCCCCEEEeccCC
Confidence 46999996 21 22599999999964332 1 13589999999987653
No 6
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}
Probab=84.36 E-value=1.1 Score=38.52 Aligned_cols=43 Identities=23% Similarity=0.158 Sum_probs=30.3
Q ss_pred EEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEEEEecC
Q 037924 26 HIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYNIHVDG 85 (158)
Q Consensus 26 ~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~ 85 (158)
.|.|+|. |. . ..||+||+|.|+ +. +. ...+||++|.|.+.++.
T Consensus 338 gv~G~V~-D~--~------G~pi~gA~V~v~--g~-~~-----~~~~Td~~G~y~~~l~p 380 (435)
T 3mn8_A 338 GIKGLVT-DA--S------GFPIADANVYVA--GL-EE-----KPMRTSKRGEYWRLLTP 380 (435)
T ss_dssp SEEEEEE-CS--S------SCBCTTCEEEET--TC-TT-----SCEECCTTCEEEECCCS
T ss_pred eeEEEEE-CC--C------CCccCceEEEEe--cc-cc-----cceEeCCCCeEEEecCC
Confidence 5999997 32 2 249999999993 31 01 13579999999887653
No 7
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=81.23 E-value=3.4 Score=33.50 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=34.3
Q ss_pred CEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCcee----------EEEEEeEcCCCceEEEE
Q 037924 24 PFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNL----------KYSVDGDTDSTGTYNIH 82 (158)
Q Consensus 24 ~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v----------~~~~~~~TD~~G~F~i~ 82 (158)
++.|+|+|.=-+| .||+||.|-|==.|. +|.. ...+...||++|.|.+.
T Consensus 102 ~l~l~G~V~D~~G---------~Pv~~A~VeiWqada-~G~Y~~~~~~~~~~~~rGr~~Td~~G~y~F~ 160 (254)
T 2boy_A 102 TLIFRGEVVDQEG---------APLADVLLDMWQADA-AGEYSFINPTLPDYLFRGKIRTDENGRFTLR 160 (254)
T ss_dssp EEEEEEEEECTTS---------CBCCSCEEEEECCCT-TSCCBTTBTTSCTTTTEEEEECCTTSEEEEE
T ss_pred EEEEEEEEECCCC---------CCCCCCEEEEEcCCC-CCccCCcCCCCCCCCCeeEEEeCCCceEEEE
Confidence 4889999984333 599999999953332 2222 12456789999999986
No 8
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Probab=80.69 E-value=1.3 Score=37.22 Aligned_cols=44 Identities=20% Similarity=0.074 Sum_probs=31.4
Q ss_pred EEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEEEEecC
Q 037924 25 FHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYNIHVDG 85 (158)
Q Consensus 25 ~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~ 85 (158)
..|.|+|.=. ....||+||+|.|+ +. ....+||.+|.|.+.++.
T Consensus 301 ~~i~G~V~D~--------~~g~pi~~A~V~v~--~~-------~~~~~Td~~G~y~~~l~~ 344 (380)
T 1h8l_A 301 RGIWGFVLDA--------TDGRGILNATISVA--DI-------NHPVTTYKDGDYWRLLVQ 344 (380)
T ss_dssp CEEEEEEEET--------TTCSBCTTCEEEET--TE-------EEEEECCTTSEEEECCCS
T ss_pred ccceEEEEeC--------CCCCccCceEEEEe--cC-------cceeEECCCEEEEEecCC
Confidence 5799999721 12359999999985 11 134689999999886653
No 9
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens}
Probab=79.77 E-value=1.4 Score=37.72 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=31.4
Q ss_pred EEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEEEEecC
Q 037924 25 FHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYNIHVDG 85 (158)
Q Consensus 25 ~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~ 85 (158)
..|.|+|. |. . ..||+||+|.|+=. ....+||.+|.|.+.++.
T Consensus 321 ~~i~G~V~-D~--~------g~pi~gA~V~v~~~---------~~~~~Td~~G~y~~~l~~ 363 (439)
T 2nsm_A 321 QGIKGMVL-DQ--N------YNNLANAVISVSGI---------NHDVTSGDHGDYFRLLLP 363 (439)
T ss_dssp CSEEEEEE-CT--T------SCBCTTCEEEETTE---------EEEEECCTTSEEEECCCS
T ss_pred cceEEEEE-cC--C------CCCccceEEEEEcc---------cceeEECCCCeEEEccCC
Confidence 57999997 21 2 25999999999511 135789999999887653
No 10
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=78.20 E-value=3.2 Score=32.59 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=34.7
Q ss_pred CCEEEEEEEEcccCCCCCcCCCCccCCCCEEEE-EecCCCC------c-----eeE--EEEEeEc-CCCceEEEE
Q 037924 23 DPFHIRGRVYCDTCRCGFETSATTYIQGARVRI-ECKDRNS------L-----NLK--YSVDGDT-DSTGTYNIH 82 (158)
Q Consensus 23 ~~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v-~C~~~~~------~-----~v~--~~~~~~T-D~~G~F~i~ 82 (158)
.++.|+|+|.=.+| .||+||.|-| +|..... . ... ..+...| |++|.|.+.
T Consensus 51 ~~l~v~G~V~D~~G---------~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~T~d~~G~y~F~ 116 (209)
T 2bum_A 51 QRIRLEGQVFDGLG---------LPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFN 116 (209)
T ss_dssp CEEEEEECEECTTS---------CBCSSCEEEEECCCTTSCCSSTTCCSCSCCCTTCCCEEEEECCTTTCCEEEE
T ss_pred CEEEEEEEEECCCC---------CCCCCCEEEEEecCCCCcccCccCCcccccCCCccceeEEeeeCCCcEEEEE
Confidence 45999999994433 4999999999 4443210 0 011 2456677 999999986
No 11
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=76.50 E-value=5.1 Score=33.41 Aligned_cols=49 Identities=24% Similarity=0.211 Sum_probs=33.4
Q ss_pred CEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCcee----------EEEEEeEcCCCceEEEE
Q 037924 24 PFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNL----------KYSVDGDTDSTGTYNIH 82 (158)
Q Consensus 24 ~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v----------~~~~~~~TD~~G~F~i~ 82 (158)
++.|.|+|+=.+| .||+||.|-|==.|. +|.. ...+...||++|.|.+.
T Consensus 136 ~l~v~G~V~D~~G---------~Pv~gA~VeiWqada-~G~Y~~~~~~~~~~~~rGr~~TD~~G~y~F~ 194 (312)
T 2xsu_A 136 TLIIEGTVTDTEG---------NIIEGAKVEVWHANS-LGNYSFFDKSQSDFNLRRTILTDVNGKYVAL 194 (312)
T ss_dssp EEEEEEEEEETTS---------CBCTTCEEEEECCCT-TSCCBTTBTTSCTTTTEEEEECCTTSEEEEE
T ss_pred eEEEEEEEECCCC---------CCCCCCEEEEEecCC-CCcccCCCCCCCCCCCeeEEEeCCCceEEEE
Confidence 5778888874333 599999999953332 1221 12356789999999976
No 12
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=76.45 E-value=7.4 Score=31.19 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=36.1
Q ss_pred CCEEEEEEEEcccCCCCCcCCCCccCCCCEEEE-EecCCCC-------------ceeEEEEEeEcCCCceEEEE
Q 037924 23 DPFHIRGRVYCDTCRCGFETSATTYIQGARVRI-ECKDRNS-------------LNLKYSVDGDTDSTGTYNIH 82 (158)
Q Consensus 23 ~~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v-~C~~~~~-------------~~v~~~~~~~TD~~G~F~i~ 82 (158)
..+.|+|+|+=.+| .||+||.|-| +|...+. ......+...||++|.|.+.
T Consensus 76 ~~i~l~G~V~D~~G---------~Pv~~A~VEiWqada~G~Y~~~~d~~~~~~~~~f~~rGr~~TD~~G~y~F~ 140 (238)
T 3t63_M 76 ERIIVAGRVVDQYG---------KPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFR 140 (238)
T ss_dssp CEEEEEEEEEETTS---------CBCTTCEEEEEECCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEE
T ss_pred cEEEEEEEEECCCC---------CCCCCCEEEEEecCCCCCCCCccccccccCCCCcCceeEEEECCCceEEEE
Confidence 45999999995443 4999999999 5543310 00123466789999999986
No 13
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=74.77 E-value=6.2 Score=32.58 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=35.5
Q ss_pred CEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCce---------eEEEEEeEcCCCceEEEE
Q 037924 24 PFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLN---------LKYSVDGDTDSTGTYNIH 82 (158)
Q Consensus 24 ~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~---------v~~~~~~~TD~~G~F~i~ 82 (158)
++.|+|+|+=.+| .||+||.|-|==.|. +|. ..+.+...||++|.|.+.
T Consensus 133 ~l~v~G~V~D~~G---------~Pv~~A~VEiWqada-~G~Y~~~~~~~~~~~rGr~~TD~~G~y~F~ 190 (293)
T 1tmx_A 133 PCWVEGTVTDTDG---------NPVPDARIEVWEADD-DGFYDVQYDDDRTAARAHLLSGPDGGYAFW 190 (293)
T ss_dssp EEEEEEEEEETTS---------CBCTTCEEEEECCCT-TSCCGGGSSSCCCCSEEEEECCTTSEEEEE
T ss_pred EEEEEEEEECCCC---------CCCCCceeEEEecCC-CCcccCCccCCCCCceeEEEeCCCceEEEE
Confidence 5889999984433 499999999944333 232 234577889999999986
No 14
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=73.79 E-value=5.6 Score=32.80 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=35.1
Q ss_pred CEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCcee----------EEEEEeEcCCCceEEEE
Q 037924 24 PFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNL----------KYSVDGDTDSTGTYNIH 82 (158)
Q Consensus 24 ~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v----------~~~~~~~TD~~G~F~i~ 82 (158)
++.|.|+|+=.+| .||+||.|-|==.|. +|.. ...+...||++|.|.+.
T Consensus 129 ~l~l~G~V~D~~G---------~Pv~~A~VeiWqada-~G~Y~~~~~~~~~~~lRGr~~TD~~G~y~F~ 187 (290)
T 3n9t_A 129 PALVYGRVLDVQG---------RPVVGAVLDVWQTAD-NGMYSGQDPDQPFGNLRGRYRSDNDGCFAIQ 187 (290)
T ss_dssp EEEEEEEEEETTS---------CBCSSCEEEEECCCT-TSCCTTTSTTSCTTTTEEEEECCTTSEEEEE
T ss_pred eEEEEEEEECCCC---------CCCCCCEEEEEccCC-CCCcCCCCCCCCCCCceeEEEeCCCceEEEE
Confidence 5889999995443 499999999943332 2222 13567789999999986
No 15
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=73.21 E-value=8.2 Score=30.91 Aligned_cols=50 Identities=18% Similarity=0.074 Sum_probs=35.6
Q ss_pred CCEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCce---------------eEEEEEeEcCCCceEEEE
Q 037924 23 DPFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLN---------------LKYSVDGDTDSTGTYNIH 82 (158)
Q Consensus 23 ~~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~---------------v~~~~~~~TD~~G~F~i~ 82 (158)
..+.|+|+|+=.+| .||+||.|-|==.|. +|. ....+...||++|.|.+.
T Consensus 77 ~~i~v~G~V~D~~G---------~Pv~~A~VeiWqada-~G~Y~~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~ 141 (241)
T 2bum_B 77 ERVIVHGYVRDQFG---------RPVKNALVEVWQANA-SGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFR 141 (241)
T ss_dssp CEEEEEEEEEETTS---------CBCCSCEEEEECCCT-TSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEE
T ss_pred cEEEEEEEEECCCC---------CCCCCcEEEEEecCC-CceeCCCCCCcccccCCCccceeEEEeCCCceEEEE
Confidence 46999999995443 499999999943332 121 112467789999999986
No 16
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=73.03 E-value=6.8 Score=31.80 Aligned_cols=50 Identities=30% Similarity=0.387 Sum_probs=34.3
Q ss_pred CEEEEEEEEcccCCCCCcCCCCccCCCCEEEE-EecCCCC--------ceeEEEEEeEcCCCceEEEE
Q 037924 24 PFHIRGRVYCDTCRCGFETSATTYIQGARVRI-ECKDRNS--------LNLKYSVDGDTDSTGTYNIH 82 (158)
Q Consensus 24 ~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v-~C~~~~~--------~~v~~~~~~~TD~~G~F~i~ 82 (158)
++.|.|+|+=.+| .||+||.|-| +|...+. ......+...||++|.|.+.
T Consensus 99 pl~v~G~V~D~~G---------~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~TD~~G~y~F~ 157 (260)
T 3th1_A 99 PLIIRGTVRSDTG---------ELLAGAVIDVWHSTPDGLYSGIHDNIPVDYYRGKLVTDSQGNYRVR 157 (260)
T ss_dssp EEEEEEEEEETTS---------CBCSSCEEEEEECCTTSCCTTTSTTCCTTBTEEEEECCTTSEEEEE
T ss_pred EEEEEEEEECCCC---------CCcCCcEEEEEecCCCCcccCcCCCCCCCCCceEEEeCCCCEEEEE
Confidence 4889999983332 4999999999 4443210 01113467789999999886
No 17
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=71.83 E-value=8.4 Score=32.06 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=34.4
Q ss_pred CEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCcee----------EEEEEeEcCCCceEEEE
Q 037924 24 PFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNL----------KYSVDGDTDSTGTYNIH 82 (158)
Q Consensus 24 ~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v----------~~~~~~~TD~~G~F~i~ 82 (158)
++.|.|+|+=-+ ..||+||.|-|==.|. +|.. ...+...||++|.|.+.
T Consensus 132 ~l~v~G~V~D~~---------G~Pv~gA~VeiWqada-~G~Y~~~~~~~~~f~~rGr~~TD~~G~y~F~ 190 (311)
T 2azq_A 132 VMFLQGQVFDAN---------GKPLAGATVDLWHANT-QGTYSYFDSTQSEFNLRRRIITDAEGRYRAR 190 (311)
T ss_dssp EEEEEEEEECSS---------SCBCTTCEEEEECCCT-TSCCBTTBTTSCTTTTEEEEECCTTCEEEEE
T ss_pred EEEEEEEEEcCC---------CCCCCCceeEEEecCC-CCccCCCCCCCCCCCCeeEEEeCCCceEEEE
Confidence 478999998332 2699999999953333 2322 12456789999999986
No 18
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=71.36 E-value=7.6 Score=28.93 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=28.5
Q ss_pred CCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEE
Q 037924 44 ATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYN 80 (158)
Q Consensus 44 ~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~ 80 (158)
...|-+|..|+|.=.+. ++....-.+++||++|.-.
T Consensus 41 ~G~PA~gv~V~L~~~~~-~~~~~~l~~~~Td~DGR~~ 76 (147)
T 4ank_A 41 RGSPAINVAVHVFRKAA-DDTWEPFASGKTSESGELH 76 (147)
T ss_dssp TTEECCSCEEEEEEECT-TSCEEEEEEEECCTTSEEC
T ss_pred CCcCCCCCEEEEEEECC-CCCeEEEEEEEeCCCCCCC
Confidence 45799999999987765 3555666899999999864
No 19
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Probab=68.82 E-value=8.3 Score=31.24 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=34.5
Q ss_pred CEEEEEEEEcccCCCCCcCCCCccCCCCEEEE-EecCCCCce-----------eEEEEEeEcCCCceEEEE
Q 037924 24 PFHIRGRVYCDTCRCGFETSATTYIQGARVRI-ECKDRNSLN-----------LKYSVDGDTDSTGTYNIH 82 (158)
Q Consensus 24 ~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v-~C~~~~~~~-----------v~~~~~~~TD~~G~F~i~ 82 (158)
++.|+|+|+=-+| .||+||.|-| +|... |. ....+...||++|.|.+.
T Consensus 103 ~l~l~G~V~D~~G---------~Pv~~A~VeiWqada~--G~Ys~~~~~~~~~~~~RGr~~TD~~G~y~F~ 162 (257)
T 3o5u_A 103 RMRFTGSVRDTSG---------TPITGAVIDVWHSTND--GNYSFFSPALPDQYLLRGRVVPAEDGSIEFH 162 (257)
T ss_dssp EEEEEEEEECTTC---------CBCTTCEEEEECCCTT--SCCTTSCTTSCSSCTTEEEECCCTTSEEEEE
T ss_pred EEEEEEEEECCCC---------CCCCCcEEEEEecCCC--CCCCCcCCCCCcccCceeEEEeCCCceEEEE
Confidence 5889999994433 5999999999 44432 21 123467789999999986
No 20
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=68.01 E-value=9.8 Score=31.22 Aligned_cols=49 Identities=22% Similarity=0.227 Sum_probs=34.4
Q ss_pred CEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCcee----------EEEEEeEcCCCceEEEE
Q 037924 24 PFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNL----------KYSVDGDTDSTGTYNIH 82 (158)
Q Consensus 24 ~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v----------~~~~~~~TD~~G~F~i~ 82 (158)
++.|.|+|+=-+| .||+||.|-|==.|. +|.. ...+...||++|.|.+.
T Consensus 131 pl~l~G~V~D~~G---------~Pv~~A~VeiWqada-~G~Ys~~~~~~~~~~lRGr~~TD~dG~y~F~ 189 (280)
T 3hhy_A 131 PLVFSGQVTDLDG---------NGLAGAKVELWHADN-DGYYSQFAPHLPEWNLRGTIIADEEGRYEIT 189 (280)
T ss_dssp EEEEEEEEECTTS---------CBCSSCEEEEECCCT-TSCCTTSSTTSCTTTTEEEEECCTTSEEEEE
T ss_pred EEEEEEEEECCCC---------CCCCCcEEEEEecCC-CCCCCCCCCCCCCCcceEEEEeCCCceEEEE
Confidence 5888999984433 599999999943332 1211 12467789999999986
No 21
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=66.34 E-value=11 Score=29.28 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=35.9
Q ss_pred CCEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCce----------eEEEEEeEcCCC-ceEEEE
Q 037924 23 DPFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLN----------LKYSVDGDTDST-GTYNIH 82 (158)
Q Consensus 23 ~~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~----------v~~~~~~~TD~~-G~F~i~ 82 (158)
.++.|+|+|+=-+| .||+||.|-|==.|. +|. ....+...||++ |.|.+.
T Consensus 47 ~~l~v~G~V~D~~G---------~Pv~~A~VeiWqada-~G~Y~~~~~~~~~f~~rGr~~TD~~~G~~~F~ 107 (200)
T 3t63_A 47 EHILLLGQVYDGNG---------HLVRDSFLEVWQADA-NGEYQDAYNLENAFNSFGRTATTFDAGEWTLH 107 (200)
T ss_dssp CEEEEEECEECTTS---------CBCSSCEEEEEECCT-TSCCCCBCCTTSSBCSEEEEECCSSCCSEEEE
T ss_pred CEEEEEEEEECCCC---------CCCCCCEEEEEccCC-CCCcCCCCCCCCCccccceEecCCCCCEEEEE
Confidence 46999999994443 499999999954443 222 123466789998 999986
No 22
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=63.15 E-value=13 Score=27.35 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=27.9
Q ss_pred CCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEE
Q 037924 44 ATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYN 80 (158)
Q Consensus 44 ~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~ 80 (158)
...|-+|..|.|.=.+...+......+++||++|.-.
T Consensus 37 ~G~PAagv~V~L~~~~~~~~~w~~l~~~~Tn~DGR~~ 73 (138)
T 3iwv_A 37 QGVPGANMTIVLHRLDPVSSAWNILTTGITNDDGRCP 73 (138)
T ss_dssp TTEECTTCEEEEEEECSSSCCEEEEEEEECCTTSCCT
T ss_pred CccCCCCCEEEEEEECCCCCCcEEEEEEecCCCCCcC
Confidence 4579999999999776422445566899999999753
No 23
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=58.73 E-value=20 Score=29.75 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=32.5
Q ss_pred CEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCce------------eEEEEEeEcCCCceEEEE
Q 037924 24 PFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLN------------LKYSVDGDTDSTGTYNIH 82 (158)
Q Consensus 24 ~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~------------v~~~~~~~TD~~G~F~i~ 82 (158)
++.|.|+|+=-+ ..||+||.|-|==.|. +|. ....+...||++|.|.+.
T Consensus 133 ~l~l~G~V~D~~---------G~Pv~~A~VeiWqada-~G~Ys~~~~~~~~~~~~~RGr~~TD~~G~y~F~ 193 (311)
T 1dmh_A 133 TLILHGTIFDAD---------GKPLPNAKVEIWHANT-KGFYSHFDPTGEQQAFNMRRSIITDENGQYRVR 193 (311)
T ss_dssp EEEEEEEEECTT---------SCBCTTCEEEEEECCT-TSCCTTSCTTSCCSTTTTEEEEECCTTSEEEEE
T ss_pred eEEEEEEEEcCC---------CCCCCCcEEEEEccCC-CcccCCcCCcccCCCCCCeeEEEeCCCceEEEE
Confidence 467777777322 3699999999943332 121 112456789999999986
No 24
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ...
Probab=53.62 E-value=28 Score=24.74 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=27.1
Q ss_pred CCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEE
Q 037924 44 ATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYN 80 (158)
Q Consensus 44 ~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~ 80 (158)
...|-+|..|+|.=.+. .+....-++++||++|.-.
T Consensus 12 ~G~PAagv~V~L~~~~~-~~~~~~l~~~~Tn~DGR~~ 47 (115)
T 1f86_A 12 RGSPAINVAVHVFRKAA-DDTWEPFASGKTSESGELH 47 (115)
T ss_dssp TTEECTTCEEEEEEECT-TSCEEEEEEEECCTTSEEC
T ss_pred CCCcCCCCEEEEEEcCC-CCCcEEEEEeecCCCcccc
Confidence 45799999999986543 1335556899999999875
No 25
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A*
Probab=52.57 E-value=27 Score=24.97 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEE
Q 037924 44 ATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYN 80 (158)
Q Consensus 44 ~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~ 80 (158)
...|-+|..|+|.=.+. .+....-++++||++|.-.
T Consensus 13 ~G~PAagv~V~L~~~~~-~~~~~~l~~~~Tn~DGR~~ 48 (119)
T 1oo2_A 13 KGTPAGSVALKVSQKTA-DGGWTQIATGVTDATGEIH 48 (119)
T ss_dssp TTEECTTCEEEEEEECT-TSCEEEEEEEECCTTSCCT
T ss_pred CcCCCCCCEEEEEEeCC-CCCcEEEEEEecCCCCccc
Confidence 45799999999986543 1335556899999998653
No 26
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A
Probab=45.79 E-value=42 Score=24.22 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=26.9
Q ss_pred CCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEE
Q 037924 44 ATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYN 80 (158)
Q Consensus 44 ~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~ 80 (158)
...|-+|..|+|.=.+. .+....-.+++||++|...
T Consensus 21 ~G~PAagv~V~L~~~~~-~~~w~~l~~~~Tn~DGR~~ 56 (127)
T 2h4e_A 21 RGSPAINVAVHVFRKAA-DDTWEPFASGKTSESGELH 56 (127)
T ss_dssp TTEECTTCEEEEEEECT-TSCEEEEEEEECCTTSEEC
T ss_pred CcCCCCCCEEEEEEeCC-CCCeEEEEEeecCCCcccc
Confidence 45799999999986542 2334556899999999875
No 27
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=44.59 E-value=39 Score=23.91 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=26.5
Q ss_pred CCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEE
Q 037924 44 ATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYN 80 (158)
Q Consensus 44 ~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~ 80 (158)
...|-+|..|.|.=.+. +....-.+++||++|.-.
T Consensus 15 ~G~PAagv~V~L~~~~~--~~~~~l~~~~Tn~DGR~~ 49 (114)
T 2g2n_A 15 TGKPAADVTVTLEKKAD--NGWLQLNTAKTDKDGRIK 49 (114)
T ss_dssp TTEECCSCEEEEEEECS--SSEEEEEEEECCTTSEES
T ss_pred CcCCCCCCEEEEEEeCC--CCcEEEEEEecCCCCccc
Confidence 45799999999986554 224556899999999864
No 28
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=43.19 E-value=8 Score=27.74 Aligned_cols=14 Identities=29% Similarity=0.764 Sum_probs=10.9
Q ss_pred cCCCceEEEEecCC
Q 037924 73 TDSTGTYNIHVDGD 86 (158)
Q Consensus 73 TD~~G~F~i~l~~~ 86 (158)
....|.|.|.+++.
T Consensus 61 pg~~G~FeV~v~g~ 74 (117)
T 2ljk_A 61 LGGTGAFEIEINGQ 74 (117)
T ss_dssp ECSSSCEEEETTSS
T ss_pred cCCCceEEEEECCE
Confidence 35569999999874
No 29
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=42.53 E-value=42 Score=23.92 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=24.2
Q ss_pred CCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEE
Q 037924 44 ATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYN 80 (158)
Q Consensus 44 ~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~ 80 (158)
...|-+|..|+|.-.+ ....+++||++|.-.
T Consensus 21 ~G~PAagv~V~L~~~~------~~l~~~~Tn~DGR~~ 51 (116)
T 3qva_A 21 TGTPAEGVTVSLSREG------ETLANLVTNAQGRIA 51 (116)
T ss_dssp TTEECTTCEEEEEETT------EEEEEEECCTTSEEC
T ss_pred CCcCCCCCEEEEEEcc------EeEEEeccCCCCCcc
Confidence 3479999999998654 235789999999873
No 30
>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions, IGG-like domain, cell adhesion; 1.80A {Streptococcus agalactiae} PDB: 3phs_A
Probab=37.48 E-value=64 Score=24.89 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=28.2
Q ss_pred CCccCCCCEEEEEecCCC-Cce----------------eEEEEEeEcCCCceEEEE-ec
Q 037924 44 ATTYIQGARVRIECKDRN-SLN----------------LKYSVDGDTDSTGTYNIH-VD 84 (158)
Q Consensus 44 ~s~pi~GA~V~v~C~~~~-~~~----------------v~~~~~~~TD~~G~F~i~-l~ 84 (158)
...||+||+..|.-.+.. ... -....+.+||++|.+.+. |+
T Consensus 28 ~g~~L~Ga~F~l~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~tTd~~G~~~~~~L~ 86 (239)
T 2pz4_A 28 EGTPIEGVLYQLYQLKSTEDGDLLAHWNSLTITELKKQAQQVFEATTNQQGKATFNQLP 86 (239)
T ss_dssp SCEECSSCEEEEEEESCCCCTTHHHHHHTSCHHHHHHHEEEEEEEECCTTSEEEEEEEE
T ss_pred CCCCcCCcEEEEEEecCcccccccchhhhhchhhhhccCCceeEEEECCCCeEEECCCC
Confidence 458999999999876542 000 012356789999999885 54
No 31
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=30.77 E-value=81 Score=25.95 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=25.9
Q ss_pred CccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEEEE-ec
Q 037924 45 TTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYNIH-VD 84 (158)
Q Consensus 45 s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~-l~ 84 (158)
..+|+||+-.|.=.+. .. .....+||++|.+.+. |+
T Consensus 19 ~~~L~GA~F~l~~~~g---~~-~~~~~tTd~~G~~~~~~L~ 55 (355)
T 3kpt_A 19 EKAMAGAVFSLFKKDG---TE-VKKELATDANGHIRVQGLE 55 (355)
T ss_dssp GCBCCSCEEEEEETTS---CE-EEEEEECCTTSEEEEEEEE
T ss_pred CCCcCCcEEEEEECCC---CE-EEEEEEECCCCeEEECCcC
Confidence 3699999999985543 22 2256789999999883 44
No 32
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=30.59 E-value=95 Score=25.17 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=37.0
Q ss_pred CCCEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEEEEecC
Q 037924 22 GDPFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYNIHVDG 85 (158)
Q Consensus 22 ~~~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~ 85 (158)
...+.++=.|. | .|. |++|..|...=.+. .. .....+||++|...+.|-.
T Consensus 18 ~d~~t~tatV~-D---~gn------pv~g~~V~fs~~~G---~l-~~~~~~Td~~G~atvtlts 67 (282)
T 1f00_I 18 QDAITYTVKVM-K---GDK------PVSNQEVTFTTTLG---KL-SNSTEKTDTNGYAKVTLTS 67 (282)
T ss_dssp CCCEEEEEEEE-E---TTE------ECTTCEEEEEESSS---EE-SCSEEECCTTSEEEEEEEC
T ss_pred cceEEEEEEEE-E---CCc------ccCCcEEEEEcCCC---cc-ccceeEECCCcEEEEEEEc
Confidence 35578888888 4 343 99999999976654 22 2245789999999999964
No 33
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=28.98 E-value=65 Score=27.93 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=35.6
Q ss_pred CCEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEEEEecC
Q 037924 23 DPFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYNIHVDG 85 (158)
Q Consensus 23 ~~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~ 85 (158)
....++-+|. .....|++|..|.+.-.+. ...-.....||++|.+.+.+..
T Consensus 26 ~~~~ltatV~---------D~~Gnpv~g~~Vtf~~~~g---~~~~~~t~~Td~~G~a~~tlts 76 (492)
T 1cwv_A 26 TAITVEFTVA---------DFEGKPLAGQEVVITTNNG---ALPNKITEKTDANGVARIALTN 76 (492)
T ss_dssp SCEEEEEEEE---------CTTSCBCCSCEEEEECCTT---CBSCEEEEECCTTSEEEEEEBC
T ss_pred ceEEEEEEEE---------cCCCCCCCCCEEEEEECCC---ccccccceeeCCCceEEEEEEc
Confidence 4567777775 1234599999999985543 2222356789999999999854
No 34
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=26.42 E-value=59 Score=26.82 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=27.1
Q ss_pred CccCCCCEEEEEecCCCCceeEE---EEEeEcCCCceEEEE-ecC
Q 037924 45 TTYIQGARVRIECKDRNSLNLKY---SVDGDTDSTGTYNIH-VDG 85 (158)
Q Consensus 45 s~pi~GA~V~v~C~~~~~~~v~~---~~~~~TD~~G~F~i~-l~~ 85 (158)
..+|+||+-.|...+.. .+.. ..+.+||++|.|.+. |+.
T Consensus 263 ~~~L~GA~F~l~~~~g~--~~~~~~~~~~~~td~~G~~~~~~L~~ 305 (355)
T 3kpt_A 263 KNKMKGAEFVLKDNNGK--IVVVAGKEVTGVSDENGVIKWSNIPY 305 (355)
T ss_dssp CCBCSCCEEEEEETTSC--BCBSSSSBCEEECCTTSEEEEEEEES
T ss_pred CcccCCCEEEEEeCCCC--EEEeccceEEEEECCCCeEEECcCCC
Confidence 35999999999966542 1210 015689999999986 553
No 35
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune response, MHC I membrane, transmembrane, disease mutation; 2.80A {Homo sapiens}
Probab=25.50 E-value=1.6e+02 Score=20.13 Aligned_cols=26 Identities=8% Similarity=0.266 Sum_probs=15.5
Q ss_pred CCCceEEEE----ec-CCCCCcceEEEEccC
Q 037924 74 DSTGTYNIH----VD-GDHQDQICYVKLISS 99 (158)
Q Consensus 74 D~~G~F~i~----l~-~~~~~~~C~v~LvsS 99 (158)
+.+|.|++. ++ ++...-.|.|.=.+.
T Consensus 77 ~~dgty~~~s~L~v~~~~~~~ytC~V~H~~l 107 (119)
T 3jts_B 77 SKDWSFYLLYYTEFTPTEKDEYACRVNHVTL 107 (119)
T ss_dssp CTTSCEEEEEEEEECCCSSCCEEEEEECTTC
T ss_pred CCCCeEEEEEEEEEECCCCCEEEEEEEeCCC
Confidence 678889864 33 333345687775443
No 36
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A
Probab=24.83 E-value=78 Score=27.89 Aligned_cols=41 Identities=15% Similarity=0.007 Sum_probs=26.8
Q ss_pred CEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEEEE
Q 037924 24 PFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYNIH 82 (158)
Q Consensus 24 ~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~ 82 (158)
.-.|.|+|. +. .+=..|.|.+.|++. ...+.||++|.|.|+
T Consensus 257 RGtVsG~V~------G~-----~~~~~avv~~~~k~~-------qywt~td~~G~FtI~ 297 (508)
T 1nkg_A 257 RGKVAGTAS------GA-----DSSMDWVVHWYNDAA-------QYWTYTSSSGSFTSP 297 (508)
T ss_dssp CBEEEEEEE------SS-----CTTSCEEEEEECSSC-------EEEEECCTTCEEECC
T ss_pred ccEEEEEEc------Cc-----cCCceEEEEEcCCCc-------eeEEEECCCCcEEeC
Confidence 357999987 21 011234566666653 246789999999996
No 37
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=23.34 E-value=1.1e+02 Score=19.89 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=17.9
Q ss_pred EEEEecCCCCceeEEEEEeEcCCCceEEEEec
Q 037924 53 VRIECKDRNSLNLKYSVDGDTDSTGTYNIHVD 84 (158)
Q Consensus 53 V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~ 84 (158)
+.++|.+..+|. |...-+-.+.|.|.|.+.
T Consensus 49 ~~~~v~d~~dGt--y~v~Y~p~~~G~y~i~V~ 78 (97)
T 2bp3_A 49 AEISCTDNQDGT--CSVSYLPVLPGDYSILVK 78 (97)
T ss_dssp CEEEEEECSSSE--EEEEEECSSCEEEEEEEE
T ss_pred CEEEEEECCCCE--EEEEEEeCCCCcEEEEEE
Confidence 345667765443 344445566788888764
No 38
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.04 E-value=39 Score=21.02 Aligned_cols=16 Identities=19% Similarity=0.810 Sum_probs=11.3
Q ss_pred EEEEEEEEcccCCCCC
Q 037924 25 FHIRGRVYCDTCRCGF 40 (158)
Q Consensus 25 ~~V~G~VyCd~C~~~~ 40 (158)
+...|.+||..|....
T Consensus 51 ~~~~g~~yC~~cy~~~ 66 (76)
T 1x68_A 51 LTQNKEIFCQKCGSGM 66 (76)
T ss_dssp EEETTEEEETTTTCCC
T ss_pred EeECCEEECHHHhhhh
Confidence 4567788888887654
No 39
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=21.40 E-value=70 Score=22.83 Aligned_cols=32 Identities=6% Similarity=0.074 Sum_probs=22.9
Q ss_pred CCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEE
Q 037924 44 ATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYN 80 (158)
Q Consensus 44 ~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~ 80 (158)
...|-+|..|.|.=.+. ..-.+++||++|...
T Consensus 20 ~G~PAagv~V~L~~~~~-----~~l~~~~Tn~DGR~~ 51 (121)
T 2h0e_A 20 CGKPAANVKIGLKRLGE-----SIMKEVYTNNDGRVD 51 (121)
T ss_dssp TTEECTTCEEEEEETTS-----CCCEEEECCTTSSCS
T ss_pred CcCCCCCCEEEEEECCc-----eEEEEEecCCCCCcc
Confidence 45799999999985442 123678899888653
No 40
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=20.38 E-value=55 Score=26.59 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=32.2
Q ss_pred cCCCCEEEEEEEEcccCCCCCc-CCCCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEEEEecCC
Q 037924 20 NAGDPFHIRGRVYCDTCRCGFE-TSATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYNIHVDGD 86 (158)
Q Consensus 20 ~~~~~~~V~G~VyCd~C~~~~~-t~~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~~ 86 (158)
+...++...|++. .-..+.. ......-+|+.++..++... +..... |..++|.+.+++.
T Consensus 25 ~~~~~~~~~GR~~--~~~~~~~~~~~~~~~~G~~~~~~f~gt~---~~~~~~---~~~~~~~v~vDg~ 84 (366)
T 2w9x_A 25 TKPLPLHIGGRVL--VESPANQPVSYTYSWPAVYFETAFKGQS---LTLKFD---DDQNIFRLIVDDK 84 (366)
T ss_dssp --CCCCEEESCCE--EECC--CCCEEEECSTTCEEEECC-CCC---CCEEEE---ESSCEEEEEC--C
T ss_pred CCCCceEEeeeec--ccCCCcccceeEEecCCEEEEEEEEeCE---EEEEEe---CCCcEEEEEECCe
Confidence 3556799999984 2111100 01235678999988888762 333222 3578888888764
No 41
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=20.11 E-value=1.9e+02 Score=18.74 Aligned_cols=66 Identities=9% Similarity=-0.083 Sum_probs=41.4
Q ss_pred CCEEEEEEEEcccCCCCCcCCCCccCCCCEEEEEecCCCCceeEEEEEeEcCCCceEEEEe--cCCCCCcceEEEEcc
Q 037924 23 DPFHIRGRVYCDTCRCGFETSATTYIQGARVRIECKDRNSLNLKYSVDGDTDSTGTYNIHV--DGDHQDQICYVKLIS 98 (158)
Q Consensus 23 ~~~~V~G~VyCd~C~~~~~t~~s~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l--~~~~~~~~C~v~Lvs 98 (158)
.++.+.+.+. | . ...|..+..+.|+=.|- +|.........++++|.|..++ |.....-...+++..
T Consensus 17 etV~~~~~~~-~----~----~~~p~~~~~~~v~l~dp-~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~ 84 (102)
T 2p9r_A 17 QTVKFRVVSM-D----E----NFHPLNELIPLVYIQDP-KGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQK 84 (102)
T ss_dssp CEEEEEEEEE-C----G----GGCBCCCEEEEEEEECT-TSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEEC
T ss_pred CEEEEEEEEE-C----C----CCcCCCCCceEEEEECC-CCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEE
Confidence 4466777766 1 1 12466665566666676 4555555567889999988765 455555667777654
Done!