BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037925
(821 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/321 (34%), Positives = 156/321 (48%), Gaps = 27/321 (8%)
Query: 11 ALVIDGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFE 70
+++G+ V+++ IHYPR E W I+ K G I YVFWN+HEP G+Y F
Sbjct: 14 TFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFA 73
Query: 71 GRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMK 130
G+ D+ F + QE G ++ +R GPY CAEW GG P WL I+ R + + E +K
Sbjct: 74 GQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQDPYYXERVK 133
Query: 131 RFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWAYGVGGELYVKWAADTAVNLN-T 189
FL ++ + +L S+GG II QVENEYG A+G+ + Y+ D T
Sbjct: 134 LFLNEVGKQLA--DLQISKGGNIIXVQVENEYG----AFGI-DKPYISEIRDXVKQAGFT 186
Query: 190 SVPWVMCQ-----QEDAPDPIINTCN---GFYCD----GFTPNSPSKPIMWTENYSGWFL 237
VP C + +A D ++ T N G D P P+ +E +SGWF
Sbjct: 187 GVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWFD 246
Query: 238 SFGYAVPFRPVEDLAFAVARFFETGGTFQNYYMYFGGTNFGRTAGGPL-----VATSYDY 292
+G R E+L + +F Y + GGT+FG G TSYDY
Sbjct: 247 HWGAKHETRSAEELVKGXKEXLDRNISFSLYXTH-GGTSFGHWGGANFPNFSPTCTSYDY 305
Query: 293 DAPIDEYGFIRQPKWGHLREL 313
DAPI+E G + PK+ +R L
Sbjct: 306 DAPINESGKV-TPKYLEVRNL 325
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 90/234 (38%), Gaps = 54/234 (23%)
Query: 470 KEVFLNIESLGHAALVFVN-KKLVAFGYGNHDFANFLINKKIELNEGINTLDILSMMVGL 528
KE L I A VF+N KKL + K L EG + LDIL G
Sbjct: 396 KEQTLLITEAHDWAQVFLNGKKLATLSR----LKGEGVVKLPPLKEG-DRLDILVEAXGR 450
Query: 529 QNYG-AWFDVAGAGLFSVILIDLKNGKRDLSSGEW-IYQVGVEGEYIGLDKISLANSSFW 586
N+G +D G ++L++ K +W +Y + V+ S A +
Sbjct: 451 XNFGKGIYDWKGI----TEKVELQSDKGVELVKDWQVYTIPVD--------YSFARDKQY 498
Query: 587 KQGSTLPVNKSLIWYKTTFLAPEGKGPLALNLASMGKGQAWVNGQSIGRYWSAYLAPSTG 646
KQ +Y++TF E G LN + KG WVNG +IGRYW
Sbjct: 499 KQQEN--AENQPAYYRSTFNLNE-LGDTFLNXXNWSKGXVWVNGHAIGRYWEI------- 548
Query: 647 CTKKCDYRGSYDASKCQKHCGQPAQTLYHIPRTWVHPGENLLVIHEELGGDPSK 700
P QTLY +P W+ GEN ++I + G PSK
Sbjct: 549 ---------------------GPQQTLY-VPGCWLKKGENEIIILDXAG--PSK 578
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 156/344 (45%), Gaps = 26/344 (7%)
Query: 5 VTYDHRALVIDGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIR 64
+ Y + + DG+ SGSIHY R W + + K K GL I+TYV WN+HEP
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 65 GQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNP 124
GQY F D+ F++ E GL + LR GPY CAEW GG P WL I R+++
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 125 FKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWAYGVGGELYVKW----- 179
+ + ++L ++ MK L GGP+I QVENEYG +Y Y+++
Sbjct: 131 YLAAVDKWLGVLLPKMKP--LLYQNGGPVITVQVENEYG----SYFACDFDYLRFLQKRF 184
Query: 180 ---AADTAVNLNTS---VPWVMCQQEDAPDPIINTCNGF-YCDGFTPN---SPSKPIMWT 229
D V T ++ C ++ G D F P P++ +
Sbjct: 185 RHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINS 244
Query: 230 ENYSGWFLSFGYAVPFRPVEDLAFAVARFFETGGTFQNYYMYFGGTNFG--RTAGGPLVA 287
E Y+GW +G E +A ++ G + N YM+ GGTNF A P A
Sbjct: 245 EFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASV-NLYMFIGGTNFAYWNGANSPYAA 303
Query: 288 --TSYDYDAPIDEYGFIRQPKWGHLRELHKAIKLCEEYLISSDP 329
TSYDYDAP+ E G + + + + K K+ E + S P
Sbjct: 304 QPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTP 347
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 17/131 (12%)
Query: 518 TLDILSMMVGLQNYGAWFD-----VAGAGLFSVILIDLKNGKRDLSSGEWIYQVGVEGEY 572
TLD+L +G NYGA+ + V+ L S IL D D + G
Sbjct: 449 TLDLLVENMGRVNYGAYINDFKGLVSNLTLSSNILTDWTIFPLDTEDAVRSHLGGWGHRD 508
Query: 573 IGLDKISLANSSFWKQGSTLPVNKSLIWYKTTFLAPEGKGPLA----LNLASMGKGQAWV 628
G + A++S TLP +Y F P G L + KGQ W+
Sbjct: 509 SGHHDEAWAHNS---SNYTLPA-----FYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWI 560
Query: 629 NGQSIGRYWSA 639
NG ++GRYW A
Sbjct: 561 NGFNLGRYWPA 571
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 148/307 (48%), Gaps = 25/307 (8%)
Query: 14 IDGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRF 73
+DGK + SG+IHY R PE W + K G +ETYV WN HEP G+++FEG
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 74 DLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFL 133
DL +F++ Q+ GL+ +R P+ CAEW +GG P WL ++ R+++ + E + R+
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWL-LTKNMRIRSSDPAYIEAVGRYY 130
Query: 134 AKIIDLMKQENLFASQGGPIILAQVENEYGNV--EWAYGVGGELYVKWAADTAVNLNTSV 191
+++ + GG I++ QVENEYG+ + AY ++ T +
Sbjct: 131 DQLLPRLVPRL--LDNGGNILMMQVENEYGSYGEDKAYLRAIRQLMEECGVTCPLFTSDG 188
Query: 192 PWVMCQQEDA--PDPIINTCN---------GFYCDGFTPNSPSKPIMWTENYSGWFLSFG 240
PW + + + T N + F + P+M E + GWF +
Sbjct: 189 PWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDGWFNRWK 248
Query: 241 YAVPFRPVEDLAFAVARFFETGGTFQNYYMYFGGTNFGRTAG----GPL---VATSYDYD 293
+ R ++LA AV E G N YM+ GGTNFG G G L TSYDYD
Sbjct: 249 EPIITRDPKELADAVREVLEQGSI--NLYMFHGGTNFGFMNGCSARGTLDLPQVTSYDYD 306
Query: 294 APIDEYG 300
A +DE G
Sbjct: 307 ALLDEEG 313
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 83/205 (40%), Gaps = 57/205 (27%)
Query: 513 NEGINTLDILSMMVGLQNYGAWF--DVAGAGLFSVILIDLK---NGKRDLSSGEWIYQVG 567
+G++ LDIL +G NYG F D G+ + + DL N K Y +
Sbjct: 437 KKGLSRLDILIENMGRVNYGHKFLADTQRKGIRTGVCKDLHFLLNWKH--------YPLP 488
Query: 568 VEGEYIGLDKISLANSSFWKQGSTLPVNKSLIWYKTTFLAPEGKGPLALNLASMGKGQAW 627
++ +KI + W QG +Y F E K L+L+ GKG A+
Sbjct: 489 LDNP----EKIDFSKG--WTQGQP-------AFYAYDFTVEEPKDTY-LDLSEFGKGVAF 534
Query: 628 VNGQSIGRYWSAYLAPSTGCTKKCDYRGSYDASKCQKHCGQPAQTLYHIPRTWVHPGENL 687
VNGQ++GR+W+ P +LY IP +++ G N
Sbjct: 535 VNGQNLGRFWNV----------------------------GPTLSLY-IPHSYLKEGANR 565
Query: 688 LVIHEELGGDPSKISLLTK-TGQHI 711
++I E G +I L K T +HI
Sbjct: 566 IIIFETEGQYKEEIHLTRKPTLKHI 590
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 109/363 (30%), Positives = 157/363 (43%), Gaps = 40/363 (11%)
Query: 1 LSANVTYDHRALVIDGKRRVLQSGSIH-YPRSTPEVWPELIRKSKEGGLEVIETYVFWNY 59
L VT+D ++ ++G+R ++ SG +H Y ++ ++ K K G + YV W
Sbjct: 2 LQKYVTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWAL 61
Query: 60 HEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFR 119
E G Y EG FDL F +EAG++L R GPY AE + GGFP WL + GI R
Sbjct: 62 LEGNPGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LR 120
Query: 120 TTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWAY-GVGGELYVK 178
T++ + + + + I + + + + GGPIIL Q ENEY Y G Y++
Sbjct: 121 TSDEAYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQ 178
Query: 179 WAADTAVNLNTSVPWVM----CQQEDAPDPIINTCN---------GFYC-------DGFT 218
+ D A + VP++ +AP + GF C G
Sbjct: 179 YIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNL 238
Query: 219 PN---------SPSKPIMWTENYSGWFLSFGYAVPFRPVEDLAFAVARF-----FETGGT 264
P SPS P E G F +G + L R F G
Sbjct: 239 PTYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVA 298
Query: 265 FQNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRELHKAIKLCEEYL 324
F N YM FGGTN+G G P TSYDY + I E I + K+ L+ L K+ YL
Sbjct: 299 FLNLYMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYL 357
Query: 325 ISS 327
+++
Sbjct: 358 VAN 360
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 171/408 (41%), Gaps = 55/408 (13%)
Query: 5 VTYDHRALVIDGKRRVLQSGSIH-YPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPI 63
VT+D +L + G+R V+ SG +H + P ++ ++ K K G + YV W E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 64 RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNN 123
G++ +G F L F + +AG++L R GPY AE + GGFP WL + G + RT
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAP 144
Query: 124 PFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWAYGVGGELYVKWAADT 183
+ ++A I ++ + + + GGP+IL Q ENEY + Y+++ D
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 184 AVNLNTSVPWV--------MCQQEDAPDPIINTCNGFYCDGFTPNSPSK------PIMWT 229
A N VP + + + Y GF PS P W
Sbjct: 203 ARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWR 262
Query: 230 ENYSGWFLSFGYAVPFRPVEDLAFAVARF----FE--------------------TGGTF 265
+++ L+ + PF VE A F FE G T
Sbjct: 263 QDH----LNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTI 318
Query: 266 QNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRELHKAIKLCEEYLI 325
N YM FGGTN+G G P TSYDY A I E I + K+ L+ + +K+ Y I
Sbjct: 319 FNIYMTFGGTNWGNL-GHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSPGY-I 376
Query: 326 SSDPTHQKLGAKLEAH------IYHKSSNDCAAFL-ANYDSSSDANVT 366
++ P + G ++ + K S D ANY S+ A+ T
Sbjct: 377 TATPENATQGVYSDSQNIVITPLLAKESGDFFVVRHANYSSTDTASYT 424
>pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2- (4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta- 1,4-Xylotriose)
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1BG4|A Chain A, Xylanase From Penicillium Simplicissimum
Length = 302
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 24/136 (17%)
Query: 52 ETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLH 111
E + W+ EP RGQ+ F G LV F Q G + G VW
Sbjct: 47 ENSMKWDATEPNRGQFTFSGSDYLVNF---AQSNGKLIR-------------GHTLVWHS 90
Query: 112 FIPG-IQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWA-- 168
+PG + T N +K + ++ K + ++A +L ++ NE G++ +
Sbjct: 91 QLPGWVSSITDKNTLISVLKNHITTVMTRYKGK-IYAWD----VLNEIFNEDGSLRNSVF 145
Query: 169 YGVGGELYVKWAADTA 184
Y V GE YV+ A +TA
Sbjct: 146 YNVIGEDYVRIAFETA 161
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 5 VTYDHR-ALVIDGKRRVLQSGSIH----YPRSTPEVWPELIRKSKEGGLEVIETYVFWNY 59
VT D R AL +DG + + ++ +P +VWP + ++ G ++ + W
Sbjct: 43 VTKDGRHALXVDGAPFLXLAAQVNNSSAWPSQXAKVWPAI----EKVGANTVQVPIAWEQ 98
Query: 60 HEPIRGQYYF 69
EP+ GQ+ F
Sbjct: 99 IEPVEGQFDF 108
>pdb|3G7N|A Chain A, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
pdb|3G7N|B Chain B, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
Length = 258
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 476 IESLGHAALV--FVNKKLV-----AFGYGNHDFANFLINKKIELNEGINTLDIL-----S 523
+ S+ H AL F +K LV AF GN +A+F + N G N LD + S
Sbjct: 137 LTSIAHVALAQNFPDKSLVSNALNAFPIGNQAWADFGTAQAGTFNRGNNVLDGVPNMYSS 196
Query: 524 MMVGLQNYGAWFDVAGAGLFSVILIDLKNGKRD--LSSGEWIYQV 566
+V ++YG + +G +V G+RD S+G +Y V
Sbjct: 197 PLVNFKHYGTEYYSSGTEASTVKC----EGQRDKSCSAGNGMYAV 237
>pdb|4HV4|A Chain A, 2.25 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylmuramate--L- Alanine Ligase (Murc) From
Yersinia Pestis Co92 In Complex With Amp
pdb|4HV4|B Chain B, 2.25 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylmuramate--L- Alanine Ligase (Murc) From
Yersinia Pestis Co92 In Complex With Amp
Length = 494
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 480 GHAALVFVNKKLVAFGY---GNHDFANFLINKKIELNEGINTLDILSMMVGLQNYGAWFD 536
GH L +K L+ G H+ N + EGI DIL +VG Q G FD
Sbjct: 273 GHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFD 332
Query: 537 VAG 539
G
Sbjct: 333 FLG 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,809,710
Number of Sequences: 62578
Number of extensions: 1299962
Number of successful extensions: 3058
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3025
Number of HSP's gapped (non-prelim): 24
length of query: 821
length of database: 14,973,337
effective HSP length: 107
effective length of query: 714
effective length of database: 8,277,491
effective search space: 5910128574
effective search space used: 5910128574
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)