Query 037925
Match_columns 821
No_of_seqs 333 out of 1649
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:47:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 1E-221 3E-226 1915.3 74.8 804 2-820 27-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 7E-155 2E-159 1305.1 41.9 629 2-718 17-649 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.7E-91 3.7E-96 764.4 20.3 297 11-316 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 1.7E-39 3.6E-44 377.8 15.2 289 5-302 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 1.8E-20 3.8E-25 210.3 15.1 263 26-319 2-373 (374)
6 PF02140 Gal_Lectin: Galactose 99.8 2.3E-19 5E-24 157.9 4.1 75 741-819 1-80 (80)
7 KOG4729 Galactoside-binding le 99.7 1E-17 2.3E-22 172.7 7.9 85 733-820 40-130 (265)
8 PF02836 Glyco_hydro_2_C: Glyc 99.2 1.2E-09 2.5E-14 119.3 18.9 150 5-195 1-156 (298)
9 PRK10150 beta-D-glucuronidase; 99.0 4.7E-08 1E-12 116.8 25.0 157 4-195 277-447 (604)
10 PF13364 BetaGal_dom4_5: Beta- 98.9 1.9E-09 4.2E-14 101.0 7.3 69 595-691 33-104 (111)
11 PF00150 Cellulase: Cellulase 98.8 3.7E-08 8E-13 105.1 14.6 160 15-196 4-171 (281)
12 PRK10340 ebgA cryptic beta-D-g 98.7 3.3E-07 7.1E-12 115.2 18.5 186 4-232 319-514 (1021)
13 PF13364 BetaGal_dom4_5: Beta- 98.6 1.9E-07 4E-12 87.6 10.1 84 443-528 24-110 (111)
14 PRK09525 lacZ beta-D-galactosi 98.6 7.8E-07 1.7E-11 111.7 18.4 145 4-194 335-486 (1027)
15 COG3250 LacZ Beta-galactosidas 98.4 2.9E-06 6.3E-11 103.3 15.5 134 4-184 285-424 (808)
16 PF02837 Glyco_hydro_2_N: Glyc 98.1 2.1E-05 4.6E-10 78.2 11.4 98 449-548 63-164 (167)
17 smart00633 Glyco_10 Glycosyl h 98.0 1.4E-05 3.1E-10 85.4 8.6 117 57-198 3-126 (254)
18 PLN02705 beta-amylase 97.9 3.1E-05 6.7E-10 89.4 9.1 81 32-118 266-358 (681)
19 PLN02905 beta-amylase 97.9 4.4E-05 9.6E-10 88.3 9.3 80 33-118 285-376 (702)
20 PLN02801 beta-amylase 97.8 5.7E-05 1.2E-09 86.1 9.2 80 32-117 35-126 (517)
21 PLN00197 beta-amylase; Provisi 97.8 7.3E-05 1.6E-09 85.8 9.4 81 32-118 125-217 (573)
22 PF03198 Glyco_hydro_72: Gluca 97.7 0.0003 6.5E-09 76.5 12.9 152 4-193 10-179 (314)
23 PLN02803 beta-amylase 97.7 0.00011 2.4E-09 84.2 9.4 80 33-118 106-197 (548)
24 PLN02161 beta-amylase 97.7 0.00014 3.1E-09 82.9 9.6 80 33-118 116-207 (531)
25 TIGR03356 BGL beta-galactosida 97.7 4.4E-05 9.5E-10 87.8 5.3 96 34-141 54-150 (427)
26 PF01373 Glyco_hydro_14: Glyco 97.5 0.00015 3.2E-09 81.4 6.5 114 35-158 17-152 (402)
27 PF13204 DUF4038: Protein of u 97.5 0.00042 9E-09 75.8 9.6 225 9-263 2-274 (289)
28 COG3693 XynA Beta-1,4-xylanase 97.1 0.0038 8.3E-08 68.0 10.9 133 43-198 55-194 (345)
29 PF00331 Glyco_hydro_10: Glyco 97.0 0.001 2.2E-08 73.8 6.1 157 21-198 11-179 (320)
30 PF02837 Glyco_hydro_2_N: Glyc 96.8 0.0026 5.7E-08 63.1 6.3 67 595-691 66-136 (167)
31 PF14488 DUF4434: Domain of un 96.7 0.022 4.7E-07 57.4 12.2 135 29-194 15-158 (166)
32 PF00232 Glyco_hydro_1: Glycos 96.5 0.00083 1.8E-08 78.0 1.0 96 34-141 58-155 (455)
33 COG2730 BglC Endoglucanase [Ca 96.3 0.012 2.6E-07 67.5 8.7 117 32-164 66-193 (407)
34 PRK09852 cryptic 6-phospho-bet 96.1 0.0042 9.1E-08 72.4 4.0 100 34-141 71-173 (474)
35 PRK10150 beta-D-glucuronidase; 96.1 0.02 4.2E-07 69.0 9.8 74 451-526 62-137 (604)
36 PF07745 Glyco_hydro_53: Glyco 96.1 0.016 3.6E-07 64.4 8.4 104 37-164 27-137 (332)
37 PRK10340 ebgA cryptic beta-D-g 96.1 0.024 5.2E-07 72.1 10.4 91 454-549 109-205 (1021)
38 PRK15014 6-phospho-beta-glucos 96.0 0.0069 1.5E-07 70.7 4.8 96 34-141 69-167 (477)
39 PLN02998 beta-glucosidase 95.9 0.0075 1.6E-07 70.7 4.6 100 34-141 82-183 (497)
40 PLN02814 beta-glucosidase 95.7 0.01 2.2E-07 69.8 4.4 100 34-141 77-178 (504)
41 PRK09525 lacZ beta-D-galactosi 95.6 0.048 1E-06 69.4 10.5 92 453-549 119-217 (1027)
42 PRK13511 6-phospho-beta-galact 95.6 0.011 2.4E-07 69.0 4.5 99 34-141 54-153 (469)
43 PRK09593 arb 6-phospho-beta-gl 95.6 0.015 3.2E-07 68.1 5.3 100 34-141 73-175 (478)
44 TIGR01233 lacG 6-phospho-beta- 95.5 0.014 3.1E-07 68.1 4.8 97 34-138 53-150 (467)
45 PRK09589 celA 6-phospho-beta-g 95.4 0.017 3.6E-07 67.6 4.9 100 34-141 67-169 (476)
46 PLN02849 beta-glucosidase 95.4 0.015 3.3E-07 68.4 4.4 100 34-141 79-180 (503)
47 COG3867 Arabinogalactan endo-1 94.9 0.13 2.8E-06 55.6 9.3 118 36-171 65-191 (403)
48 PF14871 GHL6: Hypothetical gl 94.2 0.24 5.3E-06 48.0 8.7 98 38-140 4-123 (132)
49 COG2723 BglB Beta-glucosidase/ 93.8 0.068 1.5E-06 61.6 4.8 100 34-141 59-161 (460)
50 PF02638 DUF187: Glycosyl hydr 92.3 0.5 1.1E-05 52.4 8.7 119 32-160 17-162 (311)
51 PRK09936 hypothetical protein; 91.6 0.37 8.1E-06 52.3 6.4 57 30-92 34-91 (296)
52 smart00642 Aamy Alpha-amylase 91.5 0.43 9.2E-06 48.1 6.4 66 35-100 20-97 (166)
53 smart00812 Alpha_L_fucos Alpha 91.5 18 0.0004 41.4 20.2 246 26-323 76-336 (384)
54 TIGR00542 hxl6Piso_put hexulos 91.3 2.8 6E-05 45.3 13.0 127 33-191 15-149 (279)
55 TIGR01515 branching_enzym alph 91.2 2.3 5E-05 51.6 13.4 70 24-93 142-226 (613)
56 COG3934 Endo-beta-mannanase [C 90.2 0.21 4.5E-06 57.2 3.0 158 11-186 3-169 (587)
57 PRK05402 glycogen branching en 87.2 5.7 0.00012 49.2 12.9 53 41-93 273-335 (726)
58 PRK14706 glycogen branching en 87.1 6.6 0.00014 47.9 13.1 53 41-93 175-237 (639)
59 PRK09441 cytoplasmic alpha-amy 86.5 1 2.2E-05 52.9 5.6 61 33-93 18-101 (479)
60 PRK13210 putative L-xylulose 5 86.3 4.9 0.00011 43.2 10.5 131 34-191 16-149 (284)
61 PRK01060 endonuclease IV; Prov 85.7 10 0.00022 40.9 12.5 93 36-157 14-109 (281)
62 PLN02447 1,4-alpha-glucan-bran 85.7 1.3 2.7E-05 54.6 6.1 60 34-94 251-321 (758)
63 PRK12568 glycogen branching en 85.6 11 0.00023 46.7 13.8 55 39-95 275-341 (730)
64 PF01261 AP_endonuc_2: Xylose 83.0 2.1 4.6E-05 43.1 5.5 124 40-191 1-128 (213)
65 cd00019 AP2Ec AP endonuclease 82.5 10 0.00022 40.8 10.9 97 34-159 10-107 (279)
66 PF01229 Glyco_hydro_39: Glyco 82.4 6.2 0.00014 46.5 9.8 67 23-94 28-105 (486)
67 PF14307 Glyco_tran_WbsX: Glyc 82.1 14 0.00029 41.7 12.0 135 32-196 56-196 (345)
68 TIGR02402 trehalose_TreZ malto 81.9 2.2 4.8E-05 51.0 5.9 53 38-93 115-180 (542)
69 PF13200 DUF4015: Putative gly 81.9 5.2 0.00011 44.6 8.3 109 32-144 11-137 (316)
70 PRK14705 glycogen branching en 81.5 21 0.00045 46.7 14.5 55 39-93 771-835 (1224)
71 PF05913 DUF871: Bacterial pro 81.3 2.5 5.5E-05 47.8 5.7 70 22-97 2-71 (357)
72 PF00128 Alpha-amylase: Alpha 81.0 1.5 3.3E-05 46.9 3.8 57 37-93 7-72 (316)
73 PRK12313 glycogen branching en 80.5 2.8 6E-05 51.1 6.2 54 40-93 177-240 (633)
74 PRK13209 L-xylulose 5-phosphat 79.3 12 0.00027 40.2 10.2 126 34-191 21-154 (283)
75 TIGR03234 OH-pyruv-isom hydrox 78.4 31 0.00068 36.5 12.8 43 35-91 15-57 (254)
76 TIGR02631 xylA_Arthro xylose i 77.6 33 0.00071 39.3 13.3 92 32-141 30-125 (382)
77 PLN02960 alpha-amylase 76.5 4.6 9.9E-05 50.4 6.3 56 38-93 421-486 (897)
78 TIGR02104 pulA_typeI pullulana 76.4 4 8.7E-05 49.4 5.8 55 38-93 168-249 (605)
79 cd06593 GH31_xylosidase_YicI Y 76.4 5.3 0.00012 44.0 6.4 69 31-99 21-92 (308)
80 PRK09856 fructoselysine 3-epim 76.1 33 0.00071 36.7 12.2 131 34-191 13-145 (275)
81 TIGR02403 trehalose_treC alpha 74.8 4.3 9.4E-05 48.5 5.5 59 35-93 28-95 (543)
82 TIGR01531 glyc_debranch glycog 74.3 10 0.00022 49.6 8.7 113 11-129 104-236 (1464)
83 COG1649 Uncharacterized protei 74.2 21 0.00045 41.3 10.4 122 32-163 62-210 (418)
84 PRK09505 malS alpha-amylase; R 73.2 5.9 0.00013 48.6 6.1 58 36-93 232-312 (683)
85 PF14683 CBM-like: Polysacchar 72.9 3.6 7.7E-05 41.6 3.5 64 620-696 91-154 (167)
86 PF13199 Glyco_hydro_66: Glyco 72.7 51 0.0011 39.7 13.5 80 33-112 117-211 (559)
87 PF11875 DUF3395: Domain of un 72.1 8.2 0.00018 38.4 5.8 67 752-819 55-133 (151)
88 smart00518 AP2Ec AP endonuclea 71.8 50 0.0011 35.3 12.3 92 36-157 12-104 (273)
89 PRK10785 maltodextrin glucosid 71.3 7.3 0.00016 47.2 6.3 57 37-93 182-246 (598)
90 cd04908 ACT_Bt0572_1 N-termina 71.2 14 0.0003 30.8 6.3 55 33-91 12-66 (66)
91 PRK10933 trehalose-6-phosphate 70.6 7.7 0.00017 46.5 6.2 55 36-93 35-101 (551)
92 TIGR02456 treS_nterm trehalose 70.6 7.8 0.00017 46.3 6.3 55 35-92 29-95 (539)
93 PF06832 BiPBP_C: Penicillin-B 70.6 8.5 0.00018 34.3 5.1 51 471-529 33-84 (89)
94 PRK14582 pgaB outer membrane N 69.9 16 0.00034 44.8 8.7 110 34-161 334-467 (671)
95 PRK09989 hypothetical protein; 69.9 37 0.0008 36.2 10.7 43 35-91 16-58 (258)
96 PRK09997 hydroxypyruvate isome 69.5 63 0.0014 34.4 12.4 50 25-91 9-58 (258)
97 KOG0496 Beta-galactosidase [Ca 68.6 1.4 2.9E-05 52.7 -0.6 81 706-799 308-389 (649)
98 KOG2024 Beta-Glucuronidase GUS 67.7 9 0.00019 41.3 5.2 56 440-495 71-133 (297)
99 cd06589 GH31 The enzymes of gl 66.7 17 0.00037 39.2 7.4 65 32-97 22-90 (265)
100 PF03659 Glyco_hydro_71: Glyco 65.0 25 0.00055 40.3 8.7 53 32-93 15-67 (386)
101 TIGR00677 fadh2_euk methylenet 63.5 22 0.00048 38.9 7.5 108 20-141 130-250 (281)
102 TIGR02401 trehalose_TreY malto 63.4 13 0.00029 46.4 6.4 64 32-95 14-87 (825)
103 PF02679 ComA: (2R)-phospho-3- 63.4 10 0.00022 40.7 4.7 52 33-94 83-134 (244)
104 TIGR02100 glgX_debranch glycog 62.7 10 0.00022 46.8 5.2 55 39-93 189-265 (688)
105 KOG2230 Predicted beta-mannosi 62.7 26 0.00057 41.5 8.1 149 10-198 328-494 (867)
106 COG0296 GlgB 1,4-alpha-glucan 62.6 13 0.00027 45.1 5.9 55 34-92 165-233 (628)
107 cd06595 GH31_xylosidase_XylS-l 62.2 26 0.00057 38.4 7.9 65 32-96 23-97 (292)
108 PF01261 AP_endonuc_2: Xylose 61.6 45 0.00099 33.3 9.1 103 35-165 28-137 (213)
109 PF01791 DeoC: DeoC/LacD famil 61.2 4 8.6E-05 43.2 1.3 53 37-92 79-131 (236)
110 PF11324 DUF3126: Protein of u 60.1 19 0.00042 30.5 4.8 32 478-509 25-58 (63)
111 cd06565 GH20_GcnA-like Glycosy 60.0 44 0.00096 36.9 9.2 67 32-101 15-88 (301)
112 PLN02361 alpha-amylase 59.1 18 0.0004 41.6 6.2 57 37-93 32-96 (401)
113 KOG0626 Beta-glucosidase, lact 58.2 18 0.0004 42.7 6.0 113 35-157 92-208 (524)
114 cd06598 GH31_transferase_CtsZ 58.1 21 0.00045 39.7 6.3 67 32-98 22-95 (317)
115 cd06592 GH31_glucosidase_KIAA1 57.7 24 0.00053 38.9 6.7 68 29-99 25-96 (303)
116 cd06591 GH31_xylosidase_XylS X 57.4 20 0.00043 39.9 6.0 66 32-98 22-91 (319)
117 PF08308 PEGA: PEGA domain; I 57.0 11 0.00025 31.8 3.2 39 473-521 3-41 (71)
118 PF02065 Melibiase: Melibiase; 56.4 1.1E+02 0.0023 35.4 11.7 89 27-115 51-148 (394)
119 COG1306 Uncharacterized conser 56.4 20 0.00043 39.4 5.4 59 32-93 75-144 (400)
120 TIGR03849 arch_ComA phosphosul 56.3 34 0.00074 36.6 7.2 52 34-95 71-122 (237)
121 PRK14511 maltooligosyl trehalo 56.2 21 0.00045 45.0 6.4 61 32-96 18-92 (879)
122 cd06602 GH31_MGAM_SI_GAA This 56.1 21 0.00045 40.2 5.9 74 26-100 13-93 (339)
123 PRK14510 putative bifunctional 55.9 15 0.00034 48.1 5.5 56 38-93 191-267 (1221)
124 TIGR02102 pullulan_Gpos pullul 55.2 20 0.00043 46.4 6.2 21 73-93 555-575 (1111)
125 cd06603 GH31_GANC_GANAB_alpha 54.0 23 0.0005 39.7 5.8 74 26-100 13-91 (339)
126 cd06601 GH31_lyase_GLase GLase 54.0 51 0.0011 37.0 8.5 72 26-98 13-89 (332)
127 PRK13398 3-deoxy-7-phosphohept 54.0 41 0.00089 36.6 7.5 76 11-93 20-98 (266)
128 cd06568 GH20_SpHex_like A subg 53.2 1.1E+02 0.0025 34.2 11.1 62 32-93 16-95 (329)
129 PRK12677 xylose isomerase; Pro 52.3 1.3E+02 0.0028 34.6 11.5 90 34-141 31-124 (384)
130 cd06600 GH31_MGAM-like This fa 51.5 27 0.00058 38.9 5.8 72 26-98 13-89 (317)
131 PF14587 Glyco_hydr_30_2: O-Gl 51.1 78 0.0017 36.3 9.3 139 44-198 57-227 (384)
132 PF01120 Alpha_L_fucos: Alpha- 50.8 4.1E+02 0.0089 29.9 16.6 240 30-322 90-342 (346)
133 PRK14507 putative bifunctional 50.8 27 0.00058 47.1 6.4 61 32-95 756-829 (1693)
134 cd06545 GH18_3CO4_chitinase Th 50.7 63 0.0014 34.5 8.3 96 64-188 36-132 (253)
135 cd06416 GH25_Lys1-like Lys-1 i 50.3 40 0.00087 34.5 6.5 88 24-114 56-158 (196)
136 PRK03705 glycogen debranching 50.2 24 0.00052 43.3 5.6 55 39-93 184-262 (658)
137 PLN00196 alpha-amylase; Provis 50.1 32 0.00069 40.1 6.3 57 37-93 47-112 (428)
138 PF01055 Glyco_hydro_31: Glyco 49.6 25 0.00054 40.6 5.4 69 32-101 41-111 (441)
139 cd06599 GH31_glycosidase_Aec37 49.3 38 0.00083 37.6 6.6 66 33-98 28-98 (317)
140 cd06604 GH31_glucosidase_II_Ma 48.1 34 0.00073 38.4 6.0 73 26-99 13-90 (339)
141 TIGR02103 pullul_strch alpha-1 47.9 28 0.00062 44.1 5.8 21 73-93 404-424 (898)
142 cd06418 GH25_BacA-like BacA is 47.2 73 0.0016 33.5 7.9 90 32-143 50-140 (212)
143 PRK08673 3-deoxy-7-phosphohept 45.7 55 0.0012 36.9 7.1 76 11-93 86-164 (335)
144 PF08531 Bac_rhamnosid_N: Alph 44.8 33 0.00072 34.6 4.8 23 615-637 7-29 (172)
145 PF08531 Bac_rhamnosid_N: Alph 44.3 85 0.0018 31.6 7.7 56 472-528 6-68 (172)
146 KOG0259 Tyrosine aminotransfer 42.7 33 0.00072 39.1 4.7 64 25-92 173-238 (447)
147 PF02228 Gag_p19: Major core p 41.8 11 0.00024 33.2 0.6 39 32-87 20-58 (92)
148 PLN02877 alpha-amylase/limit d 41.6 45 0.00097 42.6 6.1 21 73-93 466-486 (970)
149 cd06597 GH31_transferase_CtsY 41.6 54 0.0012 36.9 6.3 73 26-98 13-110 (340)
150 COG3623 SgaU Putative L-xylulo 41.5 2.6E+02 0.0055 30.2 10.5 97 33-158 17-115 (287)
151 COG0366 AmyA Glycosidases [Car 41.0 32 0.0007 39.9 4.6 56 38-93 33-97 (505)
152 PRK10076 pyruvate formate lyas 38.1 1.1E+02 0.0023 32.3 7.4 126 33-192 53-210 (213)
153 cd02742 GH20_hexosaminidase Be 37.7 1E+02 0.0022 34.0 7.7 60 31-93 13-92 (303)
154 PF07691 PA14: PA14 domain; I 37.7 2E+02 0.0042 27.2 8.8 70 455-527 47-122 (145)
155 PLN03059 beta-galactosidase; P 37.3 1.4E+02 0.0031 37.6 9.4 44 595-638 468-518 (840)
156 COG1523 PulA Type II secretory 36.7 49 0.0011 40.8 5.3 54 40-93 206-285 (697)
157 cd08560 GDPD_EcGlpQ_like_1 Gly 36.2 1E+02 0.0022 35.0 7.4 53 35-93 246-298 (356)
158 PRK13209 L-xylulose 5-phosphat 35.6 1.7E+02 0.0038 31.3 8.9 103 31-163 54-161 (283)
159 KOG4729 Galactoside-binding le 35.3 48 0.001 35.8 4.3 77 740-820 146-231 (265)
160 TIGR00433 bioB biotin syntheta 34.7 56 0.0012 35.4 5.0 52 37-92 123-177 (296)
161 TIGR00676 fadh2 5,10-methylene 34.5 1.5E+02 0.0032 32.2 8.2 109 19-141 125-246 (272)
162 PF00728 Glyco_hydro_20: Glyco 34.2 70 0.0015 35.5 5.8 59 32-93 16-93 (351)
163 PRK09267 flavodoxin FldA; Vali 33.0 2.9E+02 0.0064 27.2 9.5 73 15-90 45-117 (169)
164 PF12876 Cellulase-like: Sugar 32.8 75 0.0016 28.3 4.6 47 149-195 7-62 (88)
165 COG3589 Uncharacterized conser 32.4 84 0.0018 35.3 5.7 72 22-100 4-76 (360)
166 PLN02784 alpha-amylase 32.3 85 0.0019 39.6 6.3 56 37-93 524-588 (894)
167 KOG3833 Uncharacterized conser 32.2 45 0.00098 36.9 3.5 53 35-93 444-499 (505)
168 COG1735 Php Predicted metal-de 32.1 2E+02 0.0043 32.1 8.4 120 38-197 52-172 (316)
169 cd04882 ACT_Bt0572_2 C-termina 31.8 98 0.0021 24.9 4.9 55 33-89 10-64 (65)
170 PRK09432 metF 5,10-methylenete 30.4 98 0.0021 34.2 6.0 89 39-142 168-266 (296)
171 cd06415 GH25_Cpl1-like Cpl-1 l 30.3 1.9E+02 0.0041 29.7 7.7 99 15-115 20-157 (196)
172 PRK09856 fructoselysine 3-epim 30.3 58 0.0013 34.8 4.2 55 35-93 91-149 (275)
173 cd06547 GH85_ENGase Endo-beta- 30.1 91 0.002 35.2 5.7 108 49-192 31-140 (339)
174 cd01299 Met_dep_hydrolase_A Me 29.9 97 0.0021 34.1 5.9 61 32-93 118-180 (342)
175 PF08924 DUF1906: Domain of un 29.2 1.2E+02 0.0026 29.5 5.7 88 32-143 36-128 (136)
176 TIGR00587 nfo apurinic endonuc 29.1 3.4E+02 0.0074 29.3 9.8 83 37-141 14-98 (274)
177 TIGR01698 PUNP purine nucleoti 29.0 77 0.0017 34.0 4.6 40 13-52 47-87 (237)
178 PRK08645 bifunctional homocyst 28.7 1.7E+02 0.0036 35.8 8.1 111 15-141 459-578 (612)
179 COG2884 FtsE Predicted ATPase 28.4 49 0.0011 34.6 2.9 16 622-637 55-70 (223)
180 PF14701 hDGE_amylase: glucano 28.1 1.6E+02 0.0034 34.4 7.2 109 27-141 13-143 (423)
181 PF02055 Glyco_hydro_30: O-Gly 28.1 2E+02 0.0044 34.2 8.3 275 17-318 74-424 (496)
182 TIGR02455 TreS_stutzeri trehal 27.7 1.4E+02 0.003 36.7 6.8 75 32-110 76-175 (688)
183 PRK12331 oxaloacetate decarbox 27.6 1.2E+02 0.0027 35.5 6.4 55 26-92 88-142 (448)
184 cd06563 GH20_chitobiase-like T 27.4 2.2E+02 0.0048 32.1 8.3 60 31-93 15-106 (357)
185 PRK12858 tagatose 1,6-diphosph 27.3 73 0.0016 36.0 4.3 66 25-93 98-163 (340)
186 cd00537 MTHFR Methylenetetrahy 26.4 1.7E+02 0.0038 31.5 7.0 90 38-141 151-249 (274)
187 PRK13210 putative L-xylulose 5 26.2 83 0.0018 33.7 4.4 60 34-94 94-154 (284)
188 PLN02763 hydrolase, hydrolyzin 25.8 1.6E+02 0.0036 37.8 7.4 74 26-100 190-268 (978)
189 COG1082 IolE Sugar phosphate i 25.7 6.5E+02 0.014 26.4 11.2 51 32-91 13-63 (274)
190 PRK06703 flavodoxin; Provision 25.6 3.4E+02 0.0073 26.3 8.2 96 16-141 48-148 (151)
191 COG1891 Uncharacterized protei 25.5 23 0.0005 36.1 -0.0 64 19-92 116-186 (235)
192 PLN02389 biotin synthase 25.3 88 0.0019 35.9 4.6 52 36-90 177-230 (379)
193 KOG1065 Maltase glucoamylase a 25.1 1.2E+02 0.0025 38.0 5.7 71 26-99 300-377 (805)
194 KOG0622 Ornithine decarboxylas 24.9 99 0.0021 35.7 4.7 67 31-107 190-257 (448)
195 PRK10658 putative alpha-glucos 24.8 1.7E+02 0.0037 36.2 7.2 66 33-98 282-350 (665)
196 PTZ00372 endonuclease 4-like p 24.8 3.5E+02 0.0076 31.5 9.3 78 38-141 145-228 (413)
197 PF02606 LpxK: Tetraacyldisacc 24.4 1.2E+02 0.0027 33.9 5.4 58 13-86 224-281 (326)
198 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.2 1.6E+02 0.0036 32.0 6.3 48 32-91 89-136 (275)
199 cd06562 GH20_HexA_HexB-like Be 24.2 3.2E+02 0.0069 30.8 8.7 63 31-93 15-90 (348)
200 TIGR03700 mena_SCO4494 putativ 24.0 57 0.0012 36.8 2.8 51 36-89 149-204 (351)
201 PRK09997 hydroxypyruvate isome 23.9 90 0.002 33.2 4.2 60 34-93 85-144 (258)
202 COG1663 LpxK Tetraacyldisaccha 23.7 67 0.0015 36.1 3.1 57 15-87 232-288 (336)
203 PF08306 Glyco_hydro_98M: Glyc 23.7 53 0.0012 36.5 2.3 90 20-134 104-201 (324)
204 cd06525 GH25_Lyc-like Lyc mura 23.7 55 0.0012 33.2 2.3 97 16-114 21-148 (184)
205 cd06594 GH31_glucosidase_YihQ 23.1 2.2E+02 0.0048 31.7 7.1 67 32-98 21-96 (317)
206 PF13380 CoA_binding_2: CoA bi 22.9 1.3E+02 0.0028 28.3 4.5 44 31-90 63-106 (116)
207 PF04914 DltD_C: DltD C-termin 22.3 69 0.0015 31.2 2.6 53 73-143 36-88 (130)
208 PRK07094 biotin synthase; Prov 22.3 77 0.0017 35.0 3.3 50 37-89 129-181 (323)
209 PTZ00372 endonuclease 4-like p 22.3 4.3E+02 0.0093 30.8 9.3 82 11-94 150-240 (413)
210 TIGR01210 conserved hypothetic 21.9 1.7E+02 0.0036 32.6 5.9 63 22-92 106-174 (313)
211 cd04886 ACT_ThrD-II-like C-ter 21.8 4.2E+02 0.0091 21.2 7.0 58 33-90 9-72 (73)
212 smart00854 PGA_cap Bacterial c 21.6 9.5E+02 0.02 25.2 11.3 45 37-90 63-107 (239)
213 cd06564 GH20_DspB_LnbB-like Gl 21.3 3E+02 0.0065 30.6 7.7 142 32-191 15-196 (326)
214 KOG0805 Carbon-nitrogen hydrol 21.2 2.7E+02 0.0058 30.2 6.7 53 74-134 38-90 (337)
215 PRK00042 tpiA triosephosphate 21.1 1.6E+02 0.0035 31.8 5.3 49 40-94 79-127 (250)
216 PRK14040 oxaloacetate decarbox 21.1 1.5E+02 0.0033 36.1 5.7 54 26-91 89-142 (593)
217 cd00311 TIM Triosephosphate is 21.0 1.7E+02 0.0037 31.4 5.4 49 40-94 77-125 (242)
218 cd04883 ACT_AcuB C-terminal AC 20.9 3.3E+02 0.0071 22.4 6.2 53 34-90 13-69 (72)
219 cd07944 DRE_TIM_HOA_like 4-hyd 20.9 1.5E+02 0.0032 32.2 5.0 45 37-93 85-129 (266)
220 TIGR03551 F420_cofH 7,8-dideme 20.9 77 0.0017 35.6 3.0 49 37-89 141-195 (343)
221 PF12733 Cadherin-like: Cadher 20.6 2.3E+02 0.005 24.7 5.4 55 458-524 16-71 (88)
222 smart00481 POLIIIAc DNA polyme 20.6 3.3E+02 0.0071 22.5 6.1 46 34-92 15-60 (67)
223 TIGR00542 hxl6Piso_put hexulos 20.5 1.3E+02 0.0028 32.3 4.6 58 35-93 95-153 (279)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.2e-221 Score=1915.32 Aligned_cols=804 Identities=54% Similarity=1.041 Sum_probs=749.8
Q ss_pred cceEEEecceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHH
Q 037925 2 SANVTYDHRALVIDGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKT 81 (821)
Q Consensus 2 ~~~v~~~~~~~~~dG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~ 81 (821)
+.+|+||+++|+|||+|++|+||||||||+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++||++
T Consensus 27 ~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~l 106 (840)
T PLN03059 27 SASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKV 106 (840)
T ss_pred eeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCceEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc
Q 037925 82 VQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENE 161 (821)
Q Consensus 82 a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 161 (821)
|+|+||||||||||||||||++||||+||++.|+|++||+||+|+++|++|+++|+++|+++++++++||||||+|||||
T Consensus 107 a~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENE 186 (840)
T PLN03059 107 VQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENE 186 (840)
T ss_pred HHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred ccccccccCCCcHHHHHHHHHHhHhcCCccceeeccCCCCCCcccccCCCcccCCCCCCCCCCCeEeeecccccccccCC
Q 037925 162 YGNVEWAYGVGGELYVKWAADTAVNLNTSVPWVMCQQEDAPDPIINTCNGFYCDGFTPNSPSKPIMWTENYSGWFLSFGY 241 (821)
Q Consensus 162 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~v~~~~ng~~~~~~~~~~~~~P~~~~E~~~Gwf~~wg~ 241 (821)
||++...++.+|++||+||+++++++|++|||+||++.++++++++||||.+|+.|.+.++.+|+||||||+|||++||+
T Consensus 187 YGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG~ 266 (840)
T PLN03059 187 YGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGG 266 (840)
T ss_pred ccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhhcCC
Confidence 99987777778999999999999999999999999998888899999999999999887787999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeeeeeeeecCCCCCCCCCCCCccccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhh
Q 037925 242 AVPFRPVEDLAFAVARFFETGGTFQNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRELHKAIKLCE 321 (821)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdAPL~E~G~~~tpKy~~lr~l~~~i~~~~ 321 (821)
+++.|+++|++.+++++|++|+|++|||||||||||||||||++++|||||||||+|+|++|+|||.+||++|++++.++
T Consensus 267 ~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~ 346 (840)
T PLN03059 267 AVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCE 346 (840)
T ss_pred CCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999889999999999999999999999999999999999997689999999999999998
Q ss_pred ccccCCCCcccccCCcceeeEeecCCCccceeecccCCCCcceEEeCCeeeecCCcceeecCCCcceeeccceeecccCC
Q 037925 322 EYLISSDPTHQKLGAKLEAHIYHKSSNDCAAFLANYDSSSDANVTFNGNVYFLPAWSVSILPDCKNVVFNTAKVISQRNN 401 (821)
Q Consensus 322 ~~l~~~~p~~~~lg~~~~~~~y~~~~~~~~~fl~N~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~v~~~t~~~~~~~~~ 401 (821)
+.|+..+|....||+.+++++|...+ .|++|+.|++.+.+++|.|+|++|.||+|||||||||+.++|+|+++.+|++.
T Consensus 347 ~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~~ 425 (840)
T PLN03059 347 PALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQ 425 (840)
T ss_pred ccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccccce
Confidence 88888888888999999999998666 79999999998889999999999999999999999999999999999999776
Q ss_pred CCCCcccchhhhHHhhhcccccccccc-ccccCCCcccCCchhhhcCCCCCCccEEEEEEEEecCCCC-----CcceeEE
Q 037925 402 GDHPFAQQKNVNELLLASSAFSWYEEK-VGISGNRSFVRPDLAEQINTTKDTSDYLWYTASIHVMPGQ-----GKEVFLN 475 (821)
Q Consensus 402 ~~~~p~~~~~~~~~~~~~~~w~~~~e~-~~~~~~~~~~~p~~~Eql~~t~d~~Gyl~Y~t~v~~~~~~-----~~~~~L~ 475 (821)
++..|.. ..+.|+.+.|+ ++...+.+++...++||+++|+|.+||+||||+|....++ +.+++|+
T Consensus 426 ~~~~~~~---------~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~ 496 (840)
T PLN03059 426 MKMNPVG---------STFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLT 496 (840)
T ss_pred eeccccc---------ccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEE
Confidence 6554332 45699999999 4455556777888999999999999999999999875532 2456799
Q ss_pred eCCcceEEEEEECCEEEEEEEcccCcceeEEeeeecccCCccEEEEEEeccCccccccccccccccee-EEEECceeCcc
Q 037925 476 IESLGHAALVFVNKKLVAFGYGNHDFANFLINKKIELNEGINTLDILSMMVGLQNYGAWFDVAGAGLF-SVILIDLKNGK 554 (821)
Q Consensus 476 v~~~~D~a~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~Gr~NyG~~l~~~~kGI~-~V~l~g~~~g~ 554 (821)
|.+++|++||||||+++|+++++.....++++.++.++.|.|+|+||||||||+|||++|+++.|||+ +|+|+|+++|.
T Consensus 497 v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~ 576 (840)
T PLN03059 497 IFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGT 576 (840)
T ss_pred EcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCc
Confidence 99999999999999999999998777788898888899999999999999999999999999999999 99999988888
Q ss_pred ccCCcCCceEeccCCcccccccccccCCCCCcccCCCCCCCccceEEEEEEeCCCCCCceEEeeCCCceEEEEECCeeee
Q 037925 555 RDLSSGEWIYQVGVEGEYIGLDKISLANSSFWKQGSTLPVNKSLIWYKTTFLAPEGKGPLALNLASMGKGQAWVNGQSIG 634 (821)
Q Consensus 555 ~~L~~~~W~~~~~l~ge~~~~~~~~~~~~~~W~~~~~~~~~~~~~~Yr~~F~~p~~~dp~~Ld~~g~gKG~vwVNG~nlG 634 (821)
.+|+++.|.|+++|+||.++|+.+++...++|.+.+..+..++|+|||++|++|++.|||||||+|||||+|||||+|||
T Consensus 577 ~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIG 656 (840)
T PLN03059 577 RDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIG 656 (840)
T ss_pred eecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccc
Confidence 99998889999999999999988766667899776544445679999999999999999999999999999999999999
Q ss_pred eecccccCCCCCCCccccCCCCcCccccccCCCCCceEEeecCCcccccCCceeEEEEecCCCCCcceeccccccccccc
Q 037925 635 RYWSAYLAPSTGCTKKCDYRGSYDASKCQKHCGQPAQTLYHIPRTWVHPGENLLVIHEELGGDPSKISLLTKTGQHICSF 714 (821)
Q Consensus 635 RYW~~~~~~~~G~~~~~~~~g~~~~~~~~~~~g~PQqtlYhVP~~~Lk~g~N~lvvfE~~g~~~~~I~l~~~~~~~~c~~ 714 (821)
|||+.+ +...|| +.|+|+|.|++.||+|+||+|||||||||++|||+|+|+||||||+|++|..|+|.++.++.||++
T Consensus 657 RYW~~~-a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~~~~c~~ 734 (840)
T PLN03059 657 RHWPAY-TAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTTDSVCAD 734 (840)
T ss_pred cccccc-cccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeecCccccc
Confidence 999763 334689 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCc--CCCCceEEecCCCCeEEEEeeecCCCCCCccCCcCCcccccC-cHHHHHhhcCCCCCcE
Q 037925 715 VSEADPPPVDSWKPNLGVV--SSSPQVRLACERGWHIAAINFASYGIPEGNCGSFRPGACHMD-VLPIVQKACVGQIECS 791 (821)
Q Consensus 715 ~~e~~~~~~~~~~~~~~~~--~~~~~~~L~C~~g~~i~~I~~A~yGr~~~~C~~~~~~~C~~~-s~~~v~~~C~Gk~~C~ 791 (821)
|+|+|| ++++|++.+... ...+.++|+|+.|++|+.|.||+||||.++|+++++++|+++ |+++|+++|+||++|+
T Consensus 735 ~~e~~p-~~~~w~~~~~~~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~vV~kaC~Gk~~Cs 813 (840)
T PLN03059 735 IFEGQP-ALKNWQIIASGKVNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAFERNCIGKQSCS 813 (840)
T ss_pred ccccCC-ccccccccccccccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHHHHHHCCCCCceE
Confidence 999995 699998854433 667889999999999988999999999999999999999999 9999999999999999
Q ss_pred EEecCCCCCCCCCCCCCcceEEEEEEEee
Q 037925 792 IPVSSAYLGVSAGACPGLLKALAVEAHCS 820 (821)
Q Consensus 792 v~a~~~~Fg~~~DPC~gt~KyL~v~y~C~ 820 (821)
|+|++.+||+ |||+||+|||+|+|.|+
T Consensus 814 V~asn~~Fgg--DPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 814 VTVAPEVFGG--DPCPDSMKKLSVEAVCS 840 (840)
T ss_pred EEeccceecC--CCCCCceeEEEEEEEeC
Confidence 9999999965 99999999999999995
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.1e-155 Score=1305.13 Aligned_cols=629 Identities=54% Similarity=0.992 Sum_probs=579.6
Q ss_pred cceEEEecceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHH
Q 037925 2 SANVTYDHRALVIDGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKT 81 (821)
Q Consensus 2 ~~~v~~~~~~~~~dG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~ 81 (821)
++.|+||+++|+|||+|++++||+|||+|++|++|+|+|+||||+|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCceEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc
Q 037925 82 VQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENE 161 (821)
Q Consensus 82 a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 161 (821)
|+++|||||||+||||||||++||+|.||...|++.+||+|++|+++|++|+++|+++++ +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccccCCCcHHHHHHHHHHhHhcCCccceeeccCCCCCCcccccCCCccc-CCCC-CCCCCCCeEeeeccccccccc
Q 037925 162 YGNVEWAYGVGGELYVKWAADTAVNLNTSVPWVMCQQEDAPDPIINTCNGFYC-DGFT-PNSPSKPIMWTENYSGWFLSF 239 (821)
Q Consensus 162 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~v~~~~ng~~~-~~~~-~~~~~~P~~~~E~~~Gwf~~w 239 (821)
||.+...|++..++|++|-+.|+...+.+|||+||.+.++|++++++|||.+| +.|. +++|++|+||||||+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99988778888999999999999999999999999999999999999999999 8887 899999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeeeeeeeecCCCCCCCCCCCCccccCCCCCCCCCCCCCCChhHHHHHHHHHHHhh
Q 037925 240 GYAVPFRPVEDLAFAVARFFETGGTFQNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRELHKAIKL 319 (821)
Q Consensus 240 g~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdAPL~E~G~~~tpKy~~lr~l~~~i~~ 319 (821)
|++++.|++++++..+++++++|+|++||||||||||||++|| ++.+|||||||||+ |..++|||.|+|.+|..+..
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999988899999999999999998 89999999999999 99999999999999999999
Q ss_pred hhccccCCCCcccccCCcceeeEeecCCCccceeecccCCCCcceEEeCCeeeecCCcceeecCCCcceeeccceeeccc
Q 037925 320 CEEYLISSDPTHQKLGAKLEAHIYHKSSNDCAAFLANYDSSSDANVTFNGNVYFLPAWSVSILPDCKNVVFNTAKVISQR 399 (821)
Q Consensus 320 ~~~~l~~~~p~~~~lg~~~~~~~y~~~~~~~~~fl~N~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~v~~~t~~~~~~~ 399 (821)
+++.+..+++....+|+. .+.|.+||.|++......+.|++..+.+|+|+|+|+|+|++++|+|+++..|
T Consensus 332 ~ep~lv~gd~~~~kyg~~---------~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNL---------REACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ- 401 (649)
T ss_pred cCccccccCcccccccch---------hhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc-
Confidence 999888777655454443 3459999999998888899999999999999999999999999999866432
Q ss_pred CCCCCCcccchhhhHHhhhccccccccccccccCCCcccCCchhhhcCCCCCCccEEEEEEEEecCCCCCcceeEEeC-C
Q 037925 400 NNGDHPFAQQKNVNELLLASSAFSWYEEKVGISGNRSFVRPDLAEQINTTKDTSDYLWYTASIHVMPGQGKEVFLNIE-S 478 (821)
Q Consensus 400 ~~~~~~p~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~p~~~Eql~~t~d~~Gyl~Y~t~v~~~~~~~~~~~L~v~-~ 478 (821)
|....|++ ++|..++ .+||++|+|.++.+.++ ...|+|. +
T Consensus 402 ----------------------~~~~~e~~------------~~~~~~~---~~~~ll~~~~~t~d~sd--~t~~~i~ls 442 (649)
T KOG0496|consen 402 ----------------------WISFTEPI------------PSEAVGQ---SFGGLLEQTNLTKDKSD--TTSLKIPLS 442 (649)
T ss_pred ----------------------cccccCCC------------ccccccC---cceEEEEEEeeccccCC--CceEeeccc
Confidence 44444543 3666655 88899999999865543 3467888 9
Q ss_pred cceEEEEEECCEEEEEEEcccCcceeEEeeeecccCCccEEEEEEeccCccccccccccccccee-EEEECceeCccccC
Q 037925 479 LGHAALVFVNKKLVAFGYGNHDFANFLINKKIELNEGINTLDILSMMVGLQNYGAWFDVAGAGLF-SVILIDLKNGKRDL 557 (821)
Q Consensus 479 ~~D~a~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~Gr~NyG~~l~~~~kGI~-~V~l~g~~~g~~~L 557 (821)
++|++||||||+++|+++++.....+.+..++.|..|.|+|+|||||+||+||| +++++.|||+ +|.|+|. +++
T Consensus 443 ~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l 517 (649)
T KOG0496|consen 443 LGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDL 517 (649)
T ss_pred ccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----ecc
Confidence 999999999999999999987677788888999999999999999999999999 8899999999 9999987 577
Q ss_pred CcCCceEeccCCcccccccccccCCCCCcccCCCCCCCccceEEEEEEeCCCCCCceEEeeCCCceEEEEECCeeeeeec
Q 037925 558 SSGEWIYQVGVEGEYIGLDKISLANSSFWKQGSTLPVNKSLIWYKTTFLAPEGKGPLALNLASMGKGQAWVNGQSIGRYW 637 (821)
Q Consensus 558 ~~~~W~~~~~l~ge~~~~~~~~~~~~~~W~~~~~~~~~~~~~~Yr~~F~~p~~~dp~~Ld~~g~gKG~vwVNG~nlGRYW 637 (821)
+++.|.|+++|.+|.+.++.+++..+++|......+..+|.+||+ +|++|++.+||||||.|||||+|||||+||||||
T Consensus 518 ~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW 596 (649)
T KOG0496|consen 518 TWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYW 596 (649)
T ss_pred ceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCccccccc
Confidence 777888999999999999998888889998776544447889999 9999999999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCCCcCccccccCCCCCceEEeecCCcccccCCceeEEEEecCCCCCcceecccccccccccccc
Q 037925 638 SAYLAPSTGCTKKCDYRGSYDASKCQKHCGQPAQTLYHIPRTWVHPGENLLVIHEELGGDPSKISLLTKTGQHICSFVSE 717 (821)
Q Consensus 638 ~~~~~~~~G~~~~~~~~g~~~~~~~~~~~g~PQqtlYhVP~~~Lk~g~N~lvvfE~~g~~~~~I~l~~~~~~~~c~~~~e 717 (821)
+++ | ||+++ |||++|||++.|+||||||++++|..|+|+++++..+|+.++|
T Consensus 597 ~~~-----G----------------------~Q~~y-hvPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~ 648 (649)
T KOG0496|consen 597 PSF-----G----------------------PQRTY-HVPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVLSTCAYVRE 648 (649)
T ss_pred CCC-----C----------------------CceEE-ECcHHHhCcCCceEEEEEeccCCCccceEEEeEeeeEeeeccc
Confidence 975 6 86555 5999999999999999999999999999999998899999987
Q ss_pred C
Q 037925 718 A 718 (821)
Q Consensus 718 ~ 718 (821)
+
T Consensus 649 ~ 649 (649)
T KOG0496|consen 649 H 649 (649)
T ss_pred C
Confidence 3
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.7e-91 Score=764.44 Aligned_cols=297 Identities=43% Similarity=0.770 Sum_probs=231.7
Q ss_pred eEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEE
Q 037925 11 ALVIDGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLH 90 (821)
Q Consensus 11 ~~~~dG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vi 90 (821)
+|+|||||++|+||||||+|+|+++|+|+|+||||+|+|||+||||||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccccccccC
Q 037925 91 LRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWAYG 170 (821)
Q Consensus 91 lrpGPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 170 (821)
|||||||||||++||+|.||++++++++||+||.|+++|++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999998999999999999999999999999999 8999999999999999999963
Q ss_pred CCcHHHHHHHHHHhHhcCCc-cceeeccCC--------CCCCcccccCCCcccCC-----C---CCCCCCCCeEeeeccc
Q 037925 171 VGGELYVKWAADTAVNLNTS-VPWVMCQQE--------DAPDPIINTCNGFYCDG-----F---TPNSPSKPIMWTENYS 233 (821)
Q Consensus 171 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~--------~~~~~v~~~~ng~~~~~-----~---~~~~~~~P~~~~E~~~ 233 (821)
.++++||+.|++++++.+++ +++++++.. +.++..+.+++++.|.. | ...+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37999999999999999998 667777542 12332344444555522 1 2456889999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHhcCCeeeeeeeeecCCCCCCCCCCCCc----cccCCCCCCCCCCCCCCChhHHH
Q 037925 234 GWFLSFGYAVPFRPVEDLAFAVARFFETGGTFQNYYMYFGGTNFGRTAGGPLV----ATSYDYDAPIDEYGFIRQPKWGH 309 (821)
Q Consensus 234 Gwf~~wg~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~----~TSYDYdAPL~E~G~~~tpKy~~ 309 (821)
|||++||++++.+++++++..++++++.|.+ +||||||||||||+++|++.. +|||||+|||+|+|++ +|||++
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999966 799999999999999887654 5999999999999999 599999
Q ss_pred HHHHHHH
Q 037925 310 LRELHKA 316 (821)
Q Consensus 310 lr~l~~~ 316 (821)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999864
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=377.75 Aligned_cols=289 Identities=22% Similarity=0.333 Sum_probs=218.1
Q ss_pred EEEecceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEE-ceecCccCCcCceeeecCcchHHHHHHHHH
Q 037925 5 VTYDHRALVIDGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIET-YVFWNYHEPIRGQYYFEGRFDLVRFVKTVQ 83 (821)
Q Consensus 5 v~~~~~~~~~dG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~ 83 (821)
|++++..+++||+|++++||.+||+|+|++.|.|||+|||++|+|+|++ |+.||.|||++|+|||+ .+|.. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4678899999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCceEEEecCc-ccccccCCCCCCcccccCCCeeee---------cCChhHHHHHHHHHHHHHHHHHhccccccCCCce
Q 037925 84 EAGLFLHLRIGP-YACAEWNYGGFPVWLHFIPGIQFR---------TTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPI 153 (821)
Q Consensus 84 ~~gL~VilrpGP-YicaEw~~GG~P~WL~~~p~~~~R---------~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 153 (821)
+.||+||||||| ..|.+|..+++|+||..++.-.+| .++|.|++++++ |+++|+ +..+++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~ir--er~~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR----ILQQIR--ERLYGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHH----HHHHHH--HHHhccCCce
Confidence 999999999999 999999999999999886653332 456778888877 445555 3335789999
Q ss_pred EEecccccccccccccCCCcHHHHHHHHHHhHhc-CCccceeeccCC-CCCC-cccccCC-----Cccc--CCCCCCCCC
Q 037925 154 ILAQVENEYGNVEWAYGVGGELYVKWAADTAVNL-NTSVPWVMCQQE-DAPD-PIINTCN-----GFYC--DGFTPNSPS 223 (821)
Q Consensus 154 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~~~-~~~~-~v~~~~n-----g~~~--~~~~~~~~~ 223 (821)
|+||++||||++.+.+..|.+.+..||++.+-.. .++-+|=+.--+ +..+ ..|.+.+ .... -++......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999965556668889999999987321 122232111100 0000 0111111 0000 012222222
Q ss_pred C----CeEeeecccccc-cccCCCCCCCC-HHHHHHHHHHHHhcCCeeeeeeeeecCCCCC------CCCCCC---C---
Q 037925 224 K----PIMWTENYSGWF-LSFGYAVPFRP-VEDLAFAVARFFETGGTFQNYYMYFGGTNFG------RTAGGP---L--- 285 (821)
Q Consensus 224 ~----P~~~~E~~~Gwf-~~wg~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~Ga~---~--- 285 (821)
+ +....|.+-+|| +.|..+.-... .+.-++.+++.|..+.+ -||||||+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 556677788888 77776655444 44446667777887776 6999999999999 777664 2
Q ss_pred ----ccccCCCCCCCCCCCCC
Q 037925 286 ----VATSYDYDAPIDEYGFI 302 (821)
Q Consensus 286 ----~~TSYDYdAPL~E~G~~ 302 (821)
..++|++++.+.+.|..
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 47999999999999985
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.84 E-value=1.8e-20 Score=210.26 Aligned_cols=263 Identities=21% Similarity=0.270 Sum_probs=161.9
Q ss_pred eeCCCCCcccHHHHHHHHHHcCCCEEEE-ceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCC
Q 037925 26 IHYPRSTPEVWPELIRKSKEGGLEVIET-YVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYG 104 (821)
Q Consensus 26 ~Hy~R~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~G 104 (821)
++|.+++++.|+++|++||++|+|+|++ .+.|...||+||+|||+ .|+++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 5677899999999999999999999996 67899999999999999 799999999999999999964 67
Q ss_pred CCCccccc-CCCeee----------------ecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccccccc
Q 037925 105 GFPVWLHF-IPGIQF----------------RTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEW 167 (821)
Q Consensus 105 G~P~WL~~-~p~~~~----------------R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~ 167 (821)
..|.||.+ +|++.. ..++|.|++++++++++|+++++++| .||++||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p-------~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHP-------AVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTT-------TEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccc-------eEEEEEeccccCcCcC
Confidence 79999975 676532 14578999999999999999998554 7999999999987432
Q ss_pred ccCCCcHHHHHHHHHHhHhc-------CC-------------ccceeeccCC------C---------------------
Q 037925 168 AYGVGGELYVKWAADTAVNL-------NT-------------SVPWVMCQQE------D--------------------- 200 (821)
Q Consensus 168 ~~~~~~~~y~~~l~~~~~~~-------g~-------------~vp~~~~~~~------~--------------------- 200 (821)
....+.++|.+||++++... |. ..|..+.... |
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22346678999999998631 11 1122211000 0
Q ss_pred --CCCcccccCC--Cc--cc-C--------CC---------------------------C-CCCCCCCeEeeeccccccc
Q 037925 201 --APDPIINTCN--GF--YC-D--------GF---------------------------T-PNSPSKPIMWTENYSGWFL 237 (821)
Q Consensus 201 --~~~~v~~~~n--g~--~~-~--------~~---------------------------~-~~~~~~P~~~~E~~~Gwf~ 237 (821)
.|+ ...+.| +. .. + ++ . ....++|.+++|..+| -.
T Consensus 224 ~~~p~-~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPD-HPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCC-ceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 011 000111 00 00 0 00 0 1146899999999999 55
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhcCCeeeeeeeeecCCCCCCCCCCCCccccCCCCCCCCCCC-CCCChhHHHHHHHHHH
Q 037925 238 SFGYAVPFRPVEDLAFAVARFFETGGTFQNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYG-FIRQPKWGHLRELHKA 316 (821)
Q Consensus 238 ~wg~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdAPL~E~G-~~~tpKy~~lr~l~~~ 316 (821)
.|+.......+..+....-.-++.|+..+.|+=+ ..--+|.=.. ..|.|+-+| .+ +++|.+++++.+.
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~-~~~~~e~~~~~~~ 370 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREP-TRRYREVAQLGRE 370 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B--HHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCC-CcHHHHHHHHHHH
Confidence 6766555555566665555668999998777755 3334442211 136788889 65 7999999999887
Q ss_pred Hhh
Q 037925 317 IKL 319 (821)
Q Consensus 317 i~~ 319 (821)
|+.
T Consensus 371 l~~ 373 (374)
T PF02449_consen 371 LKK 373 (374)
T ss_dssp HHT
T ss_pred Hhc
Confidence 753
No 6
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.76 E-value=2.3e-19 Score=157.93 Aligned_cols=75 Identities=36% Similarity=0.690 Sum_probs=59.8
Q ss_pred EecCCCCeEEEEeeecCCCCC-CccCCc---CCcccccC-cHHHHHhhcCCCCCcEEEecCCCCCCCCCCCCCcceEEEE
Q 037925 741 LACERGWHIAAINFASYGIPE-GNCGSF---RPGACHMD-VLPIVQKACVGQIECSIPVSSAYLGVSAGACPGLLKALAV 815 (821)
Q Consensus 741 L~C~~g~~i~~I~~A~yGr~~-~~C~~~---~~~~C~~~-s~~~v~~~C~Gk~~C~v~a~~~~Fg~~~DPC~gt~KyL~v 815 (821)
|+||+|+.| .|.+|+|||+. .+|+.. ...+|+++ ++.+|+++|+||++|+|.+++.+|| ||||||+|||+|
T Consensus 1 L~C~~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~---dpC~~~~KyL~V 76 (80)
T PF02140_consen 1 LSCPPGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFG---DPCPGTSKYLEV 76 (80)
T ss_dssp EE-STTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH-----SSTTS--EEEE
T ss_pred CCCcCCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccC---CCCCCCCeEEEE
Confidence 899999766 79999999966 589743 35679999 9999999999999999999999998 999999999999
Q ss_pred EEEe
Q 037925 816 EAHC 819 (821)
Q Consensus 816 ~y~C 819 (821)
+|+|
T Consensus 77 ~Y~C 80 (80)
T PF02140_consen 77 TYTC 80 (80)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9999
No 7
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.71 E-value=1e-17 Score=172.67 Aligned_cols=85 Identities=27% Similarity=0.545 Sum_probs=77.2
Q ss_pred cCCCCceEEecCCCCeEEEEeeecCCCC-CCccCC----cCCcccccC-cHHHHHhhcCCCCCcEEEecCCCCCCCCCCC
Q 037925 733 VSSSPQVRLACERGWHIAAINFASYGIP-EGNCGS----FRPGACHMD-VLPIVQKACVGQIECSIPVSSAYLGVSAGAC 806 (821)
Q Consensus 733 ~~~~~~~~L~C~~g~~i~~I~~A~yGr~-~~~C~~----~~~~~C~~~-s~~~v~~~C~Gk~~C~v~a~~~~Fg~~~DPC 806 (821)
.+||..++|+||.|.+|+ |+.|+|||. ...|.. ..+.+|..+ |++|+.++|++++.|.|.|...+||. |||
T Consensus 40 aCdG~~i~L~CP~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~--DPC 116 (265)
T KOG4729|consen 40 ACDGERITLSCPRGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGD--DPC 116 (265)
T ss_pred eecCceEEEEcCCCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCC--CCC
Confidence 389999999999999985 999999994 468953 235799999 99999999999999999999999997 999
Q ss_pred CCcceEEEEEEEee
Q 037925 807 PGLLKALAVEAHCS 820 (821)
Q Consensus 807 ~gt~KyL~v~y~C~ 820 (821)
|||+|||+|+|.|.
T Consensus 117 PgT~KYLev~Y~Cv 130 (265)
T KOG4729|consen 117 PGTSKYLEVQYGCV 130 (265)
T ss_pred CCchhheEEEeccC
Confidence 99999999999995
No 8
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.16 E-value=1.2e-09 Score=119.28 Aligned_cols=150 Identities=21% Similarity=0.298 Sum_probs=108.4
Q ss_pred EEEecceEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHH
Q 037925 5 VTYDHRALVIDGKRRVLQSGSIHYPR------STPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRF 78 (821)
Q Consensus 5 v~~~~~~~~~dG~p~~~~sG~~Hy~R------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~f 78 (821)
|.+.++.|+|||||+++-+...|... ++++.|+.+|++||+||+|+|++ .|-|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHH
Confidence 67889999999999999999999643 47899999999999999999999 444421 789
Q ss_pred HHHHHHcCceEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 037925 79 VKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQV 158 (821)
Q Consensus 79 l~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 158 (821)
+++|.+.||.|+--+. ..+.=.|-... .......||.+.+.+.+-+++++.+.++|| .||||=+
T Consensus 65 ~~~cD~~GilV~~e~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIP--------LEGHGSWQDFG-NCNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S---------BSCTSSSSTS-CTSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEEE
T ss_pred HHHHhhcCCEEEEecc--------ccccCccccCC-ccccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheeec
Confidence 9999999999987642 11121222111 012456789999999999999999999776 8999999
Q ss_pred cccccccccccCCCcHHHHHHHHHHhHhcCCccceee
Q 037925 159 ENEYGNVEWAYGVGGELYVKWAADTAVNLNTSVPWVM 195 (821)
Q Consensus 159 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 195 (821)
-||-. ...+++.|.+++++..-+=|+..
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~ 156 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTY 156 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEE
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceee
Confidence 99982 24678889999998776656543
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.01 E-value=4.7e-08 Score=116.85 Aligned_cols=157 Identities=14% Similarity=0.096 Sum_probs=113.3
Q ss_pred eEEEecceEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHH
Q 037925 4 NVTYDHRALVIDGKRRVLQSGSIHYPR------STPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVR 77 (821)
Q Consensus 4 ~v~~~~~~~~~dG~p~~~~sG~~Hy~R------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~ 77 (821)
+|++++..|+|||+|+++-+...|... ++++.|+.+|+.||++|+|+|++ .|-|. + .+
T Consensus 277 ~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~------~-----~~ 340 (604)
T PRK10150 277 SVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY------S-----EE 340 (604)
T ss_pred EEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC------C-----HH
Confidence 478889999999999999999888532 47788999999999999999999 24442 1 58
Q ss_pred HHHHHHHcCceEEEecCcccccccCCCCCCcccc-------c-CCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccC
Q 037925 78 FVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLH-------F-IPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQ 149 (821)
Q Consensus 78 fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~-------~-~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~ 149 (821)
|+++|-+.||+|+--.. .-|+..|+. + .+....-..+|.+.++..+-+++|+.+.++||
T Consensus 341 ~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHP----- 407 (604)
T PRK10150 341 MLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDKNHP----- 407 (604)
T ss_pred HHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhccCCc-----
Confidence 99999999999997642 112222221 1 11111123457788877777888888777665
Q ss_pred CCceEEecccccccccccccCCCcHHHHHHHHHHhHhcCCccceee
Q 037925 150 GGPIILAQVENEYGNVEWAYGVGGELYVKWAADTAVNLNTSVPWVM 195 (821)
Q Consensus 150 gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 195 (821)
.||||=|-||.... ......|++.|.+.+++..-+-|+..
T Consensus 408 --SIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~ 447 (604)
T PRK10150 408 --SVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTC 447 (604)
T ss_pred --eEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEE
Confidence 89999999997542 11345778888888888776655443
No 10
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.93 E-value=1.9e-09 Score=100.98 Aligned_cols=69 Identities=32% Similarity=0.712 Sum_probs=50.0
Q ss_pred CccceEEEEEEeCCCCCCceE-Eee--CCCceEEEEECCeeeeeecccccCCCCCCCccccCCCCcCccccccCCCCCce
Q 037925 595 NKSLIWYKTTFLAPEGKGPLA-LNL--ASMGKGQAWVNGQSIGRYWSAYLAPSTGCTKKCDYRGSYDASKCQKHCGQPAQ 671 (821)
Q Consensus 595 ~~~~~~Yr~~F~~p~~~dp~~-Ld~--~g~gKG~vwVNG~nlGRYW~~~~~~~~G~~~~~~~~g~~~~~~~~~~~g~PQq 671 (821)
..+..|||++|........+. |+. ....+++|||||++|||||+.+ | ||+
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-----g----------------------~q~ 85 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-----G----------------------PQT 85 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTT-----E----------------------CCE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCC-----C----------------------ccE
Confidence 457899999996422111233 333 3578999999999999999643 5 999
Q ss_pred EEeecCCcccccCCceeEEE
Q 037925 672 TLYHIPRTWVHPGENLLVIH 691 (821)
Q Consensus 672 tlYhVP~~~Lk~g~N~lvvf 691 (821)
+++ ||+++|+.++|.|+|+
T Consensus 86 tf~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 86 TFS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp EEE-E-BTTBTTCEEEEEEE
T ss_pred EEE-eCceeecCCCEEEEEE
Confidence 998 9999999875665554
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.85 E-value=3.7e-08 Score=105.13 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=108.9
Q ss_pred CCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccC-CcCce-eeecCcchHHHHHHHHHHcCceEEEe
Q 037925 15 DGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHE-PIRGQ-YYFEGRFDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 15 dG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-p~~G~-~df~g~~dl~~fl~~a~~~gL~Vilr 92 (821)
+|+++.+.+-+.|+.. +..-++.+++||++|+|+|++.|.|...+ |.|+. ++=+.-..|+++|+.|+++||+|||-
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6999999999999422 12778999999999999999999995554 67764 66666679999999999999999997
Q ss_pred cCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccccccc--cC
Q 037925 93 IGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWA--YG 170 (821)
Q Consensus 93 pGPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~--~~ 170 (821)
+=. .|.|...... -...+...+...++++.|+.+++. ..+|++++|=||....... ..
T Consensus 82 ~h~----------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LHN----------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EEE----------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTTS
T ss_pred ecc----------Cccccccccc---cccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCccccc
Confidence 521 2777432211 112233344445556666666653 3479999999999874211 00
Q ss_pred ----CCcHHHHHHHHHHhHhcCCccceeec
Q 037925 171 ----VGGELYVKWAADTAVNLNTSVPWVMC 196 (821)
Q Consensus 171 ----~~~~~y~~~l~~~~~~~g~~vp~~~~ 196 (821)
..-.++++.+.+.+|+.+.+.+++..
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 01145666677777787777665543
No 12
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.70 E-value=3.3e-07 Score=115.17 Aligned_cols=186 Identities=17% Similarity=0.145 Sum_probs=120.2
Q ss_pred eEEEecceEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHH
Q 037925 4 NVTYDHRALVIDGKRRVLQSGSIHYPR------STPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVR 77 (821)
Q Consensus 4 ~v~~~~~~~~~dG~p~~~~sG~~Hy~R------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~ 77 (821)
+|.++++.|+|||+|+++-+...|... ++++.|+.+|+.||++|+|+|++- |-|. =.+
T Consensus 319 ~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~s-----HyP~-----------~~~ 382 (1021)
T PRK10340 319 DIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTA-----HYPN-----------DPR 382 (1021)
T ss_pred EEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEec-----CCCC-----------CHH
Confidence 477888999999999999999988432 478999999999999999999982 4332 158
Q ss_pred HHHHHHHcCceEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 037925 78 FVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQ 157 (821)
Q Consensus 78 fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 157 (821)
|+++|-+.||+|+--. |..|.-|.. . .+...-+++|.|.++..+=+++|+.+.++|| .||||=
T Consensus 383 fydlcDe~GllV~dE~-~~e~~g~~~-------~--~~~~~~~~~p~~~~~~~~~~~~mV~RdrNHP-------SIi~Ws 445 (1021)
T PRK10340 383 FYELCDIYGLFVMAET-DVESHGFAN-------V--GDISRITDDPQWEKVYVDRIVRHIHAQKNHP-------SIIIWS 445 (1021)
T ss_pred HHHHHHHCCCEEEECC-cccccCccc-------c--cccccccCCHHHHHHHHHHHHHHHHhCCCCC-------EEEEEE
Confidence 9999999999999875 332222211 0 0111124678787665555667777777665 899999
Q ss_pred ccccccccccccCCCcHHHHHHHHHHhHhcCCccceeeccCCCC--CCcccccCCCcc--cCCCCCCCCCCCeEeeecc
Q 037925 158 VENEYGNVEWAYGVGGELYVKWAADTAVNLNTSVPWVMCQQEDA--PDPIINTCNGFY--CDGFTPNSPSKPIMWTENY 232 (821)
Q Consensus 158 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~--~~~v~~~~ng~~--~~~~~~~~~~~P~~~~E~~ 232 (821)
+-||-+. + . .++.+.+.++++.-+-|+ +..+... ..+++...-+.. ...+....+++|++.+||-
T Consensus 446 lGNE~~~-----g---~-~~~~~~~~~k~~DptR~v-~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 446 LGNESGY-----G---C-NIRAMYHAAKALDDTRLV-HYEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred CccCccc-----c---H-HHHHHHHHHHHhCCCceE-EeCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 9999753 2 1 245677777776655443 3332111 112221110100 0122233457999999984
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.63 E-value=1.9e-07 Score=87.61 Aligned_cols=84 Identities=20% Similarity=0.178 Sum_probs=58.8
Q ss_pred hhhcCCCCCCccEEEEEEEEecCCCCCccee-EEeC-CcceEEEEEECCEEEEEEEcccCcceeEEeeeec-ccCCccEE
Q 037925 443 AEQINTTKDTSDYLWYTASIHVMPGQGKEVF-LNIE-SLGHAALVFVNKKLVAFGYGNHDFANFLINKKIE-LNEGINTL 519 (821)
Q Consensus 443 ~Eql~~t~d~~Gyl~Y~t~v~~~~~~~~~~~-L~v~-~~~D~a~VfVng~~~G~~~~~~~~~~~~~~~~i~-l~~g~~~L 519 (821)
.+..+..++..|++|||++|...+.+ .... |.+. +.+++++|||||+++|+..... ..+.+|+.|.. |+.+.++|
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~-~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-g~q~tf~~p~~il~~~n~v~ 101 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQD-TSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-GPQTTFSVPAGILKYGNNVL 101 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEE-EEEE-EEECSSTTEEEEEEETTEEEEEEETTT-ECCEEEEE-BTTBTTCEEEE
T ss_pred eeccCccccCCCCEEEEEEEeCCCcc-eeEEEEeccCCCceEEEEEECCEEeeeecCCC-CccEEEEeCceeecCCCEEE
Confidence 45556667799999999999754322 3344 5554 6899999999999999987322 22344554542 56667889
Q ss_pred EEEEeccCc
Q 037925 520 DILSMMVGL 528 (821)
Q Consensus 520 ~ILven~Gr 528 (821)
.+|+.+||+
T Consensus 102 ~vl~~~~g~ 110 (111)
T PF13364_consen 102 VVLWDNMGH 110 (111)
T ss_dssp EEEEE-STT
T ss_pred EEEEeCCCC
Confidence 999999995
No 14
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.62 E-value=7.8e-07 Score=111.70 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=105.0
Q ss_pred eEEEecceEEECCEEeEEEEEEeeCC------CCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHH
Q 037925 4 NVTYDHRALVIDGKRRVLQSGSIHYP------RSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVR 77 (821)
Q Consensus 4 ~v~~~~~~~~~dG~p~~~~sG~~Hy~------R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~ 77 (821)
+|+++++.|+|||+|+++-+...|.. +++++.|+++|+.||++|+|+|++ .|-|.. .+
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~~-----------p~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPNH-----------PL 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------HH
Confidence 47788899999999999999999842 368899999999999999999999 244421 68
Q ss_pred HHHHHHHcCceEEEecCcccccccCCCCC-CcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 037925 78 FVKTVQEAGLFLHLRIGPYACAEWNYGGF-PVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILA 156 (821)
Q Consensus 78 fl~~a~~~gL~VilrpGPYicaEw~~GG~-P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 156 (821)
|+++|-+.||+|+--.. . | .-|+ |. . . =.+||.|++++.+=+++++.+.++|| .||||
T Consensus 399 fydlcDe~GilV~dE~~-~---e--~hg~~~~---~----~-~~~dp~~~~~~~~~~~~mV~RdrNHP-------SIi~W 457 (1027)
T PRK09525 399 WYELCDRYGLYVVDEAN-I---E--THGMVPM---N----R-LSDDPRWLPAMSERVTRMVQRDRNHP-------SIIIW 457 (1027)
T ss_pred HHHHHHHcCCEEEEecC-c---c--ccCCccc---c----C-CCCCHHHHHHHHHHHHHHHHhCCCCC-------EEEEE
Confidence 99999999999997742 1 1 1111 11 0 0 14578888777766777777777665 89999
Q ss_pred cccccccccccccCCCcHHHHHHHHHHhHhcCCcccee
Q 037925 157 QVENEYGNVEWAYGVGGELYVKWAADTAVNLNTSVPWV 194 (821)
Q Consensus 157 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~ 194 (821)
=+-||-+. + ...+.+.+.+++..-+=|..
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~ 486 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQ 486 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEE
Confidence 99999753 2 12445566666655444543
No 15
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=2.9e-06 Score=103.29 Aligned_cols=134 Identities=19% Similarity=0.296 Sum_probs=105.7
Q ss_pred eEEEecceEEECCEEeEEEEEEeeCCC-----C-CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHH
Q 037925 4 NVTYDHRALVIDGKRRVLQSGSIHYPR-----S-TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVR 77 (821)
Q Consensus 4 ~v~~~~~~~~~dG~p~~~~sG~~Hy~R-----~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~ 77 (821)
+|.++...|+|||||+++-+..-|.+- . ..+.-+++|++||++|+|+|+|- |-|.. ..
T Consensus 285 ~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-----------~~ 348 (808)
T COG3250 285 TVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-----------EE 348 (808)
T ss_pred EEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-----------HH
Confidence 578899999999999999999999754 2 34448999999999999999996 55543 78
Q ss_pred HHHHHHHcCceEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 037925 78 FVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQ 157 (821)
Q Consensus 78 fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 157 (821)
|+++|.++||+||--+ ..||-. +| +||.|++.+..=+++|+.+.++|| .||||=
T Consensus 349 ~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knHP-------SIiiWs 402 (808)
T COG3250 349 FYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNHP-------SIIIWS 402 (808)
T ss_pred HHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCCC-------cEEEEe
Confidence 9999999999999885 223322 22 788999999888889988888776 799999
Q ss_pred ccccccccccccCCCcHHHHHHHHHHh
Q 037925 158 VENEYGNVEWAYGVGGELYVKWAADTA 184 (821)
Q Consensus 158 iENEyg~~~~~~~~~~~~y~~~l~~~~ 184 (821)
+-||-|. |.....-..|.++.-
T Consensus 403 ~gNE~~~-----g~~~~~~~~~~k~~d 424 (808)
T COG3250 403 LGNESGH-----GSNHWALYRWFKASD 424 (808)
T ss_pred ccccccC-----ccccHHHHHHHhhcC
Confidence 9999875 334444455555543
No 16
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.12 E-value=2.1e-05 Score=78.18 Aligned_cols=98 Identities=32% Similarity=0.323 Sum_probs=70.5
Q ss_pred CCCCccEEEEEEEEecCCCC-CcceeEEeCCcceEEEEEECCEEEEEEEcccCcceeEEeeeecccCCc-cEEEEEEecc
Q 037925 449 TKDTSDYLWYTASIHVMPGQ-GKEVFLNIESLGHAALVFVNKKLVAFGYGNHDFANFLINKKIELNEGI-NTLDILSMMV 526 (821)
Q Consensus 449 t~d~~Gyl~Y~t~v~~~~~~-~~~~~L~v~~~~D~a~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~-~~L~ILven~ 526 (821)
.....|+.|||++|.++... +....|.+.++.+.+.|||||+++|...+.. ..+.++++-.|+.|. |+|.|.|.+.
T Consensus 63 ~~~~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v~~~ 140 (167)
T PF02837_consen 63 LWDYSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRVDNW 140 (167)
T ss_dssp TSTCCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEEESS
T ss_pred ccccCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEEeec
Confidence 34578999999999886532 4678899999999999999999999987643 356666666688887 9999999865
Q ss_pred Ccccccccc-ccccccee-EEEEC
Q 037925 527 GLQNYGAWF-DVAGAGLF-SVILI 548 (821)
Q Consensus 527 Gr~NyG~~l-~~~~kGI~-~V~l~ 548 (821)
....+-+.+ .....||. +|.|.
T Consensus 141 ~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 141 PDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp SGGGCGBSSSEEE--EEESEEEEE
T ss_pred CCCceeecCcCCccCccccEEEEE
Confidence 543321111 12468998 88874
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.02 E-value=1.4e-05 Score=85.43 Aligned_cols=117 Identities=22% Similarity=0.353 Sum_probs=87.8
Q ss_pred cCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHH
Q 037925 57 WNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKI 136 (821)
Q Consensus 57 Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l 136 (821)
|...||++|+|||+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+ .+..++++.+|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 433333 533 6899997533 345678888899988
Q ss_pred HHHHHhccccccCCCceEEecccccccccc-------cccCCCcHHHHHHHHHHhHhcCCccceeeccC
Q 037925 137 IDLMKQENLFASQGGPIILAQVENEYGNVE-------WAYGVGGELYVKWAADTAVNLNTSVPWVMCQQ 198 (821)
Q Consensus 137 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 198 (821)
+.+++ |.|..|+|=||--... ..+...+.+|+...-+.+|+...++.++.++.
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 88777 5689999999954321 00112345788888888998888888887653
No 18
>PLN02705 beta-amylase
Probab=97.91 E-value=3.1e-05 Score=89.36 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=64.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCC-cCceeeecCcchHHHHHHHHHHcCce--EEEecCcccccccCCC----
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEP-IRGQYYFEGRFDLVRFVKTVQEAGLF--LHLRIGPYACAEWNYG---- 104 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~gL~--VilrpGPYicaEw~~G---- 104 (821)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ .-|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 4566788999999999999999999999998 699999996 67779999999999 55654 33444 222
Q ss_pred -CCCccccc----CCCeee
Q 037925 105 -GFPVWLHF----IPGIQF 118 (821)
Q Consensus 105 -G~P~WL~~----~p~~~~ 118 (821)
-||.|+.. +|+|.+
T Consensus 340 IPLP~WV~e~g~~nPDiff 358 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFF 358 (681)
T ss_pred ccCCHHHHHhcccCCCcee
Confidence 28999975 567643
No 19
>PLN02905 beta-amylase
Probab=97.86 E-value=4.4e-05 Score=88.33 Aligned_cols=80 Identities=24% Similarity=0.459 Sum_probs=63.2
Q ss_pred cccHHHHHHHHHHcCCCEEEEceecCccCC-cCceeeecCcchHHHHHHHHHHcCce--EEEecCcccccccCCC-----
Q 037925 33 PEVWPELIRKSKEGGLEVIETYVFWNYHEP-IRGQYYFEGRFDLVRFVKTVQEAGLF--LHLRIGPYACAEWNYG----- 104 (821)
Q Consensus 33 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~gL~--VilrpGPYicaEw~~G----- 104 (821)
++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ .-|+- +-|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~I 358 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCI 358 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 344677899999999999999999999998 799999996 67789999999999 45554 33433 222
Q ss_pred CCCccccc----CCCeee
Q 037925 105 GFPVWLHF----IPGIQF 118 (821)
Q Consensus 105 G~P~WL~~----~p~~~~ 118 (821)
-||.|+.. +|+|.+
T Consensus 359 PLP~WV~e~g~~nPDiff 376 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFF 376 (702)
T ss_pred cCCHHHHHhhhcCCCceE
Confidence 38999975 577643
No 20
>PLN02801 beta-amylase
Probab=97.82 E-value=5.7e-05 Score=86.13 Aligned_cols=80 Identities=25% Similarity=0.428 Sum_probs=63.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCC-cCceeeecCcchHHHHHHHHHHcCceE--EEecCcccccccCCC----
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEP-IRGQYYFEGRFDLVRFVKTVQEAGLFL--HLRIGPYACAEWNYG---- 104 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~gL~V--ilrpGPYicaEw~~G---- 104 (821)
.++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566788999999999999999999999998 599999996 677899999999994 5554 33433 112
Q ss_pred -CCCccccc----CCCee
Q 037925 105 -GFPVWLHF----IPGIQ 117 (821)
Q Consensus 105 -G~P~WL~~----~p~~~ 117 (821)
-||.|+.+ +|++.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999974 57764
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.79 E-value=7.3e-05 Score=85.84 Aligned_cols=81 Identities=22% Similarity=0.444 Sum_probs=64.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCC-cCceeeecCcchHHHHHHHHHHcCce--EEEecCcccccccCCC----
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEP-IRGQYYFEGRFDLVRFVKTVQEAGLF--LHLRIGPYACAEWNYG---- 104 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~gL~--VilrpGPYicaEw~~G---- 104 (821)
.++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..+++++++++||+ |||.+ .-|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556788999999999999999999999998 799999996 67779999999999 45554 33433 222
Q ss_pred -CCCccccc----CCCeee
Q 037925 105 -GFPVWLHF----IPGIQF 118 (821)
Q Consensus 105 -G~P~WL~~----~p~~~~ 118 (821)
-||.|+.. +|+|.+
T Consensus 199 IpLP~WV~~~g~~dpDiff 217 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAY 217 (573)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999975 577643
No 22
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.75 E-value=0.0003 Score=76.53 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=86.2
Q ss_pred eEEEecceEE--ECCEEeEEEEEEeeCCCC-----------CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeec
Q 037925 4 NVTYDHRALV--IDGKRRVLQSGSIHYPRS-----------TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFE 70 (821)
Q Consensus 4 ~v~~~~~~~~--~dG~p~~~~sG~~Hy~R~-----------~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~ 70 (821)
.|++.++.|. .+|++|+|.+-.+.+.-. .++.|+.++..||++|+|||++|-. +
T Consensus 10 pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v-------------d 76 (314)
T PF03198_consen 10 PIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV-------------D 76 (314)
T ss_dssp -EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES----------------
T ss_pred CEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe-------------C
Confidence 4788899999 789999999877765332 4688999999999999999999842 2
Q ss_pred CcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccccCCCeeeecCCh--hHHHHHHHHHHHHHHHHHhcccccc
Q 037925 71 GRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNN--PFKEEMKRFLAKIIDLMKQENLFAS 148 (821)
Q Consensus 71 g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~dp--~y~~~~~~~~~~l~~~l~~~~~~~~ 148 (821)
-..|=+.++++.+++|+||||--+ .|...+-..+| .|-...-.-+.+++..+++++
T Consensus 77 p~~nHd~CM~~~~~aGIYvi~Dl~------------------~p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~---- 134 (314)
T PF03198_consen 77 PSKNHDECMSAFADAGIYVILDLN------------------TPNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD---- 134 (314)
T ss_dssp TTS--HHHHHHHHHTT-EEEEES-------------------BTTBS--TTS------HHHHHHHHHHHHHHTT-T----
T ss_pred CCCCHHHHHHHHHhCCCEEEEecC------------------CCCccccCCCCcCCCCHHHHHHHHHHHHHhccCC----
Confidence 224779999999999999999964 23334445556 553333333345667778554
Q ss_pred CCCceEEecccccccccccc--cCCCcHHHHHHHHHHhHhcCC-ccce
Q 037925 149 QGGPIILAQVENEYGNVEWA--YGVGGELYVKWAADTAVNLNT-SVPW 193 (821)
Q Consensus 149 ~gGpII~~QiENEyg~~~~~--~~~~~~~y~~~l~~~~~~~g~-~vp~ 193 (821)
+++++=+-||--.-... -.+.-|+..+-+|+-+++.+. .+|+
T Consensus 135 ---N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 135 ---NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ---TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ---ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 89999999998642110 011235555556665666554 3453
No 23
>PLN02803 beta-amylase
Probab=97.72 E-value=0.00011 Score=84.15 Aligned_cols=80 Identities=25% Similarity=0.489 Sum_probs=62.9
Q ss_pred cccHHHHHHHHHHcCCCEEEEceecCccCC-cCceeeecCcchHHHHHHHHHHcCceE--EEecCcccccccCCC-----
Q 037925 33 PEVWPELIRKSKEGGLEVIETYVFWNYHEP-IRGQYYFEGRFDLVRFVKTVQEAGLFL--HLRIGPYACAEWNYG----- 104 (821)
Q Consensus 33 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~gL~V--ilrpGPYicaEw~~G----- 104 (821)
++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~I 179 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCSI 179 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 344577999999999999999999999998 499999996 677799999999994 5554 33433 122
Q ss_pred CCCccccc----CCCeee
Q 037925 105 GFPVWLHF----IPGIQF 118 (821)
Q Consensus 105 G~P~WL~~----~p~~~~ 118 (821)
-||.|+.+ +|+|.+
T Consensus 180 pLP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 180 PLPPWVLEEMSKNPDLVY 197 (548)
T ss_pred cCCHHHHHhhhcCCCceE
Confidence 28999975 577643
No 24
>PLN02161 beta-amylase
Probab=97.68 E-value=0.00014 Score=82.90 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=63.0
Q ss_pred cccHHHHHHHHHHcCCCEEEEceecCccCC-cCceeeecCcchHHHHHHHHHHcCceE--EEecCcccccccCCC-----
Q 037925 33 PEVWPELIRKSKEGGLEVIETYVFWNYHEP-IRGQYYFEGRFDLVRFVKTVQEAGLFL--HLRIGPYACAEWNYG----- 104 (821)
Q Consensus 33 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~gL~V--ilrpGPYicaEw~~G----- 104 (821)
++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-|
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NvGd~~~I 189 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMH-LFGGKGGI 189 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccCc
Confidence 444677899999999999999999999998 799999996 777899999999994 5553 33433 122
Q ss_pred CCCccccc----CCCeee
Q 037925 105 GFPVWLHF----IPGIQF 118 (821)
Q Consensus 105 G~P~WL~~----~p~~~~ 118 (821)
-||.|+.+ +|+|.+
T Consensus 190 pLP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYY 207 (531)
T ss_pred cCCHHHHhhhccCCCceE
Confidence 28999974 577654
No 25
>TIGR03356 BGL beta-galactosidase.
Probab=97.66 E-value=4.4e-05 Score=87.77 Aligned_cols=96 Identities=20% Similarity=0.156 Sum_probs=77.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCc-CceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCccccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPI-RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHF 112 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~ 112 (821)
..|+++|+.||++|+|++++-|.|.-.+|. +|++|.+|-.-.+++|+.+.++||.+|+--=. =.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHh
Confidence 568999999999999999999999999999 79999988889999999999999998866321 248999986
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 113 IPGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 113 ~p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
..+- .++...++-.+|.+.++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhC
Confidence 5442 235555666666666666666
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.51 E-value=0.00015 Score=81.45 Aligned_cols=114 Identities=20% Similarity=0.311 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHcCCCEEEEceecCccCCc-CceeeecCcchHHHHHHHHHHcCceEEEecCcccccc----cCCCCCCcc
Q 037925 35 VWPELIRKSKEGGLEVIETYVFWNYHEPI-RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAE----WNYGGFPVW 109 (821)
Q Consensus 35 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaE----w~~GG~P~W 109 (821)
.-+..|+++|++|+..|.+.|-|.+.|.. |++|||+| .+++.+++++.||++.+-..=.-|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 34678999999999999999999999997 99999996 78889999999999554322223321 111138999
Q ss_pred ccc---CCCeeeec--------------CChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 037925 110 LHF---IPGIQFRT--------------TNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQV 158 (821)
Q Consensus 110 L~~---~p~~~~R~--------------~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 158 (821)
+.. ..+|.... .... ++.-+.|++.....++ ++. +.|..|||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 973 22553211 1112 4444566666666666 432 67888886
No 27
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.49 E-value=0.00042 Score=75.79 Aligned_cols=225 Identities=22% Similarity=0.256 Sum_probs=112.0
Q ss_pred cceEE-ECCEEeEEEEEEeeC---CCCCcccHHHHHHHHHHcCCCEEEEcee--cCcc--------CC----cCceeeec
Q 037925 9 HRALV-IDGKRRVLQSGSIHY---PRSTPEVWPELIRKSKEGGLEVIETYVF--WNYH--------EP----IRGQYYFE 70 (821)
Q Consensus 9 ~~~~~-~dG~p~~~~sG~~Hy---~R~~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~h--------Ep----~~G~~df~ 70 (821)
++.|. -||+||+.++ .-.| .|...+.|+.-|+..|+.|||+|++=|+ |.-+ .| .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 7999999998 5555 3568899999999999999999999877 4422 12 12237777
Q ss_pred Cc-----chHHHHHHHHHHcCceEEEec---CcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 037925 71 GR-----FDLVRFVKTVQEAGLFLHLRI---GPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQ 142 (821)
Q Consensus 71 g~-----~dl~~fl~~a~~~gL~Vilrp---GPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~ 142 (821)
.- ..+++.|+.|.+.||.+-|-| +||+-.-|-+| | ..| =.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 54 489999999999999975543 33333333332 1 111 147789999999999996
Q ss_pred ccccccCCCceEEecccccccccccccCCCcHHHHHHHHHHhHhcCCccc-eeeccCC-CCC-----Cc--ccccC-CCc
Q 037925 143 ENLFASQGGPIILAQVENEYGNVEWAYGVGGELYVKWAADTAVNLNTSVP-WVMCQQE-DAP-----DP--IINTC-NGF 212 (821)
Q Consensus 143 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp-~~~~~~~-~~~-----~~--v~~~~-ng~ 212 (821)
++ +|| +=|-||+ . ......++.+.+.+.+++..-.-+ -++..+. ..+ .+ -+.+. .|-
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 64 465 5588998 1 223567888888888887643222 1222211 011 00 01111 121
Q ss_pred cc---CC-------CC-CCCCCCCeEeeec-ccccccccCCCCCCCCHHHHHHHHHHHHhcCC
Q 037925 213 YC---DG-------FT-PNSPSKPIMWTEN-YSGWFLSFGYAVPFRPVEDLAFAVARFFETGG 263 (821)
Q Consensus 213 ~~---~~-------~~-~~~~~~P~~~~E~-~~Gwf~~wg~~~~~~~~~~~~~~~~~~l~~g~ 263 (821)
.. +. +. ...|.+|.+..|- |.|--..+.......+++++...+=.-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11 00 11 4568899999996 34433332223334567777665434444555
No 28
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.0038 Score=67.96 Aligned_cols=133 Identities=20% Similarity=0.316 Sum_probs=100.1
Q ss_pred HHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccccCCCeeeecCC
Q 037925 43 SKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTN 122 (821)
Q Consensus 43 ~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~d 122 (821)
.|+.+.=|-+.-.=|+..||++|.|+|+ --++..+.|+++||. ||-=+.| |-+ -.|.||..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~--lhGHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMP--LHGHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCe--eccceee---ecc-cCCchhhccc-----cCh
Confidence 4444444445556699999999999999 478899999999995 3433333 544 7899998633 345
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccc----cc---cccCCCcHHHHHHHHHHhHhcCCccceee
Q 037925 123 NPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGN----VE---WAYGVGGELYVKWAADTAVNLNTSVPWVM 195 (821)
Q Consensus 123 p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~----~~---~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 195 (821)
++.++.+++++..++.+++ |-|+.|-|=||-=. +. +..+..+.+|+++.-..+|+.+-+.-++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7789999999999999998 35899999999632 11 11223578999999999999888777887
Q ss_pred ccC
Q 037925 196 CQQ 198 (821)
Q Consensus 196 ~~~ 198 (821)
++.
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 765
No 29
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.99 E-value=0.001 Score=73.83 Aligned_cols=157 Identities=15% Similarity=0.216 Sum_probs=108.2
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEc--eecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecCcccc
Q 037925 21 LQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETY--VFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYAC 98 (821)
Q Consensus 21 ~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~y--v~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYic 98 (821)
.++..++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+ -|
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv- 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV- 81 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE-
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE-
Confidence 788999988876542 3344444569998875 5699999999999999 89999999999999875331 11
Q ss_pred cccCCCCCCcccccCCCeeeecC-ChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccccccc---------c
Q 037925 99 AEWNYGGFPVWLHFIPGIQFRTT-NNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEW---------A 168 (821)
Q Consensus 99 aEw~~GG~P~WL~~~p~~~~R~~-dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~---------~ 168 (821)
|.. ..|.|+...+.. ... .+..++++++++++++.+++.. |.|.+|-|=||-=.... .
T Consensus 82 --W~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 82 --WHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp --ESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred --Ecc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCChh
Confidence 433 789999874110 000 1247889999999998888721 78999999999643211 0
Q ss_pred cCCCcHHHHHHHHHHhHhcCCccceeeccC
Q 037925 169 YGVGGELYVKWAADTAVNLNTSVPWVMCQQ 198 (821)
Q Consensus 169 ~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 198 (821)
+...+.+|+...-+++++...++.||.++.
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 111235788888888888878888888775
No 30
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.76 E-value=0.0026 Score=63.15 Aligned_cols=67 Identities=25% Similarity=0.528 Sum_probs=51.1
Q ss_pred CccceEEEEEEeCCCCC--CceEEeeCCC-ceEEEEECCeeeeeecccccCCCCCCCccccCCCCcCccccccCCCCCce
Q 037925 595 NKSLIWYKTTFLAPEGK--GPLALNLASM-GKGQAWVNGQSIGRYWSAYLAPSTGCTKKCDYRGSYDASKCQKHCGQPAQ 671 (821)
Q Consensus 595 ~~~~~~Yr~~F~~p~~~--dp~~Ld~~g~-gKG~vwVNG~nlGRYW~~~~~~~~G~~~~~~~~g~~~~~~~~~~~g~PQq 671 (821)
..+..|||.+|++|+.. ..++|.+.|. ....|||||+-||+-...+ ..
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~----------------------------~~- 116 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY----------------------------TP- 116 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT----------------------------S--
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc----------------------------CC-
Confidence 34679999999999743 3589999987 6899999999999976311 12
Q ss_pred EEeecCCcccccCC-ceeEEE
Q 037925 672 TLYHIPRTWVHPGE-NLLVIH 691 (821)
Q Consensus 672 tlYhVP~~~Lk~g~-N~lvvf 691 (821)
.-|-|+. .|++|+ |+|.|.
T Consensus 117 ~~~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 117 FEFDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp EEEECGG-GSSSEEEEEEEEE
T ss_pred eEEeChh-hccCCCCEEEEEE
Confidence 2356875 789888 988874
No 31
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.67 E-value=0.022 Score=57.44 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=82.2
Q ss_pred CCCCcccHHHHHHHHHHcCCCEEEEceecCccC-----Cc---CceeeecCcchHHHHHHHHHHcCceEEEecCcccccc
Q 037925 29 PRSTPEVWPELIRKSKEGGLEVIETYVFWNYHE-----PI---RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAE 100 (821)
Q Consensus 29 ~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-----p~---~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaE 100 (821)
..++++.|+.+|+.||++|+|||=+= |.-.+ |. ++.|.-....-|+.+|++|++.||+|++.-+-
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~----- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF----- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC-----
Confidence 47899999999999999999999431 22211 11 22333344568999999999999999988531
Q ss_pred cCCCCCCcccccCCCeeeecCChhH-HHHHHHHHHHHHHHHHhccccccCCCceEEecccccccccccccCCCcHHHHHH
Q 037925 101 WNYGGFPVWLHFIPGIQFRTTNNPF-KEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWAYGVGGELYVKW 179 (821)
Q Consensus 101 w~~GG~P~WL~~~p~~~~R~~dp~y-~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~ 179 (821)
-|.|... .|+.. .+..++..++|..+...|+ ..=++=|=.|..... ....+..+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~yg~h~-------sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQRYGHHP-------SFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHHcCCC-------CCceEEEecccCCcc----cchHHHHHH
Confidence 2334331 22222 2223345555555555333 566777888876642 234566666
Q ss_pred HHHHhHhcCCcccee
Q 037925 180 AADTAVNLNTSVPWV 194 (821)
Q Consensus 180 l~~~~~~~g~~vp~~ 194 (821)
|.+.+++.--+-|+.
T Consensus 144 l~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 144 LGKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHHhCCCCCeE
Confidence 666666543344443
No 32
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.53 E-value=0.00083 Score=78.01 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=71.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCc--CceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPI--RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLH 111 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~ 111 (821)
..|+++|+.||++|+|+.++-|-|.-.+|. +|++|-.|....+++|+.+.++||..|+-- ---.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 469999999999999999999999999999 699999999999999999999999966652 2446899998
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 112 FIPGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 112 ~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
+.-+- .++...+.-.+|.+.+++++.
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~g 155 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFG 155 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhC
Confidence 74442 235555666666666666666
No 33
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.31 E-value=0.012 Score=67.51 Aligned_cols=117 Identities=13% Similarity=0.054 Sum_probs=72.3
Q ss_pred CcccH-----HHHHHHHHHcCCCEEEEceecCccCCcC----ceeeecCcchHHHHHHHHHHcCceEEEecCcccccccC
Q 037925 32 TPEVW-----PELIRKSKEGGLEVIETYVFWNYHEPIR----GQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWN 102 (821)
Q Consensus 32 ~~~~W-----~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~ 102 (821)
....| ++.+..||.+|||+|++++.|-.+++.. ...+=+--.-|++.|+.|++.||+|+|-.-=| +.-
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~---~~~ 142 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGY---PGG 142 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEeccc---CCC
Confidence 45668 8999999999999999999944446643 22212211378999999999999999983211 000
Q ss_pred -CCCCCccccc-CCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccc
Q 037925 103 -YGGFPVWLHF-IPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGN 164 (821)
Q Consensus 103 -~GG~P~WL~~-~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 164 (821)
++-=..|... .+. ....+++-.+-++.|+.+.+ +.-.||++|+=||.-+
T Consensus 143 ~~~~~~s~~~~~~~~------~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 143 NNGHEHSGYTSDYKE------ENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred CCCcCcccccccccc------cchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 0011122221 111 22233444444555555555 3458999999999874
No 34
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.14 E-value=0.0042 Score=72.42 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCc--CceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPI--RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLH 111 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~ 111 (821)
..|+++++.||++|+|+.++-+-|.-.+|. +++++=+|-.-.+++|+.+.++||.+++-- --=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 446999999999999999999999999997 556788888899999999999999976653 1225899997
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 112 FI-PGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 112 ~~-p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
.. -+-.=|..=..|.++++..++++..+++
T Consensus 143 ~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk 173 (474)
T PRK09852 143 TEYGSWRNRKMVEFFSRYARTCFEAFDGLVK 173 (474)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhcCcCC
Confidence 53 4421122223455555555555555554
No 35
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.14 E-value=0.02 Score=69.01 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=57.9
Q ss_pred CCccEEEEEEEEecCCC-CCcceeEEeCCcceEEEEEECCEEEEEEEcccCcceeEEeeeecccCCcc-EEEEEEecc
Q 037925 451 DTSDYLWYTASIHVMPG-QGKEVFLNIESLGHAALVFVNKKLVAFGYGNHDFANFLINKKIELNEGIN-TLDILSMMV 526 (821)
Q Consensus 451 d~~Gyl~Y~t~v~~~~~-~~~~~~L~v~~~~D~a~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~~-~L~ILven~ 526 (821)
+..|..|||++|.++.. .+....|.+.++...+.|||||+.+|...+. ...+.|+++-.|+.|.+ +|.|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~--~~~f~~DIT~~l~~G~~n~L~V~v~n~ 137 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGG--YTPFEADITPYVYAGKSVRITVCVNNE 137 (604)
T ss_pred CCcccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeEcCC--ccceEEeCchhccCCCceEEEEEEecC
Confidence 36788999999988643 2467899999999999999999999998654 24466665555777754 999999774
No 36
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.13 E-value=0.016 Score=64.41 Aligned_cols=104 Identities=24% Similarity=0.441 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCcC-ceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccccCCC
Q 037925 37 PELIRKSKEGGLEVIETYVFWNYHEPIR-GQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPG 115 (821)
Q Consensus 37 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~ 115 (821)
+|.|+-+|+.|+|.|+.=| |+ .|.. |..|.+ +..+..+.|+++||+|+|-+- |- -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 5899999999999999998 54 4544 555555 566666667889999999863 21 1222 233
Q ss_pred eee------ecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccc
Q 037925 116 IQF------RTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGN 164 (821)
Q Consensus 116 ~~~------R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 164 (821)
-.. -.+-..-.++|..|.+.++..|+.. |=.+=||||-||...
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~------G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA------GVTPDMVQVGNEINN 137 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT------T--ESEEEESSSGGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCccEEEeCccccc
Confidence 111 1133556789999999999999944 557789999999753
No 37
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.05 E-value=0.024 Score=72.10 Aligned_cols=91 Identities=22% Similarity=0.285 Sum_probs=65.9
Q ss_pred cEEEEEEEEecCCC-CCcceeEEeCCcceEEEEEECCEEEEEEEcccCcceeEEeeeecccCCccEEEEEEeccCccccc
Q 037925 454 DYLWYTASIHVMPG-QGKEVFLNIESLGHAALVFVNKKLVAFGYGNHDFANFLINKKIELNEGINTLDILSMMVGLQNYG 532 (821)
Q Consensus 454 Gyl~Y~t~v~~~~~-~~~~~~L~v~~~~D~a~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~Gr~NyG 532 (821)
+-.|||++|.++.. .+....|.+.++...+.|||||+++|...+. ...+.|++.--|+.|.|+|.|.|.+... |
T Consensus 109 ~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~--~~pfefDIT~~l~~G~N~LaV~V~~~~d---~ 183 (1021)
T PRK10340 109 PTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFSKGS--RLTAEFDISAMVKTGDNLLCVRVMQWAD---S 183 (1021)
T ss_pred CeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEeccccCC--CccEEEEcchhhCCCccEEEEEEEecCC---C
Confidence 56799999988643 2456899999999999999999999987653 3446666655577888999999875332 2
Q ss_pred ccccc----ccccee-EEEECc
Q 037925 533 AWFDV----AGAGLF-SVILID 549 (821)
Q Consensus 533 ~~l~~----~~kGI~-~V~l~g 549 (821)
..++. ...||. +|.|.-
T Consensus 184 s~le~qd~w~~sGI~R~V~L~~ 205 (1021)
T PRK10340 184 TYLEDQDMWWLAGIFRDVYLVG 205 (1021)
T ss_pred CccccCCccccccccceEEEEE
Confidence 22221 246887 888844
No 38
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=95.98 E-value=0.0069 Score=70.73 Aligned_cols=96 Identities=18% Similarity=0.132 Sum_probs=72.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCc--CceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPI--RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLH 111 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~ 111 (821)
..|+++|+.||++|+|+-++-|-|.-..|. +|++|-.|..-.+++|+.+.++||..++-- --=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 468999999999999999999999999997 567888898999999999999999977653 1124899997
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 112 FI-PGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 112 ~~-p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
.. -|- .++...++-.+|.+.++++++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 63 442 234444444444444444444
No 39
>PLN02998 beta-glucosidase
Probab=95.90 E-value=0.0075 Score=70.75 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=78.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCc-CceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCccccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPI-RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHF 112 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~ 112 (821)
..|+++|+.||++|+|+-++-|-|.-.+|. .|.+|-+|..-.+++|+.+.++||..++--= =| -+|.||..
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 468999999999999999999999999997 6788889999999999999999998665421 13 37999986
Q ss_pred -CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 113 -IPGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 113 -~p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
+-|-.=|..=..|.++++..++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 35532233335677777777777777776
No 40
>PLN02814 beta-glucosidase
Probab=95.66 E-value=0.01 Score=69.76 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=77.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCc-CceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCccccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPI-RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHF 112 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~ 112 (821)
..|+++++.||++|+|+-++-|-|.-.+|. +|.+|-+|..-.+++|+.+.++||..++--= =|+ +|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~d---lP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HYD---LPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHHH
Confidence 468999999999999999999999999996 6889999999999999999999998665421 143 6999986
Q ss_pred C-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 113 I-PGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 113 ~-p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
. -|-.=|..=..|.++++..++++..+++
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 3 5532233334567777777777766666
No 41
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.63 E-value=0.048 Score=69.41 Aligned_cols=92 Identities=15% Similarity=0.214 Sum_probs=64.7
Q ss_pred ccEEEEEEEEecCCCC-Cc-ceeEEeCCcceEEEEEECCEEEEEEEcccCcceeEEeeeecccCCccEEEEEEeccCccc
Q 037925 453 SDYLWYTASIHVMPGQ-GK-EVFLNIESLGHAALVFVNKKLVAFGYGNHDFANFLINKKIELNEGINTLDILSMMVGLQN 530 (821)
Q Consensus 453 ~Gyl~Y~t~v~~~~~~-~~-~~~L~v~~~~D~a~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~Gr~N 530 (821)
.+-.|||++|.++..- +. ...|.+.++.-.+.|||||+++|...+. ...+.|++.-.|+.|.|+|.|.|..--
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~--~~pfefDIT~~l~~G~N~L~V~V~~~s--- 193 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDS--RLPAEFDLSPFLRAGENRLAVMVLRWS--- 193 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEeecCC--CceEEEEChhhhcCCccEEEEEEEecC---
Confidence 3678999999886431 23 6789999999999999999999987653 344666665557888999999884321
Q ss_pred ccccccc----ccccee-EEEECc
Q 037925 531 YGAWFDV----AGAGLF-SVILID 549 (821)
Q Consensus 531 yG~~l~~----~~kGI~-~V~l~g 549 (821)
.|..++. ...||. +|.|.-
T Consensus 194 dgs~~e~qd~w~~sGI~R~V~L~~ 217 (1027)
T PRK09525 194 DGSYLEDQDMWRMSGIFRDVSLLH 217 (1027)
T ss_pred CCCccccCCceeeccccceEEEEE
Confidence 1222221 236888 888743
No 42
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.62 E-value=0.011 Score=69.00 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=75.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCc-CceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCccccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPI-RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHF 112 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~ 112 (821)
..|+++|+.||++|+|+-++-|.|.-.+|. .|.+|-.|..-.+++|+.+.++||.-++--= =| .+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-----HF---DTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCcHHHHH
Confidence 458999999999999999999999999997 5788889999999999999999998665421 12 48999987
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 113 IPGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 113 ~p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
.-|-.=|..=..|.++++..++++.. ++
T Consensus 126 ~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk 153 (469)
T PRK13511 126 NGDWLNRENIDHFVRYAEFCFEEFPE-VK 153 (469)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCC-CC
Confidence 54421122224566666666666666 55
No 43
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.57 E-value=0.015 Score=68.06 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=78.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCc--CceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPI--RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLH 111 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~ 111 (821)
..|+++|+.||++|+|+-++-|-|.-.+|. +|++|=.|..-.+++|+.+.++||..++--= =| -+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-----H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-----HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCCHHHH
Confidence 568999999999999999999999999997 6678888889999999999999998665420 13 4799998
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 112 FI-PGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 112 ~~-p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
.. -|-.=|..=..|.++++..++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 63 5532233235577777777777777776
No 44
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.49 E-value=0.014 Score=68.05 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCc-CceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCccccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPI-RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHF 112 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~ 112 (821)
..|+++|+.||++|+|+-++-|-|.-.+|. +|.+|=+|..-.+++|+.+.++||..++--= | | -+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~---H--~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH---H--F---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc---C--C---CCcHHHHH
Confidence 458999999999999999999999999996 6788888999999999999999999666531 1 3 38999987
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHH
Q 037925 113 IPGIQFRTTNNPFKEEMKRFLAKIID 138 (821)
Q Consensus 113 ~p~~~~R~~dp~y~~~~~~~~~~l~~ 138 (821)
..|-.=|..=..|.++++..++++..
T Consensus 125 ~GGW~n~~~v~~F~~YA~~~f~~fgd 150 (467)
T TIGR01233 125 NGDFLNRENIEHFIDYAAFCFEEFPE 150 (467)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 64432233334455666555555553
No 45
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.38 E-value=0.017 Score=67.61 Aligned_cols=100 Identities=17% Similarity=0.136 Sum_probs=78.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCc--CceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPI--RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLH 111 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~ 111 (821)
..|+++|+.||++|+|+-++-|-|.-.+|. +|.++=.|-.-.+++|+.+.++||..++--= =| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHHH
Confidence 458999999999999999999999999997 5678888888999999999999998665431 13 4799997
Q ss_pred c-CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 112 F-IPGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 112 ~-~p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
. +-|-.=|..=..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 6 35532233335677777777777777776
No 46
>PLN02849 beta-glucosidase
Probab=95.36 E-value=0.015 Score=68.36 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=77.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCc-CceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCccccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPI-RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHF 112 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~ 112 (821)
..|+++|+.||++|+|+-++-|-|.-.+|. .|.+|=.|..-.+++|+.+.++||.-++--= =| -+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHHH
Confidence 458999999999999999999999999997 4778888999999999999999998665421 13 37999986
Q ss_pred C-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 113 I-PGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 113 ~-p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
. -|-.=|..=..|.++++..++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 5532233334577777777777777776
No 47
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.88 E-value=0.13 Score=55.55 Aligned_cols=118 Identities=20% Similarity=0.268 Sum_probs=79.7
Q ss_pred HHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHH---HcCceEEEecCcccccccCCCCCCccccc
Q 037925 36 WPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQ---EAGLFLHLRIGPYACAEWNYGGFPVWLHF 112 (821)
Q Consensus 36 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~---~~gL~VilrpGPYicaEw~~GG~P~WL~~ 112 (821)
=.|.|+-+|+.|+|-|+.-| ||.---..|.=-=.|+.|+.+.|++|+ +.||+|+|-+= .-.|..+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwaD 132 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWAD 132 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhccC
Confidence 36889999999999999876 766544445544567789999999885 57999999852 1122211
Q ss_pred -----CCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccc-cccccCC
Q 037925 113 -----IPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGN-VEWAYGV 171 (821)
Q Consensus 113 -----~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~-~~~~~~~ 171 (821)
.|....-.+-..-.+++-.|.+..+..++++ |=-+=||||-||-.+ +-+..|+
T Consensus 133 PakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~gflwp~Ge 191 (403)
T COG3867 133 PAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNGGFLWPDGE 191 (403)
T ss_pred hhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCCceeccCCC
Confidence 1211112233445678888999999998854 445679999999754 3333453
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.18 E-value=0.24 Score=48.03 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCCEEEEcee----c-----CccCCcCceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCc
Q 037925 38 ELIRKSKEGGLEVIETYVF----W-----NYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPV 108 (821)
Q Consensus 38 ~~l~k~ka~G~N~V~~yv~----W-----n~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~ 108 (821)
.-++.+|++|+|+|.++.- | .+|.+.|+- . ..-|.++++.|++.||.|++|...- --|+-.---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L---~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL---K-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC---C-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3467889999999999543 2 334445543 1 2256999999999999999997644 22333445699
Q ss_pred ccccCCCee-------------eecCChhHHHHHHHHHHHHHHHH
Q 037925 109 WLHFIPGIQ-------------FRTTNNPFKEEMKRFLAKIIDLM 140 (821)
Q Consensus 109 WL~~~p~~~-------------~R~~dp~y~~~~~~~~~~l~~~l 140 (821)
|+..+++-+ .-+.|..|++.+.+-+++|+..+
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 998644322 12335578877777777665544
No 49
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.83 E-value=0.068 Score=61.56 Aligned_cols=100 Identities=21% Similarity=0.282 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCcCce--eeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQ--YYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLH 111 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~--~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~ 111 (821)
..++++++.||+||+|+.++-|-|.-.-|..+. .+=.|-.-.+++|+.|.++|+.-++--- =|+ +|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHHh
Confidence 457899999999999999999999999997654 8888989999999999999999666531 133 699998
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 112 FI-PGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 112 ~~-p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
+. .|-.=|..=..|.++++--+++.-..++
T Consensus 131 ~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 131 KPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred hccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 74 4533333334565555555555555555
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.31 E-value=0.5 Score=52.39 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=72.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecC-------ccCCcCceeee-----cCcchHHHHHHHHHHcCceEEEecCccccc
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWN-------YHEPIRGQYYF-----EGRFDLVRFVKTVQEAGLFLHLRIGPYACA 99 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn-------~hEp~~G~~df-----~g~~dl~~fl~~a~~~gL~VilrpGPYica 99 (821)
.++.-++.|++++++|||+|-.=|-+. -.+|..+..-. -|---|..+|+.|++.||.|..+. .+--.
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~-~~~~~ 95 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWF-RVGFN 95 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEE-EeecC
Confidence 677788999999999999997766542 22221110000 012269999999999999999776 11111
Q ss_pred ccCCC----CCCcccc-cCCCeeeec----C-----ChhHHHHHHHHHHHHHHHHH-hccccccCCCceEEecccc
Q 037925 100 EWNYG----GFPVWLH-FIPGIQFRT----T-----NNPFKEEMKRFLAKIIDLMK-QENLFASQGGPIILAQVEN 160 (821)
Q Consensus 100 Ew~~G----G~P~WL~-~~p~~~~R~----~-----dp~y~~~~~~~~~~l~~~l~-~~~~~~~~gGpII~~QiEN 160 (821)
-...+ .-|.|+. +.++..... . ||. ..+|+.|+..++..|. ++ +|=++|++-
T Consensus 96 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~-~PeVr~~i~~~v~Eiv~~Y--------dvDGIhlDd 162 (311)
T PF02638_consen 96 APDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPG-HPEVRDYIIDIVKEIVKNY--------DVDGIHLDD 162 (311)
T ss_pred CCchhhhhhcCchhheecCCCceeecccCCCCceEECCC-CHHHHHHHHHHHHHHHhcC--------CCCeEEecc
Confidence 00111 2488876 456533322 1 232 3678888777777664 33 466888873
No 51
>PRK09936 hypothetical protein; Provisional
Probab=91.60 E-value=0.37 Score=52.35 Aligned_cols=57 Identities=26% Similarity=0.393 Sum_probs=47.0
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCc-chHHHHHHHHHHcCceEEEe
Q 037925 30 RSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGR-FDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 30 R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~-~dl~~fl~~a~~~gL~Vilr 92 (821)
+++++.|+.+++.+|+.|++|+= |=|.-- |.=||.|. ..|.+.++.|++.||.|+|.
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLi--vQWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLV--VQWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEE--EEeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 57999999999999999999974 456444 11188875 49999999999999999886
No 52
>smart00642 Aamy Alpha-amylase domain.
Probab=91.53 E-value=0.43 Score=48.07 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHcCCCEEEEceecCccC-------CcCcee-----eecCcchHHHHHHHHHHcCceEEEecCcccccc
Q 037925 35 VWPELIRKSKEGGLEVIETYVFWNYHE-------PIRGQY-----YFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAE 100 (821)
Q Consensus 35 ~W~~~l~k~ka~G~N~V~~yv~Wn~hE-------p~~G~~-----df~g~~dl~~fl~~a~~~gL~VilrpGPYicaE 100 (821)
-+.+.|..+|++|+|+|.+-=++..-+ -.+..| .|....+|.+|++.|+++||.||+-.=|-=++.
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 355667779999999998854332221 122222 455668999999999999999999865444443
No 53
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=91.48 E-value=18 Score=41.36 Aligned_cols=246 Identities=15% Similarity=0.149 Sum_probs=126.3
Q ss_pred eeCCCCCcccHHHHHHHHHHcCCCEEEE-------ceecCccCCcCceeeec-CcchHHHHHHHHHHcCceEEEecCccc
Q 037925 26 IHYPRSTPEVWPELIRKSKEGGLEVIET-------YVFWNYHEPIRGQYYFE-GRFDLVRFVKTVQEAGLFLHLRIGPYA 97 (821)
Q Consensus 26 ~Hy~R~~~~~W~~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~df~-g~~dl~~fl~~a~~~gL~VilrpGPYi 97 (821)
|.+.+..++.|. +.+|++|+.-|-. +-.|.-....-..-+-. ++--|..|.+.|+++||++-|=-.+
T Consensus 76 F~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-- 150 (384)
T smart00812 76 FTAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-- 150 (384)
T ss_pred CCchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH--
Confidence 444556777775 4678888886643 22355543321111211 2234567888999999977664332
Q ss_pred ccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccccccccCCCcHHHH
Q 037925 98 CAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWAYGVGGELYV 177 (821)
Q Consensus 98 caEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~ 177 (821)
.+|.. |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-|++- +-..+.. ...--.
T Consensus 151 -~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~ 212 (384)
T smart00812 151 -FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRS 212 (384)
T ss_pred -HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcH
Confidence 36754 5443221111234456788888888888888888743 3444442 2111110 011114
Q ss_pred HHHHHHhHhcCCcc-ceeeccCCCCCCcccccCCCcc--c-CCCCCC-CCCCCe-EeeecccccccccCC-CCCCCCHHH
Q 037925 178 KWAADTAVNLNTSV-PWVMCQQEDAPDPIINTCNGFY--C-DGFTPN-SPSKPI-MWTENYSGWFLSFGY-AVPFRPVED 250 (821)
Q Consensus 178 ~~l~~~~~~~g~~v-p~~~~~~~~~~~~v~~~~ng~~--~-~~~~~~-~~~~P~-~~~E~~~Gwf~~wg~-~~~~~~~~~ 250 (821)
+.|.++++++.-+. -.+.++... . .... .|.+ + +...+. ....|- .++=.-.+|+=+-++ .....++++
T Consensus 213 ~~l~~~~~~~qP~~~~vvvn~R~~-~--~~~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~ 288 (384)
T smart00812 213 KEFLAWLYNLSPVKDTVVVNDRWG-G--TGCK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKE 288 (384)
T ss_pred HHHHHHHHHhCCCCceEEEEcccc-c--cCCC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHH
Confidence 45666666654432 112233221 0 0000 0100 1 111110 011121 011111245444443 233678999
Q ss_pred HHHHHHHHHhcCCeeeeeeeeecCCCCCCCCCCCCccccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhcc
Q 037925 251 LAFAVARFFETGGTFQNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRELHKAIKLCEEY 323 (821)
Q Consensus 251 ~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdAPL~E~G~~~tpKy~~lr~l~~~i~~~~~~ 323 (821)
+...+.+++++|++++ +| -+-+.+|.+....-..|+++.+.++...+.
T Consensus 289 li~~l~~~Vsk~GnlL-------------LN------------VgP~~dG~ip~~~~~~L~~iG~Wl~~ngea 336 (384)
T smart00812 289 LIRDLVDIVSKGGNLL-------------LN------------VGPKADGTIPEEEEERLLEIGKWLKVNGEA 336 (384)
T ss_pred HHHHHhhhcCCCceEE-------------Ec------------cCCCCCCCCCHHHHHHHHHHHHHHHhCCce
Confidence 9999999999998852 12 123457777666778899999988765544
No 54
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=91.31 E-value=2.8 Score=45.28 Aligned_cols=127 Identities=18% Similarity=0.249 Sum_probs=77.7
Q ss_pred cccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEE-EecCcccccccCCCCCCcccc
Q 037925 33 PEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLH-LRIGPYACAEWNYGGFPVWLH 111 (821)
Q Consensus 33 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vi-lrpGPYicaEw~~GG~P~WL~ 111 (821)
...|++.|+.++++|++.|++-+ +.. ...+...+++ ..++..+.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 46799999999999999999943 222 2223445555 3578999999999999865 44321 11111
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccccccccCCC-------cHHHHHHHHHHh
Q 037925 112 FIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWAYGVG-------GELYVKWAADTA 184 (821)
Q Consensus 112 ~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~-------~~~y~~~l~~~~ 184 (821)
+-+.|+.-+++..+.+++.+...+ .+ |.++|.+-- .++. ++.. -.+.++.|.+.+
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~-~~~~-----~~~~~~~~~~~~~~~l~~l~~~A 142 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLAG-YDVY-----YEEHDEETRRRFREGLKEAVELA 142 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEecC-cccc-----cCcCCHHHHHHHHHHHHHHHHHH
Confidence 123356666677777777777777 33 567765421 1110 1111 124556666777
Q ss_pred HhcCCcc
Q 037925 185 VNLNTSV 191 (821)
Q Consensus 185 ~~~g~~v 191 (821)
++.|+.+
T Consensus 143 ~~~Gv~l 149 (279)
T TIGR00542 143 ARAQVTL 149 (279)
T ss_pred HHcCCEE
Confidence 7777754
No 55
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.24 E-value=2.3 Score=51.59 Aligned_cols=70 Identities=21% Similarity=0.130 Sum_probs=45.8
Q ss_pred EEeeCCCCCc-ccHHH---HH-HHHHHcCCCEEEE-ceecCccCC----cCc-----eeeecCcchHHHHHHHHHHcCce
Q 037925 24 GSIHYPRSTP-EVWPE---LI-RKSKEGGLEVIET-YVFWNYHEP----IRG-----QYYFEGRFDLVRFVKTVQEAGLF 88 (821)
Q Consensus 24 G~~Hy~R~~~-~~W~~---~l-~k~ka~G~N~V~~-yv~Wn~hEp----~~G-----~~df~g~~dl~~fl~~a~~~gL~ 88 (821)
=|+|..-..+ -.++. +| .-+|++|+|+|+. .|+..-... .+- .-.|.+..||.+|++.|++.||.
T Consensus 142 Ye~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~ 221 (613)
T TIGR01515 142 YELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIG 221 (613)
T ss_pred EEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCE
Confidence 3666533322 23433 43 6779999999999 777532111 000 11345567999999999999999
Q ss_pred EEEec
Q 037925 89 LHLRI 93 (821)
Q Consensus 89 Vilrp 93 (821)
|||-.
T Consensus 222 VilD~ 226 (613)
T TIGR01515 222 VILDW 226 (613)
T ss_pred EEEEe
Confidence 99984
No 56
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.20 E-value=0.21 Score=57.22 Aligned_cols=158 Identities=11% Similarity=0.116 Sum_probs=107.4
Q ss_pred eEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCcc-CC---cCceeee-cCcchHHHHHHHHHHc
Q 037925 11 ALVIDGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYH-EP---IRGQYYF-EGRFDLVRFVKTVQEA 85 (821)
Q Consensus 11 ~~~~dG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~h-Ep---~~G~~df-~g~~dl~~fl~~a~~~ 85 (821)
.|.++++++..++..=-+.++-.++-+++|.-|+-+|++++++. .+- |+ ++|.-+- ++..-++.|++.|..+
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 47888888888877777777777778889999999999999986 455 66 3343222 2345789999999999
Q ss_pred CceEEEecCcccccccCCCCCCc---ccc-cCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc
Q 037925 86 GLFLHLRIGPYACAEWNYGGFPV---WLH-FIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENE 161 (821)
Q Consensus 86 gL~VilrpGPYicaEw~~GG~P~---WL~-~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 161 (821)
+|+|+++- |..==.+||.=. |-- +.|+=.+ -||.++..-++|...+++-.+. ...|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk~-------~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYKL-------DPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhcc-------ChHHHHHHhcCC
Confidence 99999883 333224556422 331 1232111 2666777778888888775553 347888999999
Q ss_pred ccccccccCCCcHHHHHHHHHHhHh
Q 037925 162 YGNVEWAYGVGGELYVKWAADTAVN 186 (821)
Q Consensus 162 yg~~~~~~~~~~~~y~~~l~~~~~~ 186 (821)
.... -...+..+++|++.|+--
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~y 169 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYAY 169 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHHH
Confidence 3211 123577899999999743
No 57
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.21 E-value=5.7 Score=49.22 Aligned_cols=53 Identities=23% Similarity=0.162 Sum_probs=37.1
Q ss_pred HHHHHcCCCEEEE-ceecC----ccCCcCcee-----eecCcchHHHHHHHHHHcCceEEEec
Q 037925 41 RKSKEGGLEVIET-YVFWN----YHEPIRGQY-----YFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 41 ~k~ka~G~N~V~~-yv~Wn----~hEp~~G~~-----df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.-+|++|+|+|.. .|+=. .|--.+..| .|.+..||.+|++.|+++||.|||-.
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 6679999999998 56410 011111111 24556799999999999999999974
No 58
>PRK14706 glycogen branching enzyme; Provisional
Probab=87.14 E-value=6.6 Score=47.93 Aligned_cols=53 Identities=17% Similarity=0.180 Sum_probs=36.1
Q ss_pred HHHHHcCCCEEEE-cee-------cCccCC--cCceeeecCcchHHHHHHHHHHcCceEEEec
Q 037925 41 RKSKEGGLEVIET-YVF-------WNYHEP--IRGQYYFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 41 ~k~ka~G~N~V~~-yv~-------Wn~hEp--~~G~~df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.-+|++|+|+|+. .|. |.+.-- ..=.=.|.+..||.+|++.|+++||.|||-.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 5689999999997 342 322110 0001123445799999999999999999874
No 59
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=86.48 E-value=1 Score=52.91 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=43.2
Q ss_pred cccHH---HHHHHHHHcCCCEEEE-ceecCc-----cCCcCc-ee-------------eecCcchHHHHHHHHHHcCceE
Q 037925 33 PEVWP---ELIRKSKEGGLEVIET-YVFWNY-----HEPIRG-QY-------------YFEGRFDLVRFVKTVQEAGLFL 89 (821)
Q Consensus 33 ~~~W~---~~l~k~ka~G~N~V~~-yv~Wn~-----hEp~~G-~~-------------df~g~~dl~~fl~~a~~~gL~V 89 (821)
.+.|. +.|.-+|++|+++|-+ .++-+. |--.+- -| .|....||.++++.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 45675 4667779999999988 455432 322221 22 2345679999999999999999
Q ss_pred EEec
Q 037925 90 HLRI 93 (821)
Q Consensus 90 ilrp 93 (821)
||-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9985
No 60
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.33 E-value=4.9 Score=43.17 Aligned_cols=131 Identities=19% Similarity=0.239 Sum_probs=75.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEE-EecCcccccccCCCCCCccccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLH-LRIGPYACAEWNYGGFPVWLHF 112 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vi-lrpGPYicaEw~~GG~P~WL~~ 112 (821)
-.|++.|+.++++|+..|++.+. ..|+ .....+|+ ..++..+-++++++||.|. +.++ +.-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc---
Confidence 47999999999999999999632 2221 11123343 3478999999999999865 3222 11000
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccccc--cccCCCcHHHHHHHHHHhHhcCCc
Q 037925 113 IPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVE--WAYGVGGELYVKWAADTAVNLNTS 190 (821)
Q Consensus 113 ~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~ 190 (821)
.+.+.|+.-+++..+.+++++...+ -+ |.++|.+---..+.... ..+ ..-.+.++.|.+++.+.|+.
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 1234566666666677777777776 33 45666542100000000 000 01125677788888888876
Q ss_pred c
Q 037925 191 V 191 (821)
Q Consensus 191 v 191 (821)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 4
No 61
>PRK01060 endonuclease IV; Provisional
Probab=85.74 E-value=10 Score=40.87 Aligned_cols=93 Identities=17% Similarity=0.251 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceE---EEecCcccccccCCCCCCccccc
Q 037925 36 WPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFL---HLRIGPYACAEWNYGGFPVWLHF 112 (821)
Q Consensus 36 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~V---ilrpGPYicaEw~~GG~P~WL~~ 112 (821)
+++.|++++++|++.|+..+. +-|+-..+.++- .++.++-++++++||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 889999999999999999653 222222222222 26888999999999973 32 23331
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 037925 113 IPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQ 157 (821)
Q Consensus 113 ~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 157 (821)
+.+-+.|+..+++..+.+++.+...+ .+ |-++|-+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345678888888888888888777 33 44555554
No 62
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=85.69 E-value=1.3 Score=54.64 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEc-ee-------cCccCC---cCceeeecCcchHHHHHHHHHHcCceEEEecC
Q 037925 34 EVWPELIRKSKEGGLEVIETY-VF-------WNYHEP---IRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIG 94 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~y-v~-------Wn~hEp---~~G~~df~g~~dl~~fl~~a~~~gL~VilrpG 94 (821)
+.|++.|..+|++|+|+|+.- |+ |.++-. .+ .-.|.+..+|.+||+.|+++||.|||-.=
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV 321 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVV 321 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 457889999999999999873 32 433311 00 11355567999999999999999998753
No 63
>PRK12568 glycogen branching enzyme; Provisional
Probab=85.61 E-value=11 Score=46.70 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=39.8
Q ss_pred HHHHHHHcCCCEEEE-cee-------cCccCCcCcee----eecCcchHHHHHHHHHHcCceEEEecCc
Q 037925 39 LIRKSKEGGLEVIET-YVF-------WNYHEPIRGQY----YFEGRFDLVRFVKTVQEAGLFLHLRIGP 95 (821)
Q Consensus 39 ~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G~~----df~g~~dl~~fl~~a~~~gL~VilrpGP 95 (821)
.|.-+|++|+|+|+. .|+ |.+.- -|-| .|.+..+|.+|++.|+++||.|||-.=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 367789999999987 453 43211 0111 3556679999999999999999998533
No 64
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=82.98 E-value=2.1 Score=43.10 Aligned_cols=124 Identities=17% Similarity=0.156 Sum_probs=74.1
Q ss_pred HHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccccCCCeeee
Q 037925 40 IRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFR 119 (821)
Q Consensus 40 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R 119 (821)
|+.++++|+..|+....+....... ...++++.++++++||.|..--.+.. + . .+....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~---~-------~~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---F---W-------SPDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---S---S-------CTGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---c---c-------ccccccc
Confidence 6789999999999976644333222 34799999999999999653321110 0 0 0111134
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccc--ccccccc--cccCCCcHHHHHHHHHHhHhcCCcc
Q 037925 120 TTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVE--NEYGNVE--WAYGVGGELYVKWAADTAVNLNTSV 191 (821)
Q Consensus 120 ~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE--NEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~v 191 (821)
+.++. ++...+.+.+.+...+ .+ |.+.|.+..= +...... ..+ ..-.+.++.|.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 44444 7777788888888888 33 5677777743 1111100 000 022356677777777778664
No 65
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=82.49 E-value=10 Score=40.83 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=60.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHc-CceEEEecCcccccccCCCCCCccccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEA-GLFLHLRIGPYACAEWNYGGFPVWLHF 112 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~-gL~VilrpGPYicaEw~~GG~P~WL~~ 112 (821)
.-|++.|+.+|++|++.|++-+........ ......+++++.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 779999999999999999997754211111 111446899999999999 7665543 2321
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccc
Q 037925 113 IPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVE 159 (821)
Q Consensus 113 ~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE 159 (821)
..+.+.++.-+++....+++.++..+ .+ |-+.|.+..-
T Consensus 70 ---~~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g 107 (279)
T cd00019 70 ---INLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPG 107 (279)
T ss_pred ---eccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCC
Confidence 11223345455555566666666666 22 4456666543
No 66
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=82.37 E-value=6.2 Score=46.48 Aligned_cols=67 Identities=22% Similarity=0.296 Sum_probs=43.0
Q ss_pred EEEeeCCCCCcccHHHHHHHHH-HcCCCEEEEceecCccC--------CcCc--eeeecCcchHHHHHHHHHHcCceEEE
Q 037925 23 SGSIHYPRSTPEVWPELIRKSK-EGGLEVIETYVFWNYHE--------PIRG--QYYFEGRFDLVRFVKTVQEAGLFLHL 91 (821)
Q Consensus 23 sG~~Hy~R~~~~~W~~~l~k~k-a~G~N~V~~yv~Wn~hE--------p~~G--~~df~g~~dl~~fl~~a~~~gL~Vil 91 (821)
-|+=|....-++.|+..|+.++ +.||.-|++- |-++. ..+| .|||+ .||++++...++||+-++
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h--~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~v 102 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFH--GLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFV 102 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES---TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEE--eeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEE
Confidence 3555555567888999999997 7799998752 22211 1233 39999 999999999999999777
Q ss_pred ecC
Q 037925 92 RIG 94 (821)
Q Consensus 92 rpG 94 (821)
..|
T Consensus 103 el~ 105 (486)
T PF01229_consen 103 ELG 105 (486)
T ss_dssp EE-
T ss_pred EEE
Confidence 755
No 67
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=82.07 E-value=14 Score=41.69 Aligned_cols=135 Identities=16% Similarity=0.298 Sum_probs=89.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHH---HcCceEEEecCcccccccCCCCC-C
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQ---EAGLFLHLRIGPYACAEWNYGGF-P 107 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~---~~gL~VilrpGPYicaEw~~GG~-P 107 (821)
.|+..+.-++.+|+.||+.-..|-.| |.|.+-|++-++..- +.+|...|. |.+.-- =
T Consensus 56 ~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~~ 116 (345)
T PF14307_consen 56 DPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC--------WANENWTR 116 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhhh
Confidence 67888899999999999999999888 667777777776653 345655565 544211 1
Q ss_pred cccccCCCeeeecCChhHH--HHHHHHHHHHHHHHHhccccccCCCceEEecccccccccccccCCCcHHHHHHHHHHhH
Q 037925 108 VWLHFIPGIQFRTTNNPFK--EEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWAYGVGGELYVKWAADTAV 185 (821)
Q Consensus 108 ~WL~~~p~~~~R~~dp~y~--~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 185 (821)
.|-.....+.+- ..|. +..+++++.|++.+++..+.--+|-||+++=--.+. ..-+++++.+++.++
T Consensus 117 ~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 122222222111 1221 224677788888888766666688899987432211 245789999999999
Q ss_pred hcCCccceeec
Q 037925 186 NLNTSVPWVMC 196 (821)
Q Consensus 186 ~~g~~vp~~~~ 196 (821)
++|+..+.+..
T Consensus 186 ~~G~~giyii~ 196 (345)
T PF14307_consen 186 EAGLPGIYIIA 196 (345)
T ss_pred HcCCCceEEEE
Confidence 99998765543
No 68
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=81.87 E-value=2.2 Score=50.96 Aligned_cols=53 Identities=28% Similarity=0.420 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCCEEEE-cee-------cCcc-----CCcCceeeecCcchHHHHHHHHHHcCceEEEec
Q 037925 38 ELIRKSKEGGLEVIET-YVF-------WNYH-----EPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 38 ~~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
++|.-+|++|+|+|.. .|+ |.+. .|.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3688899999999987 453 4322 2211 34566799999999999999999974
No 69
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=81.86 E-value=5.2 Score=44.56 Aligned_cols=109 Identities=22% Similarity=0.313 Sum_probs=71.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEE-------ceecCccCCcCceeeec-C-cchHHHHHHHHHHcCceEEEecCccc---cc
Q 037925 32 TPEVWPELIRKSKEGGLEVIET-------YVFWNYHEPIRGQYYFE-G-RFDLVRFVKTVQEAGLFLHLRIGPYA---CA 99 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~df~-g-~~dl~~fl~~a~~~gL~VilrpGPYi---ca 99 (821)
.++.-+..|+.+|+.|+|+|-+ .|.+..-.|..-+..-. . ..|+.++++.++++|||+|.|.=-+- -|
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la 90 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLA 90 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHh
Confidence 3466788999999999999976 35565555544333222 1 36999999999999999999963211 01
Q ss_pred ccCCCCCCcccccC-CCeeeecCC-----hhHHHHHHHHHHHHHHHHHhcc
Q 037925 100 EWNYGGFPVWLHFI-PGIQFRTTN-----NPFKEEMKRFLAKIIDLMKQEN 144 (821)
Q Consensus 100 Ew~~GG~P~WL~~~-p~~~~R~~d-----p~y~~~~~~~~~~l~~~l~~~~ 144 (821)
+. -|.|-.+. .|-..|..+ .+|.+++.+|.-.|+..+++..
T Consensus 91 ~~----~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 91 EA----HPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hh----ChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 11 35555421 111122111 2488999999999999999554
No 70
>PRK14705 glycogen branching enzyme; Provisional
Probab=81.54 E-value=21 Score=46.71 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=39.0
Q ss_pred HHHHHHHcCCCEEEE-cee-------cCccC--CcCceeeecCcchHHHHHHHHHHcCceEEEec
Q 037925 39 LIRKSKEGGLEVIET-YVF-------WNYHE--PIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 39 ~l~k~ka~G~N~V~~-yv~-------Wn~hE--p~~G~~df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.|.-+|++|+|+|+. .|+ |.+.- ...=.=.|.+..||.+|++.|+++||.|||--
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999998 453 43210 00001134556799999999999999999873
No 71
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=81.27 E-value=2.5 Score=47.80 Aligned_cols=70 Identities=23% Similarity=0.191 Sum_probs=46.9
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecCccc
Q 037925 22 QSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYA 97 (821)
Q Consensus 22 ~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYi 97 (821)
++=|+++...+.+..+..|++|+++|+..| |=++|.|+...=+.- ..+..++++|+++||.|++-..|=+
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~i----FTSL~ipe~~~~~~~--~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRI----FTSLHIPEDDPEDYL--ERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEE----EEEE---------HH--HHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEE----ECCCCcCCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCHHH
Confidence 456777777788999999999999999765 557899986443322 3789999999999999999987643
No 72
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=81.01 E-value=1.5 Score=46.87 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCcCc--eee-------ecCcchHHHHHHHHHHcCceEEEec
Q 037925 37 PELIRKSKEGGLEVIETYVFWNYHEPIRG--QYY-------FEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 37 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~d-------f~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.+.|.-+|++|+|+|.+-=++.....--| .-| |.+..+|.++++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 35688899999999998644432211111 112 2345699999999999999999875
No 73
>PRK12313 glycogen branching enzyme; Provisional
Probab=80.54 E-value=2.8 Score=51.06 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEE-cee-------cCccCC--cCceeeecCcchHHHHHHHHHHcCceEEEec
Q 037925 40 IRKSKEGGLEVIET-YVF-------WNYHEP--IRGQYYFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 40 l~k~ka~G~N~V~~-yv~-------Wn~hEp--~~G~~df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
|.-+|++|+|+|.. .|+ |.+.-- ..=.-.|.+..||.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58889999999996 553 321110 0001135566799999999999999999974
No 74
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.28 E-value=12 Score=40.19 Aligned_cols=126 Identities=19% Similarity=0.277 Sum_probs=75.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEE-EecCcccccccCCCCCCccccc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLH-LRIGPYACAEWNYGGFPVWLHF 112 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vi-lrpGPYicaEw~~GG~P~WL~~ 112 (821)
..|++.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|. +.++.. ..++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC-----
Confidence 36999999999999999999532 1111 01122333 2368899999999999875 332210 0011
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccccccccCCC-------cHHHHHHHHHHhH
Q 037925 113 IPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWAYGVG-------GELYVKWAADTAV 185 (821)
Q Consensus 113 ~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~-------~~~y~~~l~~~~~ 185 (821)
+-+.|+.-++...+.+++.+...+ .+ |.++|.+. |.. ..++.. -.+.++.|.++++
T Consensus 86 -----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~ 148 (283)
T PRK13209 86 -----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELAS 148 (283)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 123456666777777888878777 33 56776542 110 001111 1345677777787
Q ss_pred hcCCcc
Q 037925 186 NLNTSV 191 (821)
Q Consensus 186 ~~g~~v 191 (821)
+.|+.+
T Consensus 149 ~~GV~i 154 (283)
T PRK13209 149 RASVTL 154 (283)
T ss_pred HhCCEE
Confidence 778754
No 75
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=78.43 E-value=31 Score=36.46 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEE
Q 037925 35 VWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHL 91 (821)
Q Consensus 35 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vil 91 (821)
-+++.|++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999985422 13688899999999999764
No 76
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=77.59 E-value=33 Score=39.33 Aligned_cols=92 Identities=21% Similarity=0.205 Sum_probs=54.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeec-C--cchHHHHHHHHHHcCceEEE-ecCcccccccCCCCCC
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFE-G--RFDLVRFVKTVQEAGLFLHL-RIGPYACAEWNYGGFP 107 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~-g--~~dl~~fl~~a~~~gL~Vil-rpGPYicaEw~~GG~P 107 (821)
++....+++++++++|+..|+.. ..+ ..| |+.+ . ..++.++-++++++||.|.. -++-+-+ |
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~---~~d-l~P--~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~--------~ 95 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFH---DDD-LIP--FGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSH--------P 95 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEec---ccc-cCC--CCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCC--------c
Confidence 34567799999999999999863 111 011 1111 0 23578899999999999663 3321111 1
Q ss_pred cccccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 108 VWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 108 ~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
.|.. + -+-+.|+..+++.-+++++.+..-+
T Consensus 96 ~~~~---g-~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 96 VFKD---G-GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred cccC---C-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1211 1 2345577777766666676666666
No 77
>PLN02960 alpha-amylase
Probab=76.54 E-value=4.6 Score=50.39 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCCEEEE-cee-------cCccCC--cCceeeecCcchHHHHHHHHHHcCceEEEec
Q 037925 38 ELIRKSKEGGLEVIET-YVF-------WNYHEP--IRGQYYFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 38 ~~l~k~ka~G~N~V~~-yv~-------Wn~hEp--~~G~~df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
+.|.-+|++|+|+|+. .|+ |.+.-- ..=.-.|....+|.+|++.|+++||.|||-.
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4688999999999998 454 432210 0001124456799999999999999999985
No 78
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=76.37 E-value=4 Score=49.44 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCCEEEE-cee---------------cCccC-----CcCceee----ec--CcchHHHHHHHHHHcCceEE
Q 037925 38 ELIRKSKEGGLEVIET-YVF---------------WNYHE-----PIRGQYY----FE--GRFDLVRFVKTVQEAGLFLH 90 (821)
Q Consensus 38 ~~l~k~ka~G~N~V~~-yv~---------------Wn~hE-----p~~G~~d----f~--g~~dl~~fl~~a~~~gL~Vi 90 (821)
+.|.-+|++|+|+|+. +|+ |.+.- |++ .|- |- ...+|.+|++.|++.||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999988 454 33321 110 110 11 12689999999999999999
Q ss_pred Eec
Q 037925 91 LRI 93 (821)
Q Consensus 91 lrp 93 (821)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 984
No 79
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=76.36 E-value=5.3 Score=43.98 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=51.6
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceecCccCCc-CceeeecCcc--hHHHHHHHHHHcCceEEEecCccccc
Q 037925 31 STPEVWPELIRKSKEGGLEVIETYVFWNYHEPI-RGQYYFEGRF--DLVRFVKTVQEAGLFLHLRIGPYACA 99 (821)
Q Consensus 31 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~--dl~~fl~~a~~~gL~VilrpGPYica 99 (821)
...+..++.++++|+.||..=.+.+-..++... -+.|.|.-.+ |..++++..++.|++|++..=|+|+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 366778999999999997776555554444332 2466665432 89999999999999999998888753
No 80
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=76.08 E-value=33 Score=36.70 Aligned_cols=131 Identities=14% Similarity=0.106 Sum_probs=71.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccccC
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFI 113 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~ 113 (821)
..|++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|.. .+|. .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~-- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM-- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc--
Confidence 359999999999999999983211 011111 122 24788999999999999753 2221 123443322
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc-cc-ccccccCCCcHHHHHHHHHHhHhcCCcc
Q 037925 114 PGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENE-YG-NVEWAYGVGGELYVKWAADTAVNLNTSV 191 (821)
Q Consensus 114 p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~g~~v 191 (821)
..++.-+++..+.+++.+..-+ .+ |.+.|.+-.-.. +. .....+. .-.+.++.|.+.+.+.|+.+
T Consensus 79 ------~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 ------LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHAGYLTPPNVIWG-RLAENLSELCEYAENIGMDL 145 (275)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHcCCEE
Confidence 1234455555556666666555 22 455554421110 00 0000010 12346777888888877754
No 81
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=74.77 E-value=4.3 Score=48.52 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHcCCCEEEE-ceecCc---cCCcCce-e----eecCcchHHHHHHHHHHcCceEEEec
Q 037925 35 VWPELIRKSKEGGLEVIET-YVFWNY---HEPIRGQ-Y----YFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 35 ~W~~~l~k~ka~G~N~V~~-yv~Wn~---hEp~~G~-~----df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
-+.++|.-+|++|+|+|-+ .++=+- |--.+.. | .|.+..||.+|++.|+++||+|||-.
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3667888999999999987 454321 1001111 1 14455799999999999999999874
No 82
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=74.26 E-value=10 Score=49.58 Aligned_cols=113 Identities=17% Similarity=0.239 Sum_probs=66.6
Q ss_pred eEEECCEEeEEEE---EEeeCCCC--CcccHHHHHHHHHHcCCCEEEE-cee-cC---ccCCcCceee----e----cCc
Q 037925 11 ALVIDGKRRVLQS---GSIHYPRS--TPEVWPELIRKSKEGGLEVIET-YVF-WN---YHEPIRGQYY----F----EGR 72 (821)
Q Consensus 11 ~~~~dG~p~~~~s---G~~Hy~R~--~~~~W~~~l~k~ka~G~N~V~~-yv~-Wn---~hEp~~G~~d----f----~g~ 72 (821)
.+.|+|+.++.+. =+-...++ +-+.|++.|..+|++|+|+|-. .++ =. ..=-..+.+. | .|.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 3555663333322 23334454 4477999999999999999976 444 11 0000112221 3 356
Q ss_pred chHHHHHHHHHHc-CceEEEecCcccccccCCCC-CCcccccCCCeeeecCChhHHHHH
Q 037925 73 FDLVRFVKTVQEA-GLFLHLRIGPYACAEWNYGG-FPVWLHFIPGIQFRTTNNPFKEEM 129 (821)
Q Consensus 73 ~dl~~fl~~a~~~-gL~VilrpGPYicaEw~~GG-~P~WL~~~p~~~~R~~dp~y~~~~ 129 (821)
.|+.++++.|++. ||++|+-.= |+-=+ ==.||..+|+.-....+.+||+++
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDvV------~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDIV------FNHTANNSPWLLEHPEAAYNCITSPHLRPA 236 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEee------ecccccCCHHHHhChHhhcCCCCCchhhhH
Confidence 7999999999986 999998731 11111 125787777654555555555444
No 83
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.25 E-value=21 Score=41.30 Aligned_cols=122 Identities=17% Similarity=0.269 Sum_probs=78.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEce-------------ecCccCCcCceee-ecCcchHHHHHHHHHHcCceEEEecCccc
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYV-------------FWNYHEPIRGQYY-FEGRFDLVRFVKTVQEAGLFLHLRIGPYA 97 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv-------------~Wn~hEp~~G~~d-f~g~~dl~~fl~~a~~~gL~VilrpGPYi 97 (821)
.+..-.+.|.+++++|+|||-.=| +|..-. ||.+- =.|..-|...|++|+|.||.|+-+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 566677899999999999996433 133322 55442 23455788889999999999999988887
Q ss_pred ccccCCCC---CCccccc-CCCeee-ecCC---h----hHHHHHHHHHHHHH-HHHHhccccccCCCceEEeccccccc
Q 037925 98 CAEWNYGG---FPVWLHF-IPGIQF-RTTN---N----PFKEEMKRFLAKII-DLMKQENLFASQGGPIILAQVENEYG 163 (821)
Q Consensus 98 caEw~~GG---~P~WL~~-~p~~~~-R~~d---p----~y~~~~~~~~~~l~-~~l~~~~~~~~~gGpII~~QiENEyg 163 (821)
.|=-..-. -|.|+.. .|+... |... - +..-+|+.|+..+. +.+++| .|=++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 65422221 3778775 355433 3332 1 23456777766655 455533 567889876655
No 84
>PRK09505 malS alpha-amylase; Reviewed
Probab=73.20 E-value=5.9 Score=48.62 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCEEEE-ceecCccCCc----Cc------------------eeeecCcchHHHHHHHHHHcCceEEEe
Q 037925 36 WPELIRKSKEGGLEVIET-YVFWNYHEPI----RG------------------QYYFEGRFDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 36 W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~----~G------------------~~df~g~~dl~~fl~~a~~~gL~Vilr 92 (821)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....||+++++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567788899999999986 5654443221 11 112445679999999999999999998
Q ss_pred c
Q 037925 93 I 93 (821)
Q Consensus 93 p 93 (821)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 85
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=72.86 E-value=3.6 Score=41.62 Aligned_cols=64 Identities=30% Similarity=0.385 Sum_probs=30.5
Q ss_pred CCceEEEEECCeeeeeecccccCCCCCCCccccCCCCcCccccccCCCCCceEEeecCCcccccCCceeEEEEecCC
Q 037925 620 SMGKGQAWVNGQSIGRYWSAYLAPSTGCTKKCDYRGSYDASKCQKHCGQPAQTLYHIPRTWVHPGENLLVIHEELGG 696 (821)
Q Consensus 620 g~gKG~vwVNG~nlGRYW~~~~~~~~G~~~~~~~~g~~~~~~~~~~~g~PQqtlYhVP~~~Lk~g~N~lvvfE~~g~ 696 (821)
.-++=+|.||| ..+..+... .| .+.|.+|++ +-.|..+.--|.||+.+|++|.|+|.|--..|.
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~----~~-~d~~~~r~g-------~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~gs 154 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAP----FG-NDNAIYRSG-------IHRGNYRLYEFDIPASLLKAGENTITLTVPSGS 154 (167)
T ss_dssp TT-EEEEEETT-EE----------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S-
T ss_pred CCCCEEEEEcC-ccCCccccc----cC-CCCceeeCc-------eecccEEEEEEEEcHHHEEeccEEEEEEEccCC
Confidence 34777999999 777766311 12 134555543 233456666778999999999999977554443
No 86
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=72.72 E-value=51 Score=39.71 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=50.2
Q ss_pred cccHHHHHHHHHHcCCCEEEEc-eecCccCCcCcee--------eecCc----chHHHHHHHHHHcCceEEEecCccccc
Q 037925 33 PEVWPELIRKSKEGGLEVIETY-VFWNYHEPIRGQY--------YFEGR----FDLVRFVKTVQEAGLFLHLRIGPYACA 99 (821)
Q Consensus 33 ~~~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~~--------df~g~----~dl~~fl~~a~~~gL~VilrpGPYica 99 (821)
++.=++.|..|+...||.|+.| ..|.+|.|-|+.= |+.++ .-+...|+.|++.|+.++.=--=|-+-
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 3566789999999999999999 8899999976533 23333 368899999999999988654333222
Q ss_pred cc--CCCCCCccccc
Q 037925 100 EW--NYGGFPVWLHF 112 (821)
Q Consensus 100 Ew--~~GG~P~WL~~ 112 (821)
+. ..|=.|.|-+-
T Consensus 197 ~~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 197 NNYEEDGVSPEWGLY 211 (559)
T ss_dssp TT--S--SS-GGBEE
T ss_pred cCcccccCCchhhhh
Confidence 32 35667889863
No 87
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=72.13 E-value=8.2 Score=38.40 Aligned_cols=67 Identities=19% Similarity=0.084 Sum_probs=36.4
Q ss_pred EeeecCCCCCC--ccCCcCCc--ccccC--cHHHHHhhcCCCCCcEEEec----CCCCCCCCCCCC--CcceEEEEEEEe
Q 037925 752 INFASYGIPEG--NCGSFRPG--ACHMD--VLPIVQKACVGQIECSIPVS----SAYLGVSAGACP--GLLKALAVEAHC 819 (821)
Q Consensus 752 I~~A~yGr~~~--~C~~~~~~--~C~~~--s~~~v~~~C~Gk~~C~v~a~----~~~Fg~~~DPC~--gt~KyL~v~y~C 819 (821)
|..|-||.... .+.+.... .+..+ .--+|.=.|+=+.|+-.-.. ..+.|.- |||| |..|.|.|.|..
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVTipLq~lV~dS~L~l~~~~sKs~L~GF~-DP~p~~ge~K~L~V~Y~f 133 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVTIPLQALVKDSQLILPEGVSKSGLPGFY-DPCPFLGEPKQLRVRYRF 133 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEhhhhhhEeecCEEEEcCCCchhhCCCCC-CCccccCCccEEEEEEEE
Confidence 78899999432 33211110 11111 11123334555566543332 2333442 9999 999999999986
No 88
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=71.82 E-value=50 Score=35.31 Aligned_cols=92 Identities=13% Similarity=0.172 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCCCEEEEceecCccCCcCcee-eecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccccCC
Q 037925 36 WPELIRKSKEGGLEVIETYVFWNYHEPIRGQY-YFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIP 114 (821)
Q Consensus 36 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~-df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p 114 (821)
-++.|+++.++|++.|+.. ..+|..-.- +++ ..+++++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 3478999999999999984 333322110 222 236899999999999986542 3431
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 037925 115 GIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQ 157 (821)
Q Consensus 115 ~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 157 (821)
+.+.+.|+..+++..+++++.+...+ .+ |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12456678888888888888888777 33 55666554
No 89
>PRK10785 maltodextrin glucosidase; Provisional
Probab=71.30 E-value=7.3 Score=47.19 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEE-ceecC--ccCCcCcee-----eecCcchHHHHHHHHHHcCceEEEec
Q 037925 37 PELIRKSKEGGLEVIET-YVFWN--YHEPIRGQY-----YFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 37 ~~~l~k~ka~G~N~V~~-yv~Wn--~hEp~~G~~-----df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.+.|.-+|++|+|+|-. +||=+ .|--....| .|.+..||.+|++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45788889999999988 56632 121111111 24456799999999999999999864
No 90
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=71.16 E-value=14 Score=30.81 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=43.7
Q ss_pred cccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEE
Q 037925 33 PEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHL 91 (821)
Q Consensus 33 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vil 91 (821)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4566788899999999999999832 333 58887765 5778999999999988764
No 91
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=70.63 E-value=7.7 Score=46.53 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCCEEEE-ceecCccCCcC-cee----------eecCcchHHHHHHHHHHcCceEEEec
Q 037925 36 WPELIRKSKEGGLEVIET-YVFWNYHEPIR-GQY----------YFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 36 W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~-G~~----------df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
+.++|..+|++|+++|-+ .|+-. |.. .-| +|....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 557889999999999987 45421 221 112 23455799999999999999999874
No 92
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=70.59 E-value=7.8 Score=46.27 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHcCCCEEEE-ceecCccCCc-Ccee----------eecCcchHHHHHHHHHHcCceEEEe
Q 037925 35 VWPELIRKSKEGGLEVIET-YVFWNYHEPI-RGQY----------YFEGRFDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 35 ~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~-~G~~----------df~g~~dl~~fl~~a~~~gL~Vilr 92 (821)
-+.+.|.-+|++|+|+|-. .|+ .. +. ..-| .|.+..|+.++++.|++.||+|||-
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~-~~--~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFF-QS--PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCc-CC--CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3667899999999999987 444 10 11 1111 2345579999999999999999986
No 93
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=70.58 E-value=8.5 Score=34.32 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=35.2
Q ss_pred ceeEEeCCcceEEEEEECCEEEEEEEcccCcceeEEeeeecc-cCCccEEEEEEeccCcc
Q 037925 471 EVFLNIESLGHAALVFVNKKLVAFGYGNHDFANFLINKKIEL-NEGINTLDILSMMVGLQ 529 (821)
Q Consensus 471 ~~~L~v~~~~D~a~VfVng~~~G~~~~~~~~~~~~~~~~i~l-~~g~~~L~ILven~Gr~ 529 (821)
...|++.+-...++-||||+++|.....+ .+.+ .+ ..|.++|++ ++..|+.
T Consensus 33 ~l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 33 PLVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred eEEEEEeCCCCcEEEEECCEEcccCCCCC---eEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 45666655566999999999998765432 2323 34 678899988 6777754
No 94
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=69.89 E-value=16 Score=44.83 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=66.7
Q ss_pred ccHHHHHHHHHHcCCCEEEE---------------ceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecCcccc
Q 037925 34 EVWPELIRKSKEGGLEVIET---------------YVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYAC 98 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~---------------yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYic 98 (821)
+.-...|+.+|++|+|||-. |.+| -|= ||+-|.= | .-...++.+.|+.|..+-.||--
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~l--p~r~d~f---~-~~aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLL--PMRADLF---N-RVAWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccc--ccccCCc---C-HHHHHHHHhhCCEEEEeccceee
Confidence 45677899999999999954 4456 333 3333311 1 11345589999999999999852
Q ss_pred c---------ccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc
Q 037925 99 A---------EWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENE 161 (821)
Q Consensus 99 a---------Ew~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 161 (821)
. +++..+-|+... |+-..| - .+|..+|++|++.|..-|+.+ .+|=++|..-+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r-l-~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd 467 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR-L-SPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDD 467 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC-C-CCCCHHHHHHHHHHHHHHHHh-------CCCceEEeccc
Confidence 1 222122222111 110122 1 236788999999999999954 25666676554
No 95
>PRK09989 hypothetical protein; Provisional
Probab=69.87 E-value=37 Score=36.16 Aligned_cols=43 Identities=16% Similarity=0.369 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEE
Q 037925 35 VWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHL 91 (821)
Q Consensus 35 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vil 91 (821)
-.+++|++++++|+..|++..+|. .+.+.+.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 478999999999999999854332 2467788889999999774
No 96
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=69.49 E-value=63 Score=34.38 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=38.1
Q ss_pred EeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEE
Q 037925 25 SIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHL 91 (821)
Q Consensus 25 ~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vil 91 (821)
++.|-+.+ ++++|++++++|++.|++.. | + ..+++++.++++++||.|..
T Consensus 9 ~~~~~~~~---l~~~l~~~a~~Gf~~VEl~~------~----~----~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 9 SMLFGEYD---FLARFEKAAQCGFRGVEFMF------P----Y----DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred ehhccCCC---HHHHHHHHHHhCCCEEEEcC------C----C----CCCHHHHHHHHHHcCCcEEE
Confidence 34444443 78899999999999999831 1 1 14799999999999999854
No 97
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=68.61 E-value=1.4 Score=52.74 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=62.7
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcCCCCceEEecCCCCeEEEEeeecCCCCCCccCCcCCcccccC-cHHHHHhhc
Q 037925 706 KTGQHICSFVSEADPPPVDSWKPNLGVVSSSPQVRLACERGWHIAAINFASYGIPEGNCGSFRPGACHMD-VLPIVQKAC 784 (821)
Q Consensus 706 ~~~~~~c~~~~e~~~~~~~~~~~~~~~~~~~~~~~L~C~~g~~i~~I~~A~yGr~~~~C~~~~~~~C~~~-s~~~v~~~C 784 (821)
.+.+.+|.+-.++|..++ .++-=.|.++.++..|.+|.||..+++|+.|-.++|.++ +...+.+.|
T Consensus 308 ap~dgl~~~pk~ghlk~~-------------hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~ 374 (649)
T KOG0496|consen 308 APLDGLLRQPKYGHLKPL-------------HTSYDYCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPK 374 (649)
T ss_pred cccchhhcCCCccccccc-------------hhhhhhcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCc
Confidence 345567877777775221 222234667888888999999999999999999999999 888999999
Q ss_pred CCCCCcEEEecCCCC
Q 037925 785 VGQIECSIPVSSAYL 799 (821)
Q Consensus 785 ~Gk~~C~v~a~~~~F 799 (821)
..+..|+|..-.+.+
T Consensus 375 y~~~~~slsilpdck 389 (649)
T KOG0496|consen 375 YRLPPWSLSILPDCK 389 (649)
T ss_pred cccCceeEEechhhc
Confidence 999999998854433
No 98
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=67.72 E-value=9 Score=41.30 Aligned_cols=56 Identities=29% Similarity=0.377 Sum_probs=42.9
Q ss_pred CchhhhcCC---CCCCccEEEEEEEEecCCCC----CcceeEEeCCcceEEEEEECCEEEEEE
Q 037925 440 PDLAEQINT---TKDTSDYLWYTASIHVMPGQ----GKEVFLNIESLGHAALVFVNKKLVAFG 495 (821)
Q Consensus 440 p~~~Eql~~---t~d~~Gyl~Y~t~v~~~~~~----~~~~~L~v~~~~D~a~VfVng~~~G~~ 495 (821)
|.++-++++ -+|-+|.+||+.++.++.+. ++...|++.+++-.|.|+|||.-+=..
T Consensus 71 pss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h 133 (297)
T KOG2024|consen 71 PSSFNDIGQDWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEH 133 (297)
T ss_pred ccchhccccCCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeeccc
Confidence 444566655 34678999999999886543 567899999999999999998765443
No 99
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=66.68 E-value=17 Score=39.21 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=51.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCCcCcee--eecCc--chHHHHHHHHHHcCceEEEecCccc
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQY--YFEGR--FDLVRFVKTVQEAGLFLHLRIGPYA 97 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~--df~g~--~dl~~fl~~a~~~gL~VilrpGPYi 97 (821)
..+..++.++++++.||-.=.+.+-+.+++. -+.| +|.-. -|..++++.+++.|++|+|..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6677889999999999997777766665554 4566 55432 3899999999999999999998887
No 100
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=64.97 E-value=25 Score=40.28 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=42.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEec
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
..+.|+++|+.+|++||+....=+- ....+.. .-|...++.|++.|++++|-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 7889999999999999999888664 2222322 378888999999999999986
No 101
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=63.45 E-value=22 Score=38.93 Aligned_cols=108 Identities=11% Similarity=0.191 Sum_probs=71.5
Q ss_pred EEEEEEeeCCCCCcc-cHH---HHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecCc
Q 037925 20 VLQSGSIHYPRSTPE-VWP---ELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGP 95 (821)
Q Consensus 20 ~~~sG~~Hy~R~~~~-~W~---~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGP 95 (821)
+-+++..||..-+.. ..+ ++|++--++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 568888888764322 222 3444444699999988766 4444 7899999999997765555555
Q ss_pred ccc---------cccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 96 YAC---------AEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 96 Yic---------aEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
..+ +||..--+|.||.+.=. ....++....+..-.+..+++..|.
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 444 57887778999986110 1123345556677778888888887
No 102
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=63.44 E-value=13 Score=46.37 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=45.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEE-ceec----CccCCc---Cc--eeeecCcchHHHHHHHHHHcCceEEEecCc
Q 037925 32 TPEVWPELIRKSKEGGLEVIET-YVFW----NYHEPI---RG--QYYFEGRFDLVRFVKTVQEAGLFLHLRIGP 95 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~-yv~W----n~hEp~---~G--~~df~g~~dl~~fl~~a~~~gL~VilrpGP 95 (821)
+-+.|.+.|.-++++|+++|-+ .++= ..|--. .. .-.|.+..+|.+|++.|+++||.|||-.=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4456889999999999999976 3431 111110 00 113557789999999999999999998533
No 103
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=63.41 E-value=10 Score=40.72 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=39.1
Q ss_pred cccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecC
Q 037925 33 PEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIG 94 (821)
Q Consensus 33 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpG 94 (821)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|++|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 566788999999999999987 35666555 34778999999999999999987
No 104
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=62.74 E-value=10 Score=46.79 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCEEEE-ceecCccC---CcCc-----ee---e-------e---cCcchHHHHHHHHHHcCceEEEec
Q 037925 39 LIRKSKEGGLEVIET-YVFWNYHE---PIRG-----QY---Y-------F---EGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 39 ~l~k~ka~G~N~V~~-yv~Wn~hE---p~~G-----~~---d-------f---~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.|.-+|++|+|+|.. .|+=...+ ...| -| | | ....+|.+|++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999998 55511111 1111 01 1 1 124689999999999999999984
No 105
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=62.70 E-value=26 Score=41.51 Aligned_cols=149 Identities=17% Similarity=0.252 Sum_probs=94.1
Q ss_pred ceEEECCEEeEEEEEEeeCC-----CCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHH
Q 037925 10 RALVIDGKRRVLQSGSIHYP-----RSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQE 84 (821)
Q Consensus 10 ~~~~~dG~p~~~~sG~~Hy~-----R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~ 84 (821)
-.|.|+|.|.++-++..-+. |..-+.-+-.|+-++++|+|++++. . -|. ..-+.|-++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRVW---G-----GGv------YEsd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRVW---G-----GGV------YESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEEe---c-----Ccc------ccchhHHHHhhh
Confidence 45889999999998876552 3345556668999999999999973 2 122 345899999999
Q ss_pred cCceEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc--cccc
Q 037925 85 AGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQV--ENEY 162 (821)
Q Consensus 85 ~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi--ENEy 162 (821)
.||.|--.. =+.|| +=..|..|++.|+.=.+.=+.+|+.|| .||.+-= |||=
T Consensus 394 lGilVWQD~-MFACA------------------lYPt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACA------------------LYPTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhh------------------cccCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccHH
Confidence 999764221 12232 223477899999888888888888665 5665543 4542
Q ss_pred cccccccCC-------CcHHHH----HHHHHHhHhcCCccceeeccC
Q 037925 163 GNVEWAYGV-------GGELYV----KWAADTAVNLNTSVPWVMCQQ 198 (821)
Q Consensus 163 g~~~~~~~~-------~~~~y~----~~l~~~~~~~g~~vp~~~~~~ 198 (821)
.-....|+. .-+.|. +-++++.....-..|+++...
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 211111221 123333 335555555455678887654
No 106
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=62.61 E-value=13 Score=45.14 Aligned_cols=55 Identities=31% Similarity=0.396 Sum_probs=40.9
Q ss_pred ccHHHHHHHHHHcCCCEEEE-cee-------cCccCCcCcee------eecCcchHHHHHHHHHHcCceEEEe
Q 037925 34 EVWPELIRKSKEGGLEVIET-YVF-------WNYHEPIRGQY------YFEGRFDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G~~------df~g~~dl~~fl~~a~~~gL~Vilr 92 (821)
+.=.+.|--+|+||+++|+. .|. |.+- |.. .|....||.+||+.|+++||-|||-
T Consensus 165 e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq----~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 165 ELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQ----GTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCC----cceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 33355788899999999998 343 5432 222 2344579999999999999999997
No 107
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=62.23 E-value=26 Score=38.42 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCC--------cCceeeecCc--chHHHHHHHHHHcCceEEEecCcc
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEP--------IRGQYYFEGR--FDLVRFVKTVQEAGLFLHLRIGPY 96 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--------~~G~~df~g~--~dl~~fl~~a~~~gL~VilrpGPY 96 (821)
+.+.-++.++++|+.||-.=.+++=..+|.- .-+.|+|+-. -|..++++..++.|++|++..=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 5666788999999999987777665444432 2356777644 399999999999999999886443
No 108
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=61.59 E-value=45 Score=33.34 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHcCCCEEEEceecCccCCc------CceeeecCcchHHHHHHHHHHcCceEE-EecCcccccccCCCCCC
Q 037925 35 VWPELIRKSKEGGLEVIETYVFWNYHEPI------RGQYYFEGRFDLVRFVKTVQEAGLFLH-LRIGPYACAEWNYGGFP 107 (821)
Q Consensus 35 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~------~G~~df~g~~dl~~fl~~a~~~gL~Vi-lrpGPYicaEw~~GG~P 107 (821)
..++..+.++..|+..+....+-+...+. +.. .-.....+.+.+++|++.|...+ +.+|.
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~------------ 94 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR------------ 94 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT------------
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc------------
Confidence 45567778889999977765553333321 111 11123489999999999999854 55442
Q ss_pred cccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccccc
Q 037925 108 VWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNV 165 (821)
Q Consensus 108 ~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~ 165 (821)
|-.. .......-++.+.+.+++|+++.+++. |.+-+||..+..
T Consensus 95 -~~~~-----~~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 95 -YPSG-----PEDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp -ESSS-----TTSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred -cccc-----cCCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 1000 012223566777788889988888442 456789988764
No 109
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=61.23 E-value=4 Score=43.20 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEe
Q 037925 37 PELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 37 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vilr 92 (821)
-...+.+.++|.+.|.+.++|..-.+..-.+... ++.++.+.|++.||.|||.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5568889999999999999997766655444455 8999999999999999999
No 110
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=60.10 E-value=19 Score=30.55 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=24.4
Q ss_pred CcceEEEEEECCEEEEEEEcccCc--ceeEEeee
Q 037925 478 SLGHAALVFVNKKLVAFGYGNHDF--ANFLINKK 509 (821)
Q Consensus 478 ~~~D~a~VfVng~~~G~~~~~~~~--~~~~~~~~ 509 (821)
...|.|.||++++|+|+++++.+. .++.|+..
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~ 58 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMA 58 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEE
Confidence 468999999999999999987543 44555543
No 111
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=59.96 E-value=44 Score=36.87 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=47.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----cCcc-CC--cCceeeecCcchHHHHHHHHHHcCceEEEecCccccccc
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVF----WNYH-EP--IRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEW 101 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~h-Ep--~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw 101 (821)
+.++-++.|+.|...|+|.+..|+- +.-+ |- .+|.|.= .|+.++++.|++.|+.||--+--.-|+|+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~pGH~~~ 88 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQTLGHLEF 88 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCCHHHHHH
Confidence 4577889999999999999999864 3211 11 1233333 49999999999999999966543334443
No 112
>PLN02361 alpha-amylase
Probab=59.08 E-value=18 Score=41.63 Aligned_cols=57 Identities=7% Similarity=0.012 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCEEEEceecCc---cCCcCce-ee----ecCcchHHHHHHHHHHcCceEEEec
Q 037925 37 PELIRKSKEGGLEVIETYVFWNY---HEPIRGQ-YY----FEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 37 ~~~l~k~ka~G~N~V~~yv~Wn~---hEp~~G~-~d----f~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.+.|.-++++|+++|-+.=+..- |--.+.. |+ |....+|.++|+.|++.||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 34567789999999988544322 2112222 22 3455799999999999999999864
No 113
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=58.19 E-value=18 Score=42.65 Aligned_cols=113 Identities=14% Similarity=0.159 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHcCCCEEEEceecCccCCc---CceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccc
Q 037925 35 VWPELIRKSKEGGLEVIETYVFWNYHEPI---RGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLH 111 (821)
Q Consensus 35 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~---~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~ 111 (821)
.|+++++.||++|++.-+.-|-|.-.=|. .+.-+-.|..-...+|+...++||..++--= =| .+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLf-----Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLF-----HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe-----cC---CCCHHHH
Confidence 58899999999999999999999988885 3567888888889999999999999665421 13 4799998
Q ss_pred c-CCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 037925 112 F-IPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQ 157 (821)
Q Consensus 112 ~-~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 157 (821)
+ +.+-.-+..=..|+++++--|+++..++| .+..=|...|..++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 6 55533233335688999999999999999 55444555555554
No 114
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.06 E-value=21 Score=39.70 Aligned_cols=67 Identities=9% Similarity=0.131 Sum_probs=50.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCC-----cCceeeecCcc--hHHHHHHHHHHcCceEEEecCcccc
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEP-----IRGQYYFEGRF--DLVRFVKTVQEAGLFLHLRIGPYAC 98 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-----~~G~~df~g~~--dl~~fl~~a~~~gL~VilrpGPYic 98 (821)
..+..++.++++|+.||-.=.+.+-+.++.- .-|.|+|.-.+ |..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4566789999999999987666665444442 23567776433 8999999999999999999877764
No 115
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=57.68 E-value=24 Score=38.87 Aligned_cols=68 Identities=16% Similarity=0.302 Sum_probs=51.7
Q ss_pred CCCCcccHHHHHHHHHHcCCC--EEEEceecCccCCcCceeeecCc--chHHHHHHHHHHcCceEEEecCccccc
Q 037925 29 PRSTPEVWPELIRKSKEGGLE--VIETYVFWNYHEPIRGQYYFEGR--FDLVRFVKTVQEAGLFLHLRIGPYACA 99 (821)
Q Consensus 29 ~R~~~~~W~~~l~k~ka~G~N--~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~VilrpGPYica 99 (821)
..+..+.-++.++++++.||. +|.+=..|- ..-|.|.|.-. -|..++++..++.|+++++..=|||+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 456788889999999999975 444434452 34576766533 389999999999999999998888864
No 116
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=57.38 E-value=20 Score=39.89 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=50.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCCcCc--eeeecCcc--hHHHHHHHHHHcCceEEEecCcccc
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRG--QYYFEGRF--DLVRFVKTVQEAGLFLHLRIGPYAC 98 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~df~g~~--dl~~fl~~a~~~gL~VilrpGPYic 98 (821)
..+.-++.++++++.||-.=.+.+-|.... ..+ .|+|+-.+ |..+||+..++.|++|++..=|+|.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 556678899999999988766666665444 344 77777544 9999999999999999998766663
No 117
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=57.01 E-value=11 Score=31.85 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=25.1
Q ss_pred eEEeCCcceEEEEEECCEEEEEEEcccCcceeEEeeeecccCCccEEEE
Q 037925 473 FLNIESLGHAALVFVNKKLVAFGYGNHDFANFLINKKIELNEGINTLDI 521 (821)
Q Consensus 473 ~L~v~~~~D~a~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~~~L~I 521 (821)
.|.|.+.-..|.|||||+++|... ..+. .++.|.++|.|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v 41 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV 41 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE
Confidence 455665556789999999999431 1121 15677766665
No 118
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=56.42 E-value=1.1e+02 Score=35.41 Aligned_cols=89 Identities=21% Similarity=0.213 Sum_probs=57.6
Q ss_pred eCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcC----ceeeecCc---chHHHHHHHHHHcCceEEEecCccccc
Q 037925 27 HYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIR----GQYYFEGR---FDLVRFVKTVQEAGLFLHLRIGPYACA 99 (821)
Q Consensus 27 Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~df~g~---~dl~~fl~~a~~~gL~VilrpGPYica 99 (821)
+|+.+..+.-.+.+++++++|++.+.+=--|.-..... |.+-.+-. .-|..+.+.+++.||+.=|+..|-+.+
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 46667777788899999999998777665686542222 33322111 249999999999999999998887653
Q ss_pred ccC--CCCCCcccccCCC
Q 037925 100 EWN--YGGFPVWLHFIPG 115 (821)
Q Consensus 100 Ew~--~GG~P~WL~~~p~ 115 (821)
+=. +-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 211 2247999987654
No 119
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=56.37 E-value=20 Score=39.36 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=41.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceec---CccCCcCcee--------eecCcchHHHHHHHHHHcCceEEEec
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFW---NYHEPIRGQY--------YFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~W---n~hEp~~G~~--------df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.+..-..+++.+|..|+|++-+=+-= ++.=|....+ .| .|+.-||+.|+|.|||+|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f---~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKF---KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccc---cccHHHHHHHHhcCeEEEEEE
Confidence 45566788999999999998653321 1111212111 23 399999999999999999995
No 120
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=56.25 E-value=34 Score=36.61 Aligned_cols=52 Identities=15% Similarity=0.333 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecCc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGP 95 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGP 95 (821)
...++.|+..|+.||++|++ ..|..+++ ..+..++|+.++++||+|+--.|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 56677888999999999987 46666665 347889999999999999987773
No 121
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=56.18 E-value=21 Score=44.96 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=45.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-eecCccCCcCc------eee-------ecCcchHHHHHHHHHHcCceEEEecCcc
Q 037925 32 TPEVWPELIRKSKEGGLEVIETY-VFWNYHEPIRG------QYY-------FEGRFDLVRFVKTVQEAGLFLHLRIGPY 96 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G------~~d-------f~g~~dl~~fl~~a~~~gL~VilrpGPY 96 (821)
+-+-|.+.|.-++++|+|+|-.- ++ +..+| ..| |.+..+|.+|++.|+++||.|||-.=|-
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 44568999999999999999773 32 11122 112 3467899999999999999999986443
No 122
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=56.10 E-value=21 Score=40.18 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=56.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcc--hH--HHHHHHHHHcCceEEEecCcccc
Q 037925 26 IHYPRS---TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRF--DL--VRFVKTVQEAGLFLHLRIGPYAC 98 (821)
Q Consensus 26 ~Hy~R~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~--dl--~~fl~~a~~~gL~VilrpGPYic 98 (821)
+|..|. ..+.-++.++++++.||..=.+.+-+.++.. .+.|+|...+ |. .++++..++.|++|+|..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 5677889999999999987776665554443 4677776543 77 99999999999999999988887
Q ss_pred cc
Q 037925 99 AE 100 (821)
Q Consensus 99 aE 100 (821)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 123
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=55.94 E-value=15 Score=48.08 Aligned_cols=56 Identities=27% Similarity=0.408 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCEEEE-ceecCccCCc---Cc--e---e----------eec--CcchHHHHHHHHHHcCceEEEec
Q 037925 38 ELIRKSKEGGLEVIET-YVFWNYHEPI---RG--Q---Y----------YFE--GRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 38 ~~l~k~ka~G~N~V~~-yv~Wn~hEp~---~G--~---~----------df~--g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
+.|.-+|++|+|+|+. .|+=...|.. .| . | .|. +..+|.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 3466899999999998 5653322221 11 0 1 123 56799999999999999999974
No 124
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=55.19 E-value=20 Score=46.39 Aligned_cols=21 Identities=10% Similarity=0.355 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHcCceEEEec
Q 037925 73 FDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 73 ~dl~~fl~~a~~~gL~Vilrp 93 (821)
.+|.++|+.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999984
No 125
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=54.03 E-value=23 Score=39.72 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=55.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcc--hHHHHHHHHHHcCceEEEecCcccccc
Q 037925 26 IHYPRS---TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRF--DLVRFVKTVQEAGLFLHLRIGPYACAE 100 (821)
Q Consensus 26 ~Hy~R~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~--dl~~fl~~a~~~gL~VilrpGPYicaE 100 (821)
+|..|. ..+.-++.++++++.||..=.+.+-+.+. ...+.|+|+-.+ |..+|++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 344443 45667889999999999877766554432 355677776443 899999999999999999998888753
No 126
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=54.00 E-value=51 Score=37.04 Aligned_cols=72 Identities=11% Similarity=0.121 Sum_probs=57.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcc--hHHHHHHHHHHcCceEEEecCcccc
Q 037925 26 IHYPRS---TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRF--DLVRFVKTVQEAGLFLHLRIGPYAC 98 (821)
Q Consensus 26 ~Hy~R~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~--dl~~fl~~a~~~gL~VilrpGPYic 98 (821)
+|..|. ..+..++.++++++.+|-.=.+++=|.++. .-+.|.|...+ |..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 667788999999999998777777776664 34677776543 8899999999999999998889987
No 127
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=53.96 E-value=41 Score=36.61 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=58.2
Q ss_pred eEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeec--CcchHHHHHHHHHHcCc
Q 037925 11 ALVIDGKRRVLQSGSIHYPRS-TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFE--GRFDLVRFVKTVQEAGL 87 (821)
Q Consensus 11 ~~~~dG~p~~~~sG~~Hy~R~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~--g~~dl~~fl~~a~~~gL 87 (821)
.+.+.|.+++++.| +=-+ .++.-.+.-+++|++|+..+..|.+= |+=--+.|. |...+..+-+.+++.||
T Consensus 20 ~~~~g~~~~~~iaG---PCsie~~~~~~~~A~~lk~~g~~~~r~~~~k----pRTs~~s~~G~g~~gl~~l~~~~~~~Gl 92 (266)
T PRK13398 20 DVVIGGEEKIIIAG---PCAVESEEQMVKVAEKLKELGVHMLRGGAFK----PRTSPYSFQGLGEEGLKILKEVGDKYNL 92 (266)
T ss_pred CEEEcCCCEEEEEe---CCcCCCHHHHHHHHHHHHHcCCCEEEEeeec----CCCCCCccCCcHHHHHHHHHHHHHHcCC
Confidence 36666668888888 2222 57778888999999999999999875 332234565 56789999999999999
Q ss_pred eEEEec
Q 037925 88 FLHLRI 93 (821)
Q Consensus 88 ~Vilrp 93 (821)
.++-.|
T Consensus 93 ~~~te~ 98 (266)
T PRK13398 93 PVVTEV 98 (266)
T ss_pred CEEEee
Confidence 988775
No 128
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=53.16 E-value=1.1e+02 Score=34.19 Aligned_cols=62 Identities=16% Similarity=0.061 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----cCccCCc------Cceee--------ecCcchHHHHHHHHHHcCceEEEec
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVF----WNYHEPI------RGQYY--------FEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp~------~G~~d--------f~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
+.+..++.|+.|...++|+...++- |.+.-+. .|.+. |=-..|+..+++.|++.|+.||--+
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 7889999999999999999999885 6554321 22221 1013499999999999999999654
No 129
>PRK12677 xylose isomerase; Provisional
Probab=52.33 E-value=1.3e+02 Score=34.59 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeec---CcchHHHHHHHHHHcCceEE-EecCcccccccCCCCCCcc
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFE---GRFDLVRFVKTVQEAGLFLH-LRIGPYACAEWNYGGFPVW 109 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~---g~~dl~~fl~~a~~~gL~Vi-lrpGPYicaEw~~GG~P~W 109 (821)
-.+++.+++++++|+..|+.. .+..--|+.+ -.+.+.++.+++++.||.|. +-|.-|-+..+..|
T Consensus 31 ~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g----- 99 (384)
T PRK12677 31 LDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG----- 99 (384)
T ss_pred CCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC-----
Confidence 347899999999999999873 2111112222 11358999999999999976 44431111111111
Q ss_pred cccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 110 LHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 110 L~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
-+-+.|+.-++...+.+.+.+..-+
T Consensus 100 -------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 -------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred -------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2445677777777777777777666
No 130
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=51.55 E-value=27 Score=38.87 Aligned_cols=72 Identities=10% Similarity=0.145 Sum_probs=53.7
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCc--chHHHHHHHHHHcCceEEEecCcccc
Q 037925 26 IHYPRS---TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGR--FDLVRFVKTVQEAGLFLHLRIGPYAC 98 (821)
Q Consensus 26 ~Hy~R~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~VilrpGPYic 98 (821)
+|..|. ..+..++.++++++.+|-.=.+.+-+.+.. .-+.|+|+.. -|..+|++..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 344454 566778999999999988766665543333 3466777644 38999999999999999999877775
No 131
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=51.13 E-value=78 Score=36.28 Aligned_cols=139 Identities=16% Similarity=0.159 Sum_probs=71.6
Q ss_pred HHcCCCEEEEcee---cC------------cc---CCcCceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCC
Q 037925 44 KEGGLEVIETYVF---WN------------YH---EPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGG 105 (821)
Q Consensus 44 ka~G~N~V~~yv~---Wn------------~h---Ep~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG 105 (821)
|-+|||.++.-|- +. -- .+..|.|||+....=+.||+.|++.|...++-+ .=-
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecC
Confidence 5689999987765 22 12 245789999987777889999999999988764 223
Q ss_pred CCcccccCCCe----eeecC-ChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccccccccc----C-----C
Q 037925 106 FPVWLHFIPGI----QFRTT-NNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWAY----G-----V 171 (821)
Q Consensus 106 ~P~WL~~~p~~----~~R~~-dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~----~-----~ 171 (821)
.|.|+.+.... ...++ .+...++-..|+..++++++.+.+ +|=-+=-=||.... +.. | +
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI------~f~~IsP~NEP~~~-W~~~~QEG~~~~~~ 200 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGI------NFDYISPFNEPQWN-WAGGSQEGCHFTNE 200 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--------EEEEE--S-TTS--GG--SS-B----HH
T ss_pred CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCC------ccceeCCcCCCCCC-CCCCCcCCCCCCHH
Confidence 68888763211 00011 234556667788888888864432 33333444887632 111 1 1
Q ss_pred CcHHHHHHHHHHhHhcCCccceeeccC
Q 037925 172 GGELYVKWAADTAVNLNTSVPWVMCQQ 198 (821)
Q Consensus 172 ~~~~y~~~l~~~~~~~g~~vp~~~~~~ 198 (821)
...+.++.|...+++.|+..-+..|+.
T Consensus 201 e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 201 EQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCceEEecch
Confidence 235778889999999999876655543
No 132
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=50.83 E-value=4.1e+02 Score=29.92 Aligned_cols=240 Identities=13% Similarity=0.141 Sum_probs=104.1
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEE-------ceecCccCCcCceeeecCcch-HHHHHHHHHHcCceEEEecCccccccc
Q 037925 30 RSTPEVWPELIRKSKEGGLEVIET-------YVFWNYHEPIRGQYYFEGRFD-LVRFVKTVQEAGLFLHLRIGPYACAEW 101 (821)
Q Consensus 30 R~~~~~W~~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~df~g~~d-l~~fl~~a~~~gL~VilrpGPYicaEw 101 (821)
...++.| ++.+|++|+.-|-. +-.|.-....-..-+-...+| +..|.+.|+++||++-|=-.| ++|
T Consensus 90 ~fD~dqW---~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw 163 (346)
T PF01120_consen 90 KFDADQW---AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDW 163 (346)
T ss_dssp T--HHHH---HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSC
T ss_pred cCCHHHH---HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHh
Confidence 3455555 46789999986633 222655433222222222344 577999999999987774332 356
Q ss_pred CCCCCCccccc-CCCeeeecCChhHHHHHH-HHHHHHHHHHHhccccccCCCceEEecccccccccccccCCCcHHHHHH
Q 037925 102 NYGGFPVWLHF-IPGIQFRTTNNPFKEEMK-RFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWAYGVGGELYVKW 179 (821)
Q Consensus 102 ~~GG~P~WL~~-~p~~~~R~~dp~y~~~~~-~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~ 179 (821)
.....+.-... .+. .....+.+.+.+. .++.+|-+.+.+++. -+|=+-..... .....-...
T Consensus 164 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~------d~lWfDg~~~~--------~~~~~~~~~ 227 (346)
T PF01120_consen 164 HHPDYPPDEEGDENG--PADGPGNWQRYYNEYWLAQLRELLTRYKP------DILWFDGGWPD--------PDEDWDSAE 227 (346)
T ss_dssp CCTTTTSSCHCHHCC----HCCHHHHHHHHHHHHHHHHHHHHCSTE------SEEEEESTTSC--------CCTHHHHHH
T ss_pred cCcccCCCccCCccc--ccccchhhHhHhhhhhHHHHHHHHhCCCc------ceEEecCCCCc--------cccccCHHH
Confidence 54333322211 000 0112334444444 445555555553321 11211110000 112222366
Q ss_pred HHHHhHhcCCccceeeccCCCCCCcccccCCCccc-CCCCCC-CCCCCeEeeec-ccccccccCCCCCCCCHHHHHHHHH
Q 037925 180 AADTAVNLNTSVPWVMCQQEDAPDPIINTCNGFYC-DGFTPN-SPSKPIMWTEN-YSGWFLSFGYAVPFRPVEDLAFAVA 256 (821)
Q Consensus 180 l~~~~~~~g~~vp~~~~~~~~~~~~v~~~~ng~~~-~~~~~~-~~~~P~~~~E~-~~Gwf~~wg~~~~~~~~~~~~~~~~ 256 (821)
+.+++++..-++.+....+....... .+.. +...+. ....|.-...- -.+||=. -.....++++++...+.
T Consensus 228 ~~~~i~~~qp~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pwE~~~ti~~~W~y~-~~~~~~ks~~~li~~l~ 301 (346)
T PF01120_consen 228 LYNWIRKLQPDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPWETCTTIGPSWGYN-TPDEKYKSADELIDILV 301 (346)
T ss_dssp HHHHHHHHSTTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEEEEEEESSSSSS-C-GGGCGS--HHHHHHHHH
T ss_pred HHHHHHHhCCeEEEecccCCCCCccc-----cccchhccCCCCCCCCCccccCcCCCCCccc-CCCCCcCCHHHHHHHHH
Confidence 77777776655433222111110000 0000 111111 01112211111 2344320 12234568899999999
Q ss_pred HHHhcCCeeeeeeeeecCCCCCCCCCCCCccccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhc
Q 037925 257 RFFETGGTFQNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRELHKAIKLCEE 322 (821)
Q Consensus 257 ~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdAPL~E~G~~~tpKy~~lr~l~~~i~~~~~ 322 (821)
+..++|++++ + | -+.+.+|.+..+.-..||++.+.|+...+
T Consensus 302 ~~vs~ngnlL---L----------N------------igP~~dG~ip~~~~~~L~e~G~Wl~~nge 342 (346)
T PF01120_consen 302 DSVSRNGNLL---L----------N------------IGPDPDGTIPEEQVERLREIGDWLKVNGE 342 (346)
T ss_dssp HHHTBTEEEE---E----------E------------E---TTSS--HHHHHHHHHHHHHHHHHGG
T ss_pred HHhccCceEE---E----------e------------cCCCCCCCcCHHHHHHHHHHHHHHHhccc
Confidence 9999998752 1 1 12345677766778889999998875443
No 133
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=50.80 E-value=27 Score=47.05 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=45.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCCcCce---e----------eecCcchHHHHHHHHHHcCceEEEecCc
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQ---Y----------YFEGRFDLVRFVKTVQEAGLFLHLRIGP 95 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~---~----------df~g~~dl~~fl~~a~~~gL~VilrpGP 95 (821)
+-+-|.+.|.-+|++|+|+|-+-=++ +..+|. | .|.+..||.+|++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45669999999999999999774222 222221 1 2456789999999999999999998643
No 134
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=50.66 E-value=63 Score=34.48 Aligned_cols=96 Identities=14% Similarity=0.055 Sum_probs=55.7
Q ss_pred Cceeeec-CcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 037925 64 RGQYYFE-GRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQ 142 (821)
Q Consensus 64 ~G~~df~-g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~ 142 (821)
.|...+. +..++..+++.|++.|++|++..|= |..+. +. .+ ..++.- -+++.+.|...+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~----~~---~~~~~~---r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FT----AA---LNDPAK---RKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---ch----hh---hcCHHH---HHHHHHHHHHHHHH
Confidence 5666664 3457899999999999999999861 22111 11 01 123332 35688889998986
Q ss_pred ccccccCCCceEEecccccccccccccCCCcHHHHHHHHHHhHhcC
Q 037925 143 ENLFASQGGPIILAQVENEYGNVEWAYGVGGELYVKWAADTAVNLN 188 (821)
Q Consensus 143 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 188 (821)
+++ =++.|+=|+.... ...-..+++.|++.+.+.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 654 2456666765421 1111244555555554433
No 135
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=50.28 E-value=40 Score=34.53 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=55.9
Q ss_pred EEeeCCCCC-----cccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecC---cchHHHHHHHHHHcCceEEEecCc
Q 037925 24 GSIHYPRST-----PEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEG---RFDLVRFVKTVQEAGLFLHLRIGP 95 (821)
Q Consensus 24 G~~Hy~R~~-----~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g---~~dl~~fl~~a~~~gL~VilrpGP 95 (821)
|.+||+|.. .++.+.-|+.++..++.. ...|-..|..++.+.-+. ...+.+|++..+++|.++++-.++
T Consensus 56 G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~ 132 (196)
T cd06416 56 DVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQ 132 (196)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 889988653 566777888888765432 122445554444332111 136789999999999999999888
Q ss_pred ccccc----c---CCCCCCcccccCC
Q 037925 96 YACAE----W---NYGGFPVWLHFIP 114 (821)
Q Consensus 96 YicaE----w---~~GG~P~WL~~~p 114 (821)
+---. . +....|-|+..+.
T Consensus 133 ~~w~~~~~~~~~~~~~~ypLWiA~Y~ 158 (196)
T cd06416 133 YDWSQIFGSSYTCNFSSLPLWYAHYD 158 (196)
T ss_pred chhccccCCCcCCCcCCCceEecCCC
Confidence 62211 1 1456889997743
No 136
>PRK03705 glycogen debranching enzyme; Provisional
Probab=50.21 E-value=24 Score=43.28 Aligned_cols=55 Identities=25% Similarity=0.307 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCEEEE-ceecCccCCcC---c-----ee----------eecCc-----chHHHHHHHHHHcCceEEEec
Q 037925 39 LIRKSKEGGLEVIET-YVFWNYHEPIR---G-----QY----------YFEGR-----FDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 39 ~l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-----~~----------df~g~-----~dl~~fl~~a~~~gL~Vilrp 93 (821)
.|.-+|++|+|+|+. .|+=...++.. | -| .|... .+|.++++.|++.||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999987 45421111110 1 01 12221 479999999999999999974
No 137
>PLN00196 alpha-amylase; Provisional
Probab=50.10 E-value=32 Score=40.06 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCEEEEc-eecCc--cCCcCce-ee-----ecCcchHHHHHHHHHHcCceEEEec
Q 037925 37 PELIRKSKEGGLEVIETY-VFWNY--HEPIRGQ-YY-----FEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 37 ~~~l~k~ka~G~N~V~~y-v~Wn~--hEp~~G~-~d-----f~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.+.|.-+|++|+++|-+. ++=+. |--.+.. |+ |....+|+++++.|++.||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467788899999999885 43221 2222221 22 3344699999999999999999875
No 138
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=49.62 E-value=25 Score=40.63 Aligned_cols=69 Identities=13% Similarity=0.326 Sum_probs=48.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCc--chHHHHHHHHHHcCceEEEecCccccccc
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGR--FDLVRFVKTVQEAGLFLHLRIGPYACAEW 101 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~VilrpGPYicaEw 101 (821)
..+...+.++.+++.||-.=.+.+-..+.. ..+.|.|+.. -|...+++.+++.|++|++..-|+|.-+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 466678899999999998777766644433 5556666543 28999999999999999999888776444
No 139
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.31 E-value=38 Score=37.58 Aligned_cols=66 Identities=23% Similarity=0.210 Sum_probs=48.7
Q ss_pred cccHHHHHHHHHHcCCCEEEEceecCccCC---cCceeeecCc--chHHHHHHHHHHcCceEEEecCcccc
Q 037925 33 PEVWPELIRKSKEGGLEVIETYVFWNYHEP---IRGQYYFEGR--FDLVRFVKTVQEAGLFLHLRIGPYAC 98 (821)
Q Consensus 33 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~~df~g~--~dl~~fl~~a~~~gL~VilrpGPYic 98 (821)
.+.-++.++++++.||-+=.+.+-+.+..- ....|+|.-. -|..++++..++.|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 346678899999999987776665433322 1234666533 38999999999999999999888774
No 140
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=48.14 E-value=34 Score=38.37 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=53.5
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCc--chHHHHHHHHHHcCceEEEecCccccc
Q 037925 26 IHYPRS---TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGR--FDLVRFVKTVQEAGLFLHLRIGPYACA 99 (821)
Q Consensus 26 ~Hy~R~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~VilrpGPYica 99 (821)
+|..|. ..+..++.++++++.||-.=.+.+-+.+.. .-+.|+|.-. -|..++++..++.|++|++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455553 556678999999999998765555544443 3455766643 378999999999999999988787753
No 141
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=47.88 E-value=28 Score=44.08 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHcCceEEEec
Q 037925 73 FDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 73 ~dl~~fl~~a~~~gL~Vilrp 93 (821)
.+++++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999974
No 142
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=47.22 E-value=73 Score=33.50 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=65.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeec-CcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCccc
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFE-GRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWL 110 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~-g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL 110 (821)
.+.+++..++.++++|+.++.+|....- ....|..+ |..|=..-+++|+++|+ -+| -|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~g-----------s~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPG-----------TIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCC-----------CEEEE
Confidence 5789999999999999999999998866 23334443 77899999999999998 333 23333
Q ss_pred ccCCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 037925 111 HFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQE 143 (821)
Q Consensus 111 ~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~ 143 (821)
.-+.+ ..+..+...+..||+.+...|+..
T Consensus 112 avD~d----~~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFD----ALDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecC----CCcchhHHHHHHHHHHHHHHHHhc
Confidence 22222 122337788999999999999844
No 143
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=45.71 E-value=55 Score=36.88 Aligned_cols=76 Identities=25% Similarity=0.363 Sum_probs=58.2
Q ss_pred eEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecC--cchHHHHHHHHHHcCc
Q 037925 11 ALVIDGKRRVLQSGSIHYPRS-TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEG--RFDLVRFVKTVQEAGL 87 (821)
Q Consensus 11 ~~~~dG~p~~~~sG~~Hy~R~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl~~a~~~gL 87 (821)
.+.+.|.+++++.| +=-+ .++.-.+.-+.+|++|.+++..|+|= |+---|.|.| ..-|.-+.+.+++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 36677788888998 3333 56777788888999999999999984 5444477875 5667777778899999
Q ss_pred eEEEec
Q 037925 88 FLHLRI 93 (821)
Q Consensus 88 ~Vilrp 93 (821)
.++-.|
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 888775
No 144
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=44.77 E-value=33 Score=34.59 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=19.2
Q ss_pred EEeeCCCceEEEEECCeeeeeec
Q 037925 615 ALNLASMGKGQAWVNGQSIGRYW 637 (821)
Q Consensus 615 ~Ld~~g~gKG~vwVNG~nlGRYW 637 (821)
.|.+++.|+=.+||||+.+|+--
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGP 29 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE-
T ss_pred EEEEEeCeeEEEEECCEEeeCCc
Confidence 47778889999999999999853
No 145
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=44.28 E-value=85 Score=31.64 Aligned_cols=56 Identities=18% Similarity=-0.035 Sum_probs=31.4
Q ss_pred eeEEeCCcceEEEEEECCEEEEEEEc----c-cCcc--eeEEeeeecccCCccEEEEEEeccCc
Q 037925 472 VFLNIESLGHAALVFVNKKLVAFGYG----N-HDFA--NFLINKKIELNEGINTLDILSMMVGL 528 (821)
Q Consensus 472 ~~L~v~~~~D~a~VfVng~~~G~~~~----~-~~~~--~~~~~~~i~l~~g~~~L~ILven~Gr 528 (821)
..|.|.. ..+..+||||+.+|...- . .... -.++++.--|+.|.|+|.|++-+...
T Consensus 6 A~l~isa-~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISA-LGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEE-ESEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEe-CeeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 3555554 347789999999997541 1 1111 12444444588899999999976443
No 146
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=42.70 E-value=33 Score=39.05 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=54.1
Q ss_pred EeeCCC-CCcccHHHHHHHHHHc-CCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEe
Q 037925 25 SIHYPR-STPEVWPELIRKSKEG-GLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 25 ~~Hy~R-~~~~~W~~~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vilr 92 (821)
|+.|+- .|.+.|+-+|.-+.|+ -=||+.+-|- |=|.|--++|+-. .|.+.+++|+++|+-||--
T Consensus 173 EVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 173 EVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred eeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHHHHHHHhCCeEEeh
Confidence 444444 5888999999999987 7899988664 7888888999888 9999999999999998865
No 147
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=41.78 E-value=11 Score=33.16 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=28.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCc
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGL 87 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL 87 (821)
....|-.-||.+-. .||.|-.|||. +|++||++|.|--+
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTpv 58 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTPV 58 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-TT
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCCe
Confidence 45678888777654 48999999999 99999999988543
No 148
>PLN02877 alpha-amylase/limit dextrinase
Probab=41.63 E-value=45 Score=42.61 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHcCceEEEec
Q 037925 73 FDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 73 ~dl~~fl~~a~~~gL~Vilrp 93 (821)
++++++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999984
No 149
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.58 E-value=54 Score=36.86 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=51.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEce----------ecCccCCc---------CceeeecC-c--chHHHHHH
Q 037925 26 IHYPRS---TPEVWPELIRKSKEGGLEVIETYV----------FWNYHEPI---------RGQYYFEG-R--FDLVRFVK 80 (821)
Q Consensus 26 ~Hy~R~---~~~~W~~~l~k~ka~G~N~V~~yv----------~Wn~hEp~---------~G~~df~g-~--~dl~~fl~ 80 (821)
+|..|. ..+.-++.++++++.||..=.+++ .|+...-. =+.++|.. . -|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 555564 456678899999999998766655 35533221 13344432 1 28999999
Q ss_pred HHHHcCceEEEecCcccc
Q 037925 81 TVQEAGLFLHLRIGPYAC 98 (821)
Q Consensus 81 ~a~~~gL~VilrpGPYic 98 (821)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888875
No 150
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=41.46 E-value=2.6e+02 Score=30.18 Aligned_cols=97 Identities=25% Similarity=0.399 Sum_probs=65.3
Q ss_pred cccHHHHHHHHHHcCCCEEEEceecCccCCcC--ceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCccc
Q 037925 33 PEVWPELIRKSKEGGLEVIETYVFWNYHEPIR--GQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWL 110 (821)
Q Consensus 33 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~--G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL 110 (821)
.-.|+++|.-+|++||+-|++-| -|..+ -.-||+. .-...+.+.+++.|+ |. |-+| |
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSv----DEsDeRLaRLDWs~-~er~~l~~ai~etgv----~i-pSmC-----------l 75 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSV----DESDERLARLDWSK-EERLALVNAIQETGV----RI-PSMC-----------L 75 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEec----cchHHHHHhcCCCH-HHHHHHHHHHHHhCC----Cc-cchh-----------h
Confidence 35699999999999999999865 34433 3567762 245667888899998 32 3333 2
Q ss_pred ccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 037925 111 HFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQV 158 (821)
Q Consensus 111 ~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 158 (821)
..+...-+-|.|+.-++.....+.+-+..-. +| .|=-+|+
T Consensus 76 SaHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQL 115 (287)
T COG3623 76 SAHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQL 115 (287)
T ss_pred hhhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEee
Confidence 2222223568899998888888777666555 43 3556687
No 151
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=41.00 E-value=32 Score=39.89 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCEEEE-cee---cCccCCcCcee-----eecCcchHHHHHHHHHHcCceEEEec
Q 037925 38 ELIRKSKEGGLEVIET-YVF---WNYHEPIRGQY-----YFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 38 ~~l~k~ka~G~N~V~~-yv~---Wn~hEp~~G~~-----df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
+.|.-+|.+|+++|-+ .++ -..|--..-.| .|.+..|+.++++.|++.||+||+--
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888899999999955 333 11222111000 67788899999999999999999873
No 152
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=38.11 E-value=1.1e+02 Score=32.26 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=72.4
Q ss_pred cccHHHHHHHHHHcCCCE-EEE--ceecCccCC---cCc--eeeec-----------C--cchHHHHHHHHHHcCceEEE
Q 037925 33 PEVWPELIRKSKEGGLEV-IET--YVFWNYHEP---IRG--QYYFE-----------G--RFDLVRFVKTVQEAGLFLHL 91 (821)
Q Consensus 33 ~~~W~~~l~k~ka~G~N~-V~~--yv~Wn~hEp---~~G--~~df~-----------g--~~dl~~fl~~a~~~gL~Vil 91 (821)
++.-.+.++++|+.|+.+ |+| |++|...+. .=+ -+|+- | +..+.+.|+.+.+.|..|.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 455678899999999874 444 555522221 111 23332 2 23555667888889999999
Q ss_pred ecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccc-----------
Q 037925 92 RIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVEN----------- 160 (821)
Q Consensus 92 rpGPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN----------- 160 (821)
|. |. .|++ ++++.-++++.+|++.+. +. +|-...--+
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg~ 180 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLGK 180 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcCC
Confidence 95 11 3553 456666666666665431 11 221111111
Q ss_pred cccccccccCCCcHHHHHHHHHHhHhcCCccc
Q 037925 161 EYGNVEWAYGVGGELYVKWAADTAVNLNTSVP 192 (821)
Q Consensus 161 Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp 192 (821)
+|-.. ......++.|+++++++++.|+.+-
T Consensus 181 ~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 181 TWSMK--EVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred cCccC--CCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 22110 1224678999999999999998763
No 153
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=37.73 E-value=1e+02 Score=33.97 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=47.7
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEcee----cCccCC----------------cCceeeecCcchHHHHHHHHHHcCceEE
Q 037925 31 STPEVWPELIRKSKEGGLEVIETYVF----WNYHEP----------------IRGQYYFEGRFDLVRFVKTVQEAGLFLH 90 (821)
Q Consensus 31 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp----------------~~G~~df~g~~dl~~fl~~a~~~gL~Vi 90 (821)
.+.+..++.|+.|...++|++..++- |.+--+ ..|.|.-+ |+..+++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEE
Confidence 36788999999999999999999988 855422 12344444 99999999999999999
Q ss_pred Eec
Q 037925 91 LRI 93 (821)
Q Consensus 91 lrp 93 (821)
--+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 654
No 154
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=37.69 E-value=2e+02 Score=27.24 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=40.8
Q ss_pred EEEEEEEEecCCCCCcceeEEeCCcceEEEEEECCEEEEEEEcccC-----cceeEEeeeecccC-CccEEEEEEeccC
Q 037925 455 YLWYTASIHVMPGQGKEVFLNIESLGHAALVFVNKKLVAFGYGNHD-----FANFLINKKIELNE-GINTLDILSMMVG 527 (821)
Q Consensus 455 yl~Y~t~v~~~~~~~~~~~L~v~~~~D~a~VfVng~~~G~~~~~~~-----~~~~~~~~~i~l~~-g~~~L~ILven~G 527 (821)
.+.+++.|..+.+ ....+.+. ..|.+.+||||+.+-...+... .........+.|.+ +.+.|.|...+.+
T Consensus 47 ~~~~~G~~~~~~~--G~y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~ 122 (145)
T PF07691_consen 47 SVRWTGYFKPPET--GTYTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRG 122 (145)
T ss_dssp EEEEEEEEEESSS--EEEEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECS
T ss_pred EEEEEEEEecccC--ceEEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECC
Confidence 4568888876543 23444444 6789999999999977654321 00111222344554 4677877665544
No 155
>PLN03059 beta-galactosidase; Provisional
Probab=37.31 E-value=1.4e+02 Score=37.58 Aligned_cols=44 Identities=23% Similarity=0.404 Sum_probs=32.4
Q ss_pred CccceEEEEEEeCCCCCC------ceEEeeCCC-ceEEEEECCeeeeeecc
Q 037925 595 NKSLIWYKTTFLAPEGKG------PLALNLASM-GKGQAWVNGQSIGRYWS 638 (821)
Q Consensus 595 ~~~~~~Yr~~F~~p~~~d------p~~Ld~~g~-gKG~vwVNG~nlGRYW~ 638 (821)
..+..||+++|+++.... ...|.+.+. -+-+|||||+-+|.-+-
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~ 518 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYG 518 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEe
Confidence 346899999999865421 123777766 46899999999998763
No 156
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=36.73 E-value=49 Score=40.82 Aligned_cols=54 Identities=28% Similarity=0.375 Sum_probs=42.0
Q ss_pred HHHHHHcCCCEEEE-ceecCccCCcC---c-eeee----------------cC-----cchHHHHHHHHHHcCceEEEec
Q 037925 40 IRKSKEGGLEVIET-YVFWNYHEPIR---G-QYYF----------------EG-----RFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 40 l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-~~df----------------~g-----~~dl~~fl~~a~~~gL~Vilrp 93 (821)
|.-+|.+|+++|+. .|+.-..|+.. | .|.| +. .+.|+.+|+.++++||-|||-.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 88999999999998 78877777654 2 2222 22 2478899999999999999984
No 157
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=36.22 E-value=1e+02 Score=35.05 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEec
Q 037925 35 VWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 35 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.|..-|+++++.|++.|.-+...-+-....+. + -...+++.|+++||.|+.+.
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~--~----~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK--I----VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc--c----CCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999987765433222211111 2 24688999999999999774
No 158
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.56 E-value=1.7e+02 Score=31.29 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=57.1
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceecCccCCc-Cceee---e-cCcchHHHHHHHHHHcCceEEEecCcccccccCCCC
Q 037925 31 STPEVWPELIRKSKEGGLEVIETYVFWNYHEPI-RGQYY---F-EGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGG 105 (821)
Q Consensus 31 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~d---f-~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG 105 (821)
+.++.-+...+.+++.|+.++.+-. ..|.+. ++.-| . .....+.+.|++|++.|..+|.-+|
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~----------- 120 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG----------- 120 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC-----------
Confidence 3566666677778899998876421 122211 11100 0 0112578899999999999764321
Q ss_pred CCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccc
Q 037925 106 FPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYG 163 (821)
Q Consensus 106 ~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 163 (821)
.+.|.. ..++...+.....++.|++..+++ | |-+.|||-.+
T Consensus 121 ~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 YDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred cccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 121211 122344455556677777777743 3 4567888643
No 159
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=35.33 E-value=48 Score=35.76 Aligned_cols=77 Identities=9% Similarity=-0.023 Sum_probs=51.0
Q ss_pred EEecCCCCeEEEEeeecCCCCC---CccCC----c-CCcccccCcHHHHHhhcCCCCCcEEEecCCCCCCCCCCC-CCcc
Q 037925 740 RLACERGWHIAAINFASYGIPE---GNCGS----F-RPGACHMDVLPIVQKACVGQIECSIPVSSAYLGVSAGAC-PGLL 810 (821)
Q Consensus 740 ~L~C~~g~~i~~I~~A~yGr~~---~~C~~----~-~~~~C~~~s~~~v~~~C~Gk~~C~v~a~~~~Fg~~~DPC-~gt~ 810 (821)
...|+++..+ .+..+.+++.+ .+|.. . ..+.|....+..+...|.+++.|++..++.-|+ -+| ++-.
T Consensus 146 ~~~~~~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ct~~~~~~~~~---~~~~~~~~ 221 (265)
T KOG4729|consen 146 DPPRSEIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQCHAKEGCTLKSDGIKGH---CRHGHLHK 221 (265)
T ss_pred CCccCcccch-hhhcccccccccccccCCCCcccCCCCceeecccchhhhhcccccCCceeecCCcccc---ccccceeE
Confidence 3344444322 45555566632 35543 1 234454448888999999999999999998888 577 4556
Q ss_pred eEEEEEEEee
Q 037925 811 KALAVEAHCS 820 (821)
Q Consensus 811 KyL~v~y~C~ 820 (821)
+|+.|.+.|.
T Consensus 222 ~~~~~n~e~~ 231 (265)
T KOG4729|consen 222 VYVTVTEEIF 231 (265)
T ss_pred EEEEeccccc
Confidence 8999988874
No 160
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=34.65 E-value=56 Score=35.42 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCEEEEceecCc---cCCcCceeeecCcchHHHHHHHHHHcCceEEEe
Q 037925 37 PELIRKSKEGGLEVIETYVFWNY---HEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 37 ~~~l~k~ka~G~N~V~~yv~Wn~---hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vilr 92 (821)
++.+++||++|++.|...+- .. ++-.-+..+|+ +..+.++.++++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 56788999999999888755 21 11111223444 6667789999999986533
No 161
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=34.47 E-value=1.5e+02 Score=32.21 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=69.2
Q ss_pred eEEEEEEeeCCCCCccc-H---HHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCce--EEEe
Q 037925 19 RVLQSGSIHYPRSTPEV-W---PELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLF--LHLR 92 (821)
Q Consensus 19 ~~~~sG~~Hy~R~~~~~-W---~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~--Vilr 92 (821)
.+.+++..|+.+-|... - .++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+. |++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 47889999887643322 1 24566666889998888655 4444 789999999999766 4444
Q ss_pred cCcccc-------cccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 93 IGPYAC-------AEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 93 pGPYic-------aEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
.-|-.. ++|..-.+|.|+.+.=. +...+....+++.-++..+++..+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444332 23666678999876110 0112223456667777777777776
No 162
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=34.22 E-value=70 Score=35.53 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=43.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----cCccCC------cCc---------eeeecCcchHHHHHHHHHHcCceEEEe
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVF----WNYHEP------IRG---------QYYFEGRFDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G---------~~df~g~~dl~~fl~~a~~~gL~Vilr 92 (821)
+.+.-++.|+.|...++|++..++- |.+.-+ +.| .|.- .|+..+++.|++.|+.||--
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 6788899999999999999999986 544321 122 3333 49999999999999999965
Q ss_pred c
Q 037925 93 I 93 (821)
Q Consensus 93 p 93 (821)
+
T Consensus 93 i 93 (351)
T PF00728_consen 93 I 93 (351)
T ss_dssp E
T ss_pred c
Confidence 4
No 163
>PRK09267 flavodoxin FldA; Validated
Probab=33.03 E-value=2.9e+02 Score=27.25 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=48.2
Q ss_pred CCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEE
Q 037925 15 DGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLH 90 (821)
Q Consensus 15 dG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vi 90 (821)
..-..++++...|....++..|.+-|.+++...++-..+.+|= ......-.-.|. .-+..+-+++++.|..++
T Consensus 45 ~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 45 EAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred hhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 3456789999999878888999999998888777777777773 221110001121 235667777888896654
No 164
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=32.77 E-value=75 Score=28.27 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=25.0
Q ss_pred CCCceEEeccccc-cccccccc----CC-CcHHHHHHHHHHh---HhcCCccceee
Q 037925 149 QGGPIILAQVENE-YGNVEWAY----GV-GGELYVKWAADTA---VNLNTSVPWVM 195 (821)
Q Consensus 149 ~gGpII~~QiENE-yg~~~~~~----~~-~~~~y~~~l~~~~---~~~g~~vp~~~ 195 (821)
....|.+|+|=|| .++....+ +. ....|.+||++++ |+.+...|+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 3458999999999 66321111 11 2456677777665 45566777643
No 165
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=32.44 E-value=84 Score=35.33 Aligned_cols=72 Identities=24% Similarity=0.246 Sum_probs=55.9
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCce-eeecCcchHHHHHHHHHHcCceEEEecCcccccc
Q 037925 22 QSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQ-YYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAE 100 (821)
Q Consensus 22 ~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaE 100 (821)
++=|+.+.|.+.+.=...|++|...|+..|-| .+|.|++.. --|. -+..+++.|+++||+||+-.-|=|--|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45578888888888888999999999987654 667776652 2233 578889999999999999987765433
No 166
>PLN02784 alpha-amylase
Probab=32.32 E-value=85 Score=39.60 Aligned_cols=56 Identities=18% Similarity=0.086 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCcCc--eee-------ecCcchHHHHHHHHHHcCceEEEec
Q 037925 37 PELIRKSKEGGLEVIETYVFWNYHEPIRG--QYY-------FEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 37 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~d-------f~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.++|..++++|+++|-+.=+.....+ .| .+| |....+|.++|+.|+++||+||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45677889999999988644222211 12 122 2334699999999999999999874
No 167
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=32.16 E-value=45 Score=36.95 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCce--EE-Eec
Q 037925 35 VWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLF--LH-LRI 93 (821)
Q Consensus 35 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~--Vi-lrp 93 (821)
.|++.|.+++..|+ +|++.-+=-.+|..|+.| +|+.+.+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesY-----KdVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESY-----KDVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhh-----hhHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 678888889999999998 4889999999999996 44 776
No 168
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=32.14 E-value=2e+02 Score=32.11 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccccCCCee
Q 037925 38 ELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQ 117 (821)
Q Consensus 38 ~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~ 117 (821)
.++...++.|.+||-.--.= .=.||..+..+++++-||.+|...|+|.-+.|+ .|+...|
T Consensus 52 ~e~~~~~a~Gg~TIVD~T~~------------~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--- 111 (316)
T COG1735 52 AELKRLMARGGQTIVDATNI------------GIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--- 111 (316)
T ss_pred HHHHHHHHcCCCeEeeCCcc------------ccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC---
Confidence 35677778899998532210 113799999999999999999999999988885 6776533
Q ss_pred eecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccccccccCCCcHHHHHHHHHHhHhc-CCccceeec
Q 037925 118 FRTTNNPFKEEMKRFLAKIIDLMKQENLFASQGGPIILAQVENEYGNVEWAYGVGGELYVKWAADTAVNL-NTSVPWVMC 196 (821)
Q Consensus 118 ~R~~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~ 196 (821)
++.+...+...++ . .-.|+=|..=|=-|-|.+. .-.+.=.+-|+..++++ -.++|+.+-
T Consensus 112 -----------i~~~ae~~v~ei~--~---Gi~gT~ikAGiIk~~~~~~----~iTp~Eek~lrAaA~A~~~Tg~Pi~tH 171 (316)
T COG1735 112 -----------IEELAEFVVKEIE--E---GIAGTGIKAGIIKEAGGSP----AITPLEEKSLRAAARAHKETGAPISTH 171 (316)
T ss_pred -----------HHHHHHHHHHHHH--h---cccCCccccceeeeccCcc----cCCHHHHHHHHHHHHHhhhcCCCeEEe
Confidence 3445555555555 1 1113323322223444432 12333356666666664 456887765
Q ss_pred c
Q 037925 197 Q 197 (821)
Q Consensus 197 ~ 197 (821)
.
T Consensus 172 t 172 (316)
T COG1735 172 T 172 (316)
T ss_pred c
Confidence 4
No 169
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.77 E-value=98 Score=24.93 Aligned_cols=55 Identities=20% Similarity=0.333 Sum_probs=39.7
Q ss_pred cccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceE
Q 037925 33 PEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFL 89 (821)
Q Consensus 33 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~V 89 (821)
|..-.+.+.-+.+.|+|.+.++. +..+......+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 34456778889999999999986 3333334555666533 4889999999999765
No 170
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=30.41 E-value=98 Score=34.21 Aligned_cols=89 Identities=16% Similarity=0.269 Sum_probs=60.1
Q ss_pred HHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCce--EEEecCccc-------ccccCCCCCCcc
Q 037925 39 LIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLF--LHLRIGPYA-------CAEWNYGGFPVW 109 (821)
Q Consensus 39 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~--VilrpGPYi-------caEw~~GG~P~W 109 (821)
+|++-.++|.+.+-|-.| ||.+ .+.+|++.|++.|+. |+...-|-. -++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 455555788888877655 5555 899999999999954 555555532 167778889999
Q ss_pred cccCCCeeeecCC-hhHHHHHHHHHHHHHHHHHh
Q 037925 110 LHFIPGIQFRTTN-NPFKEEMKRFLAKIIDLMKQ 142 (821)
Q Consensus 110 L~~~p~~~~R~~d-p~y~~~~~~~~~~l~~~l~~ 142 (821)
|.+.=. +. .+| ...+++.-++..+++..|.+
T Consensus 235 l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 235 MAKMFD-GL-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 986211 11 233 34566777788888888773
No 171
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=30.34 E-value=1.9e+02 Score=29.66 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=57.3
Q ss_pred CCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCC--------------------cCc---eeeecC
Q 037925 15 DGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEP--------------------IRG---QYYFEG 71 (821)
Q Consensus 15 dG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--------------------~~G---~~df~g 71 (821)
+|..|.++-..-=-..+.+ ++...++.+|++|+ .|-.|.|...... .++ .+|++.
T Consensus 20 ~g~~fviiKateG~~~~d~-~~~~n~~~A~~aGl-~vG~Yhf~~~~~~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~ 97 (196)
T cd06415 20 AGAKFAIVKISEGTNYVNP-KASAQVSSAIANGK-MTGGYHFARFGGSVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQ 97 (196)
T ss_pred CCCcEEEEEEcCCCccCCc-cHHHHHHHHHHCCC-eeEEEEEEecCCCHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEec
Confidence 4556666654322222333 67777778888887 6677777532210 011 346653
Q ss_pred c---------chHHHHHHHHHHcCceEEEecCcccccccCC-----C--CCCcccccCCC
Q 037925 72 R---------FDLVRFVKTVQEAGLFLHLRIGPYACAEWNY-----G--GFPVWLHFIPG 115 (821)
Q Consensus 72 ~---------~dl~~fl~~a~~~gL~VilrpGPYicaEw~~-----G--G~P~WL~~~p~ 115 (821)
. +.+.+|++.+++.|.+++|=.+++-....-. . ..|.||-+++.
T Consensus 98 ~~~~~~~~~~~~~~~f~~~v~~~G~~~~iYt~~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 157 (196)
T cd06415 98 GSGNSKAANTSAILAFMDTIKDAGYKPMLYSYKPLLLNNVDYSQIIAKYPNSLWVAAYPT 157 (196)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCcEEEecHHHHHhccCHHHHHhhCCCCeEEEcCCC
Confidence 2 3567899999888988887777654333211 1 13578877654
No 172
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.33 E-value=58 Score=34.75 Aligned_cols=55 Identities=13% Similarity=-0.036 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHcCCCEEEEceecCccCCc----CceeeecCcchHHHHHHHHHHcCceEEEec
Q 037925 35 VWPELIRKSKEGGLEVIETYVFWNYHEPI----RGQYYFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 35 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~----~G~~df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.+++.++.++++|..+|.+ |..+... +-.+.+. ...|.++.++|+++|+.+.+-|
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 5666788999999999955 3223211 1122221 1368999999999999999887
No 173
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=30.09 E-value=91 Score=35.19 Aligned_cols=108 Identities=17% Similarity=0.353 Sum_probs=0.0
Q ss_pred CEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccccCCCeeeec-CChhHHH
Q 037925 49 EVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRT-TNNPFKE 127 (821)
Q Consensus 49 N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~-~dp~y~~ 127 (821)
+.|.+.|.|+.+--+ --=...|+.|+++|++|+-- |.-||+ +-+.|+.. .+.. .+-.|
T Consensus 31 ~yvD~fvywsh~~~~---------iPp~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~----lL~~~~~~~~-- 89 (339)
T cd06547 31 QYVDTFVYFSHSAVT---------IPPADWINAAHRNGVPVLGT----FIFEWT--GQVEWLED----FLKKDEDGSF-- 89 (339)
T ss_pred hhhheeecccCcccc---------CCCcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHH----HhccCcccch--
Q ss_pred HHHHHHHHHHHHHHhccccccCCCceEEecccccc-cccccccCCCcHHHHHHHHHHhHhcCCccc
Q 037925 128 EMKRFLAKIIDLMKQENLFASQGGPIILAQVENEY-GNVEWAYGVGGELYVKWAADTAVNLNTSVP 192 (821)
Q Consensus 128 ~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy-g~~~~~~~~~~~~y~~~l~~~~~~~g~~vp 192 (821)
++.++|++..+.+.+ .| +.+-+||.. .. +....+..+++.+..+..-.+|
T Consensus 90 ---~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~------~~~~~l~~F~~~L~~~~~~~~~ 140 (339)
T cd06547 90 ---PVADKLVEVAKYYGF----DG--WLINIETELGDA------EKAKRLIAFLRYLKAKLHENVP 140 (339)
T ss_pred ---HHHHHHHHHHHHhCC----Cc--eEeeeeccCCcH------HHHHHHHHHHHHHHHHHhhcCC
No 174
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=29.94 E-value=97 Score=34.13 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=43.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCC--cCceeeecCcchHHHHHHHHHHcCceEEEec
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEP--IRGQYYFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--~~G~~df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.++..++.++.+++.|.+.|-+|.-+..--+ .++.-.++ ...+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4777899999999999999999975432111 11211122 2378899999999999887763
No 175
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=29.20 E-value=1.2e+02 Score=29.55 Aligned_cols=88 Identities=13% Similarity=0.189 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeec-----CcchHHHHHHHHHHcCceEEEecCcccccccCCCCC
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFE-----GRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGF 106 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~-----g~~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~ 106 (821)
.+.+.+..++.|+++|+..+.+|..... ...+|+ |..|=..-+..|+++|+. . |-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~-----~~~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt 95 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGR-----ETSDFTYGYAQGVADARDAVAAARALGFP----A-----------GT 95 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-------------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccc-----cccccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CC
Confidence 4688999999999999999999988722 223332 567889999999999983 2 23
Q ss_pred CcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 037925 107 PVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQE 143 (821)
Q Consensus 107 P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~ 143 (821)
|-++.-+ .-..+..+...+..||+.+...|...
T Consensus 96 ~IYfavD----~d~~~~~~~~~i~~Y~~g~~~~l~~~ 128 (136)
T PF08924_consen 96 PIYFAVD----YDATDAECDSAILPYFRGWNSALGAS 128 (136)
T ss_dssp EEEEE------TS-B-HH-------HHHHHHHHHGGG
T ss_pred EEEEEee----cCCCchhhhhHHHHHHHHHHHHHhhC
Confidence 3333221 12346677888888999999888843
No 176
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.06 E-value=3.4e+02 Score=29.29 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceE--EEecCcccccccCCCCCCcccccCC
Q 037925 37 PELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFL--HLRIGPYACAEWNYGGFPVWLHFIP 114 (821)
Q Consensus 37 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~V--ilrpGPYicaEw~~GG~P~WL~~~p 114 (821)
.+.++.+++.|+++|++++-. |+--........+..+|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~----P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKS----PRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecC----ccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 568999999999999997642 1111111112237888888999998863 33334542
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 115 GIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 115 ~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
+.+-+.|+.-++...+.+++.+..-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 23445677777777777777777666
No 177
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=29.04 E-value=77 Score=34.00 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=32.0
Q ss_pred EECCEEeEEEEEEeeCCCCC-cccHHHHHHHHHHcCCCEEE
Q 037925 13 VIDGKRRVLQSGSIHYPRST-PEVWPELIRKSKEGGLEVIE 52 (821)
Q Consensus 13 ~~dG~p~~~~sG~~Hy~R~~-~~~W~~~l~k~ka~G~N~V~ 52 (821)
.+.|+++..++|.+|+..-. ..+-+--++.||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 46899999999999986653 33347789999999998763
No 178
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=28.75 E-value=1.7e+02 Score=35.78 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=77.5
Q ss_pred CCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecC
Q 037925 15 DGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIG 94 (821)
Q Consensus 15 dG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpG 94 (821)
++++-+.+++..|+++.+.+.=-++|++-.++|...+-|=.+++. + .+.+|++.+++.++.||...-
T Consensus 459 ~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GIm 525 (612)
T PRK08645 459 GKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIM 525 (612)
T ss_pred CCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEee
Confidence 445668899999987765444445566667899999999877544 3 788888888877888888877
Q ss_pred ccccc--------ccCCCCCCcccccC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 95 PYACA--------EWNYGGFPVWLHFI-PGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 95 PYica--------Ew~~GG~P~WL~~~-p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
|.... +|..-=+|.|+.+. .. .. +....+++..++..+++..|.
T Consensus 526 Pi~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 526 PLVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred ecCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 75443 24445579998761 11 11 223667778888888888777
No 179
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=28.39 E-value=49 Score=34.57 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=14.5
Q ss_pred ceEEEEECCeeeeeec
Q 037925 622 GKGQAWVNGQSIGRYW 637 (821)
Q Consensus 622 gKG~vwVNG~nlGRYW 637 (821)
.+|.|||||++|.|.=
T Consensus 55 t~G~i~~~~~dl~~l~ 70 (223)
T COG2884 55 TRGKILVNGHDLSRLK 70 (223)
T ss_pred CCceEEECCeeccccc
Confidence 6799999999999974
No 180
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=28.09 E-value=1.6e+02 Score=34.40 Aligned_cols=109 Identities=20% Similarity=0.249 Sum_probs=63.2
Q ss_pred eCCCC--CcccHHHHHHHHHHcCCCEEEEc-eecCcc--CC--cCceeee-----cCc-----chHHHHHHHHH-HcCce
Q 037925 27 HYPRS--TPEVWPELIRKSKEGGLEVIETY-VFWNYH--EP--IRGQYYF-----EGR-----FDLVRFVKTVQ-EAGLF 88 (821)
Q Consensus 27 Hy~R~--~~~~W~~~l~k~ka~G~N~V~~y-v~Wn~h--Ep--~~G~~df-----~g~-----~dl~~fl~~a~-~~gL~ 88 (821)
+.+++ +-+.|+++|+.++++|+|+|..- +----. .| ..++..| ... .++.+++..++ ++||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 44444 44699999999999999999642 211000 00 0111111 111 49999999985 78998
Q ss_pred EEEecCcccccccCCCC-CCcccccCCCeeeecCChhHHHHH---HHHHHHHHHHHH
Q 037925 89 LHLRIGPYACAEWNYGG-FPVWLHFIPGIQFRTTNNPFKEEM---KRFLAKIIDLMK 141 (821)
Q Consensus 89 VilrpGPYicaEw~~GG-~P~WL~~~p~~~~R~~dp~y~~~~---~~~~~~l~~~l~ 141 (821)
++.-.= |+-=. ==.||..+|+.-.-..+.++|+.+ ++-+.++...|.
T Consensus 93 ~~~DvV------~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 93 SMTDVV------LNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred EEEEEe------eccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 765431 22211 246999999865555555666544 344455555554
No 181
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=28.07 E-value=2e+02 Score=34.22 Aligned_cols=275 Identities=17% Similarity=0.335 Sum_probs=129.2
Q ss_pred EEeEEEEEEee------CCCCCcccHHHHHHHH---HHcCCCEEEEcee--------cCccCCcCc-----eeeecC--c
Q 037925 17 KRRVLQSGSIH------YPRSTPEVWPELIRKS---KEGGLEVIETYVF--------WNYHEPIRG-----QYYFEG--R 72 (821)
Q Consensus 17 ~p~~~~sG~~H------y~R~~~~~W~~~l~k~---ka~G~N~V~~yv~--------Wn~hEp~~G-----~~df~g--~ 72 (821)
+.+.=++|++= ..+++++.=++.|+.+ +-+|++.+++.|- +.+-+ .|+ .|.... .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 34444667663 2234443333333333 4589999999886 33322 233 222221 0
Q ss_pred chHHHHHHHHHHc--CceEEEecCcccccccCCCCCCcccccCCCe----eee-cCChhHHHHHHHHHHHHHHHHHhccc
Q 037925 73 FDLVRFVKTVQEA--GLFLHLRIGPYACAEWNYGGFPVWLHFIPGI----QFR-TTNNPFKEEMKRFLAKIIDLMKQENL 145 (821)
Q Consensus 73 ~dl~~fl~~a~~~--gL~VilrpGPYicaEw~~GG~P~WL~~~p~~----~~R-~~dp~y~~~~~~~~~~l~~~l~~~~~ 145 (821)
..+-.+|+.|++. +|+++.-| |. .|+|+.....+ .++ ..++.|.++-.+||-+-++.++++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~-- 220 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE-- 220 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT--
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC--
Confidence 1234678877764 57777776 53 69999864322 344 235678888888888888888844
Q ss_pred cccCCCceEEecccccccccc---cccC------CCcHHHHH-HHHHHhHhcCC--ccceeeccCC--CCCC---cccc-
Q 037925 146 FASQGGPIILAQVENEYGNVE---WAYG------VGGELYVK-WAADTAVNLNT--SVPWVMCQQE--DAPD---PIIN- 207 (821)
Q Consensus 146 ~~~~gGpII~~QiENEyg~~~---~~~~------~~~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~~---~v~~- 207 (821)
|=+|=++-+-||..... ..|. +..++|++ .|.-.+++.|+ ++-++..+.. ..|+ .++.
T Consensus 221 ----GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 221 ----GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ----T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ----CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 45899999999987421 0111 12356665 47778888877 7777665531 2221 1121
Q ss_pred -----cCC--Cccc--C--------CCCCCCCCCCeEeeecccccccccCCCCCCC---CHHHHHHHHHHHHhcCCeeee
Q 037925 208 -----TCN--GFYC--D--------GFTPNSPSKPIMWTENYSGWFLSFGYAVPFR---PVEDLAFAVARFFETGGTFQN 267 (821)
Q Consensus 208 -----~~n--g~~~--~--------~~~~~~~~~P~~~~E~~~Gwf~~wg~~~~~~---~~~~~~~~~~~~l~~g~s~~n 267 (821)
... ++++ . ......|++.++.||-..|.. .|+...... .++..+..+..-|..+++ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 111 2222 1 111346888999999876531 122111111 123334434344555644 2
Q ss_pred eeee------ecCCCCCCC-CCCCCccccCCCCCCCCCCCCCCChhHHHHHHHHHHHh
Q 037925 268 YYMY------FGGTNFGRT-AGGPLVATSYDYDAPIDEYGFIRQPKWGHLRELHKAIK 318 (821)
Q Consensus 268 ~YM~------hGGTNfG~~-~Ga~~~~TSYDYdAPL~E~G~~~tpKy~~lr~l~~~i~ 318 (821)
+-++ .||-|++.. ..++.++.. +. +|. ..+|.|+.|..+.+|++
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~~--~~~p~yY~~gHfSKFV~ 424 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GEF--YKQPEYYAMGHFSKFVR 424 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG-GG----TEE--EE-HHHHHHHHHHTTS-
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc-CC----CeE--EEcHHHHHHHHHhcccC
Confidence 2222 488887532 112211110 11 111 23689999888776654
No 182
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=27.69 E-value=1.4e+02 Score=36.65 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=50.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-ee-----cCccC-Cc-Cceeeec---------CcchHHHHHHHHHHcCceEEEecC
Q 037925 32 TPEVWPELIRKSKEGGLEVIETY-VF-----WNYHE-PI-RGQYYFE---------GRFDLVRFVKTVQEAGLFLHLRIG 94 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~y-v~-----Wn~hE-p~-~G~~df~---------g~~dl~~fl~~a~~~gL~VilrpG 94 (821)
.+..|+ .++.+|+++|-+- ++ |...- |. .|-||-+ ...|++++++.|+++||+||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 455664 6888999999773 33 43221 22 4556533 336999999999999999997642
Q ss_pred --------cccccccCCCCCCccc
Q 037925 95 --------PYACAEWNYGGFPVWL 110 (821)
Q Consensus 95 --------PYicaEw~~GG~P~WL 110 (821)
||.-||...+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 3666666666666666
No 183
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=27.63 E-value=1.2e+02 Score=35.53 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=45.4
Q ss_pred eeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEe
Q 037925 26 IHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 26 ~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vilr 92 (821)
..|.+.|.+.=++.++++.+.|+..|+++.+-|.. +++...++.|+++|+.|.+.
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEE
Confidence 44666677777889999999999999999987654 26889999999999987665
No 184
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.40 E-value=2.2e+02 Score=32.14 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=46.2
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEcee----cCccCC----------------------------cCceeeecCcchHHHH
Q 037925 31 STPEVWPELIRKSKEGGLEVIETYVF----WNYHEP----------------------------IRGQYYFEGRFDLVRF 78 (821)
Q Consensus 31 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp----------------------------~~G~~df~g~~dl~~f 78 (821)
++.+..++.|+.|...++|+...++- |.+--+ ..|.|.- .|+..+
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHH
Confidence 36888999999999999999998874 433211 1244443 499999
Q ss_pred HHHHHHcCceEEEec
Q 037925 79 VKTVQEAGLFLHLRI 93 (821)
Q Consensus 79 l~~a~~~gL~Vilrp 93 (821)
++.|++.|+.||--+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999764
No 185
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=27.29 E-value=73 Score=36.00 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=45.3
Q ss_pred EeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEec
Q 037925 25 SIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 25 ~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
+-++ |.+...=.-..+.++++|-++|.+.|+|.-.++. .-+-.-..+|.++.+.|+++||-++|-+
T Consensus 98 t~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 98 TAPG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 3444 5544332233678999999999999999954331 0011223479999999999999988864
No 186
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=26.44 E-value=1.7e+02 Score=31.52 Aligned_cols=90 Identities=20% Similarity=0.329 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcC--ceEEEecCcccc-------cccCCCCCCc
Q 037925 38 ELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAG--LFLHLRIGPYAC-------AEWNYGGFPV 108 (821)
Q Consensus 38 ~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~g--L~VilrpGPYic-------aEw~~GG~P~ 108 (821)
++|++=-++|.+.+-|=.+.+ .+ .+.+|++.|++.| +.||+..-|-.. +++-.-++|.
T Consensus 151 ~~L~~Ki~aGA~f~iTQ~~fd----------~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~ 217 (274)
T cd00537 151 KRLKRKVDAGADFIITQLFFD----------ND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPD 217 (274)
T ss_pred HHHHHHHHCCCCEEeeccccc----------HH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCH
Confidence 344444456999999876643 33 7899999999998 557776666543 4555667899
Q ss_pred ccccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 109 WLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 109 WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
|+.+.=. ....+....+++-.++..+++..+.
T Consensus 218 ~~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~ 249 (274)
T cd00537 218 WLLERLE-KLKDDAEAVRAEGIEIAAELCDELL 249 (274)
T ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9986110 0112223445667777888888777
No 187
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.18 E-value=83 Score=33.65 Aligned_cols=60 Identities=20% Similarity=0.124 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCcC-ceeeecCcchHHHHHHHHHHcCceEEEecC
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPIR-GQYYFEGRFDLVRFVKTVQEAGLFLHLRIG 94 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~df~g~~dl~~fl~~a~~~gL~VilrpG 94 (821)
+.+++.|+.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+-+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4577889999999999998631100011111 01111 013688889999999999998873
No 188
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=25.85 E-value=1.6e+02 Score=37.81 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=55.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCc--chHHHHHHHHHHcCceEEEecCcccccc
Q 037925 26 IHYPRS---TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGR--FDLVRFVKTVQEAGLFLHLRIGPYACAE 100 (821)
Q Consensus 26 ~Hy~R~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~VilrpGPYicaE 100 (821)
+|..|+ +.+.-++.++++++.||-.=.+++-|.++.- -+.|.|+-. -|..++++..++.|+++++-.-|+|.+|
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 455554 4556678899999999988887777666653 335666643 3889999999999999988878888764
No 189
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=25.73 E-value=6.5e+02 Score=26.43 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=38.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEE
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHL 91 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vil 91 (821)
...-+++.|++++++|+..|+..- .+.+..+- .++..+.++++++||.+..
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~~-~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPADY-KELAELKELLADYGLEITS 63 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCchh-hhHHHHHHHHHHcCcEEEe
Confidence 456789999999999999999886 12222211 1289999999999998765
No 190
>PRK06703 flavodoxin; Provisional
Probab=25.60 E-value=3.4e+02 Score=26.28 Aligned_cols=96 Identities=10% Similarity=-0.021 Sum_probs=59.1
Q ss_pred CEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeec---CcchHHHHHHHHHHcCceEEEe
Q 037925 16 GKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFE---GRFDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 16 G~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~---g~~dl~~fl~~a~~~gL~Vilr 92 (821)
.-..++++-..+-.-.+|..+++-+..++..-++...+.+|- .++++ ...-.+.+-+..++.|..++.+
T Consensus 48 ~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg--------~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~ 119 (151)
T PRK06703 48 AYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFG--------SGDTAYPLFCEAVTIFEERLVERGAELVQE 119 (151)
T ss_pred cCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEc--------cCCCChHHHHHHHHHHHHHHHHCCCEEccc
Confidence 444566655444334456667777887876666655566662 12221 1234566777788999988776
Q ss_pred cCcccccccCCCCCCcccccCCCeeee--cCChhHHHHHHHHHHHHHHHHH
Q 037925 93 IGPYACAEWNYGGFPVWLHFIPGIQFR--TTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 93 pGPYicaEw~~GG~P~WL~~~p~~~~R--~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
| +++. .++..-+++++.|.++|+..++
T Consensus 120 ~----------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 120 G----------------------LKIELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred C----------------------eEEecCCCchhHHHHHHHHHHHHHHHHH
Confidence 4 1221 2234677888999999987776
No 191
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.47 E-value=23 Score=36.06 Aligned_cols=64 Identities=28% Similarity=0.445 Sum_probs=44.4
Q ss_pred eEEEEEEeeCCCC---CcccHHHHHHHHHHcCCCEE--EEceecCccCCcCc--eeeecCcchHHHHHHHHHHcCceEEE
Q 037925 19 RVLQSGSIHYPRS---TPEVWPELIRKSKEGGLEVI--ETYVFWNYHEPIRG--QYYFEGRFDLVRFVKTVQEAGLFLHL 91 (821)
Q Consensus 19 ~~~~sG~~Hy~R~---~~~~W~~~l~k~ka~G~N~V--~~yv~Wn~hEp~~G--~~df~g~~dl~~fl~~a~~~gL~Vil 91 (821)
...-+|--.|.|+ .|-.-+ +-+.++|.+.+ .|-| +.| -|||-...+|..|+++|+++||.+-|
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDTai-------KDGkslFdfm~~e~l~eFvd~Ah~hGL~~Al 185 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDTAI-------KDGKSLFDFMDEEELEEFVDLAHEHGLEVAL 185 (235)
T ss_pred eEEeccccchhhccCcCccccH---HHHHhcCCCEEEEeccc-------ccchhHHhhhcHHHHHHHHHHHHHcchHHHh
Confidence 3445666667775 333333 24567787754 4433 445 58998888999999999999999877
Q ss_pred e
Q 037925 92 R 92 (821)
Q Consensus 92 r 92 (821)
.
T Consensus 186 A 186 (235)
T COG1891 186 A 186 (235)
T ss_pred c
Confidence 5
No 192
>PLN02389 biotin synthase
Probab=25.34 E-value=88 Score=35.86 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCCEEEEcee--cCccCCcCceeeecCcchHHHHHHHHHHcCceEE
Q 037925 36 WPELIRKSKEGGLEVIETYVF--WNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLH 90 (821)
Q Consensus 36 W~~~l~k~ka~G~N~V~~yv~--Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vi 90 (821)
=++.++++|++|++.+..-+- -.++.-.-..-+|+ +..+.++.|++.||.|.
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 367899999999998766221 11111111112444 66788999999999863
No 193
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=25.05 E-value=1.2e+02 Score=38.04 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=48.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCc----chHHHHHHHHHHcCceEEEecCcccc
Q 037925 26 IHYPRS---TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGR----FDLVRFVKTVQEAGLFLHLRIGPYAC 98 (821)
Q Consensus 26 ~Hy~R~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~----~dl~~fl~~a~~~gL~VilrpGPYic 98 (821)
+|..|+ .-+.-+|+.+.+++|||.. =++|+..--.++.=||+=+ .++..|++-.++.|+++++-+=|+|.
T Consensus 300 f~~~RwgY~nls~~~dvv~~~~~agiPl---d~~~~DiDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is 376 (805)
T KOG1065|consen 300 FQLCRWGYKNLSVVRDVVENYRAAGIPL---DVIVIDIDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFIS 376 (805)
T ss_pred ceecccccccHHHHHHHHHHHHHcCCCc---ceeeeehhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccc
Confidence 444443 3344588999999999982 2344444444444455422 36899999999999999999888775
Q ss_pred c
Q 037925 99 A 99 (821)
Q Consensus 99 a 99 (821)
.
T Consensus 377 ~ 377 (805)
T KOG1065|consen 377 T 377 (805)
T ss_pred c
Confidence 3
No 194
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=24.87 E-value=99 Score=35.70 Aligned_cols=67 Identities=24% Similarity=0.185 Sum_probs=48.1
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCce-EEEecCcccccccCCCCCC
Q 037925 31 STPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLF-LHLRIGPYACAEWNYGGFP 107 (821)
Q Consensus 31 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~-VilrpGPYicaEw~~GG~P 107 (821)
...+.-+..|+.+|+.|+|+|-++.+=.---..+-.|.=+ ..|-+..++++.+.|.. .+|-.| ||+|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~A-i~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~ 257 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDA-ISDARNVFDMGAELGFEMDILDIG---------GGFP 257 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHH-HHHHHHHHHHHHhcCceEEEeecC---------CCCC
Confidence 3455667889999999999999998755443444444322 34677788999999998 567764 7777
No 195
>PRK10658 putative alpha-glucosidase; Provisional
Probab=24.85 E-value=1.7e+02 Score=36.18 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=46.5
Q ss_pred cccHHHHHHHHHHcCCCEEEEceecCccCC-cCceeeecCcc--hHHHHHHHHHHcCceEEEecCcccc
Q 037925 33 PEVWPELIRKSKEGGLEVIETYVFWNYHEP-IRGQYYFEGRF--DLVRFVKTVQEAGLFLHLRIGPYAC 98 (821)
Q Consensus 33 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~--dl~~fl~~a~~~gL~VilrpGPYic 98 (821)
.+.-.+.++++|+.||-.=.+.+-+.++.. .-+.|.|+-.+ |...+++..++.|++|++..=|||.
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~ 350 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIA 350 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcC
Confidence 444567889999999875443333333332 22466665433 8899999999999999999988875
No 196
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=24.82 E-value=3.5e+02 Score=31.48 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCEEEEcee----cCccCCcCceeeecCcchHHHHHHHHHHcCce--EEEecCcccccccCCCCCCcccc
Q 037925 38 ELIRKSKEGGLEVIETYVF----WNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLF--LHLRIGPYACAEWNYGGFPVWLH 111 (821)
Q Consensus 38 ~~l~k~ka~G~N~V~~yv~----Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~--VilrpGPYicaEw~~GG~P~WL~ 111 (821)
..++.+.+.|.|++++|+- |..-...+ .++.+|.+.++++||. .++-=+||.
T Consensus 145 ~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl-------------- 202 (413)
T PTZ00372 145 NSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL-------------- 202 (413)
T ss_pred HHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce--------------
Confidence 4678899999999999975 65444332 3899999999999885 244456663
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 037925 112 FIPGIQFRTTNNPFKEEMKRFLAKIIDLMK 141 (821)
Q Consensus 112 ~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~ 141 (821)
+.+-+.|+.-++...+.|.+-+.+-+
T Consensus 203 ----INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 203 ----INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred ----ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 23445566666666666666666655
No 197
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=24.36 E-value=1.2e+02 Score=33.94 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=45.5
Q ss_pred EECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcC
Q 037925 13 VIDGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAG 86 (821)
Q Consensus 13 ~~dG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~g 86 (821)
.+.|++++.++|--++.+ -++.++++|++.+.+..| |+.+.|+ ..|++.+.+.|++.|
T Consensus 224 ~l~~~~v~a~sGIg~P~~--------F~~~L~~~G~~~~~~~~f-------~DHh~yt-~~dl~~l~~~a~~~~ 281 (326)
T PF02606_consen 224 PLKGKPVLAFSGIGNPER--------FFDTLESLGIEVVGTLAF-------PDHHRYT-EQDLEKLEAEAKAAG 281 (326)
T ss_pred hccCCeeEEEEEcCChHH--------HHHHHHHcCCeEEEeeEC-------CCCCCCC-HHHHHHHHHhhcccc
Confidence 378999999999888743 345677799999988766 5555666 459999999999988
No 198
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.24 E-value=1.6e+02 Score=31.95 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=40.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEE
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHL 91 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vil 91 (821)
|.+.=++++++..+.|+..|+++++.+.. ..+...++.|++.|+.|.+
T Consensus 89 p~~~~~~di~~~~~~g~~~iri~~~~~~~------------~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 89 PDDVVELFVEKAAKNGIDIFRIFDALNDV------------RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEeecCChH------------HHHHHHHHHHHHCCCeEEE
Confidence 44556889999999999999999987652 3789999999999998775
No 199
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=24.18 E-value=3.2e+02 Score=30.84 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=46.8
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEcee----cCccCCc------Cceeeec---CcchHHHHHHHHHHcCceEEEec
Q 037925 31 STPEVWPELIRKSKEGGLEVIETYVF----WNYHEPI------RGQYYFE---GRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 31 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp~------~G~~df~---g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
++.+..++.|+.|....+|+...++- |.+--+. .|.|.=. -..|+..+++.|++.|+.||.-+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 36889999999999999999998864 6554331 2322211 12499999999999999999764
No 200
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=24.01 E-value=57 Score=36.76 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCCEEE-----EceecCccCCcCceeeecCcchHHHHHHHHHHcCceE
Q 037925 36 WPELIRKSKEGGLEVIE-----TYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFL 89 (821)
Q Consensus 36 W~~~l~k~ka~G~N~V~-----~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~V 89 (821)
-++.|+++|++|++.+- ++..--++.-.+++..++ +..+.++.|++.||.+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 45678999999987554 222222233345544444 5567899999999975
No 201
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.93 E-value=90 Score=33.18 Aligned_cols=60 Identities=13% Similarity=-0.051 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEec
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
+..++.++.++++|..+|.+...+.--...+.+..-.-...|.++.++|+++|+.+.+-|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 447788899999999999764333211111111100112467888899999999999987
No 202
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=23.71 E-value=67 Score=36.12 Aligned_cols=57 Identities=33% Similarity=0.451 Sum_probs=46.4
Q ss_pred CCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCc
Q 037925 15 DGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGL 87 (821)
Q Consensus 15 dG~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL 87 (821)
.|++++.++|=-||+|. ++.++++|++.+.++.| |+.++|+ ..+|+.+.+.++..+|
T Consensus 232 ~~~~v~afaGIg~P~rF--------f~tL~~~g~~~~~~~~F-------pDH~~f~-~~~l~~l~~~~~~~~L 288 (336)
T COG1663 232 KGKRVVAFAGIGNPQRF--------FATLRNLGIQVVETLAF-------PDHYDFS-AADLEDLAKKAQADGL 288 (336)
T ss_pred CCceEEEEEecCChHHH--------HHHHHHcCcceeeeecC-------Cchhhcc-HHHHHHHHhhhccceE
Confidence 46889999999999653 56789999999999977 8888898 3588888888877444
No 203
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=23.69 E-value=53 Score=36.55 Aligned_cols=90 Identities=19% Similarity=0.389 Sum_probs=51.9
Q ss_pred EEEEEEee------CCCCCcccHHHHHHHHHHc-CCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEe
Q 037925 20 VLQSGSIH------YPRSTPEVWPELIRKSKEG-GLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 20 ~~~sG~~H------y~R~~~~~W~~~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vilr 92 (821)
++.||. | +.+++.+-|++-.++-... |+|-++-| |.+-++.. ....++|++|+++|-|.|--
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~iWs 172 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYFIWS 172 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EEEEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceEEee
Confidence 456777 8 4556677777777777765 89888876 55555544 47899999999999988322
Q ss_pred cCcccccccCCC-CCCcccccCCCeeeecCChhHHHHHHHHHH
Q 037925 93 IGPYACAEWNYG-GFPVWLHFIPGIQFRTTNNPFKEEMKRFLA 134 (821)
Q Consensus 93 pGPYicaEw~~G-G~P~WL~~~p~~~~R~~dp~y~~~~~~~~~ 134 (821)
+-.++ .+-.|+-. ..++.|++++++|-+
T Consensus 173 -------~~~N~~am~k~~~~-------~~~~~~~~A~~~y~e 201 (324)
T PF08306_consen 173 -------DQNNPIAMEKWFGE-------QRNPEFKDACEKYSE 201 (324)
T ss_dssp ----------GGGHHHHHCCC-------CCSHHHHHHHHHHGG
T ss_pred -------cCCChHHHHHhhhh-------ccCHHHHHHHHHhhh
Confidence 11111 12223321 257888888877743
No 204
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=23.67 E-value=55 Score=33.22 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=53.9
Q ss_pred CEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceecCc-c-------------CCc----CceeeecCc-----
Q 037925 16 GKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNY-H-------------EPI----RGQYYFEGR----- 72 (821)
Q Consensus 16 G~p~~~~sG~~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~-h-------------Ep~----~G~~df~g~----- 72 (821)
|..|.++-..-= .-..-..+...++.++++|+ .|-+|.|-.. . ... +-.+|++..
T Consensus 21 gi~fviiKateG-~~y~D~~~~~~~~~a~~aGl-~~G~Yhy~~~~~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~~~~~ 98 (184)
T cd06525 21 GVEVVYIKATEG-TTFVDSYFNENYNGAKAAGL-KVGFYHFLVGTSNPEEQAENFYNTIKGKKMDLKPALDVEVNFGLSK 98 (184)
T ss_pred CCeEEEEEecCC-CcccCHhHHHHHHHHHHCCC-ceEEEEEeeCCCCHHHHHHHHHHhccccCCCCCeEEEEecCCCCCH
Confidence 555555554311 01233456666777777776 4555554321 0 111 124455431
Q ss_pred ----chHHHHHHHHHHc-CceEEEecCccccccc---CCCCCCcccccCC
Q 037925 73 ----FDLVRFVKTVQEA-GLFLHLRIGPYACAEW---NYGGFPVWLHFIP 114 (821)
Q Consensus 73 ----~dl~~fl~~a~~~-gL~VilrpGPYicaEw---~~GG~P~WL~~~p 114 (821)
..+.+|++.++++ |..++|=.+++..... .....|.||-+++
T Consensus 99 ~~~~~~~~~f~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~lWiA~Y~ 148 (184)
T cd06525 99 DELNDYVLRFIEEFEKLSGLKVGIYTYTSFINNNLDSRLSSYPLWIANYG 148 (184)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEecHHHHHHhccccccCCCeEEEecc
Confidence 3578899999888 9988887777543221 2345677887654
No 205
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=23.06 E-value=2.2e+02 Score=31.66 Aligned_cols=67 Identities=18% Similarity=0.370 Sum_probs=49.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee-cCc-cCCcCc-----eeeecCc--chHHHHHHHHHHcCceEEEecCcccc
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVF-WNY-HEPIRG-----QYYFEGR--FDLVRFVKTVQEAGLFLHLRIGPYAC 98 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~-Wn~-hEp~~G-----~~df~g~--~dl~~fl~~a~~~gL~VilrpGPYic 98 (821)
+.+.-++.++++++.||-.=.+++- |.. ++..-| .|+|.-. -|..++|+..++.|++|++..=|+|+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~ 96 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLA 96 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCcee
Confidence 6677789999999999987777664 532 222223 2444433 38999999999999999998877775
No 206
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.88 E-value=1.3e+02 Score=28.28 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEE
Q 037925 31 STPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLH 90 (821)
Q Consensus 31 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vi 90 (821)
++++...+.++.+++.|+..|=..-- ..-.+++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~~g----------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQPG----------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE-TT----------------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEcc----------------hHHHHHHHHHHHcCCEEE
Confidence 37889999999999999887644211 355888999999999865
No 207
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=22.31 E-value=69 Score=31.15 Aligned_cols=53 Identities=25% Similarity=0.397 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 037925 73 FDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLAKIIDLMKQE 143 (821)
Q Consensus 73 ~dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~~l~~~l~~~ 143 (821)
.||..||++|++.|+.|++=.-| |++.| .. +-|+ =.+.-++++++|-.+++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~w--------yd-ytG~--------~~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKW--------YD-YTGL--------SKEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHH--------HH-HTT----------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHH--------HH-HhCC--------CHHHHHHHHHHHHHHHHHC
Confidence 49999999999999998877655 44444 11 1121 0234466778887777743
No 208
>PRK07094 biotin synthase; Provisional
Probab=22.30 E-value=77 Score=34.99 Aligned_cols=50 Identities=18% Similarity=0.120 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCEEEEcee---cCccCCcCceeeecCcchHHHHHHHHHHcCceE
Q 037925 37 PELIRKSKEGGLEVIETYVF---WNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFL 89 (821)
Q Consensus 37 ~~~l~k~ka~G~N~V~~yv~---Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~V 89 (821)
++.+++||++|++.|.+.+- -..++-.-...+++ +..+.++.++++|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 45677788888887765432 12222211224444 6777888888888864
No 209
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=22.26 E-value=4.3e+02 Score=30.80 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=59.0
Q ss_pred eEEECCEEeEEEEEEeeCCCCC---cccHHHHHHHHHHcCCCE--E--EE-ceecCccCCcCceeeecCcchHHHHHHHH
Q 037925 11 ALVIDGKRRVLQSGSIHYPRST---PEVWPELIRKSKEGGLEV--I--ET-YVFWNYHEPIRGQYYFEGRFDLVRFVKTV 82 (821)
Q Consensus 11 ~~~~dG~p~~~~sG~~Hy~R~~---~~~W~~~l~k~ka~G~N~--V--~~-yv~Wn~hEp~~G~~df~g~~dl~~fl~~a 82 (821)
...+.+.-|+++.+.=+-++.+ ++.=+.-.+.+++.|++. | .. |. -|+-.|.+..++++ ..-|.+-|+.|
T Consensus 150 a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl-INLASpd~e~rekS-v~~~~~eL~rA 227 (413)
T PTZ00372 150 AYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYL-INLANPDKEKREKS-YDAFLDDLQRC 227 (413)
T ss_pred HHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCce-ecCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 4556778899999888776643 344444556677888863 3 22 33 88888988888887 34677788999
Q ss_pred HHcCce-EEEecC
Q 037925 83 QEAGLF-LHLRIG 94 (821)
Q Consensus 83 ~~~gL~-VilrpG 94 (821)
++.|.. |++-||
T Consensus 228 ~~LGa~~VV~HPG 240 (413)
T PTZ00372 228 EQLGIKLYNFHPG 240 (413)
T ss_pred HHcCCCEEEECCC
Confidence 999998 778887
No 210
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=21.87 E-value=1.7e+02 Score=32.55 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=42.0
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHcCCC-EEEEcee----cCcc-CCcCceeeecCcchHHHHHHHHHHcCceEEEe
Q 037925 22 QSGSIHYPRSTPEVWPELIRKSKEGGLE-VIETYVF----WNYH-EPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 22 ~sG~~Hy~R~~~~~W~~~l~k~ka~G~N-~V~~yv~----Wn~h-Ep~~G~~df~g~~dl~~fl~~a~~~gL~Vilr 92 (821)
++.+.++.-+. ++.|+.||++|++ .|++.+- ..+. --.+|. +++ ++.+.+++++++|+.|.+-
T Consensus 106 i~~esrpd~i~----~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~-t~~---~~~~ai~~~~~~Gi~v~~~ 174 (313)
T TIGR01210 106 VVVESRPEFID----EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGS-TFE---DFIRAAELARKYGAGVKAY 174 (313)
T ss_pred EEEEeCCCcCC----HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCC-CHH---HHHHHHHHHHHcCCcEEEE
Confidence 44455554444 6788899999999 4777654 3332 223443 444 8889999999999985543
No 211
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.79 E-value=4.2e+02 Score=21.18 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHcCCCEEEEceecCccCCcCce----eeec--CcchHHHHHHHHHHcCceEE
Q 037925 33 PEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQ----YYFE--GRFDLVRFVKTVQEAGLFLH 90 (821)
Q Consensus 33 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~----~df~--g~~dl~~fl~~a~~~gL~Vi 90 (821)
|....+.++.+.+.|+|.+++...=....-.+|. +.++ +..+++.+++..++.|..|.
T Consensus 9 ~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 9 PGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 5567889999999999999885431111001333 3333 33578899999999997653
No 212
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=21.63 E-value=9.5e+02 Score=25.19 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEE
Q 037925 37 PELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLH 90 (821)
Q Consensus 37 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vi 90 (821)
++.++.|+++|++++.+- |=|| |||. ..-|.+.++.+++.|+..+
T Consensus 63 ~~~~~~l~~~G~d~~~la---NNH~-----fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 63 PENAAALKAAGFDVVSLA---NNHS-----LDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHHhCCCEEEec---cCcc-----cccc-hHHHHHHHHHHHHCCCCEe
Confidence 356889999999998864 1222 5553 3457788888888888755
No 213
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.28 E-value=3e+02 Score=30.64 Aligned_cols=142 Identities=12% Similarity=0.190 Sum_probs=78.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee--cCcc---CC------------------------cCceeeecCcchHHHHHHHH
Q 037925 32 TPEVWPELIRKSKEGGLEVIETYVF--WNYH---EP------------------------IRGQYYFEGRFDLVRFVKTV 82 (821)
Q Consensus 32 ~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~h---Ep------------------------~~G~~df~g~~dl~~fl~~a 82 (821)
+.+..++.|+.|...++|++...+- |.+- .| ..|.|.- .|+..+++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTK---EEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccH---HHHHHHHHHH
Confidence 6889999999999999999998654 3221 11 1223322 4999999999
Q ss_pred HHcCceEEEecCcccccccCCCCC-CcccccCCCeeeec---------CChhHHHHHHHHHHHHHHHHHhccccccCCCc
Q 037925 83 QEAGLFLHLRIGPYACAEWNYGGF-PVWLHFIPGIQFRT---------TNNPFKEEMKRFLAKIIDLMKQENLFASQGGP 152 (821)
Q Consensus 83 ~~~gL~VilrpGPYicaEw~~GG~-P~WL~~~p~~~~R~---------~dp~y~~~~~~~~~~l~~~l~~~~~~~~~gGp 152 (821)
++.|+.||--+ +.=|- =+|+...|.+..+. -|| =..++-++++.|+..+. +++- ..++
T Consensus 92 ~~rgI~vIPEI--------D~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~-~~~~t~~f~~~l~~E~~--~~f~-~~~~ 159 (326)
T cd06564 92 KDRGVNIIPEI--------DSPGHSLAFTKAMPELGLKNPFSKYDKDTLDI-SNPEAVKFVKALFDEYL--DGFN-PKSD 159 (326)
T ss_pred HHcCCeEeccC--------CCcHHHHHHHHhhHHhcCCCcccCCCcccccC-CCHHHHHHHHHHHHHHH--HhcC-CCCC
Confidence 99999998653 22221 23444444332221 011 11344556666666666 4331 1123
Q ss_pred eEEeccc-ccccccccccCCCcHHHHHHHHHHhHhcCCcc
Q 037925 153 IILAQVE-NEYGNVEWAYGVGGELYVKWAADTAVNLNTSV 191 (821)
Q Consensus 153 II~~QiE-NEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 191 (821)
.| +|- -|+-... .....-..|++.+.+.+++.|..+
T Consensus 160 ~~--HiGgDE~~~~~-~~~~~~~~f~~~~~~~v~~~gk~~ 196 (326)
T cd06564 160 TV--HIGADEYAGDA-GYAEAFRAYVNDLAKYVKDKGKTP 196 (326)
T ss_pred EE--EeccccccccC-ccHHHHHHHHHHHHHHHHHcCCeE
Confidence 33 320 1111100 000112468888888888887664
No 214
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=21.20 E-value=2.7e+02 Score=30.19 Aligned_cols=53 Identities=23% Similarity=0.393 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHcCceEEEecCcccccccCCCCCCcccccCCCeeeecCChhHHHHHHHHHH
Q 037925 74 DLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLHFIPGIQFRTTNNPFKEEMKRFLA 134 (821)
Q Consensus 74 dl~~fl~~a~~~gL~VilrpGPYicaEw~~GG~P~WL~~~p~~~~R~~dp~y~~~~~~~~~ 134 (821)
...+++..|++.|-..+|-| |---||.|.|... ++.+-+.++.=+++-++|+.
T Consensus 38 K~~~~~~Eaa~~Ga~LV~fP------EAfiGGYPrg~~F--g~~~G~r~~eGR~ef~kY~a 90 (337)
T KOG0805|consen 38 KAEKYIVEAASKGAELVLFP------EAFIGGYPRGFRF--GLAVGVRNEEGRDEFRKYHA 90 (337)
T ss_pred HHHHHHHHHhcCCceEEEee------hHhccCCCCccee--eEEEeecchhhhHHHHHHHH
Confidence 46778999999999999888 6667999999875 34444444544455555543
No 215
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=21.11 E-value=1.6e+02 Score=31.81 Aligned_cols=49 Identities=22% Similarity=0.137 Sum_probs=33.6
Q ss_pred HHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecC
Q 037925 40 IRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIG 94 (821)
Q Consensus 40 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpG 94 (821)
..++|++|++.|-+. |..++-.|.=+ +..+.+=++.|.++||.+||+.|
T Consensus 79 ~~mLkd~G~~~viiG-----HSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVIIG-----HSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEeC-----cccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 457899999877764 55555444322 33444445559999999999988
No 216
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=21.05 E-value=1.5e+02 Score=36.06 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=44.5
Q ss_pred eeCCCCCcccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEE
Q 037925 26 IHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHL 91 (821)
Q Consensus 26 ~Hy~R~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vil 91 (821)
+=|.|.|.+.-+..++++++.|+.+|+++...|.. +++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 44666677777888999999999999999877764 3899999999999998643
No 217
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=20.96 E-value=1.7e+02 Score=31.44 Aligned_cols=49 Identities=27% Similarity=0.234 Sum_probs=37.4
Q ss_pred HHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEecC
Q 037925 40 IRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIG 94 (821)
Q Consensus 40 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~VilrpG 94 (821)
..++|++|++.|-+. |..++--|.- .+.++.+=++.|.++||.+||+.|
T Consensus 77 ~~mL~d~G~~~viiG-----HSERR~~f~E-t~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVIIG-----HSERRQYFGE-TDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEeC-----cccccCcCCC-CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 457899999977764 4444444433 356889999999999999999987
No 218
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.92 E-value=3.3e+02 Score=22.40 Aligned_cols=53 Identities=9% Similarity=0.219 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCC--cCc--eeeecCcchHHHHHHHHHHcCceEE
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEP--IRG--QYYFEGRFDLVRFVKTVQEAGLFLH 90 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--~~G--~~df~g~~dl~~fl~~a~~~gL~Vi 90 (821)
..-.+.++-+.+.|+|..+++.. +++ ... .+.+++ .|.+++++..++.|..|+
T Consensus 13 G~l~~i~~~l~~~~inI~~i~~~---~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 13 GQLADIAAIFKDRGVNIVSVLVY---PSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHHcCCCEEEEEEe---ccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 35567788899999999999864 222 222 445555 566799999999997654
No 219
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.91 E-value=1.5e+02 Score=32.23 Aligned_cols=45 Identities=13% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEec
Q 037925 37 PELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 37 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
.++|+.+.+.|+..|.+.+..+ +++ .+.+.++.|+++|+.|.+-+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
No 220
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.85 E-value=77 Score=35.57 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCEEEEceecCcc------CCcCceeeecCcchHHHHHHHHHHcCceE
Q 037925 37 PELIRKSKEGGLEVIETYVFWNYH------EPIRGQYYFEGRFDLVRFVKTVQEAGLFL 89 (821)
Q Consensus 37 ~~~l~k~ka~G~N~V~~yv~Wn~h------Ep~~G~~df~g~~dl~~fl~~a~~~gL~V 89 (821)
++.|++||++|++.+-. .-.... .-.|++..++ +..+.++.|+++||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 67899999999998740 000000 1123333333 5578999999999975
No 221
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=20.58 E-value=2.3e+02 Score=24.75 Aligned_cols=55 Identities=33% Similarity=0.335 Sum_probs=33.7
Q ss_pred EEEEEecCCCCCcceeEEeCCcceEEEEEECCEEEEEEEcccCcceeEEeeeecccCCccE-EEEEEe
Q 037925 458 YTASIHVMPGQGKEVFLNIESLGHAALVFVNKKLVAFGYGNHDFANFLINKKIELNEGINT-LDILSM 524 (821)
Q Consensus 458 Y~t~v~~~~~~~~~~~L~v~~~~D~a~VfVng~~~G~~~~~~~~~~~~~~~~i~l~~g~~~-L~ILve 524 (821)
|+..++... ....|...-....+.|.|||..+... + ....++|..|.|. |.|-|.
T Consensus 16 Y~~~V~~~~---~~v~v~a~~~~~~a~v~vng~~~~~~-~--------~~~~i~L~~G~n~~i~i~Vt 71 (88)
T PF12733_consen 16 YTVTVPNDV---DSVTVTATPEDSGATVTVNGVPVNSG-G--------YSATIPLNEGENTVITITVT 71 (88)
T ss_pred EEEEECCCc---eEEEEEEEECCCCEEEEEcCEEccCC-C--------cceeeEccCCCceEEEEEEE
Confidence 777775432 23445544457789999999765431 0 1123456778887 888774
No 222
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=20.58 E-value=3.3e+02 Score=22.49 Aligned_cols=46 Identities=26% Similarity=0.274 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEceecCccCCcCceeeecCcchHHHHHHHHHHcCceEEEe
Q 037925 34 EVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLR 92 (821)
Q Consensus 34 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vilr 92 (821)
...++.++++|+.|++.|.+=-. . ++. ...+|.+++++.||.||..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh----~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDH----G------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeC----C------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 34678999999999999876321 1 233 3578889999999988643
No 223
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.54 E-value=1.3e+02 Score=32.32 Aligned_cols=58 Identities=19% Similarity=0.143 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHcCCCEEEEceecC-ccCCcCceeeecCcchHHHHHHHHHHcCceEEEec
Q 037925 35 VWPELIRKSKEGGLEVIETYVFWN-YHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRI 93 (821)
Q Consensus 35 ~W~~~l~k~ka~G~N~V~~yv~Wn-~hEp~~G~~df~g~~dl~~fl~~a~~~gL~Vilrp 93 (821)
++++.++.++++|.++|.+.-... ..+..+-.++.. ...+.+..++|+++|+.+.|-+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRF-REGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHH-HHHHHHHHHHHHHcCCEEEEee
Confidence 467788999999999997531100 000000011110 1367788899999999999885
Done!