BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037927
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 29/156 (18%)
Query: 80 LHDQRALTRLHFPFIRPDSMVRF----IGSCHGLICLALDNYREIFIWNPSTG-AYTKLP 134
+ D +T LH P + + R+ I + GL C+ ++ Y+ + ++NP AY
Sbjct: 85 IEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPKVVLAYRGKK 144
Query: 135 ADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAK 194
+ + I S N Y+ M L D ++ I I G K
Sbjct: 145 RQEAPPHIFSI---------SDNAYQFM-------------LTDRENQSILITGESGAGK 182
Query: 195 TNSWKKVEHSFGSIHCCCEARNLQ--GRPMGTLVNE 228
T + K+V F +I E + + G+ GTL ++
Sbjct: 183 TVNTKRVIQYFATIAASGEKKKEEQSGKMQGTLEDQ 218
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 34/192 (17%)
Query: 69 PLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGS------CHGLICLALDNYREIFI 122
PLR+ D +D AL+ LH P + + VRFI S C G++ +A+
Sbjct: 61 PLRNPDILVGE-NDLTALSYLHEPAVLHNLKVRFIDSKLIYTYC-GIVLVAI-------- 110
Query: 123 WNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSR 182
NP Y +LP Y DI+ Y G F + + +D+ ++
Sbjct: 111 -NP----YEQLP-----IYGEDIIN---AYSGQNMGDMDPHIFAVAEEAYKQMARDERNQ 157
Query: 183 CIDIQGIVFTAKTNSWKKVEHSFGSI-----HCCCEARNLQGRPMGTLVNESLHWLTNNQ 237
I + G KT S K F ++ E + L P+ + + +N
Sbjct: 158 SIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNS 217
Query: 238 CEFGMFGITAFD 249
FG + FD
Sbjct: 218 SRFGKYIEIGFD 229
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 34/192 (17%)
Query: 69 PLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGS------CHGLICLALDNYREIFI 122
PLR+ D +D AL+ LH P + + VRFI S C G++ +A+
Sbjct: 61 PLRNPDILVGE-NDLTALSYLHEPAVLHNLKVRFIDSKLIYTYC-GIVLVAI-------- 110
Query: 123 WNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSR 182
NP Y +LP Y DI+ Y G F + + +D+ ++
Sbjct: 111 -NP----YEQLP-----IYGEDIIN---AYSGQNMGDMDPHIFAVAEEAYKQMARDERNQ 157
Query: 183 CIDIQGIVFTAKTNSWKKVEHSFGSI-----HCCCEARNLQGRPMGTLVNESLHWLTNNQ 237
I + G KT S K F ++ E + L P+ + + +N
Sbjct: 158 SIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNS 217
Query: 238 CEFGMFGITAFD 249
FG + FD
Sbjct: 218 SRFGKYIEIGFD 229
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 34/192 (17%)
Query: 69 PLRSFDCSTTSLHDQRALTRLHFPFIRPDSMVRFIGS------CHGLICLALDNYREIFI 122
PLR+ D +D AL+ LH P + + VRFI S C G++ +A+
Sbjct: 61 PLRNPDILVGE-NDLTALSYLHEPAVLHNLKVRFIDSKLIYTYC-GIVLVAI-------- 110
Query: 123 WNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSR 182
NP Y +LP Y DI+ Y G F + + +D+ ++
Sbjct: 111 -NP----YEQLP-----IYGEDIIN---AYSGQNMGDMDPHIFAVAEEAYKQMARDERNQ 157
Query: 183 CIDIQGIVFTAKTNSWKKVEHSFGSI-----HCCCEARNLQGRPMGTLVNESLHWLTNNQ 237
I + G KT S K F ++ E + L P+ + + +N
Sbjct: 158 SIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNS 217
Query: 238 CEFGMFGITAFD 249
FG + FD
Sbjct: 218 SRFGKYIEIGFD 229
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 272
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 3 NLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGF 40
+LPD++L+ + S L + LL+ CK+W L SD
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48
>pdb|3QV2|A Chain A, Structure Analysis Of Entamoeba Histolytica
Methyltransferase Ehmeth
Length = 327
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 195 TNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCE----FGMFGITAFDL 250
T S+ K+ GSI+C E + + L+N++L + T N+ + F T D
Sbjct: 236 TKSYTKIVEGTGSIYCPIEPHFIPVKKAEDLLNKNLRYFTPNEIKKIHGFSSNFTTQIDG 295
Query: 251 ATDK 254
TDK
Sbjct: 296 LTDK 299
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A
P27 Peptide
Length = 336
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 3 NLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGF 40
+LPD++L+ + S L + LL+ CK+W L SD
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48
>pdb|3N35|A Chain A, Erythrina Corallodendron Lectin Mutant (Y106g) With N-
Acetylgalactosamine
pdb|3N36|A Chain A, Erythrina Corallodendron Lectin Mutant (Y106g) In Complex
With Galactose
pdb|3N3H|A Chain A, Erythrina Corallodendron Lectin Mutant (Y106g) In Complex
With Citrate
Length = 242
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 30 QWLSLISDPGFALLQYKRTARNSPPKILLSKRSLYSKDSPLRSFDCSTTSLHDQRALTRL 89
Q SLI+ G +LQ + +N P + R+LY+K + T + + R +
Sbjct: 21 QGASLITQSG--VLQLTKINQNGMPAWDSTGRTLYAKPVHIWDMTTGTVASFETRFSFSI 78
Query: 90 HFPFIRP---DSMVRFIG 104
P+ RP D +V F+G
Sbjct: 79 EQPYTRPLPADGLVFFMG 96
>pdb|1SFY|A Chain A, Crystal Structure Of Recombinant Erythrina Corallodandron
Lectin
pdb|1SFY|B Chain B, Crystal Structure Of Recombinant Erythrina Corallodandron
Lectin
pdb|1SFY|C Chain C, Crystal Structure Of Recombinant Erythrina Corallodandron
Lectin
pdb|1SFY|D Chain D, Crystal Structure Of Recombinant Erythrina Corallodandron
Lectin
pdb|1SFY|E Chain E, Crystal Structure Of Recombinant Erythrina Corallodandron
Lectin
pdb|1SFY|F Chain F, Crystal Structure Of Recombinant Erythrina Corallodandron
Lectin
Length = 239
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 30 QWLSLISDPGFALLQYKRTARNSPPKILLSKRSLYSKDSPLRSFDCSTTSLHDQRALTRL 89
Q SLI+ G +LQ + +N P + R+LY+K + T + + R +
Sbjct: 21 QGASLITQSG--VLQLTKINQNGMPAWDSTGRTLYAKPVHIWDMTTGTVASFETRFSFSI 78
Query: 90 HFPFIRP---DSMVRFIG 104
P+ RP D +V F+G
Sbjct: 79 EQPYTRPLPADGLVFFMG 96
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 53
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 3 NLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISD 37
+LPD++L+ + S L + LL+ CK+W L SD
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45
>pdb|1LTE|A Chain A, Structure Of A Legume Lectin With An Ordered N-Linked
Carbohydrate In Complex With Lactose
Length = 239
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 30 QWLSLISDPGFALLQYKRTARNSPPKILLSKRSLYSKDSPLRSFDCSTTSLHDQRALTRL 89
Q SLI+ G +LQ + +N P + R+LY+K + T + + R +
Sbjct: 21 QGASLITQSG--VLQLTKINQNGMPAWDSTGRTLYAKPVHIWDMTTGTVASFETRFSFSI 78
Query: 90 HFPFIRP---DSMVRFIG 104
P+ RP D +V F+G
Sbjct: 79 EQPYTRPLPADGLVFFMG 96
>pdb|1LDK|E Chain E, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 41
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 3 NLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISD 37
+LPD++L+ + S L + LL+ CK+W L SD
Sbjct: 3 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,064,105
Number of Sequences: 62578
Number of extensions: 391162
Number of successful extensions: 876
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 869
Number of HSP's gapped (non-prelim): 16
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)