Query 037927
Match_columns 329
No_of_seqs 127 out of 1451
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:48:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1.1E-30 2.3E-35 225.6 21.5 184 103-315 1-190 (230)
2 PF08268 FBA_3: F-box associat 99.4 1E-12 2.3E-17 102.7 10.1 81 223-305 1-87 (129)
3 PF07734 FBA_1: F-box associat 99.4 1.7E-12 3.6E-17 105.9 11.6 93 223-320 1-101 (164)
4 PLN03215 ascorbic acid mannose 99.3 7.9E-10 1.7E-14 99.7 19.5 37 1-37 4-41 (373)
5 PHA02713 hypothetical protein; 99.0 3.6E-08 7.7E-13 95.7 18.9 160 118-312 320-503 (557)
6 PF12937 F-box-like: F-box-lik 99.0 5.4E-10 1.2E-14 70.8 3.7 42 1-42 1-42 (47)
7 KOG4441 Proteins containing BT 98.9 5.6E-08 1.2E-12 94.2 15.0 157 118-309 349-510 (571)
8 PHA02713 hypothetical protein; 98.8 9E-08 1.9E-12 92.9 15.6 159 118-305 367-540 (557)
9 PF00646 F-box: F-box domain; 98.8 2.1E-09 4.6E-14 68.5 1.9 43 2-44 4-46 (48)
10 PHA02790 Kelch-like protein; P 98.8 4.1E-07 8.8E-12 87.0 16.7 148 118-310 287-435 (480)
11 PHA02790 Kelch-like protein; P 98.7 6.9E-07 1.5E-11 85.4 17.9 136 105-284 316-454 (480)
12 smart00256 FBOX A Receptor for 98.7 7.6E-09 1.6E-13 63.4 2.9 39 4-42 1-39 (41)
13 KOG4441 Proteins containing BT 98.7 5.3E-07 1.1E-11 87.5 15.7 150 118-305 396-553 (571)
14 PHA03098 kelch-like protein; P 98.7 6.5E-07 1.4E-11 86.9 15.8 155 118-309 311-475 (534)
15 PHA03098 kelch-like protein; P 98.7 1.3E-06 2.8E-11 84.9 17.5 160 118-313 358-526 (534)
16 TIGR03547 muta_rot_YjhT mutatr 98.6 5.7E-06 1.2E-10 75.8 18.6 166 118-310 29-239 (346)
17 PRK14131 N-acetylneuraminic ac 98.4 2.2E-05 4.7E-10 72.8 18.6 166 118-309 50-259 (376)
18 PLN02153 epithiospecifier prot 98.4 1.9E-05 4.1E-10 72.3 17.1 159 118-306 50-233 (341)
19 PLN02153 epithiospecifier prot 98.4 2.5E-05 5.4E-10 71.5 17.6 165 118-305 101-291 (341)
20 PLN02193 nitrile-specifier pro 98.4 2.2E-05 4.8E-10 74.9 17.8 159 118-306 193-359 (470)
21 TIGR03547 muta_rot_YjhT mutatr 98.3 5E-05 1.1E-09 69.6 16.7 89 186-284 168-265 (346)
22 TIGR03548 mutarot_permut cycli 98.3 0.00011 2.4E-09 66.6 18.7 136 118-284 88-231 (323)
23 PLN02193 nitrile-specifier pro 98.2 0.0001 2.3E-09 70.3 18.1 160 118-305 244-417 (470)
24 TIGR03548 mutarot_permut cycli 98.2 9.1E-05 2E-09 67.2 16.9 154 119-308 40-204 (323)
25 PRK14131 N-acetylneuraminic ac 98.0 0.0002 4.3E-09 66.4 15.1 153 118-295 189-367 (376)
26 KOG4693 Uncharacterized conser 97.5 0.0029 6.3E-08 54.1 12.4 111 185-305 156-283 (392)
27 KOG2120 SCF ubiquitin ligase, 97.5 7.2E-05 1.6E-09 65.0 2.8 38 2-39 99-136 (419)
28 KOG1230 Protein containing rep 97.0 0.035 7.6E-07 50.5 14.8 172 118-316 98-294 (521)
29 KOG0379 Kelch repeat-containin 96.8 0.11 2.4E-06 49.8 17.4 161 118-305 139-308 (482)
30 KOG0281 Beta-TrCP (transducin 96.8 0.001 2.3E-08 58.6 3.1 43 2-44 76-122 (499)
31 KOG2997 F-box protein FBX9 [Ge 96.5 0.0015 3.2E-08 57.2 2.4 46 1-46 107-157 (366)
32 KOG1230 Protein containing rep 95.4 0.15 3.2E-06 46.6 9.8 109 187-305 99-222 (521)
33 KOG4693 Uncharacterized conser 95.3 0.24 5.1E-06 42.8 10.1 149 117-284 156-310 (392)
34 PF13964 Kelch_6: Kelch motif 95.3 0.039 8.4E-07 34.8 4.3 38 223-261 7-47 (50)
35 KOG0379 Kelch repeat-containin 95.2 0.69 1.5E-05 44.4 14.5 160 119-305 89-256 (482)
36 PF07893 DUF1668: Protein of u 94.9 1.3 2.7E-05 40.6 14.6 160 99-284 68-251 (342)
37 KOG0274 Cdc4 and related F-box 94.6 4.9 0.00011 39.1 18.3 42 1-42 108-149 (537)
38 PF01344 Kelch_1: Kelch motif; 94.4 0.094 2E-06 32.4 4.3 38 223-261 7-47 (47)
39 PF07762 DUF1618: Protein of u 94.3 0.27 5.8E-06 38.2 7.6 70 243-316 6-100 (131)
40 PF13964 Kelch_6: Kelch motif 94.3 0.099 2.1E-06 32.9 4.3 37 99-139 13-49 (50)
41 COG3055 Uncharacterized protei 92.1 0.64 1.4E-05 41.9 7.2 120 185-316 112-273 (381)
42 PF02191 OLF: Olfactomedin-lik 91.9 3.8 8.3E-05 35.6 11.8 85 208-303 65-165 (250)
43 PF07646 Kelch_2: Kelch motif; 91.7 0.4 8.7E-06 30.0 4.2 36 223-259 7-46 (49)
44 smart00612 Kelch Kelch domain. 91.6 0.34 7.4E-06 29.4 3.8 25 184-212 13-37 (47)
45 KOG4341 F-box protein containi 90.2 0.19 4.1E-06 46.2 2.2 37 3-39 74-110 (483)
46 PF13418 Kelch_4: Galactose ox 88.6 0.8 1.7E-05 28.5 3.7 35 223-258 7-44 (49)
47 smart00284 OLF Olfactomedin-li 88.4 4.1 8.9E-05 35.4 8.9 86 208-304 70-171 (255)
48 PF01344 Kelch_1: Kelch motif; 86.6 2 4.3E-05 26.2 4.6 22 182-203 24-45 (47)
49 KOG4152 Host cell transcriptio 86.3 11 0.00024 36.0 10.8 160 118-305 57-245 (830)
50 PLN02772 guanylate kinase 86.0 4.3 9.4E-05 37.6 8.2 71 223-296 30-108 (398)
51 PF07893 DUF1668: Protein of u 85.6 23 0.00051 32.3 12.9 85 187-284 200-296 (342)
52 smart00612 Kelch Kelch domain. 83.8 3.9 8.4E-05 24.5 5.0 22 242-263 14-36 (47)
53 PF07646 Kelch_2: Kelch motif; 82.2 3.9 8.5E-05 25.3 4.5 38 270-309 5-49 (49)
54 KOG2437 Muskelin [Signal trans 80.7 3.1 6.6E-05 39.4 5.0 143 120-284 231-393 (723)
55 COG4257 Vgb Streptogramin lyas 80.6 32 0.00069 30.4 10.7 110 117-265 209-319 (353)
56 PF13418 Kelch_4: Galactose ox 78.7 1.7 3.6E-05 26.9 1.9 21 117-137 28-48 (49)
57 PF13415 Kelch_3: Galactose ox 73.9 4 8.6E-05 25.3 2.7 25 117-141 18-42 (49)
58 PF13360 PQQ_2: PQQ-like domai 73.8 53 0.0011 27.6 13.0 101 185-303 131-237 (238)
59 PF13570 PQQ_3: PQQ-like domai 73.2 5.3 0.00011 23.5 3.0 24 223-252 17-40 (40)
60 COG3055 Uncharacterized protei 70.1 20 0.00044 32.6 7.1 87 185-284 57-154 (381)
61 PF13013 F-box-like_2: F-box-l 67.7 5.1 0.00011 30.0 2.5 28 2-29 23-50 (109)
62 smart00564 PQQ beta-propeller 64.4 15 0.00032 20.2 3.6 25 224-254 3-27 (33)
63 cd01207 Ena-Vasp Enabled-VASP- 56.8 50 0.0011 24.7 6.1 43 118-165 9-51 (111)
64 PF07250 Glyoxal_oxid_N: Glyox 50.6 1.1E+02 0.0023 26.6 8.0 95 184-292 44-146 (243)
65 KOG3545 Olfactomedin and relat 50.4 75 0.0016 27.5 6.9 85 196-295 56-154 (249)
66 PF07250 Glyoxal_oxid_N: Glyox 50.0 1.7E+02 0.0037 25.3 9.2 131 119-284 47-188 (243)
67 TIGR03300 assembly_YfgL outer 49.0 2.1E+02 0.0046 26.1 14.9 60 223-292 275-336 (377)
68 COG1520 FOG: WD40-like repeat 47.1 92 0.002 28.6 7.7 72 223-305 64-138 (370)
69 PF13360 PQQ_2: PQQ-like domai 45.9 1.8E+02 0.0038 24.3 9.6 106 106-255 35-144 (238)
70 cd01206 Homer Homer type EVH1 44.2 65 0.0014 24.0 4.8 41 117-165 10-51 (111)
71 PLN02919 haloacid dehalogenase 43.3 4.5E+02 0.0099 28.3 17.4 66 225-295 812-889 (1057)
72 PF07569 Hira: TUP1-like enhan 42.8 1.7E+02 0.0037 24.8 8.1 34 97-131 12-45 (219)
73 KOG1310 WD40 repeat protein [G 42.8 1.7E+02 0.0037 28.5 8.5 68 105-195 59-126 (758)
74 KOG2502 Tub family proteins [G 39.8 20 0.00043 32.5 1.9 36 2-37 46-89 (355)
75 TIGR03074 PQQ_membr_DH membran 39.2 1.3E+02 0.0028 30.9 7.8 69 223-297 190-290 (764)
76 PF01011 PQQ: PQQ enzyme repea 35.3 50 0.0011 19.0 2.7 14 242-255 9-22 (38)
77 PF15408 PH_7: Pleckstrin homo 33.9 27 0.00058 24.7 1.4 24 19-42 77-100 (104)
78 KOG0293 WD40 repeat-containing 33.5 4.2E+02 0.009 25.0 11.3 132 116-296 289-427 (519)
79 PF12768 Rax2: Cortical protei 32.9 96 0.0021 27.5 5.1 68 184-260 14-81 (281)
80 KOG3926 F-box proteins [Amino 31.0 61 0.0013 28.4 3.4 36 2-37 203-239 (332)
81 PF10282 Lactonase: Lactonase, 30.9 4.1E+02 0.0088 24.1 14.3 109 185-305 213-331 (345)
82 PF03088 Str_synth: Strictosid 29.5 1.2E+02 0.0027 21.6 4.3 34 224-258 5-52 (89)
83 PRK11138 outer membrane biogen 28.1 4.8E+02 0.01 24.0 14.7 26 223-254 252-277 (394)
84 PF05096 Glu_cyclase_2: Glutam 27.2 4.3E+02 0.0094 23.2 9.8 68 181-263 63-131 (264)
85 KOG0316 Conserved WD40 repeat- 26.5 4.3E+02 0.0093 23.0 12.4 28 105-132 26-53 (307)
86 KOG0278 Serine/threonine kinas 26.5 3.5E+02 0.0076 23.7 7.1 29 276-304 278-307 (334)
87 PF14781 BBS2_N: Ciliary BBSom 26.0 3.2E+02 0.007 21.3 6.5 58 242-304 72-133 (136)
88 PF00568 WH1: WH1 domain; Int 25.9 2.2E+02 0.0047 21.1 5.4 39 118-165 16-55 (111)
89 PRK11138 outer membrane biogen 25.4 5.4E+02 0.012 23.7 14.2 54 187-254 171-226 (394)
90 TIGR03075 PQQ_enz_alc_DH PQQ-d 25.0 3.3E+02 0.0072 26.6 7.8 28 223-256 65-94 (527)
91 PF14339 DUF4394: Domain of un 24.3 2.7E+02 0.0059 24.0 6.2 55 106-164 37-93 (236)
92 KOG4649 PQQ (pyrrolo-quinoline 23.9 5.1E+02 0.011 22.9 13.6 100 108-255 24-127 (354)
93 PF15492 Nbas_N: Neuroblastoma 23.6 5.2E+02 0.011 22.9 17.7 76 91-166 38-117 (282)
94 TIGR03300 assembly_YfgL outer 23.5 5.6E+02 0.012 23.3 14.9 24 107-131 105-128 (377)
95 KOG1852 Cell cycle-associated 23.4 55 0.0012 25.9 1.7 31 14-44 144-176 (223)
96 PF12768 Rax2: Cortical protei 22.9 5.4E+02 0.012 22.8 11.5 113 117-258 15-128 (281)
97 COG4257 Vgb Streptogramin lyas 21.5 5.9E+02 0.013 22.8 12.3 145 101-264 66-231 (353)
98 PRK04792 tolB translocation pr 21.5 7E+02 0.015 23.6 15.4 137 117-294 241-380 (448)
99 KOG2048 WD40 repeat protein [G 21.3 8.4E+02 0.018 24.5 12.7 31 101-132 209-239 (691)
100 KOG2055 WD40 repeat protein [G 21.3 7.3E+02 0.016 23.7 12.8 148 107-295 268-418 (514)
101 cd00216 PQQ_DH Dehydrogenases 21.1 2.5E+02 0.0054 27.0 6.1 54 223-284 402-456 (488)
102 PF13854 Kelch_5: Kelch motif 20.3 2E+02 0.0043 16.8 3.7 29 223-252 10-41 (42)
103 KOG0289 mRNA splicing factor [ 20.3 7.5E+02 0.016 23.5 10.3 100 185-305 368-469 (506)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.98 E-value=1.1e-30 Score=225.62 Aligned_cols=184 Identities=26% Similarity=0.481 Sum_probs=140.9
Q ss_pred EccccccEEEEEcCCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCC
Q 037927 103 IGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSR 182 (329)
Q Consensus 103 ~~s~~Glll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 182 (329)
+++||||||+. . ...++||||+||+++.||+++..........+++|||+.+++||||++.... ..
T Consensus 1 ~~sCnGLlc~~-~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~------------~~ 66 (230)
T TIGR01640 1 VVPCDGLICFS-Y-GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS------------GN 66 (230)
T ss_pred CcccceEEEEe-c-CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec------------CC
Confidence 47999999987 3 3789999999999999998765322112226789999999999999998430 11
Q ss_pred cccceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC-ceEEEEEECCCcccc-ccCC
Q 037927 183 CIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-MFGITAFDLATDKFS-RVPK 260 (329)
Q Consensus 183 ~~~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~~i~~fD~~~~~~~-~i~l 260 (329)
.....++||++++++||.+.. .+... . .... +|++||++||++. ..... ...|++||+++|+|+ .+++
T Consensus 67 ~~~~~~~Vys~~~~~Wr~~~~----~~~~~---~-~~~~-~v~~~G~lyw~~~-~~~~~~~~~IvsFDl~~E~f~~~i~~ 136 (230)
T TIGR01640 67 RNQSEHQVYTLGSNSWRTIEC----SPPHH---P-LKSR-GVCINGVLYYLAY-TLKTNPDYFIVSFDVSSERFKEFIPL 136 (230)
T ss_pred CCCccEEEEEeCCCCcccccc----CCCCc---c-ccCC-eEEECCEEEEEEE-ECCCCCcEEEEEEEcccceEeeeeec
Confidence 245789999999999999985 33322 1 2233 8999999999997 54321 238999999999999 5899
Q ss_pred CCCCCCC-ceeEEEEECCcEEEEEc---CCEEEEEEeeeCCCccceEEeeccceEEecC
Q 037927 261 PDFDYAH-QAMGLGVVGGRLCLLAL---GANVELWVMKEYGVKCSWQKHYCLGISISAD 315 (329)
Q Consensus 261 P~~~~~~-~~~~l~~~~g~L~~~~~---~~~l~vW~l~~~~~~~~W~~~~~~~~~i~~~ 315 (329)
|...... ....|++++|+|+++.. ..+++||+|++++.+ .|+|+ ++|+..
T Consensus 137 P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~-~W~k~----~~i~~~ 190 (230)
T TIGR01640 137 PCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQ-EWSKL----FTVPIP 190 (230)
T ss_pred CccccccccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCC-ceeEE----EEEcCc
Confidence 8765321 24679999999999988 367999999988754 59999 888753
No 2
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.43 E-value=1e-12 Score=102.71 Aligned_cols=81 Identities=26% Similarity=0.496 Sum_probs=66.0
Q ss_pred eeEECceeeEEeeccccCCceEEEEEECCCccccccCCCCCC-CCCceeEEEEECCcEEEEEc--C---CEEEEEEeeeC
Q 037927 223 GTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFD-YAHQAMGLGVVGGRLCLLAL--G---ANVELWVMKEY 296 (329)
Q Consensus 223 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~-~~~~~~~l~~~~g~L~~~~~--~---~~l~vW~l~~~ 296 (329)
++++||++||++. ........|++||+++|+|+.+++|... .......|.+++|+|+++.. . ..++||+|+|+
T Consensus 1 gicinGvly~~a~-~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 1 GICINGVLYWLAW-SEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred CEEECcEEEeEEE-ECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 5899999999999 5333378999999999999999999221 11156789999999999988 2 36999999988
Q ss_pred CCccceEEe
Q 037927 297 GVKCSWQKH 305 (329)
Q Consensus 297 ~~~~~W~~~ 305 (329)
+ +++|+|.
T Consensus 80 ~-k~~Wsk~ 87 (129)
T PF08268_consen 80 E-KQEWSKK 87 (129)
T ss_pred c-cceEEEE
Confidence 7 5789988
No 3
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.43 E-value=1.7e-12 Score=105.93 Aligned_cols=93 Identities=37% Similarity=0.629 Sum_probs=73.3
Q ss_pred eeEECceeeEEeeccccCC-ceEEEEEECCCccc-cccCCCCCCCC-CceeEEEE-ECCcEEEEEc---CCEEEEEEeee
Q 037927 223 GTLVNESLHWLTNNQCEFG-MFGITAFDLATDKF-SRVPKPDFDYA-HQAMGLGV-VGGRLCLLAL---GANVELWVMKE 295 (329)
Q Consensus 223 ~v~~~G~lywl~~~~~~~~-~~~i~~fD~~~~~~-~~i~lP~~~~~-~~~~~l~~-~~g~L~~~~~---~~~l~vW~l~~ 295 (329)
+|++||++||++. ..... ...|++||+++|+| ..+++|..... .....|++ .+|+||++.. ...+.||+|++
T Consensus 1 gV~vnG~~hW~~~-~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~ 79 (164)
T PF07734_consen 1 GVFVNGALHWLAY-DENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKK 79 (164)
T ss_pred CEEECCEEEeeEE-ecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEee
Confidence 5899999999998 55432 23899999999999 78899988762 24567754 4789999975 55799999997
Q ss_pred CCC-ccceEEeeccceEEecCCCCcc
Q 037927 296 YGV-KCSWQKHYCLGISISADDYGNW 320 (329)
Q Consensus 296 ~~~-~~~W~~~~~~~~~i~~~~~~~~ 320 (329)
++. +++|+|. ++|++.++...
T Consensus 80 ~~~~~~SWtK~----~~i~~~~~~~~ 101 (164)
T PF07734_consen 80 YGYGKESWTKL----FTIDLPPLPSL 101 (164)
T ss_pred eccCcceEEEE----EEEecCCCCCc
Confidence 652 7899999 99997665443
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.26 E-value=7.9e-10 Score=99.74 Aligned_cols=37 Identities=35% Similarity=0.643 Sum_probs=33.6
Q ss_pred CCCCcHHHHHHHHhcCC-cchhhhhhhchHhhHhhcCC
Q 037927 1 MSNLPDDVLIEVLSRLP-VKSLLRFKCACKQWLSLISD 37 (329)
Q Consensus 1 ~~~LP~Dll~eIL~rLp-~~~l~r~~~VcK~W~~li~~ 37 (329)
.++||+|||..|..||| ..++.|+|+||++||+.+..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 36899999999999998 66999999999999998773
No 5
>PHA02713 hypothetical protein; Provisional
Probab=98.99 E-value=3.6e-08 Score=95.72 Aligned_cols=160 Identities=8% Similarity=0.058 Sum_probs=106.0
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 197 (329)
..+..+||.+++|..+|+++..+.. ... ..++ =|+.+++.. . +......+++|+..+++
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~--~~~--~~~~-----g~IYviGG~------~------~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCR--FSL--AVID-----DTIYAIGGQ------N------GTNVERTIECYTMGDDK 378 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhc--eeE--EEEC-----CEEEEECCc------C------CCCCCceEEEEECCCCe
Confidence 4588999999999999999876532 111 2222 245555522 0 12234579999999999
Q ss_pred eEEecccCcccccccccccccCCCceeEECceeeEEeeccccC-------------------CceEEEEEECCCcccccc
Q 037927 198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF-------------------GMFGITAFDLATDKFSRV 258 (329)
Q Consensus 198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-------------------~~~~i~~fD~~~~~~~~i 258 (329)
|..++. ||... .... .+.++|.+|.+++ .... ....+.+||+.+++|+.+
T Consensus 379 W~~~~~----mp~~r-----~~~~-~~~~~g~IYviGG-~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v 447 (557)
T PHA02713 379 WKMLPD----MPIAL-----SSYG-MCVLDQYIYIIGG-RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447 (557)
T ss_pred EEECCC----CCccc-----cccc-EEEECCEEEEEeC-CCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence 999987 88766 3333 7889999999987 5321 024699999999999977
Q ss_pred -CCCCCCCCCceeEEEEECCcEEEEEc--CCEEEEEEeeeCCCc--cceEEeeccceEE
Q 037927 259 -PKPDFDYAHQAMGLGVVGGRLCLLAL--GANVELWVMKEYGVK--CSWQKHYCLGISI 312 (329)
Q Consensus 259 -~lP~~~~~~~~~~l~~~~g~L~~~~~--~~~l~vW~l~~~~~~--~~W~~~~~~~~~i 312 (329)
++|... ....+++.+|+||+++. +.....=..+.++++ +.|+.+..||...
T Consensus 448 ~~m~~~r---~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 448 PNFWTGT---IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred CCCCccc---ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 555443 23567889999999986 211111112333333 4699996666443
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.97 E-value=5.4e-10 Score=70.84 Aligned_cols=42 Identities=33% Similarity=0.734 Sum_probs=36.3
Q ss_pred CCCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHH
Q 037927 1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFAL 42 (329)
Q Consensus 1 ~~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~ 42 (329)
|..||+|++.+||++||++++.++..|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 678999999999999999999999999999999998775443
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.86 E-value=5.6e-08 Score=94.22 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=109.8
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 197 (329)
..+..+||.|++|..+|++...+.. +|.... ..++.+++.. + +......+|.|+..++.
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~-------~~v~~l--~g~iYavGG~------d------g~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSD-------FGVAVL--DGKLYAVGGF------D------GEKSLNSVECYDPVTNK 407 (571)
T ss_pred ceEEEecCCCCceeccCCccCcccc-------ceeEEE--CCEEEEEecc------c------cccccccEEEecCCCCc
Confidence 5788999999999999999988753 121111 2445555532 1 45566789999999999
Q ss_pred eEEecccCcccccccccccccCCCceeEECceeeEEeeccccC--CceEEEEEECCCcccccc-CCCCCCCCCceeEEEE
Q 037927 198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF--GMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGV 274 (329)
Q Consensus 198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~ 274 (329)
|..++. |+... .... .+.++|.+|-+++ .... ....+.+||+.+++|+.+ +++... ....+++
T Consensus 408 W~~va~----m~~~r-----~~~g-v~~~~g~iYi~GG-~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R---~~~g~a~ 473 (571)
T KOG4441|consen 408 WTPVAP----MLTRR-----SGHG-VAVLGGKLYIIGG-GDGSSNCLNSVECYDPETNTWTLIAPMNTRR---SGFGVAV 473 (571)
T ss_pred ccccCC----CCcce-----eeeE-EEEECCEEEEEcC-cCCCccccceEEEEcCCCCceeecCCccccc---ccceEEE
Confidence 999998 77654 3333 7899999999998 5432 257999999999999876 555544 3456889
Q ss_pred ECCcEEEEEc-CCEEEEEEeeeCC-CccceEEeeccc
Q 037927 275 VGGRLCLLAL-GANVELWVMKEYG-VKCSWQKHYCLG 309 (329)
Q Consensus 275 ~~g~L~~~~~-~~~l~vW~l~~~~-~~~~W~~~~~~~ 309 (329)
.+|+||+++. ...-.+-..+-++ ....|+.+..|.
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 9999999998 2222222233232 245799985443
No 8
>PHA02713 hypothetical protein; Provisional
Probab=98.84 E-value=9e-08 Score=92.93 Aligned_cols=159 Identities=9% Similarity=0.074 Sum_probs=101.1
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCC---------CCCcccceE
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDD---------NSRCIDIQG 188 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 188 (329)
..+.++||.|++|..+|+++..+.. .. +..++ =++.+++.. .....+.+. +.......+
T Consensus 367 ~sve~Ydp~~~~W~~~~~mp~~r~~--~~--~~~~~-----g~IYviGG~---~~~~~~~~~~~~~~~~~~~~~~~~~~v 434 (557)
T PHA02713 367 RTIECYTMGDDKWKMLPDMPIALSS--YG--MCVLD-----QYIYIIGGR---TEHIDYTSVHHMNSIDMEEDTHSSNKV 434 (557)
T ss_pred ceEEEEECCCCeEEECCCCCccccc--cc--EEEEC-----CEEEEEeCC---CcccccccccccccccccccccccceE
Confidence 3578999999999999998876543 11 12222 233344321 000000000 001124579
Q ss_pred EEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC--ceEEEEEECCC-cccccc-CCCCCC
Q 037927 189 IVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG--MFGITAFDLAT-DKFSRV-PKPDFD 264 (329)
Q Consensus 189 ~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~i~~fD~~~-~~~~~i-~lP~~~ 264 (329)
+.|+.++++|..++. |+... .... .+.++|.+|.+++ ..... ...+..||+.+ ++|+.+ ++|...
T Consensus 435 e~YDP~td~W~~v~~----m~~~r-----~~~~-~~~~~~~IYv~GG-~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 435 IRYDTVNNIWETLPN----FWTGT-----IRPG-VVSHKDDIYVVCD-IKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred EEECCCCCeEeecCC----CCccc-----ccCc-EEEECCEEEEEeC-CCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 999999999999987 77665 3333 7899999999987 53211 24678999999 799977 666544
Q ss_pred CCCceeEEEEECCcEEEEEc-CCEEEEEEeeeCC-CccceEEe
Q 037927 265 YAHQAMGLGVVGGRLCLLAL-GANVELWVMKEYG-VKCSWQKH 305 (329)
Q Consensus 265 ~~~~~~~l~~~~g~L~~~~~-~~~l~vW~l~~~~-~~~~W~~~ 305 (329)
....+++.+|+|++++. .... ..+-++ .+.+|+.+
T Consensus 504 ---~~~~~~~~~~~iyv~Gg~~~~~---~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 504 ---SALHTILHDNTIMMLHCYESYM---LQDTFNVYTYEWNHI 540 (557)
T ss_pred ---ccceeEEECCEEEEEeeeccee---ehhhcCcccccccch
Confidence 34678889999999997 3211 223332 24579887
No 9
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.80 E-value=2.1e-09 Score=68.46 Aligned_cols=43 Identities=42% Similarity=0.654 Sum_probs=36.8
Q ss_pred CCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHHHH
Q 037927 2 SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQ 44 (329)
Q Consensus 2 ~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~~~ 44 (329)
..||+|++.+||.+|+++++.+++.|||+|+.++.+..+...+
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 4699999999999999999999999999999999998876654
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=98.75 E-value=4.1e-07 Score=86.96 Aligned_cols=148 Identities=11% Similarity=-0.008 Sum_probs=99.9
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 197 (329)
..+..+||.+++|..+|+++..+.. .. +...+ -++.+++. ......++.|+..+++
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~--~~--~v~~~-----~~iYviGG---------------~~~~~sve~ydp~~n~ 342 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLY--AS--GVPAN-----NKLYVVGG---------------LPNPTSVERWFHGDAA 342 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhc--ce--EEEEC-----CEEEEECC---------------cCCCCceEEEECCCCe
Confidence 4577899999999999999876532 11 11222 24555552 1223568999999999
Q ss_pred eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCcccccc-CCCCCCCCCceeEEEEEC
Q 037927 198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVVG 276 (329)
Q Consensus 198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~ 276 (329)
|..++. ||... .... .+.++|.+|.+++ .... ...+..||+.+++|+.+ ++|... .....++.+
T Consensus 343 W~~~~~----l~~~r-----~~~~-~~~~~g~IYviGG-~~~~-~~~ve~ydp~~~~W~~~~~m~~~r---~~~~~~~~~ 407 (480)
T PHA02790 343 WVNMPS----LLKPR-----CNPA-VASINNVIYVIGG-HSET-DTTTEYLLPNHDQWQFGPSTYYPH---YKSCALVFG 407 (480)
T ss_pred EEECCC----CCCCC-----cccE-EEEECCEEEEecC-cCCC-CccEEEEeCCCCEEEeCCCCCCcc---ccceEEEEC
Confidence 999987 87655 3333 7899999999988 5432 35688999999999987 444332 234566889
Q ss_pred CcEEEEEcCCEEEEEEeeeCCCccceEEeeccce
Q 037927 277 GRLCLLALGANVELWVMKEYGVKCSWQKHYCLGI 310 (329)
Q Consensus 277 g~L~~~~~~~~l~vW~l~~~~~~~~W~~~~~~~~ 310 (329)
|+|++++. ..+++.. ..+.|+.+..|+.
T Consensus 408 ~~IYv~GG--~~e~ydp----~~~~W~~~~~m~~ 435 (480)
T PHA02790 408 RRLFLVGR--NAEFYCE----SSNTWTLIDDPIY 435 (480)
T ss_pred CEEEEECC--ceEEecC----CCCcEeEcCCCCC
Confidence 99999974 2233222 2456998855543
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=98.74 E-value=6.9e-07 Score=85.42 Aligned_cols=136 Identities=8% Similarity=0.048 Sum_probs=93.3
Q ss_pred cccccEEEEEc--CCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCC
Q 037927 105 SCHGLICLALD--NYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSR 182 (329)
Q Consensus 105 s~~Glll~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 182 (329)
..+|.|-+..+ ....+-.++|.+++|..+|+++..+.. ..+..++ =++.+++.. .
T Consensus 316 ~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~----~~~~~~~-----g~IYviGG~--------------~ 372 (480)
T PHA02790 316 PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN----PAVASIN-----NVIYVIGGH--------------S 372 (480)
T ss_pred EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc----cEEEEEC-----CEEEEecCc--------------C
Confidence 45565544312 224567889999999999999866532 1122222 245555521 1
Q ss_pred cccceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCcccccc-CCC
Q 037927 183 CIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRV-PKP 261 (329)
Q Consensus 183 ~~~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i-~lP 261 (329)
.....++.|+.++++|+.++. |+... .... .+.++|.+|.+++ ....||+++++|+.+ ++|
T Consensus 373 ~~~~~ve~ydp~~~~W~~~~~----m~~~r-----~~~~-~~~~~~~IYv~GG--------~~e~ydp~~~~W~~~~~m~ 434 (480)
T PHA02790 373 ETDTTTEYLLPNHDQWQFGPS----TYYPH-----YKSC-ALVFGRRLFLVGR--------NAEFYCESSNTWTLIDDPI 434 (480)
T ss_pred CCCccEEEEeCCCCEEEeCCC----CCCcc-----ccce-EEEECCEEEEECC--------ceEEecCCCCcEeEcCCCC
Confidence 123568999999999999987 77665 2332 6789999999877 357899999999987 454
Q ss_pred CCCCCCceeEEEEECCcEEEEEc
Q 037927 262 DFDYAHQAMGLGVVGGRLCLLAL 284 (329)
Q Consensus 262 ~~~~~~~~~~l~~~~g~L~~~~~ 284 (329)
... ....+++.+|+|++++.
T Consensus 435 ~~r---~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 435 YPR---DNPELIIVDNKLLLIGG 454 (480)
T ss_pred CCc---cccEEEEECCEEEEECC
Confidence 332 34577889999999997
No 12
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.74 E-value=7.6e-09 Score=63.41 Aligned_cols=39 Identities=46% Similarity=0.847 Sum_probs=36.4
Q ss_pred CcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHH
Q 037927 4 LPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFAL 42 (329)
Q Consensus 4 LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~ 42 (329)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887643
No 13
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.70 E-value=5.3e-07 Score=87.52 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=104.4
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 197 (329)
..+-.++|.|.+|..++++...+. +.|.-... =++.+++.. + . .......++.|+..+++
T Consensus 396 ~svE~YDp~~~~W~~va~m~~~r~-------~~gv~~~~--g~iYi~GG~------~---~--~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 396 NSVECYDPVTNKWTPVAPMLTRRS-------GHGVAVLG--GKLYIIGGG------D---G--SSNCLNSVECYDPETNT 455 (571)
T ss_pred ccEEEecCCCCcccccCCCCccee-------eeEEEEEC--CEEEEEcCc------C---C--CccccceEEEEcCCCCc
Confidence 357799999999999998886432 23322222 233334321 0 0 12256899999999999
Q ss_pred eEEecccCcccccccccccccCCCceeEECceeeEEeeccccC-CceEEEEEECCCcccccc-CCCCCCCCCceeEEEEE
Q 037927 198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF-GMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVV 275 (329)
Q Consensus 198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~ 275 (329)
|+.++. |+... .... .+.++|.+|.+++ .... ....+.+||+.+++|..+ +++... ....++..
T Consensus 456 W~~~~~----M~~~R-----~~~g-~a~~~~~iYvvGG-~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r---s~~g~~~~ 521 (571)
T KOG4441|consen 456 WTLIAP----MNTRR-----SGFG-VAVLNGKIYVVGG-FDGTSALSSVERYDPETNQWTMVAPMTSPR---SAVGVVVL 521 (571)
T ss_pred eeecCC----ccccc-----ccce-EEEECCEEEEECC-ccCCCccceEEEEcCCCCceeEcccCcccc---ccccEEEE
Confidence 999998 88776 3333 7899999999998 5432 255699999999999988 343333 34677889
Q ss_pred CCcEEEEEc------CCEEEEEEeeeCCCccceEEe
Q 037927 276 GGRLCLLAL------GANVELWVMKEYGVKCSWQKH 305 (329)
Q Consensus 276 ~g~L~~~~~------~~~l~vW~l~~~~~~~~W~~~ 305 (329)
+|+|++++. -.+++.| + .....|+..
T Consensus 522 ~~~ly~vGG~~~~~~l~~ve~y--d--p~~d~W~~~ 553 (571)
T KOG4441|consen 522 GGKLYAVGGFDGNNNLNTVECY--D--PETDTWTEV 553 (571)
T ss_pred CCEEEEEecccCccccceeEEc--C--CCCCceeeC
Confidence 999999998 3344555 1 124679998
No 14
>PHA03098 kelch-like protein; Provisional
Probab=98.68 E-value=6.5e-07 Score=86.95 Aligned_cols=155 Identities=11% Similarity=0.084 Sum_probs=103.7
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 197 (329)
..+..+||.|++|..+|+++..+.. ... ...+ . ++.+++.. . .......+++|+..+++
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~--~~~--~~~~----~-~lyv~GG~------~------~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKN--PGV--TVFN----N-RIYVIGGI------Y------NSISLNTVESWKPGESK 369 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCccccc--ceE--EEEC----C-EEEEEeCC------C------CCEecceEEEEcCCCCc
Confidence 3688999999999999988865532 111 1222 2 35555521 0 12345678999999999
Q ss_pred eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC--ceEEEEEECCCcccccc-CCCCCCCCCceeEEEE
Q 037927 198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG--MFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGV 274 (329)
Q Consensus 198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~ 274 (329)
|+..+. +|... .... .+.++|.+|.+++ ..... ...+..||+.+++|..+ ++|.... ....+.
T Consensus 370 W~~~~~----lp~~r-----~~~~-~~~~~~~iYv~GG-~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~---~~~~~~ 435 (534)
T PHA03098 370 WREEPP----LIFPR-----YNPC-VVNVNNLIYVIGG-ISKNDELLKTVECFSLNTNKWSKGSPLPISHY---GGCAIY 435 (534)
T ss_pred eeeCCC----cCcCC-----ccce-EEEECCEEEEECC-cCCCCcccceEEEEeCCCCeeeecCCCCcccc---CceEEE
Confidence 999887 77655 3333 6789999999987 53221 46799999999999987 4554432 235567
Q ss_pred ECCcEEEEEc-C--C----EEEEEEeeeCCCccceEEeeccc
Q 037927 275 VGGRLCLLAL-G--A----NVELWVMKEYGVKCSWQKHYCLG 309 (329)
Q Consensus 275 ~~g~L~~~~~-~--~----~l~vW~l~~~~~~~~W~~~~~~~ 309 (329)
.+|+|++++. . . .-.+|.++-. ...|+++..|+
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~--~~~W~~~~~~~ 475 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPV--TNKWTELSSLN 475 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCC--CCceeeCCCCC
Confidence 7999999986 1 1 1236666642 45799985444
No 15
>PHA03098 kelch-like protein; Provisional
Probab=98.67 E-value=1.3e-06 Score=84.91 Aligned_cols=160 Identities=11% Similarity=0.110 Sum_probs=105.1
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 197 (329)
..+.++||.|++|..+|+++..+.. .. +..++ . ++..++.. . . .......+++|+..+++
T Consensus 358 ~~v~~yd~~~~~W~~~~~lp~~r~~--~~--~~~~~----~-~iYv~GG~----~-~------~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 358 NTVESWKPGESKWREEPPLIFPRYN--PC--VVNVN----N-LIYVIGGI----S-K------NDELLKTVECFSLNTNK 417 (534)
T ss_pred ceEEEEcCCCCceeeCCCcCcCCcc--ce--EEEEC----C-EEEEECCc----C-C------CCcccceEEEEeCCCCe
Confidence 4678999999999999988766532 11 11222 2 34444421 0 0 11224678999999999
Q ss_pred eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC----ceEEEEEECCCcccccc-CCCCCCCCCceeEE
Q 037927 198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG----MFGITAFDLATDKFSRV-PKPDFDYAHQAMGL 272 (329)
Q Consensus 198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~----~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l 272 (329)
|+.++. +|... .... .+..+|.+|.+++ ..... ...+..||+.+++|+.+ ++|... ....+
T Consensus 418 W~~~~~----~p~~r-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r---~~~~~ 483 (534)
T PHA03098 418 WSKGSP----LPISH-----YGGC-AIYHDGKIYVIGG-ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR---INASL 483 (534)
T ss_pred eeecCC----CCccc-----cCce-EEEECCEEEEECC-ccCCCCCcccceEEEecCCCCceeeCCCCCccc---ccceE
Confidence 999887 77665 3333 7889999999987 43211 24599999999999987 344322 23455
Q ss_pred EEECCcEEEEEc-C--C-EEEEEEeeeCCCccceEEeeccceEEe
Q 037927 273 GVVGGRLCLLAL-G--A-NVELWVMKEYGVKCSWQKHYCLGISIS 313 (329)
Q Consensus 273 ~~~~g~L~~~~~-~--~-~l~vW~l~~~~~~~~W~~~~~~~~~i~ 313 (329)
++.+|+|++++. . . .-.|+.++-. ...|+.+..+|..++
T Consensus 484 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~~~ 526 (534)
T PHA03098 484 CIFNNKIYVVGGDKYEYYINEIEVYDDK--TNTWTLFCKFPKVIG 526 (534)
T ss_pred EEECCEEEEEcCCcCCcccceeEEEeCC--CCEEEecCCCccccc
Confidence 677999999987 1 1 2356777642 356999855555443
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.59 E-value=5.7e-06 Score=75.79 Aligned_cols=166 Identities=16% Similarity=0.166 Sum_probs=99.9
Q ss_pred ceEEEEc--CcccceeeCCCCCC-CCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcC
Q 037927 118 REIFIWN--PSTGAYTKLPADPD-ATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAK 194 (329)
Q Consensus 118 ~~~~V~N--P~T~~~~~LP~~~~-~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~ 194 (329)
..+.+++ +.+++|..+|+++. .+. .... ...+ =+|.+++... ... ..+.......++.|+..
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~--~~~~--~~~~-----~~iYv~GG~~---~~~---~~~~~~~~~~v~~Yd~~ 93 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRN--QAVA--AAID-----GKLYVFGGIG---KAN---SEGSPQVFDDVYRYDPK 93 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcc--cceE--EEEC-----CEEEEEeCCC---CCC---CCCcceecccEEEEECC
Confidence 4677777 47889999998873 332 1111 1222 1455555320 000 00000123578999999
Q ss_pred CCceEEecccCcccccccccccccCCCcee-EECceeeEEeeccccCC--------------------------------
Q 037927 195 TNSWKKVEHSFGSIHCCCEARNLQGRPMGT-LVNESLHWLTNNQCEFG-------------------------------- 241 (329)
Q Consensus 195 t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~-------------------------------- 241 (329)
+++|+.++. .+|... .... .+ .++|.+|.+++ .....
T Consensus 94 ~~~W~~~~~---~~p~~~-----~~~~-~~~~~~g~IYviGG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T TIGR03547 94 KNSWQKLDT---RSPVGL-----LGAS-GFSLHNGQAYFTGG-VNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED 163 (346)
T ss_pred CCEEecCCC---CCCCcc-----ccee-EEEEeCCEEEEEcC-cChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence 999999873 144433 2222 34 68999999987 53110
Q ss_pred ---ceEEEEEECCCcccccc-CCCCCCCCCceeEEEEECCcEEEEEc--C---CEEEEEEeeeCCCccceEEeeccce
Q 037927 242 ---MFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVVGGRLCLLAL--G---ANVELWVMKEYGVKCSWQKHYCLGI 310 (329)
Q Consensus 242 ---~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~g~L~~~~~--~---~~l~vW~l~~~~~~~~W~~~~~~~~ 310 (329)
...+..||+.+++|+.+ ++|.... ....+++.+|+|+++.. . ....+|.++-...+..|+++..||.
T Consensus 164 ~~~~~~v~~YDp~t~~W~~~~~~p~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~ 239 (346)
T TIGR03547 164 YFWNKNVLSYDPSTNQWRNLGENPFLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP 239 (346)
T ss_pred cCccceEEEEECCCCceeECccCCCCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence 15799999999999988 5663221 23466788999999986 1 2345666653222457999966643
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.45 E-value=2.2e-05 Score=72.81 Aligned_cols=166 Identities=17% Similarity=0.156 Sum_probs=97.8
Q ss_pred ceEEEEcCc--ccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCC
Q 037927 118 REIFIWNPS--TGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKT 195 (329)
Q Consensus 118 ~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t 195 (329)
..++++++. +++|..+|+++..... .... ...+ . ++..++... ... ..........++.|+..+
T Consensus 50 ~~~~~~d~~~~~~~W~~l~~~p~~~r~-~~~~--v~~~----~-~IYV~GG~~---~~~---~~~~~~~~~~v~~YD~~~ 115 (376)
T PRK14131 50 TSWYKLDLNAPSKGWTKIAAFPGGPRE-QAVA--AFID----G-KLYVFGGIG---KTN---SEGSPQVFDDVYKYDPKT 115 (376)
T ss_pred CeEEEEECCCCCCCeEECCcCCCCCcc-cceE--EEEC----C-EEEEEcCCC---CCC---CCCceeEcccEEEEeCCC
Confidence 456777764 5789999977632211 1111 1222 2 344444210 000 000011235789999999
Q ss_pred CceEEecccCcccccccccccccCCCceeE-ECceeeEEeeccccC----------------------------------
Q 037927 196 NSWKKVEHSFGSIHCCCEARNLQGRPMGTL-VNESLHWLTNNQCEF---------------------------------- 240 (329)
Q Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~---------------------------------- 240 (329)
++|+.++. ..|... .... .+. .+|.+|.+++ ....
T Consensus 116 n~W~~~~~---~~p~~~-----~~~~-~~~~~~~~IYv~GG-~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (376)
T PRK14131 116 NSWQKLDT---RSPVGL-----AGHV-AVSLHNGKAYITGG-VNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDY 185 (376)
T ss_pred CEEEeCCC---CCCCcc-----cceE-EEEeeCCEEEEECC-CCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhc
Confidence 99999874 124433 2222 344 7999999988 5320
Q ss_pred -CceEEEEEECCCcccccc-CCCCCCCCCceeEEEEECCcEEEEEc-----CCEEEEEEeeeCCCccceEEeeccc
Q 037927 241 -GMFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVVGGRLCLLAL-----GANVELWVMKEYGVKCSWQKHYCLG 309 (329)
Q Consensus 241 -~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~g~L~~~~~-----~~~l~vW~l~~~~~~~~W~~~~~~~ 309 (329)
....+..||+.+++|+.+ ++|.... ....++..+++|+++.. .....+|.++-+..+..|+++..||
T Consensus 186 ~~~~~v~~YD~~t~~W~~~~~~p~~~~--~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p 259 (376)
T PRK14131 186 FFNKEVLSYDPSTNQWKNAGESPFLGT--AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLP 259 (376)
T ss_pred CcCceEEEEECCCCeeeECCcCCCCCC--CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCC
Confidence 014699999999999987 5664222 23456777999999986 2445677665333346799996554
No 18
>PLN02153 epithiospecifier protein
Probab=98.41 E-value=1.9e-05 Score=72.26 Aligned_cols=159 Identities=13% Similarity=0.175 Sum_probs=95.6
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 197 (329)
..++++||.+++|..+|+................++ =+++.++.. . .......+++|+..+++
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~-----~~iyv~GG~------~------~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG-----TKLYIFGGR------D------EKREFSDFYSYDTVKNE 112 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC-----CEEEEECCC------C------CCCccCcEEEEECCCCE
Confidence 468999999999999887643221101111111222 245555521 0 11223478999999999
Q ss_pred eEEecccCccc-----ccccccccccCCCceeEECceeeEEeeccccCC-------ceEEEEEECCCccccccCCCCC-C
Q 037927 198 WKKVEHSFGSI-----HCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-------MFGITAFDLATDKFSRVPKPDF-D 264 (329)
Q Consensus 198 W~~~~~~~~~~-----p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-------~~~i~~fD~~~~~~~~i~lP~~-~ 264 (329)
|+.++. + |... .... .+..+|.+|.+++ ....+ ...+.+||+.+++|..++.+.. .
T Consensus 113 W~~~~~----~~~~~~p~~R-----~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~ 181 (341)
T PLN02153 113 WTFLTK----LDEEGGPEAR-----TFHS-MASDENHVYVFGG-VSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF 181 (341)
T ss_pred EEEecc----CCCCCCCCCc-----eeeE-EEEECCEEEEECC-ccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC
Confidence 999875 4 3333 2222 6788999999988 54211 2368899999999998753321 1
Q ss_pred CCCceeEEEEECCcEEEEEc-CC-----------EEEEEEeeeCCCccceEEee
Q 037927 265 YAHQAMGLGVVGGRLCLLAL-GA-----------NVELWVMKEYGVKCSWQKHY 306 (329)
Q Consensus 265 ~~~~~~~l~~~~g~L~~~~~-~~-----------~l~vW~l~~~~~~~~W~~~~ 306 (329)
.......+++.+|+|+++.. .. .-.++.++- ...+|+++.
T Consensus 182 ~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~ 233 (341)
T PLN02153 182 EKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVE 233 (341)
T ss_pred CCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc--CCCcEEecc
Confidence 11123456778999999864 10 124566653 235699983
No 19
>PLN02153 epithiospecifier protein
Probab=98.40 E-value=2.5e-05 Score=71.45 Aligned_cols=165 Identities=13% Similarity=0.129 Sum_probs=95.1
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 197 (329)
..+.++||.|++|..++++...........+..... +. |++.++... ... . .. .......+++|+..+++
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~---~~-~iyv~GG~~---~~~-~-~~-~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD---EN-HVYVFGGVS---KGG-L-MK-TPERFRTIEAYNIADGK 170 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE---CC-EEEEECCcc---CCC-c-cC-CCcccceEEEEECCCCe
Confidence 478899999999999987521110001111122211 11 355554220 000 0 00 00112468999999999
Q ss_pred eEEecccCcccccccccccccCCCceeEECceeeEEeeccccC---------CceEEEEEECCCccccccC----CCCCC
Q 037927 198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF---------GMFGITAFDLATDKFSRVP----KPDFD 264 (329)
Q Consensus 198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~---------~~~~i~~fD~~~~~~~~i~----lP~~~ 264 (329)
|+.++. +...... . .... .+.++|.+|.+++ .... ....+.+||+.+.+|+.+. +|...
T Consensus 171 W~~l~~----~~~~~~~-r-~~~~-~~~~~~~iyv~GG-~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r 242 (341)
T PLN02153 171 WVQLPD----PGENFEK-R-GGAG-FAVVQGKIWVVYG-FATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR 242 (341)
T ss_pred EeeCCC----CCCCCCC-C-Ccce-EEEECCeEEEEec-cccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc
Confidence 999876 3211100 1 2222 6789999999875 3210 0357899999999999874 23322
Q ss_pred CCCceeEEEEECCcEEEEEc-C-C-----------EEEEEEeeeCCCccceEEe
Q 037927 265 YAHQAMGLGVVGGRLCLLAL-G-A-----------NVELWVMKEYGVKCSWQKH 305 (329)
Q Consensus 265 ~~~~~~~l~~~~g~L~~~~~-~-~-----------~l~vW~l~~~~~~~~W~~~ 305 (329)
.....++.+++|+++.. . . .-.+|.++-. ...|+++
T Consensus 243 ---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~ 291 (341)
T PLN02153 243 ---SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKL 291 (341)
T ss_pred ---ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--ccEEEec
Confidence 23455677899999886 1 1 1278998853 4679988
No 20
>PLN02193 nitrile-specifier protein
Probab=98.40 E-value=2.2e-05 Score=74.92 Aligned_cols=159 Identities=12% Similarity=0.156 Sum_probs=98.0
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 197 (329)
..+.++||.+++|..+|+....+...........++ . +++.++.. . .......+++|+..+++
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~----~-~lYvfGG~------~------~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG----S-TLYVFGGR------D------ASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC----C-EEEEECCC------C------CCCCCccEEEEECCCCE
Confidence 358899999999998876432211001111112222 2 34445421 0 11234578999999999
Q ss_pred eEEecccCccc---ccccccccccCCCceeEECceeeEEeeccccC-CceEEEEEECCCccccccCCCCCCCC-CceeEE
Q 037927 198 WKKVEHSFGSI---HCCCEARNLQGRPMGTLVNESLHWLTNNQCEF-GMFGITAFDLATDKFSRVPKPDFDYA-HQAMGL 272 (329)
Q Consensus 198 W~~~~~~~~~~---p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~~~~~~i~lP~~~~~-~~~~~l 272 (329)
|+.++. + |... .... .+..++.+|..++ .... ....+.+||+.+.+|+.++.|..... .....+
T Consensus 256 W~~l~~----~~~~P~~R-----~~h~-~~~~~~~iYv~GG-~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~ 324 (470)
T PLN02193 256 WKLLTP----VEEGPTPR-----SFHS-MAADEENVYVFGG-VSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGL 324 (470)
T ss_pred EEEcCc----CCCCCCCc-----cceE-EEEECCEEEEECC-CCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEE
Confidence 999876 4 3333 2222 6778999999987 5322 14578899999999998765432211 123456
Q ss_pred EEECCcEEEEEc---CCEEEEEEeeeCCCccceEEee
Q 037927 273 GVVGGRLCLLAL---GANVELWVMKEYGVKCSWQKHY 306 (329)
Q Consensus 273 ~~~~g~L~~~~~---~~~l~vW~l~~~~~~~~W~~~~ 306 (329)
++.+|+++++.. ...-.+|+++-. +..|+++.
T Consensus 325 ~~~~gkiyviGG~~g~~~~dv~~yD~~--t~~W~~~~ 359 (470)
T PLN02193 325 EVVQGKVWVVYGFNGCEVDDVHYYDPV--QDKWTQVE 359 (470)
T ss_pred EEECCcEEEEECCCCCccCceEEEECC--CCEEEEec
Confidence 678999999876 222457777652 45699983
No 21
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.28 E-value=5e-05 Score=69.59 Aligned_cols=89 Identities=12% Similarity=0.184 Sum_probs=58.2
Q ss_pred ceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC--ceEEEEE--ECCCcccccc-CC
Q 037927 186 IQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG--MFGITAF--DLATDKFSRV-PK 260 (329)
Q Consensus 186 ~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~i~~f--D~~~~~~~~i-~l 260 (329)
..+++|+..+++|+.++. +|... . .... .+.++|.+|.+++ ..... ...+..| |+.+++|+.+ ++
T Consensus 168 ~~v~~YDp~t~~W~~~~~----~p~~~---r-~~~~-~~~~~~~iyv~GG-~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGE----NPFLG---T-AGSA-IVHKGNKLLLING-EIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred ceEEEEECCCCceeECcc----CCCCc---C-CCce-EEEECCEEEEEee-eeCCCccchheEEEEecCCCceeeecCCC
Confidence 579999999999999987 77532 1 2232 6788999999988 53211 1233334 5577799876 55
Q ss_pred CCCCC---CC-ceeEEEEECCcEEEEEc
Q 037927 261 PDFDY---AH-QAMGLGVVGGRLCLLAL 284 (329)
Q Consensus 261 P~~~~---~~-~~~~l~~~~g~L~~~~~ 284 (329)
|.... .. .....++.+|+|+++..
T Consensus 238 ~~~r~~~~~~~~~~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 238 PPPKSSSQEGLAGAFAGISNGVLLVAGG 265 (346)
T ss_pred CCCCCCccccccEEeeeEECCEEEEeec
Confidence 54321 10 12335678999999986
No 22
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.28 E-value=0.00011 Score=66.63 Aligned_cols=136 Identities=7% Similarity=-0.026 Sum_probs=84.1
Q ss_pred ceEEEEcCcccce----eeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEc
Q 037927 118 REIFIWNPSTGAY----TKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTA 193 (329)
Q Consensus 118 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss 193 (329)
..+..+|+.+++| ..+|+++..+.. .. +..++ =++..++... .......+++|+.
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~--~~--~~~~~-----~~iYv~GG~~------------~~~~~~~v~~yd~ 146 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFEN--GS--ACYKD-----GTLYVGGGNR------------NGKPSNKSYLFNL 146 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccC--ce--EEEEC-----CEEEEEeCcC------------CCccCceEEEEcC
Confidence 4688899999987 678877765432 11 12222 1455554210 1123467899999
Q ss_pred CCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCccccccC-CCCCCCC---Cce
Q 037927 194 KTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVP-KPDFDYA---HQA 269 (329)
Q Consensus 194 ~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i~-lP~~~~~---~~~ 269 (329)
.+++|..++. +|... . ... ..+.++|.+|.+++ ........+.+||+.+++|+.+. ++..... ...
T Consensus 147 ~~~~W~~~~~----~p~~~---r-~~~-~~~~~~~~iYv~GG-~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~ 216 (323)
T TIGR03548 147 ETQEWFELPD----FPGEP---R-VQP-VCVKLQNELYVFGG-GSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGA 216 (323)
T ss_pred CCCCeeECCC----CCCCC---C-Ccc-eEEEECCEEEEEcC-CCCccccceEEEecCCCeeEECCCCCCCCCceeccce
Confidence 9999999886 66422 1 222 25789999999987 53222235789999999998873 3211100 012
Q ss_pred eEEEEECCcEEEEEc
Q 037927 270 MGLGVVGGRLCLLAL 284 (329)
Q Consensus 270 ~~l~~~~g~L~~~~~ 284 (329)
..++..+++|+++..
T Consensus 217 ~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 217 ASIKINESLLLCIGG 231 (323)
T ss_pred eEEEECCCEEEEECC
Confidence 334455789998876
No 23
>PLN02193 nitrile-specifier protein
Probab=98.23 E-value=0.0001 Score=70.33 Aligned_cols=160 Identities=10% Similarity=0.128 Sum_probs=97.2
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 197 (329)
..+.++||.|++|..++++...... .... .+... .=+++.++.. . .......+++|+..+++
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~-R~~h-~~~~~----~~~iYv~GG~------~------~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTP-RSFH-SMAAD----EENVYVFGGV------S------ATARLKTLDSYNIVDKK 305 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCC-ccce-EEEEE----CCEEEEECCC------C------CCCCcceEEEEECCCCE
Confidence 5789999999999999876321111 1111 12111 1245555522 0 12234578999999999
Q ss_pred eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCccccccCC-CCCCCCCceeEEEEEC
Q 037927 198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPK-PDFDYAHQAMGLGVVG 276 (329)
Q Consensus 198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i~l-P~~~~~~~~~~l~~~~ 276 (329)
|..++.. ..+|... ... ..+.++|.+|.+++ ........+.+||+.+++|+.++. +...........+..+
T Consensus 306 W~~~~~~-~~~~~~R-----~~~-~~~~~~gkiyviGG-~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~ 377 (470)
T PLN02193 306 WFHCSTP-GDSFSIR-----GGA-GLEVVQGKVWVVYG-FNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVG 377 (470)
T ss_pred EEeCCCC-CCCCCCC-----CCc-EEEEECCcEEEEEC-CCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEEC
Confidence 9988641 0122222 122 26778999999887 432224689999999999988732 1111111234566779
Q ss_pred CcEEEEEc-CC----------EE--EEEEeeeCCCccceEEe
Q 037927 277 GRLCLLAL-GA----------NV--ELWVMKEYGVKCSWQKH 305 (329)
Q Consensus 277 g~L~~~~~-~~----------~l--~vW~l~~~~~~~~W~~~ 305 (329)
++|+++.. .. .+ .+|.++-. +..|+++
T Consensus 378 ~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~--t~~W~~~ 417 (470)
T PLN02193 378 KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE--TLQWERL 417 (470)
T ss_pred CEEEEECCccCCccccccCccceeccEEEEEcC--cCEEEEc
Confidence 99999887 11 12 58999863 4579998
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.23 E-value=9.1e-05 Score=67.22 Aligned_cols=154 Identities=11% Similarity=0.008 Sum_probs=95.2
Q ss_pred eEEEE-cCccc-ceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCC
Q 037927 119 EIFIW-NPSTG-AYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTN 196 (329)
Q Consensus 119 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~ 196 (329)
++++. +|..+ +|..+++++..+.. ..+..++ . +++.++.. . .......++.|+..++
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~----~~~~~~~----~-~lyviGG~------~------~~~~~~~v~~~d~~~~ 98 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAY----GASVSVE----N-GIYYIGGS------N------SSERFSSVYRITLDES 98 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccc----eEEEEEC----C-EEEEEcCC------C------CCCCceeEEEEEEcCC
Confidence 45555 45433 68888877765431 1112222 2 35455421 0 1223457888999998
Q ss_pred ce----EEecccCcccccccccccccCCCceeEECceeeEEeecccc-CCceEEEEEECCCcccccc-CCCCCCCCCcee
Q 037927 197 SW----KKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCE-FGMFGITAFDLATDKFSRV-PKPDFDYAHQAM 270 (329)
Q Consensus 197 ~W----~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~ 270 (329)
.| +.++. +|... .... .++++|.+|.+++ ... .....+..||+.+++|+.+ ++|.... ...
T Consensus 99 ~w~~~~~~~~~----lp~~~-----~~~~-~~~~~~~iYv~GG-~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r--~~~ 165 (323)
T TIGR03548 99 KEELICETIGN----LPFTF-----ENGS-ACYKDGTLYVGGG-NRNGKPSNKSYLFNLETQEWFELPDFPGEPR--VQP 165 (323)
T ss_pred ceeeeeeEcCC----CCcCc-----cCce-EEEECCEEEEEeC-cCCCccCceEEEEcCCCCCeeECCCCCCCCC--Ccc
Confidence 87 55555 67655 2233 6789999999988 532 1246899999999999988 4664322 234
Q ss_pred EEEEECCcEEEEEc-C--CEEEEEEeeeCCCccceEEeecc
Q 037927 271 GLGVVGGRLCLLAL-G--ANVELWVMKEYGVKCSWQKHYCL 308 (329)
Q Consensus 271 ~l~~~~g~L~~~~~-~--~~l~vW~l~~~~~~~~W~~~~~~ 308 (329)
..++.+++|+++.. . ....++.++-. +..|+++..|
T Consensus 166 ~~~~~~~~iYv~GG~~~~~~~~~~~yd~~--~~~W~~~~~~ 204 (323)
T TIGR03548 166 VCVKLQNELYVFGGGSNIAYTDGYKYSPK--KNQWQKVADP 204 (323)
T ss_pred eEEEECCEEEEEcCCCCccccceEEEecC--CCeeEECCCC
Confidence 55678999999986 2 22345666532 3569998544
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.02 E-value=0.0002 Score=66.42 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=89.0
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 197 (329)
..+.++||.|++|..+++++..... . .....++ -+++.++... ..+ ..........|+.+++.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~-~--~a~v~~~-----~~iYv~GG~~---~~~------~~~~~~~~~~~~~~~~~ 251 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTA-G--SAVVIKG-----NKLWLINGEI---KPG------LRTDAVKQGKFTGNNLK 251 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCC-c--ceEEEEC-----CEEEEEeeeE---CCC------cCChhheEEEecCCCcc
Confidence 4689999999999999877743211 1 1112222 2455555320 000 11112222334667899
Q ss_pred eEEecccCccccccccccccc--CCCceeEECceeeEEeeccccCC------------------ceEEEEEECCCccccc
Q 037927 198 WKKVEHSFGSIHCCCEARNLQ--GRPMGTLVNESLHWLTNNQCEFG------------------MFGITAFDLATDKFSR 257 (329)
Q Consensus 198 W~~~~~~~~~~p~~~~~~~~~--~~~~~v~~~G~lywl~~~~~~~~------------------~~~i~~fD~~~~~~~~ 257 (329)
|..++. +|......... .....++++|.+|.+++ ..... ...+..||+.+++|+.
T Consensus 252 W~~~~~----~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 326 (376)
T PRK14131 252 WQKLPD----LPPAPGGSSQEGVAGAFAGYSNGVLLVAGG-ANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQK 326 (376)
T ss_pred eeecCC----CCCCCcCCcCCccceEeceeECCEEEEeec-cCCCCChhhhhcCCcccccCCcceeehheEEecCCcccc
Confidence 999987 66432000000 01114778999999987 43110 1245689999999987
Q ss_pred c-CCCCCCCCCceeEEEEECCcEEEEEc-----CCEEEEEEeee
Q 037927 258 V-PKPDFDYAHQAMGLGVVGGRLCLLAL-----GANVELWVMKE 295 (329)
Q Consensus 258 i-~lP~~~~~~~~~~l~~~~g~L~~~~~-----~~~l~vW~l~~ 295 (329)
+ ++|.... ....+..+|+|+++.. ...-.|+.++.
T Consensus 327 ~~~lp~~r~---~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~ 367 (376)
T PRK14131 327 VGELPQGLA---YGVSVSWNNGVLLIGGETAGGKAVSDVTLLSW 367 (376)
T ss_pred cCcCCCCcc---ceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEE
Confidence 7 5665432 2356678999999997 23346777764
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.49 E-value=0.0029 Score=54.12 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=71.2
Q ss_pred cceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccC-C---------ceEEEEEECCCcc
Q 037927 185 DIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEF-G---------MFGITAFDLATDK 254 (329)
Q Consensus 185 ~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~---------~~~i~~fD~~~~~ 254 (329)
...+++++..|..||.+.. ...|... ..... ++.++|.+|-.++ .... + -+.|++||++++.
T Consensus 156 S~d~h~ld~~TmtWr~~~T--kg~Pprw---RDFH~--a~~~~~~MYiFGG-R~D~~gpfHs~~e~Yc~~i~~ld~~T~a 227 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHT--KGDPPRW---RDFHT--ASVIDGMMYIFGG-RSDESGPFHSIHEQYCDTIMALDLATGA 227 (392)
T ss_pred hccceeEeccceeeeehhc--cCCCchh---hhhhh--hhhccceEEEecc-ccccCCCccchhhhhcceeEEEeccccc
Confidence 3456777778889999976 2233333 11343 6888999999887 5432 1 5689999999999
Q ss_pred cccc-CCCCCCCCCceeEEEEECCcEEEEEc-CC-----EEEEEEeeeCCCccceEEe
Q 037927 255 FSRV-PKPDFDYAHQAMGLGVVGGRLCLLAL-GA-----NVELWVMKEYGVKCSWQKH 305 (329)
Q Consensus 255 ~~~i-~lP~~~~~~~~~~l~~~~g~L~~~~~-~~-----~l~vW~l~~~~~~~~W~~~ 305 (329)
|... +.|.-..........+.||++++... .. --.+|.++- ....|+++
T Consensus 228 W~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I 283 (392)
T KOG4693|consen 228 WTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVI 283 (392)
T ss_pred cccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeeccc--ccchheee
Confidence 9765 22222222134566788999999987 22 225677664 22347766
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=7.2e-05 Score=65.03 Aligned_cols=38 Identities=37% Similarity=0.665 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChh
Q 037927 2 SNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPG 39 (329)
Q Consensus 2 ~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~ 39 (329)
..||||+++.||+.|+.|+|.++..|||+|+++.++..
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 47999999999999999999999999999999988654
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.03 E-value=0.035 Score=50.52 Aligned_cols=172 Identities=15% Similarity=0.195 Sum_probs=98.6
Q ss_pred ceEEEEcCcccceeeC--CCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCC
Q 037927 118 REIFIWNPSTGAYTKL--PADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKT 195 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t 195 (329)
..++++|--+.+|+.+ |..|..+.. +.....+.+ .+..++..+..++.. .-.+-....+|+..+
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRss-----hq~va~~s~---~l~~fGGEfaSPnq~------qF~HYkD~W~fd~~t 163 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSS-----HQAVAVPSN---ILWLFGGEFASPNQE------QFHHYKDLWLFDLKT 163 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCcc-----ceeEEeccC---eEEEeccccCCcchh------hhhhhhheeeeeecc
Confidence 5789999999999975 433333321 122223332 233333221111111 111234678999999
Q ss_pred CceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC-----ceEEEEEECCCccccccCCCCCC-CCCce
Q 037927 196 NSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-----MFGITAFDLATDKFSRVPKPDFD-YAHQA 269 (329)
Q Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-----~~~i~~fD~~~~~~~~i~lP~~~-~~~~~ 269 (329)
+.|..+.. ..-|... . .+ +.|.....+.-.++ .+... .+-+.+||+.+=+|+.+..+-.. .....
T Consensus 164 rkweql~~--~g~PS~R---S-GH--RMvawK~~lilFGG-Fhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSG 234 (521)
T KOG1230|consen 164 RKWEQLEF--GGGPSPR---S-GH--RMVAWKRQLILFGG-FHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSG 234 (521)
T ss_pred chheeecc--CCCCCCC---c-cc--eeEEeeeeEEEEcc-eecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCc
Confidence 99999985 2223222 1 12 25655555555454 33222 56899999999999988654321 11134
Q ss_pred eEEEEE-CCcEEEEEc-------------CCEEEEEEeeeCC---CccceEEeeccceEEecCC
Q 037927 270 MGLGVV-GGRLCLLAL-------------GANVELWVMKEYG---VKCSWQKHYCLGISISADD 316 (329)
Q Consensus 270 ~~l~~~-~g~L~~~~~-------------~~~l~vW~l~~~~---~~~~W~~~~~~~~~i~~~~ 316 (329)
+.+.+. .|.+++-+. ...-.+|.|+... .+-.|+++ ..+...+
T Consensus 235 cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kv----kp~g~kP 294 (521)
T KOG1230|consen 235 CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKV----KPSGVKP 294 (521)
T ss_pred ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeec----cCCCCCC
Confidence 566666 788887765 3345789997443 23468888 6666655
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.81 E-value=0.11 Score=49.85 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=94.6
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 197 (329)
.++..+|+.|++|..+.+....+.. ........++ ++ |+.++.. + . .......++||+..+.+
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~-r~~Hs~~~~g----~~-l~vfGG~------~---~--~~~~~ndl~i~d~~~~~ 201 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPP-RAGHSATVVG----TK-LVVFGGI------G---G--TGDSLNDLHIYDLETST 201 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCC-cccceEEEEC----CE-EEEECCc------c---C--cccceeeeeeecccccc
Confidence 4899999999999988766552221 1112222222 33 4444421 0 1 12256789999999999
Q ss_pred eEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC--ceEEEEEECCCccccccC-CCCCCCCCceeEEEE
Q 037927 198 WKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG--MFGITAFDLATDKFSRVP-KPDFDYAHQAMGLGV 274 (329)
Q Consensus 198 W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~i~~fD~~~~~~~~i~-lP~~~~~~~~~~l~~ 274 (329)
|.++.. ..... .+......+.+++.++.+.+ ..... ..-+..||+.+.+|..++ ..........+.++.
T Consensus 202 W~~~~~----~g~~P---~pR~gH~~~~~~~~~~v~gG-~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~ 273 (482)
T KOG0379|consen 202 WSELDT----QGEAP---SPRYGHAMVVVGNKLLVFGG-GDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTV 273 (482)
T ss_pred ceeccc----CCCCC---CCCCCceEEEECCeEEEEec-cccCCceecceEeeecccceeeeccccCCCCCCcceeeeEE
Confidence 999986 22221 10112215566666666655 33111 568999999999888331 111111113456667
Q ss_pred ECCcEEEEEc--C----CEEEEEEeeeCCCccceEEe
Q 037927 275 VGGRLCLLAL--G----ANVELWVMKEYGVKCSWQKH 305 (329)
Q Consensus 275 ~~g~L~~~~~--~----~~l~vW~l~~~~~~~~W~~~ 305 (329)
.+..+++++. . .--++|.|+.. +..|+++
T Consensus 274 ~~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~~w~~~ 308 (482)
T KOG0379|consen 274 SGDHLLLFGGGTDPKQEPLGDLYGLDLE--TLVWSKV 308 (482)
T ss_pred ECCEEEEEcCCccccccccccccccccc--ccceeee
Confidence 7888888887 2 23467888764 4679999
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.77 E-value=0.001 Score=58.61 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=38.3
Q ss_pred CCCc----HHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHHHH
Q 037927 2 SNLP----DDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFALLQ 44 (329)
Q Consensus 2 ~~LP----~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~~~ 44 (329)
+.|| +++.+.||+.|...+|+.++.|||+|+++++++-.-++.
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 5689 999999999999999999999999999999987654443
No 31
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.54 E-value=0.0015 Score=57.18 Aligned_cols=46 Identities=26% Similarity=0.497 Sum_probs=39.4
Q ss_pred CCCCcHHHHHHHHhcCC-----cchhhhhhhchHhhHhhcCChhHHHHHhh
Q 037927 1 MSNLPDDVLIEVLSRLP-----VKSLLRFKCACKQWLSLISDPGFALLQYK 46 (329)
Q Consensus 1 ~~~LP~Dll~eIL~rLp-----~~~l~r~~~VcK~W~~li~~~~F~~~~~~ 46 (329)
|+.||||+|.+||.++= ..+|.++.+|||.|+-...+|.|-+....
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 46799999999998765 48999999999999999999997666543
No 32
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.43 E-value=0.15 Score=46.63 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=71.7
Q ss_pred eEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC-------ceEEEEEECCCccccccC
Q 037927 187 QGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG-------MFGITAFDLATDKFSRVP 259 (329)
Q Consensus 187 ~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-------~~~i~~fD~~~~~~~~i~ 259 (329)
...+|+-+.+.|+.+... ..|... ++-+..|+-.|.+|..++ ...++ .--+-.||+.+.+|..+.
T Consensus 99 dLy~Yn~k~~eWkk~~sp--n~P~pR-----sshq~va~~s~~l~~fGG-EfaSPnq~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSP--NAPPPR-----SSHQAVAVPSNILWLFGG-EFASPNQEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeEEeccccceeEeccC--CCcCCC-----ccceeEEeccCeEEEecc-ccCCcchhhhhhhhheeeeeeccchheeec
Confidence 456778889999999862 233333 222323444477777777 55443 346889999999999998
Q ss_pred CCCCCCCCceeEEEEECCcEEEEEc-----CCEE---EEEEeeeCCCccceEEe
Q 037927 260 KPDFDYAHQAMGLGVVGGRLCLLAL-----GANV---ELWVMKEYGVKCSWQKH 305 (329)
Q Consensus 260 lP~~~~~~~~~~l~~~~g~L~~~~~-----~~~l---~vW~l~~~~~~~~W~~~ 305 (329)
++..........++....+|.+.+. ...+ .||.++-+ ...|+++
T Consensus 171 ~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Kl 222 (521)
T KOG1230|consen 171 FGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKL 222 (521)
T ss_pred cCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc--ceeeeec
Confidence 8876655445677788888888776 1111 45665532 3569998
No 33
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.31 E-value=0.24 Score=42.76 Aligned_cols=149 Identities=12% Similarity=0.082 Sum_probs=83.5
Q ss_pred CceEEEEcCcccceeeCCCCCCC--CCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcC
Q 037927 117 YREIFIWNPSTGAYTKLPADPDA--TYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAK 194 (329)
Q Consensus 117 ~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~ 194 (329)
+.+..+.|-.|-+|+.+-.-... ..+ ... +..+| ..-.|..+.. .+.+-++.. .......+.+++..
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRD-FH~--a~~~~----~~MYiFGGR~---D~~gpfHs~-~e~Yc~~i~~ld~~ 224 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRD-FHT--ASVID----GMMYIFGGRS---DESGPFHSI-HEQYCDTIMALDLA 224 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhh-hhh--hhhcc----ceEEEecccc---ccCCCccch-hhhhcceeEEEecc
Confidence 45789999999999986422221 111 111 11122 1111112210 000001111 34456788899999
Q ss_pred CCceEEecccCcccccccccccccCCCceeEECceeeEEeecccc-CC--ceEEEEEECCCccccccCCCCC-CCCCcee
Q 037927 195 TNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCE-FG--MFGITAFDLATDKFSRVPKPDF-DYAHQAM 270 (329)
Q Consensus 195 t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~--~~~i~~fD~~~~~~~~i~lP~~-~~~~~~~ 270 (329)
|+.|...+.. ...|... . .. + ...-||.+|..++ ... .+ -+.+..||+.+..|+.|..-.- .......
T Consensus 225 T~aW~r~p~~-~~~P~GR---R-SH-S-~fvYng~~Y~FGG-Yng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRq 296 (392)
T KOG4693|consen 225 TGAWTRTPEN-TMKPGGR---R-SH-S-TFVYNGKMYMFGG-YNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQ 296 (392)
T ss_pred ccccccCCCC-CcCCCcc---c-cc-c-eEEEcceEEEecc-cchhhhhhhcceeecccccchheeeeccCCCCCcccce
Confidence 9999877541 1233333 2 22 2 6778999999886 432 11 4589999999999999843211 1111223
Q ss_pred EEEEECCcEEEEEc
Q 037927 271 GLGVVGGRLCLLAL 284 (329)
Q Consensus 271 ~l~~~~g~L~~~~~ 284 (329)
.-++.+|++++...
T Consensus 297 C~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 297 CSVVSGGKVYLFGG 310 (392)
T ss_pred eEEEECCEEEEecC
Confidence 44577899999887
No 34
>PF13964 Kelch_6: Kelch motif
Probab=95.27 E-value=0.039 Score=34.84 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=31.5
Q ss_pred eeEECceeeEEeecccc--CCceEEEEEECCCcccccc-CCC
Q 037927 223 GTLVNESLHWLTNNQCE--FGMFGITAFDLATDKFSRV-PKP 261 (329)
Q Consensus 223 ~v~~~G~lywl~~~~~~--~~~~~i~~fD~~~~~~~~i-~lP 261 (329)
.|.++|.+|.+++ ... .....+..||+++++|+.+ ++|
T Consensus 7 ~v~~~~~iyv~GG-~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 7 AVVVGGKIYVFGG-YDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEECCEEEEECC-CCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 7899999999998 544 2267999999999999988 454
No 35
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.22 E-value=0.69 Score=44.43 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=95.5
Q ss_pred eEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCce
Q 037927 119 EIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNSW 198 (329)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~W 198 (329)
+++|+|-.++.|............ .........+ + +++.++... . .......+..|+..++.|
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~-r~g~~~~~~~----~-~l~lfGG~~-----~------~~~~~~~l~~~d~~t~~W 151 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSP-RYGHSLSAVG----D-KLYLFGGTD-----K------KYRNLNELHSLDLSTRTW 151 (482)
T ss_pred eeEEeecCCcccccccccCCCCCc-ccceeEEEEC----C-eEEEEcccc-----C------CCCChhheEeccCCCCcE
Confidence 599999999888776544443322 1111111112 2 343444210 0 123356889999999999
Q ss_pred EEecccCcccccccccccccCCCceeEECceeeEEeeccccCC--ceEEEEEECCCccccccCCCCCCCCC-ceeEEEEE
Q 037927 199 KKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG--MFGITAFDLATDKFSRVPKPDFDYAH-QAMGLGVV 275 (329)
Q Consensus 199 ~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~i~~fD~~~~~~~~i~lP~~~~~~-~~~~l~~~ 275 (329)
+.....- ++|... ..-+ .+..+-++|..++ ..... .+.+.+||+++.+|..+......... ....+++.
T Consensus 152 ~~l~~~~-~~P~~r-----~~Hs-~~~~g~~l~vfGG-~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~ 223 (482)
T KOG0379|consen 152 SLLSPTG-DPPPPR-----AGHS-ATVVGTKLVVFGG-IGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVV 223 (482)
T ss_pred EEecCcC-CCCCCc-----ccce-EEEECCEEEEECC-ccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEE
Confidence 9987621 123333 1222 5666677888777 54332 78999999999999988543322211 34567777
Q ss_pred CCcEEEEEc-C----CEEEEEEeeeCCCccceEEe
Q 037927 276 GGRLCLLAL-G----ANVELWVMKEYGVKCSWQKH 305 (329)
Q Consensus 276 ~g~L~~~~~-~----~~l~vW~l~~~~~~~~W~~~ 305 (329)
+++++++.. . .-=.+|.|+-.. ..|.++
T Consensus 224 ~~~~~v~gG~~~~~~~l~D~~~ldl~~--~~W~~~ 256 (482)
T KOG0379|consen 224 GNKLLVFGGGDDGDVYLNDVHILDLST--WEWKLL 256 (482)
T ss_pred CCeEEEEeccccCCceecceEeeeccc--ceeeec
Confidence 888888887 2 222678777533 557755
No 36
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.90 E-value=1.3 Score=40.62 Aligned_cols=160 Identities=13% Similarity=0.132 Sum_probs=89.3
Q ss_pred CeEEEccccccEEEEEcCCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccC
Q 037927 99 MVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQD 178 (329)
Q Consensus 99 ~~~~~~s~~Glll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~ 178 (329)
.+.+.+..+.-|+.. +.....+|+++.|+....+|.+..... .. +.+.. ++. |.++... .... .
T Consensus 68 ~~~F~al~gskIv~~-d~~~~t~vyDt~t~av~~~P~l~~pk~--~p--isv~V---G~~--LY~m~~~---~~~~---~ 131 (342)
T PF07893_consen 68 SMDFFALHGSKIVAV-DQSGRTLVYDTDTRAVATGPRLHSPKR--CP--ISVSV---GDK--LYAMDRS---PFPE---P 131 (342)
T ss_pred eeEEEEecCCeEEEE-cCCCCeEEEECCCCeEeccCCCCCCCc--ce--EEEEe---CCe--EEEeecc---Cccc---c
Confidence 444555455566665 566789999999999999998765432 11 22222 122 5556532 0000 0
Q ss_pred CCCCcccceEEEEEc----------CCCceEEecccCccccccccccccc---CCCceeEECceeeEEeeccccCCceEE
Q 037927 179 DNSRCIDIQGIVFTA----------KTNSWKKVEHSFGSIHCCCEARNLQ---GRPMGTLVNESLHWLTNNQCEFGMFGI 245 (329)
Q Consensus 179 ~~~~~~~~~~~vyss----------~t~~W~~~~~~~~~~p~~~~~~~~~---~~~~~v~~~G~lywl~~~~~~~~~~~i 245 (329)
. .......+|+++- ++.+|+.++. .|+...... . -.+.+|+ +|.--|+.. ... ...-
T Consensus 132 ~-~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~----PPf~~~~~~-~~~~i~sYavv-~g~~I~vS~-~~~--~~GT 201 (342)
T PF07893_consen 132 A-GRPDFPCFEALVYRPPPDDPSPEESWSWRSLPP----PPFVRDRRY-SDYRITSYAVV-DGRTIFVSV-NGR--RWGT 201 (342)
T ss_pred c-cCccceeEEEeccccccccccCCCcceEEcCCC----CCccccCCc-ccceEEEEEEe-cCCeEEEEe-cCC--ceEE
Confidence 0 0000116666632 2347888776 564441000 0 1223566 898888866 321 1268
Q ss_pred EEEECCCcccccc---CCCCCCCCC----ceeEEEEE--C--CcEEEEEc
Q 037927 246 TAFDLATDKFSRV---PKPDFDYAH----QAMGLGVV--G--GRLCLLAL 284 (329)
Q Consensus 246 ~~fD~~~~~~~~i---~lP~~~~~~----~~~~l~~~--~--g~L~~~~~ 284 (329)
.+||+++.+|+.. .||...... ....++.+ + +.||....
T Consensus 202 ysfDt~~~~W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv 251 (342)
T PF07893_consen 202 YSFDTESHEWRKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDV 251 (342)
T ss_pred EEEEcCCcceeeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEec
Confidence 9999999999988 788765443 23344432 3 37877776
No 37
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.56 E-value=4.9 Score=39.12 Aligned_cols=42 Identities=29% Similarity=0.549 Sum_probs=37.7
Q ss_pred CCCCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChhHHH
Q 037927 1 MSNLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPGFAL 42 (329)
Q Consensus 1 ~~~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~F~~ 42 (329)
+..||.++...||..|+.+++.+++.||+.|+.+..+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 457999999999999999999999999999999999766544
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.41 E-value=0.094 Score=32.40 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=31.5
Q ss_pred eeEECceeeEEeecccc-C-CceEEEEEECCCcccccc-CCC
Q 037927 223 GTLVNESLHWLTNNQCE-F-GMFGITAFDLATDKFSRV-PKP 261 (329)
Q Consensus 223 ~v~~~G~lywl~~~~~~-~-~~~~i~~fD~~~~~~~~i-~lP 261 (329)
.+.++|.+|.+++ ... . ....+..||+.+++|..+ ++|
T Consensus 7 ~~~~~~~iyv~GG-~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 7 AVVVGNKIYVIGG-YDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEETTEEEEEEE-BESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEECCEEEEEee-ecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 7899999999998 654 2 278999999999999876 444
No 39
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=94.29 E-value=0.27 Score=38.16 Aligned_cols=70 Identities=27% Similarity=0.486 Sum_probs=50.6
Q ss_pred eEEEEEECCCc--cccccCCCCCCCCC-----------ceeEEEEECCcEEEEEc-----------CCEEEEEEeeeC-C
Q 037927 243 FGITAFDLATD--KFSRVPKPDFDYAH-----------QAMGLGVVGGRLCLLAL-----------GANVELWVMKEY-G 297 (329)
Q Consensus 243 ~~i~~fD~~~~--~~~~i~lP~~~~~~-----------~~~~l~~~~g~L~~~~~-----------~~~l~vW~l~~~-~ 297 (329)
..|+.+|+-.+ .++.++||...... ....+++.+|+|-++.. +.++.+|.|... +
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 46788888865 66778888755221 23467778999988887 226899999985 2
Q ss_pred CccceEEeeccceEEecCC
Q 037927 298 VKCSWQKHYCLGISISADD 316 (329)
Q Consensus 298 ~~~~W~~~~~~~~~i~~~~ 316 (329)
....|++. +++++.+
T Consensus 86 ~~~~W~~d----~~v~~~d 100 (131)
T PF07762_consen 86 SSWEWKKD----CEVDLSD 100 (131)
T ss_pred CCCCEEEe----EEEEhhh
Confidence 24679999 9888755
No 40
>PF13964 Kelch_6: Kelch motif
Probab=94.28 E-value=0.099 Score=32.93 Aligned_cols=37 Identities=16% Similarity=0.394 Sum_probs=26.6
Q ss_pred CeEEEccccccEEEEEcCCceEEEEcCcccceeeCCCCCCC
Q 037927 99 MVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDA 139 (329)
Q Consensus 99 ~~~~~~s~~Glll~~~~~~~~~~V~NP~T~~~~~LP~~~~~ 139 (329)
.+++++..++. . .....+.++||.|++|..+|+++..
T Consensus 13 ~iyv~GG~~~~---~-~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 13 KIYVFGGYDNS---G-KYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred EEEEECCCCCC---C-CccccEEEEcCCCCcEEECCCCCCC
Confidence 34555544443 1 3457899999999999999988754
No 41
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.06 E-value=0.64 Score=41.86 Aligned_cols=120 Identities=17% Similarity=0.211 Sum_probs=81.8
Q ss_pred cceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECc-eeeEEeeccccC-----------------------
Q 037927 185 DIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNE-SLHWLTNNQCEF----------------------- 240 (329)
Q Consensus 185 ~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~----------------------- 240 (329)
...+..|++.+++|..++. ..|... .+.+ .+..++ .+|+.++ ....
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t---~sP~gl-----~G~~-~~~~~~~~i~f~GG-vn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDT---RSPTGL-----VGAS-TFSLNGTKIYFFGG-VNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred eeeeEEecCCCChhheecc---cccccc-----ccce-eEecCCceEEEEcc-ccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 4567888999999999986 356655 4444 455555 7777764 3211
Q ss_pred ----C--------ceEEEEEECCCcccccc-CCCCCCCCCceeEEEEECCcEEEEEc-----CCEEEEEEeeeCCCccce
Q 037927 241 ----G--------MFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVVGGRLCLLAL-----GANVELWVMKEYGVKCSW 302 (329)
Q Consensus 241 ----~--------~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~g~L~~~~~-----~~~l~vW~l~~~~~~~~W 302 (329)
+ ...+++||+.+++|+.. ..|.-.... ..++..+++|.++.. -++..+|+.+-.+.+..|
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG--sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w 259 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG--SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKW 259 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcCcCcccCccC--cceeecCCeEEEEcceecCCccccceeEEEeccCceee
Confidence 0 44789999999999988 577665431 233344667888877 456677777655556789
Q ss_pred EEeeccceEEecCC
Q 037927 303 QKHYCLGISISADD 316 (329)
Q Consensus 303 ~~~~~~~~~i~~~~ 316 (329)
.+...+|..+.-..
T Consensus 260 ~~l~~lp~~~~~~~ 273 (381)
T COG3055 260 LKLSDLPAPIGSNK 273 (381)
T ss_pred eeccCCCCCCCCCc
Confidence 99977777776554
No 42
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.85 E-value=3.8 Score=35.64 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=61.6
Q ss_pred cccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCcccc-ccCCCCCCCCC---------ceeEEEEECC
Q 037927 208 IHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFS-RVPKPDFDYAH---------QAMGLGVVGG 277 (329)
Q Consensus 208 ~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~---------~~~~l~~~~g 277 (329)
+|... .+.. .|+.||.+|+... . ...|+.||+.+++-. ...||.....+ ....+++-+.
T Consensus 65 Lp~~~-----~GtG-~vVYngslYY~~~-~----s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~ 133 (250)
T PF02191_consen 65 LPYPW-----QGTG-HVVYNGSLYYNKY-N----SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDEN 133 (250)
T ss_pred Eecee-----ccCC-eEEECCcEEEEec-C----CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCC
Confidence 67655 4444 7889999999776 4 679999999999888 67888765431 3477888888
Q ss_pred cEEEEEc----CCEEEEEEeeeC--CCccceE
Q 037927 278 RLCLLAL----GANVELWVMKEY--GVKCSWQ 303 (329)
Q Consensus 278 ~L~~~~~----~~~l~vW~l~~~--~~~~~W~ 303 (329)
.|.++-. ...+.|-.|+.. .....|.
T Consensus 134 GLWvIYat~~~~g~ivvskld~~tL~v~~tw~ 165 (250)
T PF02191_consen 134 GLWVIYATEDNNGNIVVSKLDPETLSVEQTWN 165 (250)
T ss_pred CEEEEEecCCCCCcEEEEeeCcccCceEEEEE
Confidence 8988877 335888888753 2334564
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=91.69 E-value=0.4 Score=29.97 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=29.4
Q ss_pred eeEECceeeEEeecc--cc--CCceEEEEEECCCccccccC
Q 037927 223 GTLVNESLHWLTNNQ--CE--FGMFGITAFDLATDKFSRVP 259 (329)
Q Consensus 223 ~v~~~G~lywl~~~~--~~--~~~~~i~~fD~~~~~~~~i~ 259 (329)
.+.++|++|..++ . .. .....+..||+++.+|..+.
T Consensus 7 ~~~~~~kiyv~GG-~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 7 AVVLDGKIYVFGG-YGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred EEEECCEEEEECC-cccCCCCcccceeEEEECCCCEEeecC
Confidence 7899999999998 6 11 12678999999999998774
No 44
>smart00612 Kelch Kelch domain.
Probab=91.63 E-value=0.34 Score=29.44 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=20.6
Q ss_pred ccceEEEEEcCCCceEEecccCccccccc
Q 037927 184 IDIQGIVFTAKTNSWKKVEHSFGSIHCCC 212 (329)
Q Consensus 184 ~~~~~~vyss~t~~W~~~~~~~~~~p~~~ 212 (329)
....+++|+.+++.|+..+. ||...
T Consensus 13 ~~~~v~~yd~~~~~W~~~~~----~~~~r 37 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLPS----MPTPR 37 (47)
T ss_pred eeeeEEEECCCCCeEccCCC----CCCcc
Confidence 35678999999999999887 77655
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=90.21 E-value=0.19 Score=46.20 Aligned_cols=37 Identities=38% Similarity=0.613 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHhcCCcchhhhhhhchHhhHhhcCChh
Q 037927 3 NLPDDVLIEVLSRLPVKSLLRFKCACKQWLSLISDPG 39 (329)
Q Consensus 3 ~LP~Dll~eIL~rLp~~~l~r~~~VcK~W~~li~~~~ 39 (329)
.||.+++..||+-|..++++|++.+|+.|+-+..+..
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 6999999999999999999999999999999887643
No 46
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=88.59 E-value=0.8 Score=28.46 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=22.1
Q ss_pred eeEE-CceeeEEeeccccC--CceEEEEEECCCcccccc
Q 037927 223 GTLV-NESLHWLTNNQCEF--GMFGITAFDLATDKFSRV 258 (329)
Q Consensus 223 ~v~~-~G~lywl~~~~~~~--~~~~i~~fD~~~~~~~~i 258 (329)
.+.+ ++.+|..++ .... ....+..||+++++|+.+
T Consensus 7 ~~~~~~~~i~v~GG-~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 7 AVSIGDNSIYVFGG-RDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEE-TTEEEEE---EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEeCCeEEEECC-CCCCCcccCCEEEEECCCCEEEEC
Confidence 5566 588888887 5442 256889999999999988
No 47
>smart00284 OLF Olfactomedin-like domains.
Probab=88.36 E-value=4.1 Score=35.43 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=58.5
Q ss_pred cccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCcccccc-CCCCCCCC---------CceeEEEEECC
Q 037927 208 IHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRV-PKPDFDYA---------HQAMGLGVVGG 277 (329)
Q Consensus 208 ~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~---------~~~~~l~~~~g 277 (329)
+|... .+.. .|+.||.+|+... . ...|+-||+.+++-... .||...-. ...+.+++-+.
T Consensus 70 Lp~~~-----~GtG-~VVYngslYY~~~-~----s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~ 138 (255)
T smart00284 70 LPHAG-----QGTG-VVVYNGSLYFNKF-N----SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDEN 138 (255)
T ss_pred CCCcc-----cccc-EEEECceEEEEec-C----CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCC
Confidence 67655 3444 8999999999665 3 46899999999988644 57753211 13477888888
Q ss_pred cEEEEEc----CCEEEEEEeeeC--CCccceEE
Q 037927 278 RLCLLAL----GANVELWVMKEY--GVKCSWQK 304 (329)
Q Consensus 278 ~L~~~~~----~~~l~vW~l~~~--~~~~~W~~ 304 (329)
.|.++-. ...|.|-.|+.. .....|.-
T Consensus 139 GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T 171 (255)
T smart00284 139 GLWVIYATEQNAGKIVISKLNPATLTIENTWIT 171 (255)
T ss_pred ceEEEEeccCCCCCEEEEeeCcccceEEEEEEc
Confidence 8888866 456777777643 22344553
No 48
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=86.62 E-value=2 Score=26.22 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.6
Q ss_pred CcccceEEEEEcCCCceEEecc
Q 037927 182 RCIDIQGIVFTAKTNSWKKVEH 203 (329)
Q Consensus 182 ~~~~~~~~vyss~t~~W~~~~~ 203 (329)
......+++|+..+++|+.++.
T Consensus 24 ~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 24 NQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp SSBEEEEEEEETTTTEEEEEEE
T ss_pred CceeeeEEEEeCCCCEEEEcCC
Confidence 4567899999999999999987
No 49
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=86.27 E-value=11 Score=35.95 Aligned_cols=160 Identities=15% Similarity=0.246 Sum_probs=78.8
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCCc
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTNS 197 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 197 (329)
+++.|+|-+|++|.. |........ ....++|.+| .-++++++.. ..-+.+.-+.|.+....
T Consensus 57 DELHvYNTatnqWf~-PavrGDiPp-gcAA~Gfvcd----GtrilvFGGM-------------vEYGkYsNdLYELQasR 117 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDIPP-GCAAFGFVCD----GTRILVFGGM-------------VEYGKYSNDLYELQASR 117 (830)
T ss_pred hhhhhhccccceeec-chhcCCCCC-chhhcceEec----CceEEEEccE-------------eeeccccchHHHhhhhh
Confidence 578999999999974 333222211 2234455555 3355555533 23356677788877665
Q ss_pred --eEEeccc---CcccccccccccccCCCceeEECceeeEEeeccccCC------------ceEEEEEECCCc--ccccc
Q 037927 198 --WKKVEHS---FGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG------------MFGITAFDLATD--KFSRV 258 (329)
Q Consensus 198 --W~~~~~~---~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~------------~~~i~~fD~~~~--~~~~i 258 (329)
|+.+... .-.+|+.. . .+ + -++.+.+.|..++ -.++. +.+++-+-.... -|...
T Consensus 118 WeWkrlkp~~p~nG~pPCPR---l-GH-S-Fsl~gnKcYlFGG-LaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip 190 (830)
T KOG4152|consen 118 WEWKRLKPKTPKNGPPPCPR---L-GH-S-FSLVGNKCYLFGG-LANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIP 190 (830)
T ss_pred hhHhhcCCCCCCCCCCCCCc---c-Cc-e-eEEeccEeEEecc-ccccccCcccccchhhcceEEEEeccCCceEEEecc
Confidence 5555320 00112221 1 11 1 4556677887775 33221 334444443443 22211
Q ss_pred ----CCCCCCCCCceeEEEEEC-Cc--EEEEEc--CCEE-EEEEeeeCCCccceEEe
Q 037927 259 ----PKPDFDYAHQAMGLGVVG-GR--LCLLAL--GANV-ELWVMKEYGVKCSWQKH 305 (329)
Q Consensus 259 ----~lP~~~~~~~~~~l~~~~-g~--L~~~~~--~~~l-~vW~l~~~~~~~~W~~~ 305 (329)
.+|...+.+....-.+-| ++ +++... +.++ .+|.|+- +...|.|.
T Consensus 191 ~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl--~Tl~W~kp 245 (830)
T KOG4152|consen 191 ITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDL--DTLTWNKP 245 (830)
T ss_pred cccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEec--ceeecccc
Confidence 344433332111222333 23 344333 4454 6899986 34679986
No 50
>PLN02772 guanylate kinase
Probab=86.04 E-value=4.3 Score=37.64 Aligned_cols=71 Identities=10% Similarity=0.148 Sum_probs=51.5
Q ss_pred eeEECceeeEEeeccccCC--ceEEEEEECCCccccccC----CCCCCCCCceeEEEEECCcEEEEEc--CCEEEEEEee
Q 037927 223 GTLVNESLHWLTNNQCEFG--MFGITAFDLATDKFSRVP----KPDFDYAHQAMGLGVVGGRLCLLAL--GANVELWVMK 294 (329)
Q Consensus 223 ~v~~~G~lywl~~~~~~~~--~~~i~~fD~~~~~~~~i~----lP~~~~~~~~~~l~~~~g~L~~~~~--~~~l~vW~l~ 294 (329)
.|.++.++|..++ ....+ ...+..||..+.+|+... .|.... .+-.....+++|.++.. ...-.+|-|+
T Consensus 30 av~igdk~yv~GG-~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~--GhSa~v~~~~rilv~~~~~~~~~~~w~l~ 106 (398)
T PLN02772 30 SVTIGDKTYVIGG-NHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK--GYSAVVLNKDRILVIKKGSAPDDSIWFLE 106 (398)
T ss_pred eEEECCEEEEEcc-cCCCccccceEEEEECCCCcEecccccCCCCCCCC--cceEEEECCceEEEEeCCCCCccceEEEE
Confidence 8899999999987 44321 568999999999998652 233332 22344455799999988 7778999997
Q ss_pred eC
Q 037927 295 EY 296 (329)
Q Consensus 295 ~~ 296 (329)
-+
T Consensus 107 ~~ 108 (398)
T PLN02772 107 VD 108 (398)
T ss_pred cC
Confidence 54
No 51
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=85.59 E-value=23 Score=32.35 Aligned_cols=85 Identities=19% Similarity=0.344 Sum_probs=52.0
Q ss_pred eEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCccc-----------
Q 037927 187 QGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKF----------- 255 (329)
Q Consensus 187 ~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~----------- 255 (329)
...-|+-.+..|+.... ..+|+. +. +.|+..-=-|++- ...+....|-++|+.+..-
T Consensus 200 GTysfDt~~~~W~~~Gd--W~LPF~-------G~--a~y~~el~~W~Gl-s~~~~~~~lca~dv~~~~~~~~pp~~~~~~ 267 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGD--WMLPFH-------GQ--AEYVPELDLWFGL-SSDGGGGHLCACDVSSADSASPPPEWKLTW 267 (342)
T ss_pred EEEEEEcCCcceeeccc--eecCcC-------Cc--cEECCCcCeEEEe-ccCCCCcEEEEEeccccccCCCCCcceecc
Confidence 35556666789999987 344442 22 6777666678887 6543235899999887322
Q ss_pred cccCCCCCCCCCceeEEEEE-CCcEEEEEc
Q 037927 256 SRVPKPDFDYAHQAMGLGVV-GGRLCLLAL 284 (329)
Q Consensus 256 ~~i~lP~~~~~~~~~~l~~~-~g~L~~~~~ 284 (329)
..+..|.. .......|+.+ +|+.|++..
T Consensus 268 ~~l~~~~~-~~~~~~~Lv~lG~grFCi~~~ 296 (342)
T PF07893_consen 268 EELFPPEE-WRHVGATLVYLGSGRFCIVEF 296 (342)
T ss_pred cccccccc-ccccCceEEECCCCCEEEEEE
Confidence 22233322 11134567766 588999885
No 52
>smart00612 Kelch Kelch domain.
Probab=83.81 E-value=3.9 Score=24.50 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=17.2
Q ss_pred ceEEEEEECCCcccccc-CCCCC
Q 037927 242 MFGITAFDLATDKFSRV-PKPDF 263 (329)
Q Consensus 242 ~~~i~~fD~~~~~~~~i-~lP~~ 263 (329)
...+..||+.+.+|+.+ ++|..
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCc
Confidence 56789999999999877 45443
No 53
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=82.18 E-value=3.9 Score=25.34 Aligned_cols=38 Identities=16% Similarity=0.434 Sum_probs=27.2
Q ss_pred eEEEEECCcEEEEEc-------CCEEEEEEeeeCCCccceEEeeccc
Q 037927 270 MGLGVVGGRLCLLAL-------GANVELWVMKEYGVKCSWQKHYCLG 309 (329)
Q Consensus 270 ~~l~~~~g~L~~~~~-------~~~l~vW~l~~~~~~~~W~~~~~~~ 309 (329)
...++.+++|+++.. ...-.+|.++.. +..|+++.+||
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~--t~~W~~~~~~g 49 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE--TNQWTELSPMG 49 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECC--CCEEeecCCCC
Confidence 355678999999876 445578888863 46799985554
No 54
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=80.72 E-value=3.1 Score=39.38 Aligned_cols=143 Identities=8% Similarity=-0.043 Sum_probs=85.1
Q ss_pred EEEEcCcccceeeCCCCCCCCCC-----CCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcC
Q 037927 120 IFIWNPSTGAYTKLPADPDATYD-----YDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAK 194 (329)
Q Consensus 120 ~~V~NP~T~~~~~LP~~~~~~~~-----~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~ 194 (329)
+..--|.|-.|.++|+....... .....+-+.+++.++.-.+..... +......+.+|+-+
T Consensus 231 ~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd--------------G~~~l~DFW~Y~v~ 296 (723)
T KOG2437|consen 231 YISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD--------------GTQDLADFWAYSVK 296 (723)
T ss_pred hhhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc--------------cchhHHHHHhhcCC
Confidence 44556788889998887743211 234445567777666544443331 34455678899999
Q ss_pred CCceEEecccCcccccccccccccCCCceeEEC--ceeeEEeeccccC-------CceEEEEEECCCccccccCCCCCCC
Q 037927 195 TNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVN--ESLHWLTNNQCEF-------GMFGITAFDLATDKFSRVPKPDFDY 265 (329)
Q Consensus 195 t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~--G~lywl~~~~~~~-------~~~~i~~fD~~~~~~~~i~lP~~~~ 265 (329)
.+.|..+... ...|-.. . +++ .|.-- -++|.++. .-.. ...-+-.||..+..|..+..-....
T Consensus 297 e~~W~~iN~~-t~~PG~R---s-CHR--MVid~S~~KLYLlG~-Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~d 368 (723)
T KOG2437|consen 297 ENQWTCINRD-TEGPGAR---S-CHR--MVIDISRRKLYLLGR-YLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAAD 368 (723)
T ss_pred cceeEEeecC-CCCCcch---h-hhh--hhhhhhHhHHhhhhh-ccccccccccccccceEEEecCCceeEEeccccccc
Confidence 9999998751 1133322 1 222 33322 36777664 3221 2668999999999999886544422
Q ss_pred CC----ceeEEEEECCc--EEEEEc
Q 037927 266 AH----QAMGLGVVGGR--LCLLAL 284 (329)
Q Consensus 266 ~~----~~~~l~~~~g~--L~~~~~ 284 (329)
.+ +...+++.+++ +|+.+.
T Consensus 369 GGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 369 GGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred CCcceeecceeeEecCcceEEEecC
Confidence 21 34456666555 777765
No 55
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.58 E-value=32 Score=30.37 Aligned_cols=110 Identities=18% Similarity=0.171 Sum_probs=69.8
Q ss_pred CceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCC
Q 037927 117 YREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTN 196 (329)
Q Consensus 117 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~ 196 (329)
...+...||+++.-..+|.+...... .. ..+.|+.. -+++. ......+..|+..+.
T Consensus 209 gnaiaridp~~~~aev~p~P~~~~~g--sR--riwsdpig----~~wit----------------twg~g~l~rfdPs~~ 264 (353)
T COG4257 209 GNAIARIDPFAGHAEVVPQPNALKAG--SR--RIWSDPIG----RAWIT----------------TWGTGSLHRFDPSVT 264 (353)
T ss_pred ccceEEcccccCCcceecCCCccccc--cc--ccccCccC----cEEEe----------------ccCCceeeEeCcccc
Confidence 45677889999977788887764322 11 23434432 23333 234667888999888
Q ss_pred ceEEecccCcccccccccccccCCCceeEECce-eeEEeeccccCCceEEEEEECCCccccccCCCCCCC
Q 037927 197 SWKKVEHSFGSIHCCCEARNLQGRPMGTLVNES-LHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDY 265 (329)
Q Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~ 265 (329)
+|++-+ +|-.- .....+++|.. .-|+.. -. .+.|.-||+++++|+++++|....
T Consensus 265 sW~eyp-----LPgs~------arpys~rVD~~grVW~se-a~---agai~rfdpeta~ftv~p~pr~n~ 319 (353)
T COG4257 265 SWIEYP-----LPGSK------ARPYSMRVDRHGRVWLSE-AD---AGAIGRFDPETARFTVLPIPRPNS 319 (353)
T ss_pred cceeee-----CCCCC------CCcceeeeccCCcEEeec-cc---cCceeecCcccceEEEecCCCCCC
Confidence 998866 34322 11225555532 345543 22 679999999999999999987764
No 56
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=78.68 E-value=1.7 Score=26.93 Aligned_cols=21 Identities=29% Similarity=0.744 Sum_probs=14.1
Q ss_pred CceEEEEcCcccceeeCCCCC
Q 037927 117 YREIFIWNPSTGAYTKLPADP 137 (329)
Q Consensus 117 ~~~~~V~NP~T~~~~~LP~~~ 137 (329)
..++.++|+.|++|.+||++|
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp ---EEEEETTTTEEEE--SS-
T ss_pred cCCEEEEECCCCEEEECCCCC
Confidence 347899999999999998776
No 57
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=73.91 E-value=4 Score=25.31 Aligned_cols=25 Identities=12% Similarity=0.422 Sum_probs=20.7
Q ss_pred CceEEEEcCcccceeeCCCCCCCCC
Q 037927 117 YREIFIWNPSTGAYTKLPADPDATY 141 (329)
Q Consensus 117 ~~~~~V~NP~T~~~~~LP~~~~~~~ 141 (329)
..+++++|+.|++|..++..+..+.
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~~R~ 42 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPPPRS 42 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCCCcc
Confidence 3578999999999999987776654
No 58
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=73.79 E-value=53 Score=27.55 Aligned_cols=101 Identities=19% Similarity=0.092 Sum_probs=51.8
Q ss_pred cceEEEEEcCCC--ceEEecccCccccccccc--ccccCCCceeEECceeeEEeeccccCCceEEEEEECCCcc--cccc
Q 037927 185 DIQGIVFTAKTN--SWKKVEHSFGSIHCCCEA--RNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDK--FSRV 258 (329)
Q Consensus 185 ~~~~~vyss~t~--~W~~~~~~~~~~p~~~~~--~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~--~~~i 258 (329)
...+..++.+++ .|+.... .+..... .........+..+|.+|.... ...++++|.++.+ |+ .
T Consensus 131 ~g~l~~~d~~tG~~~w~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~g~~~~~d~~tg~~~w~-~ 199 (238)
T PF13360_consen 131 SGKLVALDPKTGKLLWKYPVG----EPRGSSPISSFSDINGSPVISDGRVYVSSG------DGRVVAVDLATGEKLWS-K 199 (238)
T ss_dssp CSEEEEEETTTTEEEEEEESS----TT-SS--EEEETTEEEEEECCTTEEEEECC------TSSEEEEETTTTEEEEE-E
T ss_pred cCcEEEEecCCCcEEEEeecC----CCCCCcceeeecccccceEEECCEEEEEcC------CCeEEEEECCCCCEEEE-e
Confidence 456677887777 5766544 3221100 000011225566787887665 3347888999987 42 2
Q ss_pred CCCCCCCCCceeEEEEECCcEEEEEcCCEEEEEEeeeCCCccceE
Q 037927 259 PKPDFDYAHQAMGLGVVGGRLCLLALGANVELWVMKEYGVKCSWQ 303 (329)
Q Consensus 259 ~lP~~~~~~~~~~l~~~~g~L~~~~~~~~l~vW~l~~~~~~~~W~ 303 (329)
+ +... .......++.|++.....++..|.++. .+..|+
T Consensus 200 ~-~~~~----~~~~~~~~~~l~~~~~~~~l~~~d~~t--G~~~W~ 237 (238)
T PF13360_consen 200 P-ISGI----YSLPSVDGGTLYVTSSDGRLYALDLKT--GKVVWQ 237 (238)
T ss_dssp C-SS-E----CECEECCCTEEEEEETTTEEEEEETTT--TEEEEE
T ss_pred c-CCCc----cCCceeeCCEEEEEeCCCEEEEEECCC--CCEEeE
Confidence 2 2221 111334455565555466666666654 234565
No 59
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=73.20 E-value=5.3 Score=23.52 Aligned_cols=24 Identities=21% Similarity=0.026 Sum_probs=18.8
Q ss_pred eeEECceeeEEeeccccCCceEEEEEECCC
Q 037927 223 GTLVNESLHWLTNNQCEFGMFGITAFDLAT 252 (329)
Q Consensus 223 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~ 252 (329)
+++.+|.+|..+. ...+.+||.++
T Consensus 17 ~~v~~g~vyv~~~------dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTG------DGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-T------TSEEEEEETT-
T ss_pred CEEECCEEEEEcC------CCEEEEEeCCC
Confidence 6888999999877 78999999875
No 60
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.06 E-value=20 Score=32.58 Aligned_cols=87 Identities=10% Similarity=0.159 Sum_probs=57.6
Q ss_pred cceEEEEEcCC--CceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCC------ceEEEEEECCCcccc
Q 037927 185 DIQGIVFTAKT--NSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFG------MFGITAFDLATDKFS 256 (329)
Q Consensus 185 ~~~~~vyss~t--~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~------~~~i~~fD~~~~~~~ 256 (329)
...+...+++. ..|+.++. +|-.. . ...-.+.++|.||..+. ..... .+.+..||+.+++|.
T Consensus 57 G~afy~ldL~~~~k~W~~~a~----FpG~~---r--nqa~~a~~~~kLyvFgG-~Gk~~~~~~~~~nd~Y~y~p~~nsW~ 126 (381)
T COG3055 57 GTAFYVLDLKKPGKGWTKIAD----FPGGA---R--NQAVAAVIGGKLYVFGG-YGKSVSSSPQVFNDAYRYDPSTNSWH 126 (381)
T ss_pred CccceehhhhcCCCCceEccc----CCCcc---c--ccchheeeCCeEEEeec-cccCCCCCceEeeeeEEecCCCChhh
Confidence 34455555553 48999998 77665 2 22227899999999887 55321 568899999999999
Q ss_pred cc--CCCCCCCCCceeEEEEECC-cEEEEEc
Q 037927 257 RV--PKPDFDYAHQAMGLGVVGG-RLCLLAL 284 (329)
Q Consensus 257 ~i--~lP~~~~~~~~~~l~~~~g-~L~~~~~ 284 (329)
.+ ..|..... ..-...++ ++++...
T Consensus 127 kl~t~sP~gl~G---~~~~~~~~~~i~f~GG 154 (381)
T COG3055 127 KLDTRSPTGLVG---ASTFSLNGTKIYFFGG 154 (381)
T ss_pred eecccccccccc---ceeEecCCceEEEEcc
Confidence 87 56666432 23334454 6666553
No 61
>PF13013 F-box-like_2: F-box-like domain
Probab=67.74 E-value=5.1 Score=29.95 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHhcCCcchhhhhhhchH
Q 037927 2 SNLPDDVLIEVLSRLPVKSLLRFKCACK 29 (329)
Q Consensus 2 ~~LP~Dll~eIL~rLp~~~l~r~~~VcK 29 (329)
.+||+||+..|+..-....+...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4699999999999999888877766666
No 62
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=64.36 E-value=15 Score=20.15 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=19.0
Q ss_pred eEECceeeEEeeccccCCceEEEEEECCCcc
Q 037927 224 TLVNESLHWLTNNQCEFGMFGITAFDLATDK 254 (329)
Q Consensus 224 v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~ 254 (329)
+..+|.+|.-.. ...+.++|.++.+
T Consensus 3 ~~~~~~v~~~~~------~g~l~a~d~~~G~ 27 (33)
T smart00564 3 VLSDGTVYVGST------DGTLYALDAKTGE 27 (33)
T ss_pred EEECCEEEEEcC------CCEEEEEEcccCc
Confidence 456778887666 6899999987654
No 63
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=56.80 E-value=50 Score=24.74 Aligned_cols=43 Identities=12% Similarity=0.233 Sum_probs=27.9
Q ss_pred ceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEE
Q 037927 118 REIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYF 165 (329)
Q Consensus 118 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 165 (329)
-.+.+.||.|+.|. |...... ......+-+++..+.|+||...
T Consensus 9 A~Vm~~d~~tk~W~--P~~~~~~---~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWV--PAGGGSQ---GFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEE--cCCCCCC---CcceEEEEEcCCCCEEEEEEee
Confidence 46789999999854 4433111 2223445567788899998765
No 64
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=50.58 E-value=1.1e+02 Score=26.58 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=58.8
Q ss_pred ccceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCC----ccccccC
Q 037927 184 IDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLAT----DKFSRVP 259 (329)
Q Consensus 184 ~~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~----~~~~~i~ 259 (329)
+.....+|+..++++|.+.. .... . +... .+.-||.+.-.++ ...+ ...+-.|++.+ ..|. +
T Consensus 44 ~~a~s~~yD~~tn~~rpl~v-----~td~---F-CSgg-~~L~dG~ll~tGG-~~~G-~~~ir~~~p~~~~~~~~w~--e 109 (243)
T PF07250_consen 44 GPAHSVEYDPNTNTFRPLTV-----QTDT---F-CSGG-AFLPDGRLLQTGG-DNDG-NKAIRIFTPCTSDGTCDWT--E 109 (243)
T ss_pred ceEEEEEEecCCCcEEeccC-----CCCC---c-ccCc-CCCCCCCEEEeCC-CCcc-ccceEEEecCCCCCCCCce--E
Confidence 36678899999999999874 2222 1 3332 6777898887766 5432 56777888876 3443 4
Q ss_pred CCCCCCCC-ceeEEEEE-CCcEEEEEc--CCEEEEEE
Q 037927 260 KPDFDYAH-QAMGLGVV-GGRLCLLAL--GANVELWV 292 (329)
Q Consensus 260 lP~~~~~~-~~~~l~~~-~g~L~~~~~--~~~l~vW~ 292 (329)
.+..+... +.+....+ ||++.++.. ..+.+.|=
T Consensus 110 ~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P 146 (243)
T PF07250_consen 110 SPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWP 146 (243)
T ss_pred CcccccCCCccccceECCCCCEEEEeCcCCCcccccC
Confidence 44333222 33444544 899988887 34444443
No 65
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=50.37 E-value=75 Score=27.50 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=55.5
Q ss_pred CceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCc-cccccCCCCCCCCC-------
Q 037927 196 NSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATD-KFSRVPKPDFDYAH------- 267 (329)
Q Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~-~~~~i~lP~~~~~~------- 267 (329)
+.|...-. +|... .+.. .|+.+|.+|+... . ...|+-||+.++ +.....+|.....+
T Consensus 56 ~~~~~~~~----lp~~~-----~gTg-~VVynGs~yynk~-~----t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~ 120 (249)
T KOG3545|consen 56 GRKAEKYR----LPYSW-----DGTG-HVVYNGSLYYNKA-G----TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWG 120 (249)
T ss_pred cCcceEEe----CCCCc-----cccc-eEEEcceEEeecc-C----CcceEEEEeecceeeeeeeccccccCCCcccccC
Confidence 45655554 77776 3444 8999999999765 3 568999999984 33444666544321
Q ss_pred --ceeEEEEECCcEEEEEc----CCEEEEEEeee
Q 037927 268 --QAMGLGVVGGRLCLLAL----GANVELWVMKE 295 (329)
Q Consensus 268 --~~~~l~~~~g~L~~~~~----~~~l~vW~l~~ 295 (329)
....+++.+..|.++-. ...+.|-.|+.
T Consensus 121 g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp 154 (249)
T KOG3545|consen 121 GHSDIDLAVDENGLWVIYATPENAGTIVLSKLDP 154 (249)
T ss_pred CCccccceecccceeEEecccccCCcEEeeccCH
Confidence 23567777777777766 44555566654
No 66
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=50.00 E-value=1.7e+02 Score=25.33 Aligned_cols=131 Identities=11% Similarity=0.057 Sum_probs=68.9
Q ss_pred eEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCC---
Q 037927 119 EIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKT--- 195 (329)
Q Consensus 119 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t--- 195 (329)
.-.+|||.|++++.++....... .+-.+-+. + +++..+. ...+...+.+|+..+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FC------Sgg~~L~d-G--~ll~tGG--------------~~~G~~~ir~~~p~~~~~ 103 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFC------SGGAFLPD-G--RLLQTGG--------------DNDGNKAIRIFTPCTSDG 103 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcc------cCcCCCCC-C--CEEEeCC--------------CCccccceEEEecCCCCC
Confidence 45799999999999876543321 11122221 2 3444441 223556777887654
Q ss_pred -CceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCccccccCC--CCCC----CCCc
Q 037927 196 -NSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPK--PDFD----YAHQ 268 (329)
Q Consensus 196 -~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i~l--P~~~----~~~~ 268 (329)
..|.+.... |-... + +... ...-||.+..+++ ... ....-++........+.+ .... ....
T Consensus 104 ~~~w~e~~~~---m~~~R---W-YpT~-~~L~DG~vlIvGG-~~~---~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nl 171 (243)
T PF07250_consen 104 TCDWTESPND---MQSGR---W-YPTA-TTLPDGRVLIVGG-SNN---PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNL 171 (243)
T ss_pred CCCceECccc---ccCCC---c-cccc-eECCCCCEEEEeC-cCC---CcccccCCccCCCCceeeecchhhhccCcccc
Confidence 579887651 44333 3 4443 6777999998888 531 122222221211112221 1111 1113
Q ss_pred eeEEEEE-CCcEEEEEc
Q 037927 269 AMGLGVV-GGRLCLLAL 284 (329)
Q Consensus 269 ~~~l~~~-~g~L~~~~~ 284 (329)
.+.+..+ +|+|++...
T Consensus 172 YP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 172 YPFVHLLPDGNLFIFAN 188 (243)
T ss_pred CceEEEcCCCCEEEEEc
Confidence 4555554 899998885
No 67
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=48.96 E-value=2.1e+02 Score=26.10 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=33.8
Q ss_pred eeEECceeeEEeeccccCCceEEEEEECCCc--cccccCCCCCCCCCceeEEEEECCcEEEEEcCCEEEEEE
Q 037927 223 GTLVNESLHWLTNNQCEFGMFGITAFDLATD--KFSRVPKPDFDYAHQAMGLGVVGGRLCLLALGANVELWV 292 (329)
Q Consensus 223 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~--~~~~i~lP~~~~~~~~~~l~~~~g~L~~~~~~~~l~vW~ 292 (329)
++..+|.+|.... ...+.++|..+. .|..-.++.... ......++.|++......+.++.
T Consensus 275 p~~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~~~~~~~~~----ssp~i~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 275 PAVDDNRLYVTDA------DGVVVALDRRSGSELWKNDELKYRQL----TAPAVVGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred ceEeCCEEEEECC------CCeEEEEECCCCcEEEccccccCCcc----ccCEEECCEEEEEeCCCEEEEEE
Confidence 5677899998766 679999999765 454433333221 11223455555544433444443
No 68
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=47.05 E-value=92 Score=28.59 Aligned_cols=72 Identities=11% Similarity=0.009 Sum_probs=44.8
Q ss_pred eeEECceeeEEeeccccCCceEEEEEECCCcc--ccccCCC-CCCCCCceeEEEEECCcEEEEEcCCEEEEEEeeeCCCc
Q 037927 223 GTLVNESLHWLTNNQCEFGMFGITAFDLATDK--FSRVPKP-DFDYAHQAMGLGVVGGRLCLLALGANVELWVMKEYGVK 299 (329)
Q Consensus 223 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~--~~~i~lP-~~~~~~~~~~l~~~~g~L~~~~~~~~l~vW~l~~~~~~ 299 (329)
+++.+|++|.... ...|.+||+.+.+ |+.-... ... ...-+...+|+|++-.... .++.+++...+
T Consensus 64 ~~~~dg~v~~~~~------~G~i~A~d~~~g~~~W~~~~~~~~~~---~~~~~~~~~G~i~~g~~~g--~~y~ld~~~G~ 132 (370)
T COG1520 64 PADGDGTVYVGTR------DGNIFALNPDTGLVKWSYPLLGAVAQ---LSGPILGSDGKIYVGSWDG--KLYALDASTGT 132 (370)
T ss_pred cEeeCCeEEEecC------CCcEEEEeCCCCcEEecccCcCccee---ccCceEEeCCeEEEecccc--eEEEEECCCCc
Confidence 4999999999866 5699999999876 6544433 111 1122233377766666522 67777763334
Q ss_pred cceEEe
Q 037927 300 CSWQKH 305 (329)
Q Consensus 300 ~~W~~~ 305 (329)
..|+..
T Consensus 133 ~~W~~~ 138 (370)
T COG1520 133 LVWSRN 138 (370)
T ss_pred EEEEEe
Confidence 567665
No 69
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=45.89 E-value=1.8e+02 Score=24.26 Aligned_cols=106 Identities=19% Similarity=0.114 Sum_probs=56.6
Q ss_pred ccccEEEEEcCCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCccc
Q 037927 106 CHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCID 185 (329)
Q Consensus 106 ~~Glll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~ 185 (329)
.+|.+.+. .....++.+|+.||+...--..+.... . .. .. + .-+|++.. . .
T Consensus 35 ~~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~~~~~~--~--~~-~~-~----~~~v~v~~---------------~---~ 85 (238)
T PF13360_consen 35 DGGRVYVA-SGDGNLYALDAKTGKVLWRFDLPGPIS--G--AP-VV-D----GGRVYVGT---------------S---D 85 (238)
T ss_dssp ETTEEEEE-ETTSEEEEEETTTSEEEEEEECSSCGG--S--GE-EE-E----TTEEEEEE---------------T---T
T ss_pred eCCEEEEE-cCCCEEEEEECCCCCEEEEeecccccc--c--ee-ee-c----cccccccc---------------c---e
Confidence 67777776 688899999999998654222221110 0 11 11 1 12233332 0 1
Q ss_pred ceEEEEEcCCC--ceEE-ecccCcccccc-cccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCccc
Q 037927 186 IQGIVFTAKTN--SWKK-VEHSFGSIHCC-CEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKF 255 (329)
Q Consensus 186 ~~~~vyss~t~--~W~~-~~~~~~~~p~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~ 255 (329)
..+..++..++ .|+. ... .+.. . . .... ..+.++.+|.... ...|.++|+++.+-
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~----~~~~~~---~-~~~~-~~~~~~~~~~~~~------~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTS----SPPAGV---R-SSSS-PAVDGDRLYVGTS------SGKLVALDPKTGKL 144 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-S----SCTCST---B---SE-EEEETTEEEEEET------CSEEEEEETTTTEE
T ss_pred eeeEecccCCcceeeeecccc----cccccc---c-cccC-ceEecCEEEEEec------cCcEEEEecCCCcE
Confidence 16667776666 6984 432 1111 1 1 1221 3344666776654 57999999987644
No 70
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=44.22 E-value=65 Score=24.00 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=29.0
Q ss_pred CceEEEEcCccc-ceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEE
Q 037927 117 YREIFIWNPSTG-AYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYF 165 (329)
Q Consensus 117 ~~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 165 (329)
.-.++++||.|+ .|. |..+. ....-+-+|+..+.|+||.+.
T Consensus 10 rA~V~~yd~~tKk~Wv--Ps~~~------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWI--PASKH------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeE--eCCCC------ceeEEEEecCCCcEEEEEEec
Confidence 347899999986 665 44432 124456778999999999865
No 71
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=43.27 E-value=4.5e+02 Score=28.29 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=40.2
Q ss_pred EECceeeEEeeccccCCceEEEEEECCCccccccCC-C-----CCC--CCC-cee-EEEE-ECCcEEEEEc-CCEEEEEE
Q 037927 225 LVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPK-P-----DFD--YAH-QAM-GLGV-VGGRLCLLAL-GANVELWV 292 (329)
Q Consensus 225 ~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i~l-P-----~~~--~~~-~~~-~l~~-~~g~L~~~~~-~~~l~vW~ 292 (329)
.-+|.+|.... . ...|..||+.+.....+-- . .+. ... ..+ .+++ .+|+|+++.. ...+++|.
T Consensus 812 d~dG~LYVADs-~----N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 812 AKDGQIYVADS-Y----NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eCCCcEEEEEC-C----CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 34588877554 3 5689999998876654311 0 000 000 112 3444 3789988887 88999998
Q ss_pred eee
Q 037927 293 MKE 295 (329)
Q Consensus 293 l~~ 295 (329)
++.
T Consensus 887 ~~~ 889 (1057)
T PLN02919 887 LNK 889 (1057)
T ss_pred CCC
Confidence 865
No 72
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.85 E-value=1.7e+02 Score=24.77 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=26.0
Q ss_pred CCCeEEEccccccEEEEEcCCceEEEEcCccccee
Q 037927 97 DSMVRFIGSCHGLICLALDNYREIFIWNPSTGAYT 131 (329)
Q Consensus 97 ~~~~~~~~s~~Glll~~~~~~~~~~V~NP~T~~~~ 131 (329)
+.....+.+++..|++- +..+.++|||-.+++..
T Consensus 12 gs~~~~l~~~~~~Ll~i-T~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAI-TSSGLLYVWNLKKGKAV 45 (219)
T ss_pred CCceEEEEeCCCEEEEE-eCCCeEEEEECCCCeec
Confidence 44566788888887666 68999999998887553
No 73
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=42.81 E-value=1.7e+02 Score=28.53 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=41.8
Q ss_pred cccccEEEEEcCCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcc
Q 037927 105 SCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCI 184 (329)
Q Consensus 105 s~~Glll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~ 184 (329)
..+|-+|.....+.++.||||+..+.... ..... ....+...|-|-++.-.|+... +
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgH---taNIFsvKFvP~tnnriv~sgA------------------g 115 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGH---TANIFSVKFVPYTNNRIVLSGA------------------G 115 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhcceeee--eeccc---ccceeEEeeeccCCCeEEEecc------------------C
Confidence 46787877744677999999995554332 22211 2334455667776666665544 3
Q ss_pred cceEEEEEcCC
Q 037927 185 DIQGIVFTAKT 195 (329)
Q Consensus 185 ~~~~~vyss~t 195 (329)
...+.+|+..+
T Consensus 116 Dk~i~lfdl~~ 126 (758)
T KOG1310|consen 116 DKLIKLFDLDS 126 (758)
T ss_pred cceEEEEeccc
Confidence 56778887654
No 74
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=39.85 E-value=20 Score=32.46 Aligned_cols=36 Identities=22% Similarity=0.559 Sum_probs=30.7
Q ss_pred CCCcHHHHHHHHhcCCc--------chhhhhhhchHhhHhhcCC
Q 037927 2 SNLPDDVLIEVLSRLPV--------KSLLRFKCACKQWLSLISD 37 (329)
Q Consensus 2 ~~LP~Dll~eIL~rLp~--------~~l~r~~~VcK~W~~li~~ 37 (329)
+.||.++|.+|+.|+.- ++.+.+..|||.|+.+..+
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 47999999999998863 3788999999999997764
No 75
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=39.22 E-value=1.3e+02 Score=30.91 Aligned_cols=69 Identities=19% Similarity=0.051 Sum_probs=43.0
Q ss_pred eeEECceeeEEeeccccCCceEEEEEECCC--cccccc-CCCCCCC-----------------------------CCcee
Q 037927 223 GTLVNESLHWLTNNQCEFGMFGITAFDLAT--DKFSRV-PKPDFDY-----------------------------AHQAM 270 (329)
Q Consensus 223 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~--~~~~~i-~lP~~~~-----------------------------~~~~~ 270 (329)
+++++|++|..+. ...++++|.++ +.|+.- ..+.... .....
T Consensus 190 Plvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV 263 (764)
T TIGR03074 190 PLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRI 263 (764)
T ss_pred CEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEE
Confidence 8999999999776 67999999886 455532 2322110 00123
Q ss_pred EEEEECCcEEEEEcCCEEEEEEeeeCC
Q 037927 271 GLGVVGGRLCLLALGANVELWVMKEYG 297 (329)
Q Consensus 271 ~l~~~~g~L~~~~~~~~l~vW~l~~~~ 297 (329)
.++..+|+|+.+.....-.+|.+...+
T Consensus 264 ~~~T~Dg~LiALDA~TGk~~W~fg~~G 290 (764)
T TIGR03074 264 ILPTSDARLIALDADTGKLCEDFGNNG 290 (764)
T ss_pred EEecCCCeEEEEECCCCCEEEEecCCC
Confidence 444556777776665566678776543
No 76
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=35.34 E-value=50 Score=19.00 Aligned_cols=14 Identities=29% Similarity=0.052 Sum_probs=10.4
Q ss_pred ceEEEEEECCCccc
Q 037927 242 MFGITAFDLATDKF 255 (329)
Q Consensus 242 ~~~i~~fD~~~~~~ 255 (329)
...|.++|.++.+.
T Consensus 9 ~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 9 DGYLYALDAKTGKV 22 (38)
T ss_dssp TSEEEEEETTTTSE
T ss_pred CCEEEEEECCCCCE
Confidence 67888888887643
No 77
>PF15408 PH_7: Pleckstrin homology domain
Probab=33.88 E-value=27 Score=24.68 Aligned_cols=24 Identities=21% Similarity=0.725 Sum_probs=19.9
Q ss_pred chhhhhhhchHhhHhhcCChhHHH
Q 037927 19 KSLLRFKCACKQWLSLISDPGFAL 42 (329)
Q Consensus 19 ~~l~r~~~VcK~W~~li~~~~F~~ 42 (329)
+.++..+-|||+|-....+|+|.-
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhhh
Confidence 456677889999999999999853
No 78
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.51 E-value=4.2e+02 Score=25.00 Aligned_cols=132 Identities=14% Similarity=0.204 Sum_probs=70.4
Q ss_pred CCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCC
Q 037927 116 NYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKT 195 (329)
Q Consensus 116 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t 195 (329)
....+.+||-.||+.+.+=+..... .... -+.-|. .+.+|... ....+...+...
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~~~~---S~~s--c~W~pD--g~~~V~Gs------------------~dr~i~~wdlDg 343 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSGLGF---SVSS--CAWCPD--GFRFVTGS------------------PDRTIIMWDLDG 343 (519)
T ss_pred chHheeeccCCcchhhhhcccCcCC---Ccce--eEEccC--CceeEecC------------------CCCcEEEecCCc
Confidence 4455778888888877654333111 1111 122222 34444433 123444455544
Q ss_pred ---CceEEecccCcccccccccccccCCCceeEECcee-eEEeeccccCCceEEEEEECCCcccc-ccCCCCCCCCCcee
Q 037927 196 ---NSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESL-HWLTNNQCEFGMFGITAFDLATDKFS-RVPKPDFDYAHQAM 270 (329)
Q Consensus 196 ---~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~l-ywl~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~ 270 (329)
+.|+-... |... .. ++.-+|+- +-++. +..|-.|+.++..-+ .+..-.. ..
T Consensus 344 n~~~~W~gvr~-----~~v~------dl--ait~Dgk~vl~v~~------d~~i~l~~~e~~~dr~lise~~~-----it 399 (519)
T KOG0293|consen 344 NILGNWEGVRD-----PKVH------DL--AITYDGKYVLLVTV------DKKIRLYNREARVDRGLISEEQP-----IT 399 (519)
T ss_pred chhhccccccc-----ceeE------EE--EEcCCCcEEEEEec------ccceeeechhhhhhhccccccCc-----ee
Confidence 47887764 3222 11 45556653 33333 457777777765544 2222111 12
Q ss_pred EEE-EECCcEEEEEc-CCEEEEEEeeeC
Q 037927 271 GLG-VVGGRLCLLAL-GANVELWVMKEY 296 (329)
Q Consensus 271 ~l~-~~~g~L~~~~~-~~~l~vW~l~~~ 296 (329)
.+. .-+|++.++.. ..++++|-++|.
T Consensus 400 s~~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 400 SFSISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred EEEEcCCCcEEEEEcccCeeEEeecchh
Confidence 333 34799999999 999999999863
No 79
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=32.86 E-value=96 Score=27.52 Aligned_cols=68 Identities=7% Similarity=0.094 Sum_probs=45.7
Q ss_pred ccceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCccccccCC
Q 037927 184 IDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPK 260 (329)
Q Consensus 184 ~~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i~l 260 (329)
....+.+|+..+.+|......+...-..+ . +....-+++.|.+-.-.. . ...+..||..+.+|..+.-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l---~-~~~~~~Llv~G~ft~~~~-~----~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDL---Q-WASNNQLLVGGNFTLNGT-N----SSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEE---E-EecCCEEEEEEeeEECCC-C----ceeEEEEecCCCeeeecCC
Confidence 57899999999999998876211111111 1 112236777887765442 1 6799999999999987744
No 80
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=31.05 E-value=61 Score=28.44 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=27.5
Q ss_pred CCCcHHHHHHHHhcCC-cchhhhhhhchHhhHhhcCC
Q 037927 2 SNLPDDVLIEVLSRLP-VKSLLRFKCACKQWLSLISD 37 (329)
Q Consensus 2 ~~LP~Dll~eIL~rLp-~~~l~r~~~VcK~W~~li~~ 37 (329)
.+||.+++.+||.||| -.+|..+..|-..-..++.+
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 4799999999999999 66777777765555555543
No 81
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=30.92 E-value=4.1e+02 Score=24.08 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=56.4
Q ss_pred cceEEEEEcC--CCceEEecccCcccccccccccccCCCceeEE--CceeeEEeeccccCCceEEEEEEC--CCcccccc
Q 037927 185 DIQGIVFTAK--TNSWKKVEHSFGSIHCCCEARNLQGRPMGTLV--NESLHWLTNNQCEFGMFGITAFDL--ATDKFSRV 258 (329)
Q Consensus 185 ~~~~~vyss~--t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~--~~~~~~~i 258 (329)
...+.+|+.. ++.++.+... ..+|... ........+.+ +|..-|++. .. .+.|.+|++ .+.+...+
T Consensus 213 s~~v~v~~~~~~~g~~~~~~~~-~~~~~~~---~~~~~~~~i~ispdg~~lyvsn-r~---~~sI~vf~~d~~~g~l~~~ 284 (345)
T PF10282_consen 213 SNTVSVFDYDPSDGSLTEIQTI-STLPEGF---TGENAPAEIAISPDGRFLYVSN-RG---SNSISVFDLDPATGTLTLV 284 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEE-ESCETTS---CSSSSEEEEEE-TTSSEEEEEE-CT---TTEEEEEEECTTTTTEEEE
T ss_pred CCcEEEEeecccCCceeEEEEe-eeccccc---cccCCceeEEEecCCCEEEEEe-cc---CCEEEEEEEecCCCceEEE
Confidence 3455555554 6677666540 1133222 10111223444 477555554 33 578888887 34566655
Q ss_pred -CCCCCCCCCceeEEEEE-CCc-EEEEEc-CCEEEEEEeeeCCCccceEEe
Q 037927 259 -PKPDFDYAHQAMGLGVV-GGR-LCLLAL-GANVELWVMKEYGVKCSWQKH 305 (329)
Q Consensus 259 -~lP~~~~~~~~~~l~~~-~g~-L~~~~~-~~~l~vW~l~~~~~~~~W~~~ 305 (329)
..|.... .-..+... +|+ |++... ...+.++.++.. ++.+...
T Consensus 285 ~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~--tG~l~~~ 331 (345)
T PF10282_consen 285 QTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD--TGKLTPV 331 (345)
T ss_dssp EEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEETT--TTEEEEE
T ss_pred EEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEeCC--CCcEEEe
Confidence 3443322 11233332 566 555555 889999999753 3456666
No 82
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=29.53 E-value=1.2e+02 Score=21.63 Aligned_cols=34 Identities=6% Similarity=0.104 Sum_probs=20.6
Q ss_pred eEEC-ceeeEEeeccccC-------------CceEEEEEECCCcccccc
Q 037927 224 TLVN-ESLHWLTNNQCEF-------------GMFGITAFDLATDKFSRV 258 (329)
Q Consensus 224 v~~~-G~lywl~~~~~~~-------------~~~~i~~fD~~~~~~~~i 258 (329)
|.-+ |.+|+... ...- +.+.++.||+++++...+
T Consensus 5 v~~~~g~vYfTds-S~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 5 VDQDTGTVYFTDS-SSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL 52 (89)
T ss_dssp E-TTT--EEEEES--SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE
T ss_pred EecCCCEEEEEeC-ccccCccceeeeeecCCCCcCEEEEECCCCeEEEe
Confidence 3444 88888665 3321 168999999999998765
No 83
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=28.14 E-value=4.8e+02 Score=24.04 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=20.6
Q ss_pred eeEECceeeEEeeccccCCceEEEEEECCCcc
Q 037927 223 GTLVNESLHWLTNNQCEFGMFGITAFDLATDK 254 (329)
Q Consensus 223 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~ 254 (329)
++..+|.+|.... ...+.++|+.+.+
T Consensus 252 P~v~~~~vy~~~~------~g~l~ald~~tG~ 277 (394)
T PRK11138 252 PVVVGGVVYALAY------NGNLVALDLRSGQ 277 (394)
T ss_pred cEEECCEEEEEEc------CCeEEEEECCCCC
Confidence 7788999998766 5688999988753
No 84
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=27.16 E-value=4.3e+02 Score=23.21 Aligned_cols=68 Identities=16% Similarity=-0.034 Sum_probs=44.3
Q ss_pred CCcccceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCc-cccccC
Q 037927 181 SRCIDIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATD-KFSRVP 259 (329)
Q Consensus 181 ~~~~~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~-~~~~i~ 259 (329)
+.-+...+..|+..++.=..... +|... ++.. -..+++.+|-++. . ......||..+- .-..++
T Consensus 63 G~yG~S~l~~~d~~tg~~~~~~~----l~~~~-----FgEG-it~~~d~l~qLTW-k----~~~~f~yd~~tl~~~~~~~ 127 (264)
T PF05096_consen 63 GLYGQSSLRKVDLETGKVLQSVP----LPPRY-----FGEG-ITILGDKLYQLTW-K----EGTGFVYDPNTLKKIGTFP 127 (264)
T ss_dssp CSTTEEEEEEEETTTSSEEEEEE-----TTT-------EEE-EEEETTEEEEEES-S----SSEEEEEETTTTEEEEEEE
T ss_pred CCCCcEEEEEEECCCCcEEEEEE----CCccc-----ccee-EEEECCEEEEEEe-c----CCeEEEEccccceEEEEEe
Confidence 45567888899999986444333 66655 3443 5678999999998 5 578999999863 333445
Q ss_pred CCCC
Q 037927 260 KPDF 263 (329)
Q Consensus 260 lP~~ 263 (329)
.|..
T Consensus 128 y~~E 131 (264)
T PF05096_consen 128 YPGE 131 (264)
T ss_dssp -SSS
T ss_pred cCCc
Confidence 5543
No 85
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.53 E-value=4.3e+02 Score=22.97 Aligned_cols=28 Identities=36% Similarity=0.705 Sum_probs=20.0
Q ss_pred cccccEEEEEcCCceEEEEcCcccceee
Q 037927 105 SCHGLICLALDNYREIFIWNPSTGAYTK 132 (329)
Q Consensus 105 s~~Glll~~~~~~~~~~V~NP~T~~~~~ 132 (329)
..+|=-|+...+...+-+|||..+....
T Consensus 26 N~dGnY~ltcGsdrtvrLWNp~rg~lik 53 (307)
T KOG0316|consen 26 NVDGNYCLTCGSDRTVRLWNPLRGALIK 53 (307)
T ss_pred ccCCCEEEEcCCCceEEeecccccceee
Confidence 3456666664567788899999987654
No 86
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=26.52 E-value=3.5e+02 Score=23.69 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCcEEEEEc-CCEEEEEEeeeCCCccceEE
Q 037927 276 GGRLCLLAL-GANVELWVMKEYGVKCSWQK 304 (329)
Q Consensus 276 ~g~L~~~~~-~~~l~vW~l~~~~~~~~W~~ 304 (329)
+|.+|..+. +.++++|++.-....+.|.-
T Consensus 278 dGE~yAsGSEDGTirlWQt~~~~~~~~~~~ 307 (334)
T KOG0278|consen 278 DGELYASGSEDGTIRLWQTTPGKTYGLWKC 307 (334)
T ss_pred CCceeeccCCCceEEEEEecCCCchhhccc
Confidence 899999999 99999999864332334644
No 87
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=25.98 E-value=3.2e+02 Score=21.31 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=36.2
Q ss_pred ceEEEEEECCCcccccc-CCCCCCCCCceeEEEEECC---cEEEEEcCCEEEEEEeeeCCCccceEE
Q 037927 242 MFGITAFDLATDKFSRV-PKPDFDYAHQAMGLGVVGG---RLCLLALGANVELWVMKEYGVKCSWQK 304 (329)
Q Consensus 242 ~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~g---~L~~~~~~~~l~vW~l~~~~~~~~W~~ 304 (329)
...|++||+.+++=-.. ++|.+.. ...++..++ .|.++ +.+-.|+=++..|.+.-|+-
T Consensus 72 ~t~llaYDV~~N~d~Fyke~~DGvn---~i~~g~~~~~~~~l~iv--GGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 72 QTSLLAYDVENNSDLFYKEVPDGVN---AIVIGKLGDIPSPLVIV--GGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cceEEEEEcccCchhhhhhCcccee---EEEEEecCCCCCcEEEE--CceEEEEEeCCCCcEEEEEe
Confidence 68999999998765544 7787653 344554433 33333 56667777776664445653
No 88
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=25.92 E-value=2.2e+02 Score=21.09 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=27.7
Q ss_pred ceEEEEcCcccc-eeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEE
Q 037927 118 REIFIWNPSTGA-YTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYF 165 (329)
Q Consensus 118 ~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 165 (329)
-+++..+|-++. |... . ......+..|...+.|.|+.+.
T Consensus 16 A~v~~~~p~~~~~W~~~-----~----~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV-----K----GTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES-----S----SEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC-----C----eEEEEEEEEECCCCEEEEEEEE
Confidence 367788998888 8876 1 3345556678877888887765
No 89
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=25.39 E-value=5.4e+02 Score=23.70 Aligned_cols=54 Identities=6% Similarity=-0.039 Sum_probs=34.2
Q ss_pred eEEEEEcCCC--ceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCcc
Q 037927 187 QGIVFTAKTN--SWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDK 254 (329)
Q Consensus 187 ~~~vyss~t~--~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~ 254 (329)
.+.-++..++ .|+.-.. .|... . .....++..+|.+|+... ...+.++|..+.+
T Consensus 171 ~l~ald~~tG~~~W~~~~~----~~~~~---~-~~~~sP~v~~~~v~~~~~------~g~v~a~d~~~G~ 226 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLD----VPSLT---L-RGESAPATAFGGAIVGGD------NGRVSAVLMEQGQ 226 (394)
T ss_pred EEEEEEccCCCEeeeecCC----CCccc---c-cCCCCCEEECCEEEEEcC------CCEEEEEEccCCh
Confidence 5677777776 5877543 22211 0 111227778898888666 5789999988754
No 90
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=25.02 E-value=3.3e+02 Score=26.60 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=22.6
Q ss_pred eeEECceeeEEeeccccCCceEEEEEECCCc--ccc
Q 037927 223 GTLVNESLHWLTNNQCEFGMFGITAFDLATD--KFS 256 (329)
Q Consensus 223 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~--~~~ 256 (329)
+++.+|.+|.... ...|.++|..+. .|+
T Consensus 65 Pvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~ 94 (527)
T TIGR03075 65 PLVVDGVMYVTTS------YSRVYALDAKTGKELWK 94 (527)
T ss_pred CEEECCEEEEECC------CCcEEEEECCCCceeeE
Confidence 7889999998766 568999998874 454
No 91
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=24.34 E-value=2.7e+02 Score=23.98 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=37.7
Q ss_pred ccccEEEEEcCCceEEEEcCcccceeeC--CCCCCCCCCCCceeEEEEEeCCCCCEEEEEE
Q 037927 106 CHGLICLALDNYREIFIWNPSTGAYTKL--PADPDATYDYDIVKYGFGYDSSTNGYKVMFY 164 (329)
Q Consensus 106 ~~Glll~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~ 164 (329)
.+|.|--. ....+++..||.|+.-..+ .+...... -..+++-|+|..++-+||.-
T Consensus 37 a~G~LYgl-~~~g~lYtIn~~tG~aT~vg~s~~~~al~---g~~~gvDFNP~aDRlRvvs~ 93 (236)
T PF14339_consen 37 ANGQLYGL-GSTGRLYTINPATGAATPVGASPLTVALS---GTAFGVDFNPAADRLRVVSN 93 (236)
T ss_pred CCCCEEEE-eCCCcEEEEECCCCeEEEeeccccccccc---CceEEEecCcccCcEEEEcc
Confidence 45655444 4778999999999998777 33333321 12667778888888888754
No 92
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.86 E-value=5.1e+02 Score=22.92 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=51.6
Q ss_pred ccEEEEEcCCceEEEEcCcccceee--CCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCccc
Q 037927 108 GLICLALDNYREIFIWNPSTGAYTK--LPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCID 185 (329)
Q Consensus 108 Glll~~~~~~~~~~V~NP~T~~~~~--LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~ 185 (329)
-+|.+. .++..+...||.+|.... +-..... -..+. -++|.|+.-. .
T Consensus 24 T~v~ig-SHs~~~~avd~~sG~~~We~ilg~RiE-----~sa~v------vgdfVV~GCy-------------------~ 72 (354)
T KOG4649|consen 24 TLVVIG-SHSGIVIAVDPQSGNLIWEAILGVRIE-----CSAIV------VGDFVVLGCY-------------------S 72 (354)
T ss_pred eEEEEe-cCCceEEEecCCCCcEEeehhhCceee-----eeeEE------ECCEEEEEEc-------------------c
Confidence 444444 466677777998887543 3322221 11222 2467443332 2
Q ss_pred ceEEEEEcCCC--ceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCccc
Q 037927 186 IQGIVFTAKTN--SWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKF 255 (329)
Q Consensus 186 ~~~~vyss~t~--~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~ 255 (329)
....+..+.|+ .|...... . .+.+..+-.+|-+-|.+. . +..+.++|+.+...
T Consensus 73 g~lYfl~~~tGs~~w~f~~~~--~----------vk~~a~~d~~~glIycgs-h----d~~~yalD~~~~~c 127 (354)
T KOG4649|consen 73 GGLYFLCVKTGSQIWNFVILE--T----------VKVRAQCDFDGGLIYCGS-H----DGNFYALDPKTYGC 127 (354)
T ss_pred CcEEEEEecchhheeeeeehh--h----------hccceEEcCCCceEEEec-C----CCcEEEecccccce
Confidence 33445555554 78776541 0 122213445555555555 3 56788888887644
No 93
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=23.64 E-value=5.2e+02 Score=22.91 Aligned_cols=76 Identities=9% Similarity=-0.003 Sum_probs=43.5
Q ss_pred CCCCCCCCCeEEEccccccEEEEEcCCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCC---C-CCEEEEEEEE
Q 037927 91 FPFIRPDSMVRFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSS---T-NGYKVMFYFQ 166 (329)
Q Consensus 91 ~~~~~~~~~~~~~~s~~Glll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~---~-~~ykvv~~~~ 166 (329)
.|-.+.++.-.+.=|-+|-+|....+.+.+.|+|-...+...||+.............++.+=+. . =.|+++++..
T Consensus 38 VpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y 117 (282)
T PF15492_consen 38 VPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY 117 (282)
T ss_pred cCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEec
Confidence 33333333334444666666554367888999999988888998866433221222333333221 1 2678888863
No 94
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=23.53 E-value=5.6e+02 Score=23.26 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=13.7
Q ss_pred cccEEEEEcCCceEEEEcCccccee
Q 037927 107 HGLICLALDNYREIFIWNPSTGAYT 131 (329)
Q Consensus 107 ~Glll~~~~~~~~~~V~NP~T~~~~ 131 (329)
+|.+.+. .....++.+|+.||+..
T Consensus 105 ~~~v~v~-~~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 105 GGLVFVG-TEKGEVIALDAEDGKEL 128 (377)
T ss_pred CCEEEEE-cCCCEEEEEECCCCcEe
Confidence 4555444 34556666777776643
No 95
>KOG1852 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.39 E-value=55 Score=25.95 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=25.2
Q ss_pred hcCCcc--hhhhhhhchHhhHhhcCChhHHHHH
Q 037927 14 SRLPVK--SLLRFKCACKQWLSLISDPGFALLQ 44 (329)
Q Consensus 14 ~rLp~~--~l~r~~~VcK~W~~li~~~~F~~~~ 44 (329)
+|+..| ++..+-+||++-+++++...|..+.
T Consensus 144 srvsikessv~klgsvcrrvyrifsha~fhhr~ 176 (223)
T KOG1852|consen 144 SRVSIKESSVAKLGSVCRRVYRIFSHAYFHHRK 176 (223)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665 7889999999999999988886553
No 96
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.87 E-value=5.4e+02 Score=22.82 Aligned_cols=113 Identities=8% Similarity=0.101 Sum_probs=61.4
Q ss_pred CceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCC
Q 037927 117 YREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTN 196 (329)
Q Consensus 117 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~ 196 (329)
...+++||+.+.+|..+-..-. . ....+.+. +.=+|++.+... . .......+..|+..+.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~-----G-~V~~l~~~---~~~~Llv~G~ft---------~--~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGIS-----G-TVTDLQWA---SNNQLLVGGNFT---------L--NGTNSSNLATYDFKNQ 74 (281)
T ss_pred CCEEEEEECCCCEeecCCCCce-----E-EEEEEEEe---cCCEEEEEEeeE---------E--CCCCceeEEEEecCCC
Confidence 5678999999999998765521 1 12234433 234455555431 0 1225788999999999
Q ss_pred ceEEecccC-cccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCcccccc
Q 037927 197 SWKKVEHSF-GSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRV 258 (329)
Q Consensus 197 ~W~~~~~~~-~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i 258 (329)
+|....... ..+|-.. .... ...-++.-.|+++ ....+...|+.|| ..+|+.+
T Consensus 75 ~w~~~~~~~s~~ipgpv-----~a~~-~~~~d~~~~~~aG-~~~~g~~~l~~~d--Gs~W~~i 128 (281)
T PF12768_consen 75 TWSSLGGGSSNSIPGPV-----TALT-FISNDGSNFWVAG-RSANGSTFLMKYD--GSSWSSI 128 (281)
T ss_pred eeeecCCcccccCCCcE-----EEEE-eeccCCceEEEec-eecCCCceEEEEc--CCceEec
Confidence 998887621 1233322 0000 1222444455554 3222356777774 3355555
No 97
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=21.54 E-value=5.9e+02 Score=22.78 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=79.5
Q ss_pred EEEccccccEEEEEcCCceEEEEcCcccceeeCCCCCCCCCCC------------CceeEEEEEeCCCCCEEEEEEEEee
Q 037927 101 RFIGSCHGLICLALDNYREIFIWNPSTGAYTKLPADPDATYDY------------DIVKYGFGYDSSTNGYKVMFYFQEI 168 (329)
Q Consensus 101 ~~~~s~~Glll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~------------~~~~~~~~~d~~~~~ykvv~~~~~~ 168 (329)
.+--+-+|-|=+.......+--.||.||+....|-..-..... +......-+|+.+..++=.-+-..
T Consensus 66 dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~- 144 (353)
T COG4257 66 DVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLE- 144 (353)
T ss_pred ccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccc-
Confidence 3444567777776334556667899999999888766554320 000011112332222222222110
Q ss_pred cccccccccCCCCCcccceEEEEEcCCCceEEecccCc-cc-c--cccc---cccccCCCcee--EECceeeEEeecccc
Q 037927 169 DHKREDNLQDDNSRCIDIQGIVFTAKTNSWKKVEHSFG-SI-H--CCCE---ARNLQGRPMGT--LVNESLHWLTNNQCE 239 (329)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~-~~-p--~~~~---~~~~~~~~~~v--~~~G~lywl~~~~~~ 239 (329)
........-||+...+-|-+-..-+. .+ | ..++ .+. .....++ --||.+|+... .
T Consensus 145 ------------~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-G~gpyGi~atpdGsvwyasl-a-- 208 (353)
T COG4257 145 ------------HADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-GGGPYGICATPDGSVWYASL-A-- 208 (353)
T ss_pred ------------cCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-CCCCcceEECCCCcEEEEec-c--
Confidence 23456777889998888854432000 01 0 0000 000 1122244 45799998755 3
Q ss_pred CCceEEEEEECCCccccccCCCCCC
Q 037927 240 FGMFGITAFDLATDKFSRVPKPDFD 264 (329)
Q Consensus 240 ~~~~~i~~fD~~~~~~~~i~lP~~~ 264 (329)
.+.|.-.|+.+..-..++.|...
T Consensus 209 --gnaiaridp~~~~aev~p~P~~~ 231 (353)
T COG4257 209 --GNAIARIDPFAGHAEVVPQPNAL 231 (353)
T ss_pred --ccceEEcccccCCcceecCCCcc
Confidence 57999999999988888999874
No 98
>PRK04792 tolB translocation protein TolB; Provisional
Probab=21.54 E-value=7e+02 Score=23.62 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=68.1
Q ss_pred CceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCcccceEEEEEcCCC
Q 037927 117 YREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCIDIQGIVFTAKTN 196 (329)
Q Consensus 117 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~vyss~t~ 196 (329)
..+++++|..|++...+...+... ....+.|.++ + ++... ...+...+.+++..++
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~-------~~~~wSPDG~-~-La~~~---------------~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGIN-------GAPRFSPDGK-K-LALVL---------------SKDGQPEIYVVDIATK 296 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCc-------CCeeECCCCC-E-EEEEE---------------eCCCCeEEEEEECCCC
Confidence 457999999999877665432211 1234455433 2 32222 1223456777788888
Q ss_pred ceEEecccCcccccccccccccCCCceeEECce-eeEEeeccccCCceEEEEEECCCccccccCCCCCCCCCceeEEEEE
Q 037927 197 SWKKVEHSFGSIHCCCEARNLQGRPMGTLVNES-LHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDYAHQAMGLGVV 275 (329)
Q Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~l~~~ 275 (329)
..+.+.. -.... ......-+|. +++... ... ...|..+|+.+.+...+....... ....+ .-
T Consensus 297 ~~~~lt~----~~~~~-------~~p~wSpDG~~I~f~s~-~~g--~~~Iy~~dl~~g~~~~Lt~~g~~~--~~~~~-Sp 359 (448)
T PRK04792 297 ALTRITR----HRAID-------TEPSWHPDGKSLIFTSE-RGG--KPQIYRVNLASGKVSRLTFEGEQN--LGGSI-TP 359 (448)
T ss_pred CeEECcc----CCCCc-------cceEECCCCCEEEEEEC-CCC--CceEEEEECCCCCEEEEecCCCCC--cCeeE-CC
Confidence 8777654 11111 1112223554 444433 221 457888998877765553211110 11111 11
Q ss_pred CCc-EEEEEc-CCEEEEEEee
Q 037927 276 GGR-LCLLAL-GANVELWVMK 294 (329)
Q Consensus 276 ~g~-L~~~~~-~~~l~vW~l~ 294 (329)
+|+ |++... .....||.++
T Consensus 360 DG~~l~~~~~~~g~~~I~~~d 380 (448)
T PRK04792 360 DGRSMIMVNRTNGKFNIARQD 380 (448)
T ss_pred CCCEEEEEEecCCceEEEEEE
Confidence 343 444444 4456677765
No 99
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=21.32 E-value=8.4e+02 Score=24.49 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=23.3
Q ss_pred EEEccccccEEEEEcCCceEEEEcCcccceee
Q 037927 101 RFIGSCHGLICLALDNYREIFIWNPSTGAYTK 132 (329)
Q Consensus 101 ~~~~s~~Glll~~~~~~~~~~V~NP~T~~~~~ 132 (329)
.++.-++|.+... ++.+.+-+||+.++...+
T Consensus 209 Sv~~Lrd~tI~sg-DS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 209 SVLFLRDSTIASG-DSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred EEEEeecCcEEEe-cCCceEEEEcccCcchhh
Confidence 3444478888777 788899999999886543
No 100
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=21.26 E-value=7.3e+02 Score=23.75 Aligned_cols=148 Identities=11% Similarity=0.029 Sum_probs=81.4
Q ss_pred ccc-EEEEEcCCceEEEEcCcccceeeCCCCCCCCCCCCceeEEEEEeCCCCCEEEEEEEEeecccccccccCCCCCccc
Q 037927 107 HGL-ICLALDNYREIFIWNPSTGAYTKLPADPDATYDYDIVKYGFGYDSSTNGYKVMFYFQEIDHKREDNLQDDNSRCID 185 (329)
Q Consensus 107 ~Gl-ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~ 185 (329)
+|- +++...+...+++||-.|++...+-++-..... ..-.|...+.++ .+++. +..
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~---~~e~FeVShd~~---fia~~-----------------G~~ 324 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK---SMERFEVSHDSN---FIAIA-----------------GNN 324 (514)
T ss_pred CCceEEEecccceEEEEeeccccccccccCCCCcccc---hhheeEecCCCC---eEEEc-----------------ccC
Confidence 444 444436778899999999999888766654421 122344444433 33333 123
Q ss_pred ceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCCccccccCCCCCCC
Q 037927 186 IQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLATDKFSRVPKPDFDY 265 (329)
Q Consensus 186 ~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~ 265 (329)
-.+.+....|+.|-.-=. ++-.. ... ...-+|..-|+.. . .+.|..+|+...+....-.-.+..
T Consensus 325 G~I~lLhakT~eli~s~K----ieG~v-----~~~--~fsSdsk~l~~~~-~----~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFK----IEGVV-----SDF--TFSSDSKELLASG-G----TGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred ceEEeehhhhhhhhheee----eccEE-----eeE--EEecCCcEEEEEc-C----CceEEEEecCCcceEEEEeecCcc
Confidence 456777778887743322 33333 111 2335677666655 3 568999999987443322222222
Q ss_pred CCceeEEE-EECCcEEEEEc-CCEEEEEEeee
Q 037927 266 AHQAMGLG-VVGGRLCLLAL-GANVELWVMKE 295 (329)
Q Consensus 266 ~~~~~~l~-~~~g~L~~~~~-~~~l~vW~l~~ 295 (329)
....++ ..+|.++.++. ..-+.|+..+.
T Consensus 389 --~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 389 --HGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred --ceeeeeecCCCceEEeccCcceEEEeccch
Confidence 122334 34677655555 55666766554
No 101
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.11 E-value=2.5e+02 Score=27.00 Aligned_cols=54 Identities=15% Similarity=-0.071 Sum_probs=37.3
Q ss_pred eeEECceeeEEeeccccCCceEEEEEECCCcccc-ccCCCCCCCCCceeEEEEECCcEEEEEc
Q 037927 223 GTLVNESLHWLTNNQCEFGMFGITAFDLATDKFS-RVPKPDFDYAHQAMGLGVVGGRLCLLAL 284 (329)
Q Consensus 223 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~l~~~~g~L~~~~~ 284 (329)
.+..+|.+|.-.. ...|.+||..+.+-. ..++|.... ..+.+.+.+|++|+...
T Consensus 402 ~~~~g~~v~~g~~------dG~l~ald~~tG~~lW~~~~~~~~~--a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 402 LATAGNLVFAGAA------DGYFRAFDATTGKELWKFRTPSGIQ--ATPMTYEVNGKQYVGVM 456 (488)
T ss_pred eEecCCeEEEECC------CCeEEEEECCCCceeeEEECCCCce--EcCEEEEeCCEEEEEEE
Confidence 4566777777555 679999999875432 357766553 23555577999999887
No 102
>PF13854 Kelch_5: Kelch motif
Probab=20.32 E-value=2e+02 Score=16.82 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=20.1
Q ss_pred eeEECceeeEEeecccc-C--CceEEEEEECCC
Q 037927 223 GTLVNESLHWLTNNQCE-F--GMFGITAFDLAT 252 (329)
Q Consensus 223 ~v~~~G~lywl~~~~~~-~--~~~~i~~fD~~~ 252 (329)
.+.+++.+|..++ ... . ..+.+..||+.+
T Consensus 10 ~~~~~~~iyi~GG-~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 10 AVVVGNNIYIFGG-YSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred EEEECCEEEEEcC-ccCCCCCEECcEEEEECCC
Confidence 7888999999988 541 1 145677777654
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=20.26 E-value=7.5e+02 Score=23.51 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=61.7
Q ss_pred cceEEEEEcCCCceEEecccCcccccccccccccCCCceeEECceeeEEeeccccCCceEEEEEECCC-ccccccCCCCC
Q 037927 185 DIQGIVFTAKTNSWKKVEHSFGSIHCCCEARNLQGRPMGTLVNESLHWLTNNQCEFGMFGITAFDLAT-DKFSRVPKPDF 263 (329)
Q Consensus 185 ~~~~~vyss~t~~W~~~~~~~~~~p~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~-~~~~~i~lP~~ 263 (329)
...+.||+..+.. ..+. +|... ..-. .+.+..+=||++. ... +..+..+|+.. +.+..+.++..
T Consensus 368 d~~vkiwdlks~~--~~a~----Fpght-----~~vk-~i~FsENGY~Lat-~ad--d~~V~lwDLRKl~n~kt~~l~~~ 432 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVAK----FPGHT-----GPVK-AISFSENGYWLAT-AAD--DGSVKLWDLRKLKNFKTIQLDEK 432 (506)
T ss_pred CceEEEEEcCCcc--cccc----CCCCC-----Ccee-EEEeccCceEEEE-Eec--CCeEEEEEehhhcccceeecccc
Confidence 4566777766655 3443 55543 2222 6778778899988 443 45699999985 45666777765
Q ss_pred CCCCceeEEEE-ECCcEEEEEcCCEEEEEEeeeCCCccceEEe
Q 037927 264 DYAHQAMGLGV-VGGRLCLLALGANVELWVMKEYGVKCSWQKH 305 (329)
Q Consensus 264 ~~~~~~~~l~~-~~g~L~~~~~~~~l~vW~l~~~~~~~~W~~~ 305 (329)
... -.+.. .-|....+. +..+.|...+. ...+|++.
T Consensus 433 ~~v---~s~~fD~SGt~L~~~-g~~l~Vy~~~k--~~k~W~~~ 469 (506)
T KOG0289|consen 433 KEV---NSLSFDQSGTYLGIA-GSDLQVYICKK--KTKSWTEI 469 (506)
T ss_pred ccc---eeEEEcCCCCeEEee-cceeEEEEEec--ccccceee
Confidence 321 11111 124444444 88888988876 34579998
Done!