Query 037930
Match_columns 361
No_of_seqs 127 out of 232
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:27:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jz0_A Lincosamide nucleotidyl 89.5 0.5 1.7E-05 45.2 6.1 96 35-148 25-125 (287)
2 1no5_A Hypothetical protein HI 76.4 3.9 0.00013 32.9 5.3 52 29-81 8-59 (114)
3 2pbe_A AAD6, aminoglycoside 6- 70.5 11 0.00037 35.7 7.6 98 37-145 9-117 (294)
4 2rff_A Putative nucleotidyltra 66.9 6.6 0.00023 31.8 4.6 44 35-79 20-63 (111)
5 3fhm_A Uncharacterized protein 47.1 31 0.0011 28.2 5.5 57 116-174 57-117 (165)
6 2rc3_A CBS domain; in SITU pro 43.7 46 0.0016 25.8 5.8 57 116-175 39-99 (135)
7 3lqn_A CBS domain protein; csg 43.1 33 0.0011 27.2 5.0 56 117-174 48-111 (150)
8 4ebj_A Aminoglycoside nucleoti 39.8 23 0.00079 33.7 3.9 94 35-164 27-122 (272)
9 1jql_B DNA polymerase III, del 39.5 53 0.0018 26.9 5.8 76 135-219 4-86 (140)
10 1yav_A Hypothetical protein BS 38.6 37 0.0013 27.4 4.6 54 117-172 47-108 (159)
11 1ylq_A Putative nucleotidyltra 34.3 57 0.002 25.1 4.9 42 38-81 7-50 (96)
12 3ctu_A CBS domain protein; str 34.2 52 0.0018 26.2 4.9 55 115-171 46-107 (156)
13 3fv6_A YQZB protein; CBS domai 33.8 59 0.002 26.2 5.2 56 117-174 47-107 (159)
14 3kpb_A Uncharacterized protein 33.5 63 0.0021 24.4 5.0 56 116-174 31-86 (122)
15 3k2v_A Putative D-arabinose 5- 33.2 45 0.0016 26.6 4.3 56 117-174 61-119 (149)
16 3ju4_A Endo-N-acetylneuraminid 32.4 11 0.00038 38.6 0.5 18 10-27 339-356 (670)
17 1wot_A Putative minimal nucleo 31.2 19 0.00067 28.0 1.7 43 35-79 13-55 (98)
18 3lv9_A Putative transporter; C 31.0 50 0.0017 26.2 4.2 52 120-174 59-111 (148)
19 2emq_A Hypothetical conserved 28.4 71 0.0024 25.3 4.7 57 116-174 43-107 (157)
20 2ef7_A Hypothetical protein ST 27.1 93 0.0032 23.8 5.1 55 117-174 35-91 (133)
21 2yzi_A Hypothetical protein PH 26.4 96 0.0033 23.9 5.1 55 119-175 40-97 (138)
22 3lhh_A CBS domain protein; str 25.0 89 0.003 25.7 4.8 56 116-174 74-130 (172)
23 2rih_A Conserved protein with 24.9 1.1E+02 0.0038 23.8 5.2 58 117-175 36-95 (141)
24 2o16_A Acetoin utilization pro 23.8 95 0.0033 25.0 4.7 25 119-145 38-62 (160)
25 1pbj_A Hypothetical protein; s 22.6 1.3E+02 0.0046 22.5 5.1 55 116-173 31-88 (125)
26 3oco_A Hemolysin-like protein 22.4 73 0.0025 25.5 3.7 42 132-174 68-109 (153)
27 3ocm_A Putative membrane prote 21.3 71 0.0024 26.7 3.5 78 121-203 73-157 (173)
No 1
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=89.49 E-value=0.5 Score=45.19 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=64.7
Q ss_pred HHHHHHHHh---cCCCceEEEEecceeccCCCCCCCceEEEEecCC--cchHHHHHhhcCccchHHHHHhcccchhhHHH
Q 037930 35 KAELASFLK---VIPPVEFCCVYGSSLHPNNKDKSAMVDYVLGVSD--PQQWHSENLKMNADHYALWLRLLGGAKLITQV 109 (361)
Q Consensus 35 ~~~l~~il~---~~~pi~~afaYGSgVf~q~~~~~~miDfI~~V~d--~~~wH~~NL~~Np~HYs~~l~~lG~~~~I~~v 109 (361)
++.+..|++ ..+.|++++.|||=+... .+.-.-+||+++|+| ...|- + + .|+..+| +..+. +
T Consensus 25 ~e~l~~I~~~~~~d~~i~av~l~GS~~~~~-~D~~SD~Di~~vV~~~~~~~f~--~------~--~Wl~~fG-~~~~~-f 91 (287)
T 3jz0_A 25 KELIANVKNLTESDERITACMMYGSFTKGE-GDQYSDIEFYIFLKHSITSNFD--S------S--NWLFDVA-PYLML-Y 91 (287)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEECSGGGTTC-CCTTCCEEEEEEECGGGTTTCC--H------H--HHHHHHC-CEEEE-E
T ss_pred HHHHHHHHHHHhcCCCEEEEEEECCccCCC-CCCccceeEEEEEcCcchhhhh--h------H--HHHHHhh-hhheE-e
Confidence 445666665 457899999999999865 566678999999998 55552 1 2 4899999 66553 2
Q ss_pred hhhcCCceeecceeecCCeeeEEeeeeHHHHHHHHhccc
Q 037930 110 ADEIGVGVHFNPFVTWNDRLLKYGVVRMDDLISDILNWK 148 (361)
Q Consensus 110 Q~~~gagVyfN~~v~~~g~~iKYGVis~~~l~~DL~~W~ 148 (361)
...+| |+ -..-.||.+|-.-+++.+++ ..+..|.
T Consensus 92 ~~~~~---~~-l~lF~Dg~riDl~l~~~~~l-~~~~~~~ 125 (287)
T 3jz0_A 92 KNEYG---TE-VVIFDNLIRGEFHFLSEKDM-NIIPSFK 125 (287)
T ss_dssp ECTTS---CE-EEEETTSCEEEEEEEEGGGG-GGGGGGG
T ss_pred ecccc---eE-EEEecCCcEEEEEEeeHHHH-HHHhccc
Confidence 21121 22 11123789999999999986 4445554
No 2
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=76.36 E-value=3.9 Score=32.91 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHhcCCCceEEEEecceeccCCCCCCCceEEEEecCCcchH
Q 037930 29 RMENDKKAELASFLKVIPPVEFCCVYGSSLHPNNKDKSAMVDYVLGVSDPQQW 81 (361)
Q Consensus 29 ~~~~~~~~~l~~il~~~~pi~~afaYGSgVf~q~~~~~~miDfI~~V~d~~~w 81 (361)
.+.++..+.+..++..++++..++-|||-+... ...+.=||+.+.++++..+
T Consensus 8 ~l~~~~~~~i~~~l~~~~~v~~v~LFGS~ArG~-~~~~SDIDl~V~~~~~~~~ 59 (114)
T 1no5_A 8 DIKSEELAIVKTILQQLVPDYTVWAFGSRVKGK-AKKYSDLDLAIISEEPLDF 59 (114)
T ss_dssp CSCHHHHHHHHHHHHHHCTTSEEEEEGGGTTTC-CCTTCCEEEEEECSSCCCH
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEeccCCCC-CCCCCCeEEEEEeCCCCCH
Confidence 344444456667777677789999999998865 3445689999998876444
No 3
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=70.46 E-value=11 Score=35.67 Aligned_cols=98 Identities=17% Similarity=0.271 Sum_probs=52.5
Q ss_pred HHHHHHh---cCCCceEEEEecceeccCC-CCCCCceEEEEecCCcchHHHHHhhcCccchHHHHHhcccchhhHHHhhh
Q 037930 37 ELASFLK---VIPPVEFCCVYGSSLHPNN-KDKSAMVDYVLGVSDPQQWHSENLKMNADHYALWLRLLGGAKLITQVADE 112 (361)
Q Consensus 37 ~l~~il~---~~~pi~~afaYGSgVf~q~-~~~~~miDfI~~V~d~~~wH~~NL~~Np~HYs~~l~~lG~~~~I~~vQ~~ 112 (361)
.+..|++ ..+.|++++..||-+-+.. .|.-.=+|++++|+|+..+ ..+. .|+..+| +..+..--+.
T Consensus 9 m~~~i~~~a~~d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~~~~-----~~~~----~wl~~fg-~~l~~~~~e~ 78 (294)
T 2pbe_A 9 MMDIFLDFALNDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTDVESF-----KEND----QWLEIFG-KRIMMQKPED 78 (294)
T ss_dssp HHHHHHHHHHHCTTEEEEEEC------------CCCEEEEEEESCHHHH-----HTCS----GGGGGGC-CEEEEECTTS
T ss_pred HHHHHHHHHcCCcCEEEEEEecCCCCCCCCCCCcccceEEEEEcCchHh-----hhhH----HHHHHHh-hHHhhccccc
Confidence 4555555 4456999999999777552 2333469999999999444 3332 2467778 4533221111
Q ss_pred -------cCCceeecceeecCCeeeEEeeeeHHHHHHHHh
Q 037930 113 -------IGVGVHFNPFVTWNDRLLKYGVVRMDDLISDIL 145 (361)
Q Consensus 113 -------~gagVyfN~~v~~~g~~iKYGVis~~~l~~DL~ 145 (361)
.|-.--|. .+-.||.+|---.++.+++..-+.
T Consensus 79 ~~~~~~~~~~~~~~l-~lf~dg~rIDl~~~~~~~l~~~~~ 117 (294)
T 2pbe_A 79 MELFPPELGNWFSYI-ILFEDGNKLDLTLIPIREAEDYFA 117 (294)
T ss_dssp CSSSCCCSTTCEEEE-EEETTSCEEEEEEEEGGGHHHHHH
T ss_pred cccCcccCCCceeEE-EEecCCcEEEEEEecHHHHHHHHh
Confidence 11111111 111478899999999998888554
No 4
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=66.85 E-value=6.6 Score=31.83 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCceEEEEecceeccCCCCCCCceEEEEecCCcc
Q 037930 35 KAELASFLKVIPPVEFCCVYGSSLHPNNKDKSAMVDYVLGVSDPQ 79 (361)
Q Consensus 35 ~~~l~~il~~~~pi~~afaYGSgVf~q~~~~~~miDfI~~V~d~~ 79 (361)
++.+..+.+.+|++..++-|||-+.... ..+.-||+.+..+++.
T Consensus 20 ~~~~~~l~~~~~~v~~v~LFGS~ArG~~-~~~SDIDl~V~~~~~~ 63 (111)
T 2rff_A 20 KEIVEEVASSFPNLEEVYIFGSRARGDY-LDTSDIDILFVFKGIK 63 (111)
T ss_dssp HHHHHHHHHHCTTEEEEEEESHHHHSCC-CTTCCEEEEEEESSCT
T ss_pred HHHHHHHHHHcCCccEEEEEeeeecCCC-CCCCCEEEEEEecCCC
Confidence 3345566667888999999999998763 4456899999887653
No 5
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=47.05 E-value=31 Score=28.18 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=37.5
Q ss_pred ceeecceeecCCeeeEEeeeeHHHHHHHHh----ccccchhhcccccccccccCChhHHHHHH
Q 037930 116 GVHFNPFVTWNDRLLKYGVVRMDDLISDIL----NWKRFYLSGRLQKPVQILADNLDIGNANS 174 (361)
Q Consensus 116 gVyfN~~v~~~g~~iKYGVis~~~l~~DL~----~W~~lYlaGRlqKPV~il~~~~~i~~a~~ 174 (361)
++..-|.+..+|+. .|+|+..|+.+-+. .|...-+.--|.+|+..+..+..+.+|.+
T Consensus 57 ~~~~~~Vvd~~~~~--~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~ 117 (165)
T 3fhm_A 57 KIGAVVVTDADGVV--LGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLME 117 (165)
T ss_dssp TCSEEEEECTTSCE--EEEEEHHHHHHHHHHHGGGGGTSBGGGTSBSSCCCBCTTCBHHHHHH
T ss_pred CCCEEEEEcCCCeE--EEEEEHHHHHHHHHhcCCccccCCHHHHhcCCCeEECCCCcHHHHHH
Confidence 34445566555665 49999999988654 35556677777777766666666665544
No 6
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=43.65 E-value=46 Score=25.84 Aligned_cols=57 Identities=11% Similarity=0.115 Sum_probs=36.5
Q ss_pred ceeecceeecCCeeeEEeeeeHHHHHHHHh----ccccchhhcccccccccccCChhHHHHHHH
Q 037930 116 GVHFNPFVTWNDRLLKYGVVRMDDLISDIL----NWKRFYLSGRLQKPVQILADNLDIGNANSV 175 (361)
Q Consensus 116 gVyfN~~v~~~g~~iKYGVis~~~l~~DL~----~W~~lYlaGRlqKPV~il~~~~~i~~a~~~ 175 (361)
++..-|.+. +|+. .|+|+..|+.+-+. .|...-+.--|.+|+..+..+..+.+|...
T Consensus 39 ~~~~~~Vvd-~~~~--~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~ 99 (135)
T 2rc3_A 39 NIGALLVMK-DEKL--VGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMAL 99 (135)
T ss_dssp TCSEEEEEE-TTEE--EEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCCBCTTCBHHHHHHH
T ss_pred CCCEEEEEE-CCEE--EEEEehHHHHHHHHHcCCCcccCCHHHhccCCCeEECCCCcHHHHHHH
Confidence 344446666 6655 49999999987543 355555666676776666666666665543
No 7
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=43.09 E-value=33 Score=27.19 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=36.2
Q ss_pred eeecceeecCCeeeEEeeeeHHHHHHHHhc--------cccchhhcccccccccccCChhHHHHHH
Q 037930 117 VHFNPFVTWNDRLLKYGVVRMDDLISDILN--------WKRFYLSGRLQKPVQILADNLDIGNANS 174 (361)
Q Consensus 117 VyfN~~v~~~g~~iKYGVis~~~l~~DL~~--------W~~lYlaGRlqKPV~il~~~~~i~~a~~ 174 (361)
+..-|.+..+|+. .|+|+..|+.+-+.. |...-+.--|.+|+..+..+..+..|..
T Consensus 48 ~~~~pVvd~~~~~--~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~ 111 (150)
T 3lqn_A 48 YSAIPVLDPMYKL--HGLISTAMILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALE 111 (150)
T ss_dssp CSEEEEECTTCBE--EEEEEHHHHHHHTBCSSSBCGGGGGGCBGGGTCBSSCCEEETTCBHHHHHH
T ss_pred CcEEEEECCCCCE--EEEEEHHHHHHHHHhhcccchhHHhcCCHHHHhcCCCceeCCCCCHHHHHH
Confidence 3444556555655 599999999987753 4455566666666666665555665544
No 8
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=39.82 E-value=23 Score=33.69 Aligned_cols=94 Identities=11% Similarity=0.029 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCCceEEEEecceeccCCCCCCCceEEEEecCCcchHHHHHhhcCccchHHHHHhcccchhhHHHhhhcC
Q 037930 35 KAELASFLKVIPPVEFCCVYGSSLHPNNKDKSAMVDYVLGVSDPQQWHSENLKMNADHYALWLRLLGGAKLITQVADEIG 114 (361)
Q Consensus 35 ~~~l~~il~~~~pi~~afaYGSgVf~q~~~~~~miDfI~~V~d~~~wH~~NL~~Np~HYs~~l~~lG~~~~I~~vQ~~~g 114 (361)
.+.++.|.+.++++..++-|||-++... ..++-||+.+.+++...- -|.. ++.
T Consensus 27 ~~ive~L~~~~~~i~~I~LFGS~ARG~~-~~~SDIDilVv~~~~~~~----------~~~~---l~~------------- 79 (272)
T 4ebj_A 27 ARWVDRLREEYADAVAILLKGSYARGDA-ATWSDIDFDVLVSTQDVE----------DYRT---WIE------------- 79 (272)
T ss_dssp HHHHHHHHHHCTTEEEEEEEHHHHHTCC-CTTCCEEEEEEESSTTCE----------EEEE---EEE-------------
T ss_pred HHHHHHHHHhcCCceEEEEEeceeCCCC-CCCCceEEEEEecCCCHH----------HHHH---HHH-------------
Confidence 3344555556788999999999999763 456689999998764211 1110 000
Q ss_pred CceeecceeecCC--eeeEEeeeeHHHHHHHHhccccchhhccccccccccc
Q 037930 115 VGVHFNPFVTWND--RLLKYGVVRMDDLISDILNWKRFYLSGRLQKPVQILA 164 (361)
Q Consensus 115 agVyfN~~v~~~g--~~iKYGVis~~~l~~DL~~W~~lYlaGRlqKPV~il~ 164 (361)
...+ ..+..+|-++.+..+++.+=.++-.-==-|-|.+++|
T Consensus 80 ---------~l~drLL~ISv~ve~l~~We~E~~~Pe~~s~~lp~~~~~~~~w 122 (272)
T 4ebj_A 80 ---------PVGDRLVHISAAVEWVTGWERDTVDPSSWSYGLPTQETTRLMW 122 (272)
T ss_dssp ---------EETTEEEEEEEEEEEHHHHHHGGGSCCSSSTTCCEEEEEEEEE
T ss_pred ---------HHHHHHHHhccccccccchhhcccCccccccCCCcccceeeee
Confidence 1112 4677788888888888776555444434466667777
No 9
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=39.49 E-value=53 Score=26.87 Aligned_cols=76 Identities=9% Similarity=0.096 Sum_probs=49.2
Q ss_pred eeHHHHHHHHhccccchhhcccccccccccC-ChhHHHHHHHHHHHHHHHH------HHcCCCCCCHHHHHHHHHcCccC
Q 037930 135 VRMDDLISDILNWKRFYLSGRLQKPVQILAD-NLDIGNANSVNLRSALSAA------LLLLPSKFTQEDLFAKVCSLSYM 207 (361)
Q Consensus 135 is~~~l~~DL~~W~~lYlaGRlqKPV~il~~-~~~i~~a~~~NL~sAl~~A------LLlLP~~Fte~~Ly~~I~~LSY~ 207 (361)
+..++|.++|.. . -.||-++.. ++-+..--...++.++... ..-+...++..+|.....++|..
T Consensus 4 ~~~~~l~~~l~~--------~-~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~s~slF 74 (140)
T 1jql_B 4 LYPEQLRAQLNE--------G-LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLF 74 (140)
T ss_dssp CCGGGHHHHHHH--------C-CCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCSTTCCHHHHHHHHHCCCTT
T ss_pred CCHHHHHHHHhc--------c-CCceEEEEcCcHHHHHHHHHHHHHHHHHCCCcceeEEEecCCCCHHHHHHHHhcCCCC
Confidence 456777777642 1 469988884 4444333333444433322 12233368899999999999999
Q ss_pred CccccccccChh
Q 037930 208 GDLRMLFAEDKN 219 (361)
Q Consensus 208 GD~RM~~gEn~~ 219 (361)
||=|.++-++++
T Consensus 75 ~~rrlV~v~~~~ 86 (140)
T 1jql_B 75 ASRQTLLLLLPE 86 (140)
T ss_dssp CCCEEEEEECCT
T ss_pred CCCEEEEEECCC
Confidence 999999866653
No 10
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=38.64 E-value=37 Score=27.37 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=30.3
Q ss_pred eeecceeecCCeeeEEeeeeHHHHHHHHhc--------cccchhhcccccccccccCChhHHHH
Q 037930 117 VHFNPFVTWNDRLLKYGVVRMDDLISDILN--------WKRFYLSGRLQKPVQILADNLDIGNA 172 (361)
Q Consensus 117 VyfN~~v~~~g~~iKYGVis~~~l~~DL~~--------W~~lYlaGRlqKPV~il~~~~~i~~a 172 (361)
+..-|.+.-+|+. .|+|+..|+.+-+.. |...-+.--|.+|+..+..+..+.+|
T Consensus 47 ~~~~pVvd~~~~l--vGivt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a 108 (159)
T 1yav_A 47 YTAIPVLDPSYRL--HGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKG 108 (159)
T ss_dssp CSEEEEECTTCBE--EEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBCSCCEEETTSBHHHH
T ss_pred CcEEEEECCCCCE--EEEeEHHHHHHHhhhhcccchhhhccCCHHHhcCCCCceEcCCCCHHHH
Confidence 3344555545544 599999999987755 33444444444444444444444443
No 11
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=34.29 E-value=57 Score=25.14 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=29.6
Q ss_pred HHHHHh-cCCCceEEEEecceeccCCCCCC-CceEEEEecCCcchH
Q 037930 38 LASFLK-VIPPVEFCCVYGSSLHPNNKDKS-AMVDYVLGVSDPQQW 81 (361)
Q Consensus 38 l~~il~-~~~pi~~afaYGSgVf~q~~~~~-~miDfI~~V~d~~~w 81 (361)
+...+. .+++ ..+.-|||-++... ..+ .-||+.+.++++..+
T Consensus 7 i~~~l~~~~~~-~~v~LFGS~ArG~~-~~~~SDiDllV~~~~~~~~ 50 (96)
T 1ylq_A 7 IKEITKKDVQD-AEIYLYGSVVEGDY-SIGLSDIDVAIVSDVFEDR 50 (96)
T ss_dssp HHHHHHHHCTT-CEEEEESHHHHCCS-SSCCCSEEEEEECGGGGSH
T ss_pred HHHHHHHHcCC-cEEEEEEEEEeCCC-CCCCCceEEEEEeCCCCCH
Confidence 444444 4666 88999999999763 344 689999988764433
No 12
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=34.21 E-value=52 Score=26.25 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=32.3
Q ss_pred CceeecceeecCCeeeEEeeeeHHHHHHHHhc-------cccchhhcccccccccccCChhHHH
Q 037930 115 VGVHFNPFVTWNDRLLKYGVVRMDDLISDILN-------WKRFYLSGRLQKPVQILADNLDIGN 171 (361)
Q Consensus 115 agVyfN~~v~~~g~~iKYGVis~~~l~~DL~~-------W~~lYlaGRlqKPV~il~~~~~i~~ 171 (361)
.++..-|.+.-+|+. .|+|+..|+.+-+.. |...-+.--|.+|+..+..+..+..
T Consensus 46 ~~~~~~~Vvd~~~~~--~Giit~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 107 (156)
T 3ctu_A 46 MTYTRVPVVTDEKQF--VGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKTDVAVVSPDFTITE 107 (156)
T ss_dssp CSSSEEEEECC-CBE--EEEEEHHHHHHHHHHHTCCHHHHTTSBGGGGCBCSCCCBCSSCCHHH
T ss_pred CCCceEeEECCCCEE--EEEEcHHHHHHHHHhccccccccccCcHHHhccCCceeeCCCCcHHH
Confidence 345555666545554 499999999876542 3345555556566555554444443
No 13
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=33.79 E-value=59 Score=26.24 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=35.0
Q ss_pred eeecceeecCCeeeEEeeeeHHHHHHHH---hccccchhhccccc--ccccccCChhHHHHHH
Q 037930 117 VHFNPFVTWNDRLLKYGVVRMDDLISDI---LNWKRFYLSGRLQK--PVQILADNLDIGNANS 174 (361)
Q Consensus 117 VyfN~~v~~~g~~iKYGVis~~~l~~DL---~~W~~lYlaGRlqK--PV~il~~~~~i~~a~~ 174 (361)
+.+-|.+.-+|+. .|+|+..|+.+-+ ..|...-+.--|.+ |+..+..+..+.+|..
T Consensus 47 ~~~~~Vvd~~~~~--~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~ 107 (159)
T 3fv6_A 47 VGTLFVVDRDAVL--VGVLSRKDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAK 107 (159)
T ss_dssp CSEEEEECTTSCE--EEEEEHHHHHHHHTSCSCTTTCBGGGTSEETTSCCCBCTTSBHHHHHH
T ss_pred CCEEEEEcCCCcE--EEEEeHHHHHHHhhccCcccCcCHHHHHcCCCCcEEECCCCCHHHHHH
Confidence 3444555545554 4999999999876 34555556666665 5555655555655543
No 14
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=33.47 E-value=63 Score=24.37 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=35.2
Q ss_pred ceeecceeecCCeeeEEeeeeHHHHHHHHhccccchhhcccccccccccCChhHHHHHH
Q 037930 116 GVHFNPFVTWNDRLLKYGVVRMDDLISDILNWKRFYLSGRLQKPVQILADNLDIGNANS 174 (361)
Q Consensus 116 gVyfN~~v~~~g~~iKYGVis~~~l~~DL~~W~~lYlaGRlqKPV~il~~~~~i~~a~~ 174 (361)
++.+-|.+..+|+. .|+|+..|+.+-+..... -+.-=|.+|+..+..+..+.+|.+
T Consensus 31 ~~~~~~Vvd~~~~~--~G~vt~~dl~~~~~~~~~-~v~~~~~~~~~~v~~~~~l~~~~~ 86 (122)
T 3kpb_A 31 NINHLPIVDEHGKL--VGIITSWDIAKALAQNKK-TIEEIMTRNVITAHEDEPVDHVAI 86 (122)
T ss_dssp TCSCEEEECTTSBE--EEEECHHHHHHHHHTTCC-BGGGTSBSSCCCEETTSBHHHHHH
T ss_pred CCCeEEEECCCCCE--EEEEEHHHHHHHHHhccc-CHHHHhcCCCeEECCCCCHHHHHH
Confidence 33444555545554 499999999988766544 455556666666665666665543
No 15
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=33.16 E-value=45 Score=26.55 Aligned_cols=56 Identities=7% Similarity=0.001 Sum_probs=35.2
Q ss_pred eeecceeecCCeeeEEeeeeHHHHHHHHh---ccccchhhcccccccccccCChhHHHHHH
Q 037930 117 VHFNPFVTWNDRLLKYGVVRMDDLISDIL---NWKRFYLSGRLQKPVQILADNLDIGNANS 174 (361)
Q Consensus 117 VyfN~~v~~~g~~iKYGVis~~~l~~DL~---~W~~lYlaGRlqKPV~il~~~~~i~~a~~ 174 (361)
+.+-|.+..+|+. .|+|+..|+.+-+. +|...-+.--|.+|+..+..+..+.+|..
T Consensus 61 ~~~~~Vvd~~~~~--~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~ 119 (149)
T 3k2v_A 61 LGMTAICDDDMNI--IGIFTDGDLRRVFDTGVDMRDASIADVMTRGGIRIRPGTLAVDALN 119 (149)
T ss_dssp SSEEEEECTTCBE--EEEEEHHHHHHHHCSSSCCTTCBHHHHSEESCCEECTTCBHHHHHH
T ss_pred CcEEEEECCCCcE--EEEecHHHHHHHHhcCCCcccCcHHHHcCCCCeEECCCCCHHHHHH
Confidence 3444555545554 49999999998664 34455566666666666665656665544
No 16
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=32.36 E-value=11 Score=38.63 Aligned_cols=18 Identities=50% Similarity=1.049 Sum_probs=16.0
Q ss_pred cccccceecCceEEeCcc
Q 037930 10 KSENCIRYKDGIIYLTPS 27 (361)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (361)
.+|-|++|-||++|||-+
T Consensus 339 AsEPCvkyYdgvLyLtTR 356 (670)
T 3ju4_A 339 ASEPCIKYYDGVLYLITR 356 (670)
T ss_dssp EEEEEEEEETTEEEEEEE
T ss_pred cccchhhhhCCEEEEEec
Confidence 589999999999999854
No 17
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=31.16 E-value=19 Score=28.02 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCCceEEEEecceeccCCCCCCCceEEEEecCCcc
Q 037930 35 KAELASFLKVIPPVEFCCVYGSSLHPNNKDKSAMVDYVLGVSDPQ 79 (361)
Q Consensus 35 ~~~l~~il~~~~pi~~afaYGSgVf~q~~~~~~miDfI~~V~d~~ 79 (361)
.+.+..+.+.++ +..++-|||-+.... ..+.-||+.+.++.+.
T Consensus 13 ~~~i~~l~~~~~-v~~v~LFGS~arG~~-~~~SDiDl~V~~~~~~ 55 (98)
T 1wot_A 13 REAVLSLCARHG-AVRVRVFGSVARGEA-REDSDLDLLVAFEEGR 55 (98)
T ss_dssp HHHHHHHHHHHT-CSSCEECSHHHHTCC-CTTCCCEEEECCCSSC
T ss_pred HHHHHHHHHHcC-CcEEEEEccccCCCC-CCCCCEEEEEEeCCCC
Confidence 445666666664 788999999998763 3456899998877543
No 18
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=31.04 E-value=50 Score=26.21 Aligned_cols=52 Identities=27% Similarity=0.416 Sum_probs=33.6
Q ss_pred cceeecC-CeeeEEeeeeHHHHHHHHhccccchhhcccccccccccCChhHHHHHH
Q 037930 120 NPFVTWN-DRLLKYGVVRMDDLISDILNWKRFYLSGRLQKPVQILADNLDIGNANS 174 (361)
Q Consensus 120 N~~v~~~-g~~iKYGVis~~~l~~DL~~W~~lYlaGRlqKPV~il~~~~~i~~a~~ 174 (361)
-|.+.-+ |+. .|+|+..|+.+-+..-...-+..-| +|+..+..+..+.+|..
T Consensus 59 ~pVvd~~~~~l--vGivt~~dl~~~~~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~ 111 (148)
T 3lv9_A 59 YPVCRKNKDDI--LGFVHIRDLYNQKINENKIELEEIL-RDIIYISENLTIDKALE 111 (148)
T ss_dssp EEEESSSTTSE--EEEEEHHHHHHHHHHHSCCCGGGTC-BCCEEEETTSBHHHHHH
T ss_pred EEEEcCCCCcE--EEEEEHHHHHHHHhcCCCccHHHhc-CCCeEECCCCCHHHHHH
Confidence 3555444 444 4999999998875443355566666 67666766666766654
No 19
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=28.42 E-value=71 Score=25.33 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=33.6
Q ss_pred ceeecceeecCCeeeEEeeeeHHHHHHHHhc--------cccchhhcccccccccccCChhHHHHHH
Q 037930 116 GVHFNPFVTWNDRLLKYGVVRMDDLISDILN--------WKRFYLSGRLQKPVQILADNLDIGNANS 174 (361)
Q Consensus 116 gVyfN~~v~~~g~~iKYGVis~~~l~~DL~~--------W~~lYlaGRlqKPV~il~~~~~i~~a~~ 174 (361)
++..-|.+.-+|+. .|+|+..|+.+-+.. |...-+.--|.+|+..+..+..+..|..
T Consensus 43 ~~~~~pVvd~~~~~--~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~ 107 (157)
T 2emq_A 43 GYSAIPVLDTSYKL--HGLISMTMMMDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVG 107 (157)
T ss_dssp SSSEEEEECTTCCE--EEEEEHHHHHHHSBCSSSBCGGGGGTCBGGGTCBCCCCEEETTSBHHHHHH
T ss_pred CceEEEEEcCCCCE--EEEeeHHHHHHHHhcccccchHHhcCCcHHHHhCCCCceecCCCcHHHHHH
Confidence 34444555545554 699999999887643 3444455555555555555555555443
No 20
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=27.06 E-value=93 Score=23.84 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=32.1
Q ss_pred eeecceeecCCeeeEEeeeeHHHHHHHHhc--cccchhhcccccccccccCChhHHHHHH
Q 037930 117 VHFNPFVTWNDRLLKYGVVRMDDLISDILN--WKRFYLSGRLQKPVQILADNLDIGNANS 174 (361)
Q Consensus 117 VyfN~~v~~~g~~iKYGVis~~~l~~DL~~--W~~lYlaGRlqKPV~il~~~~~i~~a~~ 174 (361)
+.+=|.+. +|+. .|+|+..|+.+-+.. +...-+.--|.+|+..+..+..+..|.+
T Consensus 35 ~~~~~Vvd-~~~~--~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~ 91 (133)
T 2ef7_A 35 IGSVIVVD-GNKP--VGIITERDIVKAIGKGKSLETKAEEFMTASLITIREDSPITGALA 91 (133)
T ss_dssp CSEEEEEE-TTEE--EEEEEHHHHHHHHHTTCCTTCBGGGTSEECCCCEETTSBHHHHHH
T ss_pred CCEEEEEE-CCEE--EEEEcHHHHHHHHhcCCCcccCHHHHcCCCCEEECCCCCHHHHHH
Confidence 44456666 6655 499999999875443 2233344444455555555555665544
No 21
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=26.39 E-value=96 Score=23.93 Aligned_cols=55 Identities=9% Similarity=0.066 Sum_probs=32.8
Q ss_pred ecceeecCCeeeEEeeeeHHHHHHHHhc---cccchhhcccccccccccCChhHHHHHHH
Q 037930 119 FNPFVTWNDRLLKYGVVRMDDLISDILN---WKRFYLSGRLQKPVQILADNLDIGNANSV 175 (361)
Q Consensus 119 fN~~v~~~g~~iKYGVis~~~l~~DL~~---W~~lYlaGRlqKPV~il~~~~~i~~a~~~ 175 (361)
.-|.+.-+|+. .|+|+..|+.+-+.. +...-+.-=|.+|+..+..+..+.+|.+.
T Consensus 40 ~~~Vvd~~~~~--~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~ 97 (138)
T 2yzi_A 40 SLVVINDDGNV--VGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLITANVNTPLGEVLRK 97 (138)
T ss_dssp EEEEECTTSCE--EEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSCCEEETTSBHHHHHHH
T ss_pred EEEEEcCCCcE--EEEEeHHHHHHHHHhcCCcccCCHHHHhhCCCeEECCCCcHHHHHHH
Confidence 33555445554 599999999754322 44445555566666666666666665543
No 22
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=25.05 E-value=89 Score=25.70 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=36.4
Q ss_pred ceeecceeecC-CeeeEEeeeeHHHHHHHHhccccchhhcccccccccccCChhHHHHHH
Q 037930 116 GVHFNPFVTWN-DRLLKYGVVRMDDLISDILNWKRFYLSGRLQKPVQILADNLDIGNANS 174 (361)
Q Consensus 116 gVyfN~~v~~~-g~~iKYGVis~~~l~~DL~~W~~lYlaGRlqKPV~il~~~~~i~~a~~ 174 (361)
++-.-|.+.-+ |+. .|+|+..|+.+-+..-...-+.-=| +|+..+..+..+..|..
T Consensus 74 ~~~~~pVvd~~~~~l--vGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~ 130 (172)
T 3lhh_A 74 PHSRFPVCRNNVDDM--VGIISAKQLLSESIAGERLELVDLV-KNCNFVPNSLSGMELLE 130 (172)
T ss_dssp CCSEEEEESSSTTSE--EEEEEHHHHHHHHHTTCCCCGGGGC-BCCEEEETTCCHHHHHH
T ss_pred CCCEEEEEeCCCCeE--EEEEEHHHHHHHHhhcCcccHHHHh-cCCeEeCCCCCHHHHHH
Confidence 33344555544 444 4999999999887655555566666 66666666666666554
No 23
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=24.91 E-value=1.1e+02 Score=23.79 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=33.4
Q ss_pred eeecceeecCCeeeEEeeeeHHHHHHHHhc--cccchhhcccccccccccCChhHHHHHHH
Q 037930 117 VHFNPFVTWNDRLLKYGVVRMDDLISDILN--WKRFYLSGRLQKPVQILADNLDIGNANSV 175 (361)
Q Consensus 117 VyfN~~v~~~g~~iKYGVis~~~l~~DL~~--W~~lYlaGRlqKPV~il~~~~~i~~a~~~ 175 (361)
+.+-|.+.-+|..-=.|+|+..|+.+-+.. +...-+.--|.+|+..+..+ .+.+|...
T Consensus 36 ~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v~~~-~l~~a~~~ 95 (141)
T 2rih_A 36 VGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPITVLDTD-PVHVAAEK 95 (141)
T ss_dssp CSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCCEEETTS-BHHHHHHH
T ss_pred CCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCCCeEEcCC-CHHHHHHH
Confidence 334455554441122699999999886543 23344555556666666656 66665543
No 24
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=23.84 E-value=95 Score=25.05 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=17.0
Q ss_pred ecceeecCCeeeEEeeeeHHHHHHHHh
Q 037930 119 FNPFVTWNDRLLKYGVVRMDDLISDIL 145 (361)
Q Consensus 119 fN~~v~~~g~~iKYGVis~~~l~~DL~ 145 (361)
.-|.+.-+|+. .|+|+..|+.+-+.
T Consensus 38 ~~pVvd~~~~l--vGivt~~dl~~~~~ 62 (160)
T 2o16_A 38 HVPIVDANKKL--LGIVSQRDLLAAQE 62 (160)
T ss_dssp EEEEECTTCBE--EEEEEHHHHHHHHH
T ss_pred EEEEEcCCCcE--EEEEeHHHHHHHHH
Confidence 33555544554 59999999987654
No 25
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=22.62 E-value=1.3e+02 Score=22.45 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=31.5
Q ss_pred ceeecceeecCCeeeEEeeeeHHHHHHHHhc---cccchhhcccccccccccCChhHHHHH
Q 037930 116 GVHFNPFVTWNDRLLKYGVVRMDDLISDILN---WKRFYLSGRLQKPVQILADNLDIGNAN 173 (361)
Q Consensus 116 gVyfN~~v~~~g~~iKYGVis~~~l~~DL~~---W~~lYlaGRlqKPV~il~~~~~i~~a~ 173 (361)
++.+-|.++ +|+. .|+|+..|+.+-+.+ +...-+.-=|.+|+..+..+..+.+|.
T Consensus 31 ~~~~~~Vvd-~~~~--~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 88 (125)
T 1pbj_A 31 AKGSSVVVK-EGVR--VGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAA 88 (125)
T ss_dssp CCCEEEEEE-TTEE--EEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEECTTSCHHHHH
T ss_pred CCCEEEEEe-CCee--EEEEeHHHHHHHHhcCCcccccCHHHHcCCCCeEECCCCCHHHHH
Confidence 344556777 6665 599999999865532 123334444445555555454555444
No 26
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=22.36 E-value=73 Score=25.50 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=29.7
Q ss_pred EeeeeHHHHHHHHhccccchhhcccccccccccCChhHHHHHH
Q 037930 132 YGVVRMDDLISDILNWKRFYLSGRLQKPVQILADNLDIGNANS 174 (361)
Q Consensus 132 YGVis~~~l~~DL~~W~~lYlaGRlqKPV~il~~~~~i~~a~~ 174 (361)
.|+|+..|+.+-+......-+.--| +|+..+..+..+..|..
T Consensus 68 vGivt~~dl~~~~~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~ 109 (153)
T 3oco_A 68 IGYAYNYDIVRQARIDDKAKISTIM-RDIVSVPENMKVPDVME 109 (153)
T ss_dssp EEEEEHHHHHHHHHHHTTSBGGGTC-BCCEEEETTSBHHHHHH
T ss_pred EEEEEHHHHHhHHhcCCCCcHHHHh-CCCeEECCCCCHHHHHH
Confidence 5999999999876655555666666 67666766666666554
No 27
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=21.34 E-value=71 Score=26.72 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=43.7
Q ss_pred ceeecC-CeeeEEeeeeHHHHHHHHhccccchhhcccccccccccCChhHHHHHHHHHHHHHHHHHHcCCCC------CC
Q 037930 121 PFVTWN-DRLLKYGVVRMDDLISDILNWKRFYLSGRLQKPVQILADNLDIGNANSVNLRSALSAALLLLPSK------FT 193 (361)
Q Consensus 121 ~~v~~~-g~~iKYGVis~~~l~~DL~~W~~lYlaGRlqKPV~il~~~~~i~~a~~~NL~sAl~~ALLlLP~~------Ft 193 (361)
|.+.-+ |+. .|+|+..|+.+-+..-...-+. |.+|+..+..+..+..|...=..+-++. ++..-+. .|
T Consensus 73 pVvd~~~~~l--vGivt~~Dl~~~~~~~~~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~-~~Vvde~g~lvGiIT 147 (173)
T 3ocm_A 73 PVCRGSLDEV--VGIGRAKDLVADLITEGRVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQL-VLVADEFGAIEGLVT 147 (173)
T ss_dssp EEESSSTTSE--EEEEEHHHHHHHHHHHSSCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCC-EEEECTTCCEEEEEC
T ss_pred EEEeCCCCCE--EEEEEHHHHHHHHhcCCcchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeE-EEEEeCCCCEEEEEe
Confidence 444433 343 5999999998776544444455 6677766766666766654322221111 1112221 36
Q ss_pred HHHHHHHHHc
Q 037930 194 QEDLFAKVCS 203 (361)
Q Consensus 194 e~~Ly~~I~~ 203 (361)
..|+...+++
T Consensus 148 ~~Dil~~l~~ 157 (173)
T 3ocm_A 148 PIDVFEAIAG 157 (173)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 7777777765
Done!