Query 037933
Match_columns 121
No_of_seqs 109 out of 1193
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.2 2.9E-10 6.2E-15 86.9 10.3 32 90-121 689-721 (968)
2 KOG1187 Serine/threonine prote 99.1 6.7E-11 1.5E-15 81.7 4.3 45 77-121 61-105 (361)
3 KOG3653 Transforming growth fa 98.7 3.4E-08 7.5E-13 69.3 5.8 25 96-121 215-239 (534)
4 KOG2052 Activin A type IB rece 98.3 9.6E-07 2.1E-11 61.9 4.5 28 93-121 213-240 (513)
5 KOG0196 Tyrosine kinase, EPH ( 98.1 1.6E-06 3.5E-11 64.5 1.9 43 79-121 608-663 (996)
6 KOG1025 Epidermal growth facto 97.6 0.00018 3.9E-09 54.6 6.0 29 93-121 698-731 (1177)
7 KOG0193 Serine/threonine prote 97.3 0.00013 2.8E-09 53.3 2.1 27 93-121 394-420 (678)
8 PLN03224 probable serine/threo 97.1 0.00037 8E-09 50.6 2.8 24 89-112 143-166 (507)
9 KOG0658 Glycogen synthase kina 97.0 0.00042 9.2E-09 47.7 2.2 29 93-121 26-55 (364)
10 cd05144 RIO2_C RIO kinase fami 96.6 0.003 6.6E-08 40.1 3.5 28 94-121 18-45 (198)
11 PLN03225 Serine/threonine-prot 96.5 0.0022 4.7E-08 47.3 2.5 33 89-121 130-167 (566)
12 PRK09188 serine/threonine prot 96.4 0.003 6.5E-08 44.2 2.9 31 91-121 18-50 (365)
13 PTZ00284 protein kinase; Provi 96.3 0.0018 3.9E-08 46.4 1.4 33 89-121 127-160 (467)
14 KOG0201 Serine/threonine prote 96.1 0.0044 9.5E-08 43.9 2.2 29 93-121 15-44 (467)
15 PF08693 SKG6: Transmembrane a 96.1 0.012 2.7E-07 27.6 3.0 20 35-54 14-33 (40)
16 TIGR01982 UbiB 2-polyprenylphe 96.0 0.0055 1.2E-07 43.9 2.5 26 96-121 122-147 (437)
17 KOG0192 Tyrosine kinase specif 96.0 0.0045 9.8E-08 43.3 2.0 25 97-121 47-71 (362)
18 PF03109 ABC1: ABC1 family; I 95.9 0.0022 4.8E-08 37.8 0.2 29 92-121 13-41 (119)
19 cd07879 STKc_p38delta_MAPK13 C 95.8 0.012 2.5E-07 40.5 3.3 31 91-121 15-46 (342)
20 cd06639 STKc_myosinIIIB Cataly 95.7 0.0051 1.1E-07 41.0 1.4 41 81-121 12-53 (291)
21 KOG4236 Serine/threonine prote 95.7 0.0064 1.4E-07 44.6 1.7 28 93-121 567-595 (888)
22 smart00090 RIO RIO-like kinase 95.6 0.013 2.8E-07 38.6 2.9 27 95-121 32-60 (237)
23 PTZ00036 glycogen synthase kin 95.5 0.011 2.3E-07 42.3 2.4 31 91-121 66-97 (440)
24 cd06638 STKc_myosinIIIA Cataly 95.4 0.0073 1.6E-07 40.1 1.3 40 82-121 9-49 (286)
25 PLN00034 mitogen-activated pro 95.4 0.012 2.6E-07 40.6 2.3 27 95-121 78-105 (353)
26 KOG0580 Serine/threonine prote 95.4 0.018 3.8E-07 38.2 2.8 31 91-121 22-53 (281)
27 PLN03150 hypothetical protein; 95.4 0.032 6.9E-07 41.8 4.5 17 3-21 522-538 (623)
28 PHA02882 putative serine/threo 95.3 0.015 3.2E-07 39.1 2.4 23 92-114 13-35 (294)
29 KOG0194 Protein tyrosine kinas 95.3 0.0077 1.7E-07 43.5 1.1 30 92-121 158-192 (474)
30 PTZ00283 serine/threonine prot 95.2 0.015 3.3E-07 42.3 2.4 30 92-121 33-63 (496)
31 cd06636 STKc_MAP4K4_6 Catalyti 95.2 0.019 4.2E-07 38.0 2.7 40 82-121 7-47 (282)
32 KOG0663 Protein kinase PITSLRE 95.2 0.0088 1.9E-07 41.4 1.0 31 91-121 76-107 (419)
33 KOG0591 NIMA (never in mitosis 95.1 0.0078 1.7E-07 40.8 0.6 25 97-121 25-50 (375)
34 PTZ00263 protein kinase A cata 95.1 0.018 3.9E-07 39.4 2.3 30 92-121 19-49 (329)
35 cd07877 STKc_p38alpha_MAPK14 C 95.1 0.022 4.8E-07 39.2 2.7 38 84-121 10-48 (345)
36 cd05104 PTKc_Kit Catalytic dom 95.0 0.018 4E-07 40.1 2.4 30 92-121 36-71 (375)
37 KOG0594 Protein kinase PCTAIRE 95.0 0.018 3.9E-07 39.5 2.1 25 97-121 17-42 (323)
38 KOG0600 Cdc2-related protein k 95.0 0.0084 1.8E-07 43.4 0.5 29 93-121 119-148 (560)
39 cd05596 STKc_ROCK Catalytic do 95.0 0.012 2.5E-07 41.1 1.2 31 91-121 43-74 (370)
40 KOG1163 Casein kinase (serine/ 94.9 0.023 4.9E-07 38.0 2.4 29 93-121 17-46 (341)
41 cd05621 STKc_ROCK2 Catalytic d 94.9 0.019 4.2E-07 40.0 2.2 31 91-121 43-74 (370)
42 KOG0575 Polo-like serine/threo 94.9 0.027 5.9E-07 41.5 2.9 29 93-121 20-49 (592)
43 cd05622 STKc_ROCK1 Catalytic d 94.9 0.018 4E-07 40.1 2.0 37 85-121 37-74 (371)
44 cd07878 STKc_p38beta_MAPK11 Ca 94.9 0.038 8.3E-07 37.8 3.5 30 92-121 16-46 (343)
45 KOG1026 Nerve growth factor re 94.8 0.049 1.1E-06 41.5 4.1 26 96-121 491-522 (774)
46 PHA02988 hypothetical protein; 94.7 0.051 1.1E-06 36.3 3.8 38 78-121 12-49 (283)
47 KOG4250 TANK binding protein k 94.6 0.012 2.6E-07 44.0 0.6 26 96-121 18-44 (732)
48 KOG1166 Mitotic checkpoint ser 94.6 0.024 5.2E-07 44.3 2.1 29 93-121 700-728 (974)
49 KOG0197 Tyrosine kinases [Sign 94.6 0.022 4.8E-07 41.0 1.8 25 97-121 212-236 (468)
50 PTZ00382 Variant-specific surf 94.6 0.067 1.5E-06 30.3 3.4 14 33-46 66-79 (96)
51 PF15102 TMEM154: TMEM154 prot 94.5 0.049 1.1E-06 33.1 2.9 11 35-45 58-68 (146)
52 PF14575 EphA2_TM: Ephrin type 94.4 0.031 6.7E-07 30.2 1.7 17 79-95 55-71 (75)
53 KOG1035 eIF-2alpha kinase GCN2 94.3 0.015 3.3E-07 46.1 0.6 35 87-121 475-510 (1351)
54 PRK04750 ubiB putative ubiquin 94.3 0.053 1.1E-06 40.0 3.2 29 92-121 121-150 (537)
55 cd07880 STKc_p38gamma_MAPK12 C 94.2 0.048 1E-06 37.5 2.8 31 91-121 15-46 (343)
56 cd06618 PKc_MKK7 Catalytic dom 94.2 0.05 1.1E-06 36.4 2.8 29 93-121 17-46 (296)
57 cd05106 PTKc_CSF-1R Catalytic 94.0 0.046 9.9E-07 38.2 2.4 30 92-121 39-74 (374)
58 PTZ00426 cAMP-dependent protei 94.0 0.041 9E-07 37.9 2.2 29 93-121 32-62 (340)
59 PHA03209 serine/threonine kina 94.0 0.063 1.4E-06 37.2 3.1 32 90-121 65-97 (357)
60 PF01102 Glycophorin_A: Glycop 93.9 0.039 8.4E-07 32.7 1.5 17 35-51 66-82 (122)
61 PF04478 Mid2: Mid2 like cell 93.8 0.035 7.7E-07 33.9 1.4 21 33-53 49-69 (154)
62 cd07876 STKc_JNK2 Catalytic do 93.7 0.058 1.3E-06 37.3 2.5 31 91-121 21-52 (359)
63 cd06607 STKc_TAO Catalytic dom 93.7 0.074 1.6E-06 35.8 2.9 29 93-121 17-46 (307)
64 KOG0605 NDR and related serine 93.6 0.078 1.7E-06 38.7 3.0 33 89-121 139-172 (550)
65 cd05105 PTKc_PDGFR_alpha Catal 93.6 0.071 1.5E-06 37.7 2.8 30 92-121 38-73 (400)
66 PHA03212 serine/threonine kina 93.5 0.087 1.9E-06 37.1 3.1 30 92-121 93-123 (391)
67 KOG0694 Serine/threonine prote 93.5 0.067 1.5E-06 40.1 2.5 32 90-121 367-399 (694)
68 cd06635 STKc_TAO1 Catalytic do 93.4 0.072 1.6E-06 36.1 2.5 29 93-121 27-56 (317)
69 KOG1095 Protein tyrosine kinas 93.3 0.064 1.4E-06 42.2 2.3 28 94-121 695-728 (1025)
70 KOG0577 Serine/threonine prote 93.3 0.036 7.8E-07 41.4 0.9 29 93-121 28-57 (948)
71 cd05107 PTKc_PDGFR_beta Cataly 93.3 0.067 1.4E-06 37.9 2.2 29 93-121 39-73 (401)
72 cd07865 STKc_CDK9 Catalytic do 93.2 0.085 1.9E-06 35.3 2.5 30 92-121 13-43 (310)
73 cd06656 STKc_PAK3 Catalytic do 93.1 0.1 2.2E-06 35.0 2.8 29 93-121 21-50 (297)
74 cd07875 STKc_JNK1 Catalytic do 93.0 0.096 2.1E-06 36.2 2.7 31 91-121 24-55 (364)
75 KOG0198 MEKK and related serin 93.0 0.09 1.9E-06 36.2 2.4 29 93-121 19-48 (313)
76 PHA03211 serine/threonine kina 93.0 0.1 2.3E-06 37.7 2.9 29 93-121 171-200 (461)
77 cd07874 STKc_JNK3 Catalytic do 93.0 0.095 2.1E-06 36.1 2.6 31 91-121 17-48 (355)
78 PRK09605 bifunctional UGMP fam 92.9 0.26 5.7E-06 36.3 4.9 24 93-116 335-358 (535)
79 KOG4258 Insulin/growth factor 92.7 0.058 1.3E-06 41.5 1.3 31 81-112 985-1015(1025)
80 cd05053 PTKc_FGFR Catalytic do 92.5 0.074 1.6E-06 35.4 1.6 30 92-121 13-48 (293)
81 cd07851 STKc_p38 Catalytic dom 92.1 0.13 2.8E-06 35.3 2.4 31 91-121 15-46 (343)
82 KOG1027 Serine/threonine prote 92.0 0.059 1.3E-06 41.4 0.6 28 93-121 511-539 (903)
83 cd07850 STKc_JNK Catalytic dom 92.0 0.17 3.7E-06 34.9 2.8 31 91-121 16-47 (353)
84 cd06633 STKc_TAO3 Catalytic do 91.8 0.2 4.3E-06 33.9 3.0 28 94-121 24-52 (313)
85 cd06657 STKc_PAK4 Catalytic do 91.5 0.19 4.1E-06 33.8 2.5 24 98-121 27-51 (292)
86 cd06647 STKc_PAK_I Catalytic d 91.2 0.27 5.8E-06 33.0 3.1 29 93-121 21-50 (293)
87 cd06614 STKc_PAK Catalytic dom 91.1 0.17 3.7E-06 33.6 2.0 32 90-121 18-50 (286)
88 KOG1006 Mitogen-activated prot 91.0 0.045 9.7E-07 37.0 -0.8 25 97-121 70-95 (361)
89 KOG4257 Focal adhesion tyrosin 90.9 0.18 3.9E-06 38.2 2.1 28 94-121 392-424 (974)
90 COG0661 AarF Predicted unusual 90.8 0.15 3.2E-06 37.6 1.6 29 92-121 127-155 (517)
91 cd06644 STKc_STK10_LOK Catalyt 90.8 0.29 6.2E-06 32.6 2.9 25 97-121 18-43 (292)
92 cd05055 PTKc_PDGFR Catalytic d 90.7 0.19 4.2E-06 33.8 2.0 31 91-121 35-71 (302)
93 KOG0032 Ca2+/calmodulin-depend 90.6 0.24 5.2E-06 35.1 2.5 25 97-121 41-66 (382)
94 KOG0199 ACK and related non-re 90.5 0.14 3E-06 39.2 1.3 25 97-121 116-144 (1039)
95 KOG0598 Ribosomal protein S6 k 90.4 0.22 4.8E-06 34.7 2.1 30 92-121 26-56 (357)
96 KOG4278 Protein tyrosine kinas 90.3 0.16 3.4E-06 38.5 1.4 30 92-121 268-298 (1157)
97 cd06659 STKc_PAK6 Catalytic do 90.2 0.32 7E-06 32.7 2.8 24 98-121 28-52 (297)
98 cd06654 STKc_PAK1 Catalytic do 90.1 0.35 7.5E-06 32.5 2.9 29 93-121 22-51 (296)
99 KOG0667 Dual-specificity tyros 89.9 0.34 7.4E-06 36.1 2.8 26 96-121 191-217 (586)
100 cd05101 PTKc_FGFR2 Catalytic d 89.9 0.3 6.6E-06 32.8 2.5 29 93-121 17-53 (304)
101 cd06634 STKc_TAO2 Catalytic do 89.8 0.23 4.9E-06 33.6 1.8 29 93-121 17-46 (308)
102 cd06648 STKc_PAK_II Catalytic 89.7 0.43 9.2E-06 31.8 3.0 29 93-121 21-50 (285)
103 PHA03390 pk1 serine/threonine- 89.7 0.64 1.4E-05 30.7 3.9 23 99-121 24-47 (267)
104 cd06655 STKc_PAK2 Catalytic do 89.5 0.32 7E-06 32.6 2.3 29 93-121 21-50 (296)
105 cd05098 PTKc_FGFR1 Catalytic d 89.1 0.43 9.3E-06 32.1 2.7 20 93-112 20-39 (307)
106 cd06658 STKc_PAK5 Catalytic do 88.9 0.49 1.1E-05 31.7 2.9 24 98-121 29-53 (292)
107 PF14610 DUF4448: Protein of u 88.8 0.39 8.5E-06 30.5 2.2 25 34-58 158-182 (189)
108 KOG0581 Mitogen-activated prot 88.8 0.4 8.6E-06 33.6 2.4 26 96-121 84-110 (364)
109 KOG0574 STE20-like serine/thre 88.7 0.064 1.4E-06 37.0 -1.4 25 97-121 39-64 (502)
110 KOG1151 Tousled-like protein k 88.5 0.065 1.4E-06 38.8 -1.6 26 96-121 468-494 (775)
111 PF02439 Adeno_E3_CR2: Adenovi 88.4 0.78 1.7E-05 21.3 2.5 18 36-53 6-23 (38)
112 KOG1164 Casein kinase (serine/ 88.2 0.49 1.1E-05 32.5 2.6 30 92-121 19-50 (322)
113 cd05099 PTKc_FGFR4 Catalytic d 88.1 0.34 7.4E-06 32.8 1.7 21 92-112 13-33 (314)
114 KOG0583 Serine/threonine prote 88.1 0.56 1.2E-05 33.1 2.8 29 93-121 19-48 (370)
115 KOG0660 Mitogen-activated prot 87.6 0.51 1.1E-05 33.0 2.3 28 94-121 25-53 (359)
116 PTZ00266 NIMA-related protein 87.2 0.35 7.5E-06 38.5 1.5 31 91-121 13-44 (1021)
117 KOG1167 Serine/threonine prote 87.1 0.19 4.2E-06 35.7 0.1 33 89-121 34-70 (418)
118 PF12877 DUF3827: Domain of un 86.7 1.3 2.9E-05 33.4 4.1 26 33-58 270-295 (684)
119 PF08374 Protocadherin: Protoc 86.2 2.4 5.2E-05 27.7 4.6 26 30-55 35-60 (221)
120 PF12273 RCR: Chitin synthesis 85.8 0.56 1.2E-05 28.0 1.6 7 59-65 22-28 (130)
121 KOG1094 Discoidin domain recep 85.4 0.73 1.6E-05 34.7 2.3 26 96-121 543-568 (807)
122 KOG0615 Serine/threonine prote 85.4 1 2.2E-05 32.4 2.8 26 96-121 177-203 (475)
123 KOG1165 Casein kinase (serine/ 85.2 0.65 1.4E-05 32.7 1.8 28 94-121 31-59 (449)
124 COG0478 RIO-like serine/threon 85.0 1 2.3E-05 30.7 2.7 25 97-121 97-121 (304)
125 PHA03207 serine/threonine kina 84.7 0.87 1.9E-05 32.0 2.4 30 92-121 93-125 (392)
126 KOG1235 Predicted unusual prot 83.8 1.2 2.5E-05 33.2 2.7 29 92-121 163-191 (538)
127 KOG1989 ARK protein kinase fam 83.0 1.2 2.7E-05 34.2 2.7 26 96-121 42-68 (738)
128 KOG0582 Ste20-like serine/thre 82.9 1.2 2.5E-05 32.4 2.4 28 94-121 29-57 (516)
129 KOG0592 3-phosphoinositide-dep 82.6 1 2.2E-05 33.4 2.0 33 89-121 71-104 (604)
130 cd05100 PTKc_FGFR3 Catalytic d 82.5 1.4 3E-05 30.1 2.6 20 93-112 14-33 (334)
131 PF06365 CD34_antigen: CD34/Po 82.2 4.2 9E-05 26.4 4.5 7 54-60 122-128 (202)
132 PHA03210 serine/threonine kina 81.2 1.1 2.4E-05 32.8 1.8 22 91-112 148-169 (501)
133 PF15050 SCIMP: SCIMP protein 81.1 1.2 2.6E-05 26.2 1.6 9 50-58 24-32 (133)
134 KOG1024 Receptor-like protein 81.0 8.5 0.00019 28.0 6.0 23 93-115 286-308 (563)
135 KOG4279 Serine/threonine prote 80.9 1.4 3E-05 34.3 2.2 25 97-121 581-606 (1226)
136 PF01299 Lamp: Lysosome-associ 80.7 1 2.2E-05 31.0 1.4 13 36-48 273-285 (306)
137 PTZ00267 NIMA-related protein 80.6 1.8 3.9E-05 31.4 2.7 29 93-121 69-99 (478)
138 PF01034 Syndecan: Syndecan do 79.6 0.69 1.5E-05 24.1 0.3 9 54-62 31-39 (64)
139 PF12191 stn_TNFRSF12A: Tumour 79.3 0.79 1.7E-05 27.2 0.5 6 54-59 98-103 (129)
140 KOG4721 Serine/threonine prote 79.1 0.78 1.7E-05 34.6 0.5 24 97-121 130-153 (904)
141 KOG0585 Ca2+/calmodulin-depend 78.9 1.9 4.2E-05 31.7 2.4 32 90-121 96-128 (576)
142 PF15345 TMEM51: Transmembrane 77.5 5.8 0.00012 26.2 4.0 10 80-89 124-133 (233)
143 PF14991 MLANA: Protein melan- 76.6 0.54 1.2E-05 27.4 -0.7 22 40-61 29-51 (118)
144 PF03302 VSP: Giardia variant- 76.4 2.7 5.9E-05 30.1 2.6 24 30-53 364-387 (397)
145 KOG0984 Mitogen-activated prot 75.3 1.1 2.4E-05 29.6 0.3 27 95-121 50-77 (282)
146 COG2112 Predicted Ser/Thr prot 74.2 2.5 5.5E-05 27.1 1.7 25 96-121 27-51 (201)
147 PHA03265 envelope glycoprotein 73.9 3.1 6.8E-05 29.2 2.2 10 53-62 368-377 (402)
148 PF05393 Hum_adeno_E3A: Human 73.1 6.2 0.00014 21.9 2.9 13 43-55 40-52 (94)
149 KOG0576 Mitogen-activated prot 72.7 1.2 2.6E-05 34.0 0.1 29 93-121 17-46 (829)
150 PRK10359 lipopolysaccharide co 72.3 3.3 7.1E-05 27.4 2.0 30 91-121 31-60 (232)
151 PF13095 FTA2: Kinetochore Sim 71.6 4.4 9.6E-05 26.4 2.4 30 91-121 37-67 (207)
152 KOG0200 Fibroblast/platelet-de 71.4 2.7 5.8E-05 31.8 1.6 26 96-121 301-334 (609)
153 KOG0666 Cyclin C-dependent kin 71.1 5.2 0.00011 28.1 2.8 23 92-114 25-47 (438)
154 KOG0983 Mitogen-activated prot 70.9 2.9 6.4E-05 28.8 1.6 24 98-121 99-123 (391)
155 KOG0669 Cyclin T-dependent kin 70.7 0.23 5E-06 33.6 -3.6 25 97-121 23-48 (376)
156 KOG0587 Traf2- and Nck-interac 70.3 2.7 5.8E-05 33.1 1.4 34 88-121 16-50 (953)
157 PF05568 ASFV_J13L: African sw 70.2 5 0.00011 24.6 2.3 6 38-43 34-39 (189)
158 PF15102 TMEM154: TMEM154 prot 70.0 4.5 9.7E-05 24.8 2.1 23 32-54 58-80 (146)
159 PF12768 Rax2: Cortical protei 69.7 13 0.00029 25.4 4.5 17 31-47 225-241 (281)
160 KOG0578 p21-activated serine/t 69.1 4.1 8.8E-05 30.4 2.1 29 93-121 275-304 (550)
161 PF12768 Rax2: Cortical protei 68.4 17 0.00037 24.9 4.8 21 33-53 231-251 (281)
162 PF11857 DUF3377: Domain of un 67.5 16 0.00034 19.7 3.6 21 33-53 29-49 (74)
163 KOG0986 G protein-coupled rece 66.7 2 4.3E-05 31.5 0.2 21 92-112 186-206 (591)
164 KOG0611 Predicted serine/threo 65.0 3.8 8.3E-05 29.9 1.3 24 98-121 60-84 (668)
165 PTZ00087 thrombosponding-relat 64.9 19 0.0004 24.6 4.3 20 32-51 295-314 (340)
166 PF06667 PspB: Phage shock pro 62.4 11 0.00025 20.3 2.5 6 48-53 17-22 (75)
167 KOG4645 MAPKKK (MAP kinase kin 62.2 4.4 9.4E-05 33.6 1.2 30 92-121 1236-1266(1509)
168 KOG0596 Dual specificity; seri 61.1 4 8.8E-05 30.7 0.8 25 97-121 367-391 (677)
169 PF05084 GRA6: Granule antigen 60.3 22 0.00049 22.3 3.8 18 43-60 157-174 (215)
170 PF15431 TMEM190: Transmembran 59.3 3.7 8.1E-05 23.8 0.3 26 35-60 61-86 (134)
171 PF14531 Kinase-like: Kinase-l 58.6 8.9 0.00019 26.3 2.1 28 94-121 15-43 (288)
172 PF09919 DUF2149: Uncharacteri 56.8 12 0.00026 21.0 2.1 19 100-120 71-90 (92)
173 KOG0607 MAP kinase-interacting 56.7 13 0.00028 26.4 2.6 35 82-121 74-109 (463)
174 KOG0610 Putative serine/threon 56.6 14 0.0003 26.9 2.8 26 96-121 82-108 (459)
175 COG1718 RIO1 Serine/threonine 56.3 12 0.00026 25.4 2.3 24 98-121 55-78 (268)
176 KOG0664 Nemo-like MAPK-related 55.9 7.4 0.00016 26.9 1.3 26 96-121 58-84 (449)
177 PRK01723 3-deoxy-D-manno-octul 55.3 17 0.00037 24.0 3.0 25 96-121 36-61 (239)
178 KOG0586 Serine/threonine prote 54.9 12 0.00026 28.3 2.4 30 92-121 57-87 (596)
179 KOG0696 Serine/threonine prote 54.6 6.9 0.00015 28.7 1.1 30 92-121 350-380 (683)
180 KOG0579 Ste20-like serine/thre 53.8 2.7 5.9E-05 32.4 -1.0 16 98-113 39-54 (1187)
181 PF02158 Neuregulin: Neureguli 53.6 4.4 9.5E-05 28.8 0.0 24 39-62 12-37 (404)
182 PF05337 CSF-1: Macrophage col 53.3 4.4 9.6E-05 27.5 0.0 26 35-60 227-252 (285)
183 COG4744 Uncharacterized conser 53.0 45 0.00098 19.5 4.4 26 93-120 84-112 (121)
184 PF12877 DUF3827: Domain of un 52.2 18 0.00038 27.8 2.9 31 35-65 268-299 (684)
185 PF12301 CD99L2: CD99 antigen 51.0 18 0.00038 22.9 2.4 20 36-55 117-136 (169)
186 PF04689 S1FA: DNA binding pro 50.3 37 0.0008 17.7 3.4 26 33-58 13-39 (69)
187 KOG0584 Serine/threonine prote 50.2 5.8 0.00013 30.1 0.2 17 96-112 45-61 (632)
188 KOG0612 Rho-associated, coiled 49.5 4.7 0.0001 32.9 -0.4 32 90-121 74-106 (1317)
189 KOG0695 Serine/threonine prote 47.5 9.1 0.0002 27.3 0.8 31 91-121 250-281 (593)
190 PF07204 Orthoreo_P10: Orthore 47.3 13 0.00027 21.0 1.2 6 18-23 19-24 (98)
191 KOG0616 cAMP-dependent protein 45.9 25 0.00053 24.7 2.6 29 93-121 46-75 (355)
192 PF07010 Endomucin: Endomucin; 45.5 45 0.00098 22.2 3.6 7 56-62 211-217 (259)
193 PF05283 MGC-24: Multi-glycosy 45.1 26 0.00055 22.5 2.5 23 32-54 156-178 (186)
194 PF15176 LRR19-TM: Leucine-ric 44.6 22 0.00049 20.3 1.9 8 92-99 86-93 (102)
195 PF03229 Alpha_GJ: Alphavirus 44.3 38 0.00083 20.0 2.9 19 35-53 85-103 (126)
196 KOG2345 Serine/threonine prote 44.3 14 0.0003 25.2 1.2 26 96-121 26-52 (302)
197 KOG0668 Casein kinase II, alph 42.4 8 0.00017 26.1 -0.1 25 97-121 44-69 (338)
198 PF02009 Rifin_STEVOR: Rifin/s 42.2 17 0.00038 25.1 1.5 13 54-66 274-286 (299)
199 KOG0670 U4/U6-associated splic 41.6 19 0.0004 27.4 1.6 24 98-121 439-463 (752)
200 KOG1345 Serine/threonine kinas 41.6 60 0.0013 22.7 3.9 29 93-121 26-55 (378)
201 KOG1152 Signal transduction se 41.1 30 0.00065 26.6 2.6 29 93-121 563-592 (772)
202 PRK08455 fliL flagellar basal 39.7 59 0.0013 20.7 3.5 13 35-47 19-31 (182)
203 COG3197 FixS Uncharacterized p 38.9 57 0.0012 16.7 3.1 10 37-46 5-14 (58)
204 PHA03281 envelope glycoprotein 37.7 1E+02 0.0023 23.5 4.8 16 97-112 622-637 (642)
205 PF05808 Podoplanin: Podoplani 36.8 11 0.00025 23.5 0.0 24 35-58 131-154 (162)
206 PF10873 DUF2668: Protein of u 36.3 77 0.0017 19.6 3.4 15 35-49 63-77 (155)
207 KOG4717 Serine/threonine prote 35.5 11 0.00023 28.6 -0.4 28 93-121 20-49 (864)
208 PF10661 EssA: WXG100 protein 34.5 45 0.00098 20.5 2.3 13 45-57 128-140 (145)
209 PF11770 GAPT: GRB2-binding ad 34.1 20 0.00044 22.1 0.8 9 38-46 12-20 (158)
210 PF01708 Gemini_mov: Geminivir 33.6 93 0.002 17.5 4.6 6 30-35 32-37 (91)
211 PF04971 Lysis_S: Lysis protei 32.6 46 0.001 17.6 1.8 6 54-59 53-58 (68)
212 PF05510 Sarcoglycan_2: Sarcog 31.6 34 0.00074 24.7 1.6 19 36-54 287-305 (386)
213 PRK09550 mtnK methylthioribose 31.6 57 0.0012 23.6 2.8 25 97-121 32-57 (401)
214 PRK14051 negative regulator Gr 31.5 51 0.0011 19.2 2.0 21 96-116 28-48 (123)
215 KOG3637 Vitronectin receptor, 30.9 66 0.0014 26.5 3.2 20 34-53 977-996 (1030)
216 PF08277 PAN_3: PAN-like domai 29.9 63 0.0014 16.5 2.2 19 103-121 52-70 (71)
217 PRK03427 cell division protein 29.8 70 0.0015 22.6 2.8 7 38-44 10-16 (333)
218 PF15012 DUF4519: Domain of un 28.0 43 0.00093 17.0 1.2 13 35-47 30-42 (56)
219 KOG1290 Serine/threonine prote 27.7 65 0.0014 24.3 2.5 26 96-121 83-109 (590)
220 PF11353 DUF3153: Protein of u 27.1 1.8E+02 0.0039 18.8 4.4 16 38-53 183-198 (209)
221 KOG1219 Uncharacterized conser 27.0 75 0.0016 29.3 3.0 6 54-59 4012-4017(4289)
222 KOG2270 Serine/threonine prote 26.7 67 0.0014 23.7 2.4 25 97-121 150-174 (520)
223 KOG3482 Small nuclear ribonucl 25.7 68 0.0015 17.2 1.7 15 98-112 21-35 (79)
224 PF15347 PAG: Phosphoprotein a 25.3 1.9E+02 0.0041 21.1 4.3 16 35-50 16-31 (428)
225 PF11694 DUF3290: Protein of u 24.5 1.2E+02 0.0026 18.7 2.9 8 105-112 116-123 (149)
226 PTZ00045 apical membrane antig 23.8 1.2E+02 0.0025 23.3 3.2 14 35-48 515-528 (595)
227 cd03690 Tet_II Tet_II: This su 23.5 48 0.001 17.9 1.0 21 99-119 17-37 (85)
228 KOG0690 Serine/threonine prote 23.2 46 0.001 23.8 1.1 30 92-121 169-199 (516)
229 KOG0671 LAMMER dual specificit 22.8 53 0.0012 23.8 1.3 25 97-121 95-120 (415)
230 PF07095 IgaA: Intracellular g 22.5 2.6E+02 0.0057 22.1 4.8 12 76-87 41-52 (705)
231 PF09716 ETRAMP: Malarial earl 22.2 73 0.0016 17.5 1.6 7 6-12 20-26 (84)
232 COG1862 YajC Preprotein transl 21.8 64 0.0014 18.4 1.3 9 102-110 55-63 (97)
233 PRK04335 cell division protein 21.4 1.1E+02 0.0025 21.4 2.7 8 36-43 7-14 (313)
234 PRK12396 5-methylribose kinase 21.1 1.2E+02 0.0025 22.2 2.7 25 97-121 35-60 (409)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.18 E-value=2.9e-10 Score=86.86 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=27.5
Q ss_pred hccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 90 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 90 ~~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
...+.+.++||+|+||.||+|.. .++..||||
T Consensus 689 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK 721 (968)
T PLN00113 689 LSSLKEENVISRGKKGASYKGKSIKNGMQFVVK 721 (968)
T ss_pred HhhCCcccEEccCCCeeEEEEEECCCCcEEEEE
Confidence 34578888999999999999987 578889987
No 2
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.12 E-value=6.7e-11 Score=81.68 Aligned_cols=45 Identities=53% Similarity=0.927 Sum_probs=42.7
Q ss_pred cccccCHHHHHHhhccCCcCceeccCCcceeEEEEeCCCCEEEeC
Q 037933 77 TWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
....|++.++..||++|+++|+||+|+||.||||.+++|..||||
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK 105 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVK 105 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEE
Confidence 566799999999999999999999999999999999999999998
No 3
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=98.72 E-value=3.4e-08 Score=69.29 Aligned_cols=25 Identities=44% Similarity=0.796 Sum_probs=22.3
Q ss_pred CceeccCCcceeEEEEeCCCCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
.++||+|+||.||||.| +++.||||
T Consensus 215 ~eli~~Grfg~V~KaqL-~~~~VAVK 239 (534)
T KOG3653|consen 215 LELIGRGRFGCVWKAQL-DNRLVAVK 239 (534)
T ss_pred HHHhhcCccceeehhhc-cCceeEEE
Confidence 34899999999999999 56899998
No 4
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.31 E-value=9.6e-07 Score=61.90 Aligned_cols=28 Identities=39% Similarity=0.771 Sum_probs=24.4
Q ss_pred CCcCceeccCCcceeEEEEeCCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
....+.||+|.||.|++|.+ .|..||||
T Consensus 213 I~L~e~IGkGRyGEVwrG~w-rGe~VAVK 240 (513)
T KOG2052|consen 213 IVLQEIIGKGRFGEVWRGRW-RGEDVAVK 240 (513)
T ss_pred eEEEEEecCccccceeeccc-cCCceEEE
Confidence 44467899999999999999 78899998
No 5
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=98.09 E-value=1.6e-06 Score=64.53 Aligned_cols=43 Identities=35% Similarity=0.567 Sum_probs=33.1
Q ss_pred cccCHHHHHHhhccCCc---------CceeccCCcceeEEEEeCC----CCEEEeC
Q 037933 79 RRTSYLDIQRATDEFNE---------CNLLGTGSFGSVYKGTISD----GTDVAIK 121 (121)
Q Consensus 79 ~~~~~~~l~~~~~~~~~---------~~~ig~g~~g~vykg~l~~----g~~vavK 121 (121)
+..+|+|.-.|..+|.. +.+||.|.||.||+|.|+- ...||||
T Consensus 608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIK 663 (996)
T KOG0196|consen 608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIK 663 (996)
T ss_pred CCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEe
Confidence 45788887777766643 6789999999999999822 3678887
No 6
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=97.63 E-value=0.00018 Score=54.58 Aligned_cols=29 Identities=48% Similarity=0.899 Sum_probs=22.7
Q ss_pred CCcCceeccCCcceeEEEEe-CCC----CEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDG----TDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g----~~vavK 121 (121)
+.+..+||+|.||+||||.+ +.| .+||+|
T Consensus 698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiK 731 (1177)
T KOG1025|consen 698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIK 731 (1177)
T ss_pred hhhhceeccccceeEEeeeEecCCceecceeEEE
Confidence 45566999999999999987 555 467765
No 7
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=97.34 E-value=0.00013 Score=53.32 Aligned_cols=27 Identities=48% Similarity=0.840 Sum_probs=21.5
Q ss_pred CCcCceeccCCcceeEEEEeCCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
+.....||+|.||+||||.+ .| .||||
T Consensus 394 v~l~~rIGsGsFGtV~Rg~w-hG-dVAVK 420 (678)
T KOG0193|consen 394 VLLGERIGSGSFGTVYRGRW-HG-DVAVK 420 (678)
T ss_pred hhccceeccccccceeeccc-cc-ceEEE
Confidence 44456899999999999998 44 46776
No 8
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=97.14 E-value=0.00037 Score=50.65 Aligned_cols=24 Identities=33% Similarity=0.706 Sum_probs=20.6
Q ss_pred hhccCCcCceeccCCcceeEEEEe
Q 037933 89 ATDEFNECNLLGTGSFGSVYKGTI 112 (121)
Q Consensus 89 ~~~~~~~~~~ig~g~~g~vykg~l 112 (121)
..++|...+.||+|+||.||+|..
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~ 166 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLR 166 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEe
Confidence 355788889999999999999974
No 9
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.00042 Score=47.68 Aligned_cols=29 Identities=41% Similarity=0.847 Sum_probs=24.3
Q ss_pred CCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+...+++|+|.||.||+|.+ ..+..||||
T Consensus 26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIK 55 (364)
T KOG0658|consen 26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIK 55 (364)
T ss_pred EEeeEEEeecccceEEEEEEcCCCceeEEE
Confidence 44567999999999999998 446899998
No 10
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=96.60 E-value=0.003 Score=40.08 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=24.5
Q ss_pred CcCceeccCCcceeEEEEeCCCCEEEeC
Q 037933 94 NECNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 94 ~~~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
...+.||+|++|.||++..++|..+|||
T Consensus 18 ~~~~~i~~G~~g~Vy~~~~~~g~~vavK 45 (198)
T cd05144 18 SLGNQIGVGKESDVYLALDPDGNPVALK 45 (198)
T ss_pred hcCCccccCcceEEEEEEcCCCCEEEEE
Confidence 3356899999999999999889999987
No 11
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=96.46 E-value=0.0022 Score=47.33 Aligned_cols=33 Identities=33% Similarity=0.613 Sum_probs=26.9
Q ss_pred hhccCCcCceeccCCcceeEEEEeCC-----CCEEEeC
Q 037933 89 ATDEFNECNLLGTGSFGSVYKGTISD-----GTDVAIK 121 (121)
Q Consensus 89 ~~~~~~~~~~ig~g~~g~vykg~l~~-----g~~vavK 121 (121)
..++|...+.||+|+||.||+|...+ +..+|||
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK 167 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLK 167 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEE
Confidence 34567778899999999999999844 5788886
No 12
>PRK09188 serine/threonine protein kinase; Provisional
Probab=96.43 E-value=0.003 Score=44.19 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=25.3
Q ss_pred ccCCcCceeccCCcceeEEEEeC--CCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTIS--DGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l~--~g~~vavK 121 (121)
..|...+.||+|+||.||+|... ++..+|||
T Consensus 18 ~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK 50 (365)
T PRK09188 18 ARFVETAVLKRDVFSTVERGYFAGDPGTARAVR 50 (365)
T ss_pred CCceEccEEeecCcEEEEEEEEcCCCCeEEEEE
Confidence 45777789999999999999874 56777886
No 13
>PTZ00284 protein kinase; Provisional
Probab=96.33 E-value=0.0018 Score=46.43 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=26.5
Q ss_pred hhccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 89 ATDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 89 ~~~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.++.|...+.||+|+||.||++.. ..+..||||
T Consensus 127 ~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK 160 (467)
T PTZ00284 127 STQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVK 160 (467)
T ss_pred CCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEE
Confidence 345566677899999999999986 446789987
No 14
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.07 E-value=0.0044 Score=43.95 Aligned_cols=29 Identities=45% Similarity=0.709 Sum_probs=22.9
Q ss_pred CCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
|.....||+|.||.||||.. .-+..||+|
T Consensus 15 ~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiK 44 (467)
T KOG0201|consen 15 YTKLELIGRGSFGEVYKAIDNKTKKVVAIK 44 (467)
T ss_pred cccchhccccccceeeeeeeccccceEEEE
Confidence 45556899999999999986 335678876
No 15
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=96.06 E-value=0.012 Score=27.63 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=9.0
Q ss_pred EeeehHHHHHHHHHHHHHHH
Q 037933 35 VLKYVLPLIVSTVLIVITII 54 (121)
Q Consensus 35 ~~~i~~~~~~~~~~~~~~~~ 54 (121)
...++++++++++++.++++
T Consensus 14 a~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 14 AVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEEechHHHHHHHHHHhh
Confidence 34445555444444433333
No 16
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=96.00 E-value=0.0055 Score=43.89 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=24.1
Q ss_pred CceeccCCcceeEEEEeCCCCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
.+-|++|++|.||+|.+.+|..||||
T Consensus 122 ~~plasaSigQVh~A~l~~G~~VaVK 147 (437)
T TIGR01982 122 EKPLAAASIAQVHRARLVDGKEVAVK 147 (437)
T ss_pred CcceeeeehhheEEEEecCCCEEEEE
Confidence 35799999999999999999999998
No 17
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=96.00 E-value=0.0045 Score=43.29 Aligned_cols=25 Identities=52% Similarity=0.880 Sum_probs=20.3
Q ss_pred ceeccCCcceeEEEEeCCCCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
+.+|+|.||+||+|.+.+-..||||
T Consensus 47 ~~iG~G~~g~V~~~~~~g~~~vavK 71 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKWRGTDVVAVK 71 (362)
T ss_pred hhcccCCceeEEEEEeCCceeEEEE
Confidence 3599999999999999443449987
No 18
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=95.95 E-value=0.0022 Score=37.76 Aligned_cols=29 Identities=34% Similarity=0.626 Sum_probs=25.1
Q ss_pred cCCcCceeccCCcceeEEEEeCCCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
.|.+ +-|+++..|.||+|.+.+|..||||
T Consensus 13 ~fd~-~PlasASiaQVh~a~l~~g~~VaVK 41 (119)
T PF03109_consen 13 EFDP-EPLASASIAQVHRARLKDGEEVAVK 41 (119)
T ss_pred HCCc-chhhheehhhheeeeecccchhhhh
Confidence 3553 5789999999999999999999998
No 19
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=95.80 E-value=0.012 Score=40.49 Aligned_cols=31 Identities=32% Similarity=0.613 Sum_probs=25.3
Q ss_pred ccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
..|...+.||+|++|.||+|.. ..+..+|+|
T Consensus 15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK 46 (342)
T cd07879 15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIK 46 (342)
T ss_pred cceEEEEEeeecCCeEEEEEEeCCCCcEEEEE
Confidence 4566667999999999999986 457888886
No 20
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=95.74 E-value=0.0051 Score=40.99 Aligned_cols=41 Identities=32% Similarity=0.520 Sum_probs=32.5
Q ss_pred cCHHHHHHhhccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 81 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+...++.+++++|...+.||+|+||.||++.. .++..+|+|
T Consensus 12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik 53 (291)
T cd06639 12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVK 53 (291)
T ss_pred hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEE
Confidence 44456666778888888999999999999987 457778876
No 21
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=95.66 E-value=0.0064 Score=44.63 Aligned_cols=28 Identities=50% Similarity=0.999 Sum_probs=23.5
Q ss_pred CCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
|.+ +++|+|.||+||-|.- ..|..||||
T Consensus 567 f~d-evLGSGQFG~VYgg~hRktGrdVAvK 595 (888)
T KOG4236|consen 567 FAD-EVLGSGQFGTVYGGKHRKTGRDVAVK 595 (888)
T ss_pred hhH-hhccCCcceeeecceecccCceeeee
Confidence 443 5899999999999977 568999997
No 22
>smart00090 RIO RIO-like kinase.
Probab=95.65 E-value=0.013 Score=38.60 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.5
Q ss_pred cCceeccCCcceeEEEE--eCCCCEEEeC
Q 037933 95 ECNLLGTGSFGSVYKGT--ISDGTDVAIK 121 (121)
Q Consensus 95 ~~~~ig~g~~g~vykg~--l~~g~~vavK 121 (121)
-...||+|++|.||+|. ..+|..||+|
T Consensus 32 i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK 60 (237)
T smart00090 32 IGGCISTGKEANVYHALDFDGSGKERAVK 60 (237)
T ss_pred hCCeeccCcceeEEEEEecCCCCcEEEEE
Confidence 34589999999999998 6789999987
No 23
>PTZ00036 glycogen synthase kinase; Provisional
Probab=95.54 E-value=0.011 Score=42.35 Aligned_cols=31 Identities=39% Similarity=0.701 Sum_probs=25.3
Q ss_pred ccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
..|...+.||+|+||.||+|.. ..+..||||
T Consensus 66 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK 97 (440)
T PTZ00036 66 KSYKLGNIIGNGSFGVVYEAICIDTSEKVAIK 97 (440)
T ss_pred CeEEEeEEEEeCCCEEEEEEEECCCCCEEEEE
Confidence 3466667899999999999987 457889987
No 24
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=95.44 E-value=0.0073 Score=40.08 Aligned_cols=40 Identities=23% Similarity=0.504 Sum_probs=30.3
Q ss_pred CHHHHHHhhccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 82 SYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 82 ~~~~l~~~~~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.++.+..++++|.-...||+|+||.||++.. ..+..+|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik 49 (286)
T cd06638 9 IFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVK 49 (286)
T ss_pred EeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEE
Confidence 3445556667777777999999999999987 446777776
No 25
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=95.39 E-value=0.012 Score=40.57 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=22.4
Q ss_pred cCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 95 ECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 95 ~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
..+.||+|+||.||++.. .++..||+|
T Consensus 78 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK 105 (353)
T PLN00034 78 RVNRIGSGAGGTVYKVIHRPTGRLYALK 105 (353)
T ss_pred hhhhccCCCCeEEEEEEECCCCCEEEEE
Confidence 345899999999999986 457889987
No 26
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=95.38 E-value=0.018 Score=38.16 Aligned_cols=31 Identities=39% Similarity=0.530 Sum_probs=24.6
Q ss_pred ccCCcCceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
++|.-...+|+|.||.||.|.-+ ++-.||+|
T Consensus 22 ~dfeigr~LgkgkFG~vYlarekks~~IvalK 53 (281)
T KOG0580|consen 22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALK 53 (281)
T ss_pred hhccccccccCCccccEeEeeeccCCcEEEEe
Confidence 35666778999999999999874 45677876
No 27
>PLN03150 hypothetical protein; Provisional
Probab=95.36 E-value=0.032 Score=41.84 Aligned_cols=17 Identities=41% Similarity=0.876 Sum_probs=12.1
Q ss_pred ccCCccccCCCCCCCCCCC
Q 037933 3 FFGNYALCGPPKLRVPPCK 21 (121)
Q Consensus 3 ~~gN~~lc~~~~~~~~~~~ 21 (121)
+.+|+.+|+.+ .++.|.
T Consensus 522 ~~~N~~lc~~p--~l~~C~ 538 (623)
T PLN03150 522 FTDNAGLCGIP--GLRACG 538 (623)
T ss_pred ecCCccccCCC--CCCCCc
Confidence 56899999754 455674
No 28
>PHA02882 putative serine/threonine kinase; Provisional
Probab=95.31 E-value=0.015 Score=39.07 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=18.5
Q ss_pred cCCcCceeccCCcceeEEEEeCC
Q 037933 92 EFNECNLLGTGSFGSVYKGTISD 114 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~~ 114 (121)
.|.-.++||+|+||.||+|...+
T Consensus 13 ~y~i~~~LG~G~fG~Vy~~~~~~ 35 (294)
T PHA02882 13 EWKIDKLIGCGGFGCVYETQCAS 35 (294)
T ss_pred ceEEeeEEecCCCceEEEEEEcC
Confidence 35555689999999999998744
No 29
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=95.30 E-value=0.0077 Score=43.50 Aligned_cols=30 Identities=37% Similarity=0.622 Sum_probs=22.2
Q ss_pred cCCcCceeccCCcceeEEEEeCCC----CE-EEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTISDG----TD-VAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~~g----~~-vavK 121 (121)
+......||+|.||.||+|.+..+ .. ||||
T Consensus 158 ~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK 192 (474)
T KOG0194|consen 158 DIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVK 192 (474)
T ss_pred CccccceeecccccEEEEEEEEecCCceeeeeEEE
Confidence 334446899999999999998443 23 7886
No 30
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.23 E-value=0.015 Score=42.25 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=24.8
Q ss_pred cCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.+.-.+.||+|+||+||++.. .++..+|||
T Consensus 33 rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK 63 (496)
T PTZ00283 33 KYWISRVLGSGATGTVLCAKRVSDGEPFAVK 63 (496)
T ss_pred CEEEEEEEecCCCEEEEEEEEcCCCCEEEEE
Confidence 455566899999999999975 568899987
No 31
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=95.20 E-value=0.019 Score=37.99 Aligned_cols=40 Identities=30% Similarity=0.568 Sum_probs=29.0
Q ss_pred CHHHHHHhhccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 82 SYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 82 ~~~~l~~~~~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
++.++..+.+.|.-...+|.|+||.||+|.. ..+..+|+|
T Consensus 7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K 47 (282)
T cd06636 7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIK 47 (282)
T ss_pred hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEE
Confidence 3344444555566667899999999999987 456778876
No 32
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=95.16 E-value=0.0088 Score=41.41 Aligned_cols=31 Identities=32% Similarity=0.592 Sum_probs=24.5
Q ss_pred ccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
++|..-|.|++|.||.||+|.- +.+..||.|
T Consensus 76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALK 107 (419)
T KOG0663|consen 76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALK 107 (419)
T ss_pred HHHHHHhhcccCcceeEEEeccCCcceeEEee
Confidence 3466677899999999999986 345778876
No 33
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=95.10 E-value=0.0078 Score=40.83 Aligned_cols=25 Identities=52% Similarity=0.820 Sum_probs=21.0
Q ss_pred ceeccCCcceeEEEE-eCCCCEEEeC
Q 037933 97 NLLGTGSFGSVYKGT-ISDGTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~-l~~g~~vavK 121 (121)
..||+|.||.|||+. +.+|..+|.|
T Consensus 25 ~~IG~GsFg~vykv~~~~~g~l~a~K 50 (375)
T KOG0591|consen 25 KKIGRGSFGEVYKVQCLLDGKLVALK 50 (375)
T ss_pred HHHcCCcchheEEeeeccCcchhhhh
Confidence 379999999999995 5788888765
No 34
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=95.08 E-value=0.018 Score=39.35 Aligned_cols=30 Identities=43% Similarity=0.575 Sum_probs=24.2
Q ss_pred cCCcCceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
+|...+.||+|+||.||++... .+..+|+|
T Consensus 19 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK 49 (329)
T PTZ00263 19 DFEMGETLGTGSFGRVRIAKHKGTGEYYAIK 49 (329)
T ss_pred heEEEEEEEecCCeEEEEEEECCCCCEEEEE
Confidence 3455568999999999999874 47788887
No 35
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=95.06 E-value=0.022 Score=39.19 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=29.7
Q ss_pred HHHHHhhccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 84 LDIQRATDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 84 ~~l~~~~~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.++....+.|.....||+|+||.||++.. .++..||+|
T Consensus 10 ~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK 48 (345)
T cd07877 10 KTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVK 48 (345)
T ss_pred HHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEE
Confidence 34455666777777899999999999975 567888886
No 36
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=95.05 E-value=0.018 Score=40.14 Aligned_cols=30 Identities=33% Similarity=0.527 Sum_probs=22.4
Q ss_pred cCCcCceeccCCcceeEEEEe------CCCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTI------SDGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l------~~g~~vavK 121 (121)
+|.-...||+|+||.||++.. +.+..||||
T Consensus 36 ~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK 71 (375)
T cd05104 36 RLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVK 71 (375)
T ss_pred HeehhheecCCccceEEEEEEeccccCccceeEEEE
Confidence 345556999999999999964 234578886
No 37
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=95.01 E-value=0.018 Score=39.54 Aligned_cols=25 Identities=44% Similarity=0.731 Sum_probs=21.3
Q ss_pred ceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+.||+|.||+||+|.. ..|..||+|
T Consensus 17 eklGeGtyg~Vykar~~~~g~~VALK 42 (323)
T KOG0594|consen 17 EKLGEGTYGVVYKARSKRTGKFVALK 42 (323)
T ss_pred HHhCCCCceEEEEEEEecCCCEEEEE
Confidence 3689999999999986 557889987
No 38
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=94.99 E-value=0.0084 Score=43.36 Aligned_cols=29 Identities=38% Similarity=0.787 Sum_probs=24.0
Q ss_pred CCcCceeccCCcceeEEEE-eCCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGT-ISDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~-l~~g~~vavK 121 (121)
|.....||+|.||.||||. +..|..||.|
T Consensus 119 feki~kIGeGTyg~VYkAr~~~tgkivALK 148 (560)
T KOG0600|consen 119 FEKIEKIGEGTYGQVYKARDLETGKIVALK 148 (560)
T ss_pred HHHHHHhcCcchhheeEeeecccCcEEEEE
Confidence 4555689999999999996 4678899987
No 39
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=94.97 E-value=0.012 Score=41.05 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=25.0
Q ss_pred ccCCcCceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
++|...+.||+|+||.||++... .+..+|+|
T Consensus 43 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK 74 (370)
T cd05596 43 EDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMK 74 (370)
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEE
Confidence 45666678999999999999874 47788886
No 40
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=94.95 E-value=0.023 Score=37.95 Aligned_cols=29 Identities=45% Similarity=0.897 Sum_probs=24.5
Q ss_pred CCcCceeccCCcceeEEEE-eCCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGT-ISDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~-l~~g~~vavK 121 (121)
......||+|+||.+|.|. +.+|..||||
T Consensus 17 y~lvrkiGsGSFGdIy~~~~i~~ge~VAiK 46 (341)
T KOG1163|consen 17 YKLVRKIGSGSFGDIYLGISITSGEEVAIK 46 (341)
T ss_pred eEEEEeecCCchhheeeeeeccCCceEEEE
Confidence 4455689999999999996 5889999997
No 41
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=94.92 E-value=0.019 Score=40.04 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=24.7
Q ss_pred ccCCcCceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
+++...+.||+|+||.||++... ++..+|+|
T Consensus 43 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK 74 (370)
T cd05621 43 EDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMK 74 (370)
T ss_pred HHCeEEEEEEecCCeEEEEEEECCCCCEEEEE
Confidence 45666678999999999999874 46778876
No 42
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=94.91 E-value=0.027 Score=41.47 Aligned_cols=29 Identities=31% Similarity=0.613 Sum_probs=25.4
Q ss_pred CCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+...++||+|+|+.+|.+.- ..|..+|+|
T Consensus 20 Y~~g~~LGkGgFA~cYe~~~~~tge~~A~K 49 (592)
T KOG0575|consen 20 YKRGRFLGKGGFARCYEARDLDTGEVVAVK 49 (592)
T ss_pred eeeeeeeccCcceEEEEEEEcCCCcEEEEE
Confidence 45567999999999999987 889999997
No 43
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=94.89 E-value=0.018 Score=40.12 Aligned_cols=37 Identities=22% Similarity=0.429 Sum_probs=28.0
Q ss_pred HHHHhhccCCcCceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 85 DIQRATDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 85 ~l~~~~~~~~~~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
++....++|.....||+|+||.||++... .+..+|+|
T Consensus 37 ~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK 74 (371)
T cd05622 37 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMK 74 (371)
T ss_pred hcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEE
Confidence 33344556777789999999999999874 46778876
No 44
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=94.86 E-value=0.038 Score=37.85 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=24.0
Q ss_pred cCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.|.....||+|+||.||++.. ..+..||||
T Consensus 16 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK 46 (343)
T cd07878 16 RYQNLTPVGSGAYGSVCSAYDTRLRQKVAVK 46 (343)
T ss_pred hhhhheecccCCCeEEEEEEECCCCCEEEEE
Confidence 355556899999999999986 456788887
No 45
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=0.049 Score=41.51 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=21.1
Q ss_pred CceeccCCcceeEEEEeCC------CCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTISD------GTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l~~------g~~vavK 121 (121)
...||+|.||.||+|+..+ .+.||||
T Consensus 491 ~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK 522 (774)
T KOG1026|consen 491 KEELGEGAFGKVFLAEAYGLLPGQDEQLVAVK 522 (774)
T ss_pred hhhhcCchhhhhhhhhccCCCCCccceehhHh
Confidence 4479999999999998743 3688887
No 46
>PHA02988 hypothetical protein; Provisional
Probab=94.73 E-value=0.051 Score=36.34 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=27.9
Q ss_pred ccccCHHHHHHhhccCCcCceeccCCcceeEEEEeCCCCEEEeC
Q 037933 78 WRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
.+.++.+++ +......|++|+++.||+|.+ +|..||||
T Consensus 12 ~~~i~~~~i-----~~~~~~~i~~g~~~~v~~~~~-~~~~vavK 49 (283)
T PHA02988 12 IKCIESDDI-----DKYTSVLIKENDQNSIYKGIF-NNKEVIIR 49 (283)
T ss_pred ceecCHHHc-----CCCCCeEEeeCCceEEEEEEE-CCEEEEEE
Confidence 334555555 233346899999999999999 78889987
No 47
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=94.62 E-value=0.012 Score=44.04 Aligned_cols=26 Identities=46% Similarity=0.777 Sum_probs=22.4
Q ss_pred CceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
...+|+|+||.||+|.- ..|..||||
T Consensus 18 ~e~LG~Ga~g~V~rgrnketG~~vAvK 44 (732)
T KOG4250|consen 18 DERLGKGAFGNVYRGRNKETGRLVAVK 44 (732)
T ss_pred hhhhcCCccceeeeecccccccchhHH
Confidence 34899999999999994 668999997
No 48
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=94.61 E-value=0.024 Score=44.34 Aligned_cols=29 Identities=48% Similarity=0.710 Sum_probs=25.4
Q ss_pred CCcCceeccCCcceeEEEEeCCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
|.-...||+|+||.||+|.-.+|..||+|
T Consensus 700 ~~I~~e~G~g~y~~vy~a~~~~~~~~alK 728 (974)
T KOG1166|consen 700 FCISKEIGEGSYGSVYVATHSNGKLVALK 728 (974)
T ss_pred EEEEeeeccccceEEEEeecCCCcEEEEE
Confidence 44466899999999999999889999997
No 49
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=94.61 E-value=0.022 Score=41.01 Aligned_cols=25 Identities=44% Similarity=0.760 Sum_probs=22.2
Q ss_pred ceeccCCcceeEEEEeCCCCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
+.||+|.||.||.|.+++...||||
T Consensus 212 ~~LG~G~FG~V~~g~~~~~~~vavk 236 (468)
T KOG0197|consen 212 RELGSGQFGEVWLGKWNGSTKVAVK 236 (468)
T ss_pred HHhcCCccceEEEEEEcCCCcccce
Confidence 4799999999999999777788887
No 50
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=94.57 E-value=0.067 Score=30.31 Aligned_cols=14 Identities=0% Similarity=0.002 Sum_probs=6.7
Q ss_pred EEEeeehHHHHHHH
Q 037933 33 LIVLKYVLPLIVST 46 (121)
Q Consensus 33 ~~~~~i~~~~~~~~ 46 (121)
..+..|.+++++++
T Consensus 66 gaiagi~vg~~~~v 79 (96)
T PTZ00382 66 GAIAGISVAVVAVV 79 (96)
T ss_pred ccEEEEEeehhhHH
Confidence 34555555544433
No 51
>PF15102 TMEM154: TMEM154 protein family
Probab=94.53 E-value=0.049 Score=33.10 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=6.0
Q ss_pred EeeehHHHHHH
Q 037933 35 VLKYVLPLIVS 45 (121)
Q Consensus 35 ~~~i~~~~~~~ 45 (121)
+++++|+.+++
T Consensus 58 iLmIlIP~VLL 68 (146)
T PF15102_consen 58 ILMILIPLVLL 68 (146)
T ss_pred EEEEeHHHHHH
Confidence 56666664333
No 52
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=94.40 E-value=0.031 Score=30.20 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=13.5
Q ss_pred cccCHHHHHHhhccCCc
Q 037933 79 RRTSYLDIQRATDEFNE 95 (121)
Q Consensus 79 ~~~~~~~l~~~~~~~~~ 95 (121)
++.+|+|...|..+|..
T Consensus 55 DP~TYEDP~qAV~eFAk 71 (75)
T PF14575_consen 55 DPHTYEDPNQAVREFAK 71 (75)
T ss_dssp -GGGSSSHHHHHHHCSS
T ss_pred CcccccCHHHHHHHHHh
Confidence 46789999999988875
No 53
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=94.31 E-value=0.015 Score=46.09 Aligned_cols=35 Identities=49% Similarity=0.706 Sum_probs=27.9
Q ss_pred HHhhccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 87 QRATDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 87 ~~~~~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.+..++|.+-.++|+|+||.|||+.- =||+..|||
T Consensus 475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIK 510 (1351)
T KOG1035|consen 475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIK 510 (1351)
T ss_pred hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhh
Confidence 34556788788999999999999963 278888887
No 54
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=94.30 E-value=0.053 Score=40.01 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=25.4
Q ss_pred cCCcCceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
+|.. +-+++|++|.||+|.+.+ |..||||
T Consensus 121 ~fd~-~PlasaSiaQVh~A~l~~~G~~VAVK 150 (537)
T PRK04750 121 DFDI-KPLASASIAQVHFARLKDNGREVVVK 150 (537)
T ss_pred hcCh-hhhcCCCccEEEEEEECCCCCEEEEE
Confidence 3555 579999999999999987 9999998
No 55
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=94.21 E-value=0.048 Score=37.49 Aligned_cols=31 Identities=32% Similarity=0.652 Sum_probs=25.0
Q ss_pred ccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
..|...+.||+|++|.||++.. .++..||||
T Consensus 15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK 46 (343)
T cd07880 15 DRYRDLKQVGSGAYGTVCSALDRRTGAKVAIK 46 (343)
T ss_pred cceEEEEEeeecCCeEEEEEEECCCCcEEEEE
Confidence 3455667899999999999985 467888887
No 56
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=94.20 E-value=0.05 Score=36.40 Aligned_cols=29 Identities=31% Similarity=0.586 Sum_probs=24.0
Q ss_pred CCcCceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
+...+.||+|.+|.||++...+ +..+|||
T Consensus 17 ~~~~~~lg~g~~~~v~~~~~~~~~~~~avK 46 (296)
T cd06618 17 LENLGEIGSGTCGQVYKMRFKKTGHVMAVK 46 (296)
T ss_pred heeeeEeeccCCeEEEEEEECCCCeEEEEE
Confidence 4445689999999999999865 7888886
No 57
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=94.03 E-value=0.046 Score=38.20 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=22.5
Q ss_pred cCCcCceeccCCcceeEEEEe------CCCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTI------SDGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l------~~g~~vavK 121 (121)
+|.-.+.||+|+||.||++.. .++..||+|
T Consensus 39 ~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK 74 (374)
T cd05106 39 NLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVK 74 (374)
T ss_pred HceehheecCCCcccEEEEEEecCCcccccceeEEE
Confidence 455567899999999999874 223578886
No 58
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=94.02 E-value=0.041 Score=37.91 Aligned_cols=29 Identities=52% Similarity=0.654 Sum_probs=22.6
Q ss_pred CCcCceeccCCcceeEEEEeCCC--CEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTISDG--TDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~~g--~~vavK 121 (121)
|.....||+|+||.||+|...+. ..+|+|
T Consensus 32 y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK 62 (340)
T PTZ00426 32 FNFIRTLGTGSFGRVILATYKNEDFPPVAIK 62 (340)
T ss_pred cEEEEEEeecCCeEEEEEEEECCCCeEEEEE
Confidence 55556899999999999986443 578876
No 59
>PHA03209 serine/threonine kinase US3; Provisional
Probab=94.01 E-value=0.063 Score=37.18 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=25.6
Q ss_pred hccCCcCceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 90 TDEFNECNLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 90 ~~~~~~~~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
..+|.....||+|+||.||+|.... +..||+|
T Consensus 65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK 97 (357)
T PHA03209 65 SLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLK 97 (357)
T ss_pred hcCcEEEEEecCCCCeEEEEEEECCCCceEEEE
Confidence 3457777899999999999998743 5678876
No 60
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=93.87 E-value=0.039 Score=32.66 Aligned_cols=17 Identities=6% Similarity=0.413 Sum_probs=7.3
Q ss_pred EeeehHHHHHHHHHHHH
Q 037933 35 VLKYVLPLIVSTVLIVI 51 (121)
Q Consensus 35 ~~~i~~~~~~~~~~~~~ 51 (121)
++.|++++++.++.+++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 34444444444443333
No 61
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=93.84 E-value=0.035 Score=33.92 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=10.3
Q ss_pred EEEeeehHHHHHHHHHHHHHH
Q 037933 33 LIVLKYVLPLIVSTVLIVITI 53 (121)
Q Consensus 33 ~~~~~i~~~~~~~~~~~~~~~ 53 (121)
..++.+++++.++++++++++
T Consensus 49 nIVIGvVVGVGg~ill~il~l 69 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILAL 69 (154)
T ss_pred cEEEEEEecccHHHHHHHHHh
Confidence 345555555555544444444
No 62
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=93.74 E-value=0.058 Score=37.26 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=24.8
Q ss_pred ccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+.+.....||+|+||.||++.- ..|..+|+|
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK 52 (359)
T cd07876 21 KRYQQLKPIGSGAQGIVCAAFDTVLGINVAVK 52 (359)
T ss_pred hceEEEEEeecCCCEEEEEEEEcCCCceeEEE
Confidence 4466667899999999999976 447788887
No 63
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=93.66 E-value=0.074 Score=35.81 Aligned_cols=29 Identities=41% Similarity=0.605 Sum_probs=23.6
Q ss_pred CCcCceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
|...+.||+|.+|.||+|... ++..+|+|
T Consensus 17 y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK 46 (307)
T cd06607 17 FTDLREIGHGSFGAVYFARDVRTNEVVAIK 46 (307)
T ss_pred hhhheeecCCCCeEEEEEEEcCCCcEEEEE
Confidence 555668999999999999874 57788876
No 64
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=93.64 E-value=0.078 Score=38.74 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=26.2
Q ss_pred hhccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 89 ATDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 89 ~~~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
..++|..-.+||+|+||.||-+.= +.|...|.|
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK 172 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMK 172 (550)
T ss_pred CcccchhheeeccccceeEEEEEEccCCcEEeee
Confidence 345677778999999999998876 447788876
No 65
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=93.62 E-value=0.071 Score=37.75 Aligned_cols=30 Identities=37% Similarity=0.551 Sum_probs=21.7
Q ss_pred cCCcCceeccCCcceeEEEEeCC------CCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTISD------GTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~~------g~~vavK 121 (121)
.+.-.+.||+|+||.||+|.... +..||||
T Consensus 38 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK 73 (400)
T cd05105 38 GLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVK 73 (400)
T ss_pred ceehhheecCCCCceEEEEEEcccCCCCCceEEEEE
Confidence 34445689999999999998521 2368886
No 66
>PHA03212 serine/threonine kinase US3; Provisional
Probab=93.52 E-value=0.087 Score=37.14 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=24.6
Q ss_pred cCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.|.....||+|+||.||++.- ..+..||+|
T Consensus 93 ~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK 123 (391)
T PHA03212 93 GFSILETFTPGAEGFAFACIDNKTCEHVVIK 123 (391)
T ss_pred CcEEEEEEcCCCCeEEEEEEECCCCCEEEEe
Confidence 466667899999999999976 456788887
No 67
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.50 E-value=0.067 Score=40.12 Aligned_cols=32 Identities=38% Similarity=0.565 Sum_probs=25.7
Q ss_pred hccCCcCceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 90 TDEFNECNLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 90 ~~~~~~~~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
..+|....++|+|.||.|+.+.+.+ +...|||
T Consensus 367 l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK 399 (694)
T KOG0694|consen 367 LDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIK 399 (694)
T ss_pred ccceEEEEEeccCcCceEEEEEEcCCCcEEEEE
Confidence 3457777799999999999999944 5677886
No 68
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=93.43 E-value=0.072 Score=36.12 Aligned_cols=29 Identities=41% Similarity=0.614 Sum_probs=23.5
Q ss_pred CCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
|...+.||+|+||.||++.. .++..+|+|
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK 56 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIK 56 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCcEEEEE
Confidence 55566899999999999986 456788876
No 69
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=93.32 E-value=0.064 Score=42.25 Aligned_cols=28 Identities=54% Similarity=0.918 Sum_probs=21.1
Q ss_pred CcCceeccCCcceeEEEEeCC--C----CEEEeC
Q 037933 94 NECNLLGTGSFGSVYKGTISD--G----TDVAIK 121 (121)
Q Consensus 94 ~~~~~ig~g~~g~vykg~l~~--g----~~vavK 121 (121)
.....||+|.||.||+|.+.+ | ..||||
T Consensus 695 ~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK 728 (1025)
T KOG1095|consen 695 TLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVK 728 (1025)
T ss_pred EeeeeeccccccceEEEEEecCCCCccceEEEEE
Confidence 335589999999999999844 2 237776
No 70
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.29 E-value=0.036 Score=41.45 Aligned_cols=29 Identities=41% Similarity=0.644 Sum_probs=22.8
Q ss_pred CCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
|.+-..||.|.||.||-+.- .+..+||||
T Consensus 28 f~dLrEIGHGSFGAVYfArd~~n~evVAIK 57 (948)
T KOG0577|consen 28 FSDLREIGHGSFGAVYFARDVRNSEVVAIK 57 (948)
T ss_pred HHHHHHhcCCccceeEEeeccCccceeeee
Confidence 34444799999999999875 456789987
No 71
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=93.27 E-value=0.067 Score=37.93 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=22.0
Q ss_pred CCcCceeccCCcceeEEEEeCC------CCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTISD------GTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~~------g~~vavK 121 (121)
+.....||+|+||.||++...+ +..||+|
T Consensus 39 ~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK 73 (401)
T cd05107 39 LVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVK 73 (401)
T ss_pred eehhhhccCCCceeEEEEEEcCCCCCCCceEEEEE
Confidence 4445689999999999998632 3578886
No 72
>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl
Probab=93.15 E-value=0.085 Score=35.29 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=24.3
Q ss_pred cCCcCceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
.|.....||+|++|.||++... ++..+|||
T Consensus 13 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik 43 (310)
T cd07865 13 KYEKLAKIGQGTFGEVFKARHKKTKQIVALK 43 (310)
T ss_pred heEEEEEeecCCCEEEEEEEECCCCcEEEEE
Confidence 4566678999999999999873 57788886
No 73
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=93.11 E-value=0.1 Score=35.05 Aligned_cols=29 Identities=34% Similarity=0.658 Sum_probs=23.9
Q ss_pred CCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
|...+.||+|++|.||++.. .++..+|+|
T Consensus 21 y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK 50 (297)
T cd06656 21 YTRFEKIGQGASGTVYTAIDIATGQEVAIK 50 (297)
T ss_pred ceeeeeeccCCCeEEEEEEECCCCCEEEEE
Confidence 45556899999999999985 568888886
No 74
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=93.04 E-value=0.096 Score=36.25 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=24.3
Q ss_pred ccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+.|.....||+|+||.||++.- ..+..+|||
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK 55 (364)
T cd07875 24 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIK 55 (364)
T ss_pred cceeEEEEeecCCCeEEEEEEECCCCcEEEEE
Confidence 3466667899999999999985 346778886
No 75
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=93.00 E-value=0.09 Score=36.20 Aligned_cols=29 Identities=48% Similarity=0.761 Sum_probs=23.4
Q ss_pred CCcCceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
+...+.||+|.||.||.+...+ |...|||
T Consensus 19 ~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK 48 (313)
T KOG0198|consen 19 WSKGKLLGRGSFGSVYLATNKKTGELMAVK 48 (313)
T ss_pred hhhhccccCccceEEEEEEecCCCcceeee
Confidence 3444589999999999999844 7888887
No 76
>PHA03211 serine/threonine kinase US3; Provisional
Probab=92.98 E-value=0.1 Score=37.72 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=23.5
Q ss_pred CCcCceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
|.-...||+|+||.||++...+ +..||||
T Consensus 171 y~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK 200 (461)
T PHA03211 171 FAIHRALTPGSEGCVFESSHPDYPQRVVVK 200 (461)
T ss_pred eEEEEEEccCCCeEEEEEEECCCCCEEEEe
Confidence 4555689999999999998854 6788887
No 77
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=92.97 E-value=0.095 Score=36.11 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=24.2
Q ss_pred ccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+.|.....||+|+||.||++.- ..+..+|||
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK 48 (355)
T cd07874 17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIK 48 (355)
T ss_pred hceeEEEEeeecCCEEEEEEEecCCCceEEEE
Confidence 3466667899999999999975 346778876
No 78
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=92.93 E-value=0.26 Score=36.29 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=19.5
Q ss_pred CCcCceeccCCcceeEEEEeCCCC
Q 037933 93 FNECNLLGTGSFGSVYKGTISDGT 116 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~~g~ 116 (121)
+...+.||+|+||+||+|.+.+..
T Consensus 335 ~~~~~~iG~G~~g~Vy~~~~~~~~ 358 (535)
T PRK09605 335 KIPDHLIGKGAEADIKKGEYLGRD 358 (535)
T ss_pred cCccceeccCCcEEEEEEeecCcc
Confidence 455679999999999999885543
No 79
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=92.73 E-value=0.058 Score=41.53 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=22.4
Q ss_pred cCHHHHHHhhccCCcCceeccCCcceeEEEEe
Q 037933 81 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTI 112 (121)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~ig~g~~g~vykg~l 112 (121)
+..+|.+...+ ......+|+|+||+||-|.-
T Consensus 985 yv~deWe~~r~-it~~relg~gsfg~Vy~g~~ 1015 (1025)
T KOG4258|consen 985 YVPDEWEVSRE-ITLGRELGQGSFGMVYEGNA 1015 (1025)
T ss_pred CChhHHHHHHH-HhhhhhhccCccceEEEecC
Confidence 45556555444 55556899999999999875
No 80
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=92.54 E-value=0.074 Score=35.41 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=22.4
Q ss_pred cCCcCceeccCCcceeEEEEeCC------CCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTISD------GTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~~------g~~vavK 121 (121)
+|...+.||+|++|.||++...+ ...+|+|
T Consensus 13 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k 48 (293)
T cd05053 13 RLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVK 48 (293)
T ss_pred HeEEeeEecccccccEEEEEEecCCCCCCceeEEEE
Confidence 45556789999999999998632 2466765
No 81
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=92.13 E-value=0.13 Score=35.33 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=24.6
Q ss_pred ccCCcCceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
++|.....||+|++|.||+|... ++..+|+|
T Consensus 15 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK 46 (343)
T cd07851 15 DRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIK 46 (343)
T ss_pred CceEEEEEeccCCceEEEEEEECCCCcEEEEE
Confidence 34555668999999999999884 46788886
No 82
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=91.98 E-value=0.059 Score=41.36 Aligned_cols=28 Identities=43% Similarity=0.854 Sum_probs=23.8
Q ss_pred CCcCceeccCCcce-eEEEEeCCCCEEEeC
Q 037933 93 FNECNLLGTGSFGS-VYKGTISDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~-vykg~l~~g~~vavK 121 (121)
|+.++++|.|.-|+ ||+|.+ +|+.||||
T Consensus 511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVK 539 (903)
T KOG1027|consen 511 FSPKEILGYGSNGTVVFRGVY-EGREVAVK 539 (903)
T ss_pred eccHHHcccCCCCcEEEEEee-CCceehHH
Confidence 56677889998877 899999 78899997
No 83
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=91.98 E-value=0.17 Score=34.86 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=25.3
Q ss_pred ccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+.|.....||+|+||.||++.. ..+..+|+|
T Consensus 16 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK 47 (353)
T cd07850 16 KRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIK 47 (353)
T ss_pred cceEEEEEeccCCCEEEEEEEECCCCCEEEEE
Confidence 4566667899999999999986 457888886
No 84
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=91.83 E-value=0.2 Score=33.95 Aligned_cols=28 Identities=39% Similarity=0.523 Sum_probs=21.6
Q ss_pred CcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 94 NECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 94 ~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
...+.||+|++|.||+|.. ..+..+++|
T Consensus 24 ~~~~~lg~g~~g~v~~~~~~~~~~~v~ik 52 (313)
T cd06633 24 VGLHEIGHGSFGAVYFATNSHTNEVVAVK 52 (313)
T ss_pred hcceeeccCCCeEEEEEEECCCCcEEEEE
Confidence 3345799999999999986 346777775
No 85
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=91.46 E-value=0.19 Score=33.76 Aligned_cols=24 Identities=46% Similarity=0.598 Sum_probs=20.6
Q ss_pred eeccCCcceeEEEEe-CCCCEEEeC
Q 037933 98 LLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 98 ~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.||+|+||.||++.. .++..+|+|
T Consensus 27 ~lg~g~~g~v~~~~~~~~~~~v~iK 51 (292)
T cd06657 27 KIGEGSTGIVCIATVKSSGKLVAVK 51 (292)
T ss_pred HcCCCCCeEEEEEEEcCCCeEEEEE
Confidence 689999999999987 457788876
No 86
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=91.19 E-value=0.27 Score=32.96 Aligned_cols=29 Identities=34% Similarity=0.658 Sum_probs=22.6
Q ss_pred CCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
|.-...||+|+||.||++.. .++..+|+|
T Consensus 21 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK 50 (293)
T cd06647 21 YTRFEKIGQGASGTVYTAIDVATGQEVAIK 50 (293)
T ss_pred ceeeeEecCCCCeEEEEEEEcCCCCEEEEE
Confidence 44455899999999999975 456778876
No 87
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=91.06 E-value=0.17 Score=33.56 Aligned_cols=32 Identities=38% Similarity=0.632 Sum_probs=24.5
Q ss_pred hccCCcCceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 90 TDEFNECNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 90 ~~~~~~~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
+..|...+.+|+|++|.||++..+ ++..+++|
T Consensus 18 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK 50 (286)
T cd06614 18 RELYKNLEKIGEGASGEVYKATDRATGKEVAIK 50 (286)
T ss_pred cccchHhHhccCCCCeEEEEEEEccCCcEEEEE
Confidence 334555568999999999999985 46777776
No 88
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=90.98 E-value=0.045 Score=37.04 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=21.1
Q ss_pred ceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
..||+|.||+|+|=.. +.|...|||
T Consensus 70 g~iG~G~fG~V~KM~hk~sg~~mAVK 95 (361)
T KOG1006|consen 70 GEIGNGAFGTVNKMLHKPSGKLMAVK 95 (361)
T ss_pred HHhcCCcchhhhhhhcCccCcEEEEE
Confidence 3799999999999766 567888987
No 89
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=90.87 E-value=0.18 Score=38.18 Aligned_cols=28 Identities=50% Similarity=0.877 Sum_probs=20.6
Q ss_pred CcCceeccCCcceeEEEEeCC---C--CEEEeC
Q 037933 94 NECNLLGTGSFGSVYKGTISD---G--TDVAIK 121 (121)
Q Consensus 94 ~~~~~ig~g~~g~vykg~l~~---g--~~vavK 121 (121)
....+||.|.||.||+|+.-+ | .-||||
T Consensus 392 tl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvK 424 (974)
T KOG4257|consen 392 TLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVK 424 (974)
T ss_pred cHHHhhcCCcccceeeeEecccccCcceeeeee
Confidence 334589999999999998722 3 346766
No 90
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=90.79 E-value=0.15 Score=37.57 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=25.2
Q ss_pred cCCcCceeccCCcceeEEEEeCCCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
+|++ +-|+.++-|.||+|++.+|..||||
T Consensus 127 eF~~-~PiAsASIaQVH~A~L~sG~~VAVK 155 (517)
T COG0661 127 EFEP-EPIASASIAQVHRAVLKSGEEVAVK 155 (517)
T ss_pred HcCC-CchhhhhHhhheeEEecCCCEEEEE
Confidence 3554 4788999999999999999999998
No 91
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=90.78 E-value=0.29 Score=32.64 Aligned_cols=25 Identities=44% Similarity=0.703 Sum_probs=20.2
Q ss_pred ceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
..||+|+||.||+|.... +..+++|
T Consensus 18 ~~lg~g~~g~vy~~~~~~~~~~~~~k 43 (292)
T cd06644 18 GELGDGAFGKVYKAKNKETGALAAAK 43 (292)
T ss_pred heecCCCCeEEEEEEECCCCceEEEE
Confidence 379999999999998744 6777765
No 92
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=90.70 E-value=0.19 Score=33.83 Aligned_cols=31 Identities=32% Similarity=0.478 Sum_probs=22.9
Q ss_pred ccCCcCceeccCCcceeEEEEeC------CCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTIS------DGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l~------~g~~vavK 121 (121)
++|...+.||+|+||.||++... .+..+|||
T Consensus 35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK 71 (302)
T cd05055 35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVK 71 (302)
T ss_pred HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEE
Confidence 34777789999999999999741 23467775
No 93
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=90.61 E-value=0.24 Score=35.11 Aligned_cols=25 Identities=44% Similarity=0.659 Sum_probs=21.8
Q ss_pred ceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
..||+|.||.||++.-.. |..+|+|
T Consensus 41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K 66 (382)
T KOG0032|consen 41 RELGRGQFGVVYLCREKSTGKEVACK 66 (382)
T ss_pred hhhCCCCceEEEEEEecCCCceeEEE
Confidence 489999999999998755 8888887
No 94
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=90.53 E-value=0.14 Score=39.19 Aligned_cols=25 Identities=56% Similarity=0.931 Sum_probs=20.3
Q ss_pred ceeccCCcceeEEEEe--CCC--CEEEeC
Q 037933 97 NLLGTGSFGSVYKGTI--SDG--TDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l--~~g--~~vavK 121 (121)
++||+|.||.|++|.| ++| ..||||
T Consensus 116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVK 144 (1039)
T KOG0199|consen 116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVK 144 (1039)
T ss_pred HHhcCcceeeEeeccccCCCCcEEeEEEE
Confidence 4789999999999998 334 367887
No 95
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=90.44 E-value=0.22 Score=34.73 Aligned_cols=30 Identities=33% Similarity=0.616 Sum_probs=23.1
Q ss_pred cCCcCceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
+|...++||+|+||.||...-. .+...|.|
T Consensus 26 dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmK 56 (357)
T KOG0598|consen 26 DFEILKVIGKGSFGKVFQVRKKDTGKIYAMK 56 (357)
T ss_pred heeeeeeeeccCCceEEEEEEcccCceeehh
Confidence 4777779999999999988653 35666665
No 96
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=90.35 E-value=0.16 Score=38.53 Aligned_cols=30 Identities=33% Similarity=0.619 Sum_probs=24.1
Q ss_pred cCCcCceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
+..-.+.+|-|.||.||.|+|+. ...||||
T Consensus 268 dItMkhKLGGGQYGeVYeGvWKkyslTvAVK 298 (1157)
T KOG4278|consen 268 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVK 298 (1157)
T ss_pred heeeeeccCCCcccceeeeeeeccceeeehh
Confidence 34456789999999999999944 5788887
No 97
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=90.17 E-value=0.32 Score=32.67 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=20.4
Q ss_pred eeccCCcceeEEEEe-CCCCEEEeC
Q 037933 98 LLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 98 ~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.||+|+||.||++.. .++..+|+|
T Consensus 28 ~ig~g~~g~v~~~~~~~~~~~v~iK 52 (297)
T cd06659 28 KIGEGSTGIVCIAREKHSGRQVAVK 52 (297)
T ss_pred hcCCCCceeEEEEEEcCCCCEEEEE
Confidence 689999999999986 357888886
No 98
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=90.11 E-value=0.35 Score=32.47 Aligned_cols=29 Identities=31% Similarity=0.652 Sum_probs=22.5
Q ss_pred CCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+.....||+|++|.||+|.. .++..+|+|
T Consensus 22 y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik 51 (296)
T cd06654 22 YTRFEKIGQGASGTVYTAMDVATGQEVAIR 51 (296)
T ss_pred eeeEEEecCCCCeEEEEEEECCCCcEEEEE
Confidence 34445799999999999985 456788876
No 99
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=89.93 E-value=0.34 Score=36.10 Aligned_cols=26 Identities=50% Similarity=0.649 Sum_probs=21.8
Q ss_pred CceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.++||+|.||.|-|+.- ..++.||||
T Consensus 191 ~e~LGkGtFGQVvk~~d~~T~e~VAIK 217 (586)
T KOG0667|consen 191 LEVLGKGSFGQVVKAYDHKTGEIVAIK 217 (586)
T ss_pred EEEecccccceeEEEEecCCCcEEEEE
Confidence 34899999999999975 447899997
No 100
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=89.89 E-value=0.3 Score=32.76 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=21.0
Q ss_pred CCcCceeccCCcceeEEEEeC--------CCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTIS--------DGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~--------~g~~vavK 121 (121)
+.....||+|+||.||++... ++..+|+|
T Consensus 17 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK 53 (304)
T cd05101 17 LTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVK 53 (304)
T ss_pred eeecceeeccCCceEEEEEEeccCCCCCCcceeEEee
Confidence 445568999999999999741 23467776
No 101
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=89.80 E-value=0.23 Score=33.55 Aligned_cols=29 Identities=41% Similarity=0.635 Sum_probs=22.1
Q ss_pred CCcCceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
|...+.||+|++|.||+|... ++..+|+|
T Consensus 17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik 46 (308)
T cd06634 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIK 46 (308)
T ss_pred HHHHHheeeCCCEEEEEEEEcCCCcEEEEE
Confidence 344457999999999999873 46677775
No 102
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=89.72 E-value=0.43 Score=31.82 Aligned_cols=29 Identities=38% Similarity=0.487 Sum_probs=22.7
Q ss_pred CCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+...+.||+|++|.||++.. .++..+++|
T Consensus 21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK 50 (285)
T cd06648 21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVK 50 (285)
T ss_pred hhcceEeccCCCeEEEEEEECCCCCEEEEE
Confidence 33445899999999999986 456778876
No 103
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=89.69 E-value=0.64 Score=30.67 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=18.1
Q ss_pred eccCCcceeEEEEe-CCCCEEEeC
Q 037933 99 LGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 99 ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+|+|.||.||++.. .++..+|+|
T Consensus 24 lg~g~~g~v~~~~~~~~~~~~~~k 47 (267)
T PHA03390 24 LIDGKFGKVSVLKHKPTQKLFVQK 47 (267)
T ss_pred ecCCCceEEEEEEEcCCCcEEEEE
Confidence 49999999999986 345666665
No 104
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=89.49 E-value=0.32 Score=32.65 Aligned_cols=29 Identities=31% Similarity=0.630 Sum_probs=23.0
Q ss_pred CCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
|.....||.|++|.||++.- .++..+++|
T Consensus 21 y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK 50 (296)
T cd06655 21 YTRYEKIGQGASGTVFTAIDVATGQEVAIK 50 (296)
T ss_pred EEEEEEEecCCCeEEEEEEEcCCCcEEEEE
Confidence 44455899999999999975 567788876
No 105
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=89.10 E-value=0.43 Score=32.13 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=16.4
Q ss_pred CCcCceeccCCcceeEEEEe
Q 037933 93 FNECNLLGTGSFGSVYKGTI 112 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l 112 (121)
+.-.+.||+|+||.||++..
T Consensus 20 ~~i~~~lg~G~~g~V~~~~~ 39 (307)
T cd05098 20 LVLGKPLGEGCFGQVVMAEA 39 (307)
T ss_pred eEEeeeeccCCCeeEEEeEE
Confidence 44456899999999999875
No 106
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=88.89 E-value=0.49 Score=31.72 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=20.2
Q ss_pred eeccCCcceeEEEEe-CCCCEEEeC
Q 037933 98 LLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 98 ~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.||+|+||.||++.. ..+..+|+|
T Consensus 29 ~lg~g~~g~v~~~~~~~~~~~vaiK 53 (292)
T cd06658 29 KIGEGSTGIVCIATEKHTGKQVAVK 53 (292)
T ss_pred cccCCCCeEEEEEEECCCCCEEEEE
Confidence 689999999999986 356788886
No 107
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=88.80 E-value=0.39 Score=30.55 Aligned_cols=25 Identities=16% Similarity=0.402 Sum_probs=14.2
Q ss_pred EEeeehHHHHHHHHHHHHHHHhhhh
Q 037933 34 IVLKYVLPLIVSTVLIVITIIMYIR 58 (121)
Q Consensus 34 ~~~~i~~~~~~~~~~~~~~~~~~~~ 58 (121)
..++|+++++++++++++.+++++.
T Consensus 158 ~~laI~lPvvv~~~~~~~~~~~~~~ 182 (189)
T PF14610_consen 158 YALAIALPVVVVVLALIMYGFFFWN 182 (189)
T ss_pred eeEEEEccHHHHHHHHHHHhhheee
Confidence 3566777766666555554444443
No 108
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=88.77 E-value=0.4 Score=33.59 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=20.7
Q ss_pred CceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
.+.||+|..|+|||+... .+...|.|
T Consensus 84 ~~~lG~G~gG~V~kv~Hk~t~~i~AlK 110 (364)
T KOG0581|consen 84 LGVLGSGNGGTVYKVRHKPTGKIYALK 110 (364)
T ss_pred hhhcccCCCcEEEEEEEcCCCeEEEEE
Confidence 348999999999999874 45667766
No 109
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=88.73 E-value=0.064 Score=36.97 Aligned_cols=25 Identities=48% Similarity=0.655 Sum_probs=21.4
Q ss_pred ceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
..+|.|.||.|||+.- ..|..+|+|
T Consensus 39 ~KLGEGSYGSV~KAIH~EsG~v~AIK 64 (502)
T KOG0574|consen 39 GKLGEGSYGSVHKAIHRESGHVLAIK 64 (502)
T ss_pred HHhcCCcchHHHHHHHhccCcEEEEE
Confidence 3689999999999976 568899987
No 110
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=88.50 E-value=0.065 Score=38.84 Aligned_cols=26 Identities=42% Similarity=0.640 Sum_probs=20.6
Q ss_pred CceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
-+++|+|+|..|||+.- .....||||
T Consensus 468 LhLLGrGGFSEVyKAFDl~EqRYvAvK 494 (775)
T KOG1151|consen 468 LHLLGRGGFSEVYKAFDLTEQRYVAVK 494 (775)
T ss_pred HHHhccccHHHHHHhcccchhheeeEe
Confidence 35789999999999963 445678876
No 111
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=88.42 E-value=0.78 Score=21.26 Aligned_cols=18 Identities=17% Similarity=0.575 Sum_probs=7.4
Q ss_pred eeehHHHHHHHHHHHHHH
Q 037933 36 LKYVLPLIVSTVLIVITI 53 (121)
Q Consensus 36 ~~i~~~~~~~~~~~~~~~ 53 (121)
+.+++++++.++++++.+
T Consensus 6 IaIIv~V~vg~~iiii~~ 23 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICM 23 (38)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344444444444333333
No 112
>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=88.21 E-value=0.49 Score=32.47 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=21.9
Q ss_pred cCCcCceeccCCcceeEEEEeCCC--CEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTISDG--TDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~~g--~~vavK 121 (121)
.+.-...||+|+||.||.+.-... ..+|+|
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K 50 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKK 50 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCCCeeEEEE
Confidence 455566899999999999986443 356654
No 113
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=88.13 E-value=0.34 Score=32.76 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=17.1
Q ss_pred cCCcCceeccCCcceeEEEEe
Q 037933 92 EFNECNLLGTGSFGSVYKGTI 112 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l 112 (121)
.|...+.||+|+||.||++..
T Consensus 13 ~~~~~~~lg~G~~g~vy~~~~ 33 (314)
T cd05099 13 RLVLGKPLGEGCFGQVVRAEA 33 (314)
T ss_pred HeeeeeeecCCCcccEEEeee
Confidence 355567899999999999864
No 114
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.09 E-value=0.56 Score=33.11 Aligned_cols=29 Identities=41% Similarity=0.579 Sum_probs=23.1
Q ss_pred CCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+.....||+|.||.||.|.. ..+..||+|
T Consensus 19 y~~~~~lG~GsfgkV~~a~~~~t~~~vAiK 48 (370)
T KOG0583|consen 19 YELGRTLGSGSFGKVKLAKHRLTGEKVAIK 48 (370)
T ss_pred eeeeeeecCCCCeeEEEeeeccCCCeEEEE
Confidence 34445899999999999965 567889987
No 115
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=87.64 E-value=0.51 Score=32.98 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=23.0
Q ss_pred CcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 94 NECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 94 ~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.....||+|.||.|.++.- ..|..||||
T Consensus 25 ~~~~~iG~GAyGvVcsA~~~~t~~~VAIK 53 (359)
T KOG0660|consen 25 VLIEPIGRGAYGVVCSAKDKRTGEKVAIK 53 (359)
T ss_pred cccccccCcceeeEEEEEEcCCCCEeehh
Confidence 3345799999999999986 557899997
No 116
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=87.20 E-value=0.35 Score=38.48 Aligned_cols=31 Identities=23% Similarity=0.376 Sum_probs=22.9
Q ss_pred ccCCcCceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
..|.-...||+|+||+||++.... +..+|+|
T Consensus 13 ~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlK 44 (1021)
T PTZ00266 13 NEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWK 44 (1021)
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCeEEEEE
Confidence 345556689999999999998743 5566665
No 117
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=87.13 E-value=0.19 Score=35.65 Aligned_cols=33 Identities=39% Similarity=0.592 Sum_probs=25.7
Q ss_pred hhccCCcCceeccCCcceeEEEEeCC----CCEEEeC
Q 037933 89 ATDEFNECNLLGTGSFGSVYKGTISD----GTDVAIK 121 (121)
Q Consensus 89 ~~~~~~~~~~ig~g~~g~vykg~l~~----g~~vavK 121 (121)
..+.+...+.||.|.|+.||++.+.. ...||+|
T Consensus 34 ~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk 70 (418)
T KOG1167|consen 34 ISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALK 70 (418)
T ss_pred hhhhhhhhccccccchhhhhhhhHhhhccccceEeee
Confidence 34457788899999999999998743 4567765
No 118
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=86.72 E-value=1.3 Score=33.40 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=9.6
Q ss_pred EEEeeehHHHHHHHHHHHHHHHhhhh
Q 037933 33 LIVLKYVLPLIVSTVLIVITIIMYIR 58 (121)
Q Consensus 33 ~~~~~i~~~~~~~~~~~~~~~~~~~~ 58 (121)
|+++.+++++++++++++++.+.+|+
T Consensus 270 WII~gVlvPv~vV~~Iiiil~~~LCR 295 (684)
T PF12877_consen 270 WIIAGVLVPVLVVLLIIIILYWKLCR 295 (684)
T ss_pred EEEehHhHHHHHHHHHHHHHHHHHhc
Confidence 33333333333333333333344443
No 119
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=86.24 E-value=2.4 Score=27.66 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=13.7
Q ss_pred ceeEEEeeehHHHHHHHHHHHHHHHh
Q 037933 30 KIALIVLKYVLPLIVSTVLIVITIIM 55 (121)
Q Consensus 30 ~~~~~~~~i~~~~~~~~~~~~~~~~~ 55 (121)
.+...+++++.+++.+++++++..++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHH
Confidence 34445555555666555555554433
No 120
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=85.81 E-value=0.56 Score=27.98 Aligned_cols=7 Identities=14% Similarity=0.302 Sum_probs=3.3
Q ss_pred hhccCCC
Q 037933 59 CRNRSTK 65 (121)
Q Consensus 59 ~~~~~~~ 65 (121)
+++|+++
T Consensus 22 ~~rRR~r 28 (130)
T PF12273_consen 22 HNRRRRR 28 (130)
T ss_pred HHHHHhh
Confidence 3455544
No 121
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=85.38 E-value=0.73 Score=34.74 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=23.1
Q ss_pred CceeccCCcceeEEEEeCCCCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
.+.||+|.||+|.--++.++..||||
T Consensus 543 ~ekiGeGqFGEVhLCeveg~lkVAVK 568 (807)
T KOG1094|consen 543 KEKIGEGQFGEVHLCEVEGPLKVAVK 568 (807)
T ss_pred hhhhcCcccceeEEEEecCceEEEEe
Confidence 34799999999999999778999998
No 122
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=85.36 E-value=1 Score=32.43 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=21.5
Q ss_pred CceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
...+|+|+||.|-.|.= ..|..||||
T Consensus 177 ~~~LGsGafg~Vkla~e~~tgk~vAiK 203 (475)
T KOG0615|consen 177 SKTLGSGAFGLVKLAYEKKTGKQVAIK 203 (475)
T ss_pred eeeecCCceeEEEEEEEcccCcEEEee
Confidence 34689999999999865 568899997
No 123
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=85.16 E-value=0.65 Score=32.67 Aligned_cols=28 Identities=36% Similarity=0.631 Sum_probs=22.8
Q ss_pred CcCceeccCCcceeEEEE-eCCCCEEEeC
Q 037933 94 NECNLLGTGSFGSVYKGT-ISDGTDVAIK 121 (121)
Q Consensus 94 ~~~~~ig~g~~g~vykg~-l~~g~~vavK 121 (121)
.--..||+|.||..+-|. |-++.+||||
T Consensus 31 rVGkKIGeGsFG~lf~G~Nl~nne~VAIK 59 (449)
T KOG1165|consen 31 RVGKKIGEGSFGVLFLGKNLYNNEPVAIK 59 (449)
T ss_pred eeccccccCcceeeecccccccCceEEEE
Confidence 334479999999999986 4578999997
No 124
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=84.95 E-value=1 Score=30.73 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=23.5
Q ss_pred ceeccCCcceeEEEEeCCCCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
+.||-|.-+.||.|..++|.++|||
T Consensus 97 ~~IGvGKEsdVY~~~~~~g~~~~vK 121 (304)
T COG0478 97 TKIGVGKESDVYVAIDPKGRKVAVK 121 (304)
T ss_pred cccccCccceEEEEECCCCCEEEEE
Confidence 5899999999999999999999997
No 125
>PHA03207 serine/threonine kinase US3; Provisional
Probab=84.73 E-value=0.87 Score=32.02 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=22.2
Q ss_pred cCCcCceeccCCcceeEEEEeCC---CCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTISD---GTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~~---g~~vavK 121 (121)
.|.....||+|+||.||++...+ +..||+|
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK 125 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVK 125 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEEcCCccceeEEEE
Confidence 35555689999999999987532 3567776
No 126
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=83.83 E-value=1.2 Score=33.19 Aligned_cols=29 Identities=34% Similarity=0.654 Sum_probs=24.9
Q ss_pred cCCcCceeccCCcceeEEEEeCCCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
.|++ .-|+.-..|.||+|++++|..||||
T Consensus 163 ~f~~-~piaaASlaQVhrA~L~~G~~VaVK 191 (538)
T KOG1235|consen 163 EFDE-EPIAAASLAQVHRARLKNGEDVAVK 191 (538)
T ss_pred hcCc-chhhhcchhheEEEEecCCCEEEEE
Confidence 3554 4789999999999999999999998
No 127
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=82.98 E-value=1.2 Score=34.24 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.4
Q ss_pred CceeccCCcceeEEEEeCCC-CEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTISDG-TDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l~~g-~~vavK 121 (121)
++.|-+|||+.||-+...++ ..+|.|
T Consensus 42 ~~vLAEGGFa~VYla~~~~~~~~~AlK 68 (738)
T KOG1989|consen 42 EKVLAEGGFAQVYLAQDVKGGKKYALK 68 (738)
T ss_pred EEEEccCCcEEEEEEEecCCCceeeee
Confidence 45889999999999999666 888876
No 128
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.88 E-value=1.2 Score=32.44 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=23.2
Q ss_pred CcCceeccCCcceeEEEE-eCCCCEEEeC
Q 037933 94 NECNLLGTGSFGSVYKGT-ISDGTDVAIK 121 (121)
Q Consensus 94 ~~~~~ig~g~~g~vykg~-l~~g~~vavK 121 (121)
....+||.|-.++||+|. .+.+..||||
T Consensus 29 eL~e~IG~G~sa~V~~A~c~p~~e~VAIK 57 (516)
T KOG0582|consen 29 ELQEVIGVGASAVVYLARCIPTNEVVAIK 57 (516)
T ss_pred eEEEEEeccceeEeeeeeecccCCEEEEE
Confidence 334589999999999995 4778999997
No 129
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=82.62 E-value=1 Score=33.45 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=25.4
Q ss_pred hhccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 89 ATDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 89 ~~~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
..++|.-..+||.|.|.+||++.- ..+...|||
T Consensus 71 ~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiK 104 (604)
T KOG0592|consen 71 TPNDFKFGKILGEGSYSTVVLAREKATGKEYAIK 104 (604)
T ss_pred ChhhcchhheeccccceeEEEeeecCCCceeeHh
Confidence 344566666999999999999975 456778876
No 130
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=82.45 E-value=1.4 Score=30.13 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=15.9
Q ss_pred CCcCceeccCCcceeEEEEe
Q 037933 93 FNECNLLGTGSFGSVYKGTI 112 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l 112 (121)
+.-...||+|+||.||++..
T Consensus 14 ~~i~~~ig~G~~g~v~~~~~ 33 (334)
T cd05100 14 LTLGKPLGEGCFGQVVMAEA 33 (334)
T ss_pred eeecceeccccCCcEEEEEE
Confidence 33445899999999999964
No 131
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=82.22 E-value=4.2 Score=26.38 Aligned_cols=7 Identities=14% Similarity=-0.012 Sum_probs=2.7
Q ss_pred Hhhhhhh
Q 037933 54 IMYIRCR 60 (121)
Q Consensus 54 ~~~~~~~ 60 (121)
++++.||
T Consensus 122 Y~~~~Rr 128 (202)
T PF06365_consen 122 YCCHQRR 128 (202)
T ss_pred HHhhhhc
Confidence 3333333
No 132
>PHA03210 serine/threonine kinase US3; Provisional
Probab=81.22 E-value=1.1 Score=32.83 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=18.1
Q ss_pred ccCCcCceeccCCcceeEEEEe
Q 037933 91 DEFNECNLLGTGSFGSVYKGTI 112 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l 112 (121)
..|.....||+|+||.||++.+
T Consensus 148 ~~Y~ii~~LG~G~fG~Vyl~~~ 169 (501)
T PHA03210 148 AHFRVIDDLPAGAFGKIFICAL 169 (501)
T ss_pred hccEEEeEecCCCCcceEEEEE
Confidence 4566667899999999998865
No 133
>PF15050 SCIMP: SCIMP protein
Probab=81.08 E-value=1.2 Score=26.20 Aligned_cols=9 Identities=11% Similarity=0.098 Sum_probs=3.3
Q ss_pred HHHHHhhhh
Q 037933 50 VITIIMYIR 58 (121)
Q Consensus 50 ~~~~~~~~~ 58 (121)
.+++++.++
T Consensus 24 glIlyCvcR 32 (133)
T PF15050_consen 24 GLILYCVCR 32 (133)
T ss_pred HHHHHHHHH
Confidence 333333333
No 134
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=81.01 E-value=8.5 Score=28.01 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=17.8
Q ss_pred CCcCceeccCCcceeEEEEeCCC
Q 037933 93 FNECNLLGTGSFGSVYKGTISDG 115 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~~g 115 (121)
+....++-+|.||.||+|.|.++
T Consensus 286 v~l~~llqEGtFGri~~gI~~eE 308 (563)
T KOG1024|consen 286 VRLSCLLQEGTFGRIYRGIWREE 308 (563)
T ss_pred eechhhhhcCchhheeeeeeccc
Confidence 44455778999999999987544
No 135
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.89 E-value=1.4 Score=34.26 Aligned_cols=25 Identities=40% Similarity=0.715 Sum_probs=19.2
Q ss_pred ceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
-++|+|.||+||.|.-.+ ...+|||
T Consensus 581 vVLGKGTYG~VYA~RD~~tqvrIaIK 606 (1226)
T KOG4279|consen 581 VVLGKGTYGTVYAARDMDTQVRIAIK 606 (1226)
T ss_pred EEeecCceeEEEeeccccceeEEEee
Confidence 379999999999998533 3456776
No 136
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=80.70 E-value=1 Score=30.96 Aligned_cols=13 Identities=0% Similarity=0.110 Sum_probs=5.2
Q ss_pred eeehHHHHHHHHH
Q 037933 36 LKYVLPLIVSTVL 48 (121)
Q Consensus 36 ~~i~~~~~~~~~~ 48 (121)
+-|+++++++.++
T Consensus 273 vPIaVG~~La~lv 285 (306)
T PF01299_consen 273 VPIAVGAALAGLV 285 (306)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444433333
No 137
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=80.59 E-value=1.8 Score=31.44 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=21.2
Q ss_pred CCcCceeccCCcceeEEEEeC-C-CCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTIS-D-GTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~-~-g~~vavK 121 (121)
|...+.||+|++|.||++.-. + +..||+|
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K 99 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAK 99 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEE
Confidence 444568999999999999752 3 4566665
No 138
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=79.56 E-value=0.69 Score=24.08 Aligned_cols=9 Identities=22% Similarity=0.534 Sum_probs=0.4
Q ss_pred Hhhhhhhcc
Q 037933 54 IMYIRCRNR 62 (121)
Q Consensus 54 ~~~~~~~~~ 62 (121)
++..|.|++
T Consensus 31 f~iyR~rkk 39 (64)
T PF01034_consen 31 FLIYRMRKK 39 (64)
T ss_dssp ------S--
T ss_pred HHHHHHHhc
Confidence 333333333
No 139
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=79.26 E-value=0.79 Score=27.19 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred Hhhhhh
Q 037933 54 IMYIRC 59 (121)
Q Consensus 54 ~~~~~~ 59 (121)
++++++
T Consensus 98 ~lv~rr 103 (129)
T PF12191_consen 98 FLVWRR 103 (129)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 333333
No 140
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=79.10 E-value=0.78 Score=34.63 Aligned_cols=24 Identities=38% Similarity=0.743 Sum_probs=20.7
Q ss_pred ceeccCCcceeEEEEeCCCCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
+-+|+|.-|.||.|.| .+..||||
T Consensus 130 eWlGSGaQGAVF~Grl-~netVAVK 153 (904)
T KOG4721|consen 130 EWLGSGAQGAVFLGRL-HNETVAVK 153 (904)
T ss_pred hhhccCcccceeeeec-cCceehhH
Confidence 3689999999999999 56678887
No 141
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=78.94 E-value=1.9 Score=31.71 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=25.0
Q ss_pred hccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 90 TDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 90 ~~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.+.|.....||+|.||.|-.|.- .++..+|||
T Consensus 96 lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiK 128 (576)
T KOG0585|consen 96 LNQYELIKEIGSGQYGKVKLARDEVDGKLYAIK 128 (576)
T ss_pred hhheehhhhhcCCccceEEEEeecCCCcEEEEE
Confidence 34455566899999999998875 457889987
No 142
>PF15345 TMEM51: Transmembrane protein 51
Probab=77.54 E-value=5.8 Score=26.24 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=5.9
Q ss_pred ccCHHHHHHh
Q 037933 80 RTSYLDIQRA 89 (121)
Q Consensus 80 ~~~~~~l~~~ 89 (121)
.-+|+|.+..
T Consensus 124 vPSYEEvv~s 133 (233)
T PF15345_consen 124 VPSYEEVVNS 133 (233)
T ss_pred CCChHHHHhc
Confidence 4567776543
No 143
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=76.61 E-value=0.54 Score=27.36 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=0.8
Q ss_pred HHHHHHHHHHHHHH-Hhhhhhhc
Q 037933 40 LPLIVSTVLIVITI-IMYIRCRN 61 (121)
Q Consensus 40 ~~~~~~~~~~~~~~-~~~~~~~~ 61 (121)
|+++.+++.+++++ +++++||.
T Consensus 29 IGiL~VILgiLLliGCWYckRRS 51 (118)
T PF14991_consen 29 IGILIVILGILLLIGCWYCKRRS 51 (118)
T ss_dssp SS---------------------
T ss_pred ceeHHHHHHHHHHHhheeeeecc
Confidence 34444444333333 45555543
No 144
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=76.41 E-value=2.7 Score=30.08 Aligned_cols=24 Identities=8% Similarity=-0.072 Sum_probs=11.0
Q ss_pred ceeEEEeeehHHHHHHHHHHHHHH
Q 037933 30 KIALIVLKYVLPLIVSTVLIVITI 53 (121)
Q Consensus 30 ~~~~~~~~i~~~~~~~~~~~~~~~ 53 (121)
.+...++.|.+++++++-.++-++
T Consensus 364 LstgaIaGIsvavvvvVgglvGfL 387 (397)
T PF03302_consen 364 LSTGAIAGISVAVVVVVGGLVGFL 387 (397)
T ss_pred ccccceeeeeehhHHHHHHHHHHH
Confidence 344445555555444443333334
No 145
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=75.30 E-value=1.1 Score=29.58 Aligned_cols=27 Identities=37% Similarity=0.486 Sum_probs=20.9
Q ss_pred cCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 95 ECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 95 ~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
....||+|++|.|-|-.+ ++|+..|||
T Consensus 50 ~i~elGrGayG~vekmrh~~sg~imAvK 77 (282)
T KOG0984|consen 50 GIEELGRGAYGVVEKMRHIQSGTIMAVK 77 (282)
T ss_pred hhhhhcCCccchhhheeeccCCeEEEEe
Confidence 334689999999866554 688999987
No 146
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=74.20 E-value=2.5 Score=27.14 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=19.5
Q ss_pred CceeccCCcceeEEEEeCCCCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
...|++|.++.||.+.+.++ .+|+|
T Consensus 27 ~~~L~KG~~s~Vyl~~~~~~-~~a~K 51 (201)
T COG2112 27 EKELAKGTTSVVYLGEWRGG-EVALK 51 (201)
T ss_pred hhhhhcccccEEEEeeccCc-eEEEE
Confidence 34789999999999999544 66654
No 147
>PHA03265 envelope glycoprotein D; Provisional
Probab=73.86 E-value=3.1 Score=29.21 Aligned_cols=10 Identities=10% Similarity=0.414 Sum_probs=4.2
Q ss_pred HHhhhhhhcc
Q 037933 53 IIMYIRCRNR 62 (121)
Q Consensus 53 ~~~~~~~~~~ 62 (121)
++++++||+.
T Consensus 368 l~~~~rr~k~ 377 (402)
T PHA03265 368 LYVCLRRKKE 377 (402)
T ss_pred HHHHhhhhhh
Confidence 3444444443
No 148
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=73.06 E-value=6.2 Score=21.94 Aligned_cols=13 Identities=8% Similarity=0.422 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHh
Q 037933 43 IVSTVLIVITIIM 55 (121)
Q Consensus 43 ~~~~~~~~~~~~~ 55 (121)
++.+++.++++++
T Consensus 40 I~~iFil~Vilwf 52 (94)
T PF05393_consen 40 ICGIFILLVILWF 52 (94)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333344433
No 149
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]
Probab=72.73 E-value=1.2 Score=34.05 Aligned_cols=29 Identities=31% Similarity=0.609 Sum_probs=20.7
Q ss_pred CCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+.....+|+|.||.|||+.- ..+.+.|||
T Consensus 17 yellqrvgsgTygdvyKaRd~~s~elaavk 46 (829)
T KOG0576|consen 17 YELLQRVGSGTYGDVYKARDKRSGELAAVK 46 (829)
T ss_pred hhheeeecCCcccchhhhcccccCchhhhe
Confidence 33345899999999999975 345555654
No 150
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=72.34 E-value=3.3 Score=27.42 Aligned_cols=30 Identities=10% Similarity=-0.088 Sum_probs=23.9
Q ss_pred ccCCcCceeccCCcceeEEEEeCCCCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
..+...+++|.|+||.||.... ++..+|+|
T Consensus 31 ~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiK 60 (232)
T PRK10359 31 YNIKTIKVFRNIDDTKVSLIDT-DYGKYILK 60 (232)
T ss_pred CceEEEEEecCCCceEEEEEec-CCCcEEEE
Confidence 4577788999999999998766 45577776
No 151
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=71.55 E-value=4.4 Score=26.37 Aligned_cols=30 Identities=43% Similarity=0.638 Sum_probs=24.2
Q ss_pred ccCCcCceeccCCc-ceeEEEEeCCCCEEEeC
Q 037933 91 DEFNECNLLGTGSF-GSVYKGTISDGTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~-g~vykg~l~~g~~vavK 121 (121)
..+.--+.+|.|.. |.|||..+ +|...|+|
T Consensus 37 ~~I~flefLg~g~~~~~V~kv~I-~g~~YALK 67 (207)
T PF13095_consen 37 DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALK 67 (207)
T ss_pred CcEeeeeecCCCCceeEEEEEEE-CCeEEEEE
Confidence 34555568999999 99999999 67788887
No 152
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=71.35 E-value=2.7 Score=31.75 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=20.2
Q ss_pred CceeccCCcceeEEEEeCC--------CCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTISD--------GTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l~~--------g~~vavK 121 (121)
...+|+|.||.|++|.+.+ ...||||
T Consensus 301 ~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK 334 (609)
T KOG0200|consen 301 GKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVK 334 (609)
T ss_pred cceeecccccceEeEEEeecccccccceEEEEEE
Confidence 3489999999999998632 3467876
No 153
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=71.12 E-value=5.2 Score=28.15 Aligned_cols=23 Identities=30% Similarity=0.723 Sum_probs=17.7
Q ss_pred cCCcCceeccCCcceeEEEEeCC
Q 037933 92 EFNECNLLGTGSFGSVYKGTISD 114 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~~ 114 (121)
.+.....||+|.||.|||++-.+
T Consensus 25 ~ye~ig~Ig~GTYG~VykA~~~~ 47 (438)
T KOG0666|consen 25 EYEGIGKIGRGTYGKVYKAVRKN 47 (438)
T ss_pred HhhccceecccccceeeEeeecc
Confidence 35555679999999999996533
No 154
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=70.86 E-value=2.9 Score=28.81 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=20.7
Q ss_pred eeccCCcceeEEEEeCC-CCEEEeC
Q 037933 98 LLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 98 ~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
.+|+|.-|.|+|..... |..+|||
T Consensus 99 dlGsGtcG~V~k~~~rs~~~iiAVK 123 (391)
T KOG0983|consen 99 DLGSGTCGQVWKMRFRSTGHIIAVK 123 (391)
T ss_pred hhcCCCccceEEEEEcccceEEEEE
Confidence 58999999999998844 7888987
No 155
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.71 E-value=0.23 Score=33.56 Aligned_cols=25 Identities=40% Similarity=0.805 Sum_probs=19.2
Q ss_pred ceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
+.||+|.||.|+++.-.+ |..||+|
T Consensus 23 ~kigqGtfgeVFkAr~~n~~kkvalk 48 (376)
T KOG0669|consen 23 AKIGQGTFGEVFKARSKNTGKKVALK 48 (376)
T ss_pred HhcCCchHHHHHHHhhcCccchhHHH
Confidence 378999999999998754 4556654
No 156
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=70.28 E-value=2.7 Score=33.13 Aligned_cols=34 Identities=38% Similarity=0.688 Sum_probs=25.0
Q ss_pred HhhccCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 88 RATDEFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 88 ~~~~~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
..+..|--..+||.|.+|.|||+.- .+++..|||
T Consensus 16 dp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~k 50 (953)
T KOG0587|consen 16 DPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIK 50 (953)
T ss_pred CCCCccEEEEEEeeccceeEEEEeeeecCceeeeE
Confidence 3344455556999999999999964 567777776
No 157
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=70.21 E-value=5 Score=24.56 Aligned_cols=6 Identities=0% Similarity=0.562 Sum_probs=2.3
Q ss_pred ehHHHH
Q 037933 38 YVLPLI 43 (121)
Q Consensus 38 i~~~~~ 43 (121)
|+++++
T Consensus 34 ILiaIv 39 (189)
T PF05568_consen 34 ILIAIV 39 (189)
T ss_pred HHHHHH
Confidence 333333
No 158
>PF15102 TMEM154: TMEM154 protein family
Probab=70.00 E-value=4.5 Score=24.79 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=10.3
Q ss_pred eEEEeeehHHHHHHHHHHHHHHH
Q 037933 32 ALIVLKYVLPLIVSTVLIVITII 54 (121)
Q Consensus 32 ~~~~~~i~~~~~~~~~~~~~~~~ 54 (121)
-..+++-.+..++++++++++++
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~ 80 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVI 80 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHhee
Confidence 45555544444444444433333
No 159
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=69.72 E-value=13 Score=25.36 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=8.4
Q ss_pred eeEEEeeehHHHHHHHH
Q 037933 31 IALIVLKYVLPLIVSTV 47 (121)
Q Consensus 31 ~~~~~~~i~~~~~~~~~ 47 (121)
.+..++.|.+++++.++
T Consensus 225 ~~G~VVlIslAiALG~v 241 (281)
T PF12768_consen 225 SRGFVVLISLAIALGTV 241 (281)
T ss_pred cceEEEEEehHHHHHHH
Confidence 44455555555544443
No 160
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.09 E-value=4.1 Score=30.36 Aligned_cols=29 Identities=38% Similarity=0.675 Sum_probs=22.8
Q ss_pred CCcCceeccCCcceeEEEE-eCCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGT-ISDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~-l~~g~~vavK 121 (121)
+..-..||+|..|.||-+. ...+..||||
T Consensus 275 y~~~~kigqgaSG~vy~A~~~~~~~~VaiK 304 (550)
T KOG0578|consen 275 YTDFKKIGQGATGGVYVARKISTKQEVAIK 304 (550)
T ss_pred hcchhhhccccccceeeeeeccCCceEEEE
Confidence 3444579999999999885 4667889987
No 161
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=68.42 E-value=17 Score=24.88 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=9.9
Q ss_pred EEEeeehHHHHHHHHHHHHHH
Q 037933 33 LIVLKYVLPLIVSTVLIVITI 53 (121)
Q Consensus 33 ~~~~~i~~~~~~~~~~~~~~~ 53 (121)
..-+++++++++++.++.+++
T Consensus 231 lIslAiALG~v~ll~l~Gii~ 251 (281)
T PF12768_consen 231 LISLAIALGTVFLLVLIGIIL 251 (281)
T ss_pred EEehHHHHHHHHHHHHHHHHH
Confidence 334555555555554444433
No 162
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=67.49 E-value=16 Score=19.69 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=13.0
Q ss_pred EEEeeehHHHHHHHHHHHHHH
Q 037933 33 LIVLKYVLPLIVSTVLIVITI 53 (121)
Q Consensus 33 ~~~~~i~~~~~~~~~~~~~~~ 53 (121)
...++++++.+.++.+++.+.
T Consensus 29 ~~avaVviPl~L~LCiLvl~y 49 (74)
T PF11857_consen 29 VNAVAVVIPLVLLLCILVLIY 49 (74)
T ss_pred eeEEEEeHHHHHHHHHHHHHH
Confidence 345667777766666655544
No 163
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=66.70 E-value=2 Score=31.53 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=17.5
Q ss_pred cCCcCceeccCCcceeEEEEe
Q 037933 92 EFNECNLLGTGSFGSVYKGTI 112 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l 112 (121)
.|..-.+||+|+||.||-.+.
T Consensus 186 ~F~~~RvlGkGGFGEV~acqv 206 (591)
T KOG0986|consen 186 TFRVYRVLGKGGFGEVCACQV 206 (591)
T ss_pred ceeeeEEEecccccceeEEEE
Confidence 377777999999999997665
No 164
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=65.04 E-value=3.8 Score=29.85 Aligned_cols=24 Identities=42% Similarity=0.655 Sum_probs=21.1
Q ss_pred eeccCCcceeEEEEe-CCCCEEEeC
Q 037933 98 LLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 98 ~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.+|+|.||.|-++.- ..|..||||
T Consensus 60 tLGkGTYGKVk~A~e~~sgR~VAiK 84 (668)
T KOG0611|consen 60 TLGKGTYGKVKLAYEHKSGREVAIK 84 (668)
T ss_pred HhcCCcccceeehhhccCCcEeehh
Confidence 689999999999875 678999997
No 165
>PTZ00087 thrombosponding-related protein; Provisional
Probab=64.88 E-value=19 Score=24.63 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=10.6
Q ss_pred eEEEeeehHHHHHHHHHHHH
Q 037933 32 ALIVLKYVLPLIVSTVLIVI 51 (121)
Q Consensus 32 ~~~~~~i~~~~~~~~~~~~~ 51 (121)
...+.+++++++.++.++.+
T Consensus 295 t~~i~~i~~piv~vi~v~~i 314 (340)
T PTZ00087 295 TFKILIILLPIVLIICVMGI 314 (340)
T ss_pred cceEeeeehhHHHHHHHHHH
Confidence 34456666666555544443
No 166
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=62.43 E-value=11 Score=20.31 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=2.2
Q ss_pred HHHHHH
Q 037933 48 LIVITI 53 (121)
Q Consensus 48 ~~~~~~ 53 (121)
++.+.+
T Consensus 17 Vap~WL 22 (75)
T PF06667_consen 17 VAPIWL 22 (75)
T ss_pred HHHHHH
Confidence 333333
No 167
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=62.23 E-value=4.4 Score=33.57 Aligned_cols=30 Identities=33% Similarity=0.684 Sum_probs=23.7
Q ss_pred cCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.+...+.||.|-||.||-+.- +.|...|||
T Consensus 1236 rWqrg~~Ig~G~fG~VYtavN~~tGellAvK 1266 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNLDTGELLAVK 1266 (1509)
T ss_pred eeccccccCCcceeeeEEeecCCccchhhhh
Confidence 355577899999999998874 567777776
No 168
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=61.06 E-value=4 Score=30.71 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=20.0
Q ss_pred ceeccCCcceeEEEEeCCCCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
..||+||...|||....+.+.+|.|
T Consensus 367 k~iG~GGSSkV~kV~~s~~~iyalk 391 (677)
T KOG0596|consen 367 KQIGSGGSSKVFKVLNSDKQIYALK 391 (677)
T ss_pred HhhcCCCcceeeeeecCCCcchhhh
Confidence 3689999999999988776666654
No 169
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=60.28 E-value=22 Score=22.27 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 037933 43 IVSTVLIVITIIMYIRCR 60 (121)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~ 60 (121)
+++.+.++++.++|.+++
T Consensus 157 ~VlA~~VA~L~~~F~RR~ 174 (215)
T PF05084_consen 157 VVLAVSVAMLTWFFLRRT 174 (215)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333333444444444443
No 170
>PF15431 TMEM190: Transmembrane protein 190
Probab=59.30 E-value=3.7 Score=23.82 Aligned_cols=26 Identities=12% Similarity=-0.020 Sum_probs=13.4
Q ss_pred EeeehHHHHHHHHHHHHHHHhhhhhh
Q 037933 35 VLKYVLPLIVSTVLIVITIIMYIRCR 60 (121)
Q Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~ 60 (121)
+.++......++++++.+.++++-+|
T Consensus 61 mWaL~wtC~gll~Li~~iclFWWAkR 86 (134)
T PF15431_consen 61 MWALGWTCGGLLLLICSICLFWWAKR 86 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44444555555555555555444433
No 171
>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A.
Probab=58.58 E-value=8.9 Score=26.32 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=22.4
Q ss_pred CcCceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 94 NECNLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 94 ~~~~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
.....||.|+++.||.++-.. ++..|||
T Consensus 15 ~~~~~i~~g~~~~v~~v~d~~t~~~~avk 43 (288)
T PF14531_consen 15 VRGRIIGKGGFSIVFEVTDVETGEEFAVK 43 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTTTEEEEEE
T ss_pred EEccccccCCceEEEEEEEccCCceEEEE
Confidence 334589999999999999854 6788875
No 172
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=56.80 E-value=12 Score=21.03 Aligned_cols=19 Identities=32% Similarity=0.868 Sum_probs=14.6
Q ss_pred ccC-CcceeEEEEeCCCCEEEe
Q 037933 100 GTG-SFGSVYKGTISDGTDVAI 120 (121)
Q Consensus 100 g~g-~~g~vykg~l~~g~~vav 120 (121)
|+| .-|++|+ +++|..+-|
T Consensus 71 G~G~~~G~aYr--l~~Gk~I~V 90 (92)
T PF09919_consen 71 GSGERLGTAYR--LKDGKLIYV 90 (92)
T ss_pred CCCeECeEEEE--cCCceEEEe
Confidence 455 5699999 888987765
No 173
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=56.68 E-value=13 Score=26.41 Aligned_cols=35 Identities=37% Similarity=0.638 Sum_probs=26.6
Q ss_pred CHHHHHHhhccCCcCceeccCCcceeEEEE-eCCCCEEEeC
Q 037933 82 SYLDIQRATDEFNECNLLGTGSFGSVYKGT-ISDGTDVAIK 121 (121)
Q Consensus 82 ~~~~l~~~~~~~~~~~~ig~g~~g~vykg~-l~~g~~vavK 121 (121)
.|+++.+.|.+ ++|+|.|+.|-..+ +..|...|||
T Consensus 74 ~F~d~YkLt~e-----~LGeGAyasVqtcv~i~t~~EYAVK 109 (463)
T KOG0607|consen 74 KFEDMYKLTSE-----LLGEGAYASVQTCVSIQTGKEYAVK 109 (463)
T ss_pred hHHHHHHhHHH-----HhcCccceeeeeeeeeccchhhhhh
Confidence 46788887764 89999999987554 4677777776
No 174
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=56.60 E-value=14 Score=26.94 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=20.9
Q ss_pred CceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
...+|+|..|+||-+.+.+ +...|+|
T Consensus 82 lk~LG~GdiG~VyL~~l~~t~~~fAmK 108 (459)
T KOG0610|consen 82 LKRLGCGDIGTVYLVELRGTNCLFAMK 108 (459)
T ss_pred HHHcCCCCceeEEEEEecCCCceEEEE
Confidence 3478999999999999955 3677776
No 175
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=56.32 E-value=12 Score=25.41 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=20.4
Q ss_pred eeccCCcceeEEEEeCCCCEEEeC
Q 037933 98 LLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 98 ~ig~g~~g~vykg~l~~g~~vavK 121 (121)
.|+.|.-..||+|.-.++..+|||
T Consensus 55 ~istGKEA~Vy~a~~~~~~~~avK 78 (268)
T COG1718 55 CISTGKEANVYLAETGDGRYVAVK 78 (268)
T ss_pred eecCCcceEEEeeccCCCceEEEE
Confidence 567788889999998788899987
No 176
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.95 E-value=7.4 Score=26.94 Aligned_cols=26 Identities=38% Similarity=0.566 Sum_probs=19.1
Q ss_pred CceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
..-||.|.||.||...- ++|..||.|
T Consensus 58 DRPIGYGAFGVVWsVTDPRdgrrvalk 84 (449)
T KOG0664|consen 58 DRPIGYGAFGVVWSVTDPRSGKRVALK 84 (449)
T ss_pred CCcccccceeEEEeccCCCCccchhHh
Confidence 44799999999998776 446666544
No 177
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=55.28 E-value=17 Score=23.97 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=18.7
Q ss_pred Cceec-cCCcceeEEEEeCCCCEEEeC
Q 037933 96 CNLLG-TGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 96 ~~~ig-~g~~g~vykg~l~~g~~vavK 121 (121)
..++| .|+.|+||+.... +..+++|
T Consensus 36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk 61 (239)
T PRK01723 36 ARVVGSAKGRGTTWFVQTP-GVNWVLR 61 (239)
T ss_pred CceeecCCCCccEEEEEeC-CceEEEE
Confidence 45788 8999999999885 4455553
No 178
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=54.93 E-value=12 Score=28.30 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=23.8
Q ss_pred cCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
.+.....||+|.|+.|.-+.. ..++.||+|
T Consensus 57 ~y~i~~tig~g~f~~V~La~~~~t~~~VaiK 87 (596)
T KOG0586|consen 57 LYVIIKTIGKGNFAKVKLARHILTGTEVAIK 87 (596)
T ss_pred ceeeeeeeccceeEEEEeeEecCCCceEEEE
Confidence 345556899999999998875 458899987
No 179
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.65 E-value=6.9 Score=28.67 Aligned_cols=30 Identities=40% Similarity=0.486 Sum_probs=21.3
Q ss_pred cCCcCceeccCCcceeEEEEeCCC-CEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTISDG-TDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l~~g-~~vavK 121 (121)
+|+-..+||+|.||.|.-+.-++- ...|||
T Consensus 350 DFnFl~VlGKGSFGKVlLaerkgtdELyAiK 380 (683)
T KOG0696|consen 350 DFNFLMVLGKGSFGKVLLAERKGTDELYAIK 380 (683)
T ss_pred ccceEEEeccCccceeeeecccCcchhhhhh
Confidence 477677999999999998875332 344554
No 180
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.84 E-value=2.7 Score=32.41 Aligned_cols=16 Identities=50% Similarity=0.862 Sum_probs=14.0
Q ss_pred eeccCCcceeEEEEeC
Q 037933 98 LLGTGSFGSVYKGTIS 113 (121)
Q Consensus 98 ~ig~g~~g~vykg~l~ 113 (121)
.+|.|.||.|||++-.
T Consensus 39 ELGDGAFGKVyKA~nk 54 (1187)
T KOG0579|consen 39 ELGDGAFGKVYKAVNK 54 (1187)
T ss_pred hhcCccchhhhhhhcc
Confidence 5799999999999864
No 181
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=53.55 E-value=4.4 Score=28.84 Aligned_cols=24 Identities=13% Similarity=0.386 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH-H-hhhhhhcc
Q 037933 39 VLPLIVSTVLIVITI-I-MYIRCRNR 62 (121)
Q Consensus 39 ~~~~~~~~~~~~~~~-~-~~~~~~~~ 62 (121)
|.+|+++++++.+++ . +||+.++.
T Consensus 12 ITgIcvaLlVVGi~Cvv~aYCKTKKQ 37 (404)
T PF02158_consen 12 ITGICVALLVVGIVCVVDAYCKTKKQ 37 (404)
T ss_dssp --------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 334444444444444 5 66665443
No 182
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=53.26 E-value=4.4 Score=27.49 Aligned_cols=26 Identities=31% Similarity=0.513 Sum_probs=0.0
Q ss_pred EeeehHHHHHHHHHHHHHHHhhhhhh
Q 037933 35 VLKYVLPLIVSTVLIVITIIMYIRCR 60 (121)
Q Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~ 60 (121)
+..++++.++++++.+..+++|++|+
T Consensus 227 vf~lLVPSiILVLLaVGGLLfYr~rr 252 (285)
T PF05337_consen 227 VFYLLVPSIILVLLAVGGLLFYRRRR 252 (285)
T ss_dssp --------------------------
T ss_pred cccccccchhhhhhhccceeeecccc
Confidence 33444444444444444444444333
No 183
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=53.00 E-value=45 Score=19.54 Aligned_cols=26 Identities=27% Similarity=0.687 Sum_probs=15.7
Q ss_pred CCcCceeccC---CcceeEEEEeCCCCEEEe
Q 037933 93 FNECNLLGTG---SFGSVYKGTISDGTDVAI 120 (121)
Q Consensus 93 ~~~~~~ig~g---~~g~vykg~l~~g~~vav 120 (121)
|+....+|.| ..|++|+ +.+|..+-|
T Consensus 84 ~~~t~~iggg~g~~lGt~yR--~adgr~I~V 112 (121)
T COG4744 84 LNMTARIGGGTGEALGTAYR--LADGRVIYV 112 (121)
T ss_pred hhccccccCcccceeeeEEe--cCCCeEEEe
Confidence 4444456666 3488998 666765543
No 184
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=52.19 E-value=18 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.374 Sum_probs=19.0
Q ss_pred EeeehHHHHHHHHHHHH-HHHhhhhhhccCCC
Q 037933 35 VLKYVLPLIVSTVLIVI-TIIMYIRCRNRSTK 65 (121)
Q Consensus 35 ~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 65 (121)
-++|++++++.++++++ ++++++...++.+.
T Consensus 268 NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~ 299 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLLIIIILYWKLCRKNKL 299 (684)
T ss_pred CeEEEehHhHHHHHHHHHHHHHHHHHhccccc
Confidence 56666666555554444 44788888876544
No 185
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=51.01 E-value=18 Score=22.87 Aligned_cols=20 Identities=5% Similarity=0.208 Sum_probs=7.4
Q ss_pred eeehHHHHHHHHHHHHHHHh
Q 037933 36 LKYVLPLIVSTVLIVITIIM 55 (121)
Q Consensus 36 ~~i~~~~~~~~~~~~~~~~~ 55 (121)
++.|+++++++++-++..++
T Consensus 117 IaGIvsav~valvGAvsSyi 136 (169)
T PF12301_consen 117 IAGIVSAVVVALVGAVSSYI 136 (169)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333343
No 186
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.28 E-value=37 Score=17.73 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=12.1
Q ss_pred EEEeeehHHHHHHHHHHHHHH-Hhhhh
Q 037933 33 LIVLKYVLPLIVSTVLIVITI-IMYIR 58 (121)
Q Consensus 33 ~~~~~i~~~~~~~~~~~~~~~-~~~~~ 58 (121)
..++.++++...+++++.-.. ++|++
T Consensus 13 GlIVLlvV~g~ll~flvGnyvlY~Yaq 39 (69)
T PF04689_consen 13 GLIVLLVVAGLLLVFLVGNYVLYVYAQ 39 (69)
T ss_pred CeEEeehHHHHHHHHHHHHHHHHHHHh
Confidence 345555555544444443333 44544
No 187
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=50.22 E-value=5.8 Score=30.06 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=15.0
Q ss_pred CceeccCCcceeEEEEe
Q 037933 96 CNLLGTGSFGSVYKGTI 112 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l 112 (121)
..+||+|.|-+||||.-
T Consensus 45 ~evLGrGafKtVYka~D 61 (632)
T KOG0584|consen 45 DEVLGRGAFKTVYKAFD 61 (632)
T ss_pred hhhcccccceeeeeccc
Confidence 34899999999999985
No 188
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=49.52 E-value=4.7 Score=32.92 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=22.4
Q ss_pred hccCCcCceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 90 TDEFNECNLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 90 ~~~~~~~~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
..+|.-..+||+|.||.|.-....+ +...|.|
T Consensus 74 ~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK 106 (1317)
T KOG0612|consen 74 AEDFEILKVIGRGAFGEVALVRHKSTEKVYAMK 106 (1317)
T ss_pred HHhhHHHHHhcccccceeEEEEeeccccchhHH
Confidence 3456666699999999999887744 4444543
No 189
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.52 E-value=9.1 Score=27.27 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=22.8
Q ss_pred ccCCcCceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 91 DEFNECNLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 91 ~~~~~~~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
++|..-.+||+|.|..|..+.+.. .+..|+|
T Consensus 250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamk 281 (593)
T KOG0695|consen 250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMK 281 (593)
T ss_pred ccceeeeeecCcchhhhhheehcccceeeehh
Confidence 357777899999999999888744 3445554
No 190
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=47.34 E-value=13 Score=21.04 Aligned_cols=6 Identities=17% Similarity=0.606 Sum_probs=2.7
Q ss_pred CCCCCC
Q 037933 18 PPCKPD 23 (121)
Q Consensus 18 ~~~~~~ 23 (121)
.+|...
T Consensus 19 vhcqa~ 24 (98)
T PF07204_consen 19 VHCQAS 24 (98)
T ss_pred hheecc
Confidence 455443
No 191
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=45.91 E-value=25 Score=24.68 Aligned_cols=29 Identities=41% Similarity=0.534 Sum_probs=20.3
Q ss_pred CCcCceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
|.-...+|.|.||.|.-...+ +|...|.|
T Consensus 46 fe~~~tlGtGSFGrV~LVr~k~~g~yYAmK 75 (355)
T KOG0616|consen 46 FERLKTLGTGSFGRVHLVREKHSGNYYAMK 75 (355)
T ss_pred hhheeeeccCccceEEEEEEccCCceeehh
Confidence 333448999999999877763 35566655
No 192
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=45.47 E-value=45 Score=22.22 Aligned_cols=7 Identities=29% Similarity=0.677 Sum_probs=2.7
Q ss_pred hhhhhcc
Q 037933 56 YIRCRNR 62 (121)
Q Consensus 56 ~~~~~~~ 62 (121)
|+.++++
T Consensus 211 yr~C~k~ 217 (259)
T PF07010_consen 211 YRMCWKT 217 (259)
T ss_pred HHHhhcC
Confidence 3333433
No 193
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=45.14 E-value=26 Score=22.53 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=12.5
Q ss_pred eEEEeeehHHHHHHHHHHHHHHH
Q 037933 32 ALIVLKYVLPLIVSTVLIVITII 54 (121)
Q Consensus 32 ~~~~~~i~~~~~~~~~~~~~~~~ 54 (121)
..+....+|+.+++.+.+..++|
T Consensus 156 s~FD~~SFiGGIVL~LGv~aI~f 178 (186)
T PF05283_consen 156 STFDAASFIGGIVLTLGVLAIIF 178 (186)
T ss_pred CCCchhhhhhHHHHHHHHHHHHH
Confidence 34566666666665554444443
No 194
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=44.56 E-value=22 Score=20.34 Aligned_cols=8 Identities=38% Similarity=0.434 Sum_probs=3.4
Q ss_pred cCCcCcee
Q 037933 92 EFNECNLL 99 (121)
Q Consensus 92 ~~~~~~~i 99 (121)
+|-+.|-|
T Consensus 86 GFIEDnYI 93 (102)
T PF15176_consen 86 GFIEDNYI 93 (102)
T ss_pred ccccccCc
Confidence 34444443
No 195
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=44.28 E-value=38 Score=19.97 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=10.0
Q ss_pred EeeehHHHHHHHHHHHHHH
Q 037933 35 VLKYVLPLIVSTVLIVITI 53 (121)
Q Consensus 35 ~~~i~~~~~~~~~~~~~~~ 53 (121)
.+-.+|+.++++.+..+..
T Consensus 85 aLp~VIGGLcaL~LaamGA 103 (126)
T PF03229_consen 85 ALPLVIGGLCALTLAAMGA 103 (126)
T ss_pred chhhhhhHHHHHHHHHHHH
Confidence 4455555555555554444
No 196
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=44.28 E-value=14 Score=25.21 Aligned_cols=26 Identities=38% Similarity=0.436 Sum_probs=18.9
Q ss_pred CceeccCCcceeEEEE-eCCCCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGT-ISDGTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~-l~~g~~vavK 121 (121)
...+|.|||..||-++ +..+...|+|
T Consensus 26 ~~~LgeGGfsfv~LV~~~s~~~~YAlK 52 (302)
T KOG2345|consen 26 QRLLGEGGFSFVDLVKGLSTGHLYALK 52 (302)
T ss_pred eeeecCCCceeeeeecccCcccchhhh
Confidence 3478999999999776 4555555554
No 197
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=42.43 E-value=8 Score=26.12 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=18.8
Q ss_pred ceeccCCcceeEEEE-eCCCCEEEeC
Q 037933 97 NLLGTGSFGSVYKGT-ISDGTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~-l~~g~~vavK 121 (121)
+.+|+|.|..|+.|. +.+...+.||
T Consensus 44 rk~GRGKYSEVFeg~~~~~~eK~ViK 69 (338)
T KOG0668|consen 44 RKVGRGKYSEVFEGINITNNEKCVIK 69 (338)
T ss_pred HHHcCccHhhHhcccccCCCceEEEe
Confidence 368999999999996 3555566554
No 198
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=42.24 E-value=17 Score=25.10 Aligned_cols=13 Identities=46% Similarity=0.705 Sum_probs=8.1
Q ss_pred HhhhhhhccCCCC
Q 037933 54 IMYIRCRNRSTKK 66 (121)
Q Consensus 54 ~~~~~~~~~~~~~ 66 (121)
+.|+.-|.||.+.
T Consensus 274 IIYLILRYRRKKK 286 (299)
T PF02009_consen 274 IIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHhh
Confidence 5566677666553
No 199
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=41.62 E-value=19 Score=27.38 Aligned_cols=24 Identities=38% Similarity=0.619 Sum_probs=19.5
Q ss_pred eeccCCcceeEEEEe-CCCCEEEeC
Q 037933 98 LLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 98 ~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
-.|+|-|++|.+|.- ..|..||||
T Consensus 439 ~~GkGvFs~Vvra~D~~r~~~vAiK 463 (752)
T KOG0670|consen 439 YTGKGVFSTVVRARDQARGQEVAIK 463 (752)
T ss_pred ccccceeeeeeeccccCCCCeeEEE
Confidence 348999999999975 447899997
No 200
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=41.62 E-value=60 Score=22.72 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=20.5
Q ss_pred CCcCceeccCCcceeEEEEeC-CCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTIS-DGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~-~g~~vavK 121 (121)
|.-+..+|.|.||.+.-++-+ ..+.+++|
T Consensus 26 y~I~k~lgeG~FgkIlL~eHr~s~t~ivlK 55 (378)
T KOG1345|consen 26 YTINKQLGEGRFGKILLAEHRQSKTRIVLK 55 (378)
T ss_pred hhHHHHhcccceeeEEeeeccCCceEEEee
Confidence 344458899999999888763 34566655
No 201
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=41.09 E-value=30 Score=26.65 Aligned_cols=29 Identities=28% Similarity=0.515 Sum_probs=20.9
Q ss_pred CCcCceeccCCcceeEEEEeCCC-CEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKGTISDG-TDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg~l~~g-~~vavK 121 (121)
|.-...+|.|.||.|.-+..+.+ -.|.||
T Consensus 563 yttlq~lG~GAyGkV~lai~K~n~~eVViK 592 (772)
T KOG1152|consen 563 YTTLQPLGEGAYGKVNLAIHKENNYEVVIK 592 (772)
T ss_pred ceeeeeccccccceEEEeeecccceEEEee
Confidence 33355789999999999987554 455555
No 202
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=39.72 E-value=59 Score=20.72 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=5.2
Q ss_pred EeeehHHHHHHHH
Q 037933 35 VLKYVLPLIVSTV 47 (121)
Q Consensus 35 ~~~i~~~~~~~~~ 47 (121)
+++++++++++++
T Consensus 19 l~~iIi~~~llll 31 (182)
T PRK08455 19 LLIIIIGVVVLLL 31 (182)
T ss_pred eEEehHHHHHHHH
Confidence 3334444433333
No 203
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=38.91 E-value=57 Score=16.66 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=4.1
Q ss_pred eehHHHHHHH
Q 037933 37 KYVLPLIVST 46 (121)
Q Consensus 37 ~i~~~~~~~~ 46 (121)
.+.+++..++
T Consensus 5 ~~Lipvsi~l 14 (58)
T COG3197 5 YILIPVSILL 14 (58)
T ss_pred eeHHHHHHHH
Confidence 3444443333
No 204
>PHA03281 envelope glycoprotein E; Provisional
Probab=37.74 E-value=1e+02 Score=23.47 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=7.6
Q ss_pred ceeccCCcceeEEEEe
Q 037933 97 NLLGTGSFGSVYKGTI 112 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l 112 (121)
|.||...-|.-|...+
T Consensus 622 ~~~~~~~~~~~~~~~~ 637 (642)
T PHA03281 622 NAIGAECGGSGYTVYI 637 (642)
T ss_pred cccccccCCcceEEEE
Confidence 3666433344454444
No 205
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=36.78 E-value=11 Score=23.45 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=0.0
Q ss_pred EeeehHHHHHHHHHHHHHHHhhhh
Q 037933 35 VLKYVLPLIVSTVLIVITIIMYIR 58 (121)
Q Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~ 58 (121)
++.|++++++++-++..+++++.|
T Consensus 131 LVGIIVGVLlaIG~igGIIivvvR 154 (162)
T PF05808_consen 131 LVGIIVGVLLAIGFIGGIIIVVVR 154 (162)
T ss_dssp ------------------------
T ss_pred eeeehhhHHHHHHHHhheeeEEee
Confidence 444555544444444334444443
No 206
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=36.25 E-value=77 Score=19.56 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=7.2
Q ss_pred EeeehHHHHHHHHHH
Q 037933 35 VLKYVLPLIVSTVLI 49 (121)
Q Consensus 35 ~~~i~~~~~~~~~~~ 49 (121)
+..|+.++++++.++
T Consensus 63 IaGIVfgiVfimgvv 77 (155)
T PF10873_consen 63 IAGIVFGIVFIMGVV 77 (155)
T ss_pred eeeeehhhHHHHHHH
Confidence 444555555544433
No 207
>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.45 E-value=11 Score=28.65 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=20.2
Q ss_pred CCcCceeccCCcceeEEE--EeCCCCEEEeC
Q 037933 93 FNECNLLGTGSFGSVYKG--TISDGTDVAIK 121 (121)
Q Consensus 93 ~~~~~~ig~g~~g~vykg--~l~~g~~vavK 121 (121)
+..+..||+|.|..|--+ ++ -|..||||
T Consensus 20 YDLekTlG~GHFAVVKLArHVF-TGekVAVK 49 (864)
T KOG4717|consen 20 YDLEKTLGRGHFAVVKLARHVF-TGEKVAVK 49 (864)
T ss_pred ehhhhhhcCCceehhhhhhhhc-ccceeEEE
Confidence 334457999999988655 34 57788887
No 208
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=34.48 E-value=45 Score=20.46 Aligned_cols=13 Identities=15% Similarity=0.066 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhhh
Q 037933 45 STVLIVITIIMYI 57 (121)
Q Consensus 45 ~~~~~~~~~~~~~ 57 (121)
++++++++++..+
T Consensus 128 ~ll~i~~giy~~~ 140 (145)
T PF10661_consen 128 ILLAICGGIYVVL 140 (145)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344344333
No 209
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=34.12 E-value=20 Score=22.10 Aligned_cols=9 Identities=0% Similarity=-0.038 Sum_probs=3.5
Q ss_pred ehHHHHHHH
Q 037933 38 YVLPLIVST 46 (121)
Q Consensus 38 i~~~~~~~~ 46 (121)
+++++.+++
T Consensus 12 i~igi~Ll~ 20 (158)
T PF11770_consen 12 ISIGISLLL 20 (158)
T ss_pred HHHHHHHHH
Confidence 344443333
No 210
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=33.59 E-value=93 Score=17.50 Aligned_cols=6 Identities=17% Similarity=-0.518 Sum_probs=2.2
Q ss_pred ceeEEE
Q 037933 30 KIALIV 35 (121)
Q Consensus 30 ~~~~~~ 35 (121)
..+...
T Consensus 32 ~~ws~v 37 (91)
T PF01708_consen 32 LPWSRV 37 (91)
T ss_pred CcceeE
Confidence 333333
No 211
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=32.64 E-value=46 Score=17.61 Aligned_cols=6 Identities=0% Similarity=0.024 Sum_probs=2.3
Q ss_pred Hhhhhh
Q 037933 54 IMYIRC 59 (121)
Q Consensus 54 ~~~~~~ 59 (121)
+++.++
T Consensus 53 ~YFK~k 58 (68)
T PF04971_consen 53 LYFKIK 58 (68)
T ss_pred hhhhhh
Confidence 434333
No 212
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=31.61 E-value=34 Score=24.65 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=7.2
Q ss_pred eeehHHHHHHHHHHHHHHH
Q 037933 36 LKYVLPLIVSTVLIVITII 54 (121)
Q Consensus 36 ~~i~~~~~~~~~~~~~~~~ 54 (121)
+.++++.++++++++++.+
T Consensus 287 vtl~iPl~i~llL~llLs~ 305 (386)
T PF05510_consen 287 VTLAIPLIIALLLLLLLSY 305 (386)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344443333333333333
No 213
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=31.55 E-value=57 Score=23.63 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=20.5
Q ss_pred ceeccCCcceeEEEEeCCC-CEEEeC
Q 037933 97 NLLGTGSFGSVYKGTISDG-TDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l~~g-~~vavK 121 (121)
..+|.|.++.||+....+| ..+.||
T Consensus 32 ~elggGn~N~VyrV~~~~g~~svIVK 57 (401)
T PRK09550 32 REIGDGNLNLVFRVSDTEGGKSVIVK 57 (401)
T ss_pred eEcCCCceEEEEEEEeCCCCeEEEEE
Confidence 3689999999999999777 367776
No 214
>PRK14051 negative regulator GrlR; Provisional
Probab=31.49 E-value=51 Score=19.19 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=17.0
Q ss_pred CceeccCCcceeEEEEeCCCC
Q 037933 96 CNLLGTGSFGSVYKGTISDGT 116 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l~~g~ 116 (121)
.|.|--|.++.+|.|.+++..
T Consensus 28 ~nkInGGD~~~~YqG~isEd~ 48 (123)
T PRK14051 28 GNMITGGDIASVYQGVLSEDE 48 (123)
T ss_pred CCEecCCccceEEeccccccc
Confidence 467888899999999996653
No 215
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=30.87 E-value=66 Score=26.46 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=10.8
Q ss_pred EEeeehHHHHHHHHHHHHHH
Q 037933 34 IVLKYVLPLIVSTVLIVITI 53 (121)
Q Consensus 34 ~~~~i~~~~~~~~~~~~~~~ 53 (121)
.+++|++++++.++++++++
T Consensus 977 p~wiIi~svl~GLLlL~llv 996 (1030)
T KOG3637|consen 977 PLWIIILSVLGGLLLLALLV 996 (1030)
T ss_pred ceeeehHHHHHHHHHHHHHH
Confidence 35556665555555554444
No 216
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=29.88 E-value=63 Score=16.51 Aligned_cols=19 Identities=42% Similarity=0.482 Sum_probs=12.5
Q ss_pred CcceeEEEEeCCCCEEEeC
Q 037933 103 SFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 103 ~~g~vykg~l~~g~~vavK 121 (121)
....|-+..-.+|..||+|
T Consensus 52 ~i~~v~~~~~~~~~~VA~K 70 (71)
T PF08277_consen 52 SISTVQKTDSSSGNKVAFK 70 (71)
T ss_pred CEEEEEEeecCCCeEEEEE
Confidence 3444555555678888987
No 217
>PRK03427 cell division protein ZipA; Provisional
Probab=29.79 E-value=70 Score=22.63 Aligned_cols=7 Identities=14% Similarity=0.263 Sum_probs=2.6
Q ss_pred ehHHHHH
Q 037933 38 YVLPLIV 44 (121)
Q Consensus 38 i~~~~~~ 44 (121)
|++++++
T Consensus 10 ivvGAIA 16 (333)
T PRK03427 10 IIVGAIA 16 (333)
T ss_pred HHHHHHH
Confidence 3333333
No 218
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=28.00 E-value=43 Score=17.00 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=6.4
Q ss_pred EeeehHHHHHHHH
Q 037933 35 VLKYVLPLIVSTV 47 (121)
Q Consensus 35 ~~~i~~~~~~~~~ 47 (121)
+..++++.+++++
T Consensus 30 v~tVVlP~l~~~~ 42 (56)
T PF15012_consen 30 VFTVVLPTLAAVF 42 (56)
T ss_pred heeEehhHHHHHH
Confidence 3445555544443
No 219
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.68 E-value=65 Score=24.33 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=20.6
Q ss_pred CceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 96 CNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 96 ~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
...+|=|.|.+||-+-- ++.+.||+|
T Consensus 83 ~rKLGWGHFSTVWLawDtq~~r~VAlK 109 (590)
T KOG1290|consen 83 QRKLGWGHFSTVWLAWDTQNKRYVALK 109 (590)
T ss_pred EEeccccccceeEEEeeccCCeEEEEE
Confidence 45789999999998853 667788876
No 220
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=27.14 E-value=1.8e+02 Score=18.82 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=6.1
Q ss_pred ehHHHHHHHHHHHHHH
Q 037933 38 YVLPLIVSTVLIVITI 53 (121)
Q Consensus 38 i~~~~~~~~~~~~~~~ 53 (121)
-.+++..+++++++++
T Consensus 183 n~lgiG~v~I~~l~~~ 198 (209)
T PF11353_consen 183 NPLGIGTVLIVLLILL 198 (209)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3344443333333333
No 221
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=26.97 E-value=75 Score=29.30 Aligned_cols=6 Identities=17% Similarity=-0.069 Sum_probs=2.5
Q ss_pred Hhhhhh
Q 037933 54 IMYIRC 59 (121)
Q Consensus 54 ~~~~~~ 59 (121)
+++||+
T Consensus 4012 f~~crK 4017 (4289)
T KOG1219|consen 4012 FWKCRK 4017 (4289)
T ss_pred HHhhhh
Confidence 344443
No 222
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=26.69 E-value=67 Score=23.67 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=21.8
Q ss_pred ceeccCCcceeEEEEeCCCCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTISDGTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l~~g~~vavK 121 (121)
..|.-|.-..||.+.-.+|..+|||
T Consensus 150 GCiSTGKEANVYHat~~dG~~~AIK 174 (520)
T KOG2270|consen 150 GCISTGKEANVYHATEEDGSEFAIK 174 (520)
T ss_pred cccccCccceeEeeecCCCceEEEE
Confidence 3677889999999999999999987
No 223
>KOG3482 consensus Small nuclear ribonucleoprotein (snRNP) SMF [RNA processing and modification]
Probab=25.66 E-value=68 Score=17.19 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=11.5
Q ss_pred eeccCCcceeEEEEe
Q 037933 98 LLGTGSFGSVYKGTI 112 (121)
Q Consensus 98 ~ig~g~~g~vykg~l 112 (121)
++-+=.+|..|||.|
T Consensus 21 V~vkLKwg~eYkG~L 35 (79)
T KOG3482|consen 21 VLVKLKWGQEYKGTL 35 (79)
T ss_pred EEEEEecCcEEEEEE
Confidence 455567789999987
No 224
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=25.31 E-value=1.9e+02 Score=21.05 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=6.9
Q ss_pred EeeehHHHHHHHHHHH
Q 037933 35 VLKYVLPLIVSTVLIV 50 (121)
Q Consensus 35 ~~~i~~~~~~~~~~~~ 50 (121)
+++..++.+..++++.
T Consensus 16 vlwgsLaav~~f~lis 31 (428)
T PF15347_consen 16 VLWGSLAAVTTFLLIS 31 (428)
T ss_pred EeehHHHHHHHHHHHH
Confidence 3444444444444433
No 225
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.50 E-value=1.2e+02 Score=18.73 Aligned_cols=8 Identities=13% Similarity=0.281 Sum_probs=4.7
Q ss_pred ceeEEEEe
Q 037933 105 GSVYKGTI 112 (121)
Q Consensus 105 g~vykg~l 112 (121)
+.-|+..+
T Consensus 116 ~~yYrV~~ 123 (149)
T PF11694_consen 116 DKYYRVIF 123 (149)
T ss_pred CccEEEEE
Confidence 34566666
No 226
>PTZ00045 apical membrane antigen 1; Provisional
Probab=23.78 E-value=1.2e+02 Score=23.34 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=6.0
Q ss_pred EeeehHHHHHHHHH
Q 037933 35 VLKYVLPLIVSTVL 48 (121)
Q Consensus 35 ~~~i~~~~~~~~~~ 48 (121)
++++++++.+++++
T Consensus 515 ~~i~iia~~~~~~~ 528 (595)
T PTZ00045 515 ILIIIIAATGAVVL 528 (595)
T ss_pred eehhHHHHHHHHHH
Confidence 44444444444433
No 227
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=23.52 E-value=48 Score=17.94 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=15.5
Q ss_pred eccCCcceeEEEEeCCCCEEE
Q 037933 99 LGTGSFGSVYKGTISDGTDVA 119 (121)
Q Consensus 99 ig~g~~g~vykg~l~~g~~va 119 (121)
.|+=.|+-||.|.+..++.+.
T Consensus 17 ~G~la~~RV~sG~l~~g~~v~ 37 (85)
T cd03690 17 GERLAYLRLYSGTLRLRDSVR 37 (85)
T ss_pred CCeEEEEEEccCEEcCCCEEE
Confidence 455567889999998877663
No 228
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.17 E-value=46 Score=23.85 Aligned_cols=30 Identities=37% Similarity=0.552 Sum_probs=18.8
Q ss_pred cCCcCceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 92 EFNECNLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 92 ~~~~~~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
+|.--.++|+|.||.|.-..= ..+...|+|
T Consensus 169 dFdfLKvLGkGTFGKVIL~rEKat~k~YAiK 199 (516)
T KOG0690|consen 169 DFDFLKVLGKGTFGKVILCREKATGKLYAIK 199 (516)
T ss_pred hhhHHHHhcCCccceEEEEeecccCceeehh
Confidence 354455899999999875432 234445544
No 229
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=22.78 E-value=53 Score=23.78 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=18.1
Q ss_pred ceeccCCcceeEEEEe-CCCCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTI-SDGTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l-~~g~~vavK 121 (121)
..+|+|.||.|.+-.- ..+..||+|
T Consensus 95 ~~lGeGtFGkV~ec~D~~~~~~vAlK 120 (415)
T KOG0671|consen 95 DLLGEGTFGKVVECWDRETKEHVALK 120 (415)
T ss_pred hhhcCCcccceEEEeecCCCceehHH
Confidence 3689999999987543 225677776
No 230
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=22.54 E-value=2.6e+02 Score=22.09 Aligned_cols=12 Identities=25% Similarity=0.213 Sum_probs=5.7
Q ss_pred ccccccCHHHHH
Q 037933 76 ATWRRTSYLDIQ 87 (121)
Q Consensus 76 ~~~~~~~~~~l~ 87 (121)
...++++-+|-.
T Consensus 41 ~~~RKLt~eEr~ 52 (705)
T PF07095_consen 41 PTHRKLTAEERQ 52 (705)
T ss_pred CCCCCCCHHHHH
Confidence 344555555533
No 231
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=22.22 E-value=73 Score=17.48 Aligned_cols=7 Identities=29% Similarity=0.615 Sum_probs=3.9
Q ss_pred CccccCC
Q 037933 6 NYALCGP 12 (121)
Q Consensus 6 N~~lc~~ 12 (121)
+|++|..
T Consensus 20 ~p~~~~~ 26 (84)
T PF09716_consen 20 TPCLCNN 26 (84)
T ss_pred cCccccc
Confidence 4566654
No 232
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=21.80 E-value=64 Score=18.38 Aligned_cols=9 Identities=44% Similarity=0.534 Sum_probs=4.2
Q ss_pred CCcceeEEE
Q 037933 102 GSFGSVYKG 110 (121)
Q Consensus 102 g~~g~vykg 110 (121)
|-+|+|-+.
T Consensus 55 Gi~G~V~~v 63 (97)
T COG1862 55 GIVGTVTKV 63 (97)
T ss_pred CeEEEEEEE
Confidence 344555443
No 233
>PRK04335 cell division protein ZipA; Provisional
Probab=21.41 E-value=1.1e+02 Score=21.42 Aligned_cols=8 Identities=13% Similarity=0.177 Sum_probs=3.1
Q ss_pred eeehHHHH
Q 037933 36 LKYVLPLI 43 (121)
Q Consensus 36 ~~i~~~~~ 43 (121)
+.|+++++
T Consensus 7 vLiivGAl 14 (313)
T PRK04335 7 VLIVVGAL 14 (313)
T ss_pred hHHHHHHH
Confidence 33444433
No 234
>PRK12396 5-methylribose kinase; Reviewed
Probab=21.07 E-value=1.2e+02 Score=22.24 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=19.7
Q ss_pred ceeccCCcceeEEEEeCC-CCEEEeC
Q 037933 97 NLLGTGSFGSVYKGTISD-GTDVAIK 121 (121)
Q Consensus 97 ~~ig~g~~g~vykg~l~~-g~~vavK 121 (121)
..||.|....||++..+. +..|.||
T Consensus 35 ~eigdGnlN~VfrV~~~~~~~svIVK 60 (409)
T PRK12396 35 KEIGDGNLNYVFRVWDEQKNISVIVK 60 (409)
T ss_pred eEcCCCceEEEEEEeeCCCCceEEEE
Confidence 478999999999999843 4567776
Done!