Query 037934
Match_columns 141
No_of_seqs 129 out of 404
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 09:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wff_A Riken cDNA 2810002D23 p 99.8 3.5E-21 1.2E-25 136.1 -0.1 51 85-135 20-83 (85)
2 2kzy_A ZNF216-A20, zfand5 prot 99.7 1.2E-17 4.2E-22 111.8 4.5 37 2-38 12-48 (62)
3 2c7n_A Rabex-5, GEF 1, RAB gua 99.6 8.8E-17 3E-21 110.7 2.8 32 2-33 15-46 (74)
4 1wfh_A Zinc finger (AN1-like) 99.6 2.3E-17 8E-22 111.1 -1.1 42 85-126 10-63 (64)
5 1wfl_A Zinc finger protein 216 99.6 2.2E-16 7.7E-21 108.9 2.0 35 84-118 19-53 (74)
6 1wg2_A Zinc finger (AN1-like) 99.6 6.6E-17 2.3E-21 108.9 -0.7 42 84-125 9-62 (64)
7 3oj3_I Tumor necrosis factor a 99.6 3.4E-16 1.2E-20 100.1 2.6 28 4-31 19-47 (49)
8 1wfp_A Zinc finger (AN1-like) 99.5 7.4E-16 2.5E-20 106.4 0.4 35 84-118 19-53 (74)
9 1x4w_A Hypothetical protein FL 99.5 9.8E-16 3.3E-20 104.0 -1.4 35 84-118 9-46 (67)
10 1x4v_A Hypothetical protein LO 98.5 3.1E-08 1.1E-12 66.2 2.4 32 86-118 8-42 (63)
11 1wfe_A Riken cDNA 2310008M20 p 98.5 6E-09 2E-13 73.3 -1.2 54 86-141 21-82 (86)
12 1wys_A Riken cDNA 2310008M20 p 98.0 1.3E-06 4.5E-11 60.1 1.5 29 89-118 13-44 (75)
13 2eqe_A Tumor necrosis factor, 97.9 6E-06 2E-10 52.2 3.0 29 3-31 15-44 (48)
14 1vfy_A Phosphatidylinositol-3- 84.0 0.5 1.7E-05 31.0 1.9 28 91-118 12-42 (73)
15 2eqf_A Tumor necrosis factor, 82.2 0.63 2.1E-05 28.8 1.7 24 6-29 13-36 (46)
16 2yw8_A RUN and FYVE domain-con 81.2 0.88 3E-05 30.4 2.3 29 90-118 19-50 (82)
17 1joc_A EEA1, early endosomal a 80.8 0.84 2.9E-05 33.0 2.3 29 90-118 69-100 (125)
18 2vrw_B P95VAV, VAV1, proto-onc 79.7 0.84 2.9E-05 37.7 2.2 30 88-117 355-388 (406)
19 1wfk_A Zinc finger, FYVE domai 79.5 1.2 4E-05 30.4 2.5 30 89-118 8-40 (88)
20 1z2q_A LM5-1; membrane protein 77.8 1.3 4.6E-05 29.6 2.4 29 90-118 21-52 (84)
21 1dvp_A HRS, hepatocyte growth 77.7 0.92 3.2E-05 35.1 1.8 28 91-118 162-192 (220)
22 1x4u_A Zinc finger, FYVE domai 77.5 1.4 4.9E-05 29.4 2.5 29 90-118 14-45 (84)
23 3t7l_A Zinc finger FYVE domain 75.5 1.7 5.7E-05 29.6 2.4 29 90-118 20-51 (90)
24 3zyq_A Hepatocyte growth facto 74.1 1.7 5.8E-05 34.0 2.4 29 90-118 164-195 (226)
25 2eqg_A Tumor necrosis factor, 72.8 2.7 9.1E-05 26.2 2.6 27 5-31 13-40 (49)
26 1ef4_A Subunit N, DNA-directed 72.4 1 3.6E-05 29.0 0.7 14 89-102 2-15 (55)
27 1twf_J DNA-directed RNA polyme 70.2 1.4 4.9E-05 29.6 1.0 14 89-102 3-16 (70)
28 1y02_A CARP2, FYVE-ring finger 69.6 2.1 7.3E-05 31.0 1.9 28 90-117 19-49 (120)
29 4b6d_A RAC GTPase-activating p 66.1 1.8 6.2E-05 27.7 0.8 20 89-108 18-39 (61)
30 4ayb_N DNA-directed RNA polyme 64.0 1.9 6.7E-05 28.6 0.7 14 89-102 3-16 (66)
31 1ptq_A Protein kinase C delta 54.5 6.8 0.00023 23.0 1.9 23 89-111 10-36 (50)
32 2co8_A NEDD9 interacting prote 52.4 6 0.00021 25.6 1.5 28 91-118 43-72 (82)
33 3f6q_B LIM and senescent cell 51.1 6.1 0.00021 24.1 1.3 28 91-118 40-67 (72)
34 3mpx_A FYVE, rhogef and PH dom 50.9 3.2 0.00011 34.2 0.0 29 90-118 375-406 (434)
35 2yuu_A NPKC-delta, protein kin 48.4 8.6 0.00029 25.4 1.8 24 89-112 27-54 (83)
36 2d8x_A Protein pinch; LIM doma 46.4 8 0.00027 23.8 1.4 28 91-118 32-59 (70)
37 3ky9_A Proto-oncogene VAV; cal 45.8 10 0.00035 33.0 2.4 30 89-118 528-561 (587)
38 1wd2_A Ariadne-1 protein homol 45.3 9.1 0.00031 24.2 1.5 28 89-116 5-39 (60)
39 2fnf_X Putative RAS effector N 45.0 10 0.00034 24.7 1.7 25 88-112 33-58 (72)
40 2enz_A NPKC-theta, protein kin 42.8 14 0.00046 23.2 2.0 23 89-111 22-48 (65)
41 1z60_A TFIIH basal transcripti 42.0 8.2 0.00028 24.8 0.9 24 92-115 17-42 (59)
42 2ysj_A Tripartite motif-contai 42.0 21 0.00071 21.3 2.8 26 90-116 20-45 (63)
43 1nyp_A Pinch protein; LIM doma 41.8 10 0.00036 23.0 1.3 28 91-118 32-59 (66)
44 1x64_A Alpha-actinin-2 associa 41.6 10 0.00034 24.7 1.3 28 91-118 52-79 (89)
45 1faq_A RAF-1; transferase, ser 40.5 9.6 0.00033 22.6 1.0 22 89-111 13-35 (52)
46 1x61_A Thyroid receptor intera 40.1 12 0.00041 23.0 1.4 28 91-118 34-61 (72)
47 1g47_A Pinch protein; LIM doma 39.7 11 0.00038 23.4 1.3 28 91-118 40-67 (77)
48 1x68_A FHL5 protein; four-and- 39.6 13 0.00045 23.3 1.6 28 91-118 36-63 (76)
49 2d8t_A Dactylidin, ring finger 39.4 18 0.0006 22.3 2.2 25 90-115 15-39 (71)
50 1rfh_A RAS association (ralgds 39.3 9.9 0.00034 23.6 0.9 24 88-111 20-44 (59)
51 3uej_A NPKC-delta, protein kin 38.9 16 0.00055 22.8 1.9 20 89-108 19-41 (65)
52 1x4l_A Skeletal muscle LIM-pro 38.3 13 0.00046 22.8 1.5 28 91-118 36-63 (72)
53 3h0g_L DNA-directed RNA polyme 38.1 14 0.00048 24.0 1.6 21 88-108 19-42 (63)
54 1x4k_A Skeletal muscle LIM-pro 36.8 14 0.00047 22.7 1.3 28 91-118 34-61 (72)
55 2ysl_A Tripartite motif-contai 36.5 26 0.00089 21.3 2.6 26 90-116 20-45 (73)
56 1wyh_A SLIM 2, skeletal muscle 35.2 15 0.00051 22.5 1.3 28 91-118 34-61 (72)
57 1x62_A C-terminal LIM domain p 35.1 9.6 0.00033 24.2 0.4 28 91-118 42-69 (79)
58 1y8f_A UNC-13 homolog A, MUNC1 34.9 19 0.00064 22.6 1.8 24 89-112 23-50 (66)
59 1x63_A Skeletal muscle LIM-pro 34.1 16 0.00054 23.1 1.3 28 91-118 44-71 (82)
60 2d8z_A Four and A half LIM dom 34.1 17 0.00058 22.2 1.4 28 91-118 32-59 (70)
61 2dar_A PDZ and LIM domain prot 34.1 17 0.00059 23.5 1.5 28 91-118 52-79 (90)
62 2jr7_A DPH3 homolog; DESR1, CS 33.7 11 0.00037 26.2 0.5 14 101-114 20-33 (89)
63 1yop_A KTI11P; zinc finger, me 33.2 10 0.00036 25.9 0.3 13 102-114 21-33 (83)
64 2d8y_A Eplin protein; LIM doma 32.9 16 0.00054 23.8 1.2 28 91-118 43-70 (91)
65 1a7i_A QCRP2 (LIM1); LIM domai 32.8 15 0.00052 23.2 1.1 28 91-118 35-62 (81)
66 1e4u_A Transcriptional repress 32.1 11 0.00037 24.6 0.3 26 90-115 11-39 (78)
67 2enn_A NPKC-theta, protein kin 31.4 17 0.00057 23.7 1.1 23 89-111 33-59 (77)
68 3j21_g 50S ribosomal protein L 31.1 14 0.00049 23.0 0.7 24 89-112 13-37 (51)
69 1wge_A Hypothetical protein 26 30.7 13 0.00044 25.4 0.4 14 101-114 27-40 (83)
70 2eli_A Protein kinase C alpha 30.7 24 0.00081 23.3 1.8 24 89-112 27-54 (85)
71 2cu8_A Cysteine-rich protein 2 29.9 23 0.00079 22.0 1.6 28 91-118 37-65 (76)
72 2ct2_A Tripartite motif protei 29.6 37 0.0013 21.2 2.6 27 90-116 15-44 (88)
73 2ecj_A Tripartite motif-contai 29.3 41 0.0014 19.3 2.6 26 90-116 15-40 (58)
74 2ehe_A Four and A half LIM dom 29.1 25 0.00085 22.1 1.6 28 91-118 44-71 (82)
75 2egq_A FHL1 protein; LIM domai 27.6 23 0.00078 22.0 1.2 27 91-117 47-73 (77)
76 1x3h_A Leupaxin; paxillin fami 27.6 25 0.00086 21.9 1.4 28 91-118 42-69 (80)
77 1r79_A Diacylglycerol kinase, 25.7 31 0.0011 23.3 1.7 19 90-108 38-60 (84)
78 2ecv_A Tripartite motif-contai 25.6 56 0.0019 20.0 2.8 27 90-117 19-45 (85)
79 2ea6_A Ring finger protein 4; 24.9 32 0.0011 20.4 1.5 27 90-116 15-47 (69)
80 2cur_A Skeletal muscle LIM-pro 24.6 31 0.0011 20.9 1.5 28 91-118 32-59 (69)
81 2l4z_A DNA endonuclease RBBP8, 24.5 28 0.00095 24.3 1.3 26 92-117 90-117 (123)
82 2yur_A Retinoblastoma-binding 24.2 51 0.0017 20.4 2.4 26 90-116 15-41 (74)
83 1iml_A CRIP, cysteine rich int 23.8 35 0.0012 21.1 1.6 28 91-118 28-56 (76)
84 2csy_A Zinc finger protein 183 23.2 52 0.0018 20.5 2.3 25 90-115 15-39 (81)
85 2ayj_A 50S ribosomal protein L 22.9 22 0.00075 22.8 0.4 23 89-111 18-41 (56)
86 1jm7_B BARD1, BRCA1-associated 22.5 35 0.0012 23.1 1.5 27 90-116 22-48 (117)
87 1j2o_A FLIN2, fusion of rhombo 21.2 36 0.0012 23.1 1.3 28 91-118 31-60 (114)
88 2cuq_A Four and A half LIM dom 21.0 41 0.0014 20.9 1.5 28 91-118 42-69 (80)
89 2xqn_T Testin, TESS; metal-bin 20.8 37 0.0013 23.1 1.3 28 91-118 31-58 (126)
90 2cup_A Skeletal muscle LIM-pro 20.7 38 0.0013 22.0 1.3 28 91-118 34-61 (101)
91 2ecw_A Tripartite motif-contai 20.5 78 0.0027 19.3 2.8 26 90-116 19-44 (85)
92 2ecy_A TNF receptor-associated 20.3 51 0.0017 19.7 1.8 26 90-116 15-40 (66)
93 2djb_A Polycomb group ring fin 20.3 63 0.0022 19.7 2.3 26 90-116 15-41 (72)
No 1
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.80 E-value=3.5e-21 Score=136.12 Aligned_cols=51 Identities=37% Similarity=0.797 Sum_probs=47.4
Q ss_pred cCccccCcccccccccccc-ceeeecCCcccchhh------------HhhHHHHHHhCCceecc
Q 037934 85 TTSALEKRCEICDKKVGSI-ELKCRCGHLYCGTHR------------KFDRETLVEDNPLIRAD 135 (141)
Q Consensus 85 ~~~~~~~rC~~C~kkvgl~-gf~CRCg~~fC~~HR------------~~~r~~lak~NP~v~~~ 135 (141)
.+++.++||+.|+|||||+ +|+||||++||+.|| ++||++|+|+||+|++|
T Consensus 20 ~~k~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~HRy~e~H~C~fDyK~~gr~~iak~NPvV~a~ 83 (85)
T 1wff_A 20 TKKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPVSGPS 83 (85)
T ss_dssp CCCCCCCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCSSSCCCCCCCCCCCCCTT
T ss_pred cCcccCccchhhCCeecccCCeEcCCCCEecccCCCccCCCCcchhhHHHHHHHHHHCCeecCC
Confidence 3456789999999999995 999999999999999 99999999999999986
No 2
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=99.69 E-value=1.2e-17 Score=111.77 Aligned_cols=37 Identities=46% Similarity=1.079 Sum_probs=32.4
Q ss_pred CccccccCCCCCCcccCCCCchhhhhHHHhhhhcccc
Q 037934 2 TPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGV 38 (141)
Q Consensus 2 ~p~lC~ngCGFfGs~at~n~CSkCyr~~~~~~~~~~~ 38 (141)
.|+||+|||||||||+|+|||||||||.+.+++++..
T Consensus 12 ~~~lC~ngCGFfGnpaT~nlCSkCyr~~~~~~~~~~~ 48 (62)
T 2kzy_A 12 GPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGR 48 (62)
T ss_dssp CCCBCTTCCSSBCCTTTTSCCHHHHHHHHHHHHHHCC
T ss_pred cccchhhCCCCcCChhhcCcCHHHHHHHHHhhhcccc
Confidence 4789999999999999999999999999877665433
No 3
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=99.63 E-value=8.8e-17 Score=110.72 Aligned_cols=32 Identities=34% Similarity=0.986 Sum_probs=26.8
Q ss_pred CccccccCCCCCCcccCCCCchhhhhHHHhhh
Q 037934 2 TPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQ 33 (141)
Q Consensus 2 ~p~lC~ngCGFfGs~at~n~CSkCyr~~~~~~ 33 (141)
.|.||+|||||||||+|+|||||||++...++
T Consensus 15 ~~~lC~ngCGFfGnpaT~nlCSkCyrd~~~k~ 46 (74)
T 2c7n_A 15 SDLLCKKGCGYYGNPAWQGFCSKCWREEYHKA 46 (74)
T ss_dssp ---CCTTCSSSCCCGGGTTCCHHHHHHHHHHH
T ss_pred cchhHHhCCCCCCChhhcCccHHHHHHHHHHH
Confidence 46799999999999999999999999986443
No 4
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.61 E-value=2.3e-17 Score=111.10 Aligned_cols=42 Identities=33% Similarity=0.835 Sum_probs=37.5
Q ss_pred cCccccCccccccccccccceeeecCCcccchhh------------HhhHHHHH
Q 037934 85 TTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR------------KFDRETLV 126 (141)
Q Consensus 85 ~~~~~~~rC~~C~kkvgl~gf~CRCg~~fC~~HR------------~~~r~~la 126 (141)
+++..++||+.|+|||||++|+||||++||+.|| ++||++||
T Consensus 10 ~~k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~l~ 63 (64)
T 1wfh_A 10 SPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGSGPSS 63 (64)
T ss_dssp CCCSSCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCSCCCCSCCC
T ss_pred CCCCcCCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhhHHHHHHhc
Confidence 4456789999999999999999999999999999 78887764
No 5
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.59 E-value=2.2e-16 Score=108.95 Aligned_cols=35 Identities=46% Similarity=1.083 Sum_probs=31.8
Q ss_pred ccCccccCccccccccccccceeeecCCcccchhh
Q 037934 84 KTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 84 ~~~~~~~~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
.+.+..+|||+.|+|||||++|.||||++||+.||
T Consensus 19 ~~~k~~~nRC~~CrKkvgL~gf~CrCg~~FCs~HR 53 (74)
T 1wfl_A 19 ELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHR 53 (74)
T ss_dssp CCCCSCTTBCSSSCCBCGGGCEECTTSCEECSSSC
T ss_pred ccCCCcCCcChhhCCcccccCeecCCCCEechhcC
Confidence 34455689999999999999999999999999999
No 6
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.59 E-value=6.6e-17 Score=108.91 Aligned_cols=42 Identities=36% Similarity=0.864 Sum_probs=36.7
Q ss_pred ccCccccCccccccccccccceeeecCCcccchhh------------HhhHHHH
Q 037934 84 KTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR------------KFDRETL 125 (141)
Q Consensus 84 ~~~~~~~~rC~~C~kkvgl~gf~CRCg~~fC~~HR------------~~~r~~l 125 (141)
.+++..++||+.|+|||||++|+||||++||+.|| ++||++|
T Consensus 9 ~~~~~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~~gr~~~ 62 (64)
T 1wg2_A 9 SRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGSGPS 62 (64)
T ss_dssp SCCSCCSCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSCSCCCSC
T ss_pred CCCCCcCCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhHHhHHHh
Confidence 34555789999999999999999999999999999 7777665
No 7
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=99.59 E-value=3.4e-16 Score=100.09 Aligned_cols=28 Identities=36% Similarity=1.019 Sum_probs=26.5
Q ss_pred cccc-cCCCCCCcccCCCCchhhhhHHHh
Q 037934 4 PLCT-KGCGFYGTKEHKSMCSNCYNDFLE 31 (141)
Q Consensus 4 ~lC~-ngCGFfGs~at~n~CSkCyr~~~~ 31 (141)
.||+ |||||||||+|+|||||||||++.
T Consensus 19 ~lC~~ngCGFfG~p~t~n~CSkCyre~~e 47 (49)
T 3oj3_I 19 SKCRKAGCVYFGTPENKGFCTLCFIEYRE 47 (49)
T ss_dssp CBCSSTTCSSBCBGGGTTBCHHHHHHHHH
T ss_pred cccccCCCCCccCcccCCcchHHHHHHHH
Confidence 6999 999999999999999999999875
No 8
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.53 E-value=7.4e-16 Score=106.36 Aligned_cols=35 Identities=49% Similarity=1.088 Sum_probs=32.2
Q ss_pred ccCccccCccccccccccccceeeecCCcccchhh
Q 037934 84 KTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 84 ~~~~~~~~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
.+++..++||+.|+|+|||++|+||||++||+.||
T Consensus 19 ~~~k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~HR 53 (74)
T 1wfp_A 19 DPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHR 53 (74)
T ss_dssp CCTTCCCCBCSSSCCBCTTTCEECTTSCEECTTTC
T ss_pred ccCcccCccchhhcCcccccceEeccCCEeccccC
Confidence 34566789999999999999999999999999999
No 9
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=9.8e-16 Score=104.01 Aligned_cols=35 Identities=31% Similarity=0.828 Sum_probs=31.4
Q ss_pred ccCccccCccccccccccccc---eeeecCCcccchhh
Q 037934 84 KTTSALEKRCEICDKKVGSIE---LKCRCGHLYCGTHR 118 (141)
Q Consensus 84 ~~~~~~~~rC~~C~kkvgl~g---f~CRCg~~fC~~HR 118 (141)
.++++.++||+.|+|||||++ |+||||++||+.||
T Consensus 9 ~~~~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~HR 46 (67)
T 1x4w_A 9 RSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHR 46 (67)
T ss_dssp CCSCSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTTTC
T ss_pred ccCCccCCcchhhCCeecccccCceEecCCCEehhccC
Confidence 345667899999999999994 99999999999999
No 10
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=3.1e-08 Score=66.20 Aligned_cols=32 Identities=28% Similarity=0.859 Sum_probs=29.3
Q ss_pred CccccCcccc--ccccccccceeee-cCCcccchhh
Q 037934 86 TSALEKRCEI--CDKKVGSIELKCR-CGHLYCGTHR 118 (141)
Q Consensus 86 ~~~~~~rC~~--C~kkvgl~gf~CR-Cg~~fC~~HR 118 (141)
.+...+||.. |+++ +|++|.|+ |+.+||..||
T Consensus 8 ~k~~~~~Cs~~~Ck~~-~ll~f~C~~C~~~FC~~HR 42 (63)
T 1x4v_A 8 RKIFTNKCERAGCRQR-EMMKLTCERCSRNFCIKHR 42 (63)
T ss_dssp CCTTCCCCCSTTCCCC-CSSCCBCSSSCCBCCHHHH
T ss_pred CcccCCCCCccCCCCC-CccceECCCCCcccCcccC
Confidence 4456899999 9999 99999999 9999999999
No 11
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=98.53 E-value=6e-09 Score=73.34 Aligned_cols=54 Identities=13% Similarity=0.345 Sum_probs=40.7
Q ss_pred CccccCcccc--ccccccccceeee-cCCcccchhh-----HhhHHHHHHhCCceeccccccCC
Q 037934 86 TSALEKRCEI--CDKKVGSIELKCR-CGHLYCGTHR-----KFDRETLVEDNPLIRADKLEGRI 141 (141)
Q Consensus 86 ~~~~~~rC~~--C~kkvgl~gf~CR-Cg~~fC~~HR-----~~~r~~lak~NP~v~~~Ki~~KI 141 (141)
.+..++||+. |+++ +|++|.|+ |+.+||..|| .=....+.+.++...+.++. +|
T Consensus 21 ~~~~~~~C~~~~Ck~~-~~l~f~C~~C~~~FC~~HR~~e~H~C~~~~~~k~~~~~~~~l~~-~~ 82 (86)
T 1wfe_A 21 DEHKSYSCSFKGCTDV-ELVAVICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMAATQKLVR-SG 82 (86)
T ss_dssp SCSCCEECCSTTCCCE-ESSCEECTTTCCEECGGGCSTGGGTCSSSSCCCSSCCCCCCCSS-CS
T ss_pred cCCCCCCCCCcCCCCC-CccceECCCCCcccccccCCccCCCCCCCcccccchHHHHHHHH-HH
Confidence 4456799998 9999 88999999 9999999999 11112346677777776666 54
No 12
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=98.03 E-value=1.3e-06 Score=60.06 Aligned_cols=29 Identities=24% Similarity=0.953 Sum_probs=27.1
Q ss_pred ccCcccc--ccccccccceeee-cCCcccchhh
Q 037934 89 LEKRCEI--CDKKVGSIELKCR-CGHLYCGTHR 118 (141)
Q Consensus 89 ~~~rC~~--C~kkvgl~gf~CR-Cg~~fC~~HR 118 (141)
..+||.. |+++ +|+.|+|+ |+.+||..||
T Consensus 13 ~g~~Cs~~~C~~~-dflpf~C~~C~~~FC~~HR 44 (75)
T 1wys_A 13 IGQHCQVQHCRQR-DFLPFVCDGCSGIFCLEHR 44 (75)
T ss_dssp CCCCCSCTTTCCC-SCCCEECTTTCCEECSTTC
T ss_pred cCCCcCcccCCCc-cceeeECcccCcCcCcccC
Confidence 3589998 9998 89999999 9999999999
No 13
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=97.92 E-value=6e-06 Score=52.15 Aligned_cols=29 Identities=31% Similarity=0.936 Sum_probs=25.9
Q ss_pred ccccc-cCCCCCCcccCCCCchhhhhHHHh
Q 037934 3 PPLCT-KGCGFYGTKEHKSMCSNCYNDFLE 31 (141)
Q Consensus 3 p~lC~-ngCGFfGs~at~n~CSkCyr~~~~ 31 (141)
...|. .||-|||+|.+.++|..||.++..
T Consensus 15 t~kCRk~GC~fFGTpen~GFCTlCf~eyre 44 (48)
T 2eqe_A 15 TSKCRKAGCVYFGTPENKGFCTLCFIEYSG 44 (48)
T ss_dssp SSBCSSTTCCSBCCTTTTTCCHHHHHHHHS
T ss_pred cchhhhcCCCcccCcccCceeeeehhhhhc
Confidence 35796 899999999999999999999854
No 14
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=83.98 E-value=0.5 Score=30.99 Aligned_cols=28 Identities=39% Similarity=1.057 Sum_probs=23.6
Q ss_pred Ccccccccccccc--ceeee-cCCcccchhh
Q 037934 91 KRCEICDKKVGSI--ELKCR-CGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR 118 (141)
..|..|+++.+|+ --.|| ||.+||+.+-
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs 42 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHS 42 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGS
T ss_pred CcccCCCCccCCccccccCCCCCEEEccccc
Confidence 4899999999985 56776 9999999874
No 15
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=82.16 E-value=0.63 Score=28.76 Aligned_cols=24 Identities=17% Similarity=0.629 Sum_probs=21.6
Q ss_pred cccCCCCCCcccCCCCchhhhhHH
Q 037934 6 CTKGCGFYGTKEHKSMCSNCYNDF 29 (141)
Q Consensus 6 C~ngCGFfGs~at~n~CSkCyr~~ 29 (141)
++-+|.-|||..-+++|.-||.-.
T Consensus 13 ~apgCdhygN~kc~GyCNeC~~fK 36 (46)
T 2eqf_A 13 RAPACDHFGNAKCNGYCNECFQFK 36 (46)
T ss_dssp SSTTCCSCCBGGGTBSCHHHHHHH
T ss_pred cCcccccccchhhhhhhHHHHhhH
Confidence 478999999999999999999754
No 16
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=81.25 E-value=0.88 Score=30.42 Aligned_cols=29 Identities=34% Similarity=1.001 Sum_probs=23.9
Q ss_pred cCcccccccccccc--ceeee-cCCcccchhh
Q 037934 90 EKRCEICDKKVGSI--ELKCR-CGHLYCGTHR 118 (141)
Q Consensus 90 ~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR 118 (141)
...|..|.++.+|+ --.|| ||.+||+.+-
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs 50 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCS 50 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGG
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHh
Confidence 45899999999985 46776 8999999864
No 17
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=80.80 E-value=0.84 Score=33.00 Aligned_cols=29 Identities=28% Similarity=0.851 Sum_probs=24.0
Q ss_pred cCcccccccccccc--ceeee-cCCcccchhh
Q 037934 90 EKRCEICDKKVGSI--ELKCR-CGHLYCGTHR 118 (141)
Q Consensus 90 ~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR 118 (141)
...|..|.++.+++ -..|| ||.+||+.+-
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs 100 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECS 100 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGS
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHh
Confidence 46899999999985 46786 8999998764
No 18
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=79.71 E-value=0.84 Score=37.69 Aligned_cols=30 Identities=17% Similarity=0.432 Sum_probs=25.4
Q ss_pred cccCccccccccc-cc--cceeee-cCCcccchh
Q 037934 88 ALEKRCEICDKKV-GS--IELKCR-CGHLYCGTH 117 (141)
Q Consensus 88 ~~~~rC~~C~kkv-gl--~gf~CR-Cg~~fC~~H 117 (141)
..+..|..|++.+ || .|+.|| ||.++|..-
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C 388 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKEC 388 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhh
Confidence 3578999999998 77 699999 999998754
No 19
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=79.45 E-value=1.2 Score=30.41 Aligned_cols=30 Identities=33% Similarity=0.808 Sum_probs=24.2
Q ss_pred ccCcccccccccccc--ceeee-cCCcccchhh
Q 037934 89 LEKRCEICDKKVGSI--ELKCR-CGHLYCGTHR 118 (141)
Q Consensus 89 ~~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR 118 (141)
....|..|.++.+|+ --.|| ||.+||+.+-
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 40 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCL 40 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTS
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHc
Confidence 346899999999986 46676 8999998864
No 20
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=77.85 E-value=1.3 Score=29.63 Aligned_cols=29 Identities=28% Similarity=0.728 Sum_probs=23.8
Q ss_pred cCcccccccccccc--ceeee-cCCcccchhh
Q 037934 90 EKRCEICDKKVGSI--ELKCR-CGHLYCGTHR 118 (141)
Q Consensus 90 ~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR 118 (141)
...|..|.++.+|+ --.|| ||.+||+.+-
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs 52 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCS 52 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGG
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHh
Confidence 46899999999986 46676 8999998763
No 21
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=77.68 E-value=0.92 Score=35.10 Aligned_cols=28 Identities=29% Similarity=0.897 Sum_probs=23.9
Q ss_pred Ccccccccccccc--ceeee-cCCcccchhh
Q 037934 91 KRCEICDKKVGSI--ELKCR-CGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR 118 (141)
..|..|+++.+++ --.|| ||.+||+.+-
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs 192 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCT 192 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTS
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHh
Confidence 6999999999985 57787 8999999864
No 22
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.47 E-value=1.4 Score=29.40 Aligned_cols=29 Identities=21% Similarity=0.647 Sum_probs=23.9
Q ss_pred cCcccccccccccc--ceeee-cCCcccchhh
Q 037934 90 EKRCEICDKKVGSI--ELKCR-CGHLYCGTHR 118 (141)
Q Consensus 90 ~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR 118 (141)
...|..|.++.+|+ --.|| ||.+||+..-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 46899999999986 46676 8999999764
No 23
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.47 E-value=1.7 Score=29.63 Aligned_cols=29 Identities=31% Similarity=0.820 Sum_probs=23.5
Q ss_pred cCcccccccccccc--ceeee-cCCcccchhh
Q 037934 90 EKRCEICDKKVGSI--ELKCR-CGHLYCGTHR 118 (141)
Q Consensus 90 ~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR 118 (141)
...|..|.++.+|+ -..|| ||.+||+..-
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs 51 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCC 51 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGS
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCccc
Confidence 46899999999985 56776 8999998653
No 24
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=74.14 E-value=1.7 Score=34.01 Aligned_cols=29 Identities=31% Similarity=1.037 Sum_probs=24.3
Q ss_pred cCcccccccccccc--ceeee-cCCcccchhh
Q 037934 90 EKRCEICDKKVGSI--ELKCR-CGHLYCGTHR 118 (141)
Q Consensus 90 ~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR 118 (141)
...|..|.++.+++ -..|| ||.+||+.+-
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs 195 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCS 195 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhc
Confidence 46899999999985 57787 8999998764
No 25
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=72.83 E-value=2.7 Score=26.23 Aligned_cols=27 Identities=22% Similarity=0.668 Sum_probs=22.7
Q ss_pred cc-ccCCCCCCcccCCCCchhhhhHHHh
Q 037934 5 LC-TKGCGFYGTKEHKSMCSNCYNDFLE 31 (141)
Q Consensus 5 lC-~ngCGFfGs~at~n~CSkCyr~~~~ 31 (141)
.| .-+|-||=|-.|+-+|--||...+.
T Consensus 13 kCeTPnCpF~mSVnTQP~CHEC~errq~ 40 (49)
T 2eqg_A 13 KCETPNCPFFMSVNTQPLCHECSERRQK 40 (49)
T ss_dssp BCSSTTCCSBCCTTTTTSCHHHHHHHHT
T ss_pred eecCCCCCeEEEecCccchHHHHHHHhh
Confidence 35 4689999999999999999986544
No 26
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=72.36 E-value=1 Score=28.97 Aligned_cols=14 Identities=36% Similarity=0.745 Sum_probs=11.8
Q ss_pred ccCccccccccccc
Q 037934 89 LEKRCEICDKKVGS 102 (141)
Q Consensus 89 ~~~rC~~C~kkvgl 102 (141)
.|.||++|+|-||=
T Consensus 2 iPVRCFTCGkvi~~ 15 (55)
T 1ef4_A 2 IPVRCLSCGKPVSA 15 (55)
T ss_dssp CSSSCSCTTSCCHH
T ss_pred CCeecCCCCCChhH
Confidence 37899999998874
No 27
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=70.17 E-value=1.4 Score=29.58 Aligned_cols=14 Identities=43% Similarity=0.802 Sum_probs=12.1
Q ss_pred ccCccccccccccc
Q 037934 89 LEKRCEICDKKVGS 102 (141)
Q Consensus 89 ~~~rC~~C~kkvgl 102 (141)
.|.||++|+|-||=
T Consensus 3 iPVRCFTCGkvi~~ 16 (70)
T 1twf_J 3 VPVRCFSCGKVVGD 16 (70)
T ss_dssp CCSBCTTTCCBCTT
T ss_pred CCeecCCCCCChHH
Confidence 47899999999975
No 28
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=69.62 E-value=2.1 Score=31.04 Aligned_cols=28 Identities=25% Similarity=0.687 Sum_probs=22.7
Q ss_pred cCcccccccccccc--ceeee-cCCcccchh
Q 037934 90 EKRCEICDKKVGSI--ELKCR-CGHLYCGTH 117 (141)
Q Consensus 90 ~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~H 117 (141)
...|..|.++.+++ --.|| ||.+||+..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~C 49 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTC 49 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGG
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHH
Confidence 36899999999885 45676 999999876
No 29
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=66.10 E-value=1.8 Score=27.70 Aligned_cols=20 Identities=35% Similarity=0.808 Sum_probs=17.6
Q ss_pred ccCccccccccccc--cceeee
Q 037934 89 LEKRCEICDKKVGS--IELKCR 108 (141)
Q Consensus 89 ~~~rC~~C~kkvgl--~gf~CR 108 (141)
.+..|..|++++++ .|++||
T Consensus 18 ~~~~C~~Cg~~i~~gkq~~kC~ 39 (61)
T 4b6d_A 18 KPESCVPCGKRIKFGKLSLKCR 39 (61)
T ss_dssp SCEECTTTCCEECTTCEEEEES
T ss_pred CCcccccccCEEEEeeEeeECC
Confidence 46799999999987 699998
No 30
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=64.02 E-value=1.9 Score=28.62 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=11.5
Q ss_pred ccCccccccccccc
Q 037934 89 LEKRCEICDKKVGS 102 (141)
Q Consensus 89 ~~~rC~~C~kkvgl 102 (141)
.|-|||+|+|-||=
T Consensus 3 IPVRCFTCGkvi~~ 16 (66)
T 4ayb_N 3 IPIRCFTCGSLIAD 16 (66)
T ss_dssp CCSBCTTTCCBCHH
T ss_pred CCcccCCCcHhHHH
Confidence 37899999998863
No 31
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=54.54 E-value=6.8 Score=23.01 Aligned_cols=23 Identities=35% Similarity=0.803 Sum_probs=17.8
Q ss_pred ccCccccccccc-cc--cceeee-cCC
Q 037934 89 LEKRCEICDKKV-GS--IELKCR-CGH 111 (141)
Q Consensus 89 ~~~rC~~C~kkv-gl--~gf~CR-Cg~ 111 (141)
.|..|..|++.+ || .|++|+ |+.
T Consensus 10 ~pt~C~~C~~~l~g~~~qg~~C~~C~~ 36 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQGLKCEDCGM 36 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCC
T ss_pred CCCCcCCCCceeeccCCccCEeCCCCC
Confidence 577899999988 44 699997 443
No 32
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.42 E-value=6 Score=25.56 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=21.2
Q ss_pred Cccccccccccccceee--ecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKC--RCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~C--RCg~~fC~~HR 118 (141)
-+|..|++.+....|.. +=|.+||..|-
T Consensus 43 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y 72 (82)
T 2co8_A 43 FRCHTCEATLWPGGYEQHPGDGHFYCLQHL 72 (82)
T ss_dssp CBCSSSCCBCCTTSEECCTTTCCCEETTTC
T ss_pred CEEcCCCCCcCCCceeEeCcCCEEEChHHH
Confidence 46778888887777764 57889998874
No 33
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=51.07 E-value=6.1 Score=24.11 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=22.1
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.++...|.=+=|..||..|-
T Consensus 40 F~C~~C~~~L~~~~~~~~~g~~yC~~~y 67 (72)
T 3f6q_B 40 FVCAQCFQQFPEGLFYEFEGRKYCEHDF 67 (72)
T ss_dssp SSCTTTCCCCGGGCCEEETTEEECHHHH
T ss_pred CcccCCCCCCCCCCeEeECCeEeCHHHH
Confidence 4678899888777777788889998763
No 34
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=50.86 E-value=3.2 Score=34.22 Aligned_cols=29 Identities=21% Similarity=0.574 Sum_probs=0.0
Q ss_pred cCcccccccccccc--ceeee-cCCcccchhh
Q 037934 90 EKRCEICDKKVGSI--ELKCR-CGHLYCGTHR 118 (141)
Q Consensus 90 ~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR 118 (141)
...|..|+++.+++ ...|| ||.+||+.+-
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs 406 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCS 406 (434)
T ss_dssp --------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhC
Confidence 46899999999985 57776 9999998764
No 35
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.39 E-value=8.6 Score=25.36 Aligned_cols=24 Identities=33% Similarity=0.740 Sum_probs=18.7
Q ss_pred ccCccccccccc-cc--cceeee-cCCc
Q 037934 89 LEKRCEICDKKV-GS--IELKCR-CGHL 112 (141)
Q Consensus 89 ~~~rC~~C~kkv-gl--~gf~CR-Cg~~ 112 (141)
.+..|..|++.+ || .|++|+ |+.+
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~~C~~~ 54 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCRQCNAA 54 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEETTTCCE
T ss_pred CCcChhhcChhhccccccccccCCcCCe
Confidence 578999999988 55 699998 5443
No 36
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.44 E-value=8 Score=23.81 Aligned_cols=28 Identities=21% Similarity=0.593 Sum_probs=22.9
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~ 59 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCH 59 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHh
Confidence 4788888888887888788999998764
No 37
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=45.84 E-value=10 Score=32.98 Aligned_cols=30 Identities=17% Similarity=0.437 Sum_probs=24.7
Q ss_pred ccCccccccccc-cc--cceeee-cCCcccchhh
Q 037934 89 LEKRCEICDKKV-GS--IELKCR-CGHLYCGTHR 118 (141)
Q Consensus 89 ~~~rC~~C~kkv-gl--~gf~CR-Cg~~fC~~HR 118 (141)
.+..|..|++.+ || .|++|+ ||.+.|....
T Consensus 528 ~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~ 561 (587)
T 3ky9_A 528 ETTSCKACQMLLRGTFYQGYRCHRCRASAHKECL 561 (587)
T ss_dssp SCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGG
T ss_pred CCcccccccccccccccCCcCCCCCCCccchhhh
Confidence 578999999997 87 599998 8888776655
No 38
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.27 E-value=9.1 Score=24.22 Aligned_cols=28 Identities=25% Similarity=0.660 Sum_probs=21.5
Q ss_pred ccCcccccccccccc----ceeee---cCCcccch
Q 037934 89 LEKRCEICDKKVGSI----ELKCR---CGHLYCGT 116 (141)
Q Consensus 89 ~~~rC~~C~kkvgl~----gf~CR---Cg~~fC~~ 116 (141)
...+|..|+..|-+. -..|+ |+..||-.
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~ 39 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWV 39 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSS
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeC
Confidence 346899998888773 56888 99999854
No 39
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=44.98 E-value=10 Score=24.69 Aligned_cols=25 Identities=24% Similarity=0.652 Sum_probs=20.0
Q ss_pred cccCccccccccccccceeee-cCCc
Q 037934 88 ALEKRCEICDKKVGSIELKCR-CGHL 112 (141)
Q Consensus 88 ~~~~rC~~C~kkvgl~gf~CR-Cg~~ 112 (141)
..+..|..|+..|+-.|++|+ ||.+
T Consensus 33 ~~pt~C~~C~~~l~~qG~kC~~C~~~ 58 (72)
T 2fnf_X 33 GGPGWCDLCGREVLRQALRCANCKFT 58 (72)
T ss_dssp SSCCBCTTTSSBCSSCCEECTTSSCE
T ss_pred CCCcchhhhhHHHHhCcCccCCCCCe
Confidence 457899999999966899998 5443
No 40
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=42.82 E-value=14 Score=23.18 Aligned_cols=23 Identities=39% Similarity=0.806 Sum_probs=17.9
Q ss_pred ccCccccccccc-cc--cceeee-cCC
Q 037934 89 LEKRCEICDKKV-GS--IELKCR-CGH 111 (141)
Q Consensus 89 ~~~rC~~C~kkv-gl--~gf~CR-Cg~ 111 (141)
.|..|..|++.+ || .|++|+ |+.
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~ 48 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCDACGM 48 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEESSSCC
T ss_pred CCcCchhcChhheecCCcccccCCCCC
Confidence 467899999987 55 699997 543
No 41
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=41.99 E-value=8.2 Score=24.78 Aligned_cols=24 Identities=21% Similarity=0.665 Sum_probs=19.1
Q ss_pred ccccccccccccc-eee-ecCCcccc
Q 037934 92 RCEICDKKVGSIE-LKC-RCGHLYCG 115 (141)
Q Consensus 92 rC~~C~kkvgl~g-f~C-RCg~~fC~ 115 (141)
.|+.|.+.+.-.+ |.| +|+..||-
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~ 42 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCV 42 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCH
T ss_pred cccccCcccCCCccEECCccCcCccc
Confidence 4999999985544 888 68889985
No 42
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.95 E-value=21 Score=21.27 Aligned_cols=26 Identities=31% Similarity=0.701 Sum_probs=17.5
Q ss_pred cCccccccccccccceeeecCCcccch
Q 037934 90 EKRCEICDKKVGSIELKCRCGHLYCGT 116 (141)
Q Consensus 90 ~~rC~~C~kkvgl~gf~CRCg~~fC~~ 116 (141)
...|..|...+-- -..-.||++||..
T Consensus 20 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 45 (63)
T 2ysj_A 20 EVICPICLDILQK-PVTIDCGHNFCLK 45 (63)
T ss_dssp CCBCTTTCSBCSS-CEECTTSSEECHH
T ss_pred CCCCCcCCchhCC-eEEeCCCCcchHH
Confidence 4678888765443 2233899999954
No 43
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=41.80 E-value=10 Score=22.98 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=22.3
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~y 59 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETHY 59 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHHH
Confidence 4778888888777788888889997763
No 44
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=41.64 E-value=10 Score=24.68 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=21.9
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 52 F~C~~C~~~L~~~~~~~~~g~~yC~~~y 79 (89)
T 1x64_A 52 FVCADCNLNLKQKGYFFVEGELYCETHA 79 (89)
T ss_dssp CCCSSSCCCTTTSCCEEETTEEECHHHH
T ss_pred CEecCCCCCCCCCCeEeECCEEECHHHH
Confidence 4677888888776777788889998764
No 45
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=40.53 E-value=9.6 Score=22.58 Aligned_cols=22 Identities=32% Similarity=0.748 Sum_probs=17.5
Q ss_pred ccCccccccccccccceeee-cCC
Q 037934 89 LEKRCEICDKKVGSIELKCR-CGH 111 (141)
Q Consensus 89 ~~~rC~~C~kkvgl~gf~CR-Cg~ 111 (141)
.|..|..|++.+- .|++|+ |+.
T Consensus 13 ~pt~C~~C~~~l~-qG~~C~~C~~ 35 (52)
T 1faq_A 13 KLAFCDICQKFLL-NGFRCQTCGY 35 (52)
T ss_dssp SCEECTTSSSEEC-SEEECTTTTC
T ss_pred CCcCCCCcccccc-cCCEeCCCCC
Confidence 4679999999875 899997 543
No 46
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.05 E-value=12 Score=23.05 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=22.5
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy 61 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCY 61 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHH
Confidence 4777888888766788888889998875
No 47
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.73 E-value=11 Score=23.42 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=22.1
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+....|.=+=|..||..|-
T Consensus 40 F~C~~C~~~L~~~~~~~~~g~~yC~~~y 67 (77)
T 1g47_A 40 FVCAQCFQQFPEGLFYEFEGRKYCEHDF 67 (77)
T ss_dssp CCCTTTCCCCGGGCSEEETTEEECHHHH
T ss_pred CeECCCCCCCCCCCeEeECCeEeCHHHH
Confidence 4677888888877788888889997763
No 48
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.60 E-value=13 Score=23.26 Aligned_cols=28 Identities=11% Similarity=0.318 Sum_probs=22.3
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy 63 (76)
T 1x68_A 36 FNCGKCSVSLVGKGFLTQNKEIFCQKCG 63 (76)
T ss_dssp CBCTTTCCBCSSSCEEEETTEEEETTTT
T ss_pred CChhhCCCcCCCCceEeECCEEECHHHh
Confidence 4777888888767788888889998764
No 49
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.42 E-value=18 Score=22.29 Aligned_cols=25 Identities=24% Similarity=0.651 Sum_probs=16.8
Q ss_pred cCccccccccccccceeeecCCcccc
Q 037934 90 EKRCEICDKKVGSIELKCRCGHLYCG 115 (141)
Q Consensus 90 ~~rC~~C~kkvgl~gf~CRCg~~fC~ 115 (141)
...|..|...+.- ...-.||++||.
T Consensus 15 ~~~C~IC~~~~~~-~~~~~CgH~fC~ 39 (71)
T 2d8t_A 15 VPECAICLQTCVH-PVSLPCKHVFCY 39 (71)
T ss_dssp CCBCSSSSSBCSS-EEEETTTEEEEH
T ss_pred CCCCccCCcccCC-CEEccCCCHHHH
Confidence 4578888765433 233479999985
No 50
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=39.28 E-value=9.9 Score=23.65 Aligned_cols=24 Identities=25% Similarity=0.697 Sum_probs=19.1
Q ss_pred cccCccccccccccccceeee-cCC
Q 037934 88 ALEKRCEICDKKVGSIELKCR-CGH 111 (141)
Q Consensus 88 ~~~~rC~~C~kkvgl~gf~CR-Cg~ 111 (141)
..+..|..|++.|.-.|++|. |+.
T Consensus 20 ~~pt~C~~C~~~i~kqg~kC~~C~~ 44 (59)
T 1rfh_A 20 GGPGWCDLCGREVLRQALRCANCKF 44 (59)
T ss_dssp SCCEECTTTCSEECSCCEECTTTSC
T ss_pred CCCeEchhcchhhhhCccEeCCCCC
Confidence 357899999999955799998 443
No 51
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=38.94 E-value=16 Score=22.79 Aligned_cols=20 Identities=30% Similarity=0.644 Sum_probs=16.5
Q ss_pred ccCccccccccc-cc--cceeee
Q 037934 89 LEKRCEICDKKV-GS--IELKCR 108 (141)
Q Consensus 89 ~~~rC~~C~kkv-gl--~gf~CR 108 (141)
.|..|..|++.| || .|++|+
T Consensus 19 ~pt~C~~C~~~l~Gl~~qg~~C~ 41 (65)
T 3uej_A 19 SPTFCDHCGSLLWGLVKQGLKCE 41 (65)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEET
T ss_pred CCCcccccChhhhccCceeeECC
Confidence 477999999987 55 699997
No 52
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.35 E-value=13 Score=22.85 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=22.1
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~c~ 63 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLTERDDILCPDCG 63 (72)
T ss_dssp CBCSSSCCBCTTSCCEECSSSEECHHHH
T ss_pred CEeccCCCcCCCCccEeECCEEEChhHc
Confidence 4777888888777787788889997763
No 53
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=38.15 E-value=14 Score=24.04 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=16.2
Q ss_pred cccCcccccccccccc---ceeee
Q 037934 88 ALEKRCEICDKKVGSI---ELKCR 108 (141)
Q Consensus 88 ~~~~rC~~C~kkvgl~---gf~CR 108 (141)
....+|..|+..+.|. ..+|+
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~ 42 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCR 42 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCS
T ss_pred CeEEECCCCCCeeecCCCCceECC
Confidence 3468999999999883 67774
No 54
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.84 E-value=14 Score=22.69 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=22.0
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy 61 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCY 61 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHHH
Confidence 4677888888777787788889997764
No 55
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.45 E-value=26 Score=21.27 Aligned_cols=26 Identities=31% Similarity=0.701 Sum_probs=17.4
Q ss_pred cCccccccccccccceeeecCCcccch
Q 037934 90 EKRCEICDKKVGSIELKCRCGHLYCGT 116 (141)
Q Consensus 90 ~~rC~~C~kkvgl~gf~CRCg~~fC~~ 116 (141)
...|..|...+.- -..-.||++||..
T Consensus 20 ~~~C~IC~~~~~~-~~~~~CgH~fC~~ 45 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTIDCGHNFCLK 45 (73)
T ss_dssp CCBCTTTCSBCSS-EEECTTCCEEEHH
T ss_pred CCEeccCCcccCC-eEEcCCCChhhHH
Confidence 4678888775543 2233899999864
No 56
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.17 E-value=15 Score=22.50 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=21.9
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+....|.=+=|.+||..|-
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy 61 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCY 61 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHH
Confidence 4677888888877788788889997764
No 57
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.13 E-value=9.6 Score=24.20 Aligned_cols=28 Identities=18% Similarity=0.371 Sum_probs=21.5
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 42 F~C~~C~~~L~~~~~~~~~g~~yC~~cy 69 (79)
T 1x62_A 42 YVCTDCGTNLKQKGHFFVEDQIYCEKHA 69 (79)
T ss_dssp TSCSSSCCCHHHHCCEESSSCEECHHHH
T ss_pred CeeCCCCCCCCCCCeEeECCEEECHHHH
Confidence 4677788887766788888889998764
No 58
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=34.94 E-value=19 Score=22.64 Aligned_cols=24 Identities=25% Similarity=0.671 Sum_probs=18.4
Q ss_pred ccCccccccccc-cc--cceeee-cCCc
Q 037934 89 LEKRCEICDKKV-GS--IELKCR-CGHL 112 (141)
Q Consensus 89 ~~~rC~~C~kkv-gl--~gf~CR-Cg~~ 112 (141)
.|..|..|++.| || .|++|+ |+.+
T Consensus 23 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~ 50 (66)
T 1y8f_A 23 TPTYCYECEGLLWGIARQGMRCTECGVK 50 (66)
T ss_dssp SCCCCTTTCCCCCSSCCEEEEETTTCCE
T ss_pred CCcChhhcChhhcccCcceeEcCCCCCe
Confidence 567899999988 54 699997 5443
No 59
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.12 E-value=16 Score=23.05 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=22.4
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+....|.=+=|.+||..|-
T Consensus 44 F~C~~C~~~L~~~~~~~~~~~~yC~~cy 71 (82)
T 1x63_A 44 FTCSNCKQVIGTGSFFPKGEDFYCVTCH 71 (82)
T ss_dssp CCCSSSCCCCTTSCEEEETTEEEEHHHH
T ss_pred CchhhCCCccCCCccEeeCCEEECHHHH
Confidence 4777888888877788888889997764
No 60
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.10 E-value=17 Score=22.17 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=21.7
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy 59 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLNCF 59 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHHHH
T ss_pred CccCCCCCcCCcCceEeeCCeEECHHHH
Confidence 4677888888766777777889997764
No 61
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.06 E-value=17 Score=23.54 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=21.4
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 52 F~C~~C~~~L~~~~f~~~~g~~yC~~cy 79 (90)
T 2dar_A 52 FNCAHCKNTMAYIGFVEEKGALYCELCY 79 (90)
T ss_dssp CBCSSSCCBCSSSCBEESSSCEECHHHH
T ss_pred CccCCCCCCCCCCEeEeECCEEECHHHH
Confidence 4677888888777777777888997764
No 62
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=33.71 E-value=11 Score=26.20 Aligned_cols=14 Identities=21% Similarity=0.638 Sum_probs=11.1
Q ss_pred cccceeeecCCccc
Q 037934 101 GSIELKCRCGHLYC 114 (141)
Q Consensus 101 gl~gf~CRCg~~fC 114 (141)
+...+.||||..|-
T Consensus 20 ~~y~ypCrCGd~F~ 33 (89)
T 2jr7_A 20 ETYFYPCPCGDNFS 33 (89)
T ss_dssp TEEEEECTTSSEEE
T ss_pred CEEEEcCCCCCEEE
Confidence 34578999999983
No 63
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=33.23 E-value=10 Score=25.85 Aligned_cols=13 Identities=23% Similarity=0.731 Sum_probs=10.5
Q ss_pred ccceeeecCCccc
Q 037934 102 SIELKCRCGHLYC 114 (141)
Q Consensus 102 l~gf~CRCg~~fC 114 (141)
.-.+.||||..|-
T Consensus 21 ~y~ypCrCGd~F~ 33 (83)
T 1yop_A 21 MFTYPCPCGDRFQ 33 (83)
T ss_dssp EEEEEETTTEEEE
T ss_pred EEEEeCCCCCeEE
Confidence 4578899999884
No 64
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.91 E-value=16 Score=23.76 Aligned_cols=28 Identities=29% Similarity=0.630 Sum_probs=21.8
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+....|.=+=|.+||..|-
T Consensus 43 F~C~~C~~~L~~~~~~~~~g~~yC~~~y 70 (91)
T 2d8y_A 43 FRCSYCNNKLSLGTYASLHGRIYCKPHF 70 (91)
T ss_dssp CBCTTTCCBCCTTTCCCSSSCCCCHHHH
T ss_pred CeeCCCCCCCCCCCcEeECCEEECHHHH
Confidence 4677888888776677787889998774
No 65
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=32.80 E-value=15 Score=23.19 Aligned_cols=28 Identities=21% Similarity=0.509 Sum_probs=22.4
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+....|.=+=|.+||..|-
T Consensus 35 F~C~~C~~~L~~~~~~~~~~~~yC~~cy 62 (81)
T 1a7i_A 35 FLCMVCRKNLDSTTVAIHDAEVYCKSCY 62 (81)
T ss_dssp EECSSSCCEECSSCCEEETTEEECSHHH
T ss_pred CccCCCCCCCCCCCeEeeCCEEECHHHH
Confidence 4677888888877788888889998775
No 66
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=32.12 E-value=11 Score=24.62 Aligned_cols=26 Identities=23% Similarity=0.646 Sum_probs=18.8
Q ss_pred cCccccccccccc---cceeeecCCcccc
Q 037934 90 EKRCEICDKKVGS---IELKCRCGHLYCG 115 (141)
Q Consensus 90 ~~rC~~C~kkvgl---~gf~CRCg~~fC~ 115 (141)
...|..|--.+-+ .-+-|.||+.||.
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~ 39 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICR 39 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCH
T ss_pred CCcCCccCccCccccccccccCCCCCcCH
Confidence 3468888877644 2445889999995
No 67
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=31.44 E-value=17 Score=23.68 Aligned_cols=23 Identities=30% Similarity=0.774 Sum_probs=18.0
Q ss_pred ccCccccccccc-cc--cceeee-cCC
Q 037934 89 LEKRCEICDKKV-GS--IELKCR-CGH 111 (141)
Q Consensus 89 ~~~rC~~C~kkv-gl--~gf~CR-Cg~ 111 (141)
.|..|..|++-| || .|++|+ |+.
T Consensus 33 ~pt~C~~C~~~lwGl~kqG~~C~~C~~ 59 (77)
T 2enn_A 33 QPTFCSVCHEFVWGLNKQGYQCRQCNA 59 (77)
T ss_dssp SCEECSSSCCEECCTTCCEEECSSSCC
T ss_pred CCcCccccChhhccccccccCcCCCCC
Confidence 577999999987 55 699998 443
No 68
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.05 E-value=14 Score=23.03 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.0
Q ss_pred ccCccccccccccccceeee-cCCc
Q 037934 89 LEKRCEICDKKVGSIELKCR-CGHL 112 (141)
Q Consensus 89 ~~~rC~~C~kkvgl~gf~CR-Cg~~ 112 (141)
.+..|..|+.+++.---+|| ||++
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 46789999999998888887 8876
No 69
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=30.71 E-value=13 Score=25.39 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=11.1
Q ss_pred cccceeeecCCccc
Q 037934 101 GSIELKCRCGHLYC 114 (141)
Q Consensus 101 gl~gf~CRCg~~fC 114 (141)
+...+.||||..|-
T Consensus 27 ~~y~y~CrCGd~F~ 40 (83)
T 1wge_A 27 ETYFYPCPCGDNFA 40 (83)
T ss_dssp TEEEECCSSSSCEE
T ss_pred CEEEEeCCCCCEEE
Confidence 34678999999983
No 70
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.71 E-value=24 Score=23.35 Aligned_cols=24 Identities=25% Similarity=0.611 Sum_probs=18.4
Q ss_pred ccCccccccccc-cc--cceeee-cCCc
Q 037934 89 LEKRCEICDKKV-GS--IELKCR-CGHL 112 (141)
Q Consensus 89 ~~~rC~~C~kkv-gl--~gf~CR-Cg~~ 112 (141)
.|..|..|++.+ || .|++|+ |+.+
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~~C~~~ 54 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCDTCDMN 54 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECSSSCCE
T ss_pred CCcCCcccCccccccccCCCcCCCcCCc
Confidence 577899999987 55 699997 5443
No 71
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.95 E-value=23 Score=22.02 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=22.3
Q ss_pred CccccccccccccceeeecCCcccc-hhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCG-THR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~-~HR 118 (141)
-+|..|++.+....|.=+=|.+||. .|-
T Consensus 37 F~C~~C~~~L~~~~~~~~~g~~yC~~~cy 65 (76)
T 2cu8_A 37 LKCERCSKTLTPGGHAEHDGKPFCHKPCY 65 (76)
T ss_dssp CBCSSSCCBCCTTSCEEETTEEECTTTHH
T ss_pred CCCCCCCCccCCCceEeECCEEecchHHH
Confidence 4788889998877788888889998 464
No 72
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.59 E-value=37 Score=21.18 Aligned_cols=27 Identities=26% Similarity=0.552 Sum_probs=17.8
Q ss_pred cCcccccccccccc---ceeeecCCcccch
Q 037934 90 EKRCEICDKKVGSI---ELKCRCGHLYCGT 116 (141)
Q Consensus 90 ~~rC~~C~kkvgl~---gf~CRCg~~fC~~ 116 (141)
...|..|...+.-. -..-.||++||..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~ 44 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQ 44 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHH
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHH
Confidence 45788887765541 2344799999863
No 73
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.33 E-value=41 Score=19.26 Aligned_cols=26 Identities=27% Similarity=0.782 Sum_probs=17.2
Q ss_pred cCccccccccccccceeeecCCcccch
Q 037934 90 EKRCEICDKKVGSIELKCRCGHLYCGT 116 (141)
Q Consensus 90 ~~rC~~C~kkvgl~gf~CRCg~~fC~~ 116 (141)
...|..|...+-- ...-.||++||..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 40 (58)
T 2ecj_A 15 EASCSVCLEYLKE-PVIIECGHNFCKA 40 (58)
T ss_dssp CCBCSSSCCBCSS-CCCCSSCCCCCHH
T ss_pred CCCCccCCcccCc-cEeCCCCCccCHH
Confidence 4578888765543 2334799999964
No 74
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.08 E-value=25 Score=22.14 Aligned_cols=28 Identities=21% Similarity=0.570 Sum_probs=21.7
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 44 F~C~~C~~~L~~~~f~~~~~~~~C~~c~ 71 (82)
T 2ehe_A 44 FRCCRCQRSLADEPFTCQDSELLCNDCY 71 (82)
T ss_dssp SBCTTTCCBCSSCCEEEETTEEEETTTS
T ss_pred CeecCCCCccCCCccEeeCCEEECHHHH
Confidence 4777888888877787777888887763
No 75
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=27.61 E-value=23 Score=21.97 Aligned_cols=27 Identities=15% Similarity=0.455 Sum_probs=20.6
Q ss_pred CccccccccccccceeeecCCcccchh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTH 117 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~H 117 (141)
-+|..|++.+.-..|.=+=|.+||..|
T Consensus 47 F~C~~C~~~L~~~~f~~~~~~~yC~~c 73 (77)
T 2egq_A 47 FHCKKCSVNLANKRFVFHQEQVYCPDC 73 (77)
T ss_dssp CBCSSSCCBCTTSCCCEETTEECCHHH
T ss_pred CEehhcCCCCCCCccEeECCEEEChHH
Confidence 467788888876677777788888765
No 76
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.56 E-value=25 Score=21.94 Aligned_cols=28 Identities=18% Similarity=0.244 Sum_probs=22.2
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~y 69 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELHY 69 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHHH
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHHH
Confidence 4778888888776777788889998764
No 77
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=25.65 E-value=31 Score=23.27 Aligned_cols=19 Identities=32% Similarity=0.931 Sum_probs=15.8
Q ss_pred cCcccccccccc----ccceeee
Q 037934 90 EKRCEICDKKVG----SIELKCR 108 (141)
Q Consensus 90 ~~rC~~C~kkvg----l~gf~CR 108 (141)
..+|..|+|.++ |+||+|.
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~ 60 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCL 60 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEES
T ss_pred CCEeCCCCCEeCCccCCCCCCCc
Confidence 469999999854 6899997
No 78
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.64 E-value=56 Score=19.99 Aligned_cols=27 Identities=33% Similarity=0.776 Sum_probs=17.9
Q ss_pred cCccccccccccccceeeecCCcccchh
Q 037934 90 EKRCEICDKKVGSIELKCRCGHLYCGTH 117 (141)
Q Consensus 90 ~~rC~~C~kkvgl~gf~CRCg~~fC~~H 117 (141)
...|..|...+-- -..-.||++||..=
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~C 45 (85)
T 2ecv_A 19 EVTCPICLELLTQ-PLSLDCGHSFCQAC 45 (85)
T ss_dssp CCCCTTTCSCCSS-CBCCSSSCCBCTTH
T ss_pred CCCCCCCCcccCC-ceeCCCCCHHHHHH
Confidence 4578888776532 22337999999653
No 79
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.93 E-value=32 Score=20.39 Aligned_cols=27 Identities=30% Similarity=0.819 Sum_probs=17.6
Q ss_pred cCcccccccccccc------ceeeecCCcccch
Q 037934 90 EKRCEICDKKVGSI------ELKCRCGHLYCGT 116 (141)
Q Consensus 90 ~~rC~~C~kkvgl~------gf~CRCg~~fC~~ 116 (141)
...|..|...+.-. -..-.||++||..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~ 47 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ 47 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHH
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHH
Confidence 45788887654321 1456899999853
No 80
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.60 E-value=31 Score=20.88 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=20.6
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy 59 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTAVEDQYYCVDCY 59 (69)
T ss_dssp TBCTTTCCBCTTSCEEECSSCEEEHHHH
T ss_pred CEECCCCCCCCCCccEeECCEEECHHHh
Confidence 4677888888766676677888887653
No 81
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=24.46 E-value=28 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.669 Sum_probs=16.4
Q ss_pred ccccccccccc--cceeeecCCcccchh
Q 037934 92 RCEICDKKVGS--IELKCRCGHLYCGTH 117 (141)
Q Consensus 92 rC~~C~kkvgl--~gf~CRCg~~fC~~H 117 (141)
+|..|++.++. ..|.=+=|.+||..|
T Consensus 90 ~C~~C~~~L~~~g~~f~~~dg~~yC~~c 117 (123)
T 2l4z_A 90 KCSSCQAQLGDIGTSSYTKSGMILCRND 117 (123)
T ss_dssp BCTTTCCBGGGTTCCCBCSSSCCBCHHH
T ss_pred CcCcCCCcccccCCceEEECCEEeCHHH
Confidence 55566776652 356666677777665
No 82
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=24.16 E-value=51 Score=20.36 Aligned_cols=26 Identities=31% Similarity=0.744 Sum_probs=17.5
Q ss_pred cCccccccccccccceeee-cCCcccch
Q 037934 90 EKRCEICDKKVGSIELKCR-CGHLYCGT 116 (141)
Q Consensus 90 ~~rC~~C~kkvgl~gf~CR-Cg~~fC~~ 116 (141)
...|..|...+-- -..-. ||++||..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~ 41 (74)
T 2yur_A 15 ELLCLICKDIMTD-AVVIPCCGNSYCDE 41 (74)
T ss_dssp GGSCSSSCCCCTT-CEECSSSCCEECTT
T ss_pred CCCCcCCChHHhC-CeEcCCCCCHHHHH
Confidence 4578888654432 34456 99999975
No 83
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=23.84 E-value=35 Score=21.14 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=21.9
Q ss_pred CccccccccccccceeeecCCcccc-hhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCG-THR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~-~HR 118 (141)
-+|..|++.+....|.=+=|.+||. .|-
T Consensus 28 F~C~~C~~~L~~~~~~~~~g~~yC~~~cy 56 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHAEHEGKPYCNHPCY 56 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTHH
T ss_pred CCccccCccCCCCceECcCCeEeeCHHHH
Confidence 4778889988877777788889997 453
No 84
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.16 E-value=52 Score=20.50 Aligned_cols=25 Identities=28% Similarity=0.785 Sum_probs=16.9
Q ss_pred cCccccccccccccceeeecCCcccc
Q 037934 90 EKRCEICDKKVGSIELKCRCGHLYCG 115 (141)
Q Consensus 90 ~~rC~~C~kkvgl~gf~CRCg~~fC~ 115 (141)
...|..|...+-- -..-.||++||.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~ 39 (81)
T 2csy_A 15 PFRCFICRQAFQN-PVVTKCRHYFCE 39 (81)
T ss_dssp CSBCSSSCSBCCS-EEECTTSCEEEH
T ss_pred CCCCcCCCchhcC-eeEccCCCHhHH
Confidence 4578888766533 234579999985
No 85
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=22.89 E-value=22 Score=22.79 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=19.1
Q ss_pred ccCccccccccccccceeee-cCC
Q 037934 89 LEKRCEICDKKVGSIELKCR-CGH 111 (141)
Q Consensus 89 ~~~rC~~C~kkvgl~gf~CR-Cg~ 111 (141)
...-|..|.-+....--.|| ||+
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~ 41 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCC
T ss_pred chhhhccccCcCCcccccccCCCC
Confidence 45689999999999999998 663
No 86
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.49 E-value=35 Score=23.11 Aligned_cols=27 Identities=22% Similarity=0.571 Sum_probs=16.3
Q ss_pred cCccccccccccccceeeecCCcccch
Q 037934 90 EKRCEICDKKVGSIELKCRCGHLYCGT 116 (141)
Q Consensus 90 ~~rC~~C~kkvgl~gf~CRCg~~fC~~ 116 (141)
.-.|..|..-+.---.-..||++||..
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~ 48 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSN 48 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTT
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHH
Confidence 467888865443222223789999853
No 87
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.15 E-value=36 Score=23.06 Aligned_cols=28 Identities=21% Similarity=0.589 Sum_probs=20.7
Q ss_pred Cccccccccccc--cceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGS--IELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl--~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.++- ..|.=+=|.+||..|-
T Consensus 31 F~C~~C~~~L~~~g~~~~~~~g~~yC~~~y 60 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDY 60 (114)
T ss_dssp CCCSSSCSCCCCSSSCCCCBTTBCCCHHHH
T ss_pred CcccccCCchhcCCCeeEEECCeeechHHH
Confidence 467778888875 4577777888887775
No 88
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.95 E-value=41 Score=20.88 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=20.8
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~cy 69 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTSRDEDPYCVACF 69 (80)
T ss_dssp CBCSSSCCBCTTCCEEECSSSEEEHHHH
T ss_pred CCcccCCCcCCCCeeEeECCEEECHHHH
Confidence 4677888888665676677888887764
No 89
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.84 E-value=37 Score=23.06 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=23.4
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|..||..|-
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~yC~~cy 58 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKPVCKPCY 58 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEEEEHHHH
T ss_pred CCcCCCCCCCCcCEEEeECCEEechHHh
Confidence 5788899998877888898999998775
No 90
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.71 E-value=38 Score=22.00 Aligned_cols=28 Identities=14% Similarity=0.398 Sum_probs=21.8
Q ss_pred CccccccccccccceeeecCCcccchhh
Q 037934 91 KRCEICDKKVGSIELKCRCGHLYCGTHR 118 (141)
Q Consensus 91 ~rC~~C~kkvgl~gf~CRCg~~fC~~HR 118 (141)
-+|..|++.+.-..|.=+=|.+||..|-
T Consensus 34 F~C~~C~~~L~~~~~~~~~g~~yC~~cy 61 (101)
T 2cup_A 34 FRCAKCLHPLANETFVAKDNKILCNKCT 61 (101)
T ss_dssp CCCSSSCCCTTSSCCEEETTEEECHHHH
T ss_pred CcccccCCCCCcCeeECcCCEEEChhHh
Confidence 4677888888766787788888997764
No 91
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.48 E-value=78 Score=19.28 Aligned_cols=26 Identities=27% Similarity=0.741 Sum_probs=17.5
Q ss_pred cCccccccccccccceeeecCCcccch
Q 037934 90 EKRCEICDKKVGSIELKCRCGHLYCGT 116 (141)
Q Consensus 90 ~~rC~~C~kkvgl~gf~CRCg~~fC~~ 116 (141)
...|..|...+-- ...-.||++||..
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 44 (85)
T 2ecw_A 19 EVTCPICLELLKE-PVSADCNHSFCRA 44 (85)
T ss_dssp TTSCTTTCSCCSS-CEECTTSCCBCHH
T ss_pred CCCCcCCChhhCc-ceeCCCCCHHHHH
Confidence 4578888765432 2345799999964
No 92
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.27 E-value=51 Score=19.70 Aligned_cols=26 Identities=31% Similarity=0.806 Sum_probs=16.9
Q ss_pred cCccccccccccccceeeecCCcccch
Q 037934 90 EKRCEICDKKVGSIELKCRCGHLYCGT 116 (141)
Q Consensus 90 ~~rC~~C~kkvgl~gf~CRCg~~fC~~ 116 (141)
...|..|...+-- ...-.||++||..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 40 (66)
T 2ecy_A 15 KYKCEKCHLVLCS-PKQTECGHRFCES 40 (66)
T ss_dssp CEECTTTCCEESS-CCCCSSSCCCCHH
T ss_pred CCCCCCCChHhcC-eeECCCCCHHHHH
Confidence 4578888655432 2234899999954
No 93
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.27 E-value=63 Score=19.65 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=16.9
Q ss_pred cCccccccccccccceee-ecCCcccch
Q 037934 90 EKRCEICDKKVGSIELKC-RCGHLYCGT 116 (141)
Q Consensus 90 ~~rC~~C~kkvgl~gf~C-RCg~~fC~~ 116 (141)
...|..|...+-- -..- .||++||..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~ 41 (72)
T 2djb_A 15 YILCSICKGYLID-ATTITECLHTFCKS 41 (72)
T ss_dssp GGSCTTTSSCCSS-CEECSSSCCEECHH
T ss_pred CCCCCCCChHHHC-cCEECCCCCHHHHH
Confidence 4578888665432 2233 799999864
Done!