BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037935
(1085 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 512 ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRL-FSLPSSIGQLTKLRMLD 570
ECPQLE L D T + P + F+ + LRV++L+ L S + L LR L+
Sbjct: 397 ECPQLELL--DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLN 454
Query: 571 LT-DCLQLKFIV-PNILSSFTRLEELYMGSC---SIKWEVRKG----------NSERSNA 615
L + Q I N+L LE L + SC SI + G ++ +
Sbjct: 455 LQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGD 514
Query: 616 SLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLERFDISIGDGSFDST 663
S+D L HL+ L L + + I+P L ++ I++ D T
Sbjct: 515 SMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCT 561
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 531 NIPDNFFKGMKKLRVVDLTRVRLFSLPSSI-GQLTKLRMLDLTDCLQLKFIVPNILSSFT 589
++PD F + KL ++ L +L SLP+ + +LT+L+ L L D QLK + I T
Sbjct: 66 SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL-DTNQLKSVPDGIFDRLT 124
Query: 590 RLEELYM 596
L+++++
Sbjct: 125 SLQKIWL 131
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 532 IPDNFFKGMKKLRVVDLTRVRLFSLPSSI-GQLTKLRMLDLTDCLQLKFIVPNILSSFTR 590
+P FK +K L + +T +L +LP + QL L L L D QLK + P + S T+
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL-DRNQLKSLPPRVFDSLTK 134
Query: 591 LEELYMGSCSIKW-------------EVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS 637
L L +G ++ E+R N++ L L TL++D
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Query: 638 ILPDGLF 644
+P+G F
Sbjct: 195 RVPEGAF 201
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 532 IPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKLRMLDLTDCLQLKFIVPNILSSFTR 590
+P F+ + KLR + L + S+PS + ++ LR LDL + +L++I
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 591 LEELYMGSCSIK 602
L L +G C++K
Sbjct: 158 LRYLNLGMCNLK 169
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 532 IPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKLRMLDLTDCLQLKFIVPNILSSFTR 590
+P F+ + KLR + L + S+PS + ++ LR LDL + +L++I
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 591 LEELYMGSCSIK 602
L L +G C++K
Sbjct: 158 LRYLNLGMCNLK 169
>pdb|2BD0|A Chain A, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|B Chain B, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|C Chain C, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|D Chain D, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
Length = 244
Score = 33.1 bits (74), Expect = 0.77, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 184 IIGVYGMG-GIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKI------QGEIAEK 236
I+ + G G GIG+ + EFAR AR F+ V+ D++KI +G + +
Sbjct: 4 ILLITGAGKGIGRA-IALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDT 62
Query: 237 LGLELSDEAEYRR-ASRLYER 256
+ ++SD A+ RR + + ER
Sbjct: 63 ITADISDMADVRRLTTHIVER 83
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 532 IPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKLRMLDLTDCLQLKFIVPNILSSFTR 590
IP F+ + KLR + L + S+PS + ++ L LDL + +L++I
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197
Query: 591 LEELYMGSCSIK 602
L+ L +G C+IK
Sbjct: 198 LKYLNLGMCNIK 209
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 511 FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKLR 567
F QL+ L++ EL P++ F G ++D++R R+ SLPS + L KLR
Sbjct: 174 FNGTQLDELNLSDNNNLEEL--PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 511 FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKLR 567
F QL+ L++ EL P++ F G ++D++R R+ SLPS + L KLR
Sbjct: 174 FNGTQLDELNLSDNNNLEEL--PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 532 IPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKLRMLDLTDCLQLKFIVPNILSSFTR 590
IP+ F + KL+ + L + S+PS + ++ LR LDL + +L +I +
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 591 LEELYMGSCSIKWEVR-------------KGN--SERSNASLDELMHLQRLTTLEIDVE 634
L L + C+++ E+ GN S S LMHLQ+L ++ ++
Sbjct: 187 LRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 669 DWFQTFNIQSIYIFCI---VMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKL 725
D + N+Q +I+ + V+ +L +++ N+L M P FQS +
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS----NKLAFMGPEFQSAAGVTWISLRNN 224
Query: 726 KYIFSASTIQSLEQLQHLEIR----LCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLP 781
K + ++ + L+H ++R C +L++ S+N+ Q A + T KL G
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA-----KQTVKKLTGQN 279
Query: 782 ELRCLYPGM 790
E C P +
Sbjct: 280 EEECTVPTL 288
>pdb|3AIX|A Chain A, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (I222)
pdb|3AIZ|C Chain C, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (P21212)
pdb|3AIZ|D Chain D, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (P21212)
Length = 246
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 487 DGDALKKCYAISLLNSSIHEVSLEFECPQLEFLHIDP-KITFAELNIPDNFFK 538
D DA Y L I E++L+F L+ IDP ++TF ++ IP +F+
Sbjct: 7 DADAFS--YIFRTLEEFIDEITLDFTSDGLKIRGIDPSRVTFIDILIPAGYFE 57
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 674 FNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSAST 733
++++ +F + L+L++ N+L M P FQS + K +
Sbjct: 182 YDVKGQVVFAKLKTLDLSS---------NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232
Query: 734 IQSLEQLQHLEIR----LCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPG 789
++ + L+H ++R C +L++ S+N+ Q A + T KL G E C P
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA-----KQTVKKLTGQNEEECTVPT 287
Query: 790 M 790
+
Sbjct: 288 L 288
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 21/144 (14%)
Query: 537 FKGMKKLRVVDLTRVRLFSLPSSI-GQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELY 595
K + L + LT +L SLP+ + +LT L+ L L + QL+ + + T L LY
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLY 139
Query: 596 MGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTK--KLERFDI 653
+ ++ + KG D+L +L RL ++D LP+G+F K +L++ +
Sbjct: 140 LYHNQLQ-SLPKG-------VFDKLTNLTRL---DLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 654 ------SIGDGSFDSTKIIGNDWF 671
S+ DG FD + + W
Sbjct: 189 NDNQLKSVPDGVFDRLTSLTHIWL 212
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 623 LQRLTTLEIDVEDDSILPDGLFTKKLERFDISIGD--------GSFDSTKIIGNDWF 671
L +LT L++D ++LP G+F K + +S+ D G+FD+ K + + W
Sbjct: 61 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 623 LQRLTTLEIDVEDDSILPDGLFTKKLERFDISIGD--------GSFDSTKIIGNDWF 671
L +LT L++D ++LP G+F K + +S+ D G+FD+ K + + W
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
>pdb|1U7U|A Chain A, Phosphopantothenoylcysteine Synthetase From E. Coli
pdb|1U7W|A Chain A, Phosphopantothenoylcysteine Synthetase From E. Coli, Ctp-
Complex
pdb|1U7W|B Chain B, Phosphopantothenoylcysteine Synthetase From E. Coli, Ctp-
Complex
pdb|1U7W|C Chain C, Phosphopantothenoylcysteine Synthetase From E. Coli, Ctp-
Complex
pdb|1U7Z|A Chain A, Phosphopantothenoylcysteine Synthetase From E. Coli, 4'-
Phosphopantothenoyl-Cmp Complex
pdb|1U7Z|B Chain B, Phosphopantothenoylcysteine Synthetase From E. Coli, 4'-
Phosphopantothenoyl-Cmp Complex
pdb|1U7Z|C Chain C, Phosphopantothenoylcysteine Synthetase From E. Coli, 4'-
Phosphopantothenoyl-Cmp Complex
pdb|1U80|A Chain A, Phosphopantothenoylcysteine Synthetase From E. Coli, Cmp
Complex
pdb|1U80|B Chain B, Phosphopantothenoylcysteine Synthetase From E. Coli, Cmp
Complex
pdb|1U80|C Chain C, Phosphopantothenoylcysteine Synthetase From E. Coli, Cmp
Complex
Length = 226
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 141 DIVSHRTTPEEIWLKSNKGYEAFESRVSTLKSIQNALTDVNVSIIG---VYGMGGIGKTT 197
D + PE+I ++ +G E T+K ++N V+ + Y +G +T
Sbjct: 99 DYRAATVAPEKIKKQATQGDEL------TIKMVKNPDIVAGVAALKDHRPYVVGFAAETN 152
Query: 198 LVKEFARQAREKKLFDRVVFSEVSQ 222
V+E+ARQ R +K D + ++VSQ
Sbjct: 153 NVEEYARQKRIRKNLDLICANDVSQ 177
>pdb|1XL3|A Chain A, Complex Structure Of Y.Pestis Virulence Factors Yopn And
Tyea
pdb|1XL3|B Chain B, Complex Structure Of Y.Pestis Virulence Factors Yopn And
Tyea
Length = 218
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 97 DEESTNKRCLKGLCPNLKTRYQLSKKAETEVKALVELGEEVKKFDIVSHRTTPEEIWLKS 156
+E S L GL L R +L+ + +ALV + EE + ++ R TPE
Sbjct: 55 EEPSEQFXMLCGLRDALXGRPELAHLSHLVEQALVSMAEEQGETIVLGARITPE------ 108
Query: 157 NKGYEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVV 216
Y +S V+ L+ +++ D + G+Y + + + + ++
Sbjct: 109 --AYRESQSGVNPLQPLRDTYRDAVMGYQGIYA--------IWSDLQXRFPNGDIDSVIL 158
Query: 217 FSEVSQTPDIKKIQ-GEIAEKLGLELSD 243
F + + + D++ Q G E LG+ +SD
Sbjct: 159 FLQXALSADLQSQQSGSGREXLGIVISD 186
>pdb|1XKP|A Chain A, Crystal Structure Of The Virulence Factor Yopn In Complex
With Its Heterodimeric Chaperone Sycn-Yscb
Length = 246
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 97 DEESTNKRCLKGLCPNLKTRYQLSKKAETEVKALVELGEEVKKFDIVSHRTTPEEIWLKS 156
+E S L GL L R +L+ + +ALV + EE + ++ R TPE
Sbjct: 99 EEPSEQFXMLCGLRDALXGRPELAHLSHLVEQALVSMAEEQGETIVLGARITPE------ 152
Query: 157 NKGYEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVV 216
Y +S V+ L+ +++ D + G+Y + + + + ++
Sbjct: 153 --AYRESQSGVNPLQPLRDTYRDAVMGYQGIYA--------IWSDLQXRFPNGDIDSVIL 202
Query: 217 FSEVSQTPDIKKIQ-GEIAEKLGLELSD 243
F + + + D++ Q G E LG+ +SD
Sbjct: 203 FLQXALSADLQSQQSGSGREXLGIVISD 230
>pdb|3GGR|B Chain B, Crystal Structure Of The Human Rad9-Hus1-Rad1 Complex
Length = 286
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 372 AETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFYLIDLLRYSMGLGLF 419
AE + I ++L G+Q+ LC+++ N DLL + L F
Sbjct: 234 AEVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYF 281
>pdb|3G65|C Chain C, Crystal Structure Of The Human Rad9-Rad1-Hus1 Dna Damage
Checkpoint Complex
Length = 280
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 372 AETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFYLIDLLRYSMGLGLF 419
AE + I ++L G+Q+ LC+++ N DLL + L F
Sbjct: 228 AEVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYF 275
>pdb|1PM4|A Chain A, Crystal Structure Of Yersinia Pseudotuberculosis-Derived
Mitogen (Ypm)
pdb|1PM4|B Chain B, Crystal Structure Of Yersinia Pseudotuberculosis-Derived
Mitogen (Ypm)
pdb|1PM4|C Chain C, Crystal Structure Of Yersinia Pseudotuberculosis-Derived
Mitogen (Ypm)
Length = 119
Score = 30.0 bits (66), Expect = 7.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 590 RLEELYMGSCSIKWEVRKGNSERSNASLDELMH 622
+ E+ Y S W+++ +SE SN SLD +H
Sbjct: 73 KYEDYYTSGLSWIWKIKNNSSETSNYSLDATVH 105
>pdb|1POQ|A Chain A, Solution Structure Of A Superantigen From Yersinia
Pseudotuberculosis
Length = 118
Score = 30.0 bits (66), Expect = 7.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 590 RLEELYMGSCSIKWEVRKGNSERSNASLDELMH 622
+ E+ Y S W+++ +SE SN SLD +H
Sbjct: 72 KYEDYYTSGLSWIWKIKNNSSETSNYSLDATVH 104
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.0 bits (66), Expect = 8.1, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 623 LQRLTTLEIDVEDDSILPDGLFTKKLERFDISIGD--------GSFDSTKIIGNDWF 671
L +LT L++D ++LP G+F K + +S+ D G+FD+ + + + W
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWL 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,050,597
Number of Sequences: 62578
Number of extensions: 1167307
Number of successful extensions: 3217
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 3198
Number of HSP's gapped (non-prelim): 62
length of query: 1085
length of database: 14,973,337
effective HSP length: 109
effective length of query: 976
effective length of database: 8,152,335
effective search space: 7956678960
effective search space used: 7956678960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)