Query 037935
Match_columns 1085
No_of_seqs 546 out of 4635
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 05:52:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-78 3.6E-83 721.4 49.0 572 43-635 24-653 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.6E-60 1E-64 599.5 49.5 668 158-1013 181-910 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.9E-37 6.2E-42 336.4 16.0 254 166-422 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.2E-33 2.6E-38 361.2 24.8 507 493-1077 70-592 (968)
5 PLN00113 leucine-rich repeat r 100.0 2E-31 4.3E-36 340.8 26.2 501 491-1071 92-609 (968)
6 KOG4194 Membrane glycoprotein 99.9 9.9E-26 2.2E-30 239.5 7.9 395 488-979 48-448 (873)
7 KOG4194 Membrane glycoprotein 99.9 4.2E-25 9.2E-30 234.7 6.1 317 515-979 53-374 (873)
8 KOG0618 Serine/threonine phosp 99.9 4.1E-25 9E-30 248.1 -0.2 470 496-1068 2-488 (1081)
9 KOG0472 Leucine-rich repeat pr 99.9 7.6E-26 1.6E-30 230.1 -8.4 260 494-807 47-308 (565)
10 KOG0444 Cytoskeletal regulator 99.9 1.3E-24 2.8E-29 232.2 -1.8 367 515-1046 8-378 (1255)
11 KOG0444 Cytoskeletal regulator 99.9 2.3E-24 5E-29 230.2 -2.6 320 490-984 53-376 (1255)
12 PLN03210 Resistant to P. syrin 99.9 2.8E-21 6.1E-26 246.3 19.7 344 618-1071 582-945 (1153)
13 KOG0472 Leucine-rich repeat pr 99.9 3.8E-24 8.3E-29 217.8 -6.3 452 514-1067 45-539 (565)
14 KOG0618 Serine/threonine phosp 99.9 2.7E-23 5.9E-28 233.7 -0.8 439 493-1005 46-509 (1081)
15 KOG4237 Extracellular matrix p 99.7 1.6E-18 3.5E-23 177.1 -1.7 127 501-642 55-182 (498)
16 PRK15387 E3 ubiquitin-protein 99.6 3.7E-15 7.9E-20 175.4 13.4 115 836-981 342-456 (788)
17 PRK15387 E3 ubiquitin-protein 99.6 6.5E-15 1.4E-19 173.3 14.6 257 495-901 204-460 (788)
18 KOG4237 Extracellular matrix p 99.6 1.4E-15 3.1E-20 155.8 4.6 124 474-602 50-177 (498)
19 PRK15370 E3 ubiquitin-protein 99.4 4.7E-13 1E-17 159.1 12.5 121 494-641 180-300 (754)
20 KOG0617 Ras suppressor protein 99.4 3.8E-15 8.3E-20 134.5 -5.7 167 504-730 23-190 (264)
21 PRK15370 E3 ubiquitin-protein 99.4 9.2E-13 2E-17 156.7 12.4 74 516-601 180-253 (754)
22 KOG0617 Ras suppressor protein 99.2 3.1E-13 6.6E-18 122.4 -3.6 149 488-654 29-181 (264)
23 PRK04841 transcriptional regul 99.2 4.6E-09 1E-13 134.5 27.1 273 159-469 12-333 (903)
24 KOG4341 F-box protein containi 99.1 6.4E-13 1.4E-17 138.0 -8.2 138 914-1063 318-459 (483)
25 PRK00411 cdc6 cell division co 99.1 1.7E-08 3.7E-13 115.3 27.1 269 159-447 28-357 (394)
26 KOG4658 Apoptotic ATPase [Sign 99.1 1.9E-10 4.1E-15 139.3 8.9 290 491-813 544-846 (889)
27 TIGR03015 pepcterm_ATPase puta 99.1 1.6E-08 3.5E-13 108.9 22.3 163 179-344 40-242 (269)
28 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.3E-15 112.6 4.4 137 501-654 6-148 (175)
29 cd00116 LRR_RI Leucine-rich re 99.1 8.8E-11 1.9E-15 130.6 4.1 91 535-637 17-121 (319)
30 KOG4341 F-box protein containi 99.0 1.2E-11 2.5E-16 128.8 -4.0 293 709-1039 161-461 (483)
31 PF01637 Arch_ATPase: Archaeal 98.9 3.9E-09 8.5E-14 111.4 9.8 175 163-339 1-233 (234)
32 TIGR02928 orc1/cdc6 family rep 98.9 4.2E-07 9.1E-12 102.7 26.3 269 160-447 14-349 (365)
33 PF14580 LRR_9: Leucine-rich r 98.9 2.8E-09 6.2E-14 102.8 6.4 128 492-633 19-149 (175)
34 cd00116 LRR_RI Leucine-rich re 98.8 1.3E-09 2.7E-14 121.3 2.6 86 545-637 2-94 (319)
35 PTZ00112 origin recognition co 98.7 1.4E-06 3E-11 101.0 22.1 114 160-273 754-881 (1164)
36 COG2909 MalT ATP-dependent tra 98.7 2E-06 4.3E-11 99.1 22.5 275 158-470 16-340 (894)
37 KOG3207 Beta-tubulin folding c 98.7 4.2E-09 9.2E-14 110.7 0.6 216 710-954 119-335 (505)
38 KOG1259 Nischarin, modulator o 98.6 5.8E-09 1.3E-13 103.7 -0.6 137 488-642 280-417 (490)
39 PF13855 LRR_8: Leucine rich r 98.6 4E-08 8.6E-13 77.7 3.5 60 541-601 1-61 (61)
40 KOG1259 Nischarin, modulator o 98.6 1.2E-08 2.6E-13 101.5 -0.2 82 541-637 284-365 (490)
41 TIGR00635 ruvB Holliday juncti 98.5 3.6E-06 7.8E-11 92.4 18.6 246 161-448 4-289 (305)
42 PRK00080 ruvB Holliday junctio 98.5 4.8E-06 1E-10 91.8 19.0 257 160-448 24-310 (328)
43 PTZ00202 tuzin; Provisional 98.5 6.5E-06 1.4E-10 88.5 18.6 144 157-310 258-434 (550)
44 KOG0532 Leucine-rich repeat (L 98.5 5.2E-09 1.1E-13 113.4 -4.6 135 499-653 105-241 (722)
45 COG1474 CDC6 Cdc6-related prot 98.5 7.9E-06 1.7E-10 89.7 19.9 182 161-342 17-240 (366)
46 COG2256 MGS1 ATPase related to 98.5 1.9E-06 4.2E-11 90.8 13.4 148 159-335 28-207 (436)
47 PF05729 NACHT: NACHT domain 98.5 1.1E-06 2.4E-11 86.9 10.9 87 183-274 1-94 (166)
48 COG3899 Predicted ATPase [Gene 98.4 5.9E-06 1.3E-10 101.3 19.2 243 162-413 1-333 (849)
49 PF13855 LRR_8: Leucine rich r 98.4 2.6E-07 5.6E-12 73.0 4.6 61 836-898 1-61 (61)
50 PF13401 AAA_22: AAA domain; P 98.4 1E-06 2.2E-11 83.0 9.2 93 181-273 3-99 (131)
51 PRK13342 recombination factor 98.4 2.2E-06 4.8E-11 97.4 13.1 160 161-343 12-199 (413)
52 KOG0532 Leucine-rich repeat (L 98.4 3.4E-08 7.3E-13 107.3 -1.5 136 490-644 119-254 (722)
53 cd01128 rho_factor Transcripti 98.4 8.3E-07 1.8E-11 91.7 8.6 93 180-273 14-115 (249)
54 KOG3207 Beta-tubulin folding c 98.4 1.5E-07 3.3E-12 99.3 2.4 153 489-654 118-279 (505)
55 PRK09376 rho transcription ter 98.4 1.3E-06 2.7E-11 93.7 9.4 100 173-273 159-268 (416)
56 COG4886 Leucine-rich repeat (L 98.3 7.5E-07 1.6E-11 101.9 5.4 174 512-750 114-289 (394)
57 KOG2028 ATPase related to the 98.2 9.9E-05 2.1E-09 76.4 18.8 93 159-273 142-234 (554)
58 PF13191 AAA_16: AAA ATPase do 98.2 4.4E-06 9.6E-11 84.2 9.4 48 162-209 1-51 (185)
59 KOG2227 Pre-initiation complex 98.2 0.00011 2.4E-09 79.2 19.1 183 159-341 148-373 (529)
60 PRK04195 replication factor C 98.2 0.00015 3.3E-09 84.3 21.4 234 160-430 13-280 (482)
61 PRK15386 type III secretion pr 98.2 5.2E-06 1.1E-10 90.2 8.3 32 862-897 52-83 (426)
62 PRK15386 type III secretion pr 98.1 4.5E-06 9.9E-11 90.7 6.6 154 882-1080 48-202 (426)
63 COG4886 Leucine-rich repeat (L 98.1 2.9E-06 6.2E-11 97.1 5.3 174 537-780 112-287 (394)
64 TIGR00767 rho transcription te 98.1 1.6E-05 3.6E-10 85.9 10.2 93 180-273 166-267 (415)
65 KOG2120 SCF ubiquitin ligase, 98.1 6E-07 1.3E-11 89.8 -0.7 63 710-780 311-373 (419)
66 PF12799 LRR_4: Leucine Rich r 98.1 3.7E-06 8E-11 60.4 3.5 41 541-582 1-41 (44)
67 PRK14949 DNA polymerase III su 98.1 4.5E-05 9.7E-10 90.5 14.4 162 161-340 16-220 (944)
68 PLN03150 hypothetical protein; 98.1 1E-05 2.2E-10 96.9 9.1 81 516-601 420-502 (623)
69 PF05496 RuvB_N: Holliday junc 98.0 9.1E-05 2E-09 73.2 13.9 51 159-209 22-77 (233)
70 cd00009 AAA The AAA+ (ATPases 98.0 3.1E-05 6.7E-10 74.8 10.8 96 164-273 1-96 (151)
71 PRK05564 DNA polymerase III su 98.0 0.0001 2.3E-09 80.7 15.9 156 161-338 4-188 (313)
72 PRK14961 DNA polymerase III su 98.0 0.00019 4.2E-09 80.1 18.2 159 161-337 16-217 (363)
73 PLN03025 replication factor C 98.0 5.9E-05 1.3E-09 82.8 13.7 159 161-335 13-195 (319)
74 PRK12402 replication factor C 98.0 9.7E-05 2.1E-09 82.6 14.9 48 161-208 15-62 (337)
75 KOG1909 Ran GTPase-activating 98.0 1.6E-06 3.4E-11 89.3 0.1 89 512-601 28-132 (382)
76 PRK11331 5-methylcytosine-spec 98.0 3.2E-05 6.9E-10 85.3 10.0 108 161-273 175-284 (459)
77 PRK00440 rfc replication facto 98.0 0.0002 4.4E-09 79.3 16.7 159 161-337 17-200 (319)
78 PRK14963 DNA polymerase III su 98.0 0.00015 3.3E-09 83.5 15.9 173 161-337 14-214 (504)
79 KOG2004 Mitochondrial ATP-depe 97.9 0.00025 5.4E-09 80.2 16.1 102 160-273 410-517 (906)
80 PRK14960 DNA polymerase III su 97.9 0.00012 2.7E-09 84.1 14.0 159 161-337 15-216 (702)
81 TIGR02903 spore_lon_C ATP-depe 97.9 0.003 6.5E-08 75.2 26.1 61 161-221 154-217 (615)
82 PF13173 AAA_14: AAA domain 97.9 3.1E-05 6.7E-10 72.1 7.1 93 182-294 2-94 (128)
83 PLN03150 hypothetical protein; 97.9 2.9E-05 6.2E-10 93.1 8.7 100 542-654 419-523 (623)
84 PRK12323 DNA polymerase III su 97.9 0.0002 4.3E-09 82.3 14.7 157 161-339 16-224 (700)
85 PRK14957 DNA polymerase III su 97.9 0.00021 4.5E-09 82.4 14.9 163 161-341 16-222 (546)
86 PRK07003 DNA polymerase III su 97.9 0.00022 4.9E-09 83.0 15.0 157 161-339 16-220 (830)
87 PRK14962 DNA polymerase III su 97.8 0.00042 9.1E-09 79.2 16.8 179 161-357 14-240 (472)
88 KOG2543 Origin recognition com 97.8 0.00012 2.6E-09 76.9 10.9 113 161-278 6-132 (438)
89 PRK05896 DNA polymerase III su 97.8 0.00028 6.1E-09 81.3 14.8 48 161-208 16-64 (605)
90 PRK13341 recombination factor 97.8 9E-05 2E-09 88.7 11.2 47 161-207 28-77 (725)
91 PRK14956 DNA polymerase III su 97.8 0.00023 4.9E-09 79.8 13.5 168 161-337 18-219 (484)
92 TIGR03420 DnaA_homol_Hda DnaA 97.8 0.00014 3E-09 75.9 11.2 55 166-222 22-76 (226)
93 PRK06645 DNA polymerase III su 97.8 0.00057 1.2E-08 78.4 16.3 155 161-337 21-226 (507)
94 PRK07940 DNA polymerase III su 97.8 0.00051 1.1E-08 76.5 15.5 155 161-339 5-212 (394)
95 PRK14958 DNA polymerase III su 97.8 0.00037 8E-09 80.5 14.9 48 161-208 16-64 (509)
96 PRK14955 DNA polymerase III su 97.8 0.00039 8.4E-09 78.6 14.6 175 161-336 16-224 (397)
97 KOG2120 SCF ubiquitin ligase, 97.8 1.3E-06 2.9E-11 87.4 -4.5 41 710-752 208-248 (419)
98 PRK07994 DNA polymerase III su 97.7 0.00031 6.7E-09 82.3 13.8 172 161-340 16-220 (647)
99 TIGR01242 26Sp45 26S proteasom 97.7 0.00065 1.4E-08 76.1 15.8 50 158-207 119-181 (364)
100 TIGR02397 dnaX_nterm DNA polym 97.7 0.00088 1.9E-08 75.4 16.7 47 161-207 14-61 (355)
101 PF05621 TniB: Bacterial TniB 97.7 0.0017 3.8E-08 67.6 17.0 105 169-273 45-157 (302)
102 PRK08691 DNA polymerase III su 97.7 0.0005 1.1E-08 80.2 14.5 47 161-207 16-63 (709)
103 PRK14964 DNA polymerase III su 97.7 0.00059 1.3E-08 77.5 14.7 158 161-336 13-213 (491)
104 KOG1859 Leucine-rich repeat pr 97.7 1.1E-06 2.4E-11 98.3 -6.8 134 489-641 161-296 (1096)
105 PRK07471 DNA polymerase III su 97.7 0.0011 2.3E-08 73.3 16.2 174 159-340 17-238 (365)
106 PRK09112 DNA polymerase III su 97.7 0.0014 3.1E-08 72.0 17.0 176 159-340 21-240 (351)
107 COG0466 Lon ATP-dependent Lon 97.7 0.00054 1.2E-08 78.2 13.8 130 161-310 323-458 (782)
108 TIGR00678 holB DNA polymerase 97.7 0.00092 2E-08 67.2 14.5 37 172-208 3-40 (188)
109 PRK14951 DNA polymerase III su 97.7 0.00061 1.3E-08 79.7 14.8 47 161-207 16-63 (618)
110 PRK14969 DNA polymerase III su 97.7 0.00095 2.1E-08 77.8 16.2 157 161-335 16-215 (527)
111 PRK06893 DNA replication initi 97.7 0.00077 1.7E-08 69.9 14.0 39 181-221 38-76 (229)
112 KOG0989 Replication factor C, 97.7 0.00035 7.6E-09 71.3 10.7 167 159-340 34-231 (346)
113 KOG1909 Ran GTPase-activating 97.6 2.8E-05 6.1E-10 80.3 2.4 93 490-583 28-138 (382)
114 KOG2982 Uncharacterized conser 97.6 3.6E-05 7.7E-10 77.5 3.0 84 538-636 68-158 (418)
115 KOG0531 Protein phosphatase 1, 97.6 8.9E-06 1.9E-10 93.1 -1.5 101 537-653 91-193 (414)
116 COG2255 RuvB Holliday junction 97.6 0.006 1.3E-07 61.9 17.7 50 160-209 25-79 (332)
117 COG3903 Predicted ATPase [Gene 97.5 0.00023 4.9E-09 76.2 7.9 219 181-407 13-258 (414)
118 PF14516 AAA_35: AAA-like doma 97.5 0.0082 1.8E-07 66.0 20.2 179 160-346 10-245 (331)
119 KOG1859 Leucine-rich repeat pr 97.5 7E-06 1.5E-10 92.1 -4.1 105 536-656 182-289 (1096)
120 PRK09111 DNA polymerase III su 97.5 0.0016 3.5E-08 76.5 14.8 49 160-208 23-72 (598)
121 KOG3665 ZYG-1-like serine/thre 97.5 7.3E-05 1.6E-09 89.1 3.6 137 492-637 122-263 (699)
122 PRK14959 DNA polymerase III su 97.4 0.002 4.2E-08 75.0 14.6 48 161-208 16-64 (624)
123 PRK14950 DNA polymerase III su 97.4 0.0026 5.6E-08 75.7 16.1 47 161-207 16-63 (585)
124 PRK14952 DNA polymerase III su 97.4 0.0022 4.7E-08 74.9 15.0 47 161-207 13-60 (584)
125 PF12799 LRR_4: Leucine Rich r 97.4 0.00015 3.3E-09 52.0 3.5 37 564-602 1-37 (44)
126 PRK07764 DNA polymerase III su 97.4 0.002 4.3E-08 78.5 15.1 48 161-208 15-63 (824)
127 PRK03992 proteasome-activating 97.4 0.0049 1.1E-07 69.4 17.4 49 159-207 129-190 (389)
128 PRK14954 DNA polymerase III su 97.4 0.002 4.2E-08 75.9 14.6 48 161-208 16-64 (620)
129 TIGR03345 VI_ClpV1 type VI sec 97.4 0.0013 2.8E-08 81.1 13.6 48 160-207 186-233 (852)
130 PRK14970 DNA polymerase III su 97.4 0.0031 6.8E-08 71.0 15.7 47 161-207 17-64 (367)
131 PF00004 AAA: ATPase family as 97.4 0.00039 8.5E-09 65.4 7.0 69 185-273 1-70 (132)
132 PRK14953 DNA polymerase III su 97.4 0.004 8.7E-08 71.7 16.3 47 161-207 16-63 (486)
133 CHL00095 clpC Clp protease ATP 97.4 0.00092 2E-08 83.0 11.5 100 161-272 179-282 (821)
134 PRK09087 hypothetical protein; 97.4 0.0034 7.5E-08 64.6 13.9 162 181-358 43-221 (226)
135 TIGR02881 spore_V_K stage V sp 97.4 0.00084 1.8E-08 71.4 9.7 46 162-207 7-67 (261)
136 KOG4579 Leucine-rich repeat (L 97.4 2.6E-05 5.7E-10 69.1 -1.4 93 537-643 49-142 (177)
137 PRK07133 DNA polymerase III su 97.3 0.0037 8.1E-08 73.9 15.2 47 161-207 18-65 (725)
138 PRK14971 DNA polymerase III su 97.3 0.0056 1.2E-07 72.6 16.6 156 161-335 17-217 (614)
139 KOG1947 Leucine rich repeat pr 97.3 1.8E-05 3.8E-10 93.9 -4.4 195 834-1046 241-443 (482)
140 PRK08451 DNA polymerase III su 97.3 0.0068 1.5E-07 69.8 16.4 47 161-207 14-61 (535)
141 PRK08084 DNA replication initi 97.3 0.0057 1.2E-07 63.7 14.6 52 169-222 32-83 (235)
142 TIGR02639 ClpA ATP-dependent C 97.3 0.00096 2.1E-08 81.8 10.2 101 161-273 182-286 (731)
143 PRK14087 dnaA chromosomal repl 97.3 0.0023 5E-08 73.1 12.6 146 183-342 142-321 (450)
144 PRK08118 topology modulation p 97.3 0.00018 3.8E-09 70.3 3.1 35 183-217 2-37 (167)
145 PRK06305 DNA polymerase III su 97.3 0.0057 1.2E-07 70.0 15.6 47 161-207 17-64 (451)
146 KOG0531 Protein phosphatase 1, 97.3 5.5E-05 1.2E-09 86.6 -0.7 104 491-601 94-198 (414)
147 PF05673 DUF815: Protein of un 97.2 0.008 1.7E-07 60.7 14.2 90 158-273 24-118 (249)
148 KOG2982 Uncharacterized conser 97.2 0.00024 5.3E-09 71.6 3.5 174 830-1012 91-265 (418)
149 PHA02544 44 clamp loader, smal 97.2 0.0031 6.8E-08 69.5 12.7 48 160-207 20-68 (316)
150 PRK14948 DNA polymerase III su 97.2 0.0076 1.7E-07 71.5 16.4 48 161-208 16-64 (620)
151 KOG1947 Leucine rich repeat pr 97.2 4.4E-05 9.6E-10 90.4 -2.5 243 795-1072 187-443 (482)
152 KOG0739 AAA+-type ATPase [Post 97.2 0.069 1.5E-06 54.5 20.1 162 162-344 134-348 (439)
153 PF00308 Bac_DnaA: Bacterial d 97.2 0.0037 8E-08 64.1 11.8 50 182-237 34-83 (219)
154 PHA00729 NTP-binding motif con 97.2 0.0021 4.6E-08 64.6 9.6 37 171-207 6-42 (226)
155 KOG3665 ZYG-1-like serine/thre 97.2 6.7E-05 1.5E-09 89.4 -1.2 138 769-925 121-259 (699)
156 PRK12608 transcription termina 97.2 0.0039 8.4E-08 67.5 12.1 101 171-272 121-231 (380)
157 CHL00181 cbbX CbbX; Provisiona 97.2 0.0085 1.8E-07 64.1 14.7 26 183-208 60-85 (287)
158 KOG4579 Leucine-rich repeat (L 97.2 7.5E-05 1.6E-09 66.3 -0.7 85 512-601 51-135 (177)
159 smart00382 AAA ATPases associa 97.1 0.0013 2.9E-08 62.8 7.9 89 183-274 3-91 (148)
160 KOG1644 U2-associated snRNP A' 97.1 0.00056 1.2E-08 65.5 4.8 101 542-654 43-148 (233)
161 COG3267 ExeA Type II secretory 97.1 0.019 4.1E-07 57.8 15.5 161 179-343 48-248 (269)
162 PRK08727 hypothetical protein; 97.1 0.011 2.4E-07 61.4 14.7 58 162-221 20-78 (233)
163 PRK14965 DNA polymerase III su 97.1 0.012 2.6E-07 69.6 16.5 47 161-207 16-63 (576)
164 PRK10536 hypothetical protein; 97.1 0.0047 1E-07 63.2 11.1 54 161-216 55-108 (262)
165 TIGR02880 cbbX_cfxQ probable R 97.1 0.0047 1E-07 66.2 11.6 38 184-221 60-97 (284)
166 PRK06647 DNA polymerase III su 97.0 0.012 2.6E-07 69.0 15.7 47 161-207 16-63 (563)
167 PF04665 Pox_A32: Poxvirus A32 97.0 0.0023 5E-08 65.1 8.1 36 183-220 14-49 (241)
168 TIGR03689 pup_AAA proteasome A 97.0 0.0029 6.2E-08 72.3 9.7 49 160-208 181-242 (512)
169 PRK05563 DNA polymerase III su 97.0 0.017 3.7E-07 68.1 16.4 47 161-207 16-63 (559)
170 PRK07399 DNA polymerase III su 97.0 0.05 1.1E-06 59.0 18.8 176 161-340 4-221 (314)
171 PRK10865 protein disaggregatio 96.9 0.0032 6.8E-08 78.1 10.0 132 160-306 177-323 (857)
172 KOG1644 U2-associated snRNP A' 96.9 0.001 2.2E-08 63.8 4.1 106 515-634 43-150 (233)
173 KOG1514 Origin recognition com 96.9 0.026 5.7E-07 64.7 15.5 111 160-273 395-520 (767)
174 PRK08903 DnaA regulatory inact 96.8 0.034 7.3E-07 57.9 15.6 168 165-344 23-203 (227)
175 PRK07261 topology modulation p 96.8 0.0035 7.6E-08 61.5 7.7 34 184-217 2-36 (171)
176 TIGR00763 lon ATP-dependent pr 96.8 0.012 2.5E-07 72.9 13.7 48 161-208 320-373 (775)
177 PRK11034 clpA ATP-dependent Cl 96.8 0.0039 8.5E-08 75.3 9.1 100 161-272 186-289 (758)
178 CHL00176 ftsH cell division pr 96.8 0.018 3.9E-07 68.4 14.4 92 161-272 183-286 (638)
179 COG1222 RPT1 ATP-dependent 26S 96.8 0.01 2.2E-07 62.4 10.6 96 158-273 148-256 (406)
180 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0042 9.2E-08 77.4 9.2 100 161-273 173-278 (852)
181 PRK08939 primosomal protein Dn 96.7 0.016 3.5E-07 62.5 12.1 124 165-306 135-269 (306)
182 COG1373 Predicted ATPase (AAA+ 96.7 0.01 2.3E-07 66.7 10.9 102 165-289 21-122 (398)
183 PRK14088 dnaA chromosomal repl 96.6 0.023 4.9E-07 65.0 13.5 75 182-272 130-205 (440)
184 PRK12377 putative replication 96.6 0.012 2.7E-07 60.9 10.2 76 181-273 100-175 (248)
185 TIGR00362 DnaA chromosomal rep 96.6 0.018 4E-07 65.7 12.7 75 182-272 136-210 (405)
186 PRK05642 DNA replication initi 96.6 0.06 1.3E-06 55.9 15.4 37 183-221 46-82 (234)
187 PRK10787 DNA-binding ATP-depen 96.6 0.019 4.2E-07 70.1 13.4 47 161-207 322-374 (784)
188 KOG0991 Replication factor C, 96.6 0.0066 1.4E-07 59.3 7.1 99 161-273 27-125 (333)
189 PTZ00361 26 proteosome regulat 96.6 0.011 2.4E-07 66.7 10.1 47 161-207 183-242 (438)
190 TIGR02237 recomb_radB DNA repa 96.5 0.015 3.3E-07 59.6 10.3 47 182-231 12-58 (209)
191 TIGR01241 FtsH_fam ATP-depende 96.5 0.021 4.5E-07 67.0 12.6 93 160-272 54-158 (495)
192 PF00448 SRP54: SRP54-type pro 96.5 0.018 3.9E-07 57.7 10.2 86 183-270 2-92 (196)
193 PRK08116 hypothetical protein; 96.5 0.016 3.5E-07 61.4 10.2 75 183-272 115-189 (268)
194 PRK05707 DNA polymerase III su 96.5 0.046 9.9E-07 59.7 13.8 135 183-340 23-203 (328)
195 TIGR01425 SRP54_euk signal rec 96.4 0.16 3.5E-06 56.8 18.2 88 181-270 99-191 (429)
196 KOG0733 Nuclear AAA ATPase (VC 96.4 0.012 2.6E-07 65.9 9.1 93 161-273 190-294 (802)
197 PTZ00454 26S protease regulato 96.4 0.0092 2E-07 66.8 8.5 93 160-272 144-249 (398)
198 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0046 1E-07 66.7 5.8 47 162-208 52-104 (361)
199 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.019 4.2E-07 60.1 10.4 57 181-238 18-78 (235)
200 COG0542 clpA ATP-binding subun 96.4 0.0049 1.1E-07 72.9 6.3 138 160-310 169-319 (786)
201 PRK08769 DNA polymerase III su 96.4 0.088 1.9E-06 56.9 15.3 40 168-207 11-51 (319)
202 KOG0731 AAA+-type ATPase conta 96.4 0.042 9.2E-07 64.7 13.6 156 162-338 312-522 (774)
203 PF13207 AAA_17: AAA domain; P 96.3 0.0033 7.2E-08 57.9 3.7 24 184-207 1-24 (121)
204 KOG2739 Leucine-rich acidic nu 96.3 0.0014 3E-08 65.9 1.1 61 537-600 61-127 (260)
205 PRK14722 flhF flagellar biosyn 96.3 0.018 3.9E-07 63.2 9.4 88 182-271 137-225 (374)
206 PRK08181 transposase; Validate 96.3 0.11 2.3E-06 54.9 14.7 78 175-272 101-178 (269)
207 PRK07952 DNA replication prote 96.3 0.039 8.4E-07 57.2 11.3 89 169-273 84-174 (244)
208 COG1223 Predicted ATPase (AAA+ 96.2 0.014 3.1E-07 58.1 7.5 92 161-272 121-221 (368)
209 COG0542 clpA ATP-binding subun 96.2 0.091 2E-06 62.5 15.1 103 161-273 491-605 (786)
210 cd01133 F1-ATPase_beta F1 ATP 96.2 0.022 4.8E-07 59.4 9.1 90 181-272 68-174 (274)
211 KOG2123 Uncharacterized conser 96.2 0.00056 1.2E-08 68.5 -2.5 79 542-634 20-98 (388)
212 PRK00771 signal recognition pa 96.1 0.27 5.8E-06 55.7 18.0 87 181-271 94-185 (437)
213 COG1484 DnaC DNA replication p 96.1 0.027 5.8E-07 59.1 9.5 76 181-273 104-179 (254)
214 TIGR03499 FlhF flagellar biosy 96.1 0.029 6.2E-07 60.1 9.9 87 181-269 193-280 (282)
215 KOG0734 AAA+-type ATPase conta 96.1 0.018 3.8E-07 63.5 8.0 92 162-273 305-408 (752)
216 KOG2739 Leucine-rich acidic nu 96.1 0.0038 8.3E-08 62.8 2.7 81 493-574 44-126 (260)
217 KOG0727 26S proteasome regulat 96.1 0.25 5.4E-06 49.2 14.9 92 162-273 156-260 (408)
218 PRK06090 DNA polymerase III su 96.1 0.3 6.6E-06 52.7 17.2 39 169-207 11-50 (319)
219 PRK12422 chromosomal replicati 96.0 0.078 1.7E-06 60.5 13.3 74 182-273 141-214 (445)
220 PF08423 Rad51: Rad51; InterP 96.0 0.044 9.5E-07 57.6 10.5 88 183-271 39-143 (256)
221 PRK14086 dnaA chromosomal repl 96.0 0.07 1.5E-06 62.1 12.8 38 183-220 315-352 (617)
222 PRK12727 flagellar biosynthesi 96.0 0.043 9.2E-07 62.3 10.8 89 181-271 349-438 (559)
223 PRK05541 adenylylsulfate kinas 96.0 0.027 5.8E-07 55.9 8.3 36 181-218 6-41 (176)
224 PRK06696 uridine kinase; Valid 95.9 0.012 2.7E-07 60.8 6.0 44 165-208 2-48 (223)
225 PRK08058 DNA polymerase III su 95.9 0.14 3.1E-06 56.2 14.6 46 162-207 6-53 (329)
226 TIGR03345 VI_ClpV1 type VI sec 95.9 0.043 9.4E-07 68.0 11.6 47 161-207 566-621 (852)
227 PLN03187 meiotic recombination 95.9 0.062 1.3E-06 58.6 11.4 58 182-240 126-187 (344)
228 KOG1969 DNA replication checkp 95.9 0.016 3.5E-07 66.4 7.1 75 181-273 325-399 (877)
229 TIGR02012 tigrfam_recA protein 95.9 0.03 6.5E-07 60.1 8.8 86 181-273 54-145 (321)
230 TIGR01243 CDC48 AAA family ATP 95.9 0.088 1.9E-06 65.1 14.2 92 161-272 453-557 (733)
231 PRK09270 nucleoside triphospha 95.9 0.046 9.9E-07 56.8 10.1 30 180-209 31-60 (229)
232 PRK10865 protein disaggregatio 95.9 0.4 8.6E-06 59.9 19.8 47 161-207 568-623 (857)
233 TIGR02238 recomb_DMC1 meiotic 95.9 0.048 1E-06 59.0 10.4 58 182-240 96-157 (313)
234 TIGR00602 rad24 checkpoint pro 95.8 0.01 2.2E-07 69.9 5.3 50 158-207 81-135 (637)
235 PF01695 IstB_IS21: IstB-like 95.8 0.016 3.4E-07 57.2 5.8 75 181-273 46-120 (178)
236 cd01393 recA_like RecA is a b 95.8 0.045 9.8E-07 56.9 9.6 49 182-230 19-71 (226)
237 PRK11889 flhF flagellar biosyn 95.8 0.08 1.7E-06 57.7 11.4 89 181-271 240-330 (436)
238 KOG0736 Peroxisome assembly fa 95.8 0.062 1.3E-06 62.3 10.9 92 161-273 672-776 (953)
239 PLN00020 ribulose bisphosphate 95.7 0.039 8.5E-07 59.2 8.7 30 180-209 146-175 (413)
240 PRK09361 radB DNA repair and r 95.7 0.059 1.3E-06 56.0 10.1 45 182-229 23-67 (225)
241 PRK06921 hypothetical protein; 95.7 0.046 1E-06 57.8 9.3 72 181-271 116-187 (266)
242 cd00983 recA RecA is a bacter 95.7 0.037 8.1E-07 59.5 8.6 84 182-272 55-144 (325)
243 PRK15455 PrkA family serine pr 95.7 0.014 2.9E-07 66.4 5.4 47 162-208 77-129 (644)
244 PRK09354 recA recombinase A; P 95.7 0.044 9.5E-07 59.4 9.1 85 182-273 60-150 (349)
245 cd01120 RecA-like_NTPases RecA 95.7 0.069 1.5E-06 52.2 10.1 40 184-225 1-40 (165)
246 KOG0733 Nuclear AAA ATPase (VC 95.7 0.043 9.3E-07 61.7 9.0 72 182-273 545-616 (802)
247 PTZ00494 tuzin-like protein; P 95.7 0.6 1.3E-05 51.1 17.0 144 158-310 368-544 (664)
248 PRK10867 signal recognition pa 95.7 0.86 1.9E-05 51.5 19.4 89 181-271 99-193 (433)
249 KOG0741 AAA+-type ATPase [Post 95.7 0.23 5E-06 55.1 14.1 95 181-294 537-644 (744)
250 COG2607 Predicted ATPase (AAA+ 95.6 0.29 6.2E-06 48.9 13.3 99 159-283 58-164 (287)
251 PF00560 LRR_1: Leucine Rich R 95.6 0.0045 9.9E-08 36.8 0.6 17 566-583 2-18 (22)
252 PRK06871 DNA polymerase III su 95.6 0.39 8.4E-06 52.1 15.7 156 169-337 10-200 (325)
253 PRK06526 transposase; Provisio 95.5 0.035 7.6E-07 58.1 7.4 73 182-272 98-170 (254)
254 PRK12723 flagellar biosynthesi 95.5 0.11 2.3E-06 57.9 11.5 90 181-272 173-265 (388)
255 PRK12726 flagellar biosynthesi 95.5 0.08 1.7E-06 57.5 10.1 89 181-271 205-295 (407)
256 COG0194 Gmk Guanylate kinase [ 95.5 0.14 3.1E-06 49.2 10.4 114 182-310 4-136 (191)
257 COG1618 Predicted nucleotide k 95.4 0.022 4.7E-07 52.8 4.7 32 182-214 5-36 (179)
258 KOG2035 Replication factor C, 95.4 0.3 6.4E-06 49.8 12.9 212 162-385 14-282 (351)
259 KOG0738 AAA+-type ATPase [Post 95.4 0.59 1.3E-05 50.1 15.7 29 181-209 244-272 (491)
260 cd01394 radB RadB. The archaea 95.4 0.09 2E-06 54.3 10.0 42 182-225 19-60 (218)
261 PRK06620 hypothetical protein; 95.4 0.11 2.5E-06 52.9 10.5 24 183-206 45-68 (214)
262 PRK08533 flagellar accessory p 95.4 0.12 2.5E-06 53.6 10.6 53 182-239 24-76 (230)
263 KOG0730 AAA+-type ATPase [Post 95.3 0.16 3.5E-06 58.2 12.1 92 161-272 434-538 (693)
264 PRK09183 transposase/IS protei 95.3 0.088 1.9E-06 55.5 9.7 27 182-208 102-128 (259)
265 TIGR02236 recomb_radA DNA repa 95.3 0.12 2.6E-06 56.6 11.1 57 182-239 95-155 (310)
266 COG5238 RNA1 Ran GTPase-activa 95.3 0.013 2.7E-07 58.9 3.0 134 513-654 29-193 (388)
267 PRK07993 DNA polymerase III su 95.3 0.52 1.1E-05 51.7 15.9 39 169-207 10-49 (334)
268 PF13177 DNA_pol3_delta2: DNA 95.3 0.11 2.4E-06 50.4 9.6 43 165-207 1-44 (162)
269 PRK06547 hypothetical protein; 95.3 0.027 5.8E-07 55.1 5.3 35 173-207 6-40 (172)
270 PLN03186 DNA repair protein RA 95.3 0.097 2.1E-06 57.2 9.9 58 182-240 123-184 (342)
271 TIGR02239 recomb_RAD51 DNA rep 95.3 0.11 2.3E-06 56.6 10.2 58 181-239 95-156 (316)
272 PTZ00035 Rad51 protein; Provis 95.2 0.15 3.3E-06 55.9 11.2 57 182-239 118-178 (337)
273 TIGR00554 panK_bact pantothena 95.2 0.11 2.4E-06 55.2 9.8 28 180-207 60-87 (290)
274 COG1102 Cmk Cytidylate kinase 95.2 0.029 6.3E-07 52.0 4.6 45 184-241 2-46 (179)
275 PRK00149 dnaA chromosomal repl 95.1 0.22 4.8E-06 57.7 13.1 39 182-220 148-186 (450)
276 cd01135 V_A-ATPase_B V/A-type 95.1 0.11 2.5E-06 54.0 9.5 92 181-272 68-177 (276)
277 TIGR02639 ClpA ATP-dependent C 95.1 0.073 1.6E-06 65.5 9.6 103 161-273 454-565 (731)
278 PRK14974 cell division protein 95.1 0.18 3.9E-06 54.9 11.4 88 181-272 139-233 (336)
279 PF07728 AAA_5: AAA domain (dy 95.1 0.044 9.5E-07 51.9 6.1 76 185-273 2-77 (139)
280 TIGR01243 CDC48 AAA family ATP 95.1 0.065 1.4E-06 66.2 9.1 92 161-272 178-282 (733)
281 KOG2123 Uncharacterized conser 95.1 0.0034 7.4E-08 63.1 -1.6 105 513-630 18-123 (388)
282 PF12061 DUF3542: Protein of u 95.1 0.056 1.2E-06 55.4 6.8 63 37-99 311-373 (402)
283 PRK05703 flhF flagellar biosyn 95.1 0.13 2.7E-06 58.5 10.5 86 182-270 221-308 (424)
284 COG1419 FlhF Flagellar GTP-bin 95.1 0.19 4.2E-06 54.8 11.3 87 181-270 202-290 (407)
285 KOG0729 26S proteasome regulat 95.0 0.093 2E-06 52.5 8.0 92 161-272 177-281 (435)
286 KOG1532 GTPase XAB1, interacts 95.0 0.17 3.7E-06 51.1 9.8 62 181-242 18-88 (366)
287 PRK12724 flagellar biosynthesi 95.0 0.1 2.2E-06 57.8 9.2 84 182-269 223-307 (432)
288 COG0470 HolB ATPase involved i 95.0 0.11 2.4E-06 57.7 9.8 46 163-208 3-50 (325)
289 PF02562 PhoH: PhoH-like prote 95.0 0.037 8.1E-07 55.2 5.2 53 165-219 4-56 (205)
290 PRK04301 radA DNA repair and r 95.0 0.17 3.8E-06 55.4 11.0 57 182-239 102-162 (317)
291 PF00006 ATP-synt_ab: ATP synt 95.0 0.083 1.8E-06 53.5 7.8 95 173-271 5-115 (215)
292 KOG0735 AAA+-type ATPase [Post 94.9 0.084 1.8E-06 60.6 8.4 74 182-273 431-506 (952)
293 PRK11034 clpA ATP-dependent Cl 94.9 0.068 1.5E-06 64.9 8.2 102 162-273 459-569 (758)
294 PF13238 AAA_18: AAA domain; P 94.9 0.022 4.7E-07 53.1 3.3 22 185-206 1-22 (129)
295 cd02025 PanK Pantothenate kina 94.9 0.12 2.5E-06 53.2 8.8 24 184-207 1-24 (220)
296 PRK13531 regulatory ATPase Rav 94.9 0.039 8.4E-07 62.1 5.6 51 161-213 20-70 (498)
297 PRK07667 uridine kinase; Provi 94.9 0.043 9.4E-07 55.2 5.5 38 171-208 4-43 (193)
298 cd01121 Sms Sms (bacterial rad 94.9 0.09 2E-06 58.3 8.4 85 182-271 82-168 (372)
299 COG0563 Adk Adenylate kinase a 94.9 0.064 1.4E-06 52.7 6.5 25 184-208 2-26 (178)
300 PRK14721 flhF flagellar biosyn 94.9 0.17 3.6E-06 56.8 10.5 88 181-270 190-278 (420)
301 PRK06835 DNA replication prote 94.9 0.11 2.4E-06 56.5 8.9 37 182-220 183-219 (329)
302 cd02019 NK Nucleoside/nucleoti 94.8 0.025 5.5E-07 45.6 3.1 23 184-206 1-23 (69)
303 TIGR01359 UMP_CMP_kin_fam UMP- 94.8 0.07 1.5E-06 53.4 7.0 24 184-207 1-24 (183)
304 cd03115 SRP The signal recogni 94.8 0.12 2.6E-06 51.0 8.6 26 184-209 2-27 (173)
305 KOG0744 AAA+-type ATPase [Post 94.8 0.062 1.4E-06 55.6 6.4 39 183-221 178-218 (423)
306 COG3640 CooC CO dehydrogenase 94.8 0.058 1.3E-06 53.6 5.9 42 184-226 2-43 (255)
307 PF10443 RNA12: RNA12 protein; 94.8 0.95 2.1E-05 50.0 15.7 67 166-238 1-71 (431)
308 PF05659 RPW8: Arabidopsis bro 94.8 0.5 1.1E-05 44.4 11.8 111 8-134 3-114 (147)
309 CHL00195 ycf46 Ycf46; Provisio 94.8 0.11 2.5E-06 59.6 9.2 92 161-272 228-329 (489)
310 TIGR03877 thermo_KaiC_1 KaiC d 94.8 0.22 4.8E-06 52.0 10.7 53 181-238 20-72 (237)
311 PF00560 LRR_1: Leucine Rich R 94.7 0.015 3.2E-07 34.5 1.1 22 542-563 1-22 (22)
312 PF00485 PRK: Phosphoribulokin 94.7 0.029 6.3E-07 56.6 3.9 26 184-209 1-26 (194)
313 PRK06995 flhF flagellar biosyn 94.7 0.14 3E-06 58.3 9.5 60 182-241 256-316 (484)
314 TIGR00959 ffh signal recogniti 94.6 0.42 9.1E-06 54.0 13.1 89 181-271 98-192 (428)
315 PRK14723 flhF flagellar biosyn 94.6 0.15 3.2E-06 61.2 9.8 88 182-271 185-273 (767)
316 TIGR00064 ftsY signal recognit 94.6 0.28 6.1E-06 52.1 11.1 89 180-271 70-164 (272)
317 PRK12597 F0F1 ATP synthase sub 94.6 0.14 3.1E-06 57.9 9.3 91 181-272 142-248 (461)
318 COG0541 Ffh Signal recognition 94.5 4.4 9.4E-05 44.8 19.7 88 181-270 99-191 (451)
319 PF06309 Torsin: Torsin; Inte 94.5 0.084 1.8E-06 47.5 5.7 45 162-206 26-77 (127)
320 PF13306 LRR_5: Leucine rich r 94.5 0.049 1.1E-06 50.7 4.7 81 512-599 10-91 (129)
321 COG1428 Deoxynucleoside kinase 94.5 0.069 1.5E-06 52.4 5.6 49 182-235 4-52 (216)
322 PF12775 AAA_7: P-loop contain 94.5 0.018 3.9E-07 61.1 1.8 90 171-273 23-112 (272)
323 PRK05480 uridine/cytidine kina 94.5 0.037 8.1E-07 56.6 4.1 27 180-206 4-30 (209)
324 KOG3347 Predicted nucleotide k 94.5 0.035 7.5E-07 50.6 3.3 33 183-222 8-40 (176)
325 PRK05439 pantothenate kinase; 94.5 0.25 5.5E-06 52.9 10.4 81 180-262 84-166 (311)
326 PTZ00301 uridine kinase; Provi 94.5 0.039 8.4E-07 55.8 4.1 26 182-207 3-28 (210)
327 PRK05342 clpX ATP-dependent pr 94.5 0.087 1.9E-06 59.3 7.2 47 161-207 71-133 (412)
328 TIGR03346 chaperone_ClpB ATP-d 94.4 0.14 3.1E-06 64.1 9.8 106 161-273 565-679 (852)
329 TIGR00390 hslU ATP-dependent p 94.4 0.11 2.5E-06 57.2 7.7 77 161-237 12-104 (441)
330 PF13671 AAA_33: AAA domain; P 94.4 0.036 7.8E-07 52.8 3.6 24 184-207 1-24 (143)
331 PRK08233 hypothetical protein; 94.4 0.037 7.9E-07 55.3 3.8 26 182-207 3-28 (182)
332 PF13306 LRR_5: Leucine rich r 94.4 0.12 2.6E-06 48.1 7.1 59 833-895 9-67 (129)
333 COG4608 AppF ABC-type oligopep 94.4 0.12 2.6E-06 53.0 7.4 89 181-272 38-138 (268)
334 PTZ00088 adenylate kinase 1; P 94.4 0.065 1.4E-06 55.1 5.6 24 184-207 8-31 (229)
335 COG0572 Udk Uridine kinase [Nu 94.4 0.042 9E-07 54.7 3.9 29 181-209 7-35 (218)
336 TIGR00235 udk uridine kinase. 94.4 0.041 8.8E-07 56.2 4.1 28 180-207 4-31 (207)
337 PF00154 RecA: recA bacterial 94.4 0.3 6.5E-06 52.4 10.6 84 182-273 53-143 (322)
338 COG4088 Predicted nucleotide k 94.4 0.14 2.9E-06 49.7 7.0 27 183-209 2-28 (261)
339 COG0468 RecA RecA/RadA recombi 94.4 0.24 5.1E-06 52.1 9.6 49 181-231 59-107 (279)
340 PRK04296 thymidine kinase; Pro 94.3 0.078 1.7E-06 53.1 5.9 83 183-271 3-88 (190)
341 PRK10463 hydrogenase nickel in 94.3 0.22 4.7E-06 52.5 9.2 94 173-272 95-195 (290)
342 PF03205 MobB: Molybdopterin g 94.3 0.047 1E-06 51.3 4.0 39 183-222 1-39 (140)
343 PRK04328 hypothetical protein; 94.3 0.24 5.3E-06 52.0 9.8 54 181-239 22-75 (249)
344 PRK06964 DNA polymerase III su 94.3 1.3 2.8E-05 48.5 15.4 26 182-207 21-46 (342)
345 KOG3864 Uncharacterized conser 94.3 0.0091 2E-07 57.5 -0.9 35 970-1005 151-185 (221)
346 COG2812 DnaX DNA polymerase II 94.2 0.25 5.3E-06 56.5 10.1 167 161-335 16-215 (515)
347 PRK03839 putative kinase; Prov 94.2 0.041 8.9E-07 54.8 3.6 25 184-208 2-26 (180)
348 PRK06067 flagellar accessory p 94.2 0.3 6.6E-06 51.0 10.3 53 181-238 24-76 (234)
349 PF01583 APS_kinase: Adenylyls 94.1 0.065 1.4E-06 50.8 4.5 36 182-219 2-37 (156)
350 COG0464 SpoVK ATPases of the A 94.1 0.32 6.9E-06 57.3 11.4 28 181-208 275-302 (494)
351 PRK00625 shikimate kinase; Pro 94.1 0.042 9.2E-07 53.7 3.4 24 184-207 2-25 (173)
352 PRK06762 hypothetical protein; 94.1 0.048 1E-06 53.5 3.9 24 183-206 3-26 (166)
353 cd01124 KaiC KaiC is a circadi 94.1 0.22 4.7E-06 49.9 8.7 45 184-232 1-45 (187)
354 PRK04040 adenylate kinase; Pro 94.1 0.048 1E-06 54.3 3.7 25 183-207 3-27 (188)
355 PF00910 RNA_helicase: RNA hel 94.1 0.042 9.1E-07 49.0 3.0 24 185-208 1-24 (107)
356 PRK08972 fliI flagellum-specif 94.0 0.15 3.3E-06 56.8 7.9 88 181-272 161-263 (444)
357 TIGR01360 aden_kin_iso1 adenyl 94.0 0.049 1.1E-06 54.8 3.8 26 181-206 2-27 (188)
358 PRK13765 ATP-dependent proteas 94.0 0.1 2.2E-06 61.9 6.8 76 160-239 30-105 (637)
359 TIGR03305 alt_F1F0_F1_bet alte 94.0 0.23 5E-06 55.9 9.2 91 181-272 137-243 (449)
360 CHL00095 clpC Clp protease ATP 94.0 0.17 3.6E-06 63.2 9.1 106 161-273 509-623 (821)
361 PRK06217 hypothetical protein; 94.0 0.093 2E-06 52.3 5.6 34 184-218 3-38 (183)
362 KOG0735 AAA+-type ATPase [Post 94.0 0.31 6.7E-06 56.2 10.0 92 161-273 667-772 (952)
363 PF13481 AAA_25: AAA domain; P 93.9 0.24 5.3E-06 49.9 8.6 41 183-223 33-81 (193)
364 cd02027 APSK Adenosine 5'-phos 93.9 0.26 5.6E-06 47.1 8.3 24 184-207 1-24 (149)
365 KOG0726 26S proteasome regulat 93.9 0.36 7.8E-06 49.3 9.3 93 159-272 183-289 (440)
366 TIGR00150 HI0065_YjeE ATPase, 93.9 0.1 2.3E-06 48.0 5.2 28 181-208 21-48 (133)
367 KOG0743 AAA+-type ATPase [Post 93.8 5.3 0.00012 44.3 18.7 25 183-207 236-260 (457)
368 TIGR02640 gas_vesic_GvpN gas v 93.8 0.18 3.9E-06 53.5 7.7 56 168-230 9-64 (262)
369 PF07724 AAA_2: AAA domain (Cd 93.8 0.079 1.7E-06 51.8 4.5 41 182-223 3-43 (171)
370 PRK10751 molybdopterin-guanine 93.8 0.07 1.5E-06 51.7 4.1 29 181-209 5-33 (173)
371 KOG0728 26S proteasome regulat 93.8 0.34 7.4E-06 48.2 8.7 89 165-273 151-252 (404)
372 TIGR00764 lon_rel lon-related 93.7 0.15 3.3E-06 60.7 7.7 75 161-239 18-92 (608)
373 PRK04132 replication factor C 93.7 0.94 2E-05 55.4 14.2 132 190-338 574-729 (846)
374 COG1066 Sms Predicted ATP-depe 93.7 0.18 4E-06 54.5 7.3 86 182-273 93-180 (456)
375 cd01122 GP4d_helicase GP4d_hel 93.7 0.37 8E-06 51.7 10.0 52 182-236 30-81 (271)
376 TIGR00382 clpX endopeptidase C 93.6 0.21 4.6E-06 55.9 8.1 47 161-207 77-141 (413)
377 PRK13949 shikimate kinase; Pro 93.6 0.11 2.4E-06 50.8 5.3 25 183-207 2-26 (169)
378 PRK08927 fliI flagellum-specif 93.6 0.42 9.1E-06 53.7 10.3 88 181-272 157-259 (442)
379 PRK06851 hypothetical protein; 93.6 0.96 2.1E-05 49.7 12.9 43 180-223 212-254 (367)
380 PF07726 AAA_3: ATPase family 93.6 0.042 9.1E-07 49.5 2.0 25 185-209 2-26 (131)
381 COG2019 AdkA Archaeal adenylat 93.5 0.078 1.7E-06 49.5 3.6 25 182-206 4-28 (189)
382 PF13245 AAA_19: Part of AAA d 93.5 0.22 4.9E-06 40.9 6.0 26 181-206 9-35 (76)
383 COG1224 TIP49 DNA helicase TIP 93.4 0.15 3.3E-06 53.7 6.1 54 159-212 37-95 (450)
384 PRK09519 recA DNA recombinatio 93.4 0.34 7.5E-06 58.3 9.8 84 182-272 60-149 (790)
385 PF08433 KTI12: Chromatin asso 93.4 0.095 2.1E-06 55.3 4.6 26 183-208 2-27 (270)
386 PF03308 ArgK: ArgK protein; 93.4 0.21 4.5E-06 51.1 6.8 65 169-233 14-80 (266)
387 PRK08149 ATP synthase SpaL; Va 93.4 0.24 5.2E-06 55.5 7.9 88 181-272 150-252 (428)
388 PRK09280 F0F1 ATP synthase sub 93.3 0.55 1.2E-05 53.1 10.7 91 181-272 143-249 (463)
389 PRK10733 hflB ATP-dependent me 93.3 0.58 1.3E-05 56.6 11.7 26 183-208 186-211 (644)
390 TIGR02030 BchI-ChlI magnesium 93.3 0.13 2.7E-06 56.2 5.6 46 161-206 4-49 (337)
391 PF13504 LRR_7: Leucine rich r 93.3 0.05 1.1E-06 29.9 1.3 15 542-556 2-16 (17)
392 cd02024 NRK1 Nicotinamide ribo 93.3 0.065 1.4E-06 53.0 3.0 23 184-206 1-23 (187)
393 COG1936 Predicted nucleotide k 93.3 0.065 1.4E-06 50.6 2.8 20 184-203 2-21 (180)
394 TIGR03878 thermo_KaiC_2 KaiC d 93.2 0.46 1E-05 50.2 9.6 40 181-222 35-74 (259)
395 PRK11823 DNA repair protein Ra 93.2 0.24 5.2E-06 56.8 7.9 85 182-271 80-166 (446)
396 PF08298 AAA_PrkA: PrkA AAA do 93.2 0.16 3.4E-06 54.6 5.9 78 161-243 61-151 (358)
397 CHL00081 chlI Mg-protoporyphyr 93.2 0.12 2.7E-06 56.3 5.3 47 161-207 17-63 (350)
398 cd02023 UMPK Uridine monophosp 93.1 0.065 1.4E-06 54.3 2.9 23 184-206 1-23 (198)
399 TIGR02322 phosphon_PhnN phosph 93.1 0.078 1.7E-06 52.8 3.4 25 183-207 2-26 (179)
400 TIGR03575 selen_PSTK_euk L-ser 93.1 0.38 8.3E-06 52.3 8.8 35 185-220 2-36 (340)
401 TIGR03574 selen_PSTK L-seryl-t 93.1 0.25 5.4E-06 52.1 7.4 24 185-208 2-25 (249)
402 PRK00131 aroK shikimate kinase 93.1 0.091 2E-06 52.1 3.8 26 182-207 4-29 (175)
403 PRK00889 adenylylsulfate kinas 93.0 0.11 2.4E-06 51.5 4.3 28 181-208 3-30 (175)
404 PRK13768 GTPase; Provisional 93.0 0.6 1.3E-05 49.1 10.1 37 182-220 2-38 (253)
405 PRK12678 transcription termina 93.0 0.38 8.3E-06 54.9 8.7 99 173-272 406-514 (672)
406 COG1703 ArgK Putative periplas 93.0 0.21 4.6E-06 51.7 6.2 64 171-234 38-103 (323)
407 cd02020 CMPK Cytidine monophos 93.0 0.079 1.7E-06 50.7 3.1 24 184-207 1-24 (147)
408 TIGR00176 mobB molybdopterin-g 93.0 0.14 3E-06 49.2 4.7 33 184-217 1-33 (155)
409 cd01132 F1_ATPase_alpha F1 ATP 93.0 0.6 1.3E-05 48.8 9.6 88 181-272 68-172 (274)
410 PRK15453 phosphoribulokinase; 92.9 0.62 1.3E-05 48.7 9.6 28 180-207 3-30 (290)
411 COG1124 DppF ABC-type dipeptid 92.9 0.082 1.8E-06 53.0 3.1 27 181-207 32-58 (252)
412 PRK06731 flhF flagellar biosyn 92.9 0.94 2E-05 47.8 11.2 128 181-310 74-209 (270)
413 COG0593 DnaA ATPase involved i 92.9 2.1 4.6E-05 47.5 14.3 178 181-362 112-316 (408)
414 PTZ00185 ATPase alpha subunit; 92.9 0.73 1.6E-05 52.1 10.7 93 181-273 188-301 (574)
415 PRK13947 shikimate kinase; Pro 92.9 0.081 1.8E-06 52.2 3.2 25 184-208 3-27 (171)
416 cd02028 UMPK_like Uridine mono 92.9 0.087 1.9E-06 52.1 3.4 25 184-208 1-25 (179)
417 KOG3864 Uncharacterized conser 92.9 0.009 2E-07 57.6 -3.4 43 943-985 149-191 (221)
418 PF00158 Sigma54_activat: Sigm 92.9 0.32 6.9E-06 47.4 7.1 44 163-207 1-47 (168)
419 TIGR00041 DTMP_kinase thymidyl 92.9 0.74 1.6E-05 46.5 10.2 27 183-209 4-30 (195)
420 cd02029 PRK_like Phosphoribulo 92.8 0.47 1E-05 49.1 8.5 25 184-208 1-25 (277)
421 TIGR00416 sms DNA repair prote 92.8 0.32 7E-06 55.7 8.3 86 182-272 94-181 (454)
422 COG0003 ArsA Predicted ATPase 92.8 0.22 4.9E-06 53.6 6.5 49 182-232 2-50 (322)
423 COG0465 HflB ATP-dependent Zn 92.8 0.17 3.6E-06 58.7 5.8 93 161-273 150-254 (596)
424 cd00544 CobU Adenosylcobinamid 92.8 0.39 8.5E-06 46.7 7.6 37 185-226 2-38 (169)
425 PF06745 KaiC: KaiC; InterPro 92.8 0.28 6.1E-06 50.9 7.2 47 182-232 19-66 (226)
426 COG1763 MobB Molybdopterin-gua 92.8 0.11 2.3E-06 49.6 3.6 29 182-210 2-30 (161)
427 TIGR01040 V-ATPase_V1_B V-type 92.8 0.37 8.1E-06 54.0 8.2 92 181-272 140-258 (466)
428 COG0714 MoxR-like ATPases [Gen 92.8 0.24 5.2E-06 54.7 6.9 65 163-234 26-90 (329)
429 PRK13234 nifH nitrogenase redu 92.7 0.16 3.4E-06 55.0 5.3 41 181-223 3-43 (295)
430 PRK05201 hslU ATP-dependent pr 92.7 0.34 7.3E-06 53.6 7.7 77 161-237 15-107 (443)
431 TIGR00073 hypB hydrogenase acc 92.7 0.13 2.7E-06 52.6 4.3 32 176-207 16-47 (207)
432 PRK06002 fliI flagellum-specif 92.7 0.42 9.2E-06 53.7 8.7 89 181-272 164-265 (450)
433 cd00227 CPT Chloramphenicol (C 92.7 0.1 2.2E-06 51.7 3.5 25 183-207 3-27 (175)
434 PF13504 LRR_7: Leucine rich r 92.7 0.067 1.4E-06 29.4 1.2 17 564-581 1-17 (17)
435 TIGR01041 ATP_syn_B_arch ATP s 92.6 0.52 1.1E-05 53.5 9.4 92 181-272 140-249 (458)
436 PF03193 DUF258: Protein of un 92.6 0.17 3.6E-06 48.3 4.7 34 170-206 26-59 (161)
437 PF00625 Guanylate_kin: Guanyl 92.6 0.14 3E-06 51.1 4.4 37 182-220 2-38 (183)
438 PRK13407 bchI magnesium chelat 92.6 0.15 3.3E-06 55.4 5.0 46 161-206 8-53 (334)
439 TIGR02655 circ_KaiC circadian 92.6 0.52 1.1E-05 55.0 9.8 54 181-239 262-315 (484)
440 PF08477 Miro: Miro-like prote 92.6 0.11 2.3E-06 47.6 3.3 23 185-207 2-24 (119)
441 PF13086 AAA_11: AAA domain; P 92.6 0.28 6E-06 51.3 6.9 35 170-206 7-41 (236)
442 cd00820 PEPCK_HprK Phosphoenol 92.5 0.11 2.5E-06 45.5 3.1 22 182-203 15-36 (107)
443 cd01134 V_A-ATPase_A V/A-type 92.5 0.91 2E-05 49.0 10.4 58 173-234 147-206 (369)
444 TIGR00750 lao LAO/AO transport 92.5 0.46 1E-05 51.6 8.6 31 179-209 31-61 (300)
445 PF03215 Rad17: Rad17 cell cyc 92.5 0.18 3.9E-06 58.4 5.7 50 167-220 25-79 (519)
446 TIGR01650 PD_CobS cobaltochela 92.5 0.41 8.8E-06 51.4 7.8 62 163-231 47-108 (327)
447 COG0467 RAD55 RecA-superfamily 92.5 0.19 4.1E-06 53.4 5.5 54 181-239 22-75 (260)
448 KOG2228 Origin recognition com 92.5 0.66 1.4E-05 48.8 8.9 110 162-273 25-149 (408)
449 cd02021 GntK Gluconate kinase 92.5 0.096 2.1E-06 50.3 2.9 23 184-206 1-23 (150)
450 PRK13695 putative NTPase; Prov 92.4 0.19 4.1E-06 49.7 5.0 34 184-218 2-35 (174)
451 TIGR03263 guanyl_kin guanylate 92.4 0.098 2.1E-06 52.1 3.0 24 183-206 2-25 (180)
452 cd01136 ATPase_flagellum-secre 92.4 0.58 1.2E-05 50.6 8.9 88 181-272 68-170 (326)
453 PRK14530 adenylate kinase; Pro 92.4 0.12 2.5E-06 53.2 3.6 25 183-207 4-28 (215)
454 TIGR01039 atpD ATP synthase, F 92.3 0.69 1.5E-05 52.1 9.7 91 181-272 142-248 (461)
455 PRK06936 type III secretion sy 92.3 0.62 1.3E-05 52.4 9.3 88 181-272 161-263 (439)
456 TIGR01287 nifH nitrogenase iro 92.3 0.12 2.7E-06 55.5 3.8 40 183-224 1-40 (275)
457 cd00464 SK Shikimate kinase (S 92.3 0.12 2.6E-06 49.8 3.4 23 185-207 2-24 (154)
458 KOG0651 26S proteasome regulat 92.2 0.36 7.7E-06 50.1 6.6 29 181-209 165-193 (388)
459 PRK14529 adenylate kinase; Pro 92.2 0.4 8.7E-06 48.8 7.1 24 185-208 3-26 (223)
460 COG1116 TauB ABC-type nitrate/ 92.2 0.12 2.6E-06 52.3 3.2 26 181-206 28-53 (248)
461 PF02374 ArsA_ATPase: Anion-tr 92.2 0.26 5.6E-06 53.4 6.0 46 183-230 2-47 (305)
462 PRK08699 DNA polymerase III su 92.1 1.3 2.8E-05 48.4 11.4 25 183-207 22-46 (325)
463 COG0237 CoaE Dephospho-CoA kin 92.1 0.41 9E-06 47.9 7.0 23 182-204 2-24 (201)
464 PRK05922 type III secretion sy 92.1 0.63 1.4E-05 52.3 9.1 88 181-272 156-258 (434)
465 cd00071 GMPK Guanosine monopho 92.1 0.11 2.4E-06 48.8 2.7 23 184-206 1-23 (137)
466 TIGR02902 spore_lonB ATP-depen 92.1 0.17 3.7E-06 59.5 4.9 47 161-207 65-111 (531)
467 PRK05057 aroK shikimate kinase 92.1 0.14 3E-06 50.3 3.6 26 182-207 4-29 (172)
468 PRK12339 2-phosphoglycerate ki 92.1 0.15 3.3E-06 51.1 3.9 26 182-207 3-28 (197)
469 PRK00300 gmk guanylate kinase; 92.0 0.13 2.9E-06 52.4 3.6 26 181-206 4-29 (205)
470 TIGR03324 alt_F1F0_F1_al alter 92.0 0.58 1.3E-05 53.2 8.7 89 181-273 161-266 (497)
471 PRK10078 ribose 1,5-bisphospho 92.0 0.12 2.6E-06 51.7 3.1 24 183-206 3-26 (186)
472 PRK13236 nitrogenase reductase 92.0 0.17 3.7E-06 54.8 4.5 31 179-209 3-33 (296)
473 PRK13975 thymidylate kinase; P 92.0 0.15 3.2E-06 51.7 3.8 26 183-208 3-28 (196)
474 CHL00060 atpB ATP synthase CF1 92.0 0.65 1.4E-05 52.7 9.1 91 181-272 160-273 (494)
475 TIGR03496 FliI_clade1 flagella 91.9 0.49 1.1E-05 53.1 8.0 88 181-272 136-238 (411)
476 COG0703 AroK Shikimate kinase 91.9 0.14 3E-06 49.1 3.1 27 183-209 3-29 (172)
477 cd02117 NifH_like This family 91.9 0.16 3.5E-06 52.1 3.9 27 183-209 1-27 (212)
478 PF13604 AAA_30: AAA domain; P 91.8 0.34 7.4E-06 48.8 6.1 37 173-209 9-45 (196)
479 PRK09099 type III secretion sy 91.8 0.49 1.1E-05 53.4 7.9 90 180-272 161-264 (441)
480 cd01672 TMPK Thymidine monopho 91.8 0.44 9.6E-06 48.3 7.2 25 184-208 2-26 (200)
481 PF03266 NTPase_1: NTPase; In 91.8 0.17 3.6E-06 49.3 3.7 24 185-208 2-25 (168)
482 PRK03846 adenylylsulfate kinas 91.8 0.25 5.4E-06 50.0 5.2 28 180-207 22-49 (198)
483 PF10662 PduV-EutP: Ethanolami 91.8 0.14 3E-06 47.5 3.0 24 183-206 2-25 (143)
484 PRK07196 fliI flagellum-specif 91.8 0.61 1.3E-05 52.4 8.5 90 180-273 153-257 (434)
485 PRK04196 V-type ATP synthase s 91.7 0.68 1.5E-05 52.7 8.9 91 181-272 142-251 (460)
486 PF00142 Fer4_NifH: 4Fe-4S iro 91.7 0.38 8.3E-06 49.3 6.2 41 183-225 1-41 (273)
487 PF03029 ATP_bind_1: Conserved 91.7 0.15 3.3E-06 52.9 3.4 33 187-221 1-33 (238)
488 cd03116 MobB Molybdenum is an 91.6 0.27 5.8E-06 47.3 4.8 27 183-209 2-28 (159)
489 PRK13948 shikimate kinase; Pro 91.6 0.18 3.8E-06 49.8 3.7 28 180-207 8-35 (182)
490 PF01078 Mg_chelatase: Magnesi 91.6 0.31 6.8E-06 48.4 5.4 42 161-204 3-44 (206)
491 PRK13946 shikimate kinase; Pro 91.6 0.15 3.2E-06 50.9 3.2 26 183-208 11-36 (184)
492 PRK08472 fliI flagellum-specif 91.6 0.62 1.4E-05 52.4 8.3 86 180-272 155-257 (434)
493 cd02040 NifH NifH gene encodes 91.5 0.32 6.8E-06 52.2 6.0 43 183-227 2-44 (270)
494 TIGR01313 therm_gnt_kin carboh 91.5 0.13 2.9E-06 50.1 2.8 22 185-206 1-22 (163)
495 PRK14493 putative bifunctional 91.5 0.19 4E-06 53.2 4.0 35 183-220 2-36 (274)
496 PRK05688 fliI flagellum-specif 91.5 0.66 1.4E-05 52.3 8.4 88 181-272 167-269 (451)
497 cd01878 HflX HflX subfamily. 91.5 0.57 1.2E-05 47.7 7.5 27 180-206 39-65 (204)
498 PRK00279 adk adenylate kinase; 91.5 0.86 1.9E-05 46.8 8.8 24 184-207 2-25 (215)
499 PF06068 TIP49: TIP49 C-termin 91.4 0.28 6E-06 52.8 5.1 50 160-209 23-77 (398)
500 PRK14737 gmk guanylate kinase; 91.4 0.18 3.8E-06 50.2 3.5 26 181-206 3-28 (186)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-78 Score=721.44 Aligned_cols=572 Identities=29% Similarity=0.463 Sum_probs=462.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHhHhhccc-----------------cc
Q 037935 43 ENLKAEMEKLKAERTSIQRRVSEAKEKGEEIEEKVEKWLVSANGIIDQAAKFVEDEESTNK-----------------RC 105 (1085)
Q Consensus 43 ~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~~~~~~~~~ed~ld~~~~~~~-----------------~~ 105 (1085)
.+.++.+..|++.+..++.++++++.+ +.....+..|...+++++|+++|.++.+..... -|
T Consensus 24 ~~~~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c 102 (889)
T KOG4658|consen 24 DGKDNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLC 102 (889)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHh
Confidence 356667888888888888899999877 344678889999999999999999986642111 01
Q ss_pred ccCcC-CChhHHHHHhHHHHHHHHHHHHHHHhccccccccc-cCCChhhhcccCCCCccccchHHHHHHHHHHhccCCce
Q 037935 106 LKGLC-PNLKTRYQLSKKAETEVKALVELGEEVKKFDIVSH-RTTPEEIWLKSNKGYEAFESRVSTLKSIQNALTDVNVS 183 (1085)
Q Consensus 106 ~~~~~-~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~ 183 (1085)
+.+.+ .....-+.+++++-.+.+.++.+. ....|..+.. ..++....+.|...... +|.+..++++.+.|.+++..
T Consensus 103 ~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~ 180 (889)
T KOG4658|consen 103 LCGFCSKNVSDSYKYGKRVSKVLREVESLG-SKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVG 180 (889)
T ss_pred hhhhHhHhhhhhHhHHHHHHHHHHHHHHhc-cccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCC
Confidence 11111 112222344445555555555442 2222333322 11222233334333333 99999999999999977779
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh-hccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHHHc
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR-EKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDE---AEYRRASRLYERLKN 259 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~l~~ 259 (1085)
+++|+||||+||||||+.++|+.. ++++||.++||.||+.++...++++|+..++...... ........+.+.+ +
T Consensus 181 iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L-~ 259 (889)
T KOG4658|consen 181 IVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLL-E 259 (889)
T ss_pred EEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHh-c
Confidence 999999999999999999999988 9999999999999999999999999999998744322 2233344555555 5
Q ss_pred CCcEEEEEeCCCCcccccccccccCCCCCCcEEEe--------------------cCCCHHHHHHHHHHhcCCC--CCCC
Q 037935 260 ENKILVILDNIWKYLDLDTIGIPFGNDHEGYNFLI--------------------GNLSEEEAWRLFKIMNGDD--VENC 317 (1085)
Q Consensus 260 ~~~~LlvlDdv~~~~~~~~~~~~~~~~~~gs~ilv--------------------~~l~~~~~~~lf~~~~~~~--~~~~ 317 (1085)
+|||+||+||||+..+|+.++.++|...+||+|++ +.|+++|||.||++.+|.. ...+
T Consensus 260 ~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~ 339 (889)
T KOG4658|consen 260 GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHP 339 (889)
T ss_pred cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccc
Confidence 99999999999999999999999999999999998 8899999999999999854 3345
Q ss_pred CchHHHHHHHHHhCCchHHHHHHHHHHhcC-CHHHHHHHHHHhcCCCCCCCCCCcccchhhHHHHHhcCChHHHHHHHHh
Q 037935 318 KFKPTAINVAQACGGLPIALTTVARALRNK-SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLL 396 (1085)
Q Consensus 318 ~~~~~~~~i~~~~~glPlai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~ 396 (1085)
.++++|++++++|+|+|||+.++|+.|+.+ +..+|+++++.+.+....+.+++.+.+++++++||+.|| +++|.||+|
T Consensus 340 ~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~-~~lK~CFLy 418 (889)
T KOG4658|consen 340 DIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLP-EELKSCFLY 418 (889)
T ss_pred cHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhh-HHHHHHHHh
Confidence 589999999999999999999999999955 888999999999888666667778899999999999999 589999999
Q ss_pred ccccCCC--CCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHhHcccceecC---CcceEEEcHHHHHHHHHHhh--
Q 037935 397 CSLIGNS--FYLIDLLRYSMGLGLFHGVNKMEDARNKLYALVHELRDCCLLLEGD---RNETFYMHDVVCDVAVSIAC-- 469 (1085)
Q Consensus 397 ~s~fp~~--i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~---~~~~~~mHdl~~~~~~~~~~-- 469 (1085)
||+||+| |+++.|+.+|+||||+.+....+.+.+.+++|+.+|++++|++..+ +..+|+|||+|||+|.++|+
T Consensus 419 calFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~ 498 (889)
T KOG4658|consen 419 CALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDF 498 (889)
T ss_pred hccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccc
Confidence 9999998 9999999999999999885556666677778899999999998764 45799999999999999999
Q ss_pred ---ccceeEEEec-CccccCCCccccccceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceE
Q 037935 470 ---RDQHVFLVRN-DAVWEWPDGDALKKCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRV 545 (1085)
Q Consensus 470 ---~e~~~~~~~~-~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~ 545 (1085)
+++.++ .. .+....+....+..+|++++.++.+..++....+++|++|.+.+|.. ....++..+|..++.||+
T Consensus 499 ~~~~e~~iv--~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrV 575 (889)
T KOG4658|consen 499 GKQEENQIV--SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRV 575 (889)
T ss_pred cccccceEE--ECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch-hhhhcCHHHHhhCcceEE
Confidence 666333 33 24445566677889999999999999999999999999999999862 156788889999999999
Q ss_pred EEecCC-cccCCchhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCC
Q 037935 546 VDLTRV-RLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQ 624 (1085)
Q Consensus 546 L~Ls~~-~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 624 (1085)
|||++| .+.++|++|++|.|||||+++++ .+..+|.++ ++|..|++||+..+..... .+..+..|+
T Consensus 576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l-~~Lk~L~~Lnl~~~~~l~~-----------~~~i~~~L~ 642 (889)
T KOG4658|consen 576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGL-GNLKKLIYLNLEVTGRLES-----------IPGILLELQ 642 (889)
T ss_pred EECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHH-HHHHhhheecccccccccc-----------ccchhhhcc
Confidence 999977 57889999999999999999999 999999996 9999999999998876322 234466799
Q ss_pred CCcEEEEEecc
Q 037935 625 RLTTLEIDVED 635 (1085)
Q Consensus 625 ~L~~L~l~~~~ 635 (1085)
+|++|.+....
T Consensus 643 ~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 643 SLRVLRLPRSA 653 (889)
T ss_pred cccEEEeeccc
Confidence 99999998765
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.6e-60 Score=599.54 Aligned_cols=668 Identities=21% Similarity=0.286 Sum_probs=468.5
Q ss_pred CCCccccchHHHHHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe---CCC---------
Q 037935 158 KGYEAFESRVSTLKSIQNALT--DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV---SQT--------- 223 (1085)
Q Consensus 158 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~--------- 223 (1085)
.+.+.++||+..++++..++. .+++++|+||||||+||||||+++|+... .+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccc
Confidence 345679999999999998875 56789999999999999999999999876 45988877642 111
Q ss_pred --cC-HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcccccccccccCCCCCCcEEEe------
Q 037935 224 --PD-IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYLDLDTIGIPFGNDHEGYNFLI------ 294 (1085)
Q Consensus 224 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~gs~ilv------ 294 (1085)
++ ...++++++.++....... ......+.+.+ .++|+||||||||+..+|+.+.....+.+.||+|||
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L-~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERL-KHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHH-hCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 01 1234445554442221110 00112344555 499999999999999999998876677788999998
Q ss_pred -------------cCCCHHHHHHHHHHhcCCCC-CCCCchHHHHHHHHHhCCchHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 037935 295 -------------GNLSEEEAWRLFKIMNGDDV-ENCKFKPTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRELQ 360 (1085)
Q Consensus 295 -------------~~l~~~~~~~lf~~~~~~~~-~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~ 360 (1085)
+.+++++||+||+.+||... +..++.+++++|+++|+|+|||++++|++|++++..+|+.++++++
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~ 415 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR 415 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77899999999999997533 3446789999999999999999999999999999999999999886
Q ss_pred CCCCCCCCCCcccchhhHHHHHhcCChHHHHHHHHhccccCCCCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHh
Q 037935 361 TPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFYLIDLLRYSMGLGLFHGVNKMEDARNKLYALVHELR 440 (1085)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~ 440 (1085)
... +.++..+|++||++|+++..|.||+++|+|+.+.+.+. +..|++.+.... ...++.|+
T Consensus 416 ~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~~-----------~~~l~~L~ 476 (1153)
T PLN03210 416 NGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDLDV-----------NIGLKNLV 476 (1153)
T ss_pred hCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCCCc-----------hhChHHHH
Confidence 543 45799999999999986458999999999998876665 556666654321 11278899
Q ss_pred HcccceecCCcceEEEcHHHHHHHHHHhhccceeEEEecCccccCCC---------ccccccceEEEeeccCcccccccC
Q 037935 441 DCCLLLEGDRNETFYMHDVVCDVAVSIACRDQHVFLVRNDAVWEWPD---------GDALKKCYAISLLNSSIHEVSLEF 511 (1085)
Q Consensus 441 ~~~ll~~~~~~~~~~mHdl~~~~~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~r~Lsl~~~~~~~l~~~~ 511 (1085)
++||++.. .+.++|||++|+|+++++.++... .+.+..-|.. .....+++.+++....+.
T Consensus 477 ~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~---~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~------ 545 (1153)
T PLN03210 477 DKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNE---PGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID------ 545 (1153)
T ss_pred hcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCC---CCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc------
Confidence 99999875 357999999999999998765210 0000001111 111223444444332221
Q ss_pred CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcc-------cCCchhhhccc-cccEEeccCcccccccchh
Q 037935 512 ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRL-------FSLPSSIGQLT-KLRMLDLTDCLQLKFIVPN 583 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i-------~~lp~~i~~L~-~L~~L~Ls~~~~l~~lp~~ 583 (1085)
...+....|.+|++|++|.+..+.. ..+|..+..++ +|++|++.++ .++.+|..
T Consensus 546 -----------------~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~ 607 (1153)
T PLN03210 546 -----------------ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSN 607 (1153)
T ss_pred -----------------eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCc
Confidence 1223445577777777777765432 13566666553 4777777777 77777765
Q ss_pred hhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEecc-CCCCCCcccccccceeeEEecCCCccc
Q 037935 584 ILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVED-DSILPDGLFTKKLERFDISIGDGSFDS 662 (1085)
Q Consensus 584 ~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~ 662 (1085)
+ ...+|++|++.+|.+.. .+..+..+++|+.|+++++. +..+
T Consensus 608 f--~~~~L~~L~L~~s~l~~------------L~~~~~~l~~Lk~L~Ls~~~~l~~i----------------------- 650 (1153)
T PLN03210 608 F--RPENLVKLQMQGSKLEK------------LWDGVHSLTGLRNIDLRGSKNLKEI----------------------- 650 (1153)
T ss_pred C--CccCCcEEECcCccccc------------cccccccCCCCCEEECCCCCCcCcC-----------------------
Confidence 3 46777777777776532 22334556666766665442 2211
Q ss_pred ccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchhhHhhcccccE
Q 037935 663 TKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQH 742 (1085)
Q Consensus 663 ~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~ 742 (1085)
|. ++.+++|+.|+|++|..+..+|. .++.+++|+.
T Consensus 651 ------------------------------------------p~-ls~l~~Le~L~L~~c~~L~~lp~--si~~L~~L~~ 685 (1153)
T PLN03210 651 ------------------------------------------PD-LSMATNLETLKLSDCSSLVELPS--SIQYLNKLED 685 (1153)
T ss_pred ------------------------------------------Cc-cccCCcccEEEecCCCCccccch--hhhccCCCCE
Confidence 21 34567999999999999988743 5899999999
Q ss_pred EEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCC
Q 037935 743 LEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGV 822 (1085)
Q Consensus 743 L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~ 822 (1085)
|++++|..++.++... .+++|+.|.+++|..+..++. ..++|+.|.+.++. +..+|..
T Consensus 686 L~L~~c~~L~~Lp~~i---------~l~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~n~-i~~lP~~------- 743 (1153)
T PLN03210 686 LDMSRCENLEILPTGI---------NLKSLYRLNLSGCSRLKSFPD-----ISTNISWLDLDETA-IEEFPSN------- 743 (1153)
T ss_pred EeCCCCCCcCccCCcC---------CCCCCCEEeCCCCCCcccccc-----ccCCcCeeecCCCc-ccccccc-------
Confidence 9999999887765432 378999999999987766532 24678888887764 3333311
Q ss_pred CCCCCcccccccCCccceeeeccCCceeeeccc-----CCcCccCCceEEEecCC-cccccchhHHhhccccceEEeecc
Q 037935 823 PAQQPLFSFKKILPNLEGLALSGKDITMILQDD-----FPQHLFGSLKQLRVGDD-DLACFPLDLLERFHNLEFLYLSDC 896 (1085)
Q Consensus 823 ~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~-----~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~~ 896 (1085)
..+++|+.|+++++....++... .....+++|+.|++++| .+..+|. .++++++|+.|++++|
T Consensus 744 ----------~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 744 ----------LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENC 812 (1153)
T ss_pred ----------ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh-hhhCCCCCCEEECCCC
Confidence 13678888888875532221110 00112468899999855 4556664 4678899999999988
Q ss_pred c-ccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEE
Q 037935 897 S-YEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRL 975 (1085)
Q Consensus 897 ~-l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L 975 (1085)
. +..++... .+++|+.|++++|..++.++. .+.+|+.|+++++ .+..+ |.++..+++|+.|
T Consensus 813 ~~L~~LP~~~--------~L~sL~~L~Ls~c~~L~~~p~--------~~~nL~~L~Ls~n-~i~~i-P~si~~l~~L~~L 874 (1153)
T PLN03210 813 INLETLPTGI--------NLESLESLDLSGCSRLRTFPD--------ISTNISDLNLSRT-GIEEV-PWWIEKFSNLSFL 874 (1153)
T ss_pred CCcCeeCCCC--------CccccCEEECCCCCccccccc--------cccccCEeECCCC-CCccC-hHHHhcCCCCCEE
Confidence 7 66554221 467889999999988877754 3468888888876 56554 4567888899999
Q ss_pred EeccccCcccccchhhhhhcccccEEEEcCCccccccc
Q 037935 976 ETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVI 1013 (1085)
Q Consensus 976 ~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~ 1013 (1085)
++++|+++..++. ....+++|+.|++++|++++++.
T Consensus 875 ~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 875 DMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ECCCCCCcCccCc--ccccccCCCeeecCCCccccccc
Confidence 9999999888743 35678889999999998887664
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.9e-37 Score=336.41 Aligned_cols=254 Identities=31% Similarity=0.520 Sum_probs=203.3
Q ss_pred hHHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCC-
Q 037935 166 RVSTLKSIQNALTD--VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS- 242 (1085)
Q Consensus 166 r~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 242 (1085)
||.++++|.++|.+ ++.++|+|+||||+||||||++++++...+.+|+.++||.++...+..++++.|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999986 789999999999999999999999997788899999999999999999999999999988743
Q ss_pred ---CchHHHHHHHHHHHHHcCCcEEEEEeCCCCcccccccccccCCCCCCcEEEe--------------------cCCCH
Q 037935 243 ---DEAEYRRASRLYERLKNENKILVILDNIWKYLDLDTIGIPFGNDHEGYNFLI--------------------GNLSE 299 (1085)
Q Consensus 243 ---~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~gs~ilv--------------------~~l~~ 299 (1085)
..+.......+.+.+ .++++||||||||+...|+.+...++....|++||| ++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhh-ccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 223444555666666 488999999999999999999888887777899888 89999
Q ss_pred HHHHHHHHHhcCCCC--CCCCchHHHHHHHHHhCCchHHHHHHHHHHhc-CCHHHHHHHHHHhcCCCCCCCCCCcccchh
Q 037935 300 EEAWRLFKIMNGDDV--ENCKFKPTAINVAQACGGLPIALTTVARALRN-KSLHEWKNALRELQTPSVVNFEGVPAETYS 376 (1085)
Q Consensus 300 ~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~-~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 376 (1085)
+||++||+..++... ..+..++.+++|+++|+|+|||++++|++|+. .+..+|+.+++.+...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999997433 45667889999999999999999999999973 3778999999887655421 2224578999
Q ss_pred hHHHHHhcCChHHHHHHHHhccccCCC--CCHHHHHHHHhhcCCCCCC
Q 037935 377 SIELSFKYLKGEQLKKIFLLCSLIGNS--FYLIDLLRYSMGLGLFHGV 422 (1085)
Q Consensus 377 ~l~~sy~~L~~~~~k~cf~~~s~fp~~--i~~~~li~~w~~~g~~~~~ 422 (1085)
++.+||+.||+ ++|.||+|||+||++ |+++.++++|+++|++...
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999997 799999999999997 8899999999999999753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-33 Score=361.20 Aligned_cols=507 Identities=17% Similarity=0.137 Sum_probs=285.1
Q ss_pred cceEEEeeccCccccc-cc-CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccC-CchhhhccccccEE
Q 037935 493 KCYAISLLNSSIHEVS-LE-FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFS-LPSSIGQLTKLRML 569 (1085)
Q Consensus 493 ~~r~Lsl~~~~~~~l~-~~-~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~L~~L 569 (1085)
+++.|+++++.+.... .. ..+++|++|++++|.. ...+|..+|.++++||+|+|++|+++. +|. +.+++|++|
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~--~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL--SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc--CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 5677777766654332 22 2667777777777653 335666666677777777777776654 342 456677777
Q ss_pred eccCccccc-ccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC-CCCCcc-ccc
Q 037935 570 DLTDCLQLK-FIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS-ILPDGL-FTK 646 (1085)
Q Consensus 570 ~Ls~~~~l~-~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~~~~~~-~l~ 646 (1085)
+|++| .+. .+|.. ++++++|++|++++|.+ ....+..+.++++|++|++++|.+. .+|..+ .++
T Consensus 146 ~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~~n~l-----------~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (968)
T PLN00113 146 DLSNN-MLSGEIPND-IGSFSSLKVLDLGGNVL-----------VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212 (968)
T ss_pred ECcCC-cccccCChH-HhcCCCCCEEECccCcc-----------cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence 77776 554 44444 46677777777776665 2334455666666666666666554 234443 556
Q ss_pred ccceeeEEecCCCcccccccccccccccccccce----------eehhhhhhcccccccccccccCCCCCcccccccccE
Q 037935 647 KLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIY----------IFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTR 716 (1085)
Q Consensus 647 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~----------l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~ 716 (1085)
+|+.|++..+.-.. .+...+....+|+.+. ...+..+..|+.+++..+...+.+|.++..+++|++
T Consensus 213 ~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 288 (968)
T PLN00113 213 SLKWIYLGYNNLSG----EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288 (968)
T ss_pred CccEEECcCCccCC----cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence 66666654322100 0000001111111111 112222333444455444444445555555555666
Q ss_pred EEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCC
Q 037935 717 LIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWP 796 (1085)
Q Consensus 717 L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 796 (1085)
|++++|.....+ +..+..+++|+.|++++|.....++. ....+++|+.|+++++.-....+.. ...++
T Consensus 289 L~Ls~n~l~~~~--p~~~~~l~~L~~L~l~~n~~~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~p~~--l~~~~ 356 (968)
T PLN00113 289 LDLSDNSLSGEI--PELVIQLQNLEILHLFSNNFTGKIPV--------ALTSLPRLQVLQLWSNKFSGEIPKN--LGKHN 356 (968)
T ss_pred EECcCCeeccCC--ChhHcCCCCCcEEECCCCccCCcCCh--------hHhcCCCCCEEECcCCCCcCcCChH--HhCCC
Confidence 666555433332 22355555566666555542211111 0113555666666554322111111 23345
Q ss_pred cccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccc
Q 037935 797 ALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLAC 876 (1085)
Q Consensus 797 ~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 876 (1085)
+|+.|++++|......| .....+++|+.|++++|.+.+..+..+.. +++|+.|++++|+++.
T Consensus 357 ~L~~L~Ls~n~l~~~~p----------------~~~~~~~~L~~L~l~~n~l~~~~p~~~~~--~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 357 NLTVLDLSTNNLTGEIP----------------EGLCSSGNLFKLILFSNSLEGEIPKSLGA--CRSLRRVRLQDNSFSG 418 (968)
T ss_pred CCcEEECCCCeeEeeCC----------------hhHhCcCCCCEEECcCCEecccCCHHHhC--CCCCCEEECcCCEeee
Confidence 55666655553322221 11233566777777777665554444433 6777777777777765
Q ss_pred cchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeeccc
Q 037935 877 FPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQ 956 (1085)
Q Consensus 877 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~ 956 (1085)
..+..+..+++|+.|++++|.+...++ ..+..+++|+.|++++|.-...++... ..++|+.|++++|
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~n~~~~~~p~~~------~~~~L~~L~ls~n- 485 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNNNLQGRIN------SRKWDMPSLQMLSLARNKFFGGLPDSF------GSKRLENLDLSRN- 485 (968)
T ss_pred ECChhHhcCCCCCEEECcCCcccCccC------hhhccCCCCcEEECcCceeeeecCccc------ccccceEEECcCC-
Confidence 544556677777777777777655432 223356778888887765444443311 2467888888887
Q ss_pred cccccCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccccccccccccccceeeccccccc
Q 037935 957 NLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSKLSALS 1036 (1085)
Q Consensus 957 ~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~ 1036 (1085)
++....|..+.++++|++|++++|. +.... +..+..+++|++|++++|. ++...+. ....+++|+.|+
T Consensus 486 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-p~~~~~l~~L~~L~Ls~N~-l~~~~p~---------~~~~l~~L~~L~ 553 (968)
T PLN00113 486 QFSGAVPRKLGSLSELMQLKLSENK-LSGEI-PDELSSCKKLVSLDLSHNQ-LSGQIPA---------SFSEMPVLSQLD 553 (968)
T ss_pred ccCCccChhhhhhhccCEEECcCCc-ceeeC-ChHHcCccCCCEEECCCCc-ccccCCh---------hHhCcccCCEEE
Confidence 4555556667788888888888764 44332 3456678888888888865 3332220 122368888888
Q ss_pred cccccccceecCCCccccCCCcCceeeccCCCcccccCCCc
Q 037935 1037 LFDLDSLTSFSSGNYAFKLPSLQDLWVIGCPKMKLFTKGEL 1077 (1085)
Q Consensus 1037 l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~lp~~~~ 1077 (1085)
+++|+....+|.. ..++++|++|++++|+-...+|..+.
T Consensus 554 Ls~N~l~~~~p~~--l~~l~~L~~l~ls~N~l~~~~p~~~~ 592 (968)
T PLN00113 554 LSQNQLSGEIPKN--LGNVESLVQVNISHNHLHGSLPSTGA 592 (968)
T ss_pred CCCCcccccCChh--HhcCcccCEEeccCCcceeeCCCcch
Confidence 8888766677765 46788889999988887777876544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=2e-31 Score=340.77 Aligned_cols=501 Identities=17% Similarity=0.148 Sum_probs=326.0
Q ss_pred cccceEEEeeccCcc-cccccC--CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCccc-CCchhhhccccc
Q 037935 491 LKKCYAISLLNSSIH-EVSLEF--ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLF-SLPSSIGQLTKL 566 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~~~-~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L 566 (1085)
.+.++.|++++|.+. .+|... .+++|++|++++|.. ...+|. ..+++|++|+|++|.+. .+|..++++++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l--~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF--TGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc--ccccCc---cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 345666666666654 444332 556666666666552 223332 33556666666666655 356666666666
Q ss_pred cEEeccCccccc-ccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC-CCCCcc-
Q 037935 567 RMLDLTDCLQLK-FIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS-ILPDGL- 643 (1085)
Q Consensus 567 ~~L~Ls~~~~l~-~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~~~~~~- 643 (1085)
++|++++| .+. .+|.. ++++++|++|++++|.+ ....+..++++++|++|++++|.+. .+|..+
T Consensus 167 ~~L~L~~n-~l~~~~p~~-~~~l~~L~~L~L~~n~l-----------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 167 KVLDLGGN-VLVGKIPNS-LTNLTSLEFLTLASNQL-----------VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred CEEECccC-cccccCChh-hhhCcCCCeeeccCCCC-----------cCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence 66666666 433 34443 36666666666666655 2333445555666666666655554 233333
Q ss_pred cccccceeeEEecCCCcccccccccccccccccccce----------eehhhhhhcccccccccccccCCCCCccccccc
Q 037935 644 FTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIY----------IFCIVMALELNAINVDEIWHYNQLPAMVPCFQS 713 (1085)
Q Consensus 644 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~----------l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~ 713 (1085)
.+++|+.|++..+.-. ..+...+....+|+.+. ...+..+..|+.+++..+...+.+|.++..+++
T Consensus 234 ~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 309 (968)
T PLN00113 234 GLTSLNHLDLVYNNLT----GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309 (968)
T ss_pred cCCCCCEEECcCceec----cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence 4555555555433210 00111111112222222 223344556778888888777789999999999
Q ss_pred ccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCccc
Q 037935 714 LTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTS 793 (1085)
Q Consensus 714 L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 793 (1085)
|+.|++++|.....+ +..+..+++|+.|++++|.....++.. ...+++|+.|+++++.-....+.. ..
T Consensus 310 L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~--------l~~~~~L~~L~Ls~n~l~~~~p~~--~~ 377 (968)
T PLN00113 310 LEILHLFSNNFTGKI--PVALTSLPRLQVLQLWSNKFSGEIPKN--------LGKHNNLTVLDLSTNNLTGEIPEG--LC 377 (968)
T ss_pred CcEEECCCCccCCcC--ChhHhcCCCCCEEECcCCCCcCcCChH--------HhCCCCCcEEECCCCeeEeeCChh--Hh
Confidence 999999998766655 345889999999999998743332221 225789999999986432222211 23
Q ss_pred CCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCc
Q 037935 794 EWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDD 873 (1085)
Q Consensus 794 ~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 873 (1085)
.+++|+.|.+.++......| .....+++|+.|++++|.+++..+..+.. +++|+.|++++|.
T Consensus 378 ~~~~L~~L~l~~n~l~~~~p----------------~~~~~~~~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~Ls~N~ 439 (968)
T PLN00113 378 SSGNLFKLILFSNSLEGEIP----------------KSLGACRSLRRVRLQDNSFSGELPSEFTK--LPLVYFLDISNNN 439 (968)
T ss_pred CcCCCCEEECcCCEecccCC----------------HHHhCCCCCCEEECcCCEeeeECChhHhc--CCCCCEEECcCCc
Confidence 46789999988876544333 22355899999999999988777666655 8999999999999
Q ss_pred ccccchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhhceeeee
Q 037935 874 LACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVL 953 (1085)
Q Consensus 874 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~ 953 (1085)
++...+..+..+++|+.|++++|.+....+.. ...++|+.|++++|.--..++.. ...+++|+.|+++
T Consensus 440 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-------~~~~~L~~L~ls~n~l~~~~~~~-----~~~l~~L~~L~Ls 507 (968)
T PLN00113 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-------FGSKRLENLDLSRNQFSGAVPRK-----LGSLSELMQLKLS 507 (968)
T ss_pred ccCccChhhccCCCCcEEECcCceeeeecCcc-------cccccceEEECcCCccCCccChh-----hhhhhccCEEECc
Confidence 99877677778999999999999976554321 13468999999985433333321 2357899999999
Q ss_pred ccccccccCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccccccccccccccceeecccc
Q 037935 954 HCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSKLS 1033 (1085)
Q Consensus 954 ~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~ 1033 (1085)
+| .+....|..+.++++|++|+|++|. ++.. .+..+..+++|+.|++++|.....++. ....+++|+
T Consensus 508 ~N-~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~----------~l~~l~~L~ 574 (968)
T PLN00113 508 EN-KLSGEIPDELSSCKKLVSLDLSHNQ-LSGQ-IPASFSEMPVLSQLDLSQNQLSGEIPK----------NLGNVESLV 574 (968)
T ss_pred CC-cceeeCChHHcCccCCCEEECCCCc-cccc-CChhHhCcccCCEEECCCCcccccCCh----------hHhcCcccC
Confidence 98 6666667778899999999999865 5544 245678899999999999874434432 223478999
Q ss_pred ccccccccccceecCCCccccCCCcCceeeccCCCccc
Q 037935 1034 ALSLFDLDSLTSFSSGNYAFKLPSLQDLWVIGCPKMKL 1071 (1085)
Q Consensus 1034 ~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~ 1071 (1085)
.|++++|+....+|... .+.++....+.++|.+..
T Consensus 575 ~l~ls~N~l~~~~p~~~---~~~~~~~~~~~~n~~lc~ 609 (968)
T PLN00113 575 QVNISHNHLHGSLPSTG---AFLAINASAVAGNIDLCG 609 (968)
T ss_pred EEeccCCcceeeCCCcc---hhcccChhhhcCCccccC
Confidence 99999998878888753 345566666677766643
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=9.9e-26 Score=239.50 Aligned_cols=395 Identities=16% Similarity=0.182 Sum_probs=275.3
Q ss_pred ccccccceEEEeeccCccccccc----CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhcc
Q 037935 488 GDALKKCYAISLLNSSIHEVSLE----FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQL 563 (1085)
Q Consensus 488 ~~~~~~~r~Lsl~~~~~~~l~~~----~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L 563 (1085)
.......+-++.+...+..+... .-.+..++|++++|. ...+...+|.++++|+.+++..|.++.+|...+..
T Consensus 48 a~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNk---l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~s 124 (873)
T KOG4194|consen 48 ATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNK---LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHES 124 (873)
T ss_pred CcCCCCceeeecCccccccccccccCCcCccceeeeeccccc---cccCcHHHHhcCCcceeeeeccchhhhcccccccc
Confidence 33344556666666666554211 234677888888887 66777777888889999999888888888877777
Q ss_pred ccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc
Q 037935 564 TKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL 643 (1085)
Q Consensus 564 ~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 643 (1085)
.||+.|+|.+| .|.++..+.++-+..|+.|||+.|.+...+. ..+..-.++++|++++|.++.+..+.
T Consensus 125 ghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~is~i~~-----------~sfp~~~ni~~L~La~N~It~l~~~~ 192 (873)
T KOG4194|consen 125 GHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNLISEIPK-----------PSFPAKVNIKKLNLASNRITTLETGH 192 (873)
T ss_pred cceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhchhhcccC-----------CCCCCCCCceEEeecccccccccccc
Confidence 88888999888 8888887777888888888888888743322 22444567888888888888776553
Q ss_pred --cccccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcC
Q 037935 644 --FTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWG 721 (1085)
Q Consensus 644 --~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~ 721 (1085)
.+.+|..|.++.+ ......+..|..+++|+.|+|..
T Consensus 193 F~~lnsL~tlkLsrN------------------------------------------rittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRN------------------------------------------RITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred ccccchheeeecccC------------------------------------------cccccCHHHhhhcchhhhhhccc
Confidence 4555555555432 22121222455577777777766
Q ss_pred CCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccce
Q 037935 722 CDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNL 801 (1085)
Q Consensus 722 ~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 801 (1085)
| .++.. ....|..|++|+.|.+..|. +..+....+ ..+.++++|+|+. .++.....+. ...+..|+.|
T Consensus 231 N-~iriv-e~ltFqgL~Sl~nlklqrN~-I~kL~DG~F-------y~l~kme~l~L~~-N~l~~vn~g~-lfgLt~L~~L 298 (873)
T KOG4194|consen 231 N-RIRIV-EGLTFQGLPSLQNLKLQRND-ISKLDDGAF-------YGLEKMEHLNLET-NRLQAVNEGW-LFGLTSLEQL 298 (873)
T ss_pred c-ceeee-hhhhhcCchhhhhhhhhhcC-cccccCcce-------eeecccceeeccc-chhhhhhccc-ccccchhhhh
Confidence 4 33332 22346777777777777665 322222111 2466777777764 3343333322 2235667777
Q ss_pred eeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhH
Q 037935 802 VACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDL 881 (1085)
Q Consensus 802 ~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 881 (1085)
+++....-...+ . ....+++|++|++|+|.++...+..|.. ++.|+.|.+++|.+..+....
T Consensus 299 ~lS~NaI~rih~----d------------~WsftqkL~~LdLs~N~i~~l~~~sf~~--L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 299 DLSYNAIQRIHI----D------------SWSFTQKLKELDLSSNRITRLDEGSFRV--LSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred ccchhhhheeec----c------------hhhhcccceeEeccccccccCChhHHHH--HHHhhhhcccccchHHHHhhH
Confidence 766553222111 1 1245789999999999999988887776 789999999999999999999
Q ss_pred HhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeecccccccc
Q 037935 882 LERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSL 961 (1085)
Q Consensus 882 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~ 961 (1085)
|..+.+|++|++++|.+.....+. ...+..+++|+.|.+.+ +++++++...+. .++.|+.|++.++ -+.++
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDa---a~~f~gl~~LrkL~l~g-Nqlk~I~krAfs----gl~~LE~LdL~~N-aiaSI 431 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDA---AVAFNGLPSLRKLRLTG-NQLKSIPKRAFS----GLEALEHLDLGDN-AIASI 431 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecc---hhhhccchhhhheeecC-ceeeecchhhhc----cCcccceecCCCC-cceee
Confidence 999999999999999988776653 34467789999999999 899999887765 6889999999988 56677
Q ss_pred CCCCcccccCccEEEecc
Q 037935 962 LPSSSVSFRNLTRLETFA 979 (1085)
Q Consensus 962 ~~~~l~~l~~L~~L~l~~ 979 (1085)
.+.++..+ .|++|.+..
T Consensus 432 q~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 432 QPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cccccccc-hhhhhhhcc
Confidence 78878777 888887754
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=4.2e-25 Score=234.74 Aligned_cols=317 Identities=18% Similarity=0.219 Sum_probs=198.8
Q ss_pred CcceeeeccCCCccccccChhhhcCC--CcceEEEecCCcccCC-chhhhccccccEEeccCcccccccchhhhhccccC
Q 037935 515 QLEFLHIDPKITFAELNIPDNFFKGM--KKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRL 591 (1085)
Q Consensus 515 ~Lr~L~l~~~~~~~~~~l~~~~~~~l--~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L 591 (1085)
+-+.|+++++. ...+....+.++ ..-+.||+++|.+..+ +..|.++++|+.+++.+| .++.+|... +...+|
T Consensus 53 ~~~lldcs~~~---lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~-~~sghl 127 (873)
T KOG4194|consen 53 NTRLLDCSDRE---LEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFG-HESGHL 127 (873)
T ss_pred CceeeecCccc---cccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhccccc-ccccce
Confidence 34566666655 333322222222 3456799999999886 577899999999999999 999999853 566779
Q ss_pred CEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc--cccccceeeEEecCCCcccccccccc
Q 037935 592 EELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL--FTKKLERFDISIGDGSFDSTKIIGND 669 (1085)
Q Consensus 592 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~ 669 (1085)
++|+|.+|.+. ...-+++.-++.|+.|+++.|.++.++... .-.++++|+++.+.
T Consensus 128 ~~L~L~~N~I~-----------sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~------------ 184 (873)
T KOG4194|consen 128 EKLDLRHNLIS-----------SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR------------ 184 (873)
T ss_pred eEEeeeccccc-----------cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc------------
Confidence 99999999983 445577888999999999999998877643 22344444443221
Q ss_pred cccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEecccc
Q 037935 670 WFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCK 749 (1085)
Q Consensus 670 ~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~ 749 (1085)
+...--..|..|.+|..|.|++| .++.+ |...|..||+|+.|++..|.
T Consensus 185 ------------------------------It~l~~~~F~~lnsL~tlkLsrN-rittL-p~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 185 ------------------------------ITTLETGHFDSLNSLLTLKLSRN-RITTL-PQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred ------------------------------ccccccccccccchheeeecccC-ccccc-CHHHhhhcchhhhhhccccc
Confidence 00111112334455555555553 33333 23345555555555554433
Q ss_pred chHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcc
Q 037935 750 SLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLF 829 (1085)
Q Consensus 750 ~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~ 829 (1085)
++. .. .+
T Consensus 233 -iri------------------------------ve----------------------~l-------------------- 239 (873)
T KOG4194|consen 233 -IRI------------------------------VE----------------------GL-------------------- 239 (873)
T ss_pred -eee------------------------------eh----------------------hh--------------------
Confidence 000 00 00
Q ss_pred cccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCccc
Q 037935 830 SFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLE 909 (1085)
Q Consensus 830 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 909 (1085)
.+..+++|+.|.+..|.+..+....|.. +.++++|++..|++..+..+++-++++|+.|++++|.+..+...
T Consensus 240 -tFqgL~Sl~nlklqrN~I~kL~DG~Fy~--l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d----- 311 (873)
T KOG4194|consen 240 -TFQGLPSLQNLKLQRNDISKLDDGAFYG--LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID----- 311 (873)
T ss_pred -hhcCchhhhhhhhhhcCcccccCcceee--ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc-----
Confidence 0234677788888888887777777766 78999999999999998888888899999999999997776432
Q ss_pred cccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEecc
Q 037935 910 THARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFA 979 (1085)
Q Consensus 910 ~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~ 979 (1085)
....+++|++|+++. +.+++++.+.+. .+..|+.|.++++ ++..+....+..+++|++|++++
T Consensus 312 -~WsftqkL~~LdLs~-N~i~~l~~~sf~----~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 312 -SWSFTQKLKELDLSS-NRITRLDEGSFR----VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred -hhhhcccceeEeccc-cccccCChhHHH----HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcC
Confidence 233455666666666 555555543332 3445555555544 33333333344444555555443
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=4.1e-25 Score=248.10 Aligned_cols=470 Identities=19% Similarity=0.192 Sum_probs=306.8
Q ss_pred EEEeeccCcccccccC-CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCc
Q 037935 496 AISLLNSSIHEVSLEF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDC 574 (1085)
Q Consensus 496 ~Lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~ 574 (1085)
+++.+++.++.+|..+ .-..+..|++..|. ....|-++..+.-+|+.||+++|.+..+|..|..+.+|+.|+++.|
T Consensus 2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~---~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNNEALQILNLRRNS---LLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred CcccccccCcccchhhccHHHHHhhhccccc---cccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh
Confidence 3566677777787654 44458888888887 4455556666666799999999999999999999999999999999
Q ss_pred ccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc-cccccceeeE
Q 037935 575 LQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL-FTKKLERFDI 653 (1085)
Q Consensus 575 ~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l 653 (1085)
.+.++|.+. +++.+|++|+|.+|.+ ...|.++..+++|++|++++|....+|..+ .+..+..+..
T Consensus 79 -~i~~vp~s~-~~~~~l~~lnL~~n~l------------~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~ 144 (1081)
T KOG0618|consen 79 -YIRSVPSSC-SNMRNLQYLNLKNNRL------------QSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAA 144 (1081)
T ss_pred -hHhhCchhh-hhhhcchhheeccchh------------hcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhh
Confidence 999999885 9999999999999986 446778889999999999999999888876 4444444443
Q ss_pred EecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchhh
Q 037935 654 SIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSAST 733 (1085)
Q Consensus 654 ~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~ 733 (1085)
+.+. .+..++... ++.+.++.+...+.++..+..+.. .|+|..+... .+ .
T Consensus 145 s~N~----------------------~~~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~----d 194 (1081)
T KOG0618|consen 145 SNNE----------------------KIQRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL----D 194 (1081)
T ss_pred hcch----------------------hhhhhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh----h
Confidence 2210 011111111 334444444445555554444444 4777776443 21 2
Q ss_pred HhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCccccc
Q 037935 734 IQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 813 (1085)
Q Consensus 734 l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~ 813 (1085)
+..+++|+.|....+. +..+.. .-++|+.|...+++-.... . .....+|+.++++... +..
T Consensus 195 ls~~~~l~~l~c~rn~-ls~l~~-----------~g~~l~~L~a~~n~l~~~~-~---~p~p~nl~~~dis~n~-l~~-- 255 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQ-LSELEI-----------SGPSLTALYADHNPLTTLD-V---HPVPLNLQYLDISHNN-LSN-- 255 (1081)
T ss_pred hhhccchhhhhhhhcc-cceEEe-----------cCcchheeeeccCcceeec-c---ccccccceeeecchhh-hhc--
Confidence 5567777777665544 211110 2456677776665544211 1 1122356666655432 222
Q ss_pred CCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEe
Q 037935 814 NDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYL 893 (1085)
Q Consensus 814 ~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 893 (1085)
++.+...+.+|+.+++.+|.++.++...+. .++|+.|.+..|.+..+|+. ...+++|+.|++
T Consensus 256 --------------lp~wi~~~~nle~l~~n~N~l~~lp~ri~~---~~~L~~l~~~~nel~yip~~-le~~~sL~tLdL 317 (1081)
T KOG0618|consen 256 --------------LPEWIGACANLEALNANHNRLVALPLRISR---ITSLVSLSAAYNELEYIPPF-LEGLKSLRTLDL 317 (1081)
T ss_pred --------------chHHHHhcccceEecccchhHHhhHHHHhh---hhhHHHHHhhhhhhhhCCCc-ccccceeeeeee
Confidence 223455677888888888887666655444 47778887778888777743 356788888888
Q ss_pred ecccccEEEecCCcccccccccc-ccceeccCCcccccccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCc
Q 037935 894 SDCSYEVVFSNEGYLETHARKLA-LIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNL 972 (1085)
Q Consensus 894 ~~~~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L 972 (1085)
..|.+...+. ..+..+. +|+.|+.+. +.+..++.- .....+.|+.|++.++.--+...|. +.++++|
T Consensus 318 ~~N~L~~lp~------~~l~v~~~~l~~ln~s~-n~l~~lp~~----~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hL 385 (1081)
T KOG0618|consen 318 QSNNLPSLPD------NFLAVLNASLNTLNVSS-NKLSTLPSY----EENNHAALQELYLANNHLTDSCFPV-LVNFKHL 385 (1081)
T ss_pred hhccccccch------HHHhhhhHHHHHHhhhh-ccccccccc----cchhhHHHHHHHHhcCcccccchhh-hccccce
Confidence 8888766543 1112222 244555443 455544421 1246788999999988433444454 7888999
Q ss_pred cEEEeccccCcccccchhhhhhcccccEEEEcCCccccccccc------------ccccccccccceeeccccccccccc
Q 037935 973 TRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIIS------------DEDETANLKEEIVFSKLSALSLFDL 1040 (1085)
Q Consensus 973 ~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~------------~~~~~~~~~~~~~~~~L~~L~l~~c 1040 (1085)
+.|++++ ++|..+ +...+.+++.|+.|+++| ++|+.++.. ....+..+|+...++.|+.++++ |
T Consensus 386 KVLhLsy-NrL~~f-pas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~ 461 (1081)
T KOG0618|consen 386 KVLHLSY-NRLNSF-PASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-C 461 (1081)
T ss_pred eeeeecc-cccccC-CHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-c
Confidence 9999988 567776 567788999999999999 446555421 11123445666677888888876 5
Q ss_pred cccceecCCCccccC--CCcCceeeccCCC
Q 037935 1041 DSLTSFSSGNYAFKL--PSLQDLWVIGCPK 1068 (1085)
Q Consensus 1041 ~~L~~l~~~~~~~~l--~~L~~L~i~~C~~ 1068 (1085)
++|+.+... ..+ |.|++|+++|++.
T Consensus 462 N~L~~~~l~---~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 462 NNLSEVTLP---EALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred chhhhhhhh---hhCCCcccceeeccCCcc
Confidence 677655442 223 5788888888775
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=7.6e-26 Score=230.09 Aligned_cols=260 Identities=20% Similarity=0.255 Sum_probs=152.3
Q ss_pred ceEEEeeccCcccccccC-CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEecc
Q 037935 494 CYAISLLNSSIHEVSLEF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLT 572 (1085)
Q Consensus 494 ~r~Lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls 572 (1085)
+..+.+++|++..+.... .+..+.+|.+++|. ...+|+. ++.+..+..|+.++|++.++|+.++.+..|+.|+.+
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~---l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNK---LSQLPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccch---hhhCCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 455666677766665443 66777777777776 5666665 566777777788888887788778888888888888
Q ss_pred CcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc-ccccccee
Q 037935 573 DCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL-FTKKLERF 651 (1085)
Q Consensus 573 ~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~l~~L~~L 651 (1085)
+| .++.+|+++ +.+..|+.|+..+|.+.. .|+.+.++.+|..+++.+|++..+|+.. .++.|+++
T Consensus 123 ~n-~~~el~~~i-~~~~~l~dl~~~~N~i~s------------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 123 SN-ELKELPDSI-GRLLDLEDLDATNNQISS------------LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHL 188 (565)
T ss_pred cc-ceeecCchH-HHHhhhhhhhcccccccc------------CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence 77 777777775 777777777777777643 3444555556666666666666655543 55555555
Q ss_pred eEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccch
Q 037935 652 DISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSA 731 (1085)
Q Consensus 652 ~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~ 731 (1085)
+...+ +-+.-...+..+.+|+.+.|..+... .+| .|++++.|++|++.. +.++.+ |.
T Consensus 189 d~~~N-------------------~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~-N~i~~l-pa 245 (565)
T KOG0472|consen 189 DCNSN-------------------LLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGE-NQIEML-PA 245 (565)
T ss_pred ccchh-------------------hhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcc-cHHHhh-HH
Confidence 54211 11111112222333333333332221 234 456677777777754 455555 33
Q ss_pred hhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCC
Q 037935 732 STIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 807 (1085)
Q Consensus 732 ~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 807 (1085)
.....+++|.+|++.+|. +++++.+.. .+.+|++|++++. .+..++.. .+.+ .|+.|.+.+.|
T Consensus 246 e~~~~L~~l~vLDLRdNk-lke~Pde~c--------lLrsL~rLDlSNN-~is~Lp~s--Lgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNK-LKEVPDEIC--------LLRSLERLDLSNN-DISSLPYS--LGNL-HLKFLALEGNP 308 (565)
T ss_pred HHhcccccceeeeccccc-cccCchHHH--------HhhhhhhhcccCC-ccccCCcc--cccc-eeeehhhcCCc
Confidence 445577777777777776 554443322 3566777777762 33333332 2223 44555544443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.3e-24 Score=232.18 Aligned_cols=367 Identities=19% Similarity=0.248 Sum_probs=203.1
Q ss_pred CcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCEE
Q 037935 515 QLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEEL 594 (1085)
Q Consensus 515 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L 594 (1085)
-.|-.++++|. |.-..+|.+ ...|+.++-|.|..+++..+|+.++.|.+|++|.+++| ++.++-.+. +.|+.|+.+
T Consensus 8 FVrGvDfsgND-Fsg~~FP~~-v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGEL-s~Lp~LRsv 83 (1255)
T KOG0444|consen 8 FVRGVDFSGND-FSGDRFPHD-VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGEL-SDLPRLRSV 83 (1255)
T ss_pred eeecccccCCc-CCCCcCchh-HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhh-ccchhhHHH
Confidence 33444455544 222344544 56677777777777777777777777777777777777 666666553 777777777
Q ss_pred eccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc-cccccceeeEEecCCCcccccccccccccc
Q 037935 595 YMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL-FTKKLERFDISIGDGSFDSTKIIGNDWFQT 673 (1085)
Q Consensus 595 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 673 (1085)
.++.|++. ..-.|..+-+|..|.+|+++.|++...|..+ .-+++-.|+++.+
T Consensus 84 ~~R~N~LK----------nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N----------------- 136 (1255)
T KOG0444|consen 84 IVRDNNLK----------NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN----------------- 136 (1255)
T ss_pred hhhccccc----------cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-----------------
Confidence 77777763 2234555667777777777777777776654 2333333333221
Q ss_pred cccccceeehhhhhhcccccccccccccCCCCC-cccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchH
Q 037935 674 FNIQSIYIFCIVMALELNAINVDEIWHYNQLPA-MVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQ 752 (1085)
Q Consensus 674 ~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~ 752 (1085)
.+. .+|. .+-++..|-.|+|++| .++.+|| .+..|.+|++|.+++|+. .
T Consensus 137 -------------------------~Ie-tIPn~lfinLtDLLfLDLS~N-rLe~LPP--Q~RRL~~LqtL~Ls~NPL-~ 186 (1255)
T KOG0444|consen 137 -------------------------NIE-TIPNSLFINLTDLLFLDLSNN-RLEMLPP--QIRRLSMLQTLKLSNNPL-N 186 (1255)
T ss_pred -------------------------ccc-cCCchHHHhhHhHhhhccccc-hhhhcCH--HHHHHhhhhhhhcCCChh-h
Confidence 111 1222 2345667777888774 6777755 377888888888888772 1
Q ss_pred HHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCccccc
Q 037935 753 EIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFK 832 (1085)
Q Consensus 753 ~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~ 832 (1085)
.. .+..+ .++.+|+.|
T Consensus 187 hf---------------------QLrQL------------PsmtsL~vL------------------------------- 202 (1255)
T KOG0444|consen 187 HF---------------------QLRQL------------PSMTSLSVL------------------------------- 202 (1255)
T ss_pred HH---------------------HHhcC------------ccchhhhhh-------------------------------
Confidence 11 01110 012222222
Q ss_pred ccCCccceeeeccCC--ceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCcccc
Q 037935 833 KILPNLEGLALSGKD--ITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLET 910 (1085)
Q Consensus 833 ~~l~~L~~L~ls~n~--l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 910 (1085)
.+|+.+ +..+ |..+.. +.+|..+++++|++..+|... -++++|++|++|+|.++.+.-..+
T Consensus 203 ---------hms~TqRTl~N~-Ptsld~--l~NL~dvDlS~N~Lp~vPecl-y~l~~LrrLNLS~N~iteL~~~~~---- 265 (1255)
T KOG0444|consen 203 ---------HMSNTQRTLDNI-PTSLDD--LHNLRDVDLSENNLPIVPECL-YKLRNLRRLNLSGNKITELNMTEG---- 265 (1255)
T ss_pred ---------hcccccchhhcC-CCchhh--hhhhhhccccccCCCcchHHH-hhhhhhheeccCcCceeeeeccHH----
Confidence 222222 1111 111111 566677777777777666443 367777777777777665532221
Q ss_pred ccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEeccccCcccccchh
Q 037935 911 HARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSS 990 (1085)
Q Consensus 911 ~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~ 990 (1085)
.-.+|+.|+++. +.|+.+|.. .+.+++|+.|.+.++.--..-.|++++.+.+|+.+...+ ++|.-+ +.
T Consensus 266 ---~W~~lEtLNlSr-NQLt~LP~a-----vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElV--PE 333 (1255)
T KOG0444|consen 266 ---EWENLETLNLSR-NQLTVLPDA-----VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELV--PE 333 (1255)
T ss_pred ---HHhhhhhhcccc-chhccchHH-----HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccC--ch
Confidence 123456666665 555555542 234566666666655322222466677777777776654 445433 44
Q ss_pred hhhhcccccEEEEcCCcccccccccccccccccccceeecccccccccccccccee
Q 037935 991 KAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSKLSALSLFDLDSLTSF 1046 (1085)
Q Consensus 991 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 1046 (1085)
.++.+..|+.|.+..+ .+-.++. ....++.|+.|++...|+|.--
T Consensus 334 glcRC~kL~kL~L~~N-rLiTLPe----------aIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLDHN-RLITLPE----------AIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred hhhhhHHHHHhccccc-ceeechh----------hhhhcCCcceeeccCCcCccCC
Confidence 5566666676666553 3333322 1122466666666666665433
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=2.3e-24 Score=230.24 Aligned_cols=320 Identities=21% Similarity=0.309 Sum_probs=197.1
Q ss_pred ccccceEEEeeccCccccccc-CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccE
Q 037935 490 ALKKCYAISLLNSSIHEVSLE-FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRM 568 (1085)
Q Consensus 490 ~~~~~r~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~ 568 (1085)
..+++.||++.+|.+..+... ..++.||++.+..|+ .....+|+++|. ++.|.+||||+|++++.|..+..-+++-+
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~-LKnsGiP~diF~-l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNN-LKNSGIPTDIFR-LKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccc-cccCCCCchhcc-cccceeeecchhhhhhcchhhhhhcCcEE
Confidence 345777888887777665443 367788888887775 234567777664 78888888888888888888888888888
Q ss_pred EeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCccccccc
Q 037935 569 LDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKL 648 (1085)
Q Consensus 569 L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L 648 (1085)
|+||+| +|..+|...|-+|+.|-.|||++|.+.. .|.....|.+|++|.+++|.+..+. |
T Consensus 131 LNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~------------LPPQ~RRL~~LqtL~Ls~NPL~hfQ-------L 190 (1255)
T KOG0444|consen 131 LNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM------------LPPQIRRLSMLQTLKLSNNPLNHFQ-------L 190 (1255)
T ss_pred EEcccC-ccccCCchHHHhhHhHhhhccccchhhh------------cCHHHHHHhhhhhhhcCCChhhHHH-------H
Confidence 888888 8888888887888888888888887632 3445566777777777776543211 0
Q ss_pred ceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCC-cc
Q 037935 649 ERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKL-KY 727 (1085)
Q Consensus 649 ~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l-~~ 727 (1085)
.+ ++++++|+.|++++.+.. .+
T Consensus 191 -----------------------------------------------------rQ----LPsmtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 191 -----------------------------------------------------RQ----LPSMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred -----------------------------------------------------hc----Cccchhhhhhhcccccchhhc
Confidence 01 223456677777665543 23
Q ss_pred ccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCC
Q 037935 728 IFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 807 (1085)
Q Consensus 728 l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 807 (1085)
+| ..+..+.||..++++.|. +|
T Consensus 214 ~P--tsld~l~NL~dvDlS~N~-------------------Lp------------------------------------- 235 (1255)
T KOG0444|consen 214 IP--TSLDDLHNLRDVDLSENN-------------------LP------------------------------------- 235 (1255)
T ss_pred CC--CchhhhhhhhhccccccC-------------------CC-------------------------------------
Confidence 32 235555555555554433 00
Q ss_pred CcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccc
Q 037935 808 KITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHN 887 (1085)
Q Consensus 808 ~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 887 (1085)
..| .+.-.+++|+.|++|+|.|+.+... .....+|++|+++.|+++.+|.. +..++.
T Consensus 236 ---~vP----------------ecly~l~~LrrLNLS~N~iteL~~~---~~~W~~lEtLNlSrNQLt~LP~a-vcKL~k 292 (1255)
T KOG0444|consen 236 ---IVP----------------ECLYKLRNLRRLNLSGNKITELNMT---EGEWENLETLNLSRNQLTVLPDA-VCKLTK 292 (1255)
T ss_pred ---cch----------------HHHhhhhhhheeccCcCceeeeecc---HHHHhhhhhhccccchhccchHH-HhhhHH
Confidence 000 0112357778888888887765332 11257788888888888888854 568899
Q ss_pred cceEEeeccc--ccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeeccccccccCCCC
Q 037935 888 LEFLYLSDCS--YEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSS 965 (1085)
Q Consensus 888 L~~L~l~~~~--l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 965 (1085)
|+.|.+.+|+ +.++++. +..+.+|+.+...+ ++|+-+|.+. +.|+.|+.|.+..+ .+..+ |++
T Consensus 293 L~kLy~n~NkL~FeGiPSG-------IGKL~~Levf~aan-N~LElVPEgl-----cRC~kL~kL~L~~N-rLiTL-Pea 357 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGIPSG-------IGKLIQLEVFHAAN-NKLELVPEGL-----CRCVKLQKLKLDHN-RLITL-PEA 357 (1255)
T ss_pred HHHHHhccCcccccCCccc-------hhhhhhhHHHHhhc-cccccCchhh-----hhhHHHHHhccccc-ceeec-hhh
Confidence 9999999888 3444332 23455566666655 4454443321 23455555555433 33333 344
Q ss_pred cccccCccEEEeccccCcc
Q 037935 966 SVSFRNLTRLETFACKKLM 984 (1085)
Q Consensus 966 l~~l~~L~~L~l~~c~~L~ 984 (1085)
+.-++.|+.|++..+++|.
T Consensus 358 IHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 358 IHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhcCCcceeeccCCcCcc
Confidence 5555555555555555544
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.8e-21 Score=246.30 Aligned_cols=344 Identities=19% Similarity=0.231 Sum_probs=245.3
Q ss_pred HHhhcCC-CCcEEEEEeccCCCCCCcccccccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccc
Q 037935 618 DELMHLQ-RLTTLEIDVEDDSILPDGLFTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVD 696 (1085)
Q Consensus 618 ~~l~~L~-~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~ 696 (1085)
..+..++ +|+.|.+..+.+..+|..+...+|+.|++..+. +
T Consensus 582 ~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~-------------------------------------l- 623 (1153)
T PLN03210 582 EGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK-------------------------------------L- 623 (1153)
T ss_pred cchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcc-------------------------------------c-
Confidence 3344443 577777777777777777666677766663210 0
Q ss_pred cccccCCCCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEe
Q 037935 697 EIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLK 776 (1085)
Q Consensus 697 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~ 776 (1085)
..+|..+..+++|+.|+|++|..++.+|. +..+++|+.|++++|..+..++... ..+++|+.|+
T Consensus 624 -----~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si--------~~L~~L~~L~ 687 (1153)
T PLN03210 624 -----EKLWDGVHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSI--------QYLNKLEDLD 687 (1153)
T ss_pred -----cccccccccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhh--------hccCCCCEEe
Confidence 01233345678999999999988888743 7889999999999999887665432 2578999999
Q ss_pred cCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccC
Q 037935 777 LDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDF 856 (1085)
Q Consensus 777 l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 856 (1085)
+++|..+..++... .+++|+.|.+.+|..+..+| ...++|++|++++|.+..++.. +
T Consensus 688 L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p-------------------~~~~nL~~L~L~~n~i~~lP~~-~ 744 (1153)
T PLN03210 688 MSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFP-------------------DISTNISWLDLDETAIEEFPSN-L 744 (1153)
T ss_pred CCCCCCcCccCCcC---CCCCCCEEeCCCCCCccccc-------------------cccCCcCeeecCCCcccccccc-c
Confidence 99999998886542 57899999999998877655 1246899999999998765432 2
Q ss_pred CcCccCCceEEEecCCc-------ccccchhHHhhccccceEEeeccc-ccEEEecCCccccccccccccceeccCCccc
Q 037935 857 PQHLFGSLKQLRVGDDD-------LACFPLDLLERFHNLEFLYLSDCS-YEVVFSNEGYLETHARKLALIKRLNLTRLNH 928 (1085)
Q Consensus 857 ~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 928 (1085)
.+++|++|++..+. +..+++..+..+++|+.|++++|+ +..++ ..+..+++|+.|++++|++
T Consensus 745 ---~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-------~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 745 ---RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-------SSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred ---cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-------hhhhCCCCCCEEECCCCCC
Confidence 26888888887522 222222233456789999999987 44332 3456788999999999999
Q ss_pred ccccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcc
Q 037935 929 LQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPA 1008 (1085)
Q Consensus 929 L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~ 1008 (1085)
++.+|... .+++|+.|++++|.++..++.. .++|+.|++++ +.++.+ +..+..+++|+.|++.+|++
T Consensus 815 L~~LP~~~------~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~-n~i~~i--P~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 815 LETLPTGI------NLESLESLDLSGCSRLRTFPDI----STNISDLNLSR-TGIEEV--PWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred cCeeCCCC------CccccCEEECCCCCcccccccc----ccccCEeECCC-CCCccC--hHHHhcCCCCCEEECCCCCC
Confidence 98887632 4788999999999888665321 35899999987 457766 34567889999999999999
Q ss_pred cccccccccccccccccceeeccccccccccccccceecCCCcc-----------ccCCCcCceeeccCCCccc
Q 037935 1009 MTEVIISDEDETANLKEEIVFSKLSALSLFDLDSLTSFSSGNYA-----------FKLPSLQDLWVIGCPKMKL 1071 (1085)
Q Consensus 1009 l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~-----------~~l~~L~~L~i~~C~~l~~ 1071 (1085)
++.++. ....+++|+.+++.+|++|+.++....+ ..+|+...+.+.+|.++..
T Consensus 882 L~~l~~----------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 882 LQRVSL----------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred cCccCc----------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 888754 2223688888899999988766542211 2345556677788877653
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=3.8e-24 Score=217.77 Aligned_cols=452 Identities=21% Similarity=0.216 Sum_probs=289.3
Q ss_pred CCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCE
Q 037935 514 PQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEE 593 (1085)
Q Consensus 514 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~ 593 (1085)
..+..|.+++|. ...+.++ ..++..|.+|++++|.+.++|.+|+.+..++.|+.++| ++..+|+.+ +.+.+|.+
T Consensus 45 v~l~~lils~N~---l~~l~~d-l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i-~s~~~l~~ 118 (565)
T KOG0472|consen 45 VDLQKLILSHND---LEVLRED-LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQI-GSLISLVK 118 (565)
T ss_pred cchhhhhhccCc---hhhccHh-hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHH-hhhhhhhh
Confidence 567788898887 5555554 78899999999999999999999999999999999999 999999996 99999999
Q ss_pred EeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc-cccccceeeEEecCCCccccccccccccc
Q 037935 594 LYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL-FTKKLERFDISIGDGSFDSTKIIGNDWFQ 672 (1085)
Q Consensus 594 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~~ 672 (1085)
|+.++|.+. +.+.+++.+..|..++..+|++..+|.++ .+.+|..+.+..+
T Consensus 119 l~~s~n~~~------------el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n---------------- 170 (565)
T KOG0472|consen 119 LDCSSNELK------------ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN---------------- 170 (565)
T ss_pred hhcccccee------------ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc----------------
Confidence 999999874 34556778889999999999999999987 6777777766422
Q ss_pred ccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchH
Q 037935 673 TFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQ 752 (1085)
Q Consensus 673 ~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~ 752 (1085)
++..+...... .+.|+.++.-.+.. +.+|..++.+.+|..|++..+ .+..+| .|+.+..|++|++..|. ++
T Consensus 171 --~l~~l~~~~i~-m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~N-ki~~lP---ef~gcs~L~Elh~g~N~-i~ 241 (565)
T KOG0472|consen 171 --KLKALPENHIA-MKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRN-KIRFLP---EFPGCSLLKELHVGENQ-IE 241 (565)
T ss_pred --chhhCCHHHHH-HHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhc-ccccCC---CCCccHHHHHHHhcccH-HH
Confidence 22221111111 33344444333222 357778888889999999885 556654 37888888888887776 66
Q ss_pred HHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCccccc
Q 037935 753 EIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFK 832 (1085)
Q Consensus 753 ~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~ 832 (1085)
.++.+.. ..+++|..|++++ .++++.+.+ ...+.+|++|++++.. +..+| ...
T Consensus 242 ~lpae~~-------~~L~~l~vLDLRd-Nklke~Pde--~clLrsL~rLDlSNN~-is~Lp----------------~sL 294 (565)
T KOG0472|consen 242 MLPAEHL-------KHLNSLLVLDLRD-NKLKEVPDE--ICLLRSLERLDLSNND-ISSLP----------------YSL 294 (565)
T ss_pred hhHHHHh-------cccccceeeeccc-cccccCchH--HHHhhhhhhhcccCCc-cccCC----------------ccc
Confidence 5544322 2478888899887 466666554 2345678888887763 22222 122
Q ss_pred ccCCccceeeeccCCceeeecc--------------------------------------cCCc-CccCCceEEEecCCc
Q 037935 833 KILPNLEGLALSGKDITMILQD--------------------------------------DFPQ-HLFGSLKQLRVGDDD 873 (1085)
Q Consensus 833 ~~l~~L~~L~ls~n~l~~~~~~--------------------------------------~~~~-~~~~~L~~L~l~~n~ 873 (1085)
+++ .|+.|.+.+|++..+-.. .|+. ....+.+.|+++.-+
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 344 666677777764322111 0110 113456677777777
Q ss_pred ccccchhHHhhcc--ccceEEeecccccEEEecCCccccccccccccc-eeccCCcccccccccCCCchhhhHhhhhcee
Q 037935 874 LACFPLDLLERFH--NLEFLYLSDCSYEVVFSNEGYLETHARKLALIK-RLNLTRLNHLQQLWKHDSKELDFIFQHLQIL 950 (1085)
Q Consensus 874 l~~~~~~~~~~l~--~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L 950 (1085)
++.+|...|..-. -.+..+++.|++.+++.. +..+..+. .+.+++ +.+..++. ....+++|..|
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~-------L~~lkelvT~l~lsn-n~isfv~~-----~l~~l~kLt~L 440 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR-------LVELKELVTDLVLSN-NKISFVPL-----ELSQLQKLTFL 440 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHhhhhhh-------hHHHHHHHHHHHhhc-CccccchH-----HHHhhhcceee
Confidence 7777776664332 266677777776665421 11111121 222222 33322222 22345666666
Q ss_pred eeeccccccccCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccccccccccccccceeec
Q 037935 951 RVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFS 1030 (1085)
Q Consensus 951 ~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~ 1030 (1085)
+++++ -+.++ |..++.+..|+.|+|+.+ +...+ +....-+..|+.+-.++ ..+..+.++ ....+.
T Consensus 441 ~L~NN-~Ln~L-P~e~~~lv~Lq~LnlS~N-rFr~l--P~~~y~lq~lEtllas~-nqi~~vd~~---------~l~nm~ 505 (565)
T KOG0472|consen 441 DLSNN-LLNDL-PEEMGSLVRLQTLNLSFN-RFRML--PECLYELQTLETLLASN-NQIGSVDPS---------GLKNMR 505 (565)
T ss_pred ecccc-hhhhc-chhhhhhhhhheeccccc-ccccc--hHHHhhHHHHHHHHhcc-ccccccChH---------Hhhhhh
Confidence 66665 23333 334556666777777653 33333 22233333333333333 445555431 233467
Q ss_pred cccccccccccccceecCCCccccCCCcCceeeccCC
Q 037935 1031 KLSALSLFDLDSLTSFSSGNYAFKLPSLQDLWVIGCP 1067 (1085)
Q Consensus 1031 ~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 1067 (1085)
+|+.|++.+ +.++++|.+ .+++++|++|+++|.|
T Consensus 506 nL~tLDL~n-Ndlq~IPp~--LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 506 NLTTLDLQN-NDLQQIPPI--LGNMTNLRHLELDGNP 539 (565)
T ss_pred hcceeccCC-CchhhCChh--hccccceeEEEecCCc
Confidence 888888876 568999987 6899999999999965
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=2.7e-23 Score=233.67 Aligned_cols=439 Identities=20% Similarity=0.197 Sum_probs=239.9
Q ss_pred cceEEEeeccCcccccccC-CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEec
Q 037935 493 KCYAISLLNSSIHEVSLEF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDL 571 (1085)
Q Consensus 493 ~~r~Lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L 571 (1085)
++.+|++++|.+..+|..+ .+++|+.|.++.|. +..+|. ...++++|++|+|.+|.+..+|.++..+++|++|++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~---i~~vp~-s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY---IRSVPS-SCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhh---HhhCch-hhhhhhcchhheeccchhhcCchhHHhhhccccccc
Confidence 3788999999998888766 77899999999887 677774 478899999999999999999999999999999999
Q ss_pred cCcccccccchhhhhccccCCEEeccCCCcchhhccc--------CCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc
Q 037935 572 TDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKG--------NSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL 643 (1085)
Q Consensus 572 s~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~--------~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 643 (1085)
++| .+...|.-+ ..++.+..+..++|......+.. .....+..+.++..+++ .|+++.|.+. .-...
T Consensus 122 S~N-~f~~~Pl~i-~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dls 196 (1081)
T KOG0618|consen 122 SFN-HFGPIPLVI-EVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDLS 196 (1081)
T ss_pred chh-ccCCCchhH-HhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhhh
Confidence 999 898888865 78888888888887211110000 00111222222333333 3555555544 11111
Q ss_pred cccccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCC
Q 037935 644 FTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCD 723 (1085)
Q Consensus 644 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~ 723 (1085)
.+.+|+.+....+ .+..+.+.. .+|+.+....+......+. +.-.+|++++++.+
T Consensus 197 ~~~~l~~l~c~rn------------------~ls~l~~~g----~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n- 251 (1081)
T KOG0618|consen 197 NLANLEVLHCERN------------------QLSELEISG----PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHN- 251 (1081)
T ss_pred hccchhhhhhhhc------------------ccceEEecC----cchheeeeccCcceeeccc--cccccceeeecchh-
Confidence 2233333222111 111111110 0111111111111111111 11236666666664
Q ss_pred CCccccchhhHhhcccccEEEeccccchHHHhccCCc--------------cccccc-ccCCcccEEecCCCCccccccC
Q 037935 724 KLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRT--------------DQVTAY-FVFPRVTTLKLDGLPELRCLYP 788 (1085)
Q Consensus 724 ~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~--------------~~~~~~-~~~~~L~~L~l~~~~~l~~~~~ 788 (1085)
.+..+| .+++.+++|+.+.+.+|. +..++...+. ...++. ..+.+|++|++... ++..++.
T Consensus 252 ~l~~lp--~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~ 327 (1081)
T KOG0618|consen 252 NLSNLP--EWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPD 327 (1081)
T ss_pred hhhcch--HHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc-cccccch
Confidence 344442 556666666666666555 2333222210 000000 12444555554431 2222211
Q ss_pred CCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEE
Q 037935 789 GMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLR 868 (1085)
Q Consensus 789 ~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 868 (1085)
......-.+|..|..+ |.++...|. .-...++.|+.|++.+|.+++.....+.. +.+|+.|+
T Consensus 328 ~~l~v~~~~l~~ln~s-~n~l~~lp~---------------~~e~~~~~Lq~LylanN~Ltd~c~p~l~~--~~hLKVLh 389 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVS-SNKLSTLPS---------------YEENNHAALQELYLANNHLTDSCFPVLVN--FKHLKVLH 389 (1081)
T ss_pred HHHhhhhHHHHHHhhh-hcccccccc---------------ccchhhHHHHHHHHhcCcccccchhhhcc--ccceeeee
Confidence 1000000012222211 111222110 00123577888888888877654444443 68888888
Q ss_pred ecCCcccccchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhhc
Q 037935 869 VGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQ 948 (1085)
Q Consensus 869 l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~ 948 (1085)
|++|.+..+|...+.+++.|+.|++|+|.++.++ +....+..|+.|...+ +.|..+|.. ..++.|+
T Consensus 390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-------~tva~~~~L~tL~ahs-N~l~~fPe~------~~l~qL~ 455 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-------DTVANLGRLHTLRAHS-NQLLSFPEL------AQLPQLK 455 (1081)
T ss_pred ecccccccCCHHHHhchHHhHHHhcccchhhhhh-------HHHHhhhhhHHHhhcC-Cceeechhh------hhcCcce
Confidence 8888888888888888888888888888887763 3455677777777766 666666531 2467777
Q ss_pred eeeeecccccccc-CCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcC
Q 037935 949 ILRVLHCQNLLSL-LPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFG 1005 (1085)
Q Consensus 949 ~L~i~~c~~l~~~-~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~ 1005 (1085)
.++++.+ ++... .+.... -++|++|+++++.++. +....+..+.++..+++.-
T Consensus 456 ~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN~~l~--~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 456 VLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGNTRLV--FDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred EEecccc-hhhhhhhhhhCC-CcccceeeccCCcccc--cchhhhHHhhhhhheeccc
Confidence 7777655 44322 222122 2577777777765433 3344455555555554443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.69 E-value=1.6e-18 Score=177.07 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=107.6
Q ss_pred ccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccccEEeccCcccccc
Q 037935 501 NSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDLTDCLQLKF 579 (1085)
Q Consensus 501 ~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~~~~l~~ 579 (1085)
+-.+.++|..+. +....+.|..|. +..||+.+|+.+++||.||||+|.|+.+ |++|.+|..|-.|-+.++.+|+.
T Consensus 55 ~~GL~eVP~~LP-~~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 55 GKGLTEVPANLP-PETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred CCCcccCcccCC-CcceEEEeccCC---cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 445666776553 466778888887 8999999999999999999999999997 88999999998888877449999
Q ss_pred cchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCc
Q 037935 580 IVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDG 642 (1085)
Q Consensus 580 lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 642 (1085)
+|.+.|++|..||.|.+.-|.+ .-.....|..|++|+.|.+..|.+..++..
T Consensus 131 l~k~~F~gL~slqrLllNan~i-----------~Cir~~al~dL~~l~lLslyDn~~q~i~~~ 182 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHI-----------NCIRQDALRDLPSLSLLSLYDNKIQSICKG 182 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhh-----------cchhHHHHHHhhhcchhcccchhhhhhccc
Confidence 9999999999999999988887 233456789999999999999988877764
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=3.7e-15 Score=175.38 Aligned_cols=115 Identities=20% Similarity=0.169 Sum_probs=67.8
Q ss_pred CccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCccccccccc
Q 037935 836 PNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKL 915 (1085)
Q Consensus 836 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l 915 (1085)
++|+.|++++|.++.++.. .++|+.|++++|+++.+|. ...+|+.|++++|+++.++.. .
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~LP~l----------~ 401 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTL------PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLPVL----------P 401 (788)
T ss_pred cccceEecCCCccCCCCCC------CcccceehhhccccccCcc----cccccceEEecCCcccCCCCc----------c
Confidence 3566677777666654321 3556666777777766653 234667777777766544321 2
Q ss_pred cccceeccCCcccccccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEecccc
Q 037935 916 ALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACK 981 (1085)
Q Consensus 916 ~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~ 981 (1085)
++|+.|++++ +.++.++. .+.+|+.|++++| ++..+ |..+..+++|+.|++++|+
T Consensus 402 s~L~~LdLS~-N~LssIP~--------l~~~L~~L~Ls~N-qLt~L-P~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSG-NRLTSLPM--------LPSGLLSLSVYRN-QLTRL-PESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccC-CcCCCCCc--------chhhhhhhhhccC-ccccc-ChHHhhccCCCeEECCCCC
Confidence 3466666666 44555543 2345666777665 45544 4446677777777777644
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=6.5e-15 Score=173.29 Aligned_cols=257 Identities=18% Similarity=0.130 Sum_probs=149.0
Q ss_pred eEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCc
Q 037935 495 YAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDC 574 (1085)
Q Consensus 495 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~ 574 (1085)
..|+++.+.++.+|..+. ++|+.|.+.+|. +..+|. .+++|++|++++|+++.+|.. .++|++|++++|
T Consensus 204 ~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~---Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP-AHITTLVIPDNN---LTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCCcCCcchh-cCCCEEEccCCc---CCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 356666777777776543 467777777766 555654 246777778877777777742 356777777777
Q ss_pred ccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcccccccceeeEE
Q 037935 575 LQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLERFDIS 654 (1085)
Q Consensus 575 ~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 654 (1085)
.++.+|.. ..+|+.|++++|.+...+ . .+++|+.|++++|.+..+|... .+|+.|.+.
T Consensus 273 -~L~~Lp~l----p~~L~~L~Ls~N~Lt~LP------------~---~p~~L~~LdLS~N~L~~Lp~lp--~~L~~L~Ls 330 (788)
T PRK15387 273 -PLTHLPAL----PSGLCKLWIFGNQLTSLP------------V---LPPGLQELSVSDNQLASLPALP--SELCKLWAY 330 (788)
T ss_pred -chhhhhhc----hhhcCEEECcCCcccccc------------c---cccccceeECCCCccccCCCCc--ccccccccc
Confidence 67777652 245667777777763221 1 2356777777777766655421 223333221
Q ss_pred ecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchhhH
Q 037935 655 IGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTI 734 (1085)
Q Consensus 655 ~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l 734 (1085)
.+ .. ..+|.. ..+|+.|+|++| .+..+|+.
T Consensus 331 ~N------------------------------------------~L-~~LP~l---p~~Lq~LdLS~N-~Ls~LP~l--- 360 (788)
T PRK15387 331 NN------------------------------------------QL-TSLPTL---PSGLQELSVSDN-QLASLPTL--- 360 (788)
T ss_pred cC------------------------------------------cc-cccccc---ccccceEecCCC-ccCCCCCC---
Confidence 10 00 012211 125566666553 33333221
Q ss_pred hhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccC
Q 037935 735 QSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQN 814 (1085)
Q Consensus 735 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~ 814 (1085)
.++|+.|++++|. +..++ ...++|+.|+++++. +..+|
T Consensus 361 --p~~L~~L~Ls~N~---------------------------------L~~LP-----~l~~~L~~LdLs~N~-Lt~LP- 398 (788)
T PRK15387 361 --PSELYKLWAYNNR---------------------------------LTSLP-----ALPSGLKELIVSGNR-LTSLP- 398 (788)
T ss_pred --Ccccceehhhccc---------------------------------cccCc-----ccccccceEEecCCc-ccCCC-
Confidence 2344555544443 11111 112346666665552 33332
Q ss_pred CCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEee
Q 037935 815 DENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLS 894 (1085)
Q Consensus 815 ~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 894 (1085)
...++|+.|++++|.++.++. + +.+|+.|++++|+++.+|.. +..+++|+.|+++
T Consensus 399 ------------------~l~s~L~~LdLS~N~LssIP~--l----~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs 453 (788)
T PRK15387 399 ------------------VLPSELKELMVSGNRLTSLPM--L----PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLE 453 (788)
T ss_pred ------------------CcccCCCEEEccCCcCCCCCc--c----hhhhhhhhhccCcccccChH-HhhccCCCeEECC
Confidence 113578888999988876542 1 35788888889999888854 5688899999999
Q ss_pred cccccEE
Q 037935 895 DCSYEVV 901 (1085)
Q Consensus 895 ~~~l~~~ 901 (1085)
+|++...
T Consensus 454 ~N~Ls~~ 460 (788)
T PRK15387 454 GNPLSER 460 (788)
T ss_pred CCCCCch
Confidence 9987653
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=1.4e-15 Score=155.79 Aligned_cols=124 Identities=21% Similarity=0.246 Sum_probs=92.0
Q ss_pred eEEEecCccccCCCccccccceEEEeeccCcccccccC--CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecC-
Q 037935 474 VFLVRNDAVWEWPDGDALKKCYAISLLNSSIHEVSLEF--ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTR- 550 (1085)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~- 550 (1085)
.+..++..+.+.|. +.+....-+.+..|.|+.+|... .+++||.|++++|. +..|.++.|.+++.|..|-+.+
T Consensus 50 ~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred eEEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccc---hhhcChHhhhhhHhhhHHHhhcC
Confidence 34455666666654 46777888999999999998754 88999999999998 7888888999999888887766
Q ss_pred CcccCCch-hhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcc
Q 037935 551 VRLFSLPS-SIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIK 602 (1085)
Q Consensus 551 ~~i~~lp~-~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~ 602 (1085)
|+|+.+|. .|++|..|+-|.+.-| .+..++.+.|..|.+|..|.+..|.+.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhh
Confidence 88999884 5667777777666666 666666666666666666655555443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=4.7e-13 Score=159.14 Aligned_cols=121 Identities=15% Similarity=0.195 Sum_probs=79.4
Q ss_pred ceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccC
Q 037935 494 CYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTD 573 (1085)
Q Consensus 494 ~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~ 573 (1085)
...|.+.+++++.+|..+ .++|+.|++.+|. +..+|..++ .+|++|++++|+++.+|..+. .+|+.|+|++
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~---LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNE---LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCC---CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 456777777777777644 2567788887776 566776544 367888888888877776554 4678888888
Q ss_pred cccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCC
Q 037935 574 CLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPD 641 (1085)
Q Consensus 574 ~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 641 (1085)
| .+..+|..+ . .+|+.|++++|.+... +..+ ..+|+.|++++|.+..+|.
T Consensus 251 N-~L~~LP~~l-~--s~L~~L~Ls~N~L~~L------------P~~l--~~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 251 N-RITELPERL-P--SALQSLDLFHNKISCL------------PENL--PEELRYLSVYDNSIRTLPA 300 (754)
T ss_pred C-ccCcCChhH-h--CCCCEEECcCCccCcc------------cccc--CCCCcEEECCCCccccCcc
Confidence 7 777777654 2 4677788877776321 1112 1367777777776655443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=3.8e-15 Score=134.53 Aligned_cols=167 Identities=23% Similarity=0.331 Sum_probs=130.2
Q ss_pred cccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchh
Q 037935 504 IHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPN 583 (1085)
Q Consensus 504 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~ 583 (1085)
+.+++..+.++++..|.+++|. ...+|+. +..+.+|++|++++|+|+++|.+|+.++.|+.|+++-| .+..+|.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNK---l~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprg 97 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNK---LTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRG 97 (264)
T ss_pred HhhcccccchhhhhhhhcccCc---eeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccc
Confidence 4556667788888888888887 6777877 66799999999999999999999999999999999998 88889988
Q ss_pred hhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc-cccccceeeEEecCCCccc
Q 037935 584 ILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL-FTKKLERFDISIGDGSFDS 662 (1085)
Q Consensus 584 ~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~ 662 (1085)
|+.++-|+.||+.+|++. ....+..|-.++.|+.|.++.|+...+|.++ .+++|+-|.+..++-
T Consensus 98 -fgs~p~levldltynnl~----------e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl---- 162 (264)
T KOG0617|consen 98 -FGSFPALEVLDLTYNNLN----------ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL---- 162 (264)
T ss_pred -cCCCchhhhhhccccccc----------cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch----
Confidence 499999999999998874 3456677777888888888888888888877 666666665543210
Q ss_pred ccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccc
Q 037935 663 TKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFS 730 (1085)
Q Consensus 663 ~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~ 730 (1085)
-.+|..++.+..|++|++.++ .+..+||
T Consensus 163 ---------------------------------------l~lpkeig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 163 ---------------------------------------LSLPKEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred ---------------------------------------hhCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence 135556667778888888774 5666654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=9.2e-13 Score=156.65 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=36.7
Q ss_pred cceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCEEe
Q 037935 516 LEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELY 595 (1085)
Q Consensus 516 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~ 595 (1085)
...|.+.++. ...+|..+ .++|+.|+|++|+++.+|..+. .+|++|++++| +++.+|..+ ..+|+.|+
T Consensus 180 ~~~L~L~~~~---LtsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l---~~~L~~L~ 247 (754)
T PRK15370 180 KTELRLKILG---LTTIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATL---PDTIQEME 247 (754)
T ss_pred ceEEEeCCCC---cCcCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhh---hccccEEE
Confidence 3445554443 34444332 1345555555555555554443 35555555555 555555432 12455555
Q ss_pred ccCCCc
Q 037935 596 MGSCSI 601 (1085)
Q Consensus 596 L~~~~~ 601 (1085)
+++|.+
T Consensus 248 Ls~N~L 253 (754)
T PRK15370 248 LSINRI 253 (754)
T ss_pred CcCCcc
Confidence 555554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.24 E-value=3.1e-13 Score=122.37 Aligned_cols=149 Identities=23% Similarity=0.333 Sum_probs=100.2
Q ss_pred ccccccceEEEeeccCcccccccC-CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccc
Q 037935 488 GDALKKCYAISLLNSSIHEVSLEF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKL 566 (1085)
Q Consensus 488 ~~~~~~~r~Lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L 566 (1085)
--.+..+.+|.+++|.+..+|..+ .+.+|++|++++|. +.++|.. ++.++.||.|+++-|++..+|..||.++-|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq---ie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ---IEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch---hhhcChh-hhhchhhhheecchhhhhcCccccCCCchh
Confidence 334456677777777777776655 66777777777766 6666665 566777777777777777777777777777
Q ss_pred cEEeccCccccc--ccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc-
Q 037935 567 RMLDLTDCLQLK--FIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL- 643 (1085)
Q Consensus 567 ~~L~Ls~~~~l~--~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~- 643 (1085)
+.|||.+| ++. .+|..+ -.|+.|+.|++++|.+. ..+..++++++|+.|.+..|++-.+|..+
T Consensus 105 evldltyn-nl~e~~lpgnf-f~m~tlralyl~dndfe------------~lp~dvg~lt~lqil~lrdndll~lpkeig 170 (264)
T KOG0617|consen 105 EVLDLTYN-NLNENSLPGNF-FYMTTLRALYLGDNDFE------------ILPPDVGKLTNLQILSLRDNDLLSLPKEIG 170 (264)
T ss_pred hhhhcccc-ccccccCCcch-hHHHHHHHHHhcCCCcc------------cCChhhhhhcceeEEeeccCchhhCcHHHH
Confidence 77777776 543 356553 56677777777777652 23455667777777777777777677666
Q ss_pred cccccceeeEE
Q 037935 644 FTKKLERFDIS 654 (1085)
Q Consensus 644 ~l~~L~~L~l~ 654 (1085)
.+..|+.|.+.
T Consensus 171 ~lt~lrelhiq 181 (264)
T KOG0617|consen 171 DLTRLRELHIQ 181 (264)
T ss_pred HHHHHHHHhcc
Confidence 56666666654
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.16 E-value=4.6e-09 Score=134.46 Aligned_cols=273 Identities=15% Similarity=0.231 Sum_probs=169.6
Q ss_pred CCccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHh
Q 037935 159 GYEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKL 237 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l 237 (1085)
....++-|....+.+-+ ....+++.|.|++|.||||++..+.+. ++.++|+++.. ..++..+...++..+
T Consensus 12 ~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred CccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 34567778765555533 245789999999999999999998853 23589999964 456677777777776
Q ss_pred CCCCCC--------------chHHHHHHHHHHHHHc-CCcEEEEEeCCCCccc--cc-ccccccCCCCCCcEEEe-----
Q 037935 238 GLELSD--------------EAEYRRASRLYERLKN-ENKILVILDNIWKYLD--LD-TIGIPFGNDHEGYNFLI----- 294 (1085)
Q Consensus 238 ~~~~~~--------------~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~~--~~-~~~~~~~~~~~gs~ilv----- 294 (1085)
+..... ......+..+...+.. +.+++||+||+...++ .. .+...+.....+.+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 421110 1111223344444433 7899999999976421 11 12111111122223323
Q ss_pred -----------------c----CCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHHHHhcCCHHHHH
Q 037935 295 -----------------G----NLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVARALRNKSLHEWK 353 (1085)
Q Consensus 295 -----------------~----~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~ 353 (1085)
+ +|+.+|+.++|....+... -.+...+|.+.|+|.|+++..++..+...... ..
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~ 237 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNNSS-LH 237 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hh
Confidence 2 8999999999988775322 25667899999999999999888776533110 00
Q ss_pred HHHHHhcCCCCCCCCC-CcccchhhHH-HHHhcCChHHHHHHHHhccccCCCCCHHHHHHHHhhcCCCCCCchHHHHHHH
Q 037935 354 NALRELQTPSVVNFEG-VPAETYSSIE-LSFKYLKGEQLKKIFLLCSLIGNSFYLIDLLRYSMGLGLFHGVNKMEDARNK 431 (1085)
Q Consensus 354 ~~~~~l~~~~~~~~~~-~~~~~~~~l~-~sy~~L~~~~~k~cf~~~s~fp~~i~~~~li~~w~~~g~~~~~~~~~~~~~~ 431 (1085)
.....+ .+ ....+...+. -.++.||+ ..+..+...|+++ .|+.+-+-... | . .+.
T Consensus 238 ~~~~~~--------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~-~~~~~l~~~l~---~---~----~~~--- 294 (903)
T PRK04841 238 DSARRL--------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR-SMNDALIVRVT---G---E----ENG--- 294 (903)
T ss_pred hhhHhh--------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc-cCCHHHHHHHc---C---C----CcH---
Confidence 111111 11 1123444433 34889997 6999999999987 56654333221 1 1 111
Q ss_pred HHHHHHHHhHccccee-c-CCcceEEEcHHHHHHHHHHhh
Q 037935 432 LYALVHELRDCCLLLE-G-DRNETFYMHDVVCDVAVSIAC 469 (1085)
Q Consensus 432 ~~~~~~~L~~~~ll~~-~-~~~~~~~mHdl~~~~~~~~~~ 469 (1085)
.+.+++|.+++++.. . +...+|+.|++++++++....
T Consensus 295 -~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 295 -QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred -HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 234788889998653 2 334589999999999987753
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.13 E-value=6.4e-13 Score=137.99 Aligned_cols=138 Identities=22% Similarity=0.239 Sum_probs=71.9
Q ss_pred cccccceeccCCcccccccccCCCchhhhHhhhhceeeeecccccccc-CCCCcccccCccEEEeccccCcccccc---h
Q 037935 914 KLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSL-LPSSSVSFRNLTRLETFACKKLMNLLT---S 989 (1085)
Q Consensus 914 ~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~-~~~~l~~l~~L~~L~l~~c~~L~~l~~---~ 989 (1085)
+.++|+.|.++.|..++...... ..-.++.|+.+++..|...... .-.--.+++.|+.|.+++|.-+++... .
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~---l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTM---LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred CCCceEEEeccccchhhhhhhhh---hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 34555555555555433332111 1234566666666666433221 111123466677777777766655411 1
Q ss_pred hhhhhcccccEEEEcCCcccccccccccccccccccceeeccccccccccccccceecCCCccccCCCcCceee
Q 037935 990 SKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSKLSALSLFDLDSLTSFSSGNYAFKLPSLQDLWV 1063 (1085)
Q Consensus 990 ~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i 1063 (1085)
....+...|+.|.+.+||.+++-.. ......++|+.+++.+|...+.-+...+..++|+++....
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~L---------e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATL---------EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hccccccccceeeecCCCCchHHHH---------HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 1224456677777777776655422 1222356777777777777665555444556666655443
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.13 E-value=1.7e-08 Score=115.32 Aligned_cols=269 Identities=16% Similarity=0.121 Sum_probs=159.0
Q ss_pred CCccccchHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHH
Q 037935 159 GYEAFESRVSTLKSIQNALT----DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
.++.++||+++++++...+. ......+.|+|++|+|||++++.++++.......-.++++++....+...++..++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 45679999999999998874 23446688999999999999999999876543223467777777778889999999
Q ss_pred HHhCCC-C--CCchHHHHHHHHHHHHH-cCCcEEEEEeCCCCcc------cccccccccCCCCCCcE-------------
Q 037935 235 EKLGLE-L--SDEAEYRRASRLYERLK-NENKILVILDNIWKYL------DLDTIGIPFGNDHEGYN------------- 291 (1085)
Q Consensus 235 ~~l~~~-~--~~~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~~------~~~~~~~~~~~~~~gs~------------- 291 (1085)
.++... . ...+..+....+.+.+. .+++.+||+|+++... .+..+..... ...+++
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchh
Confidence 999752 1 12223344455555554 3567899999998642 1111111111 111222
Q ss_pred ---------------EEecCCCHHHHHHHHHHhcCCCC-CCCCchHHHHHHHHHh----CCchHHHHHHHHHHh-----c
Q 037935 292 ---------------FLIGNLSEEEAWRLFKIMNGDDV-ENCKFKPTAINVAQAC----GGLPIALTTVARALR-----N 346 (1085)
Q Consensus 292 ---------------ilv~~l~~~~~~~lf~~~~~~~~-~~~~~~~~~~~i~~~~----~glPlai~~~~~~l~-----~ 346 (1085)
|.+.|++.++..+++..++.... ...-..+..+.|++.+ |..+.|+.++-.... +
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 22388999999999988762111 1111234444455444 557777766543321 1
Q ss_pred ---CCHHHHHHHHHHhcCCCCCCCCCCcccchhhHHHHHhcCChHHHHHHHHhcc-ccC---CCCCHHHHHHH--HhhcC
Q 037935 347 ---KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCS-LIG---NSFYLIDLLRY--SMGLG 417 (1085)
Q Consensus 347 ---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s-~fp---~~i~~~~li~~--w~~~g 417 (1085)
-+.+++..+.+.+. .....-.++.||. +.|..+..++ ... ..+...++... .+++.
T Consensus 267 ~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 16677777776541 1223446789996 3333333222 222 12566665543 23322
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhHccccee
Q 037935 418 LFHGVNKMEDARNKLYALVHELRDCCLLLE 447 (1085)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 447 (1085)
+-...- ....+.+++++|...+++..
T Consensus 332 ~~~~~~----~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 332 LGYEPR----THTRFYEYINKLDMLGIINT 357 (394)
T ss_pred cCCCcC----cHHHHHHHHHHHHhcCCeEE
Confidence 111000 12345567888888888864
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=1.9e-10 Score=139.33 Aligned_cols=290 Identities=23% Similarity=0.293 Sum_probs=175.5
Q ss_pred cccceEEEeeccC--cccccc--cCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccc
Q 037935 491 LKKCYAISLLNSS--IHEVSL--EFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKL 566 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~--~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L 566 (1085)
..+++.|-+..+. +..++. +..++.||+|++++|.. ..++|.. ++++-+||||+++++.+..+|..+++|+.|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~--l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS--LSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc--cCcCChH-HhhhhhhhcccccCCCccccchHHHHHHhh
Confidence 3368899998886 666665 34799999999999876 7888875 889999999999999999999999999999
Q ss_pred cEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCccccc
Q 037935 567 RMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTK 646 (1085)
Q Consensus 567 ~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~ 646 (1085)
.|||+.++..+..+ +++...|.+|++|.+...... .......++.+|.+|+.+.+.......+-....+.
T Consensus 621 ~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~---------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~ 690 (889)
T KOG4658|consen 621 IYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALS---------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMT 690 (889)
T ss_pred heeccccccccccc-cchhhhcccccEEEeeccccc---------cchhhHHhhhcccchhhheeecchhHhHhhhhhhH
Confidence 99999999555555 455578999999999776521 13456677778888887777544431111111333
Q ss_pred ccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCc-----cc-ccccccEEEEc
Q 037935 647 KLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAM-----VP-CFQSLTRLIVW 720 (1085)
Q Consensus 647 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~-----~~-~l~~L~~L~L~ 720 (1085)
.|..+........ .....+ +..+..+..|+.+.+..+........| .. .|+++..+.+.
T Consensus 691 ~L~~~~~~l~~~~-~~~~~~--------------~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~ 755 (889)
T KOG4658|consen 691 RLRSLLQSLSIEG-CSKRTL--------------ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSIL 755 (889)
T ss_pred HHHHHhHhhhhcc-ccccee--------------ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhh
Confidence 3332221110000 000111 111222222333333322221111111 01 24456666666
Q ss_pred CCCCCccccchhhHhhcccccEEEeccccchHHHhccCCccccc--ccccCCcccEE-ecCCCCccccccCCCcccCCCc
Q 037935 721 GCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVT--AYFVFPRVTTL-KLDGLPELRCLYPGMHTSEWPA 797 (1085)
Q Consensus 721 ~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~--~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~ 797 (1085)
+|.....+. +....|+|+.|.+.+|..++.+.......... ....|.++..+ .+.+.+.+..+... +..++.
T Consensus 756 ~~~~~r~l~---~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~--~l~~~~ 830 (889)
T KOG4658|consen 756 NCHMLRDLT---WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWL--PLSFLK 830 (889)
T ss_pred ccccccccc---hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEec--ccCccc
Confidence 665555532 24455777777777777665543322111110 12346666666 46666666655444 345677
Q ss_pred ccceeeccCCCccccc
Q 037935 798 LKNLVACNCDKITLSQ 813 (1085)
Q Consensus 798 L~~L~i~~c~~L~~~~ 813 (1085)
|+.+.+..||++...|
T Consensus 831 l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 831 LEELIVEECPKLGKLP 846 (889)
T ss_pred hhheehhcCcccccCc
Confidence 9999999999988754
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.07 E-value=1.6e-08 Score=108.86 Aligned_cols=163 Identities=16% Similarity=0.202 Sum_probs=106.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHH----
Q 037935 179 DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLY---- 254 (1085)
Q Consensus 179 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~---- 254 (1085)
..+.+++.|+|++|+||||+++.+++...... + .++|+ +....+..++++.++..++.+............+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999999998865321 1 23343 33456778899999999987654433332223332
Q ss_pred HHHHcCCcEEEEEeCCCCcc--cccccccccC---CCCCC------------------------c----EEEecCCCHHH
Q 037935 255 ERLKNENKILVILDNIWKYL--DLDTIGIPFG---NDHEG------------------------Y----NFLIGNLSEEE 301 (1085)
Q Consensus 255 ~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~---~~~~g------------------------s----~ilv~~l~~~~ 301 (1085)
.....+++.++|+||++... .++.+..... ..... + ++-+++++.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 22336888999999998753 2333221110 00000 1 12238999999
Q ss_pred HHHHHHHhcCC---CCCCCCchHHHHHHHHHhCCchHHHHHHHHHH
Q 037935 302 AWRLFKIMNGD---DVENCKFKPTAINVAQACGGLPIALTTVARAL 344 (1085)
Q Consensus 302 ~~~lf~~~~~~---~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 344 (1085)
..+++...... .....-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999877631 11122346788999999999999999988876
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.1e-10 Score=112.64 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=46.8
Q ss_pred ccCcccccccCCCCCcceeeeccCCCccccccChhhhc-CCCcceEEEecCCcccCCchhhhccccccEEeccCcccccc
Q 037935 501 NSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFK-GMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKF 579 (1085)
Q Consensus 501 ~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~-~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~ 579 (1085)
.+-|..++...++.++|.|++.+|. +..+.. +. .+.+|++|+|++|.|+.++ .+..+++|++|++++| .++.
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~---I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~ 78 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQ---ISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISS 78 (175)
T ss_dssp ---------------------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S
T ss_pred ccccccccccccccccccccccccc---cccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCc
Confidence 3445555666666677778887776 455443 33 4677888888888887775 4777888888888888 7887
Q ss_pred cchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc-----cccccceeeEE
Q 037935 580 IVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL-----FTKKLERFDIS 654 (1085)
Q Consensus 580 lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-----~l~~L~~L~l~ 654 (1085)
+++.+...+++|++|++++|.+. .-..+..+..+++|+.|++.+|.+...+..- .+++|+.|+-.
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~----------~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKIS----------DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS-------------SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cccchHHhCCcCCEEECcCCcCC----------ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 76554346788888888888773 2234566777888888888877776554321 56666666543
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=8.8e-11 Score=130.58 Aligned_cols=91 Identities=20% Similarity=0.158 Sum_probs=52.8
Q ss_pred hhhcCCCcceEEEecCCcccC-----CchhhhccccccEEeccCcccccccch------hhhhccccCCEEeccCCCcch
Q 037935 535 NFFKGMKKLRVVDLTRVRLFS-----LPSSIGQLTKLRMLDLTDCLQLKFIVP------NILSSFTRLEELYMGSCSIKW 603 (1085)
Q Consensus 535 ~~~~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~L~~L~Ls~~~~l~~lp~------~~~~~L~~L~~L~L~~~~~~~ 603 (1085)
..|..+..|++|+++++.++. ++..+...++|++|+++++ .+...+. ..+.++++|++|++++|.+.
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~- 94 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG- 94 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCC-
Confidence 345666677777777777632 4555666667777777776 4442111 22466777777777777662
Q ss_pred hhcccCCccccccHHHhhcC---CCCcEEEEEeccCC
Q 037935 604 EVRKGNSERSNASLDELMHL---QRLTTLEIDVEDDS 637 (1085)
Q Consensus 604 ~~~~~~~~~~~~~~~~l~~L---~~L~~L~l~~~~~~ 637 (1085)
......+..+ ++|++|++++|.+.
T Consensus 95 ----------~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 95 ----------PDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred ----------hhHHHHHHHHhccCcccEEEeeCCccc
Confidence 1122233333 33777777766543
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.02 E-value=1.2e-11 Score=128.78 Aligned_cols=293 Identities=20% Similarity=0.236 Sum_probs=190.4
Q ss_pred cccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccC
Q 037935 709 PCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYP 788 (1085)
Q Consensus 709 ~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 788 (1085)
..++++++|.+.+|..+++-.-...-..+++|++|++..|..+....-.... ..+++|++|+++.|+....--.
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la------~gC~kL~~lNlSwc~qi~~~gv 234 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA------EGCRKLKYLNLSWCPQISGNGV 234 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH------HhhhhHHHhhhccCchhhcCcc
Confidence 4678999999999987776433334457899999999999888766433211 1489999999999987776222
Q ss_pred CCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCC-ceeeecccCCcCccCCceEE
Q 037935 789 GMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKD-ITMILQDDFPQHLFGSLKQL 867 (1085)
Q Consensus 789 ~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L 867 (1085)
.........++++...+|..+..- .+.....+++-+..+++.+|. +++.....+.. .+..|+.|
T Consensus 235 ~~~~rG~~~l~~~~~kGC~e~~le--------------~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~-~c~~lq~l 299 (483)
T KOG4341|consen 235 QALQRGCKELEKLSLKGCLELELE--------------ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC-GCHALQVL 299 (483)
T ss_pred hHHhccchhhhhhhhcccccccHH--------------HHHHHhccChHhhccchhhhccccchHHHHHhh-hhhHhhhh
Confidence 222233445666666677655432 222334556777788877887 66544322222 26788999
Q ss_pred Eec-CCcccccchhHH-hhccccceEEeeccc-ccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHh
Q 037935 868 RVG-DDDLACFPLDLL-ERFHNLEFLYLSDCS-YEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIF 944 (1085)
Q Consensus 868 ~l~-~n~l~~~~~~~~-~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l 944 (1085)
..+ ++.++..+...+ .+.++|+.|.++.|+ ++.. ++.. --.+.+.|+.+++.+|.....-.... ....+
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~----~ft~-l~rn~~~Le~l~~e~~~~~~d~tL~s---ls~~C 371 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR----GFTM-LGRNCPHLERLDLEECGLITDGTLAS---LSRNC 371 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh----hhhh-hhcCChhhhhhcccccceehhhhHhh---hccCC
Confidence 988 677776654444 478999999999999 3332 2111 11356788999988876554432211 23468
Q ss_pred hhhceeeeecccccccc----CCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccccccccc
Q 037935 945 QHLQILRVLHCQNLLSL----LPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDEDET 1020 (1085)
Q Consensus 945 ~~L~~L~i~~c~~l~~~----~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~ 1020 (1085)
+.|+.|.++.|..+++. ...+-.+...|..|.+++|+.+++- ....+..+++|+.+++.+|..+..-...
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c~~Leri~l~~~q~vtk~~i~----- 445 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-TLEHLSICRNLERIELIDCQDVTKEAIS----- 445 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-HHHHHhhCcccceeeeechhhhhhhhhH-----
Confidence 99999999999766443 1222345667999999999988765 4566778889999999999876554321
Q ss_pred cccccceeecccccccccc
Q 037935 1021 ANLKEEIVFSKLSALSLFD 1039 (1085)
Q Consensus 1021 ~~~~~~~~~~~L~~L~l~~ 1039 (1085)
+....+|+++...+..
T Consensus 446 ---~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 446 ---RFATHLPNIKVHAYFA 461 (483)
T ss_pred ---HHHhhCccceehhhcc
Confidence 1222356666655443
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.91 E-value=3.9e-09 Score=111.39 Aligned_cols=175 Identities=23% Similarity=0.323 Sum_probs=95.5
Q ss_pred ccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHH---------HH
Q 037935 163 FESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQG---------EI 233 (1085)
Q Consensus 163 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---------~i 233 (1085)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+..+... + .++|+............. .+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 789999999999999876678999999999999999999999874321 1 244444433332221111 11
Q ss_pred HHHh----CCCC-------CCchHHHHHHHHHHHHH-cCCcEEEEEeCCCCcc-ccc---c----ccccc---CCCCCC-
Q 037935 234 AEKL----GLEL-------SDEAEYRRASRLYERLK-NENKILVILDNIWKYL-DLD---T----IGIPF---GNDHEG- 289 (1085)
Q Consensus 234 ~~~l----~~~~-------~~~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~~-~~~---~----~~~~~---~~~~~g- 289 (1085)
.+.+ .... ...........+.+.+. .+++.+||+||+.... ..+ . +...+ ....+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 1112 1110 11222334555666655 3456999999987655 111 1 11111 111111
Q ss_pred -------------------------cEEEecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHH
Q 037935 290 -------------------------YNFLIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTT 339 (1085)
Q Consensus 290 -------------------------s~ilv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 339 (1085)
..+-+++++.+++++++.....+...-+.-.+..++|+..+||.|..|..
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 22333999999999999997632211122356679999999999998754
No 32
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.90 E-value=4.2e-07 Score=102.70 Aligned_cols=269 Identities=16% Similarity=0.164 Sum_probs=155.0
Q ss_pred CccccchHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhc-cCC---CEEEEEEeCCCcCHHHHHH
Q 037935 160 YEAFESRVSTLKSIQNALT----DVNVSIIGVYGMGGIGKTTLVKEFARQAREK-KLF---DRVVFSEVSQTPDIKKIQG 231 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~~~ 231 (1085)
++.++||+.++++|..++. ....+.+.|+|++|+|||++++.+++..... ... -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 4579999999999999886 2344678999999999999999999876432 111 1467888877778889999
Q ss_pred HHHHHh---CCCCC--CchHHHHHHHHHHHHH-cCCcEEEEEeCCCCcc-ccc----cccccc-CCCCCCc---------
Q 037935 232 EIAEKL---GLELS--DEAEYRRASRLYERLK-NENKILVILDNIWKYL-DLD----TIGIPF-GNDHEGY--------- 290 (1085)
Q Consensus 232 ~i~~~l---~~~~~--~~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~~-~~~----~~~~~~-~~~~~gs--------- 290 (1085)
.|++++ +.... ..+..+....+.+.+. .+++++||+|+++... ..+ .+.... .....++
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999998 33221 1223333455555554 3678899999998761 111 111100 0011111
Q ss_pred -------------------EEEecCCCHHHHHHHHHHhcC---C-CCCCCCchHHHHHHHHHhCCchHHH-HHHHHHH--
Q 037935 291 -------------------NFLIGNLSEEEAWRLFKIMNG---D-DVENCKFKPTAINVAQACGGLPIAL-TTVARAL-- 344 (1085)
Q Consensus 291 -------------------~ilv~~l~~~~~~~lf~~~~~---~-~~~~~~~~~~~~~i~~~~~glPlai-~~~~~~l-- 344 (1085)
.|.+.|.+.++..+++..++. . ....++..+....++....|-|..+ .++-...
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 233388899999999988763 1 1111222233445566666777433 3322211
Q ss_pred h---c---CCHHHHHHHHHHhcCCCCCCCCCCcccchhhHHHHHhcCChHHHHHHHHhcccc---CCC-CCHHHHHHHH-
Q 037935 345 R---N---KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI---GNS-FYLIDLLRYS- 413 (1085)
Q Consensus 345 ~---~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~f---p~~-i~~~~li~~w- 413 (1085)
. + .+.++.+.+.+.+. .....-++..||. +.+..+..++.. ... +...++...+
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 1 1 25666666665431 1223345678886 455444433311 222 6777766632
Q ss_pred -hhcCCCCCCchHHHHHHHHHHHHHHHhHccccee
Q 037935 414 -MGLGLFHGVNKMEDARNKLYALVHELRDCCLLLE 447 (1085)
Q Consensus 414 -~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 447 (1085)
+++.+--. .-....+.+++.+|...|++..
T Consensus 319 ~~~~~~~~~----~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 319 EVCEDIGVD----PLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHHhcCCC----CCcHHHHHHHHHHHHhcCCeEE
Confidence 22211100 1112445667888888998864
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=2.8e-09 Score=102.81 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=57.3
Q ss_pred ccceEEEeeccCcccccccC-CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhh-hccccccEE
Q 037935 492 KKCYAISLLNSSIHEVSLEF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSI-GQLTKLRML 569 (1085)
Q Consensus 492 ~~~r~Lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L 569 (1085)
.+.+.|++.++.|..+.... .+.+|++|++++|. +.+++. +..++.|++|++++|.|+.++..+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~---I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ---ITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS-----S--TT------TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCC---CccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 35789999999999987654 57899999999998 777765 788999999999999999997666 469999999
Q ss_pred eccCcccccccch-hhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEe
Q 037935 570 DLTDCLQLKFIVP-NILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDV 633 (1085)
Q Consensus 570 ~Ls~~~~l~~lp~-~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 633 (1085)
++++| +|..+.. ..++.+++|++|++.+|++... ......-+..+++|+.||-..
T Consensus 94 ~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~--------~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 94 YLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK--------KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS--------TTHHHHHHHH-TT-SEETTEE
T ss_pred ECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch--------hhHHHHHHHHcChhheeCCEE
Confidence 99999 8876543 2367899999999999998421 233445578899999998653
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=1.3e-09 Score=121.27 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=57.6
Q ss_pred EEEecCCccc--CCchhhhccccccEEeccCccccc-----ccchhhhhccccCCEEeccCCCcchhhcccCCccccccH
Q 037935 545 VVDLTRVRLF--SLPSSIGQLTKLRMLDLTDCLQLK-----FIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASL 617 (1085)
Q Consensus 545 ~L~Ls~~~i~--~lp~~i~~L~~L~~L~Ls~~~~l~-----~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 617 (1085)
.|+|.++.++ ..+..+..+.+|++|++++| .++ .++.. +...++|++|+++++.+...+. .....+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~-----~~~~~~ 74 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPR-----GLQSLL 74 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHH-HhhCCCceEEeccccccCCcch-----HHHHHH
Confidence 4667777665 24566778888999999998 663 34443 4677889999998887631000 012234
Q ss_pred HHhhcCCCCcEEEEEeccCC
Q 037935 618 DELMHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 618 ~~l~~L~~L~~L~l~~~~~~ 637 (1085)
..+..+++|+.|+++++.+.
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHhcCceeEEEccCCCCC
Confidence 55677888999988887665
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.71 E-value=1.4e-06 Score=100.98 Aligned_cols=114 Identities=20% Similarity=0.208 Sum_probs=80.2
Q ss_pred CccccchHHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHHHHhhc---cCCC--EEEEEEeCCCcCHHHH
Q 037935 160 YEAFESRVSTLKSIQNALTD-----VNVSIIGVYGMGGIGKTTLVKEFARQAREK---KLFD--RVVFSEVSQTPDIKKI 229 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~f~--~~~wv~~~~~~~~~~~ 229 (1085)
++.+.|||+++++|...|.. ....++.|+|.+|+|||++++.|.+..... .... .+++|++..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45688999999999988762 223577899999999999999998876421 1222 2567877777788999
Q ss_pred HHHHHHHhCCCCC--CchHHHHHHHHHHHHHc--CCcEEEEEeCCCCc
Q 037935 230 QGEIAEKLGLELS--DEAEYRRASRLYERLKN--ENKILVILDNIWKY 273 (1085)
Q Consensus 230 ~~~i~~~l~~~~~--~~~~~~~~~~~~~~l~~--~~~~LlvlDdv~~~ 273 (1085)
+..|++++..... .....+.+..++..+.. ....+||||+|+..
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 9999998844322 22233445566665531 33468999999864
No 36
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.69 E-value=2e-06 Score=99.14 Aligned_cols=275 Identities=19% Similarity=0.218 Sum_probs=173.9
Q ss_pred CCCccccchHHHHHHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHH
Q 037935 158 KGYEAFESRVSTLKSIQNALTD-VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAE 235 (1085)
Q Consensus 158 ~~~~~~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~ 235 (1085)
..+...+-|.. +++.|.+ .+.+.+.|..++|.||||++.+.......+ ..+.|.++.. ..++..+.+-++.
T Consensus 16 ~~~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~---~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 16 VRPDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADG---AAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCcccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCcc---cceeEeecCCccCCHHHHHHHHHH
Confidence 33455666765 4454543 478999999999999999999998733322 3599999965 4578888888888
Q ss_pred HhCCCCCCc--------------hHHHHHHHHHHHHH-cCCcEEEEEeCCCCcc--cc-cccccccCCCCCCcEEEe---
Q 037935 236 KLGLELSDE--------------AEYRRASRLYERLK-NENKILVILDNIWKYL--DL-DTIGIPFGNDHEGYNFLI--- 294 (1085)
Q Consensus 236 ~l~~~~~~~--------------~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~~--~~-~~~~~~~~~~~~gs~ilv--- 294 (1085)
.++.-.... +-...+..++..+. -.++..+||||-.-.. .. ..+...+.....+-..+|
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 886322211 11123344455443 3678999999964331 12 222222333334445554
Q ss_pred -----------------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHHHHh-cCCHH
Q 037935 295 -----------------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVARALR-NKSLH 350 (1085)
Q Consensus 295 -----------------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~-~~~~~ 350 (1085)
=.++.+|+-++|....+..-+ ....+.+.+...|-+-|+..++=.++ +.+.+
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 457899999999888743322 55678899999999999988887776 33333
Q ss_pred HHHHHHHHhcCCCCCCCCCCcccch-hhHHHHHhcCChHHHHHHHHhccccCCCCCHHHHHHHHhhcCCCCCCchHHHHH
Q 037935 351 EWKNALRELQTPSVVNFEGVPAETY-SSIELSFKYLKGEQLKKIFLLCSLIGNSFYLIDLLRYSMGLGLFHGVNKMEDAR 429 (1085)
Q Consensus 351 ~w~~~~~~l~~~~~~~~~~~~~~~~-~~l~~sy~~L~~~~~k~cf~~~s~fp~~i~~~~li~~w~~~g~~~~~~~~~~~~ 429 (1085)
.-...+. +..+-+. ....--++.||+ .++..+.-||++++- -+.|+..--+ .
T Consensus 245 q~~~~Ls-----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f--~~eL~~~Ltg-------------~ 297 (894)
T COG2909 245 QSLRGLS-----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF--NDELCNALTG-------------E 297 (894)
T ss_pred HHhhhcc-----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh--hHHHHHHHhc-------------C
Confidence 3222111 1111111 122344788998 699999999998752 1223222100 1
Q ss_pred HHHHHHHHHHhHccccee--cCCcceEEEcHHHHHHHHHHhhc
Q 037935 430 NKLYALVHELRDCCLLLE--GDRNETFYMHDVVCDVAVSIACR 470 (1085)
Q Consensus 430 ~~~~~~~~~L~~~~ll~~--~~~~~~~~mHdl~~~~~~~~~~~ 470 (1085)
+...+.+++|.+++++.. .+..++|+-|.++.||.+..-+.
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 122345889999998753 35678999999999999876554
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=4.2e-09 Score=110.66 Aligned_cols=216 Identities=16% Similarity=0.183 Sum_probs=128.4
Q ss_pred ccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCC
Q 037935 710 CFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPG 789 (1085)
Q Consensus 710 ~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 789 (1085)
.+.+|+.+.|.+|. ....+.......|++++.|+++.|-. ..+..-.. -...+|+|+.|+++.. .+......
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~-~nw~~v~~-----i~eqLp~Le~LNls~N-rl~~~~~s 190 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLF-HNWFPVLK-----IAEQLPSLENLNLSSN-RLSNFISS 190 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhH-HhHHHHHH-----HHHhcccchhcccccc-cccCCccc
Confidence 56677888887764 23222113456788888888877652 11110000 0014788888888763 33333344
Q ss_pred CcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEe
Q 037935 790 MHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRV 869 (1085)
Q Consensus 790 ~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l 869 (1085)
.....++.|++|.++.|.-- . ..+..+...+|+|+.|++..|....+ ..++...+..|+.|+|
T Consensus 191 ~~~~~l~~lK~L~l~~CGls-~--------------k~V~~~~~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLS-W--------------KDVQWILLTFPSLEVLYLEANEIILI--KATSTKILQTLQELDL 253 (505)
T ss_pred cchhhhhhhheEEeccCCCC-H--------------HHHHHHHHhCCcHHHhhhhcccccce--ecchhhhhhHHhhccc
Confidence 44556788888888888421 1 01122335589999999999862211 2223333678899999
Q ss_pred cCCcccccch-hHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhhc
Q 037935 870 GDDDLACFPL-DLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQ 948 (1085)
Q Consensus 870 ~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~ 948 (1085)
++|++..++. .....++.|+.|+++.|.+.++....+...+-...+++|++|.+.. +++..++.-.. ...+++|+
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~---l~~l~nlk 329 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNH---LRTLENLK 329 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccch---hhccchhh
Confidence 9888877662 2346788999999999888777554444444456678888888877 55544433211 12345555
Q ss_pred eeeeec
Q 037935 949 ILRVLH 954 (1085)
Q Consensus 949 ~L~i~~ 954 (1085)
.|.+..
T Consensus 330 ~l~~~~ 335 (505)
T KOG3207|consen 330 HLRITL 335 (505)
T ss_pred hhhccc
Confidence 555543
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=5.8e-09 Score=103.68 Aligned_cols=137 Identities=17% Similarity=0.179 Sum_probs=113.6
Q ss_pred ccccccceEEEeeccCcccccccC-CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccc
Q 037935 488 GDALKKCYAISLLNSSIHEVSLEF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKL 566 (1085)
Q Consensus 488 ~~~~~~~r~Lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L 566 (1085)
.+.|+.+..+++++|.|+.+..+. -.+.+|.|++++|. +..+.. +..+.+|..||||+|.++++-.+=.+|-|.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~---i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR---IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNI 354 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccc---eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCE
Confidence 356778899999999999887776 56899999999997 555544 677899999999999998887777889999
Q ss_pred cEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCc
Q 037935 567 RMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDG 642 (1085)
Q Consensus 567 ~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 642 (1085)
++|.|+.| .+..+.. +++|++|..||+++|.+.. -.....+++|+-|.++.+.+|.+..+++.
T Consensus 355 KtL~La~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~----------ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 355 KTLKLAQN-KIETLSG--LRKLYSLVNLDLSSNQIEE----------LDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred eeeehhhh-hHhhhhh--hHhhhhheeccccccchhh----------HHHhcccccccHHHHHhhcCCCccccchH
Confidence 99999999 8888875 6999999999999999852 23456678899999999999988777653
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.58 E-value=4e-08 Score=77.67 Aligned_cols=60 Identities=28% Similarity=0.481 Sum_probs=45.5
Q ss_pred CcceEEEecCCcccCCc-hhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCc
Q 037935 541 KKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSI 601 (1085)
Q Consensus 541 ~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~ 601 (1085)
++|++|++++|+++.+| ..|.++++|++|++++| .++.+|++.|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35777788888777776 46677888888888877 77777777777888888888877753
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=1.2e-08 Score=101.46 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=52.0
Q ss_pred CcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHh
Q 037935 541 KKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDEL 620 (1085)
Q Consensus 541 ~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l 620 (1085)
+.|+.||||+|.|+.+..++.-++.+|.|++|+| .+..+.. +..|++|++|||++|.+... ...=
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~~------------~Gwh 348 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAEC------------VGWH 348 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHhh------------hhhH
Confidence 4567777777777777767766777777777777 6666654 46777777777777765211 1112
Q ss_pred hcCCCCcEEEEEeccCC
Q 037935 621 MHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 621 ~~L~~L~~L~l~~~~~~ 637 (1085)
.+|-+.++|.++.|.+.
T Consensus 349 ~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIE 365 (490)
T ss_pred hhhcCEeeeehhhhhHh
Confidence 34556666666666544
No 41
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.53 E-value=3.6e-06 Score=92.35 Aligned_cols=246 Identities=15% Similarity=0.075 Sum_probs=134.7
Q ss_pred ccccchHHHHHHHHHHhc-----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALT-----DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAE 235 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 235 (1085)
..|+|++..++.+..++. ......+.++|++|+|||+||+.+.+..... + ..+..+...... .+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~-~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPG-DLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCch-hHHHHHH
Confidence 468999999999888876 2345678899999999999999999987532 2 122222111222 2223333
Q ss_pred HhCCCC-------CCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcccccccccc----------------cCCCCCCcEE
Q 037935 236 KLGLEL-------SDEAEYRRASRLYERLKNENKILVILDNIWKYLDLDTIGIP----------------FGNDHEGYNF 292 (1085)
Q Consensus 236 ~l~~~~-------~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~~~~~----------------~~~~~~gs~i 292 (1085)
.++... .... ....+.+...+ .+.+..+|+|+..+...|.....+ +.. .-+-.+
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s-R~~~~~ 154 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAM-EDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD-RFGIIL 154 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHH-hhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh-hcceEE
Confidence 343221 0001 11122333333 356667788876555433221110 000 012233
Q ss_pred EecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHHHHh------c---CCHHHHHHHHHHhcCCC
Q 037935 293 LIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVARALR------N---KSLHEWKNALRELQTPS 363 (1085)
Q Consensus 293 lv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~------~---~~~~~w~~~~~~l~~~~ 363 (1085)
-+++++.++..+++...+... ...-.++....|++.|+|.|-.+..++..+. + .+.+..+.++
T Consensus 155 ~l~~l~~~e~~~il~~~~~~~-~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l------- 226 (305)
T TIGR00635 155 RLEFYTVEELAEIVSRSAGLL-NVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKAL------- 226 (305)
T ss_pred EeCCCCHHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHH-------
Confidence 459999999999999887522 1223356778999999999976654444321 0 0222222222
Q ss_pred CCCCCCCcccchhhHHHHHhcCChHHHHHHHH-hccccCCC-CCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHH-HHh
Q 037935 364 VVNFEGVPAETYSSIELSFKYLKGEQLKKIFL-LCSLIGNS-FYLIDLLRYSMGLGLFHGVNKMEDARNKLYALVH-ELR 440 (1085)
Q Consensus 364 ~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~-~~s~fp~~-i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~-~L~ 440 (1085)
..+...|..++. +.+..+. ..+.++.+ +..+.+.... |. +...+ ...++ .|+
T Consensus 227 ------------~~l~~~~~~l~~-~~~~~L~al~~~~~~~~~~~~~ia~~l---g~-----~~~~~----~~~~e~~Li 281 (305)
T TIGR00635 227 ------------EMLMIDELGLDE-IDRKLLSVLIEQFQGGPVGLKTLAAAL---GE-----DADTI----EDVYEPYLL 281 (305)
T ss_pred ------------HHhCCCCCCCCH-HHHHHHHHHHHHhCCCcccHHHHHHHh---CC-----CcchH----HHhhhHHHH
Confidence 223445677775 4444444 55666544 6665554431 11 11122 22356 588
Q ss_pred Hcccceec
Q 037935 441 DCCLLLEG 448 (1085)
Q Consensus 441 ~~~ll~~~ 448 (1085)
+.+|++..
T Consensus 282 ~~~li~~~ 289 (305)
T TIGR00635 282 QIGFLQRT 289 (305)
T ss_pred HcCCcccC
Confidence 99999754
No 42
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.51 E-value=4.8e-06 Score=91.83 Aligned_cols=257 Identities=13% Similarity=0.107 Sum_probs=136.4
Q ss_pred CccccchHHHHHHHHHHhc-----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHH
Q 037935 160 YEAFESRVSTLKSIQNALT-----DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
-.+|+||+..++.+..++. ......+.|+|++|+|||++|+.+++..... + .++..+ .......+..++
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecc-cccChHHHHHHH
Confidence 3569999999998877765 2345688999999999999999999987642 2 122221 112222333444
Q ss_pred HHhCCCC----CCch--HHHHHHHHHHHHHcCCcEEEEEeCCCCccccc----------------ccccccCCCCCCcEE
Q 037935 235 EKLGLEL----SDEA--EYRRASRLYERLKNENKILVILDNIWKYLDLD----------------TIGIPFGNDHEGYNF 292 (1085)
Q Consensus 235 ~~l~~~~----~~~~--~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~----------------~~~~~~~~~~~gs~i 292 (1085)
..++... ++.. .....+.+...+ .+.+..+|+|+..+...+. .+..++.. .-|..+
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~-e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s-Rf~~~~ 175 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAM-EDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD-RFGIVQ 175 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHH-HhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH-hcCeee
Confidence 4443221 0000 011112223333 3556667777654432211 01111100 012344
Q ss_pred EecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCCCCCcc
Q 037935 293 LIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRELQTPSVVNFEGVPA 372 (1085)
Q Consensus 293 lv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 372 (1085)
-+++++.++..+++...+... ...--++....|++.|+|.|-.+..+...+ ..|.... ....+ . ...-.
T Consensus 176 ~l~~~~~~e~~~il~~~~~~~-~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~---~~~~I-~-~~~v~ 244 (328)
T PRK00080 176 RLEFYTVEELEKIVKRSARIL-GVEIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVK---GDGVI-T-KEIAD 244 (328)
T ss_pred ecCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHc---CCCCC-C-HHHHH
Confidence 559999999999999887532 122335678999999999996554444332 1221110 00000 0 00111
Q ss_pred cchhhHHHHHhcCChHHHHHHHH-hccccCCC-CCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHH-HHhHcccceec
Q 037935 373 ETYSSIELSFKYLKGEQLKKIFL-LCSLIGNS-FYLIDLLRYSMGLGLFHGVNKMEDARNKLYALVH-ELRDCCLLLEG 448 (1085)
Q Consensus 373 ~~~~~l~~sy~~L~~~~~k~cf~-~~s~fp~~-i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 448 (1085)
.....+...|..|++ ..+..+. ....|+.+ +..+.+.... | .+..+.+++ ++ .|++.+|++..
T Consensus 245 ~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~~~~~~~~a~~l---g--~~~~~~~~~-------~e~~Li~~~li~~~ 310 (328)
T PRK00080 245 KALDMLGVDELGLDE-MDRKYLRTIIEKFGGGPVGLDTLAAAL---G--EERDTIEDV-------YEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCCceeHHHHHHHH---C--CCcchHHHH-------hhHHHHHcCCcccC
Confidence 223334555677876 3444443 66667665 7777664432 1 112222322 34 67889998754
No 43
>PTZ00202 tuzin; Provisional
Probab=98.50 E-value=6.5e-06 Score=88.48 Aligned_cols=144 Identities=17% Similarity=0.228 Sum_probs=91.5
Q ss_pred CCCCccccchHHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHH
Q 037935 157 NKGYEAFESRVSTLKSIQNALTD---VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEI 233 (1085)
Q Consensus 157 ~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 233 (1085)
+.+...|+||+.++..+...|.+ ...+++.|+|++|+|||||++.+..... +. ...++. . +..++++.+
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNp-r--g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDV-R--GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECC-C--CHHHHHHHH
Confidence 44567899999999999998862 2346999999999999999999986543 21 222322 2 679999999
Q ss_pred HHHhCCCCCCchHHHHHHHHHHHHH----c-CCcEEEEEeCCCCccccccc---ccccCCCCCCcEEEe-----------
Q 037935 234 AEKLGLELSDEAEYRRASRLYERLK----N-ENKILVILDNIWKYLDLDTI---GIPFGNDHEGYNFLI----------- 294 (1085)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~l~----~-~~~~LlvlDdv~~~~~~~~~---~~~~~~~~~gs~ilv----------- 294 (1085)
+.++|.+.... ..+....+.+.+. . +++.+||+- +.+...+..+ ...+.....-|.|++
T Consensus 330 L~ALGV~p~~~-k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~ 407 (550)
T PTZ00202 330 VKALGVPNVEA-CGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIAN 407 (550)
T ss_pred HHHcCCCCccc-HHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhc
Confidence 99999743322 2222333333322 2 677777764 2222222111 122333344455555
Q ss_pred -----------cCCCHHHHHHHHHHhc
Q 037935 295 -----------GNLSEEEAWRLFKIMN 310 (1085)
Q Consensus 295 -----------~~l~~~~~~~lf~~~~ 310 (1085)
.+++.++|.+..++..
T Consensus 408 ~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 408 TLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ccCccceeEecCCCCHHHHHHHHhhcc
Confidence 8888888888877665
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.50 E-value=5.2e-09 Score=113.41 Aligned_cols=135 Identities=23% Similarity=0.389 Sum_probs=61.9
Q ss_pred eeccCcccccccC-CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccc
Q 037935 499 LLNSSIHEVSLEF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQL 577 (1085)
Q Consensus 499 l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l 577 (1085)
+..|.+..+|..+ .+..|..|+++.|. ...+|..+ +.| -|++|-+++|+++.+|..|+.+.+|..||.+.| .+
T Consensus 105 Ly~n~~r~ip~~i~~L~~lt~l~ls~Nq---lS~lp~~l-C~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei 178 (722)
T KOG0532|consen 105 LYHNCIRTIPEAICNLEALTFLDLSSNQ---LSHLPDGL-CDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EI 178 (722)
T ss_pred HHhccceecchhhhhhhHHHHhhhccch---hhcCChhh-hcC-cceeEEEecCccccCCcccccchhHHHhhhhhh-hh
Confidence 3333444443332 33444444444443 33444432 212 244555555555555555554455555555555 45
Q ss_pred cccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc-cccccceeeE
Q 037935 578 KFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL-FTKKLERFDI 653 (1085)
Q Consensus 578 ~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l 653 (1085)
..+|... +++.+|+.|+++.|.+. ..+.++..| .|..|++++|++..+|..+ .+++|+.|.+
T Consensus 179 ~slpsql-~~l~slr~l~vrRn~l~------------~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 179 QSLPSQL-GYLTSLRDLNVRRNHLE------------DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred hhchHHh-hhHHHHHHHHHhhhhhh------------hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeee
Confidence 5555443 45555555555544442 223344422 3555555555555555554 4555555444
No 45
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=7.9e-06 Score=89.72 Aligned_cols=182 Identities=22% Similarity=0.266 Sum_probs=119.1
Q ss_pred ccccchHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALT----DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEK 236 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 236 (1085)
+.+.+|+.+++++...|. .....-+.|+|..|+|||+.++.|.+..+....=..++.|++-...+..+++..|+++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 448899999999998876 2333348999999999999999999988754211127889999999999999999999
Q ss_pred hCC-CCCCchHHHHHHHHHHHHH-cCCcEEEEEeCCCCcccc--cccccccCCCC-CCcEEEe-----------------
Q 037935 237 LGL-ELSDEAEYRRASRLYERLK-NENKILVILDNIWKYLDL--DTIGIPFGNDH-EGYNFLI----------------- 294 (1085)
Q Consensus 237 l~~-~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~~~~--~~~~~~~~~~~-~gs~ilv----------------- 294 (1085)
++. +.......+....+.+.+. .++.+++|||+++....- +-+...+.... ..++|.+
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhh
Confidence 963 3334455555666666665 378999999999865322 11111121111 1344444
Q ss_pred -----------cCCCHHHHHHHHHHhcC----CCCCCCCchH-HHHHHHHHhCCchHHHHHHHH
Q 037935 295 -----------GNLSEEEAWRLFKIMNG----DDVENCKFKP-TAINVAQACGGLPIALTTVAR 342 (1085)
Q Consensus 295 -----------~~l~~~~~~~lf~~~~~----~~~~~~~~~~-~~~~i~~~~~glPlai~~~~~ 342 (1085)
.|-+.+|-..++..++. +....+..-+ ++...++..|-.-.||.++-.
T Consensus 177 ~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 177 KSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 78888888888887772 1222223333 333344444455566655443
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.47 E-value=1.9e-06 Score=90.80 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=93.6
Q ss_pred CCccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhC
Q 037935 159 GYEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLG 238 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 238 (1085)
+.++++|.++.+.++++ .+++....+||++|+||||||+.+....... | ..+|...+-.+-++++++..
T Consensus 28 GQ~HLlg~~~~lrr~v~---~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr~i~e~a- 96 (436)
T COG2256 28 GQEHLLGEGKPLRRAVE---AGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLREIIEEA- 96 (436)
T ss_pred ChHhhhCCCchHHHHHh---cCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHHHHHHHH-
Confidence 34455555555444444 6788889999999999999999999977643 4 44444443333333333322
Q ss_pred CCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe----------------------
Q 037935 239 LELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI---------------------- 294 (1085)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv---------------------- 294 (1085)
.+....+++.+|++|.|..-+ +-+.+ +|.-.+|..|+|
T Consensus 97 ---------------~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf 158 (436)
T COG2256 97 ---------------RKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVF 158 (436)
T ss_pred ---------------HHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhhee
Confidence 122224899999999997542 22223 444556766666
Q ss_pred --cCCCHHHHHHHHHHhcC-CCCC----CC-CchHHHHHHHHHhCCchH
Q 037935 295 --GNLSEEEAWRLFKIMNG-DDVE----NC-KFKPTAINVAQACGGLPI 335 (1085)
Q Consensus 295 --~~l~~~~~~~lf~~~~~-~~~~----~~-~~~~~~~~i~~~~~glPl 335 (1085)
+||+.+|-.+++.+.+- .... .. --++.-.-+++.++|=--
T Consensus 159 ~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 159 ELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred eeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 99999999999988442 1111 11 224466778888887543
No 47
>PF05729 NACHT: NACHT domain
Probab=98.45 E-value=1.1e-06 Score=86.91 Aligned_cols=87 Identities=24% Similarity=0.371 Sum_probs=56.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccC----CCEEEEEEeCCCcCHH---HHHHHHHHHhCCCCCCchHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKL----FDRVVFSEVSQTPDIK---KIQGEIAEKLGLELSDEAEYRRASRLYE 255 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 255 (1085)
+++.|+|.+|+||||+++.++........ +...+|+......... .+...+..+.......... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-----LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-----HHHH
Confidence 57899999999999999999998876543 3456777776544332 3444444444322211111 1222
Q ss_pred HHHcCCcEEEEEeCCCCcc
Q 037935 256 RLKNENKILVILDNIWKYL 274 (1085)
Q Consensus 256 ~l~~~~~~LlvlDdv~~~~ 274 (1085)
.....+++++|+|++++..
T Consensus 76 ~~~~~~~~llilDglDE~~ 94 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELE 94 (166)
T ss_pred HHHcCCceEEEEechHhcc
Confidence 3336899999999998753
No 48
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.45 E-value=5.9e-06 Score=101.29 Aligned_cols=243 Identities=17% Similarity=0.238 Sum_probs=152.1
Q ss_pred cccchHHHHHHHHHHhc---cCCceEEEEEcCCCCcHHHHHHHHHHHHhhc-cCCCEEEEEEeCCCcC---HHHHHHHHH
Q 037935 162 AFESRVSTLKSIQNALT---DVNVSIIGVYGMGGIGKTTLVKEFARQAREK-KLFDRVVFSEVSQTPD---IKKIQGEIA 234 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~---~~~~~~~i~ 234 (1085)
+++||+.+++.|...+. .+...++.+.|.+|+|||+++++|......+ +.|-.-.+-....... ..+.++++.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 36899999999999887 4566799999999999999999999987654 2221111111222222 222333333
Q ss_pred HHh-------------------CCCCC-----------------------CchHHHHHH----H-HHHHHHcCCcEEEEE
Q 037935 235 EKL-------------------GLELS-----------------------DEAEYRRAS----R-LYERLKNENKILVIL 267 (1085)
Q Consensus 235 ~~l-------------------~~~~~-----------------------~~~~~~~~~----~-~~~~l~~~~~~Llvl 267 (1085)
.++ +.... ......... . +.....+.|+.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 333 11100 000011111 1 111122577999999
Q ss_pred eCCC-Cccc----cc----ccc--cc------------------cCCCCCCcEEEecCCCHHHHHHHHHHhcCCCCCCCC
Q 037935 268 DNIW-KYLD----LD----TIG--IP------------------FGNDHEGYNFLIGNLSEEEAWRLFKIMNGDDVENCK 318 (1085)
Q Consensus 268 Ddv~-~~~~----~~----~~~--~~------------------~~~~~~gs~ilv~~l~~~~~~~lf~~~~~~~~~~~~ 318 (1085)
||+. -+.. .+ .+. .+ .......+.|-+.||+..+...+.....+.. ...
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--~~~ 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--KLL 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc--ccc
Confidence 9984 2210 00 010 00 0001233556669999999999999988642 233
Q ss_pred chHHHHHHHHHhCCchHHHHHHHHHHhcC-------CHHHHHHHHHHhcCCCCCCCCCCcccchhhHHHHHhcCChHHHH
Q 037935 319 FKPTAINVAQACGGLPIALTTVARALRNK-------SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLK 391 (1085)
Q Consensus 319 ~~~~~~~i~~~~~glPlai~~~~~~l~~~-------~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k 391 (1085)
..+....|.++..|.|+.+.-+-..+... +...|+.-...+... + .-+++.+.+..-.+.||. ..+
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~-----~-~~~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL-----A-TTDAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc-----h-hhHHHHHHHHHHHhcCCH-HHH
Confidence 46778999999999999999988888732 445555443332221 1 223366678889999997 689
Q ss_pred HHHHhccccCCCCCHHHHHHHH
Q 037935 392 KIFLLCSLIGNSFYLIDLLRYS 413 (1085)
Q Consensus 392 ~cf~~~s~fp~~i~~~~li~~w 413 (1085)
+.....|++...|+.+.|...|
T Consensus 312 ~Vl~~AA~iG~~F~l~~La~l~ 333 (849)
T COG3899 312 EVLKAAACIGNRFDLDTLAALA 333 (849)
T ss_pred HHHHHHHHhCccCCHHHHHHHH
Confidence 9999999999889988887776
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=2.6e-07 Score=73.03 Aligned_cols=61 Identities=34% Similarity=0.591 Sum_probs=51.7
Q ss_pred CccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccc
Q 037935 836 PNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSY 898 (1085)
Q Consensus 836 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 898 (1085)
|+|++|++++|.++.+++..|.. +++|++|++++|.++.+++..|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~--l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSN--LPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTT--GTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcC--CCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57888888888888888777776 78899999998888888888888888899998888863
No 50
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.42 E-value=1e-06 Score=83.04 Aligned_cols=93 Identities=28% Similarity=0.399 Sum_probs=68.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhc---cCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCC-chHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREK---KLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD-EAEYRRASRLYER 256 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~ 256 (1085)
+-+++.|+|.+|+|||++++.+.++.... ..-..++|+.++...+...+.+.++.+++..... .........+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34789999999999999999999976431 0123477999988889999999999999987765 4445556777777
Q ss_pred HHcCCcEEEEEeCCCCc
Q 037935 257 LKNENKILVILDNIWKY 273 (1085)
Q Consensus 257 l~~~~~~LlvlDdv~~~ 273 (1085)
+.+.+..+||+||++..
T Consensus 83 l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHCTEEEEEEETTHHH
T ss_pred HHhcCCeEEEEeChHhc
Confidence 77666689999998764
No 51
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.40 E-value=2.2e-06 Score=97.42 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=95.0
Q ss_pred ccccchHHHHHH---HHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKS---IQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKL 237 (1085)
Q Consensus 161 ~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 237 (1085)
+.++|++..+.. +..++.......+.++|++|+||||+|+.+++..... | +.++....-....+++++..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~ir~ii~~~ 84 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKDLREVIEEA 84 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHHHHHHHHHH
Confidence 457888877655 7777766777788999999999999999999876532 2 33322211111122222211
Q ss_pred CCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCC---------------------CCCcEEEe
Q 037935 238 GLELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGND---------------------HEGYNFLI 294 (1085)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~---------------------~~gs~ilv 294 (1085)
......+++.+|++|+++... ..+.+...+..+ .....+-+
T Consensus 85 ----------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~~ 148 (413)
T PRK13342 85 ----------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFEL 148 (413)
T ss_pred ----------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceeeEe
Confidence 111123678899999998652 222221111100 00112223
Q ss_pred cCCCHHHHHHHHHHhcCCC-CCC-CCchHHHHHHHHHhCCchHHHHHHHHH
Q 037935 295 GNLSEEEAWRLFKIMNGDD-VEN-CKFKPTAINVAQACGGLPIALTTVARA 343 (1085)
Q Consensus 295 ~~l~~~~~~~lf~~~~~~~-~~~-~~~~~~~~~i~~~~~glPlai~~~~~~ 343 (1085)
.+++.++.++++....... ... .-.++....|++.|+|-+..+..+...
T Consensus 149 ~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 149 KPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999998876321 111 233567788999999998766554443
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.40 E-value=3.4e-08 Score=107.29 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=119.7
Q ss_pred ccccceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEE
Q 037935 490 ALKKCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRML 569 (1085)
Q Consensus 490 ~~~~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L 569 (1085)
....+..++++.|.++.+|..+..--|+.|.+++|. ...+|++ ++.+..|..||.+.|.+..+|..++.|..|+.|
T Consensus 119 ~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNk---l~~lp~~-ig~~~tl~~ld~s~nei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNK---LTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhhHHHHhhhccchhhcCChhhhcCcceeEEEecCc---cccCCcc-cccchhHHHhhhhhhhhhhchHHhhhHHHHHHH
Confidence 455678889999999999988866779999999988 7888887 568999999999999999999999999999999
Q ss_pred eccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCccc
Q 037935 570 DLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLF 644 (1085)
Q Consensus 570 ~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 644 (1085)
+++.| .+..+|++. + .-.|..||++.|++. ..|-.|.+|++|++|-|.+|.+..-|..+.
T Consensus 195 ~vrRn-~l~~lp~El-~-~LpLi~lDfScNkis------------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 195 NVRRN-HLEDLPEEL-C-SLPLIRLDFSCNKIS------------YLPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred HHhhh-hhhhCCHHH-h-CCceeeeecccCcee------------ecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 99999 999999986 6 556999999999984 356778999999999999999998887773
No 53
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.39 E-value=8.3e-07 Score=91.73 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=66.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC--cCHHHHHHHH-----HHHhCCCCCCc-hHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT--PDIKKIQGEI-----AEKLGLELSDE-AEYRRAS 251 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i-----~~~l~~~~~~~-~~~~~~~ 251 (1085)
..-..++|+|++|+|||||++.++++...+ +|+.++|+.+.+. +++.++++.+ +.+++.+.... .....+.
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 345789999999999999999999988765 8999999998776 7999999999 44444321110 0111122
Q ss_pred HHHHHH-HcCCcEEEEEeCCCCc
Q 037935 252 RLYERL-KNENKILVILDNIWKY 273 (1085)
Q Consensus 252 ~~~~~l-~~~~~~LlvlDdv~~~ 273 (1085)
...+.+ ..+++.++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 222222 3589999999998653
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.5e-07 Score=99.26 Aligned_cols=153 Identities=24% Similarity=0.271 Sum_probs=100.3
Q ss_pred cccccceEEEeeccCcccccc---cCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchh--hhcc
Q 037935 489 DALKKCYAISLLNSSIHEVSL---EFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSS--IGQL 563 (1085)
Q Consensus 489 ~~~~~~r~Lsl~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~--i~~L 563 (1085)
...+++|.+++.++.....+. .-.|+++|.|++++|-...... --.+...+++|+.|+|+.|.+....++ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccccchhhh
Confidence 345678999999988876663 2378999999998875211112 234567889999999999987653222 2467
Q ss_pred ccccEEeccCcccccccc-hhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCc
Q 037935 564 TKLRMLDLTDCLQLKFIV-PNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDG 642 (1085)
Q Consensus 564 ~~L~~L~Ls~~~~l~~lp-~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 642 (1085)
.||+.|.|+.| ++..-. ..+...+++|+.|+|..|.... .......-++.|+.|+|+.|.+-.++..
T Consensus 197 ~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~-----------~~~~~~~i~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 197 SHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIIL-----------IKATSTKILQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred hhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccc-----------eecchhhhhhHHhhccccCCcccccccc
Confidence 88999999998 766211 1224677889999998885321 1112234567788888888877666543
Q ss_pred c---cccccceeeEE
Q 037935 643 L---FTKKLERFDIS 654 (1085)
Q Consensus 643 ~---~l~~L~~L~l~ 654 (1085)
. .++.|+.|+++
T Consensus 265 ~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLS 279 (505)
T ss_pred cccccccchhhhhcc
Confidence 3 45555555543
No 55
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.37 E-value=1.3e-06 Score=93.70 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=68.5
Q ss_pred HHHHhc-cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc--CHHHHHHHHHHHhCCCCCCchHHH-
Q 037935 173 IQNALT-DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP--DIKKIQGEIAEKLGLELSDEAEYR- 248 (1085)
Q Consensus 173 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~- 248 (1085)
+++.+. =+.-....|+|++|+||||||+.+|+....+ ||+.++||.+.+.. ++.++++++...+-....+.....
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~ 237 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHH
Confidence 445444 1344678899999999999999999998876 89999999999888 788888888632211111111111
Q ss_pred -----HHHHHHHHH-HcCCcEEEEEeCCCCc
Q 037935 249 -----RASRLYERL-KNENKILVILDNIWKY 273 (1085)
Q Consensus 249 -----~~~~~~~~l-~~~~~~LlvlDdv~~~ 273 (1085)
.+....+++ ..+++++|++|++...
T Consensus 238 ~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 111222222 2689999999998643
No 56
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.27 E-value=7.5e-07 Score=101.93 Aligned_cols=174 Identities=25% Similarity=0.284 Sum_probs=108.5
Q ss_pred CCCCcceeeeccCCCccccccChhhhcCCC-cceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhcccc
Q 037935 512 ECPQLEFLHIDPKITFAELNIPDNFFKGMK-KLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTR 590 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~ 590 (1085)
..+.+..|.+.++. +..+++. ...+. +|+.|++++|.+..+|..++.+++|+.|++++| .+..+|... +.+.+
T Consensus 114 ~~~~l~~L~l~~n~---i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~-~~~~~ 187 (394)
T COG4886 114 ELTNLTSLDLDNNN---ITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLL-SNLSN 187 (394)
T ss_pred cccceeEEecCCcc---cccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhh-hhhhh
Confidence 44677777777776 5666653 33343 788888888888888777888888888888888 888888753 57888
Q ss_pred CCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc-cccccceeeEEecCCCcccccccccc
Q 037935 591 LEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL-FTKKLERFDISIGDGSFDSTKIIGND 669 (1085)
Q Consensus 591 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~ 669 (1085)
|+.|++++|.+.. .+.....+..|++|.++.|.....+..+ .+.++..+.+..+.
T Consensus 188 L~~L~ls~N~i~~------------l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~------------ 243 (394)
T COG4886 188 LNNLDLSGNKISD------------LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK------------ 243 (394)
T ss_pred hhheeccCCcccc------------CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce------------
Confidence 8888888887732 2222344555777777777533333222 33333333221100
Q ss_pred cccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEecccc
Q 037935 670 WFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCK 749 (1085)
Q Consensus 670 ~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~ 749 (1085)
. ..+|..++.+++++.|++++| .+..++. ++.+.+|+.|+++++.
T Consensus 244 ------------------------------~-~~~~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 244 ------------------------------L-EDLPESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNS 288 (394)
T ss_pred ------------------------------e-eeccchhccccccceeccccc-ccccccc---ccccCccCEEeccCcc
Confidence 0 011445556677888888765 4444422 7777888888887776
Q ss_pred c
Q 037935 750 S 750 (1085)
Q Consensus 750 ~ 750 (1085)
.
T Consensus 289 ~ 289 (394)
T COG4886 289 L 289 (394)
T ss_pred c
Confidence 3
No 57
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.23 E-value=9.9e-05 Score=76.36 Aligned_cols=93 Identities=20% Similarity=0.306 Sum_probs=63.1
Q ss_pred CCccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhC
Q 037935 159 GYEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLG 238 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 238 (1085)
+.++++|.+..+ .++++.+.+..+.+||++|+||||||+.+....+... ..||..|....-.+-.+.|.++..
T Consensus 142 GQ~hlv~q~gll---rs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq 214 (554)
T KOG2028|consen 142 GQSHLVGQDGLL---RSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ 214 (554)
T ss_pred chhhhcCcchHH---HHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH
Confidence 334445544433 3444467889999999999999999999999876543 567888776655555566655432
Q ss_pred CCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 239 LELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
. . ....++|.+|.+|+|..-
T Consensus 215 ~-------------~--~~l~krkTilFiDEiHRF 234 (554)
T KOG2028|consen 215 N-------------E--KSLTKRKTILFIDEIHRF 234 (554)
T ss_pred H-------------H--HhhhcceeEEEeHHhhhh
Confidence 1 1 111378899999998643
No 58
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.23 E-value=4.4e-06 Score=84.23 Aligned_cols=48 Identities=21% Similarity=0.359 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHHhc---cCCceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 162 AFESRVSTLKSIQNALT---DVNVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
.|+||+++++++.+.+. ....+.+.|+|.+|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999993 4556899999999999999999999988766
No 59
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=0.00011 Score=79.17 Aligned_cols=183 Identities=12% Similarity=0.133 Sum_probs=114.5
Q ss_pred CCccccchHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHH
Q 037935 159 GYEAFESRVSTLKSIQNALT----DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
.+..+.||+.++..+.+++. ....+.+.|.|.+|.|||.+...|+.+......=..++.+++..-....+++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 34568999999999998876 35668899999999999999999999876432222456677666567788888888
Q ss_pred HHh-CCCCCCchHHHHHHHHHHHHHcCC-cEEEEEeCCCCccc--ccccccccCC-CCCCcEEEe---------------
Q 037935 235 EKL-GLELSDEAEYRRASRLYERLKNEN-KILVILDNIWKYLD--LDTIGIPFGN-DHEGYNFLI--------------- 294 (1085)
Q Consensus 235 ~~l-~~~~~~~~~~~~~~~~~~~l~~~~-~~LlvlDdv~~~~~--~~~~~~~~~~-~~~gs~ilv--------------- 294 (1085)
..+ ..........+....+.+...+.+ .+|+|+|.++.... -.-+...|-+ ...++++++
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 777 222222222333444555555444 89999999876421 1111111111 123444333
Q ss_pred ---------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCC----chHHHHHHH
Q 037935 295 ---------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGG----LPIALTTVA 341 (1085)
Q Consensus 295 ---------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g----lPlai~~~~ 341 (1085)
+|.+.++-.+++..+..............+.+|+|+.| +--|+-+.-
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 89999999999998884333333333445555555544 444444433
No 60
>PRK04195 replication factor C large subunit; Provisional
Probab=98.16 E-value=0.00015 Score=84.30 Aligned_cols=234 Identities=13% Similarity=0.076 Sum_probs=124.4
Q ss_pred CccccchHHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHH
Q 037935 160 YEAFESRVSTLKSIQNALTD----VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAE 235 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 235 (1085)
-..++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.++++.. |+. +-++.+...+... ...++.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~~~~-i~~~i~ 86 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRTADV-IERVAG 86 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEcccccccHHH-HHHHHH
Confidence 35689999999999998862 1267899999999999999999999864 333 3344444333222 222222
Q ss_pred HhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCccc------ccccccccCC--------------------CCCC
Q 037935 236 KLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYLD------LDTIGIPFGN--------------------DHEG 289 (1085)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~------~~~~~~~~~~--------------------~~~g 289 (1085)
...... .+...++-+||+|+++.... +..+...+.. ...+
T Consensus 87 ~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~ 152 (482)
T PRK04195 87 EAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNAC 152 (482)
T ss_pred HhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhccc
Confidence 211100 01012566788888765421 1222111110 0111
Q ss_pred cEEEecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHHHHh-cC---CHHHHHHHHHHhcCCCCC
Q 037935 290 YNFLIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVARALR-NK---SLHEWKNALRELQTPSVV 365 (1085)
Q Consensus 290 s~ilv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~-~~---~~~~w~~~~~~l~~~~~~ 365 (1085)
..|-+.+++.++....+...+.... ..--.+....|++.++|-.-.+......+. +. +......+..
T Consensus 153 ~~I~f~~~~~~~i~~~L~~i~~~eg-i~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-------- 223 (482)
T PRK04195 153 LMIEFKRLSTRSIVPVLKRICRKEG-IECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-------- 223 (482)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--------
Confidence 2233378888888888777663111 112256778899999886655543333333 22 3333332221
Q ss_pred CCCCCcccchhhHHHHHhcCChHHHHHHHHhccccCCCCCHHHHHHHHhhcCCCCCCchHHHHHH
Q 037935 366 NFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFYLIDLLRYSMGLGLFHGVNKMEDARN 430 (1085)
Q Consensus 366 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~i~~~~li~~w~~~g~~~~~~~~~~~~~ 430 (1085)
.+....++.++..-+..=....+...+. --+++.+ .+-.|+.+.+.......+++..
T Consensus 224 --~d~~~~if~~l~~i~~~k~~~~a~~~~~-----~~~~~~~-~i~~~l~en~~~~~~~~~~~~~ 280 (482)
T PRK04195 224 --RDREESIFDALDAVFKARNADQALEASY-----DVDEDPD-DLIEWIDENIPKEYDDPEDIAR 280 (482)
T ss_pred --CCCCCCHHHHHHHHHCCCCHHHHHHHHH-----cccCCHH-HHHHHHHhccccccCCHHHHHH
Confidence 1123455666665554222222332221 1234554 4567999998875444444443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.15 E-value=5.2e-06 Score=90.23 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=16.0
Q ss_pred CCceEEEecCCcccccchhHHhhccccceEEeeccc
Q 037935 862 GSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCS 897 (1085)
Q Consensus 862 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 897 (1085)
..++.|+++++.++.+| ...++|+.|.+++|.
T Consensus 52 ~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~ 83 (426)
T PRK15386 52 RASGRLYIKDCDIESLP----VLPNELTEITIENCN 83 (426)
T ss_pred cCCCEEEeCCCCCcccC----CCCCCCcEEEccCCC
Confidence 44555555555555554 123345555555554
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=4.5e-06 Score=90.65 Aligned_cols=154 Identities=20% Similarity=0.214 Sum_probs=101.1
Q ss_pred HhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeecccccccc
Q 037935 882 LERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSL 961 (1085)
Q Consensus 882 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~ 961 (1085)
+..+.+++.|++++|.++.++. + .++|+.|.+++|++|+.++. ..+++|+.|++++|+++..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---L-------P~sLtsL~Lsnc~nLtsLP~-------~LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---L-------PNELTEITIENCNNLTTLPG-------SIPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---C-------CCCCcEEEccCCCCcccCCc-------hhhhhhhheEccCccccccc
Confidence 3457999999999999887752 1 23699999999999988875 24679999999999888665
Q ss_pred CCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccccccccccccccceeecccccccccccc
Q 037935 962 LPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSKLSALSLFDLD 1041 (1085)
Q Consensus 962 ~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 1041 (1085)
+ .+|+.|++.+ +.+..+ ..-.++|+.|.+.++........ + ...+++|+.|.+.+|.
T Consensus 111 P-------~sLe~L~L~~-n~~~~L-----~~LPssLk~L~I~~~n~~~~~~l---------p-~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 111 P-------ESVRSLEIKG-SATDSI-----KNVPNGLTSLSINSYNPENQARI---------D-NLISPSLKTLSLTGCS 167 (426)
T ss_pred c-------cccceEEeCC-CCCccc-----ccCcchHhheecccccccccccc---------c-cccCCcccEEEecCCC
Confidence 3 2588888853 433322 11224578888765331111100 1 1135899999999998
Q ss_pred ccceecCCCccccCCCcCceeeccCCCc-ccccCCCcCCc
Q 037935 1042 SLTSFSSGNYAFKLPSLQDLWVIGCPKM-KLFTKGELSTP 1080 (1085)
Q Consensus 1042 ~L~~l~~~~~~~~l~~L~~L~i~~C~~l-~~lp~~~~~~~ 1080 (1085)
.+. +|.+ ++ .+|+.|++..+... -.++.+.+|.+
T Consensus 168 ~i~-LP~~-LP---~SLk~L~ls~n~~~sLeI~~~sLP~n 202 (426)
T PRK15386 168 NII-LPEK-LP---ESLQSITLHIEQKTTWNISFEGFPDG 202 (426)
T ss_pred ccc-Cccc-cc---ccCcEEEecccccccccCcccccccc
Confidence 663 4432 22 58999999876422 23444455443
No 63
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.09 E-value=2.9e-06 Score=97.12 Aligned_cols=174 Identities=22% Similarity=0.323 Sum_probs=126.4
Q ss_pred hcCCCcceEEEecCCcccCCchhhhccc-cccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccc
Q 037935 537 FKGMKKLRVVDLTRVRLFSLPSSIGQLT-KLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNA 615 (1085)
Q Consensus 537 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~-~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~ 615 (1085)
...++.++.|++.++.++.+|...+.+. +|+.|++++| .+..+|.. ++.+++|+.|++++|.+..
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~l~~------------ 177 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFNDLSD------------ 177 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhh-hhccccccccccCCchhhh------------
Confidence 4456889999999999999999888885 9999999999 99999755 4999999999999999842
Q ss_pred cHHHhhcCCCCcEEEEEeccCCCCCCcc-cccccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccc
Q 037935 616 SLDELMHLQRLTTLEIDVEDDSILPDGL-FTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAIN 694 (1085)
Q Consensus 616 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~ 694 (1085)
.+.....+++|+.|++++|.+..+|..+ ....|+.+.+..+.
T Consensus 178 l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~------------------------------------- 220 (394)
T COG4886 178 LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS------------------------------------- 220 (394)
T ss_pred hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-------------------------------------
Confidence 2333348889999999999999999875 44447766664321
Q ss_pred cccccccCCCCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccE
Q 037935 695 VDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTT 774 (1085)
Q Consensus 695 L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~ 774 (1085)
....+..+..+.++..+.+.++. +..+ +..++.+++|+.|++++|. +..+.. ...+.+++.
T Consensus 221 ------~~~~~~~~~~~~~l~~l~l~~n~-~~~~--~~~~~~l~~l~~L~~s~n~-i~~i~~---------~~~~~~l~~ 281 (394)
T COG4886 221 ------IIELLSSLSNLKNLSGLELSNNK-LEDL--PESIGNLSNLETLDLSNNQ-ISSISS---------LGSLTNLRE 281 (394)
T ss_pred ------ceecchhhhhcccccccccCCce-eeec--cchhccccccceecccccc-cccccc---------ccccCccCE
Confidence 01233345566677777765543 3332 2347788889999988876 333322 224667777
Q ss_pred EecCCC
Q 037935 775 LKLDGL 780 (1085)
Q Consensus 775 L~l~~~ 780 (1085)
|++++.
T Consensus 282 L~~s~n 287 (394)
T COG4886 282 LDLSGN 287 (394)
T ss_pred EeccCc
Confidence 777763
No 64
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.08 E-value=1.6e-05 Score=85.90 Aligned_cols=93 Identities=14% Similarity=0.160 Sum_probs=65.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC--cCHHHHHHHHHHHhCCCCCCchH---H---HHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT--PDIKKIQGEIAEKLGLELSDEAE---Y---RRAS 251 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~---~---~~~~ 251 (1085)
+.-..++|+|++|+|||||++.+++....+ +|+..+||.+.+. .++.++++.+...+-....+.+. . ..+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 345789999999999999999999988765 8999999999866 78999999994433221111111 1 1122
Q ss_pred HHHHHH-HcCCcEEEEEeCCCCc
Q 037935 252 RLYERL-KNENKILVILDNIWKY 273 (1085)
Q Consensus 252 ~~~~~l-~~~~~~LlvlDdv~~~ 273 (1085)
...+++ ..+++.+|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 222222 2689999999998643
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=6e-07 Score=89.82 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=43.2
Q ss_pred ccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCC
Q 037935 710 CFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGL 780 (1085)
Q Consensus 710 ~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~ 780 (1085)
.+++|.+|+|++|..++.. -...+-+++.|++|.++.|+.+.--. .......|+|.+|++-+|
T Consensus 311 rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~~-------~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPET-------LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChHH-------eeeeccCcceEEEEeccc
Confidence 5678999999999888763 34567788999999999998653110 011224677777777664
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=3.7e-06 Score=60.37 Aligned_cols=41 Identities=29% Similarity=0.528 Sum_probs=30.0
Q ss_pred CcceEEEecCCcccCCchhhhccccccEEeccCcccccccch
Q 037935 541 KKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVP 582 (1085)
Q Consensus 541 ~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~ 582 (1085)
++|++|++++|+|+.+|..+++|++|++|++++| .++.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4678888888888888777888888888888888 7776654
No 67
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=4.5e-05 Score=90.51 Aligned_cols=162 Identities=16% Similarity=0.207 Sum_probs=96.5
Q ss_pred ccccchHHHHHHHHHHhccCCceE-EEEEcCCCCcHHHHHHHHHHHHhhccC-------------------CCEEEEEEe
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSI-IGVYGMGGIGKTTLVKEFARQAREKKL-------------------FDRVVFSEV 220 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~ 220 (1085)
+.++|.+..++.|.+++..+++.. +.++|+.|+||||+|+.+++....... |.-++++..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 568999999999999888777765 479999999999999999987654211 111222322
Q ss_pred CCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc--ccccccccccCCCCCCcEEEe----
Q 037935 221 SQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY--LDLDTIGIPFGNDHEGYNFLI---- 294 (1085)
Q Consensus 221 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ilv---- 294 (1085)
.....+..+ ++|.+.+. ..-..+++-++|+|++... ..++.+...+-.-....++|+
T Consensus 96 as~~kVDdI-ReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 96 ASRTKVDDT-RELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred ccccCHHHH-HHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 211122221 22222221 0111367778999998765 233333222211111122222
Q ss_pred -----------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHH
Q 037935 295 -----------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTV 340 (1085)
Q Consensus 295 -----------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 340 (1085)
.+++.++..+.+.+.+... ....-.+....|++.++|.|--+..+
T Consensus 159 ~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-gI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 159 PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-QLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999988876321 12223567788999999988644443
No 68
>PLN03150 hypothetical protein; Provisional
Probab=98.05 E-value=1e-05 Score=96.89 Aligned_cols=81 Identities=25% Similarity=0.409 Sum_probs=38.4
Q ss_pred cceeeeccCCCccccccChhhhcCCCcceEEEecCCccc-CCchhhhccccccEEeccCccccc-ccchhhhhccccCCE
Q 037935 516 LEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLF-SLPSSIGQLTKLRMLDLTDCLQLK-FIVPNILSSFTRLEE 593 (1085)
Q Consensus 516 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~Ls~~~~l~-~lp~~~~~~L~~L~~ 593 (1085)
++.|++.++.. ...+|.. +..+++|++|+|++|.+. .+|..++.+++|++|+|++| .+. .+|.. +++|++|++
T Consensus 420 v~~L~L~~n~L--~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGL--RGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPES-LGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCc--cccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchH-HhcCCCCCE
Confidence 44444444432 2233332 444555555555555554 34555555555555555555 443 23333 355555555
Q ss_pred EeccCCCc
Q 037935 594 LYMGSCSI 601 (1085)
Q Consensus 594 L~L~~~~~ 601 (1085)
|+|++|.+
T Consensus 495 L~Ls~N~l 502 (623)
T PLN03150 495 LNLNGNSL 502 (623)
T ss_pred EECcCCcc
Confidence 55555544
No 69
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.05 E-value=9.1e-05 Score=73.24 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=36.1
Q ss_pred CCccccchHHHHHHHHHHhc-----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 159 GYEAFESRVSTLKSIQNALT-----DVNVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
.-++|+|.+..++.+.-++. .+.+..+-+||++|+||||||..+.++....
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC
Confidence 45679999998887654443 3457889999999999999999999998754
No 70
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.04 E-value=3.1e-05 Score=74.78 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=62.1
Q ss_pred cchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCC
Q 037935 164 ESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD 243 (1085)
Q Consensus 164 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 243 (1085)
+||+..+..+...+.....+.+.|+|.+|+|||++++.+++..... -..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 4788889999998876667889999999999999999999987522 2346677665543322222111100
Q ss_pred chHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 244 EAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
............++.++|+||++..
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhh
Confidence 0001111111367889999999854
No 71
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.0001 Score=80.67 Aligned_cols=156 Identities=18% Similarity=0.231 Sum_probs=97.5
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHh----hccCCCEEEEEEe-CCCcCHHHHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAR----EKKLFDRVVFSEV-SQTPDIKKIQGEIA 234 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~----~~~~f~~~~wv~~-~~~~~~~~~~~~i~ 234 (1085)
.+++|.+...+.+..++..+.+ ..+.++|+.|+||||+|+.+++..- ...|+|...|... +....+.++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 3578988889999999876655 4668999999999999999998653 2356777666553 333444443 3333
Q ss_pred HHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC--cccccccccccCCCCCCcEEEe------------------
Q 037935 235 EKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK--YLDLDTIGIPFGNDHEGYNFLI------------------ 294 (1085)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~--~~~~~~~~~~~~~~~~gs~ilv------------------ 294 (1085)
+.+..... .+++-++|+|+++. ...++.+...+.....++.+++
T Consensus 83 ~~~~~~p~----------------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKPY----------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCcc----------------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 33322110 13444555555433 3445555555554444444444
Q ss_pred ---cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHH
Q 037935 295 ---GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALT 338 (1085)
Q Consensus 295 ---~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 338 (1085)
.++++++....+...... ...+.++.++..++|.|.-+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 778888887777665421 113446788899999887554
No 72
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00019 Score=80.06 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=90.4
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhccC-------------------CCEEEEEEe
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAREKKL-------------------FDRVVFSEV 220 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~ 220 (1085)
++++|.+..++.+...+..+++ ..+.++|+.|+||||+|+.+.+....... +....++..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~ 95 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDA 95 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecc
Confidence 4688999999999988876655 45689999999999999999987643211 111222222
Q ss_pred CCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe----
Q 037935 221 SQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI---- 294 (1085)
Q Consensus 221 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv---- 294 (1085)
+....+.+ .+++.+.+.... ..+++-++|+|+++... .++.+...+.......++++
T Consensus 96 ~~~~~v~~-ir~i~~~~~~~p----------------~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 96 ASRTKVEE-MREILDNIYYSP----------------SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred cccCCHHH-HHHHHHHHhcCc----------------ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 11111111 122222211000 02455678888887653 24433333322222223332
Q ss_pred -----------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHH
Q 037935 295 -----------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIAL 337 (1085)
Q Consensus 295 -----------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 337 (1085)
.|++.++..+.+...+... ...--++.+..|++.++|.|-.+
T Consensus 159 ~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~-g~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 159 VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKE-SIDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHH
Confidence 8888888888777765211 11122456778888898877543
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=98.03 E-value=5.9e-05 Score=82.80 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=87.2
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCC-EEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFD-RVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
+.++|.+..++.+..++..++.+.+.++|++|+||||+|+.+++..... .|. .++-++.+...... ..+++++.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~~~~~ 90 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIKMFAQ 90 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHHHHHh
Confidence 4578988888888888777777778899999999999999999986432 132 12223333332322 22222222110
Q ss_pred CCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe---------------------cC
Q 037935 240 ELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI---------------------GN 296 (1085)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv---------------------~~ 296 (1085)
... ....++.-++|+|+++... ..+.+...+......+++++ .+
T Consensus 91 ~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~ 157 (319)
T PLN03025 91 KKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSR 157 (319)
T ss_pred ccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCC
Confidence 000 0001445688888887652 11222211111112222222 77
Q ss_pred CCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchH
Q 037935 297 LSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPI 335 (1085)
Q Consensus 297 l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 335 (1085)
+++++..+.+...+.... -.--.+....|++.++|-.-
T Consensus 158 l~~~~l~~~L~~i~~~eg-i~i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 158 LSDQEILGRLMKVVEAEK-VPYVPEGLEAIIFTADGDMR 195 (319)
T ss_pred CCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHH
Confidence 777777777776652111 11124566777777777543
No 74
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.99 E-value=9.7e-05 Score=82.57 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=41.9
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
+.++|++..++.+..++..+..+.+.++|+.|+||||+|+.+.+....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 568899999999999888777678889999999999999999987653
No 75
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.97 E-value=1.6e-06 Score=89.30 Aligned_cols=89 Identities=27% Similarity=0.342 Sum_probs=52.4
Q ss_pred CCCCcceeeeccCCCc-cccccChhhhcCCCcceEEEecCCc----ccCCch-------hhhccccccEEeccCcccccc
Q 037935 512 ECPQLEFLHIDPKITF-AELNIPDNFFKGMKKLRVVDLTRVR----LFSLPS-------SIGQLTKLRMLDLTDCLQLKF 579 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~-~~~~l~~~~~~~l~~Lr~L~Ls~~~----i~~lp~-------~i~~L~~L~~L~Ls~~~~l~~ 579 (1085)
....+..+++++|..- .-.......+.+.+.||..++++.- ..++|+ .+-.+++|++||||+| -+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-ccCc
Confidence 4567777888877520 0011222345666778888877641 233444 3345567888888887 4431
Q ss_pred -cc---hhhhhccccCCEEeccCCCc
Q 037935 580 -IV---PNILSSFTRLEELYMGSCSI 601 (1085)
Q Consensus 580 -lp---~~~~~~L~~L~~L~L~~~~~ 601 (1085)
-+ ...+.+++.|++|+|.+|.+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCC
Confidence 11 12356777888888888876
No 76
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.97 E-value=3.2e-05 Score=85.28 Aligned_cols=108 Identities=20% Similarity=0.204 Sum_probs=74.4
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE 240 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 240 (1085)
.++++.+...+.+...+.. .+.|.++|++|+|||++|+.+++.......|+.+.||.+++.++..++.....-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 3467788889999998864 3678889999999999999999988766678899999999998877776533110 111
Q ss_pred CCCchHHHHHHHHHHHHH--cCCcEEEEEeCCCCc
Q 037935 241 LSDEAEYRRASRLYERLK--NENKILVILDNIWKY 273 (1085)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~--~~~~~LlvlDdv~~~ 273 (1085)
.. .......++.+... ..+++++|+|++...
T Consensus 252 y~--~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FR--RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eE--ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00 00011222222222 257899999998654
No 77
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.96 E-value=0.0002 Score=79.29 Aligned_cols=159 Identities=13% Similarity=0.102 Sum_probs=89.0
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe--CCCcCHHHHHHHHHHHhC
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV--SQTPDIKKIQGEIAEKLG 238 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~ 238 (1085)
++++|++..++.+..++..+..+.+.++|..|+||||+|+.+.+...... +. ..++.+ +.......+ ++.+.++.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~-~~~i~~~~~~~~~~~~~-~~~i~~~~ 93 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WR-ENFLELNASDERGIDVI-RNKIKEFA 93 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cc-cceEEeccccccchHHH-HHHHHHHH
Confidence 45889999999999998876677789999999999999999998865332 21 122333 222222211 11111111
Q ss_pred CCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCC---------------------CcEEEec
Q 037935 239 LELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHE---------------------GYNFLIG 295 (1085)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~---------------------gs~ilv~ 295 (1085)
.... .....+-++++|+++... ..+.+...+..... +..+-+.
T Consensus 94 ~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 94 RTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred hcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 0000 001234466666665431 11122111111111 2223337
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHH
Q 037935 296 NLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIAL 337 (1085)
Q Consensus 296 ~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 337 (1085)
+++.++....+...+.... ..-.++....+++.++|-+.-+
T Consensus 160 ~l~~~ei~~~l~~~~~~~~-~~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEG-IEITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 8888888888887763211 1123567788899999877554
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00015 Score=83.47 Aligned_cols=173 Identities=14% Similarity=0.063 Sum_probs=93.7
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 161 EAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
+.++|.+...+.+..++..+... .+.++|++|+||||+|+.+++.....+.+...+|.|.+... +..........+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~ 92 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEIDA 92 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEecc
Confidence 45789999888888888766654 55899999999999999999987643323222232221100 00000000000000
Q ss_pred CCCCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEE--------------------
Q 037935 240 ELSDEAEYRRASRLYERLK----NENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFL-------------------- 293 (1085)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~il-------------------- 293 (1085)
. .....+.+..+.+.+. .+++-++|+|+++... .++.+...+........+|
T Consensus 93 ~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~ 170 (504)
T PRK14963 93 A--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHF 170 (504)
T ss_pred c--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEE
Confidence 0 0000111122222211 2556688888887542 2333333322211222222
Q ss_pred -ecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHH
Q 037935 294 -IGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIAL 337 (1085)
Q Consensus 294 -v~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 337 (1085)
+.+++.++..+.+...+.... ...-.+....|++.++|.+--+
T Consensus 171 ~f~~ls~~el~~~L~~i~~~eg-i~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 171 RFRRLTEEEIAGKLRRLLEAEG-REAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 289999999999988763211 1123567788999999987544
No 79
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00025 Score=80.22 Aligned_cols=102 Identities=22% Similarity=0.303 Sum_probs=69.3
Q ss_pred CccccchHHHHHHHHHHhc------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHH
Q 037935 160 YEAFESRVSTLKSIQNALT------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEI 233 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 233 (1085)
.++-+|.++.+++|++++. +-+-++++.+|++|||||.+|+.++.....+ | +-++|..-.+..+|-..-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccc
Confidence 3456899999999999986 3356899999999999999999999988754 4 335666666665554333
Q ss_pred HHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 234 AEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
-..+|. ....+.+..+.. +..+=|+++|.|+..
T Consensus 485 RTYVGA------MPGkiIq~LK~v-~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 485 RTYVGA------MPGKIIQCLKKV-KTENPLILIDEVDKL 517 (906)
T ss_pred eeeecc------CChHHHHHHHhh-CCCCceEEeehhhhh
Confidence 222221 112233333344 366778999998643
No 80
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00012 Score=84.13 Aligned_cols=159 Identities=12% Similarity=0.167 Sum_probs=90.8
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhcc-------------------CCCEEEEEEe
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAREKK-------------------LFDRVVFSEV 220 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 220 (1085)
+.++|.+...+.+..++..+++ ..+.++|+.|+||||+|+.+.+...... .|.-++.++.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDA 94 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDA 94 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecc
Confidence 5689999999999999886654 5678999999999999999988764321 1111222222
Q ss_pred CCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe----
Q 037935 221 SQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI---- 294 (1085)
Q Consensus 221 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv---- 294 (1085)
+....+.++ ++++..+.. .-..+++-++|+|++.... ..+.+...+.....+.++|+
T Consensus 95 As~~~VddI-Reli~~~~y----------------~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 95 ASRTKVEDT-RELLDNVPY----------------APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred cccCCHHHH-HHHHHHHhh----------------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 222222111 112211100 0012566788899987652 33333333322222233333
Q ss_pred -----------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHH
Q 037935 295 -----------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIAL 337 (1085)
Q Consensus 295 -----------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 337 (1085)
.+++.++..+.+...+... ....-.+....|++.++|-+..+
T Consensus 158 ~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE-gI~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 158 PQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKE-QIAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred hHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHH
Confidence 7788888777777665311 11222456677888888866443
No 81
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.91 E-value=0.003 Score=75.21 Aligned_cols=61 Identities=23% Similarity=0.270 Sum_probs=46.1
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCC---EEEEEEeC
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFD---RVVFSEVS 221 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~---~~~wv~~~ 221 (1085)
+.++|++..++.+...+.......+.|+|++|+||||+|+.+++..+...++. ..-|+.+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 45789999998888877656667899999999999999999998775433331 23455553
No 82
>PF13173 AAA_14: AAA domain
Probab=97.88 E-value=3.1e-05 Score=72.14 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=60.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 261 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 261 (1085)
-+++.|.|+.|+||||++++++++.. ....++++++...........+ ..+.+.+.. ..+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~-~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELI-KPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhh-ccC
Confidence 47899999999999999999998775 1345677776553221110000 112222222 247
Q ss_pred cEEEEEeCCCCcccccccccccCCCCCCcEEEe
Q 037935 262 KILVILDNIWKYLDLDTIGIPFGNDHEGYNFLI 294 (1085)
Q Consensus 262 ~~LlvlDdv~~~~~~~~~~~~~~~~~~gs~ilv 294 (1085)
+.++++|+|....+|......+.+.....+|++
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~ 94 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIIL 94 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEE
Confidence 888999999998888877666655555556665
No 83
>PLN03150 hypothetical protein; Provisional
Probab=97.88 E-value=2.9e-05 Score=93.05 Aligned_cols=100 Identities=24% Similarity=0.332 Sum_probs=81.9
Q ss_pred cceEEEecCCcccC-CchhhhccccccEEeccCccccc-ccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHH
Q 037935 542 KLRVVDLTRVRLFS-LPSSIGQLTKLRMLDLTDCLQLK-FIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDE 619 (1085)
Q Consensus 542 ~Lr~L~Ls~~~i~~-lp~~i~~L~~L~~L~Ls~~~~l~-~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 619 (1085)
.++.|+|++|.+.. +|..+++|++|++|+|++| .+. .+|.. ++++++|+.|+|++|.+ .+..+..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N~l-----------sg~iP~~ 485 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYNSF-----------NGSIPES 485 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCCCC-----------CCCCchH
Confidence 48899999999975 8999999999999999999 776 67766 59999999999999998 4567788
Q ss_pred hhcCCCCcEEEEEeccCC-CCCCcc--cccccceeeEE
Q 037935 620 LMHLQRLTTLEIDVEDDS-ILPDGL--FTKKLERFDIS 654 (1085)
Q Consensus 620 l~~L~~L~~L~l~~~~~~-~~~~~~--~l~~L~~L~l~ 654 (1085)
++++++|+.|++++|.+. .+|..+ ...++..+++.
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 999999999999999876 456554 12344455543
No 84
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.0002 Score=82.30 Aligned_cols=157 Identities=13% Similarity=0.167 Sum_probs=96.8
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhcc------------------------CCCEE
Q 037935 161 EAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAREKK------------------------LFDRV 215 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~------------------------~f~~~ 215 (1085)
++++|.+..++.|.+++..+++. .+.++|..|+||||+|+.+.+..-... .|.-+
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDv 95 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDY 95 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcc
Confidence 46899999999999999876664 558899999999999999998765311 01112
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--ccccccccccCCCCCC
Q 037935 216 VFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKY--LDLDTIGIPFGNDHEG 289 (1085)
Q Consensus 216 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~~~~~~~~~~~g 289 (1085)
++++......+ +.+..+.+.+. .++.-++|+|+++.. ..++.+...+-.-...
T Consensus 96 iEIdAas~~gV---------------------DdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~ 154 (700)
T PRK12323 96 IEMDAASNRGV---------------------DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH 154 (700)
T ss_pred eEecccccCCH---------------------HHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCC
Confidence 22222211111 12222222221 366779999999876 3455554444332334
Q ss_pred cEEEe---------------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHH
Q 037935 290 YNFLI---------------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTT 339 (1085)
Q Consensus 290 s~ilv---------------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 339 (1085)
.++|+ .+++.++..+.+.+.+.... .....+..+.|++.++|.|.-...
T Consensus 155 v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 155 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-IAHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred ceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 44443 78888888888877663211 112245567889999998865443
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00021 Score=82.40 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=91.8
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhcc-------------------CCCEEEEEEe
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAREKK-------------------LFDRVVFSEV 220 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 220 (1085)
+.++|.+..++.+..++..+++ ..+.++|+.|+||||+|+.+++...... .|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4578999999999988876555 4577899999999999999998654311 1222333333
Q ss_pred CCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe----
Q 037935 221 SQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI---- 294 (1085)
Q Consensus 221 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv---- 294 (1085)
.....+.++ +++++.+. ..-..+++-++|+|+++... .++.+...+-......++|+
T Consensus 96 as~~gvd~i-r~ii~~~~----------------~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd 158 (546)
T PRK14957 96 ASRTGVEET-KEILDNIQ----------------YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTD 158 (546)
T ss_pred ccccCHHHH-HHHHHHHH----------------hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECC
Confidence 222222221 22222111 00113667789999987542 34444333332222232322
Q ss_pred -----------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCch-HHHHHHH
Q 037935 295 -----------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLP-IALTTVA 341 (1085)
Q Consensus 295 -----------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~ 341 (1085)
.+++.++..+.+...+... ....-+.....|++.++|-+ -|+..+-
T Consensus 159 ~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~e-gi~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 159 YHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKE-NINSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred hhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7788877776766654211 11223455677888888854 3444443
No 86
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00022 Score=83.02 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=95.2
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhccC-------------------CCEEEEEEe
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAREKKL-------------------FDRVVFSEV 220 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~ 220 (1085)
++++|.+..++.|..++..+++ ..+.++|..|+||||+|+.+.+....... |.-+++++.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDA 95 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDA 95 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence 5689999999999999886665 45579999999999999999887643211 112333333
Q ss_pred CCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe
Q 037935 221 SQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI 294 (1085)
Q Consensus 221 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv 294 (1085)
+....+.+ +..+.+... .++.-++|+|+++... .++.+...+-.-....++|+
T Consensus 96 as~rgVDd---------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FIL 154 (830)
T PRK07003 96 ASNRGVDE---------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFIL 154 (830)
T ss_pred cccccHHH---------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 22222211 222222211 2455688899998763 35544433322222333333
Q ss_pred ---------------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCch-HHHHH
Q 037935 295 ---------------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLP-IALTT 339 (1085)
Q Consensus 295 ---------------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~ 339 (1085)
.+++.++..+.+...+.... ..-..+..+.|++.++|.. -|+..
T Consensus 155 aTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 155 ATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 88899999888888764211 1223566788899998855 44444
No 87
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00042 Score=79.16 Aligned_cols=179 Identities=18% Similarity=0.192 Sum_probs=98.7
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhccC-------------------CCEEEEEEe
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAREKKL-------------------FDRVVFSEV 220 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~ 220 (1085)
+.++|.+...+.+...+..+.+ ..+.++|++|+||||+|+.+.+....... +..+..++.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 5689999888888888776666 45789999999999999999887643210 111233333
Q ss_pred CCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc--ccccccccccCCC------------
Q 037935 221 SQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY--LDLDTIGIPFGND------------ 286 (1085)
Q Consensus 221 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~~~~~~~~~------------ 286 (1085)
+....+..+ +++.+..... .. .+++-++|+|+++.. ...+.+...+...
T Consensus 94 a~~~gid~i-R~i~~~~~~~---------------p~-~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn 156 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGYR---------------PM-EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTN 156 (472)
T ss_pred cccCCHHHH-HHHHHHHhhC---------------hh-cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 322233222 2232222110 01 145556777776543 1122221111110
Q ss_pred ---------CCCcEEEecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhC-CchHHHHHHHHHHh--c--CCHHHH
Q 037935 287 ---------HEGYNFLIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACG-GLPIALTTVARALR--N--KSLHEW 352 (1085)
Q Consensus 287 ---------~~gs~ilv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~-glPlai~~~~~~l~--~--~~~~~w 352 (1085)
.+...+-+.+++.++....+...+... ...--++....|++.++ +++.|+..+..+.. + .+.+..
T Consensus 157 ~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~e-gi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V 235 (472)
T PRK14962 157 LEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAE-GIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETV 235 (472)
T ss_pred hHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 111222238899999888888776311 11223566788888775 45677766655433 1 255555
Q ss_pred HHHHH
Q 037935 353 KNALR 357 (1085)
Q Consensus 353 ~~~~~ 357 (1085)
+.++.
T Consensus 236 ~~~l~ 240 (472)
T PRK14962 236 HEALG 240 (472)
T ss_pred HHHHc
Confidence 55443
No 88
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.83 E-value=0.00012 Score=76.85 Aligned_cols=113 Identities=26% Similarity=0.334 Sum_probs=81.4
Q ss_pred ccccchHHHHHHHHHHhccCC---ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVN---VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKL 237 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 237 (1085)
..|.+|+.+++.+...+.+.. ...|.|+|-+|.|||.+.+++.+.... ..+|+++-.-++.+.++..|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 457899999999999887432 245689999999999999999998743 268999999999999999999999
Q ss_pred CCCCCCc--hH--HHHHHHHHHHHH-------cCCcEEEEEeCCCCcccccc
Q 037935 238 GLELSDE--AE--YRRASRLYERLK-------NENKILVILDNIWKYLDLDT 278 (1085)
Q Consensus 238 ~~~~~~~--~~--~~~~~~~~~~l~-------~~~~~LlvlDdv~~~~~~~~ 278 (1085)
+....+. .+ .+........+. .++.++||||+++...+.+.
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a 132 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDA 132 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccch
Confidence 6322211 11 122222222222 25689999999987654443
No 89
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00028 Score=81.30 Aligned_cols=48 Identities=25% Similarity=0.283 Sum_probs=40.6
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
..++|++..++.+..++..+++. .+-++|+.|+||||+|+.+.+....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 56889999999999988765554 6889999999999999999987653
No 90
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.81 E-value=9e-05 Score=88.69 Aligned_cols=47 Identities=32% Similarity=0.469 Sum_probs=37.9
Q ss_pred ccccchHHHHH---HHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLK---SIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+.|+|++..+. .+...+..+....+.++|++|+||||+|+.+++...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 45788887764 455666667777889999999999999999998765
No 91
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00023 Score=79.76 Aligned_cols=168 Identities=12% Similarity=0.130 Sum_probs=94.1
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 161 EAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
++++|.+..++.+..++..+++. .+.++|+.|+||||+|+.+++.......... ..+....+ .+.+......
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~~g~~~ 90 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEITKGISS 90 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHHccCCc
Confidence 45899999999998888876664 5789999999999999999987653211110 00110001 1122111110
Q ss_pred CC-----CCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--ccccccccccCCCCCCcEEEe--------------
Q 037935 240 EL-----SDEAEYRRASRLYERLK----NENKILVILDNIWKY--LDLDTIGIPFGNDHEGYNFLI-------------- 294 (1085)
Q Consensus 240 ~~-----~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ilv-------------- 294 (1085)
.. ......+.+..+.+.+. .++.-++|+|+++.. ..++.+...+-. ..+..++|
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-Pp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-PPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-CCCceEEEeecCChhhccHHHH
Confidence 00 00001112222322222 356779999999865 345555433322 22233322
Q ss_pred --------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHH
Q 037935 295 --------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIAL 337 (1085)
Q Consensus 295 --------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 337 (1085)
.+++.++..+.+...+... ...--++....|++.++|-+.-+
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~E-gi~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIE-NVQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCChHHHH
Confidence 7888888877777765311 11223566788888888877443
No 92
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.80 E-value=0.00014 Score=75.92 Aligned_cols=55 Identities=15% Similarity=0.296 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC
Q 037935 166 RVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ 222 (1085)
Q Consensus 166 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 222 (1085)
.+..++.+..++.....+.+.|+|.+|+|||++|+.+++..... ....++++++.
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~ 76 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAE 76 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHH
Confidence 45567777777655566789999999999999999999876533 33456666543
No 93
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00057 Score=78.37 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=93.7
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhccCCC-----------------------EEE
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAREKKLFD-----------------------RVV 216 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-----------------------~~~ 216 (1085)
.+++|-+..++.+...+..+++ ..+-++|+.|+||||+|+.+++......... -++
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~ 100 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDII 100 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEE
Confidence 4578999988888887765554 5788999999999999999999765321110 111
Q ss_pred EEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--ccccccccccCCCCCCc
Q 037935 217 FSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKY--LDLDTIGIPFGNDHEGY 290 (1085)
Q Consensus 217 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~~~~~~~~~~~gs 290 (1085)
.++......+. .+..+.+... .+++-++|+|+++.. ..++.+...+.......
T Consensus 101 eidaas~~~vd---------------------~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~ 159 (507)
T PRK06645 101 EIDAASKTSVD---------------------DIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHI 159 (507)
T ss_pred EeeccCCCCHH---------------------HHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCE
Confidence 12221111111 1222222221 356778999999875 33555544443322233
Q ss_pred EEEe---------------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHH
Q 037935 291 NFLI---------------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIAL 337 (1085)
Q Consensus 291 ~ilv---------------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 337 (1085)
++|+ .+++.++..+.+...+.... .....+....|++.++|.+--+
T Consensus 160 vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg-i~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 160 IFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN-LKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 3332 88889999888887773211 1122456678999998876433
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00051 Score=76.48 Aligned_cols=155 Identities=12% Similarity=0.065 Sum_probs=89.3
Q ss_pred ccccchHHHHHHHHHHhccCC----------ceEEEEEcCCCCcHHHHHHHHHHHHhhc-------------------cC
Q 037935 161 EAFESRVSTLKSIQNALTDVN----------VSIIGVYGMGGIGKTTLVKEFARQAREK-------------------KL 211 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~~G~GKTtLa~~v~~~~~~~-------------------~~ 211 (1085)
+.++|.+..++.+..++..+. ..-+-++|+.|+|||++|+.+....-.. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 357899999999988887543 3557899999999999999998765332 12
Q ss_pred CCEEEEEEeC-CCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCC
Q 037935 212 FDRVVFSEVS-QTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHE 288 (1085)
Q Consensus 212 f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~ 288 (1085)
.|. .++... ....+.++ +++.+.+.... . .+++-++|+|+++... ..+.+...+.....
T Consensus 85 pD~-~~i~~~~~~i~i~~i-R~l~~~~~~~p---------------~-~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 85 PDV-RVVAPEGLSIGVDEV-RELVTIAARRP---------------S-TGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CCE-EEeccccccCCHHHH-HHHHHHHHhCc---------------c-cCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 222 222111 11222221 12222221100 0 2455577788887652 22333322222222
Q ss_pred CcEEEe---------------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHH
Q 037935 289 GYNFLI---------------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTT 339 (1085)
Q Consensus 289 gs~ilv---------------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 339 (1085)
+..+|+ .+++.++..+.+....+- ..+.+..+++.++|.|.....
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV------DPETARRAARASQGHIGRARR 212 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCHHHHHH
Confidence 333333 888899988888754321 145678899999999875543
No 95
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00037 Score=80.54 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=40.9
Q ss_pred ccccchHHHHHHHHHHhccCCceE-EEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSI-IGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
++++|-+..++.+..++..+++.- +-++|+.|+||||+|+.+.+..-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 458999999999999998766654 689999999999999999987643
No 96
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00039 Score=78.60 Aligned_cols=175 Identities=14% Similarity=0.143 Sum_probs=95.5
Q ss_pred ccccchHHHHHHHHHHhccCCceE-EEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEE-eCCCcCHHHHHHHHHHHhC
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSI-IGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSE-VSQTPDIKKIQGEIAEKLG 238 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~ 238 (1085)
+.++|.+..++.+..++..+.+.. +.++|+.|+||||+|+.+.+.......++...|.. +..++..-...+.+...-.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~ 95 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTS 95 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCC
Confidence 568899999999988888766654 78999999999999999998875432111111110 0011111111111111000
Q ss_pred CC-----CCCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe-------------
Q 037935 239 LE-----LSDEAEYRRASRLYERLK----NENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI------------- 294 (1085)
Q Consensus 239 ~~-----~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv------------- 294 (1085)
.+ .......+.+..+.+.+. .+.+-++|+|+++... .++.+...+......+.+|+
T Consensus 96 ~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~ 175 (397)
T PRK14955 96 LNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA 175 (397)
T ss_pred CCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHH
Confidence 00 000011122223333331 2566688999987653 45555444443333444443
Q ss_pred --------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHH
Q 037935 295 --------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIA 336 (1085)
Q Consensus 295 --------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 336 (1085)
.++++++..+.+...+... ...--.+.+..|++.++|.+--
T Consensus 176 sR~~~v~f~~l~~~ei~~~l~~~~~~~-g~~i~~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 176 SRCQRFNFKRIPLEEIQQQLQGICEAE-GISVDADALQLIGRKAQGSMRD 224 (397)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHH
Confidence 7777777777777665211 1112256678888888886643
No 97
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.3e-06 Score=87.39 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=20.0
Q ss_pred ccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchH
Q 037935 710 CFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQ 752 (1085)
Q Consensus 710 ~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~ 752 (1085)
.+++|+.|.|.+...-..+ ...+.+-.+|+.|+++.|..+.
T Consensus 208 ~C~kLk~lSlEg~~LdD~I--~~~iAkN~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPI--VNTIAKNSNLVRLNLSMCSGFT 248 (419)
T ss_pred HHHhhhhccccccccCcHH--HHHHhccccceeeccccccccc
Confidence 4455555555554322222 2234555556666666555443
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00031 Score=82.30 Aligned_cols=172 Identities=13% Similarity=0.117 Sum_probs=92.5
Q ss_pred ccccchHHHHHHHHHHhccCCceE-EEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhC-
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSI-IGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLG- 238 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~- 238 (1085)
++++|.+..++.+...+..+++.. +.++|..|+||||+|+.+.+..-....+. ...+..-...+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~~~ 88 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGRFV 88 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCCCC
Confidence 568999999999999888766644 57899999999999999988765421110 001111111111110000
Q ss_pred ----CCCCCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe--------------
Q 037935 239 ----LELSDEAEYRRASRLYERLK----NENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI-------------- 294 (1085)
Q Consensus 239 ----~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv-------------- 294 (1085)
.+.......+.+..+.+.+. .+++-++|+|+++... ..+.+...+-.-....++|+
T Consensus 89 D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S 168 (647)
T PRK07994 89 DLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 (647)
T ss_pred CceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh
Confidence 00000001111222222211 3667788999987652 23333222211111111111
Q ss_pred -------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHH
Q 037935 295 -------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTV 340 (1085)
Q Consensus 295 -------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 340 (1085)
.+++.++..+.+....... ......+....|++.++|.+--+..+
T Consensus 169 RC~~~~f~~Ls~~ei~~~L~~il~~e-~i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 169 RCLQFHLKALDVEQIRQQLEHILQAE-QIPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hheEeeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 8999999988888766211 11222456678999999977644433
No 99
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.72 E-value=0.00065 Score=76.15 Aligned_cols=50 Identities=26% Similarity=0.368 Sum_probs=40.0
Q ss_pred CCCccccchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 158 KGYEAFESRVSTLKSIQNALT----D---------VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 158 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+.+.|++..++++.+.+. . ...+-+.++|++|+|||++|+++++...
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 334568899999999988764 1 1245689999999999999999999765
No 100
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.71 E-value=0.00088 Score=75.42 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=40.1
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|.+..++.+.+++..++. ..+-++|+.|+||||+|+.+.....
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999876655 4677899999999999999988764
No 101
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.70 E-value=0.0017 Score=67.63 Aligned_cols=105 Identities=19% Similarity=0.322 Sum_probs=74.3
Q ss_pred HHHHHHHHhc---cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCC----EEEEEEeCCCcCHHHHHHHHHHHhCCCC
Q 037935 169 TLKSIQNALT---DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFD----RVVFSEVSQTPDIKKIQGEIAEKLGLEL 241 (1085)
Q Consensus 169 ~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 241 (1085)
.++++.+.+. ....+-+.|||.+|+|||++++.+.........=+ .++.|.....++...+...|+.+++.+.
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 3444555554 34557799999999999999999998664321111 3677888999999999999999999887
Q ss_pred CCchHHHH-HHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 242 SDEAEYRR-ASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 242 ~~~~~~~~-~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
........ ......-++.-+--+||+|++.+.
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 54433332 233344455556678999999764
No 102
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.0005 Score=80.15 Aligned_cols=47 Identities=26% Similarity=0.395 Sum_probs=40.4
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+.++|.+..++.|..++..+++ ..+.++|..|+||||+|+.+.+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 5689999999999999886665 4678999999999999999988654
No 103
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00059 Score=77.50 Aligned_cols=158 Identities=12% Similarity=0.124 Sum_probs=90.2
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhc-------------------cCCCEEEEEEe
Q 037935 161 EAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAREK-------------------KLFDRVVFSEV 220 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~ 220 (1085)
++++|.+...+.+..++..+++. .+-++|+.|+||||+|+.+.+..-.. +.+.-++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 46889999888888888766665 78899999999999999998754211 11112344444
Q ss_pred CCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe----
Q 037935 221 SQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI---- 294 (1085)
Q Consensus 221 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv---- 294 (1085)
+....+.++ +++++..... -. .+++-++|+|++.... ..+.+...+..-....++|+
T Consensus 93 as~~~vddI-R~Iie~~~~~---------------P~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 93 ASNTSVDDI-KVILENSCYL---------------PI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred ccCCCHHHH-HHHHHHHHhc---------------cc-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 433333332 2222222100 00 2556678888886542 23444333332223333333
Q ss_pred -----------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHH
Q 037935 295 -----------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIA 336 (1085)
Q Consensus 295 -----------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 336 (1085)
.+++.++..+.+...+.... ..--++....|++.++|-+..
T Consensus 156 ~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg-i~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 156 VKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN-IEHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred hHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 67777777777776653211 112245566778888776643
No 104
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.69 E-value=1.1e-06 Score=98.34 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=103.7
Q ss_pred cccccceEEEeeccCcccccccC-CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCch-hhhccccc
Q 037935 489 DALKKCYAISLLNSSIHEVSLEF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKL 566 (1085)
Q Consensus 489 ~~~~~~r~Lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L 566 (1085)
..|.++...++++|.+..+..++ -++.|++|+|++|. ..++. ++..+.+|+.|||++|.+..+|. ....+. |
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk---~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK---FTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh---hhhhH--HHHhcccccccccccchhccccccchhhhh-h
Confidence 34556777888888877666555 45889999999987 45544 47889999999999999998884 223344 9
Q ss_pred cEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCC
Q 037935 567 RMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPD 641 (1085)
Q Consensus 567 ~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 641 (1085)
+.|++++| .++.+-. +.+|.+|+.||+++|-+. ....+.-++.|..|+.|.+.+|.+..-|.
T Consensus 235 ~~L~lrnN-~l~tL~g--ie~LksL~~LDlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 235 QLLNLRNN-ALTTLRG--IENLKSLYGLDLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred eeeeeccc-HHHhhhh--HHhhhhhhccchhHhhhh----------cchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 99999999 8888875 699999999999999874 33456667888889999999988765543
No 105
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0011 Score=73.29 Aligned_cols=174 Identities=14% Similarity=0.022 Sum_probs=95.8
Q ss_pred CCccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEE------EEEeCCCcCHHHHHH
Q 037935 159 GYEAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVV------FSEVSQTPDIKKIQG 231 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~------wv~~~~~~~~~~~~~ 231 (1085)
....++|.+...+.+.+.+..+++. .+-++|+.|+||+|+|..+.+..-.+....... =..+...+ ...+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~c~ 93 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PVAR 93 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hHHH
Confidence 3456899999999999998877765 488999999999999999988764322110000 00000000 1111
Q ss_pred HHHHHhCCC---------C-----CCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--cccccccccCCCCCCcE
Q 037935 232 EIAEKLGLE---------L-----SDEAEYRRASRLYERLK----NENKILVILDNIWKYL--DLDTIGIPFGNDHEGYN 291 (1085)
Q Consensus 232 ~i~~~l~~~---------~-----~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ 291 (1085)
.+...-..+ . ...-..+.+..+.+.+. .+++-++|+||++..+ ..+.+...+..-..+..
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 111000000 0 00011222333333332 3667788999987652 23333222222112222
Q ss_pred EEe---------------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHH
Q 037935 292 FLI---------------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTV 340 (1085)
Q Consensus 292 ilv---------------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 340 (1085)
+|+ .+++.++..+++....... .......+++.++|.|..+..+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 222 9999999999998765321 1222367899999999866543
No 106
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0014 Score=71.95 Aligned_cols=176 Identities=13% Similarity=0.051 Sum_probs=99.5
Q ss_pred CCccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhccC--CCEEEEEEeCCCcCHHHHHHHHHH
Q 037935 159 GYEAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAREKKL--FDRVVFSEVSQTPDIKKIQGEIAE 235 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~ 235 (1085)
....++|-+...+.+...+..+.+. .+.|+|..|+||||+|..+.+..-.... +... .....+.-....+.+..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQ 97 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHc
Confidence 4456899999999999998866654 5889999999999999999987754210 1110 00111111122233322
Q ss_pred H-------hCCCC-------CCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--cccccccccCCCCCCcE----
Q 037935 236 K-------LGLEL-------SDEAEYRRASRLYERLK----NENKILVILDNIWKYL--DLDTIGIPFGNDHEGYN---- 291 (1085)
Q Consensus 236 ~-------l~~~~-------~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~---- 291 (1085)
. +..+. ...-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+.....+..
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 1 10000 00111222333444333 3677789999998652 22222222211111111
Q ss_pred -----------------EEecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHH
Q 037935 292 -----------------FLIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTV 340 (1085)
Q Consensus 292 -----------------ilv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 340 (1085)
+-+.|++.++..+++...... .. -..+....+++.++|.|.....+
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~--~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG--SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 112999999999999874321 11 22456788999999999866543
No 107
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00054 Score=78.17 Aligned_cols=130 Identities=20% Similarity=0.191 Sum_probs=78.9
Q ss_pred ccccchHHHHHHHHHHhc------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALT------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
.+-+|-++.+++|+++|. .-+-+++++||++|||||.|++.+++....+ | +-++++.-.+..++-..--
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhccccc
Confidence 456799999999999986 2244799999999999999999999988754 5 2344555445444433332
Q ss_pred HHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcccccccccccCCCCCCcEEEecCCCHHHHHHHHHHhc
Q 037935 235 EKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYLDLDTIGIPFGNDHEGYNFLIGNLSEEEAWRLFKIMN 310 (1085)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~gs~ilv~~l~~~~~~~lf~~~~ 310 (1085)
..+|.- ...+.+-..+. +.+.=+++||.|+... ..+ .+. -+..+++.|++++--.+-.++.
T Consensus 398 TYIGam------PGrIiQ~mkka-~~~NPv~LLDEIDKm~------ss~-rGD-PaSALLEVLDPEQN~~F~DhYL 458 (782)
T COG0466 398 TYIGAM------PGKIIQGMKKA-GVKNPVFLLDEIDKMG------SSF-RGD-PASALLEVLDPEQNNTFSDHYL 458 (782)
T ss_pred cccccC------ChHHHHHHHHh-CCcCCeEEeechhhcc------CCC-CCC-hHHHHHhhcCHhhcCchhhccc
Confidence 333221 12222333333 3677899999986542 111 111 2223446666665555444444
No 108
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.67 E-value=0.00092 Score=67.22 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=28.8
Q ss_pred HHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 172 SIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 172 ~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.+.+.+..+++ ..+.++|+.|+||||+|+.+.+..-.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34555555556 57889999999999999999887653
No 109
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00061 Score=79.72 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=39.6
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
++++|-+..++.|..++..+++ ..+-++|..|+||||+|+.+.+..-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5688999989999998887666 4568999999999999999987654
No 110
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00095 Score=77.78 Aligned_cols=157 Identities=13% Similarity=0.149 Sum_probs=89.6
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhhcc-------------------CCCEEEEEEe
Q 037935 161 EAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAREKK-------------------LFDRVVFSEV 220 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 220 (1085)
.+++|.+..++.+..++..+++. .+.++|+.|+||||+|+.+.+..-... .|.-++++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 45789999999999988876665 457999999999999999988764321 1212233332
Q ss_pred CCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe----
Q 037935 221 SQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI---- 294 (1085)
Q Consensus 221 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv---- 294 (1085)
+....+.+ .++++..+.... ..+++-++|+|+++... ..+.+...+........+|+
T Consensus 96 ~~~~~vd~-ir~l~~~~~~~p----------------~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d 158 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQYAP----------------TRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (527)
T ss_pred cccCCHHH-HHHHHHHHhhCc----------------ccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCC
Confidence 22222222 122222221100 02567789999987653 23444333333222333333
Q ss_pred -----------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchH
Q 037935 295 -----------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPI 335 (1085)
Q Consensus 295 -----------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 335 (1085)
.+++.++..+.+...+.... .....+....|++.++|.+-
T Consensus 159 ~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 159 PQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-IPFDATALQLLARAAAGSMR 215 (527)
T ss_pred hhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHH
Confidence 66777777766666552111 11224556778888888664
No 111
>PRK06893 DNA replication initiation factor; Validated
Probab=97.66 E-value=0.00077 Score=69.86 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=30.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVS 221 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~ 221 (1085)
..+.+.|+|++|+|||+|++++++....+ ...+.|+++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 34678999999999999999999987654 3346777764
No 112
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.65 E-value=0.00035 Score=71.30 Aligned_cols=167 Identities=19% Similarity=0.187 Sum_probs=105.0
Q ss_pred CCccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEE-EEEeCCCcCHHHHHHHHHHHh
Q 037935 159 GYEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVV-FSEVSQTPDIKKIQGEIAEKL 237 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l 237 (1085)
..+.+.|.+..+..+.+.+.....++...+|++|.|||+-|..++...-..+.|.+.+ =.++|......-+-..+ .
T Consensus 34 t~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki-k-- 110 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI-K-- 110 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh-c--
Confidence 3456889999999999998877889999999999999999999998776655666543 34555433322110000 0
Q ss_pred CCCCCCchHHHHHHHHHHHH-----HcCCc-EEEEEeCCCCc--ccccccccccCCCCCCcEEEe---------------
Q 037935 238 GLELSDEAEYRRASRLYERL-----KNENK-ILVILDNIWKY--LDLDTIGIPFGNDHEGYNFLI--------------- 294 (1085)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l-----~~~~~-~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ilv--------------- 294 (1085)
....+.... ..-++ -++|||+++.. +.|..++........-++.++
T Consensus 111 -----------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 111 -----------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred -----------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 011111000 01233 47888999876 578877666554333444333
Q ss_pred ------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCc-hHHHHHH
Q 037935 295 ------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGL-PIALTTV 340 (1085)
Q Consensus 295 ------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~ 340 (1085)
.+|.+++...-++..+.... -.--.+..+.|++.++|- --|+.++
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~-v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEG-VDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 88888888888888773221 122256678899998883 4444443
No 113
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.61 E-value=2.8e-05 Score=80.34 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=58.1
Q ss_pred ccccceEEEeeccCccc-----ccccC-CCCCcceeeeccCCCc-cccccCh------hhhcCCCcceEEEecCCcccC-
Q 037935 490 ALKKCYAISLLNSSIHE-----VSLEF-ECPQLEFLHIDPKITF-AELNIPD------NFFKGMKKLRVVDLTRVRLFS- 555 (1085)
Q Consensus 490 ~~~~~r~Lsl~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~-~~~~l~~------~~~~~l~~Lr~L~Ls~~~i~~- 555 (1085)
....+..+.+++|.+.. +...+ +.++||.-++++-..- ....+|+ ..+.++++|++||||.|-+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 34478889999987632 22211 4457777777654210 0122332 234567799999999997642
Q ss_pred ----CchhhhccccccEEeccCcccccccchh
Q 037935 556 ----LPSSIGQLTKLRMLDLTDCLQLKFIVPN 583 (1085)
Q Consensus 556 ----lp~~i~~L~~L~~L~Ls~~~~l~~lp~~ 583 (1085)
+-.-|..++.|++|.|.+| .+...-..
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~ 138 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNC-GLGPEAGG 138 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcC-CCChhHHH
Confidence 2345677899999999999 77654433
No 114
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=3.6e-05 Score=77.45 Aligned_cols=84 Identities=20% Similarity=0.306 Sum_probs=57.2
Q ss_pred cCCCcceEEEecCCcccC---CchhhhccccccEEeccCccccc----ccchhhhhccccCCEEeccCCCcchhhcccCC
Q 037935 538 KGMKKLRVVDLTRVRLFS---LPSSIGQLTKLRMLDLTDCLQLK----FIVPNILSSFTRLEELYMGSCSIKWEVRKGNS 610 (1085)
Q Consensus 538 ~~l~~Lr~L~Ls~~~i~~---lp~~i~~L~~L~~L~Ls~~~~l~----~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~ 610 (1085)
...++++.|||.+|.|+. +-.-+.+|++|++|+|++| .+. ++| ..+.+|++|-|.++.+.|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~------ 136 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLP----LPLKNLRVLVLNGTGLSWT------ 136 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCc----ccccceEEEEEcCCCCChh------
Confidence 456788899999998865 3334578899999999988 443 333 2456888888888887542
Q ss_pred ccccccHHHhhcCCCCcEEEEEeccC
Q 037935 611 ERSNASLDELMHLQRLTTLEIDVEDD 636 (1085)
Q Consensus 611 ~~~~~~~~~l~~L~~L~~L~l~~~~~ 636 (1085)
..-..+..++.++.|+++.|..
T Consensus 137 ----~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 137 ----QSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred ----hhhhhhhcchhhhhhhhccchh
Confidence 1223456677777777776644
No 115
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.60 E-value=8.9e-06 Score=93.07 Aligned_cols=101 Identities=23% Similarity=0.318 Sum_probs=61.3
Q ss_pred hcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCcccccc
Q 037935 537 FKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNAS 616 (1085)
Q Consensus 537 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 616 (1085)
...+++|.+|++.+|.|..+...+..+++|++|++++| .|+.+.. +..+..|+.|++.+|.+. .
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N~i~-------------~ 154 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGNLIS-------------D 154 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhhheeccCcch-------------h
Confidence 45566677777777766666544666677777777776 6666655 466666777777777653 2
Q ss_pred HHHhhcCCCCcEEEEEeccCCCCCCc--ccccccceeeE
Q 037935 617 LDELMHLQRLTTLEIDVEDDSILPDG--LFTKKLERFDI 653 (1085)
Q Consensus 617 ~~~l~~L~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l 653 (1085)
+..+..+++|+.+++++|.+..+... -.+.+++.+.+
T Consensus 155 ~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 155 ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDL 193 (414)
T ss_pred ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhc
Confidence 23344466666666666666655552 23444444444
No 116
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.006 Score=61.91 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=42.5
Q ss_pred CccccchHHHHHHHHHHhc-----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 160 YEAFESRVSTLKSIQNALT-----DVNVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
-.+|+|.++.++++.=++. .+.+-.+-++|++|.||||||.-++++..+.
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 4569999998888765554 4567899999999999999999999998865
No 117
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.53 E-value=0.00023 Score=76.25 Aligned_cols=219 Identities=23% Similarity=0.278 Sum_probs=137.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCC-CEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLF-DRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 259 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 259 (1085)
..+-+.++|.|||||||++-.+.. ... .| +.+.++...+-.+...+.-.....++....... .....+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~--~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~--~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AAS--EYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGD--SAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhh--hcccceeeeeccccCchhHhHHHHHhhcccccccch--HHHHHHHHHHh-
Confidence 458899999999999999999988 442 36 457777777777888888888887877654311 11333444443
Q ss_pred CCcEEEEEeCCCCccc-ccccccccCCCCCCcEEEe----------------cCCCH-HHHHHHHHHhcCCC----CCCC
Q 037935 260 ENKILVILDNIWKYLD-LDTIGIPFGNDHEGYNFLI----------------GNLSE-EEAWRLFKIMNGDD----VENC 317 (1085)
Q Consensus 260 ~~~~LlvlDdv~~~~~-~~~~~~~~~~~~~gs~ilv----------------~~l~~-~~~~~lf~~~~~~~----~~~~ 317 (1085)
.+|.++|+||-.+..+ -..+...+..+...-.|+. .+|+. +++.++|...+... .-..
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~ 166 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTD 166 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecC
Confidence 8999999999755411 0001011111111111111 44443 37888887776311 1122
Q ss_pred CchHHHHHHHHHhCCchHHHHHHHHHHhcCCHHHHHHHHHH----hcCCCCCCCCCCcccchhhHHHHHhcCChHHHHHH
Q 037935 318 KFKPTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRE----LQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKI 393 (1085)
Q Consensus 318 ~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~----l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~c 393 (1085)
........|.++..|.|++|...++..+.....+-...++. +..-. .....-.+-....+.+||.-|.. -.+--
T Consensus 167 ~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~-r~a~~~~qtl~asl~ws~~lLtg-we~~~ 244 (414)
T COG3903 167 DNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGA-RLAVLRQQTLRASLDWSYALLTG-WERAL 244 (414)
T ss_pred CchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhccc-ccchhHHHhccchhhhhhHhhhh-HHHHH
Confidence 33677899999999999999999999886655554433331 11110 00111124467889999999987 46778
Q ss_pred HHhccccCCCCCHH
Q 037935 394 FLLCSLIGNSFYLI 407 (1085)
Q Consensus 394 f~~~s~fp~~i~~~ 407 (1085)
|.-++.|.-.|+.+
T Consensus 245 ~~rLa~~~g~f~~~ 258 (414)
T COG3903 245 FGRLAVFVGGFDLG 258 (414)
T ss_pred hcchhhhhhhhccc
Confidence 88888887776665
No 118
>PF14516 AAA_35: AAA-like domain
Probab=97.51 E-value=0.0082 Score=66.02 Aligned_cols=179 Identities=15% Similarity=0.217 Sum_probs=111.6
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-----cCHHHHHHHHH
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-----PDIKKIQGEIA 234 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~ 234 (1085)
...+++|...-+++.+.+.+. -..+.|.|+-.+|||+|...+.+..+.+ .+ .++++++..- .+..++++.++
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHHH
Confidence 345689986667777777642 4689999999999999999999888754 34 3557877642 24555555554
Q ss_pred ----HHhCCCCCCc-------hHHHHHHHHH-HHHH--cCCcEEEEEeCCCCccc------------------------c
Q 037935 235 ----EKLGLELSDE-------AEYRRASRLY-ERLK--NENKILVILDNIWKYLD------------------------L 276 (1085)
Q Consensus 235 ----~~l~~~~~~~-------~~~~~~~~~~-~~l~--~~~~~LlvlDdv~~~~~------------------------~ 276 (1085)
++++.+..-. .......... +.+. .+++.+|++|+|+.... |
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 4554432100 0011112222 2222 27899999999975421 1
Q ss_pred cccccccCC--------C------CCCcEEEecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHH
Q 037935 277 DTIGIPFGN--------D------HEGYNFLIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVAR 342 (1085)
Q Consensus 277 ~~~~~~~~~--------~------~~gs~ilv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 342 (1085)
..+...+.. . +-|..|-+++++.+|...|...+.... -.+..++|...+||+|.-+..++.
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~~~~~~~l~~~tgGhP~Lv~~~~~ 241 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----SQEQLEQLMDWTGGHPYLVQKACY 241 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----CHHHHHHHHHHHCCCHHHHHHHHH
Confidence 111000000 0 112223339999999999998875321 133389999999999999999999
Q ss_pred HHhc
Q 037935 343 ALRN 346 (1085)
Q Consensus 343 ~l~~ 346 (1085)
.+..
T Consensus 242 ~l~~ 245 (331)
T PF14516_consen 242 LLVE 245 (331)
T ss_pred HHHH
Confidence 8874
No 119
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.49 E-value=7e-06 Score=92.11 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=71.8
Q ss_pred hhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccc
Q 037935 536 FFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNA 615 (1085)
Q Consensus 536 ~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~ 615 (1085)
.+.-++.|+.|||++|++++.. .+..|++|++|||++| .++.+|.-....+ +|+.|++++|.+.
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~l~------------- 245 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNALT------------- 245 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeecccHHH-------------
Confidence 3455677888888888877765 6777888888888888 7777775221233 3888888888763
Q ss_pred cHHHhhcCCCCcEEEEEeccCCCCCCcc---cccccceeeEEec
Q 037935 616 SLDELMHLQRLTTLEIDVEDDSILPDGL---FTKKLERFDISIG 656 (1085)
Q Consensus 616 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~---~l~~L~~L~l~~~ 656 (1085)
.+..+.+|.+|+.|++++|-+....+-. .+..|..|.+..+
T Consensus 246 tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 246 TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 3455678888888888888766554432 5556666666543
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.0016 Score=76.47 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=41.5
Q ss_pred CccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
-+.++|.+..++.+..++..+++. .+-++|+.|+||||+|+.+.+..-.
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 356899999999999998866654 6889999999999999999987643
No 121
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=7.3e-05 Score=89.08 Aligned_cols=137 Identities=17% Similarity=0.173 Sum_probs=81.2
Q ss_pred ccceEEEeeccCc--cccccc--CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhcccccc
Q 037935 492 KKCYAISLLNSSI--HEVSLE--FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLR 567 (1085)
Q Consensus 492 ~~~r~Lsl~~~~~--~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~ 567 (1085)
.++++|++.+... ...+.. .-+|.|++|.+.+-.. ...+ -...+.++++|+.||+|+++++.+ ..+++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-DNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-cchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 4678888876432 111111 2578888888876432 1111 123466788888888888888877 5788888888
Q ss_pred EEeccCcccccccch-hhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC
Q 037935 568 MLDLTDCLQLKFIVP-NILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 568 ~L~Ls~~~~l~~lp~-~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 637 (1085)
.|.+.+= .+..-+. .-+-+|++|++||++.......+. ......+--..|++|+.|+++++.+.
T Consensus 199 ~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-----ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTK-----IIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhccCC-CCCchhhHHHHhcccCCCeeeccccccccchH-----HHHHHHHhcccCccccEEecCCcchh
Confidence 8887765 4433111 114678888888887765421110 01112222345778888888866553
No 122
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.002 Score=74.98 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=39.4
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
++++|.+..++.|..++..+++ ..+-++|+.|+||||+|+.+.+..-.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 4578988888888888876553 67778999999999999999987753
No 123
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0026 Score=75.67 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=39.6
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+.++|.+..++.+..++..+.+ ..+.++|..|+||||+|+.+.+...
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999888876555 4567999999999999999998764
No 124
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0022 Score=74.94 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=40.6
Q ss_pred ccccchHHHHHHHHHHhccCCceE-EEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSI-IGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
++++|.+...+.+..++..+++.. +.++|+.|+||||+|+.+.+...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468899999999999998777655 67999999999999999998765
No 125
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.42 E-value=0.00015 Score=52.03 Aligned_cols=37 Identities=32% Similarity=0.495 Sum_probs=31.6
Q ss_pred ccccEEeccCcccccccchhhhhccccCCEEeccCCCcc
Q 037935 564 TKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIK 602 (1085)
Q Consensus 564 ~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~ 602 (1085)
++|++|++++| +++.+|+. +++|++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~-l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE-LSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH-GTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCC-CCcccCch-HhCCCCCCEEEecCCCCC
Confidence 47999999999 99999987 499999999999999884
No 126
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.002 Score=78.50 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=40.9
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
..++|.+..++.|..++..+++. .+.++|..|+||||+|+.+.+....
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 45889999999999998876665 4789999999999999999988753
No 127
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.42 E-value=0.0049 Score=69.41 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=39.5
Q ss_pred CCccccchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 159 GYEAFESRVSTLKSIQNALT----D---------VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..+.+.|++..++++.+.+. . ...+-|.++|++|+|||++|+++++...
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 34568899999999888663 1 2346789999999999999999999765
No 128
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.002 Score=75.88 Aligned_cols=48 Identities=27% Similarity=0.332 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHHHHhccCCceE-EEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSI-IGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
+.++|.+..++.+..++..+.+.. +.++|+.|+||||+|+.+.+..-.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468899999999988887766644 889999999999999999987754
No 129
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.41 E-value=0.0013 Score=81.11 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=42.2
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+.++||+.++.+++..|......-+.++|.+|+||||+|+.+++...
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999998866666777999999999999999999764
No 130
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.0031 Score=71.00 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=40.4
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+.++|.+...+.+.+.+..+.. +.+.++|+.|+||||+|+.+.+...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5578999999999999886655 4788999999999999999988764
No 131
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.39 E-value=0.00039 Score=65.37 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=44.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCC-cE
Q 037935 185 IGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN-KI 263 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~ 263 (1085)
|.|+|++|+||||+|+.+++..... .+.++.+.-.+ .........+....+...... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-----FIEIDGSELIS---------------SYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-----EEEEETTHHHT---------------SSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-----ccccccccccc---------------ccccccccccccccccccccccce
Confidence 5789999999999999999997522 34444432110 011223334455555554444 89
Q ss_pred EEEEeCCCCc
Q 037935 264 LVILDNIWKY 273 (1085)
Q Consensus 264 LlvlDdv~~~ 273 (1085)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999998754
No 132
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.004 Score=71.67 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|.+...+.+..++..+.+. .+.++|+.|+||||+|+.++....
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45789999999999998766554 456899999999999999988754
No 133
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.36 E-value=0.00092 Score=82.98 Aligned_cols=100 Identities=18% Similarity=0.394 Sum_probs=65.8
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhcc---CC-CEEEEEEeCCCcCHHHHHHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKK---LF-DRVVFSEVSQTPDIKKIQGEIAEK 236 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~~~i~~~ 236 (1085)
+.++||+++++++++.|......-+.++|.+|+|||++|+.++....... .. +..+|. + +...++ .
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c-
Confidence 46899999999999999865556667999999999999999998764211 01 234442 1 111111 1
Q ss_pred hCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 237 LGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
+.... ..-.+.+..+.+.+...++.+|++|++..
T Consensus 249 -g~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~ 282 (821)
T CHL00095 249 -GTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHT 282 (821)
T ss_pred -cCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHH
Confidence 11111 12233456666666656789999999864
No 134
>PRK09087 hypothetical protein; Validated
Probab=97.36 E-value=0.0034 Score=64.55 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=85.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC-----CC---CCchHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL-----EL---SDEAEYRRASR 252 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~---~~~~~~~~~~~ 252 (1085)
..+.+.|||.+|+|||+|++.+++.... .+++.. .+..++...+.. +. ...+ ...+-.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~~~~~~~~l~iDDi~~~~~~-~~~lf~ 108 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAANAAAEGPVLIEDIDAGGFD-ETGLFH 108 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHHHhhhcCeEEEECCCCCCCC-HHHHHH
Confidence 3467999999999999999998876432 133332 111222111110 00 0011 222334
Q ss_pred HHHHHHcCCcEEEEEeCCCCcccccccccccC-CCCCCcEEEecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhC
Q 037935 253 LYERLKNENKILVILDNIWKYLDLDTIGIPFG-NDHEGYNFLIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACG 331 (1085)
Q Consensus 253 ~~~~l~~~~~~LlvlDdv~~~~~~~~~~~~~~-~~~~gs~ilv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~ 331 (1085)
++..+...++.+|+-=+. ....|......+. ....|-.+-+++++.++-.+++++++... ...--+++..-|++++.
T Consensus 109 l~n~~~~~g~~ilits~~-~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~-~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 109 LINSVRQAGTSLLMTSRL-WPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR-QLYVDPHVVYYLVSRME 186 (226)
T ss_pred HHHHHHhCCCeEEEECCC-ChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhh
Confidence 444444333333332221 1122322111111 11235556669999999999999888421 22333678888999998
Q ss_pred CchHHHHHHHHHHh------cC--CHHHHHHHHHH
Q 037935 332 GLPIALTTVARALR------NK--SLHEWKNALRE 358 (1085)
Q Consensus 332 glPlai~~~~~~l~------~~--~~~~w~~~~~~ 358 (1085)
|-.-++..+-..+. ++ +....+.+++.
T Consensus 187 r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 187 RSLFAAQTIVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 87766654333221 22 55566666553
No 135
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.35 E-value=0.00084 Score=71.36 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=33.8
Q ss_pred cccchHHHHHHHHHH---hc------------cCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 162 AFESRVSTLKSIQNA---LT------------DVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~---l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.++|.+..++++.+. .. .+....+.++|++|+||||+|+.+++...
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478887777666433 21 12446788999999999999999988753
No 136
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.35 E-value=2.6e-05 Score=69.13 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=61.7
Q ss_pred hcCCCcceEEEecCCcccCCchhhhc-cccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccc
Q 037935 537 FKGMKKLRVVDLTRVRLFSLPSSIGQ-LTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNA 615 (1085)
Q Consensus 537 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~-L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~ 615 (1085)
..+..+|...+|++|.+..+|..+.. .+-+..|+|++| .+..+|.+ +..++.|+.|+++.|.+. .
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~l~------------~ 114 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNPLN------------A 114 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCccc------------c
Confidence 44556677777777777777766643 346777777777 77777777 477777777777777762 3
Q ss_pred cHHHhhcCCCCcEEEEEeccCCCCCCcc
Q 037935 616 SLDELMHLQRLTTLEIDVEDDSILPDGL 643 (1085)
Q Consensus 616 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 643 (1085)
.+.-+..|.+|-.|+...|....++.++
T Consensus 115 ~p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 115 EPRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred chHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 3444555667777777777666666554
No 137
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.32 E-value=0.0037 Score=73.90 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|.+...+.+..++..+++. .+-++|+.|+||||+|+.+++..-
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 45789999999999988866654 557899999999999999988654
No 138
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0056 Score=72.61 Aligned_cols=156 Identities=12% Similarity=0.152 Sum_probs=90.6
Q ss_pred ccccchHHHHHHHHHHhccCCceE-EEEEcCCCCcHHHHHHHHHHHHhh---------------------ccCCCEEEEE
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSI-IGVYGMGGIGKTTLVKEFARQARE---------------------KKLFDRVVFS 218 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~---------------------~~~f~~~~wv 218 (1085)
+.++|.+...+.+..++..+.+.. +-++|+.|+||||+|+.+...... ..+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 468899999999999988766654 779999999999999998886532 123442 223
Q ss_pred EeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe--
Q 037935 219 EVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI-- 294 (1085)
Q Consensus 219 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv-- 294 (1085)
.......+.++. ++++++.... . .+++-++|+|++.... .++.+...+..-...+.+|+
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~P---------------~-~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIPP---------------Q-IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhCc---------------c-cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 333222222222 2222221110 0 1445577788776542 23334333322222222222
Q ss_pred -------------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchH
Q 037935 295 -------------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPI 335 (1085)
Q Consensus 295 -------------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 335 (1085)
.+++.++....+...+.... -..-.+.+..|++.++|-.-
T Consensus 159 t~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 159 TEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-ITAEPEALNVIAQKADGGMR 217 (614)
T ss_pred CCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHH
Confidence 78888888888877653211 12224567888899988654
No 139
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.29 E-value=1.8e-05 Score=93.86 Aligned_cols=195 Identities=23% Similarity=0.220 Sum_probs=92.0
Q ss_pred cCCccceeeeccCC-ceeeecccCCcCccCCceEEEec-CCcccccch-hHHhhccccceEEeecccccEEEecCCcccc
Q 037935 834 ILPNLEGLALSGKD-ITMILQDDFPQHLFGSLKQLRVG-DDDLACFPL-DLLERFHNLEFLYLSDCSYEVVFSNEGYLET 910 (1085)
Q Consensus 834 ~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 910 (1085)
.+++|+.|+++.+. +++.....+... +++|+.|.+. |..++.... .....+++|+.|++++|... ...+....
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~-c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~---~d~~l~~~ 316 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASR-CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL---TDSGLEAL 316 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhh-CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc---hHHHHHHH
Confidence 35677777777777 555443333322 5677777765 333544332 23346788888888888732 11111111
Q ss_pred ccccccccceeccCC---cccccccccCCCchhhhHh-hhhceeeeeccccccccCCCCcccccCcc-EEEeccccCccc
Q 037935 911 HARKLALIKRLNLTR---LNHLQQLWKHDSKELDFIF-QHLQILRVLHCQNLLSLLPSSSVSFRNLT-RLETFACKKLMN 985 (1085)
Q Consensus 911 ~l~~l~~L~~L~l~~---c~~L~~l~~~~~~~~~~~l-~~L~~L~i~~c~~l~~~~~~~l~~l~~L~-~L~l~~c~~L~~ 985 (1085)
...+++|+.|.+.. |+.++.+...... ... ..+..+.+.+|++++.+...... ..... .+.+.+|++++
T Consensus 317 -~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~---~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~- 390 (482)
T KOG1947|consen 317 -LKNCPNLRELKLLSLNGCPSLTDLSLSGLL---TLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT- 390 (482)
T ss_pred -HHhCcchhhhhhhhcCCCccHHHHHHHHhh---ccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-
Confidence 33355555544433 3334433221100 011 14455555555555444222111 12222 45556676663
Q ss_pred ccchhhhhhcccccEEEEcCCcccccccccccccccccccceeecccccccccccccccee
Q 037935 986 LLTSSKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSKLSALSLFDLDSLTSF 1046 (1085)
Q Consensus 986 l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 1046 (1085)
...........+|+.|++..|...+...... .... ...+..+.+.+|+.+..-
T Consensus 391 ~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~------~~~~--~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 391 ESLELRLCRSDSLRVLNLSDCRLVTDKGLRC------LADS--CSNLKDLDLSGCRVITLK 443 (482)
T ss_pred hHHHHHhccCCccceEecccCccccccchHH------Hhhh--hhccccCCccCcccccch
Confidence 2112222233337777777776554432210 0000 455666666666665443
No 140
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.28 E-value=0.0068 Score=69.76 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=39.5
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+.++|-+...+.+..++..+++. ++-++|..|+||||+|+.+.+..-
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 45889999899999988776665 557899999999999999888753
No 141
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.27 E-value=0.0057 Score=63.67 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=36.5
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC
Q 037935 169 TLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ 222 (1085)
Q Consensus 169 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 222 (1085)
.+..+..+........+.|+|+.|+|||+|++.+++....+ -..+.++++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~ 83 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDK 83 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHH
Confidence 34444444444455789999999999999999999876643 23566777643
No 142
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.27 E-value=0.00096 Score=81.78 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=64.7
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhcc---CC-CEEEEEEeCCCcCHHHHHHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKK---LF-DRVVFSEVSQTPDIKKIQGEIAEK 236 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~~~i~~~ 236 (1085)
+.++||+.+++++++.|......-+.++|.+|+|||++|+.+++...... .+ +..+|. + +...+ ...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----LAG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----hhh
Confidence 56899999999999988866666778999999999999999999864321 11 233331 1 11111 110
Q ss_pred hCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 237 LGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
.... ......+..+.+.+.+.++.+|++|++...
T Consensus 253 --~~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l 286 (731)
T TIGR02639 253 --TKYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTI 286 (731)
T ss_pred --cccc-chHHHHHHHHHHHHhccCCeEEEEecHHHH
Confidence 0000 112234556666665467899999998743
No 143
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.26 E-value=0.0023 Score=73.11 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCc
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 262 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (1085)
.-+.|+|..|+|||.|++++.+.......-..+++++. .++...+...++... +....+.+.+ ...
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~------~~~~~~~~~~--~~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH------KEIEQFKNEI--CQN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh------hHHHHHHHHh--ccC
Confidence 56889999999999999999997653221123444443 456666666654210 1233444444 234
Q ss_pred EEEEEeCCCCcc---cc-cccccccCC-CCCCcEEEe----------------------------cCCCHHHHHHHHHHh
Q 037935 263 ILVILDNIWKYL---DL-DTIGIPFGN-DHEGYNFLI----------------------------GNLSEEEAWRLFKIM 309 (1085)
Q Consensus 263 ~LlvlDdv~~~~---~~-~~~~~~~~~-~~~gs~ilv----------------------------~~l~~~~~~~lf~~~ 309 (1085)
-+||+||+.... .+ +.+...+.. ...|..||+ ++++.++-.++++++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 478889996542 12 122111111 012223333 888888888988887
Q ss_pred cCCCCC-CCCchHHHHHHHHHhCCchHHHHHHHH
Q 037935 310 NGDDVE-NCKFKPTAINVAQACGGLPIALTTVAR 342 (1085)
Q Consensus 310 ~~~~~~-~~~~~~~~~~i~~~~~glPlai~~~~~ 342 (1085)
+..... ..--+++..-|++.++|.|-.+..+..
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 732111 123467788899999998876665443
No 144
>PRK08118 topology modulation protein; Reviewed
Probab=97.26 E-value=0.00018 Score=70.27 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhc-cCCCEEEE
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREK-KLFDRVVF 217 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~w 217 (1085)
+.|.|+|++|+||||+|+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999988754 45777776
No 145
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.26 E-value=0.0057 Score=69.96 Aligned_cols=47 Identities=26% Similarity=0.306 Sum_probs=40.2
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
++++|.+..++.+..++..+.+ ..+.++|+.|+||||+|+.+.+..-
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5688999999999999876665 5578899999999999999988764
No 146
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.26 E-value=5.5e-05 Score=86.60 Aligned_cols=104 Identities=23% Similarity=0.305 Sum_probs=67.7
Q ss_pred cccceEEEeeccCcccccc-cCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEE
Q 037935 491 LKKCYAISLLNSSIHEVSL-EFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRML 569 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L 569 (1085)
..++..+++.+|.+..+.. .-.+++|++|++++|. +.++.. +..+..|+.|++++|.|+.++ .+..++.|+.+
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~---I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK---ITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccc---cccccc--hhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 3456777777777777766 4456777777777776 555554 555666777777777776654 34457777777
Q ss_pred eccCcccccccchhhhhccccCCEEeccCCCc
Q 037935 570 DLTDCLQLKFIVPNILSSFTRLEELYMGSCSI 601 (1085)
Q Consensus 570 ~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~ 601 (1085)
++++| .+..+.......+.+|+.+++.+|.+
T Consensus 168 ~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 168 DLSYN-RIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cCCcc-hhhhhhhhhhhhccchHHHhccCCch
Confidence 77777 66666552025667777777777765
No 147
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.22 E-value=0.008 Score=60.70 Aligned_cols=90 Identities=17% Similarity=0.251 Sum_probs=60.5
Q ss_pred CCCccccchHHHHHHHHHH----hccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHH
Q 037935 158 KGYEAFESRVSTLKSIQNA----LTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEI 233 (1085)
Q Consensus 158 ~~~~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 233 (1085)
...+.++|-|..++.+++- +......-+-+||..|+|||++++++.+....++ .+ -|.|.+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k----------- 88 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSK----------- 88 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECH-----------
Confidence 4456789999998888763 3344566788899999999999999999887653 11 233332
Q ss_pred HHHhCCCCCCchHHHHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 037935 234 AEKLGLELSDEAEYRRASRLYERLK-NENKILVILDNIWKY 273 (1085)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~ 273 (1085)
.+...+..+.+.+. ...||+|++||+.-+
T Consensus 89 -----------~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe 118 (249)
T PF05673_consen 89 -----------EDLGDLPELLDLLRDRPYKFILFCDDLSFE 118 (249)
T ss_pred -----------HHhccHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 11122333444443 478999999998543
No 148
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00024 Score=71.64 Aligned_cols=174 Identities=19% Similarity=0.183 Sum_probs=108.9
Q ss_pred cccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccc-hhHHhhccccceEEeecccccEEEecCCcc
Q 037935 830 SFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFP-LDLLERFHNLEFLYLSDCSYEVVFSNEGYL 908 (1085)
Q Consensus 830 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 908 (1085)
.+.+++|.|+.|+|+.|++...... .+ -...+|+.|-+.+..+.--. ...+..+|.++.|+++.|++..+--+....
T Consensus 91 ~ile~lP~l~~LNls~N~L~s~I~~-lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~ 168 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNSLSSDIKS-LP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI 168 (418)
T ss_pred HHHhcCccceEeeccCCcCCCcccc-Cc-ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc
Confidence 4456789999999999996543322 21 11578999999876664221 234567888999999999754432211100
Q ss_pred ccccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEeccccCcccccc
Q 037935 909 ETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLT 988 (1085)
Q Consensus 909 ~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~ 988 (1085)
+ .--+.++.|+...|....-..... ....+|++..+.+..||-=+.-...+...++.+.-|+++. +++.+...
T Consensus 169 e---~~s~~v~tlh~~~c~~~~w~~~~~---l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswas 241 (418)
T KOG2982|consen 169 E---DWSTEVLTLHQLPCLEQLWLNKNK---LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWAS 241 (418)
T ss_pred c---ccchhhhhhhcCCcHHHHHHHHHh---HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHH
Confidence 0 011346666666665433222211 2246899999999998632222233455677777888865 56777755
Q ss_pred hhhhhhcccccEEEEcCCcccccc
Q 037935 989 SSKAKSLERLVSLRIFGCPAMTEV 1012 (1085)
Q Consensus 989 ~~~~~~l~~L~~L~i~~c~~l~~l 1012 (1085)
-..+..+++|..|.+.+.|-...+
T Consensus 242 vD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 242 VDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHHHcCCchhheeeccCCcccccc
Confidence 566778899999999998855444
No 149
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.21 E-value=0.0031 Score=69.53 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=39.9
Q ss_pred CccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 160 YEAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
-+.++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++...
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 35689999999999999876654 5666699999999999999988753
No 150
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0076 Score=71.48 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=40.6
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
..++|.+...+.+..++..+++ ..+-++|..|+||||+|+.+++..-.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4678999999999888876544 57789999999999999999998754
No 151
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.18 E-value=4.4e-05 Score=90.43 Aligned_cols=243 Identities=29% Similarity=0.318 Sum_probs=134.1
Q ss_pred CCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccC-C-ceeee--cccCCcCccCCceEEEec
Q 037935 795 WPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGK-D-ITMIL--QDDFPQHLFGSLKQLRVG 870 (1085)
Q Consensus 795 ~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n-~-l~~~~--~~~~~~~~~~~L~~L~l~ 870 (1085)
+|.|+.+.+.+|..+.... +..+...+++|+.|+++++ . ..... .... ...+++|+.|+++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~--------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~l~l~ 251 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS--------------LDALALKCPNLEELDLSGCCLLITLSPLLLLLL-LSICRKLKSLDLS 251 (482)
T ss_pred CchhhHhhhcccccCChhh--------------HHHHHhhCchhheecccCcccccccchhHhhhh-hhhcCCcCccchh
Confidence 5667777777776655321 2233456788999999873 2 22111 1111 2236889999999
Q ss_pred CCc-ccccchhHHh-hccccceEEeeccc-ccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhh
Q 037935 871 DDD-LACFPLDLLE-RFHNLEFLYLSDCS-YEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHL 947 (1085)
Q Consensus 871 ~n~-l~~~~~~~~~-~l~~L~~L~l~~~~-l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L 947 (1085)
... ++......+. .+++|+.|.+.+|. +++. + .......+++|++|+++.|..++.-.. ......+++|
T Consensus 252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~----g-l~~i~~~~~~L~~L~l~~c~~~~d~~l---~~~~~~c~~l 323 (482)
T KOG1947|consen 252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE----G-LVSIAERCPSLRELDLSGCHGLTDSGL---EALLKNCPNL 323 (482)
T ss_pred hhhccCchhHHHHHhhCCCcceEccCCCCccchh----H-HHHHHHhcCcccEEeeecCccchHHHH---HHHHHhCcch
Confidence 444 7766544444 48999999988888 4332 1 112235678899999999888733211 1122345666
Q ss_pred ceeeeeccc---cccccCCCCcccc--cCccEEEeccccCcccccchhhhhhccccc-EEEEcCCccc-ccccccccccc
Q 037935 948 QILRVLHCQ---NLLSLLPSSSVSF--RNLTRLETFACKKLMNLLTSSKAKSLERLV-SLRIFGCPAM-TEVIISDEDET 1020 (1085)
Q Consensus 948 ~~L~i~~c~---~l~~~~~~~l~~l--~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~-~L~i~~c~~l-~~l~~~~~~~~ 1020 (1085)
+.|.+..+. .++.+.-.+.... ..+..+.+.+|++++++.. .... ..... .+.+.+|+.+ ..+..
T Consensus 324 ~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l-~~~~-~~~~~~~~~l~gc~~l~~~l~~------ 395 (482)
T KOG1947|consen 324 RELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSL-SYCG-ISDLGLELSLRGCPNLTESLEL------ 395 (482)
T ss_pred hhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhh-hhhh-ccCcchHHHhcCCcccchHHHH------
Confidence 665554443 3433311111111 1455566666666665521 1111 22222 4566677766 22211
Q ss_pred cccccceeeccccccccccccccceecCCCccccCCCcCceeeccCCCcccc
Q 037935 1021 ANLKEEIVFSKLSALSLFDLDSLTSFSSGNYAFKLPSLQDLWVIGCPKMKLF 1072 (1085)
Q Consensus 1021 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l 1072 (1085)
......+++.|.+..|...+.-........+..+..+++.+|+.+..-
T Consensus 396 ----~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 396 ----RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred ----HhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 111133388899998887654443321112677888888888876543
No 152
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.069 Score=54.50 Aligned_cols=162 Identities=20% Similarity=0.257 Sum_probs=95.5
Q ss_pred cccchHHHHHHHHHHhc------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHH
Q 037935 162 AFESRVSTLKSIQNALT------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKI 229 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 229 (1085)
.+-|-+..++.+.++.. ....+-|.++|++|.||+.||++|+.+.... |.+||..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSS------ 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSS------ 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehH------
Confidence 45677888888777643 1236889999999999999999999876522 3455543
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc------ccc---cc-----ccccCCCCCCcEEEe-
Q 037935 230 QGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYL------DLD---TI-----GIPFGNDHEGYNFLI- 294 (1085)
Q Consensus 230 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~------~~~---~~-----~~~~~~~~~gs~ilv- 294 (1085)
++...+.+. ....+..+++-.+.+|+-+|.+|.|+..- +-+ .+ ...-..+.....|+|
T Consensus 201 --DLvSKWmGE-----SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 201 --DLVSKWMGE-----SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred --HHHHHHhcc-----HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 222222211 23445667776678999999999987531 111 11 111122333445666
Q ss_pred ----------------------cCCCHHHHHH-HHHHhcCCCCCCCCchHHHHHHHHHhCCc---hHHHHHHHHHH
Q 037935 295 ----------------------GNLSEEEAWR-LFKIMNGDDVENCKFKPTAINVAQACGGL---PIALTTVARAL 344 (1085)
Q Consensus 295 ----------------------~~l~~~~~~~-lf~~~~~~~~~~~~~~~~~~~i~~~~~gl---Plai~~~~~~l 344 (1085)
-||++..|.. +|+-+.|+. +..--++..+.++++..|. -.+|++--.+|
T Consensus 274 gATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~t-p~~LT~~d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 274 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDT-PHVLTEQDFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred ecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCC-ccccchhhHHHHHhhcCCCCcCceEEEehhhhh
Confidence 6777777764 555555532 2223344456677776654 34444444444
No 153
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.17 E-value=0.0037 Score=64.11 Aligned_cols=50 Identities=30% Similarity=0.480 Sum_probs=33.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKL 237 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 237 (1085)
...+.|+|..|+|||.|.+++++.......=..+++++. .++...+...+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~ 83 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADAL 83 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHH
Confidence 456889999999999999999998764322224666554 34444444443
No 154
>PHA00729 NTP-binding motif containing protein
Probab=97.17 E-value=0.0021 Score=64.58 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=29.3
Q ss_pred HHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 171 KSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 171 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+++++.+...+...|.|+|.+|+||||||..+.+...
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455555555667899999999999999999998753
No 155
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.17 E-value=6.7e-05 Score=89.37 Aligned_cols=138 Identities=17% Similarity=0.146 Sum_probs=84.7
Q ss_pred CCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCc
Q 037935 769 FPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDI 848 (1085)
Q Consensus 769 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l 848 (1085)
-.+|++|++++...+..-++......+|+|++|.+.+-.-... .+.....++|+|..||||++++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~---------------dF~~lc~sFpNL~sLDIS~TnI 185 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND---------------DFSQLCASFPNLRSLDISGTNI 185 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch---------------hHHHHhhccCccceeecCCCCc
Confidence 3578888888866554434444456688999888876532111 1223345689999999999987
Q ss_pred eeeecccCCcCccCCceEEEecCCcccccc-hhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCC
Q 037935 849 TMILQDDFPQHLFGSLKQLRVGDDDLACFP-LDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTR 925 (1085)
Q Consensus 849 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 925 (1085)
+.+. +-+.+.+|+.|.+.+=.+.... ...+-+|++|+.||+|.-............-++...||.|+.|+.++
T Consensus 186 ~nl~----GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 186 SNLS----GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cCcH----HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 7662 2233788888888765554422 22334788899999888773332211111123344577777777765
No 156
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.16 E-value=0.0039 Score=67.54 Aligned_cols=101 Identities=10% Similarity=0.123 Sum_probs=68.3
Q ss_pred HHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCE-EEEEEeCC-CcCHHHHHHHHHHHhCCCCCCchHH
Q 037935 171 KSIQNALTD-VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDR-VVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEY 247 (1085)
Q Consensus 171 ~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~ 247 (1085)
.++++.+.. +.-..+.|+|.+|+|||||++.+.+....+ +-+. ++|+-+.+ ..++.++++.+...+.....+....
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 447777762 334577999999999999999999977643 2344 46777754 4578899999988777654322211
Q ss_pred H------HHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 248 R------RASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 248 ~------~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
. .+....+++. ++++.+||+|++..
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 2223333333 69999999999854
No 157
>CHL00181 cbbX CbbX; Provisional
Probab=97.16 E-value=0.0085 Score=64.13 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
..+.++|.+|+||||+|+.+++....
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999887643
No 158
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.15 E-value=7.5e-05 Score=66.34 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=58.1
Q ss_pred CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccC
Q 037935 512 ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRL 591 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L 591 (1085)
...+|....+++|. ..++|+.+-.+++.++.|+|++|.|..+|..+..++.||.|++++| .+...|.-+ ..|.+|
T Consensus 51 ~~~el~~i~ls~N~---fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi-~~L~~l 125 (177)
T KOG4579|consen 51 KGYELTKISLSDNG---FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVI-APLIKL 125 (177)
T ss_pred CCceEEEEecccch---hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHH-HHHHhH
Confidence 34556666666665 5666666666666777777777777777777777777777777777 666666554 557777
Q ss_pred CEEeccCCCc
Q 037935 592 EELYMGSCSI 601 (1085)
Q Consensus 592 ~~L~L~~~~~ 601 (1085)
-.|+..+|-+
T Consensus 126 ~~Lds~~na~ 135 (177)
T KOG4579|consen 126 DMLDSPENAR 135 (177)
T ss_pred HHhcCCCCcc
Confidence 7777666655
No 159
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.14 E-value=0.0013 Score=62.76 Aligned_cols=89 Identities=21% Similarity=0.165 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCc
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 262 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (1085)
..+.|+|++|+||||+++.++....... ..++.+..+........... ...........................+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999876432 23555555443332222211 11111112222233334455555543445
Q ss_pred EEEEEeCCCCcc
Q 037935 263 ILVILDNIWKYL 274 (1085)
Q Consensus 263 ~LlvlDdv~~~~ 274 (1085)
.++++|+++...
T Consensus 80 ~viiiDei~~~~ 91 (148)
T smart00382 80 DVLILDEITSLL 91 (148)
T ss_pred CEEEEECCcccC
Confidence 999999998764
No 160
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.14 E-value=0.00056 Score=65.46 Aligned_cols=101 Identities=22% Similarity=0.233 Sum_probs=61.6
Q ss_pred cceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhh
Q 037935 542 KLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELM 621 (1085)
Q Consensus 542 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 621 (1085)
....+||++|.+..++ .+..+..|.+|.|++| .|+.+.+.+-.-+++|..|.|.+|.+... ..+..+.
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l----------~dl~pLa 110 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQEL----------GDLDPLA 110 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhh----------hhcchhc
Confidence 4456666676666554 3556667777777777 67766666544456677777777766422 2234456
Q ss_pred cCCCCcEEEEEeccCCCCCCcc-----cccccceeeEE
Q 037935 622 HLQRLTTLEIDVEDDSILPDGL-----FTKKLERFDIS 654 (1085)
Q Consensus 622 ~L~~L~~L~l~~~~~~~~~~~~-----~l~~L~~L~l~ 654 (1085)
.+++|++|.+-+|..+..+..- .+++|+.|+..
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 6677777777777665544331 55666666654
No 161
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.019 Score=57.77 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=97.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeC-CCcCHHHHHHHHHHHhCCCCCCc--hHHHHHH-HHH
Q 037935 179 DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVS-QTPDIKKIQGEIAEKLGLELSDE--AEYRRAS-RLY 254 (1085)
Q Consensus 179 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~-~~~ 254 (1085)
..+-+++.++|.-|.|||.++|+........ .++-|.+. +..+...+...|...+....... ....... .+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 4456799999999999999999665554322 22223443 45677888888888887633211 1112222 233
Q ss_pred HHHHcCCc-EEEEEeCCCCc--ccccccccccCCC---------------------------CCCcE----EEecCCCHH
Q 037935 255 ERLKNENK-ILVILDNIWKY--LDLDTIGIPFGND---------------------------HEGYN----FLIGNLSEE 300 (1085)
Q Consensus 255 ~~l~~~~~-~LlvlDdv~~~--~~~~~~~~~~~~~---------------------------~~gs~----ilv~~l~~~ 300 (1085)
....+++| ..++.||.... +..+.++....-. ..+-| |.+.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 33336777 99999998654 2222221110000 01122 223999999
Q ss_pred HHHHHHHHhcCCCC-CCCCc-hHHHHHHHHHhCCchHHHHHHHHH
Q 037935 301 EAWRLFKIMNGDDV-ENCKF-KPTAINVAQACGGLPIALTTVARA 343 (1085)
Q Consensus 301 ~~~~lf~~~~~~~~-~~~~~-~~~~~~i~~~~~glPlai~~~~~~ 343 (1085)
+...+++.+..... ..+-+ .+....|..+..|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999888874222 22222 455678999999999999877654
No 162
>PRK08727 hypothetical protein; Validated
Probab=97.11 E-value=0.011 Score=61.43 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=37.4
Q ss_pred cccchH-HHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeC
Q 037935 162 AFESRV-STLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVS 221 (1085)
Q Consensus 162 ~~~gr~-~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~ 221 (1085)
+|++.. ..+..+...........+.|+|..|+|||.|++++++....+ ...+.++++.
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~ 78 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQ 78 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHH
Confidence 344333 334433333333334579999999999999999999886644 2356677653
No 163
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.012 Score=69.60 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
++++|.+...+.+..++..+++. .+-++|..|+||||+|+.+.+..-
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 56899999999999998876664 567999999999999999988764
No 164
>PRK10536 hypothetical protein; Provisional
Probab=97.07 E-value=0.0047 Score=63.15 Aligned_cols=54 Identities=24% Similarity=0.232 Sum_probs=40.9
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEE
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVV 216 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~ 216 (1085)
..+.+|......++.++.+. .++.+.|.+|+|||+||.++..+.-..+.|+.++
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 44677888888888888653 5999999999999999999888533223455444
No 165
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.06 E-value=0.0047 Score=66.18 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeC
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVS 221 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~ 221 (1085)
-+.++|.+|+|||++|+.++......+.....-|+.++
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 58899999999999999888876543322222345554
No 166
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.012 Score=68.98 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=40.2
Q ss_pred ccccchHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|-+..++.+..++..+++. .+-++|+.|+||||+|+.+++..-
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 46889999999999998866654 577999999999999999998764
No 167
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.99 E-value=0.0023 Score=65.14 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
-.++|+|..|.||||++..+..... ..|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 4678999999999999999988766 45888877654
No 168
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.99 E-value=0.0029 Score=72.33 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=38.7
Q ss_pred CccccchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 160 YEAFESRVSTLKSIQNALT----D---------VNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
-+.+.|.+..++++.+.+. . ...+-+.++|++|+|||++|+++++....
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 3457789999988887754 0 23456889999999999999999998753
No 169
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.99 E-value=0.017 Score=68.05 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=39.4
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+.++|.+...+.+..++..++. ..+-++|+.|+||||+|+.+.+..-
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5689999999999999876555 4467799999999999999988654
No 170
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.05 Score=58.99 Aligned_cols=176 Identities=14% Similarity=0.163 Sum_probs=95.9
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhcc-------------CCCEEEEEEeCCCcCH
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAREKK-------------LFDRVVFSEVSQTPDI 226 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------~f~~~~wv~~~~~~~~ 226 (1085)
..++|.+...+.+...+..+++ ...-++|+.|+||+++|..+.+..-... ...-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 3578999999999999887665 7888999999999999998887653221 1122334321100000
Q ss_pred HHHHHHHHHHhCC--CCCCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe----
Q 037935 227 KKIQGEIAEKLGL--ELSDEAEYRRASRLYERLK----NENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI---- 294 (1085)
Q Consensus 227 ~~~~~~i~~~l~~--~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv---- 294 (1085)
..+-..-+...+. .....-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+-.-.+..-|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 0000111111110 0001111222333433332 3567788888876552 23333333322121211222
Q ss_pred ----------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHH
Q 037935 295 ----------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTV 340 (1085)
Q Consensus 295 ----------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 340 (1085)
.++++++..+.+........ .......++..++|.|..+...
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----chhHHHHHHHHcCCCHHHHHHH
Confidence 89999999999987652111 1112367899999999766543
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.91 E-value=0.0032 Score=78.13 Aligned_cols=132 Identities=14% Similarity=0.206 Sum_probs=77.2
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccC----CC-EEEEEEeCCCcCHHHHHHHHH
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKL----FD-RVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~-~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
-+.++||+.+++++++.|......-+.++|.+|+|||++|+.+......... .. .++++.++. +.
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~---- 246 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV---- 246 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh----
Confidence 3568999999999999998666667779999999999999999987642110 01 223333321 10
Q ss_pred HHhCCCCCCchHHHHHHHHHHHHH-cCCcEEEEEeCCCCccc---------ccccccccCCCCCCcEEEecCCCHHHHHH
Q 037935 235 EKLGLELSDEAEYRRASRLYERLK-NENKILVILDNIWKYLD---------LDTIGIPFGNDHEGYNFLIGNLSEEEAWR 304 (1085)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~~~---------~~~~~~~~~~~~~gs~ilv~~l~~~~~~~ 304 (1085)
. +.... ..-.+.+..+.+.+. .+++.+|++|++..... ...+. .|.-..|...+|..-+.++...
T Consensus 247 a--g~~~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~l--kp~l~~g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 247 A--GAKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNML--KPALARGELHCVGATTLDEYRQ 321 (857)
T ss_pred h--ccchh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHh--cchhhcCCCeEEEcCCCHHHHH
Confidence 0 00000 111223444554443 35789999999875421 11111 1222456556665556666555
Q ss_pred HH
Q 037935 305 LF 306 (1085)
Q Consensus 305 lf 306 (1085)
+|
T Consensus 322 ~~ 323 (857)
T PRK10865 322 YI 323 (857)
T ss_pred Hh
Confidence 54
No 172
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.89 E-value=0.001 Score=63.77 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=57.6
Q ss_pred CcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhc-cccccEEeccCcccccccch-hhhhccccCC
Q 037935 515 QLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQ-LTKLRMLDLTDCLQLKFIVP-NILSSFTRLE 592 (1085)
Q Consensus 515 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~-L~~L~~L~Ls~~~~l~~lp~-~~~~~L~~L~ 592 (1085)
....+++.+|. +..++. |..++.|..|.|++|+|+.+...++. +++|..|.|.+| .+..+.+ .-+..++.|+
T Consensus 43 ~~d~iDLtdNd---l~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDND---LRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccceecccccc---hhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccc
Confidence 44455555554 344443 56666666666666666666444433 455666666666 5544321 0035566667
Q ss_pred EEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEec
Q 037935 593 ELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVE 634 (1085)
Q Consensus 593 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 634 (1085)
+|.+-+|.+.. .......-+.++++|+.|+...-
T Consensus 117 ~Ltll~Npv~~--------k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNPVEH--------KKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCchhc--------ccCceeEEEEecCcceEeehhhh
Confidence 77666665521 11112233567777777776543
No 173
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.85 E-value=0.026 Score=64.65 Aligned_cols=111 Identities=23% Similarity=0.218 Sum_probs=77.5
Q ss_pred CccccchHHHHHHHHHHhc----c-CCceEEEEEcCCCCcHHHHHHHHHHHHh---hcc---CCCEEEEEEeCCCcCHHH
Q 037935 160 YEAFESRVSTLKSIQNALT----D-VNVSIIGVYGMGGIGKTTLVKEFARQAR---EKK---LFDRVVFSEVSQTPDIKK 228 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~---~~~---~f~~~~wv~~~~~~~~~~ 228 (1085)
++.+-+|+.+..+|-+++. + +..+.+.|.|-+|+|||..+..|.+..+ .++ .|+ .+.|+.-.=..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 4557799999999988875 3 3445899999999999999999999665 122 343 23455555667999
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCc
Q 037935 229 IQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKY 273 (1085)
Q Consensus 229 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~ 273 (1085)
++..|..++.+.... ....++.+..++. +.+.+++++|+++..
T Consensus 474 ~Y~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~L 520 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDIL 520 (767)
T ss_pred HHHHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHHH
Confidence 999999999765322 1222333333333 467889999997654
No 174
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.83 E-value=0.034 Score=57.87 Aligned_cols=168 Identities=13% Similarity=0.092 Sum_probs=79.8
Q ss_pred chHHH-HHHHHHHhc-cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC-C-
Q 037935 165 SRVST-LKSIQNALT-DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL-E- 240 (1085)
Q Consensus 165 gr~~~-~~~l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~- 240 (1085)
|+... +..+.++.. ....+.+.|+|..|+|||+||+.+++....++ . .+.+++....... + ..... .
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~-~-~~~~i~~~~~~~~------~-~~~~~~~~ 93 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG-R-NARYLDAASPLLA------F-DFDPEAEL 93 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-C-cEEEEehHHhHHH------H-hhcccCCE
Confidence 44333 344444433 23456789999999999999999999764322 2 3445555332111 0 00100 0
Q ss_pred ----C-C--CchHHHHHHHHHHHHHcCCcE-EEEEeCCCCcccccccccccC-CCCCCcEEEecCCCHHHHHHHHHHhcC
Q 037935 241 ----L-S--DEAEYRRASRLYERLKNENKI-LVILDNIWKYLDLDTIGIPFG-NDHEGYNFLIGNLSEEEAWRLFKIMNG 311 (1085)
Q Consensus 241 ----~-~--~~~~~~~~~~~~~~l~~~~~~-LlvlDdv~~~~~~~~~~~~~~-~~~~gs~ilv~~l~~~~~~~lf~~~~~ 311 (1085)
. . .......+-.+.+.....++. +++--+. ....+. +...+. ....+..|-+.|+++++-..++...+.
T Consensus 94 liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~-~~~~~~-l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 94 YAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPA-APLALP-LREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred EEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCC-CHHhCC-CCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 0 0 001111222233333223333 3332221 111121 111111 112245566688888776666665432
Q ss_pred CCCCCCCchHHHHHHHHHhCCchHHHHHHHHHH
Q 037935 312 DDVENCKFKPTAINVAQACGGLPIALTTVARAL 344 (1085)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 344 (1085)
. ....--++....+++.+.|.+..+..+...+
T Consensus 172 ~-~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 172 E-RGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred H-cCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1 1112235667778888888887776555543
No 175
>PRK07261 topology modulation protein; Provisional
Probab=96.82 E-value=0.0035 Score=61.54 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc-cCCCEEEE
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREK-KLFDRVVF 217 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~w 217 (1085)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998775432 23455666
No 176
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.80 E-value=0.012 Score=72.85 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHHhc------cCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 161 EAFESRVSTLKSIQNALT------DVNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
..++|.+..+++|.+++. ..+.+++.++|++|+|||++|+.+.+....
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 347899999999988764 123458999999999999999999998753
No 177
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.78 E-value=0.0039 Score=75.34 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=62.8
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhcc-C---CCEEEEEEeCCCcCHHHHHHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKK-L---FDRVVFSEVSQTPDIKKIQGEIAEK 236 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~~i~~~ 236 (1085)
+.++||+.+++++++.|......-+.++|.+|+|||++|+.++....... . .++.+|.. +... ++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----lla- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LLA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hhc-
Confidence 46899999999999988764445567899999999999999998653221 1 13444421 1111 110
Q ss_pred hCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 237 LGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
+..... .....+..+.+.+.+.++.+|++|++..
T Consensus 256 -G~~~~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~ 289 (758)
T PRK11034 256 -GTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHT 289 (758)
T ss_pred -ccchhh-hHHHHHHHHHHHHHhcCCCEEEeccHHH
Confidence 111111 1122344555556556778999999874
No 178
>CHL00176 ftsH cell division protein; Validated
Probab=96.78 E-value=0.018 Score=68.40 Aligned_cols=92 Identities=21% Similarity=0.263 Sum_probs=54.1
Q ss_pred ccccchHHHHHHHHHH---hccC---------CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHH
Q 037935 161 EAFESRVSTLKSIQNA---LTDV---------NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKK 228 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 228 (1085)
+++.|.++.++++.+. +... ..+-+.++|++|+|||++|++++...... |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----H
Confidence 4567877666555443 3321 23568899999999999999999876432 2333221 1
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 229 IQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 229 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
+... . .+. ....+..+++......+++|++||++.
T Consensus 252 f~~~-~--~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 252 FVEM-F--VGV------GAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred HHHH-h--hhh------hHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 1110 0 010 112234455555567889999999864
No 179
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.01 Score=62.43 Aligned_cols=96 Identities=24% Similarity=0.310 Sum_probs=64.2
Q ss_pred CCCccccchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc
Q 037935 158 KGYEAFESRVSTLKSIQNALT----D---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP 224 (1085)
Q Consensus 158 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 224 (1085)
.....+-|-++.+++|.+..+ . +..+-|-+||++|.|||-||++|++..... | +.|..+
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----IrvvgS- 219 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVVGS- 219 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEeccH-
Confidence 334456688999999888765 1 355788899999999999999999988754 4 444331
Q ss_pred CHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 225 DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 225 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
++.+..-+. ....+..+++-.+...+++|.+|.++..
T Consensus 220 -------ElVqKYiGE-----GaRlVRelF~lArekaPsIIFiDEIDAI 256 (406)
T COG1222 220 -------ELVQKYIGE-----GARLVRELFELAREKAPSIIFIDEIDAI 256 (406)
T ss_pred -------HHHHHHhcc-----chHHHHHHHHHHhhcCCeEEEEechhhh
Confidence 222222111 1223445555555688999999998643
No 180
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.73 E-value=0.0042 Score=77.42 Aligned_cols=100 Identities=14% Similarity=0.270 Sum_probs=63.1
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccC----CCEEEE-EEeCCCcCHHHHHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKL----FDRVVF-SEVSQTPDIKKIQGEIAE 235 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~i~~ 235 (1085)
+.++||+.++++++..|......-+.++|.+|+|||++|+.+......... ....+| +.+ ..+ ..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l----~a 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GAL----IA 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHH----hh
Confidence 568999999999999998666667779999999999999999887643211 122222 222 111 10
Q ss_pred HhCCCCCCchHHHHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 037935 236 KLGLELSDEAEYRRASRLYERLK-NENKILVILDNIWKY 273 (1085)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~ 273 (1085)
+.... ......+..+.+.+. .+++.+|++|++...
T Consensus 243 --~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l 278 (852)
T TIGR03346 243 --GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTL 278 (852)
T ss_pred --cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHh
Confidence 00111 112233455555553 256899999998754
No 181
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.69 E-value=0.016 Score=62.46 Aligned_cols=124 Identities=16% Similarity=0.167 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 037935 165 SRVSTLKSIQNALTD----VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE 240 (1085)
Q Consensus 165 gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 240 (1085)
+|....+...+++.. ...+-+.++|..|+|||.||.++++....+ .+. +.+++++ .++.++...++..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~-v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GVS-STLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCC-EEEEEHH------HHHHHHHHHHhcC
Confidence 555555555666542 245679999999999999999999998743 233 5556553 4556665554321
Q ss_pred CCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc--ccccc--ccccc-CC--CCCCcEEEecCCCHHHHHHHH
Q 037935 241 LSDEAEYRRASRLYERLKNENKILVILDNIWKY--LDLDT--IGIPF-GN--DHEGYNFLIGNLSEEEAWRLF 306 (1085)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~--~~~~~-~~--~~~gs~ilv~~l~~~~~~~lf 306 (1085)
......+.+ .+-=||||||+..+ ..|.. +...+ .. ....+.|+...++.++--+.|
T Consensus 207 --------~~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 207 --------SVKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred --------cHHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 123344444 46678999999654 45643 32222 21 245677777888877766655
No 182
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.67 E-value=0.01 Score=66.72 Aligned_cols=102 Identities=22% Similarity=0.202 Sum_probs=60.1
Q ss_pred chHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCc
Q 037935 165 SRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDE 244 (1085)
Q Consensus 165 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 244 (1085)
.|.....++.+.+..... ++.|+|+-++||||+++.+....... .+++..-+......-+.+.
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~----------- 83 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDL----------- 83 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHH-----------
Confidence 445556666666653333 99999999999999997666654322 4444443211111111111
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEeCCCCcccccccccccCCCCCC
Q 037935 245 AEYRRASRLYERLKNENKILVILDNIWKYLDLDTIGIPFGNDHEG 289 (1085)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~g 289 (1085)
......+...++..++||.|.....|+.....+.+.++.
T Consensus 84 ------~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~ 122 (398)
T COG1373 84 ------LRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL 122 (398)
T ss_pred ------HHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc
Confidence 111111212377899999999999998776666554443
No 183
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.63 E-value=0.023 Score=65.03 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=46.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCC-EEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFD-RVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 260 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 260 (1085)
..-+.|+|.+|+|||.|++++++....+ +.+ .++|++. .++..++...+.... ...+.+... .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~~--------~~~f~~~~~-~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEGK--------LNEFREKYR-K 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhccc--------HHHHHHHHH-h
Confidence 3468999999999999999999987643 222 4667654 345555555553210 122233332 3
Q ss_pred CcEEEEEeCCCC
Q 037935 261 NKILVILDNIWK 272 (1085)
Q Consensus 261 ~~~LlvlDdv~~ 272 (1085)
+.-+|++||++.
T Consensus 194 ~~dvLlIDDi~~ 205 (440)
T PRK14088 194 KVDVLLIDDVQF 205 (440)
T ss_pred cCCEEEEechhh
Confidence 445778888864
No 184
>PRK12377 putative replication protein; Provisional
Probab=96.62 E-value=0.012 Score=60.94 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 260 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 260 (1085)
+...+.++|.+|+|||.||.++.+....+ ...++++++. ++...+-...... . ....+.+.+ .
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~---~----~~~~~l~~l--~ 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG---Q----SGEKFLQEL--C 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc---c----hHHHHHHHh--c
Confidence 34688999999999999999999988754 2345666553 4445554443211 0 112344444 5
Q ss_pred CcEEEEEeCCCCc
Q 037935 261 NKILVILDNIWKY 273 (1085)
Q Consensus 261 ~~~LlvlDdv~~~ 273 (1085)
+-=|||+||+...
T Consensus 163 ~~dLLiIDDlg~~ 175 (248)
T PRK12377 163 KVDLLVLDEIGIQ 175 (248)
T ss_pred CCCEEEEcCCCCC
Confidence 6779999999543
No 185
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.61 E-value=0.018 Score=65.70 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=44.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 261 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 261 (1085)
...+.|+|..|+|||.|++++++....+..=..+++++. .++...+...+... ....+.+.+. +
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~--~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYR--S 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHH--h
Confidence 356889999999999999999998764411123566653 23344444444321 0222333332 2
Q ss_pred cEEEEEeCCCC
Q 037935 262 KILVILDNIWK 272 (1085)
Q Consensus 262 ~~LlvlDdv~~ 272 (1085)
.-+||+||++.
T Consensus 200 ~dlLiiDDi~~ 210 (405)
T TIGR00362 200 VDLLLIDDIQF 210 (405)
T ss_pred CCEEEEehhhh
Confidence 23677788864
No 186
>PRK05642 DNA replication initiation factor; Validated
Probab=96.61 E-value=0.06 Score=55.95 Aligned_cols=37 Identities=19% Similarity=0.481 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeC
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVS 221 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~ 221 (1085)
..+.|+|..|+|||.|++++++....++ ..++|++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeHH
Confidence 6789999999999999999998765432 346777764
No 187
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.61 E-value=0.019 Score=70.13 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=39.9
Q ss_pred ccccchHHHHHHHHHHhc------cCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALT------DVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+|.++.+++|++++. .....++.++|++|+||||+|+.+.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 458899999999998876 13456899999999999999999998765
No 188
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.56 E-value=0.0066 Score=59.33 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=64.3
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE 240 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 240 (1085)
.++||-+..++++.-...+++.+-+.|.||+|+||||-+..+++..-....=+.+.-.++|.+..+.-+-..|- .+.
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK-~FA-- 103 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIK-MFA-- 103 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHH-HHH--
Confidence 45789998888887777789999999999999999999998888765433334455455555444333322221 110
Q ss_pred CCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 241 LSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
+-.-.+-.++.-++|||+.++.
T Consensus 104 -----------Q~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 104 -----------QKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred -----------HhhccCCCCceeEEEeeccchh
Confidence 0000111366678899998875
No 189
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.56 E-value=0.011 Score=66.66 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=37.4
Q ss_pred ccccchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALT----D---------VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.++.|.+..++++.+++. . ...+-+.++|++|+|||++|+++++...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 456789998888877663 1 2345688999999999999999999765
No 190
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.52 E-value=0.015 Score=59.57 Aligned_cols=47 Identities=23% Similarity=0.343 Sum_probs=37.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQG 231 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 231 (1085)
-.++.|+|.+|+|||++|.++....... -..++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH
Confidence 4799999999999999999988776533 46789999975 66655544
No 191
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.52 E-value=0.021 Score=66.97 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=54.0
Q ss_pred CccccchHHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 160 YEAFESRVSTLKSIQNALT---D---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
-+++.|-+..++++.+.+. . ...+-+.++|++|+|||++|+.++...... | +.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--~-----~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--e-----eeccH----H
Confidence 3567788777666554332 1 123458899999999999999999876432 2 33321 1
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
.+.... .+. ....+..+++......+.+|++||++.
T Consensus 123 ~~~~~~---~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~ 158 (495)
T TIGR01241 123 DFVEMF---VGV------GASRVRDLFEQAKKNAPCIIFIDEIDA 158 (495)
T ss_pred HHHHHH---hcc------cHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 111110 010 112234444444456778999999865
No 192
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.49 E-value=0.018 Score=57.68 Aligned_cols=86 Identities=22% Similarity=0.301 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeC-CCcCHHHHHHHHHHHhCCCCC----CchHHHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVS-QTPDIKKIQGEIAEKLGLELS----DEAEYRRASRLYERL 257 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l 257 (1085)
+||.+||+.|+||||.+..++.....+ =..+..++.. ......+-++..++.++.+.. ..+..+.+.+..++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 689999999999999988888777654 3346777763 334566777888999987632 223344444455555
Q ss_pred HcCCcEEEEEeCC
Q 037935 258 KNENKILVILDNI 270 (1085)
Q Consensus 258 ~~~~~~LlvlDdv 270 (1085)
...+.=++++|-.
T Consensus 80 ~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 80 RKKGYDLVLIDTA 92 (196)
T ss_dssp HHTTSSEEEEEE-
T ss_pred hhcCCCEEEEecC
Confidence 4344457777754
No 193
>PRK08116 hypothetical protein; Validated
Probab=96.46 E-value=0.016 Score=61.37 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCc
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 262 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (1085)
..+.++|..|+|||.||.++++....+ -..++++++ .+++..+...+...... . ...+.+.+. +-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~------~~ll~~i~~~~~~~~~~-~----~~~~~~~l~-~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNF------PQLLNRIKSTYKSSGKE-D----ENEIIRSLV-NAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEH------HHHHHHHHHHHhccccc-c----HHHHHHHhc-CCC
Confidence 458899999999999999999988654 234566653 44555665554332111 1 223444443 333
Q ss_pred EEEEEeCCCC
Q 037935 263 ILVILDNIWK 272 (1085)
Q Consensus 263 ~LlvlDdv~~ 272 (1085)
||||||+..
T Consensus 181 -lLviDDlg~ 189 (268)
T PRK08116 181 -LLILDDLGA 189 (268)
T ss_pred -EEEEecccC
Confidence 899999953
No 194
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.046 Score=59.65 Aligned_cols=135 Identities=15% Similarity=0.150 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcc--------------------CCCEEEEEEeC---CCcCHHHHHHHHHHHhCC
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKK--------------------LFDRVVFSEVS---QTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~~---~~~~~~~~~~~i~~~l~~ 239 (1085)
.-+-++|+.|+||||+|+.+....-... |-| ..|+.-. +...++++- ++.+.+..
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~id~iR-~l~~~~~~ 100 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKVDQVR-ELVSFVVQ 100 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCHHHHH-HHHHHHhh
Confidence 4577999999999999999988765321 112 2222211 112222221 12222211
Q ss_pred CCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe---------------------cC
Q 037935 240 ELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI---------------------GN 296 (1085)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv---------------------~~ 296 (1085)
.. ..+++-++|+|+++... ..+.+...+-.-..++.+|+ .+
T Consensus 101 ~~----------------~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~ 164 (328)
T PRK05707 101 TA----------------QLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPL 164 (328)
T ss_pred cc----------------ccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCC
Confidence 10 02444455678887652 33333333322222233222 88
Q ss_pred CCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHH
Q 037935 297 LSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTV 340 (1085)
Q Consensus 297 l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 340 (1085)
++.+++.+.+...... ...+.+..++..++|.|..+..+
T Consensus 165 ~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 165 PSNEESLQWLQQALPE-----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred cCHHHHHHHHHHhccc-----CChHHHHHHHHHcCCCHHHHHHH
Confidence 8999999888766411 11344567889999999765443
No 195
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.45 E-value=0.16 Score=56.83 Aligned_cols=88 Identities=23% Similarity=0.226 Sum_probs=49.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCCCC----chHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSD----EAEYRRASRLYE 255 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~ 255 (1085)
...+|.++|..|+||||.+..++...+.+ .+ .++.|+.-. .....+-++...+..+.+... .+.........+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~ 176 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GF-KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVE 176 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CC-CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHH
Confidence 46899999999999999999988776643 23 455555421 222333334455555544221 122222233344
Q ss_pred HHHcCCcEEEEEeCC
Q 037935 256 RLKNENKILVILDNI 270 (1085)
Q Consensus 256 ~l~~~~~~LlvlDdv 270 (1085)
+++....=++|+|-.
T Consensus 177 ~~~~~~~DvViIDTa 191 (429)
T TIGR01425 177 KFKKENFDIIIVDTS 191 (429)
T ss_pred HHHhCCCCEEEEECC
Confidence 444334445777765
No 196
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.012 Score=65.88 Aligned_cols=93 Identities=20% Similarity=0.248 Sum_probs=64.8
Q ss_pred ccccchHHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHH
Q 037935 161 EAFESRVSTLKSIQNALT---D---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKK 228 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 228 (1085)
.++-|.|+.+.++.+.+. . ...+-|-+.|++|+|||.||++++.+..+. | +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch-----
Confidence 346688888887777654 1 234678899999999999999999998865 3 333331
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 229 IQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 229 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
+|+....+. ..+.+.++++...+.-++++++|+++..
T Consensus 258 ---eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ---EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ---hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 333322221 2334667777777899999999999764
No 197
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.43 E-value=0.0092 Score=66.80 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=58.3
Q ss_pred CccccchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCH
Q 037935 160 YEAFESRVSTLKSIQNALT----D---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDI 226 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 226 (1085)
-.++.|.+..++++.+.+. . ...+-+.++|++|+|||++|+++++..... | +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f-----i~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F-----IRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh----
Confidence 3457888888888877653 1 234678899999999999999999976532 3 22211
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 227 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 227 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
.. +...... . ....+..++.......+.+|++|+++.
T Consensus 213 s~----l~~k~~g----e-~~~~lr~lf~~A~~~~P~ILfIDEID~ 249 (398)
T PTZ00454 213 SE----FVQKYLG----E-GPRMVRDVFRLARENAPSIIFIDEVDS 249 (398)
T ss_pred HH----HHHHhcc----h-hHHHHHHHHHHHHhcCCeEEEEECHhh
Confidence 11 1111111 0 112234455555567889999999864
No 198
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.43 E-value=0.0046 Score=66.68 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=41.0
Q ss_pred cccchHHHHHHHHHHhcc------CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 162 AFESRVSTLKSIQNALTD------VNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.++|.++.++++++++.. ..-+++.++|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 689999999999998862 24588999999999999999999998765
No 199
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.41 E-value=0.019 Score=60.14 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=40.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccC----CCEEEEEEeCCCcCHHHHHHHHHHHhC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKL----FDRVVFSEVSQTPDIKKIQGEIAEKLG 238 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 238 (1085)
.-.++.|+|.+|+|||++|.+++........ -..++|++....++...+ .++++..+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~ 78 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFG 78 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhc
Confidence 3479999999999999999999765332211 257899998887776544 33444443
No 200
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0049 Score=72.88 Aligned_cols=138 Identities=13% Similarity=0.161 Sum_probs=82.9
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccC-----CCEEEEEEeCCCcCHHHHHHHHH
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKL-----FDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
-+.++|||++++++++.|....-.=-.++|.+|||||++|.-++...-...- ...++=. ++.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL-------------D~g 235 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL-------------DLG 235 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe-------------cHH
Confidence 3568999999999999998432223357899999999999988887643210 0011111 111
Q ss_pred HHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCccc--------ccccccccCCCCCCcEEEecCCCHHHHHHHH
Q 037935 235 EKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYLD--------LDTIGIPFGNDHEGYNFLIGNLSEEEAWRLF 306 (1085)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~--------~~~~~~~~~~~~~gs~ilv~~l~~~~~~~lf 306 (1085)
.-..+..-...-.+++..+.+.+.+.++.+|++|.+.+..- .+.-...-|.-..|.--.|..-+.+|..++|
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~i 315 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYI 315 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHh
Confidence 11111111223345677777888766799999999876411 1111111122335555555677788888888
Q ss_pred HHhc
Q 037935 307 KIMN 310 (1085)
Q Consensus 307 ~~~~ 310 (1085)
.+-+
T Consensus 316 EKD~ 319 (786)
T COG0542 316 EKDA 319 (786)
T ss_pred hhch
Confidence 7644
No 201
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.39 E-value=0.088 Score=56.87 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=30.9
Q ss_pred HHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 168 STLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 168 ~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+.+...+..+++. .+-++|+.|+||+++|..+.+..-
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL 51 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh
Confidence 3456667776666665 588999999999999999887654
No 202
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.042 Score=64.71 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=89.5
Q ss_pred cccchHHHHHH---HHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHH
Q 037935 162 AFESRVSTLKS---IQNALTD---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKI 229 (1085)
Q Consensus 162 ~~~gr~~~~~~---l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 229 (1085)
++.|-|+.+++ ++++|.+ .-.+=+-++|++|+|||-||++++-+..+. |++++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS------ 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS------ 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH------
Confidence 46677665554 5555652 124677899999999999999999987765 3555442
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCccc-----------------ccccccccCCCCCCcEE
Q 037935 230 QGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYLD-----------------LDTIGIPFGNDHEGYNF 292 (1085)
Q Consensus 230 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~-----------------~~~~~~~~~~~~~gs~i 292 (1085)
+..+-+... ...++..+....+...++++.+|+++.... ++++..-......+..|
T Consensus 379 --EFvE~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v 451 (774)
T KOG0731|consen 379 --EFVEMFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV 451 (774)
T ss_pred --HHHHHhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE
Confidence 112212111 022345555555567777887777654311 11111111111122323
Q ss_pred Ee--------------------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHH
Q 037935 293 LI--------------------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALT 338 (1085)
Q Consensus 293 lv--------------------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 338 (1085)
|| +.-+.....++|..|+.......+...+++ |+....|.+=|..
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHHH
Confidence 33 455566777888888854333344455666 8888888876543
No 203
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.35 E-value=0.0033 Score=57.94 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
||.|+|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999764
No 204
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.32 E-value=0.0014 Score=65.87 Aligned_cols=61 Identities=26% Similarity=0.463 Sum_probs=26.8
Q ss_pred hcCCCcceEEEecCC--cccC-CchhhhccccccEEeccCccccc---ccchhhhhccccCCEEeccCCC
Q 037935 537 FKGMKKLRVVDLTRV--RLFS-LPSSIGQLTKLRMLDLTDCLQLK---FIVPNILSSFTRLEELYMGSCS 600 (1085)
Q Consensus 537 ~~~l~~Lr~L~Ls~~--~i~~-lp~~i~~L~~L~~L~Ls~~~~l~---~lp~~~~~~L~~L~~L~L~~~~ 600 (1085)
|..+++|+.|.++.| ++.. ++-...++++|++|+++.| +++ ++++ +.++.+|..|++.+|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p--l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP--LKELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch--hhhhcchhhhhcccCC
Confidence 334455555555555 2221 3323334455555555555 433 2222 2444444455554444
No 205
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.018 Score=63.23 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 260 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 260 (1085)
-++++++|+.|+||||++..+......+.....+..++... .....+-++...+.++.+................+ .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l--~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL--R 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--c
Confidence 47999999999999999999998765332223566665422 23445566666777776553322222233344444 3
Q ss_pred CcEEEEEeCCC
Q 037935 261 NKILVILDNIW 271 (1085)
Q Consensus 261 ~~~LlvlDdv~ 271 (1085)
++-++++|..-
T Consensus 215 ~~DlVLIDTaG 225 (374)
T PRK14722 215 NKHMVLIDTIG 225 (374)
T ss_pred CCCEEEEcCCC
Confidence 34556688864
No 206
>PRK08181 transposase; Validated
Probab=96.27 E-value=0.11 Score=54.88 Aligned_cols=78 Identities=19% Similarity=0.188 Sum_probs=48.0
Q ss_pred HHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 037935 175 NALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLY 254 (1085)
Q Consensus 175 ~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 254 (1085)
+|+. ...-+.++|.+|+|||.||.++.+....+ ...+.|+++ .++...+...... . ......
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~~----~----~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARRE----L----QLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHhC----C----cHHHHH
Confidence 4554 33568999999999999999999876543 224555543 4455555433211 1 122334
Q ss_pred HHHHcCCcEEEEEeCCCC
Q 037935 255 ERLKNENKILVILDNIWK 272 (1085)
Q Consensus 255 ~~l~~~~~~LlvlDdv~~ 272 (1085)
+.+ .+.=|||+||+..
T Consensus 163 ~~l--~~~dLLIIDDlg~ 178 (269)
T PRK08181 163 AKL--DKFDLLILDDLAY 178 (269)
T ss_pred HHH--hcCCEEEEecccc
Confidence 444 3455999999854
No 207
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.26 E-value=0.039 Score=57.16 Aligned_cols=89 Identities=19% Similarity=0.273 Sum_probs=53.1
Q ss_pred HHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchH
Q 037935 169 TLKSIQNALTD--VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAE 246 (1085)
Q Consensus 169 ~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 246 (1085)
.+..+.++..+ .+...+.++|.+|+|||+||.++++....++ ..++++++ .++...+-..+.. ....
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it~------~~l~~~l~~~~~~--~~~~- 152 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIITV------ADIMSAMKDTFSN--SETS- 152 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEH------HHHHHHHHHHHhh--cccc-
Confidence 34444444432 2345788999999999999999999876542 34566643 4455555444421 1111
Q ss_pred HHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 247 YRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 247 ~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
...+.+.+. +.=+||+||+...
T Consensus 153 ---~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 153 ---EEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ---HHHHHHHhc--cCCEEEEeCCCCC
Confidence 223444452 4448888998654
No 208
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.25 E-value=0.014 Score=58.14 Aligned_cols=92 Identities=25% Similarity=0.350 Sum_probs=63.8
Q ss_pred ccccchHHHHHH---HHHHhcc------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHH
Q 037935 161 EAFESRVSTLKS---IQNALTD------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQG 231 (1085)
Q Consensus 161 ~~~~gr~~~~~~---l~~~l~~------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 231 (1085)
++++|.+..+.+ |+++|.+ -..+-|..+|++|.|||-+|+++.+..++- | +.+.. .+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vka-------t~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVKA-------TE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEech-------HH
Confidence 457888776544 5677763 356889999999999999999999988754 2 22211 12
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 232 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 232 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
-|-+..| +....+.++.+...+.-+|++.+|.++.
T Consensus 187 liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DA 221 (368)
T COG1223 187 LIGEHVG------DGARRIHELYERARKAAPCIVFIDELDA 221 (368)
T ss_pred HHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhh
Confidence 2222222 2244577788888788999999998754
No 209
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.091 Score=62.54 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=63.7
Q ss_pred ccccchHHHHHHHHHHhc---------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALT---------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQG 231 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~---------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 231 (1085)
..++|.+..++.+.+.+. +..+++...+|+.|||||-||++++...-... +..+-++.| +...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMS------Ey~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMS------EYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechH------HHHH
Confidence 457899999999988875 23567888999999999999999998763211 233333333 3222
Q ss_pred --HHHHHhCCCCCCchHHHHHHHHHHHHHcCCcE-EEEEeCCCCc
Q 037935 232 --EIAEKLGLELSDEAEYRRASRLYERLKNENKI-LVILDNIWKY 273 (1085)
Q Consensus 232 --~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-LlvlDdv~~~ 273 (1085)
.+-+-+|.++.-... +.-..+.+..+ .++| +|+||+|...
T Consensus 563 kHsVSrLIGaPPGYVGy-eeGG~LTEaVR-r~PySViLlDEIEKA 605 (786)
T COG0542 563 KHSVSRLIGAPPGYVGY-EEGGQLTEAVR-RKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHHhCCCCCCcee-ccccchhHhhh-cCCCeEEEechhhhc
Confidence 222333443321111 11234555565 6767 8888999764
No 210
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.19 E-value=0.022 Score=59.38 Aligned_cols=90 Identities=23% Similarity=0.381 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCC-CEEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CCCchHH----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLF-DRVVFSEVSQTP-DIKKIQGEIAEKLGLE-------LSDEAEY---- 247 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~---- 247 (1085)
.-..++|+|.+|+|||||++.+++..+.+ | +.++++-+.+.. .+.++.+++...-... ..+....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 44688999999999999999999988754 4 456667776544 4666766665432111 1111111
Q ss_pred --HHHHHHHHHHH-c-CCcEEEEEeCCCC
Q 037935 248 --RRASRLYERLK-N-ENKILVILDNIWK 272 (1085)
Q Consensus 248 --~~~~~~~~~l~-~-~~~~LlvlDdv~~ 272 (1085)
.....+.++++ + ++.+|+++||+..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 11223444444 3 8999999999743
No 211
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.00056 Score=68.45 Aligned_cols=79 Identities=27% Similarity=0.361 Sum_probs=36.5
Q ss_pred cceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhh
Q 037935 542 KLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELM 621 (1085)
Q Consensus 542 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 621 (1085)
+.+.|++-|+.++.+. -+.+++.|++|.||-| +|+++.+ +..+++|++|+|+.|.|. .-..+..|.
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvN-kIssL~p--l~rCtrLkElYLRkN~I~----------sldEL~YLk 85 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVN-KISSLAP--LQRCTRLKELYLRKNCIE----------SLDELEYLK 85 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeecc-ccccchh--HHHHHHHHHHHHHhcccc----------cHHHHHHHh
Confidence 3444444444444432 2234445555555555 4554443 445555555555555442 122334445
Q ss_pred cCCCCcEEEEEec
Q 037935 622 HLQRLTTLEIDVE 634 (1085)
Q Consensus 622 ~L~~L~~L~l~~~ 634 (1085)
++++|+.|-|..|
T Consensus 86 nlpsLr~LWL~EN 98 (388)
T KOG2123|consen 86 NLPSLRTLWLDEN 98 (388)
T ss_pred cCchhhhHhhccC
Confidence 5555555555443
No 212
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.13 E-value=0.27 Score=55.68 Aligned_cols=87 Identities=24% Similarity=0.329 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCCCC----chHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSD----EAEYRRASRLYE 255 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~ 255 (1085)
...+|.++|..|+||||.|..++.....++ + .++-|++.. .....+.++.++++++.+... .+....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467999999999999999999998776442 3 344454432 122345566777777665322 122233334444
Q ss_pred HHHcCCcEEEEEeCCC
Q 037935 256 RLKNENKILVILDNIW 271 (1085)
Q Consensus 256 ~l~~~~~~LlvlDdv~ 271 (1085)
... .. =+||+|..-
T Consensus 172 ~~~-~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFK-KA-DVIIVDTAG 185 (437)
T ss_pred Hhh-cC-CEEEEECCC
Confidence 443 33 568888763
No 213
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.027 Score=59.07 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 260 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 260 (1085)
+..-+.++|.+|+|||.||.++.++.. +..+ .+.++++ .++..++....... . ....+.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~~----~---~~~~l~~~l--~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDEG----R---LEEKLLREL--K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhcC----c---hHHHHHHHh--h
Confidence 667899999999999999999999988 4333 3555554 45666666555431 1 112233323 3
Q ss_pred CcEEEEEeCCCCc
Q 037935 261 NKILVILDNIWKY 273 (1085)
Q Consensus 261 ~~~LlvlDdv~~~ 273 (1085)
+-=||||||+-..
T Consensus 167 ~~dlLIiDDlG~~ 179 (254)
T COG1484 167 KVDLLIIDDIGYE 179 (254)
T ss_pred cCCEEEEecccCc
Confidence 4458999998653
No 214
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.11 E-value=0.029 Score=60.09 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=49.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-cCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 259 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 259 (1085)
..++++|+|++|+||||++..+......+..-..+..|+.... ......+....+.++.+.........+....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 4579999999999999999998887654311124555665321 12233334444555554432222233444444442
Q ss_pred CCcEEEEEeC
Q 037935 260 ENKILVILDN 269 (1085)
Q Consensus 260 ~~~~LlvlDd 269 (1085)
+ .=+|++|.
T Consensus 272 ~-~d~vliDt 280 (282)
T TIGR03499 272 D-KDLILIDT 280 (282)
T ss_pred C-CCEEEEeC
Confidence 3 34677775
No 215
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.018 Score=63.46 Aligned_cols=92 Identities=24% Similarity=0.273 Sum_probs=61.7
Q ss_pred cccchH---HHHHHHHHHhccC--------C-ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHH
Q 037935 162 AFESRV---STLKSIQNALTDV--------N-VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKI 229 (1085)
Q Consensus 162 ~~~gr~---~~~~~l~~~l~~~--------~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 229 (1085)
++-|-| .++++|+++|.+. + .+-|-++|++|.|||-||++|+-+..+. | |.....+|+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFd---- 374 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFD---- 374 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchh----
Confidence 345655 4677888888742 2 3678899999999999999999887764 2 222222222
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 230 QGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 230 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
+++--. ...++..++...++.-+|+|.+|.++..
T Consensus 375 --Em~VGv--------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 375 --EMFVGV--------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred --hhhhcc--------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 111111 1344666777777789999999998754
No 216
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.07 E-value=0.0038 Score=62.79 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=35.1
Q ss_pred cceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc--hhhhccccccEEe
Q 037935 493 KCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP--SSIGQLTKLRMLD 570 (1085)
Q Consensus 493 ~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~ 570 (1085)
.+.++++.+..++.+.....+++|+.|.++.|..-....++.- ..++++|++|++++|+|..+. ..+..+.+|..|+
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 3444445554444444444455555555555521001111111 223355555555555544311 1234445555555
Q ss_pred ccCc
Q 037935 571 LTDC 574 (1085)
Q Consensus 571 Ls~~ 574 (1085)
+.+|
T Consensus 123 l~n~ 126 (260)
T KOG2739|consen 123 LFNC 126 (260)
T ss_pred cccC
Confidence 5555
No 217
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.25 Score=49.18 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=57.4
Q ss_pred cccchHHHHHHHHHHhc-------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHH
Q 037935 162 AFESRVSTLKSIQNALT-------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKK 228 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 228 (1085)
++-|.|..++++.+..+ -+..+-|.++|++|+|||.||++|+++.... | +.|... +
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~--f-----irvvgs----e 224 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA--F-----IRVVGS----E 224 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh--e-----eeeccH----H
Confidence 45577777777776654 1345778899999999999999999987643 4 333221 1
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 229 IQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 229 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
+ .-+.+|... ..+..+++-.+.+.+-+|.+|.|+..
T Consensus 225 f---vqkylgegp------rmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 225 F---VQKYLGEGP------RMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred H---HHHHhccCc------HHHHHHHHHHhccCCcEEEeehhhhH
Confidence 1 122333321 11233444444678889999988643
No 218
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.3 Score=52.74 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=29.5
Q ss_pred HHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 169 TLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 169 ~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..+++...+..+++ ..+-+.|+.|+||+++|+.+....-
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 34556666655554 4688999999999999999887653
No 219
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.02 E-value=0.078 Score=60.53 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=45.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 261 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 261 (1085)
..-+.|+|+.|+|||+|++++.+..... -..+++++. ..+...+...+... ....+.+.. ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~--~~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFY--RN 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHc--cc
Confidence 3568899999999999999999987643 223455543 34444555554321 112222222 33
Q ss_pred cEEEEEeCCCCc
Q 037935 262 KILVILDNIWKY 273 (1085)
Q Consensus 262 ~~LlvlDdv~~~ 273 (1085)
.-+|++||+...
T Consensus 203 ~dvLiIDDiq~l 214 (445)
T PRK12422 203 VDALFIEDIEVF 214 (445)
T ss_pred CCEEEEcchhhh
Confidence 447888998654
No 220
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.01 E-value=0.044 Score=57.63 Aligned_cols=88 Identities=28% Similarity=0.399 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhcc----CCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCC-------------ch
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKK----LFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD-------------EA 245 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------~~ 245 (1085)
.++=|+|.+|+|||.|+-+++-...... .=..++|++-...|+.+.+. +|++..+.+..+ ..
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHH
Confidence 6899999999999999988876544321 12469999999999988875 566665432210 01
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEeCCC
Q 037935 246 EYRRASRLYERLKNENKILVILDNIW 271 (1085)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~LlvlDdv~ 271 (1085)
-...+..+...+.+.+--|||+|.+-
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHhhccccceEEEEecchH
Confidence 11222333333434666788889874
No 221
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.00 E-value=0.07 Score=62.11 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
..+.|+|..|+|||.|++++++.......--.+++++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 45899999999999999999998754211123556554
No 222
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.043 Score=62.32 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=49.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 259 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 259 (1085)
..++|+|+|.+|+||||++..+......+.....+..++... .......++...+.++...........+....+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh--
Confidence 358999999999999999998887654332223455555422 11222333333444444333222223344444554
Q ss_pred CCcEEEEEeCCC
Q 037935 260 ENKILVILDNIW 271 (1085)
Q Consensus 260 ~~~~LlvlDdv~ 271 (1085)
.+.=+||+|..-
T Consensus 427 ~~~DLVLIDTaG 438 (559)
T PRK12727 427 RDYKLVLIDTAG 438 (559)
T ss_pred ccCCEEEecCCC
Confidence 234577788753
No 223
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.96 E-value=0.027 Score=55.90 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEE
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFS 218 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv 218 (1085)
...+|.++|+.|+||||+|+.++...... +..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 44699999999999999999999988643 5555554
No 224
>PRK06696 uridine kinase; Validated
Probab=95.94 E-value=0.012 Score=60.75 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHhc---cCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 165 SRVSTLKSIQNALT---DVNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 165 gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.|+..+++|.+.+. .+...+|+|.|.+|+||||+|+.+......
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46777788887774 356789999999999999999999998754
No 225
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.14 Score=56.24 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=35.6
Q ss_pred cccc-hHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 162 AFES-RVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 162 ~~~g-r~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.++| -+...+.+...+..+++. ..-++|+.|+||||+|+.+.+..-
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 3556 666777777777766654 558999999999999999988754
No 226
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.93 E-value=0.043 Score=68.01 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=38.4
Q ss_pred ccccchHHHHHHHHHHhc---------cCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALT---------DVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~---------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|.+..++.+.+.+. +....++.++|+.|+|||.+|+.+....-
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 458899999999888774 12346889999999999999999988763
No 227
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.93 E-value=0.062 Score=58.59 Aligned_cols=58 Identities=22% Similarity=0.274 Sum_probs=43.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhh---cc-CCCEEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQARE---KK-LFDRVVFSEVSQTPDIKKIQGEIAEKLGLE 240 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 240 (1085)
-+++-|+|.+|+|||+|+.+++-.... .+ .-..++||+....|.+.++.+ +++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 478889999999999999888654332 11 124689999999999888755 56666654
No 228
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.93 E-value=0.016 Score=66.41 Aligned_cols=75 Identities=23% Similarity=0.280 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 260 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 260 (1085)
.-++.-++|++|.||||||.-+++... | .++=|++|+..+...+-..|...+....... ..+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ads 386 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------ADS 386 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc-------------cCC
Confidence 458999999999999999999998765 3 3777899998888888777776554321110 037
Q ss_pred CcEEEEEeCCCCc
Q 037935 261 NKILVILDNIWKY 273 (1085)
Q Consensus 261 ~~~LlvlDdv~~~ 273 (1085)
++.-||+|.++..
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 8888999998754
No 229
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.92 E-value=0.03 Score=60.14 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCC------CchHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS------DEAEYRRASRLY 254 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~ 254 (1085)
.-+++-|+|++|+||||||.++....... =..++||+....++.. .+++++.+.. .....+.+..+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34799999999999999999887766533 2457899887766653 3555554321 112222233332
Q ss_pred HHHHcCCcEEEEEeCCCCc
Q 037935 255 ERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 255 ~~l~~~~~~LlvlDdv~~~ 273 (1085)
..++++..-++|+|.|...
T Consensus 127 ~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHhhccCCcEEEEcchhhh
Confidence 3333566779999998643
No 230
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.92 E-value=0.088 Score=65.05 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=55.3
Q ss_pred ccccchHHHHHHHHHHhc-------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 161 EAFESRVSTLKSIQNALT-------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
..+.|.+..++.+.+.+. -...+-+.++|++|+|||++|+++++..... | +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEehH----
Confidence 446788877777766543 0233568899999999999999999987532 3 223211
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
+++... ... ....+..+++......+.+|++|+++.
T Consensus 522 ----~l~~~~----vGe-se~~i~~~f~~A~~~~p~iifiDEid~ 557 (733)
T TIGR01243 522 ----EILSKW----VGE-SEKAIREIFRKARQAAPAIIFFDEIDA 557 (733)
T ss_pred ----HHhhcc----cCc-HHHHHHHHHHHHHhcCCEEEEEEChhh
Confidence 111111 111 122344555555556778888888754
No 231
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.91 E-value=0.046 Score=56.81 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=26.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
+...+++|.|..|.|||||++.+.......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567899999999999999999999877654
No 232
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.90 E-value=0.4 Score=59.92 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTD---------VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|.+..++.+...+.. ....++.++|+.|+|||++|+.+++...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999988888877651 1235788999999999999999998653
No 233
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.90 E-value=0.048 Score=58.96 Aligned_cols=58 Identities=28% Similarity=0.359 Sum_probs=43.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhc----cCCCEEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREK----KLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE 240 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 240 (1085)
-+++-|+|.+|+|||+++.+++-..... +.=..++||+....|+++++. ++++.++.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 4788999999999999998876543321 112468999999999988875 456766654
No 234
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.83 E-value=0.01 Score=69.87 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=40.5
Q ss_pred CCCccccchHHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 158 KGYEAFESRVSTLKSIQNALTD-----VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 158 ~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...++++|-++.++++..++.. ...+++.|+|++|+||||+++.++....
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3446688999989999888863 2335799999999999999999998654
No 235
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.82 E-value=0.016 Score=57.17 Aligned_cols=75 Identities=32% Similarity=0.409 Sum_probs=45.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 260 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 260 (1085)
+..-+.++|..|+|||.||.++.+....++ + .+.|+++ .+++..+-. ...... .....+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~-~v~f~~~------~~L~~~l~~----~~~~~~----~~~~~~~l~-- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG-Y-SVLFITA------SDLLDELKQ----SRSDGS----YEELLKRLK-- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEH------HHHHHHHHC----CHCCTT----HCHHHHHHH--
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC-c-ceeEeec------Cceeccccc----cccccc----hhhhcCccc--
Confidence 346799999999999999999998776532 3 3566654 344444432 211111 223445553
Q ss_pred CcEEEEEeCCCCc
Q 037935 261 NKILVILDNIWKY 273 (1085)
Q Consensus 261 ~~~LlvlDdv~~~ 273 (1085)
+-=|||+||+-..
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 4457789998654
No 236
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.81 E-value=0.045 Score=56.92 Aligned_cols=49 Identities=24% Similarity=0.307 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhcc----CCCEEEEEEeCCCcCHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKK----LFDRVVFSEVSQTPDIKKIQ 230 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~ 230 (1085)
-.++.|+|.+|+|||++|.++.......+ .=..++|++....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 47999999999999999999877654221 01468899988777765543
No 237
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.08 Score=57.75 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=49.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-cCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 259 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 259 (1085)
+.++|+++|.+|+||||++..++.....++ + .+..++.... ....+-++..++.++.+.....+...+....+.+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G-k-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-K-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC-C-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999999988765332 2 3445554321 122333344445555553322222333344444432
Q ss_pred -CCcEEEEEeCCC
Q 037935 260 -ENKILVILDNIW 271 (1085)
Q Consensus 260 -~~~~LlvlDdv~ 271 (1085)
.+.=++++|-.-
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 123466777653
No 238
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.062 Score=62.26 Aligned_cols=92 Identities=21% Similarity=0.290 Sum_probs=64.7
Q ss_pred ccccchHHHHHHHHHHhc---------cC---CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHH
Q 037935 161 EAFESRVSTLKSIQNALT---------DV---NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKK 228 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~---------~~---~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 228 (1085)
+++-|-++.+.+|.+-+. .. +.+-|-+||++|.|||-+|++|+.+..- .|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH-----
Confidence 346688888888888654 22 2356788999999999999999998763 34666442
Q ss_pred HHHHHHH-HhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 229 IQGEIAE-KLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 229 ~~~~i~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
+++. .+|. ..+.+.+++++.++.++|.|.||++++.
T Consensus 740 ---ELLNMYVGq------SE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ---ELLNMYVGQ------SEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ---HHHHHHhcc------hHHHHHHHHHHhhccCCeEEEecccccc
Confidence 2222 2221 1334667778888899999999998654
No 239
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.75 E-value=0.039 Score=59.19 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=26.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
.....+.|||++|+|||.+|++++++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 345799999999999999999999998754
No 240
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.74 E-value=0.059 Score=55.95 Aligned_cols=45 Identities=22% Similarity=0.387 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKI 229 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 229 (1085)
-.++.|+|.+|+|||++|.+++...... -..++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 4799999999999999999998876533 3678999987 5555444
No 241
>PRK06921 hypothetical protein; Provisional
Probab=95.74 E-value=0.046 Score=57.80 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 260 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 260 (1085)
....+.++|..|+|||.||.++++....+.. ..+++++.. +++..+...+ .......+.+ .
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g-~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~~--~ 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKG-VPVLYFPFV------EGFGDLKDDF----------DLLEAKLNRM--K 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcC-ceEEEEEHH------HHHHHHHHHH----------HHHHHHHHHh--c
Confidence 4567899999999999999999998764312 345666642 3333332222 1122233444 3
Q ss_pred CcEEEEEeCCC
Q 037935 261 NKILVILDNIW 271 (1085)
Q Consensus 261 ~~~LlvlDdv~ 271 (1085)
+-=|||+||+.
T Consensus 177 ~~dlLiIDDl~ 187 (266)
T PRK06921 177 KVEVLFIDDLF 187 (266)
T ss_pred CCCEEEEeccc
Confidence 45699999993
No 242
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.73 E-value=0.037 Score=59.47 Aligned_cols=84 Identities=24% Similarity=0.291 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCC------CchHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS------DEAEYRRASRLYE 255 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~ 255 (1085)
-+++-|+|++|+||||||.+++...... -..++||+....+++. .+++++.+.+ ..+..+....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4789999999999999999987766533 3468899988777653 3444544321 1122222222222
Q ss_pred HHHcCCcEEEEEeCCCC
Q 037935 256 RLKNENKILVILDNIWK 272 (1085)
Q Consensus 256 ~l~~~~~~LlvlDdv~~ 272 (1085)
.+.++.--++|+|-|..
T Consensus 128 li~s~~~~lIVIDSvaa 144 (325)
T cd00983 128 LVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHhccCCCEEEEcchHh
Confidence 23356677999998754
No 243
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.72 E-value=0.014 Score=66.44 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=41.0
Q ss_pred cccchHHHHHHHHHHhc------cCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 162 AFESRVSTLKSIQNALT------DVNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
+++|.++.+++|++.|. +..-+++.++|++|+||||||+.+.+-.+.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 47899999999999883 455689999999999999999999997753
No 244
>PRK09354 recA recombinase A; Provisional
Probab=95.72 E-value=0.044 Score=59.44 Aligned_cols=85 Identities=20% Similarity=0.272 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCC------CchHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS------DEAEYRRASRLYE 255 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~ 255 (1085)
-+++-|+|++|+||||||.++....... =..++||+....++.. .+++++.+.+ .....+.+..+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4799999999999999999988766533 3568999998877763 4555554321 1122222233333
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 037935 256 RLKNENKILVILDNIWKY 273 (1085)
Q Consensus 256 ~l~~~~~~LlvlDdv~~~ 273 (1085)
.++++..-+||+|-|...
T Consensus 133 li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HhhcCCCCEEEEeChhhh
Confidence 334566779999998543
No 245
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.71 E-value=0.069 Score=52.16 Aligned_cols=40 Identities=33% Similarity=0.485 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcC
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPD 225 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 225 (1085)
++.|+|.+|+||||+++.+......+ -..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 46899999999999999998877542 35678888765543
No 246
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.043 Score=61.71 Aligned_cols=72 Identities=26% Similarity=0.325 Sum_probs=50.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 261 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 261 (1085)
..-|-+||++|+|||-||++|+++.+.. | ++|..+ +++...-+ + ....+..++++.+...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N--F-----isVKGP--------ELlNkYVG----E-SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN--F-----ISVKGP--------ELLNKYVG----E-SERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc--e-----EeecCH--------HHHHHHhh----h-HHHHHHHHHHHhhcCC
Confidence 4567899999999999999999998754 4 555442 22222211 1 1233556777777899
Q ss_pred cEEEEEeCCCCc
Q 037935 262 KILVILDNIWKY 273 (1085)
Q Consensus 262 ~~LlvlDdv~~~ 273 (1085)
+|+|.||.++..
T Consensus 605 PCVIFFDEiDaL 616 (802)
T KOG0733|consen 605 PCVIFFDEIDAL 616 (802)
T ss_pred CeEEEecchhhc
Confidence 999999998643
No 247
>PTZ00494 tuzin-like protein; Provisional
Probab=95.68 E-value=0.6 Score=51.13 Aligned_cols=144 Identities=13% Similarity=0.145 Sum_probs=86.3
Q ss_pred CCCccccchHHHHHHHHHHhc---cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHH
Q 037935 158 KGYEAFESRVSTLKSIQNALT---DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 158 ~~~~~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
.....++.|+.+-..+...|. ..+.+++.+.|..|+||++|.+......... .++|+|... ++-++.+.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~p-----aV~VDVRg~---EDtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVA-----LVHVDVGGT---EDTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCC-----eEEEEecCC---cchHHHHH
Confidence 345668899887666655554 4578999999999999999999888776543 567888654 34567788
Q ss_pred HHhCCCCCCc--hHHHHHHHHHHHHH---cCCcEEEEEeCCCCccccccc---ccccCCCCCCcEEEe------------
Q 037935 235 EKLGLELSDE--AEYRRASRLYERLK---NENKILVILDNIWKYLDLDTI---GIPFGNDHEGYNFLI------------ 294 (1085)
Q Consensus 235 ~~l~~~~~~~--~~~~~~~~~~~~l~---~~~~~LlvlDdv~~~~~~~~~---~~~~~~~~~gs~ilv------------ 294 (1085)
+.++.+.-+. +-.+-+.+....-+ .++.=+||+- +.+...+..+ ...+.....-+.|++
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlk-LREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMR-LREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEE-eccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhc
Confidence 8888765332 22222332222222 3555555553 1111111111 012233334445554
Q ss_pred ----------cCCCHHHHHHHHHHhc
Q 037935 295 ----------GNLSEEEAWRLFKIMN 310 (1085)
Q Consensus 295 ----------~~l~~~~~~~lf~~~~ 310 (1085)
.+++..+|.+..++..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 8888898888877765
No 248
>PRK10867 signal recognition particle protein; Provisional
Probab=95.67 E-value=0.86 Score=51.54 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=50.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCH--HHHHHHHHHHhCCCCC----CchHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDI--KKIQGEIAEKLGLELS----DEAEYRRASRLY 254 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~----~~~~~~~~~~~~ 254 (1085)
...+|.++|.+|+||||.+..++.....+..+ .++.|++- .+.. .+-++..++..+.+.. ..+.........
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~-kV~lV~~D-~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKK-KVLLVAAD-VYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCC-cEEEEEcc-ccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 46899999999999999998888766543112 34445442 2322 3344555666665421 112233333344
Q ss_pred HHHHcCCcEEEEEeCCC
Q 037935 255 ERLKNENKILVILDNIW 271 (1085)
Q Consensus 255 ~~l~~~~~~LlvlDdv~ 271 (1085)
+.......=++|+|-.-
T Consensus 177 ~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 177 EEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 44432333377788654
No 249
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.23 Score=55.08 Aligned_cols=95 Identities=26% Similarity=0.411 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 260 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 260 (1085)
.+..+.+.|++|+|||+||..++.... |..+=-++- ++. +| ..+......+...++...+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSp------e~m-------iG--~sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISP------EDM-------IG--LSESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeCh------HHc-------cC--ccHHHHHHHHHHHHHHhhcC
Confidence 456677889999999999999988754 654332211 110 01 11112222233444444357
Q ss_pred CcEEEEEeCCCCcccccccccccCC-------------CCCCcEEEe
Q 037935 261 NKILVILDNIWKYLDLDTIGIPFGN-------------DHEGYNFLI 294 (1085)
Q Consensus 261 ~~~LlvlDdv~~~~~~~~~~~~~~~-------------~~~gs~ilv 294 (1085)
.--.||+||+....+|-.++..|.+ ...|.|.+|
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli 644 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLI 644 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEE
Confidence 7789999999988888777654433 235777777
No 250
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.62 E-value=0.29 Score=48.86 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=64.2
Q ss_pred CCccccchHHHHHHHHHH----hccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHH
Q 037935 159 GYEAFESRVSTLKSIQNA----LTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
+-..++|-|...+.+++- +.....--|-+||.-|+||+.|++++.+....+ .-. -|.|.+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k------------ 121 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDK------------ 121 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcH------------
Confidence 334578888887777653 334455678899999999999999999988755 222 233332
Q ss_pred HHhCCCCCCchHHHHHHHHHHHHH-cCCcEEEEEeCCCCc---cccccccccc
Q 037935 235 EKLGLELSDEAEYRRASRLYERLK-NENKILVILDNIWKY---LDLDTIGIPF 283 (1085)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~---~~~~~~~~~~ 283 (1085)
.+...+-.+.+.++ ...||+|..||..-+ +....++..+
T Consensus 122 ----------~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~L 164 (287)
T COG2607 122 ----------EDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSAL 164 (287)
T ss_pred ----------HHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHh
Confidence 12222344445554 478999999998644 2344454444
No 251
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.59 E-value=0.0045 Score=36.76 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=8.9
Q ss_pred ccEEeccCcccccccchh
Q 037935 566 LRMLDLTDCLQLKFIVPN 583 (1085)
Q Consensus 566 L~~L~Ls~~~~l~~lp~~ 583 (1085)
|++||+++| .++.+|++
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 455555555 55555544
No 252
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.59 E-value=0.39 Score=52.09 Aligned_cols=156 Identities=11% Similarity=0.081 Sum_probs=78.8
Q ss_pred HHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC------C-
Q 037935 169 TLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL------E- 240 (1085)
Q Consensus 169 ~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~------~- 240 (1085)
..+.+...+..+++ ..+-+.|+.|+||+++|+.+....-....... ..+..-...+.+...-.. +
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 34556666665554 46668999999999999999887643211100 000000111111000000 0
Q ss_pred CCCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEE---------------------
Q 037935 241 LSDEAEYRRASRLYERLK----NENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFL--------------------- 293 (1085)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~il--------------------- 293 (1085)
....-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+-.-..+..++
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 000011222333333332 3666678888887652 2333322222211222222
Q ss_pred ecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHH
Q 037935 294 IGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIAL 337 (1085)
Q Consensus 294 v~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 337 (1085)
+.++++++..+.+....... ...+...+..++|.|+.+
T Consensus 163 ~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 28899999988887764211 223567788899999644
No 253
>PRK06526 transposase; Provisional
Probab=95.54 E-value=0.035 Score=58.13 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=43.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 261 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 261 (1085)
..-+.++|++|+|||+||..+......++ +. +.|+ +..++...+...... . ........+ .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~~-v~f~------t~~~l~~~l~~~~~~----~----~~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-HR-VLFA------TAAQWVARLAAAHHA----G----RLQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-Cc-hhhh------hHHHHHHHHHHHHhc----C----cHHHHHHHh--cc
Confidence 45689999999999999999988765432 32 3443 334455554432211 0 112223333 34
Q ss_pred cEEEEEeCCCC
Q 037935 262 KILVILDNIWK 272 (1085)
Q Consensus 262 ~~LlvlDdv~~ 272 (1085)
.-+||+||+..
T Consensus 160 ~dlLIIDD~g~ 170 (254)
T PRK06526 160 YPLLIVDEVGY 170 (254)
T ss_pred CCEEEEccccc
Confidence 56899999864
No 254
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.11 Score=57.87 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhcc--CCCEEEEEEeCCC-cCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKK--LFDRVVFSEVSQT-PDIKKIQGEIAEKLGLELSDEAEYRRASRLYERL 257 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l 257 (1085)
..++|.++|..|+||||.+..++....... +=..+..+++..- .....-++..++.++.+.........+......+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999998887665321 1124555555431 1223336666666776544333333333333444
Q ss_pred HcCCcEEEEEeCCCC
Q 037935 258 KNENKILVILDNIWK 272 (1085)
Q Consensus 258 ~~~~~~LlvlDdv~~ 272 (1085)
.+.-++++|....
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 4456888888743
No 255
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.08 Score=57.54 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 259 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 259 (1085)
+.++++++|+.|+||||++..+......++ ..+.+|+... ......-++..++.++.+.....+...+....+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 458999999999999999999887664432 3566777642 2233445666677676654322222334444444531
Q ss_pred -CCcEEEEEeCCC
Q 037935 260 -ENKILVILDNIW 271 (1085)
Q Consensus 260 -~~~~LlvlDdv~ 271 (1085)
+..=+|++|-.-
T Consensus 283 ~~~~D~VLIDTAG 295 (407)
T PRK12726 283 VNCVDHILIDTVG 295 (407)
T ss_pred cCCCCEEEEECCC
Confidence 344577778764
No 256
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.14 Score=49.20 Aligned_cols=114 Identities=21% Similarity=0.147 Sum_probs=61.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc----------------CHHHHHHHHHHHhCCCCC---
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP----------------DIKKIQGEIAEKLGLELS--- 242 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~----------------~~~~~~~~i~~~l~~~~~--- 242 (1085)
...+.|.|++|+|||||++.++.+. + | +++||.+. +.+++.+-|-..--..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~--~--l----~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~ 75 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD--K--L----RFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYH 75 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc--C--e----EEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEc
Confidence 4678999999999999999999976 1 2 33443321 345555544332211110
Q ss_pred CchHHHHHHHHHHHHHcCCcEEEEEeCCCCcccccccccccCCCCCCcEEEecCCCHHHHHHHHHHhc
Q 037935 243 DEAEYRRASRLYERLKNENKILVILDNIWKYLDLDTIGIPFGNDHEGYNFLIGNLSEEEAWRLFKIMN 310 (1085)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~gs~ilv~~l~~~~~~~lf~~~~ 310 (1085)
...-......+.+.+..++.+++.+|= .. -.+++..+| +.-.|.+.|-+.++..+-+..+.
T Consensus 76 gnyYGT~~~~ve~~~~~G~~vildId~--qG--a~qvk~~~p---~~v~IFi~pPs~eeL~~RL~~Rg 136 (191)
T COG0194 76 GNYYGTSREPVEQALAEGKDVILDIDV--QG--ALQVKKKMP---NAVSIFILPPSLEELERRLKGRG 136 (191)
T ss_pred CCcccCcHHHHHHHHhcCCeEEEEEeh--HH--HHHHHHhCC---CeEEEEEcCCCHHHHHHHHHccC
Confidence 000001123344445568888888872 11 112333333 34445557777777766665554
No 257
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.45 E-value=0.022 Score=52.83 Aligned_cols=32 Identities=41% Similarity=0.511 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCE
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDR 214 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~ 214 (1085)
.--|.|.|++|+||||+++.+.+..+.++ |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG-YKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC-cee
Confidence 34689999999999999999999887653 543
No 258
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.45 E-value=0.3 Score=49.76 Aligned_cols=212 Identities=15% Similarity=0.163 Sum_probs=108.2
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhh----ccCCCEEEEEEeCCC--------------
Q 037935 162 AFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQARE----KKLFDRVVFSEVSQT-------------- 223 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~-------------- 223 (1085)
.+.++++....+......+..+..-++|++|.||-|.+..+.++.-. +-.-+...|.+-+..
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35667776776766655677899999999999999999888877532 112334555433332
Q ss_pred -------cCHHHHHHHHHHHhCCCCCCc---------------hH-HHHHH-HHH---HHHHcCCcEEEEEeCCCCcccc
Q 037935 224 -------PDIKKIQGEIAEKLGLELSDE---------------AE-YRRAS-RLY---ERLKNENKILVILDNIWKYLDL 276 (1085)
Q Consensus 224 -------~~~~~~~~~i~~~l~~~~~~~---------------~~-~~~~~-~~~---~~l~~~~~~LlvlDdv~~~~~~ 276 (1085)
..-+.+.++++++.+....-+ ++ ...++ .++ ++..++-|.+++-+.....
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~Sri--- 170 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRI--- 170 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccc---
Confidence 123445555555554321100 00 00011 111 1111233333333332111
Q ss_pred cccccccCCCCCCcEEEecCCCHHHHHHHHHHhcC-CCCCCCCchHHHHHHHHHhCCchHHHHHHHHHHh--cC------
Q 037935 277 DTIGIPFGNDHEGYNFLIGNLSEEEAWRLFKIMNG-DDVENCKFKPTAINVAQACGGLPIALTTVARALR--NK------ 347 (1085)
Q Consensus 277 ~~~~~~~~~~~~gs~ilv~~l~~~~~~~lf~~~~~-~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~--~~------ 347 (1085)
..+... .---|-|...+++|.-..++..+. ++..-| ++++.+|+++++|.---...+--.++ +.
T Consensus 171 ---IepIrS--RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~ 243 (351)
T KOG2035|consen 171 ---IEPIRS--RCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANS 243 (351)
T ss_pred ---hhHHhh--heeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccC
Confidence 011100 000111267788888888888773 222222 78999999999886433333333332 11
Q ss_pred ---CHHHHHHHHHHhcCCCCCCCCCCcccchhhHHHHHhcC
Q 037935 348 ---SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYL 385 (1085)
Q Consensus 348 ---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L 385 (1085)
..-+|+-++.++......+ +.+..+..+-..=|+-|
T Consensus 244 ~~i~~~dWe~~i~e~a~~i~~e--Qs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 244 QVIPKPDWEIYIQEIARVILKE--QSPAKLLEVRGRLYELL 282 (351)
T ss_pred CCCCCccHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHH
Confidence 3458988887654433221 12334455545555544
No 259
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.59 Score=50.05 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
.-+-|..+|++|.|||-||++|+.+....
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 45788999999999999999999988743
No 260
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.41 E-value=0.09 Score=54.28 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=32.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPD 225 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 225 (1085)
-.++.|.|.+|+||||+|.+++.....+ =..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 4789999999999999999998876432 24578887755553
No 261
>PRK06620 hypothetical protein; Validated
Probab=95.40 E-value=0.11 Score=52.90 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
+.+.|+|++|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999987754
No 262
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.37 E-value=0.12 Score=53.56 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
-.++.|.|..|+||||+|.++......++ ..+++++. .-+..++.+.+ .+++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~--e~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVST--QLTTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeC--CCCHHHHHHHH-HHhCC
Confidence 46999999999999999876665543222 34566663 33556666665 34443
No 263
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.16 Score=58.19 Aligned_cols=92 Identities=22% Similarity=0.261 Sum_probs=57.2
Q ss_pred ccccchHHHHHHHHHHhc-------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 161 EAFESRVSTLKSIQNALT-------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
+++-|-++.++++.+... -...+-|-.+|++|+|||++|+++.+..... | +.++.+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH----
Confidence 344557776666655443 1356788999999999999999999988754 5 334321
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
++....-+. ....+..++++-++--++++.||.++.
T Consensus 503 ----EL~sk~vGe-----SEr~ir~iF~kAR~~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 503 ----ELFSKYVGE-----SERAIREVFRKARQVAPCIIFFDEIDA 538 (693)
T ss_pred ----HHHHHhcCc-----hHHHHHHHHHHHhhcCCeEEehhhHHh
Confidence 222222111 122344555555566778888887754
No 264
>PRK09183 transposase/IS protein; Provisional
Probab=95.33 E-value=0.088 Score=55.54 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
...+.|+|++|+|||+||..+......
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356779999999999999999876543
No 265
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.32 E-value=0.12 Score=56.65 Aligned_cols=57 Identities=28% Similarity=0.397 Sum_probs=42.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhcc----CCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKK----LFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
-.++-|+|.+|+|||+++.+++....... .=..++||+....++...+. ++++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 47889999999999999999987654211 01379999999988887754 44555554
No 266
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.32 E-value=0.013 Score=58.90 Aligned_cols=134 Identities=16% Similarity=0.099 Sum_probs=71.9
Q ss_pred CCCcceeeeccCCCcccccc----ChhhhcCCCcceEEEecCCcc----cCCch-------hhhccccccEEeccCcccc
Q 037935 513 CPQLEFLHIDPKITFAELNI----PDNFFKGMKKLRVVDLTRVRL----FSLPS-------SIGQLTKLRMLDLTDCLQL 577 (1085)
Q Consensus 513 ~~~Lr~L~l~~~~~~~~~~l----~~~~~~~l~~Lr~L~Ls~~~i----~~lp~-------~i~~L~~L~~L~Ls~~~~l 577 (1085)
+..+..+++++|. +..- ....+.+-++|++.+++.--. .++|+ .+-+|++|+..+||+| .+
T Consensus 29 ~d~~~evdLSGNt---igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Af 104 (388)
T COG5238 29 MDELVEVDLSGNT---IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AF 104 (388)
T ss_pred hcceeEEeccCCc---ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-cc
Confidence 3455556666664 2111 112234456777777765321 12332 4567888888888888 44
Q ss_pred c-ccch---hhhhccccCCEEeccCCCcchhhcccCCcccc------ccHHHhhcCCCCcEEEEEeccCCCCCCcc----
Q 037935 578 K-FIVP---NILSSFTRLEELYMGSCSIKWEVRKGNSERSN------ASLDELMHLQRLTTLEIDVEDDSILPDGL---- 643 (1085)
Q Consensus 578 ~-~lp~---~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~------~~~~~l~~L~~L~~L~l~~~~~~~~~~~~---- 643 (1085)
. ..|+ +.+++-+.|.||.+++|.+-....+. .+ ...+...+-+.|++..+..|++...+...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~r----igkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~ 180 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGR----IGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAAL 180 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhH----HHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHH
Confidence 3 3333 33577788888888888763221111 01 01122344567787777777776555432
Q ss_pred --cccccceeeEE
Q 037935 644 --FTKKLERFDIS 654 (1085)
Q Consensus 644 --~l~~L~~L~l~ 654 (1085)
+-.+|+.+.+.
T Consensus 181 l~sh~~lk~vki~ 193 (388)
T COG5238 181 LESHENLKEVKIQ 193 (388)
T ss_pred HHhhcCceeEEee
Confidence 22355555554
No 267
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.32 E-value=0.52 Score=51.65 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=29.8
Q ss_pred HHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 169 TLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 169 ~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.-+++...+..+++ .-+-+.|+.|+||+++|..+....-
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHc
Confidence 45567777665554 4667899999999999999887663
No 268
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.31 E-value=0.11 Score=50.41 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 165 SRVSTLKSIQNALTDVNVS-IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 165 gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
|-++..+.+.+.+..+++. .+-++|..|+||+++|..+.+..-
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4566777777777766665 578999999999999999988654
No 269
>PRK06547 hypothetical protein; Provisional
Probab=95.30 E-value=0.027 Score=55.09 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=28.6
Q ss_pred HHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 173 IQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 173 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+...+......+|+|.|.+|+||||+|+.+.+...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44445556788999999999999999999998754
No 270
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.25 E-value=0.097 Score=57.19 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=43.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhc----cCCCEEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREK----KLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE 240 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 240 (1085)
..++-|+|.+|+|||+++..++-..... ..-..++||+....|.++.+ .+|++.++.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 5788899999999999998877543311 11236999999999998876 4566666543
No 271
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.25 E-value=0.11 Score=56.56 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=41.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh---cc-CCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQARE---KK-LFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
...++.|+|.+|+|||+++..++..... .+ .-..++|++....+....+ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 3589999999999999999988764321 11 1236799999888888764 445666554
No 272
>PTZ00035 Rad51 protein; Provisional
Probab=95.19 E-value=0.15 Score=55.90 Aligned_cols=57 Identities=26% Similarity=0.325 Sum_probs=41.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhh---c-cCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQARE---K-KLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~---~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
-.++.|+|.+|+||||++..++-.... . ..=..++||+....++.+.+ .++++.++.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 479999999999999999988765431 1 11235789998888887774 445666554
No 273
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.17 E-value=0.11 Score=55.24 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+...+|+|.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999988766554
No 274
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.029 Score=52.01 Aligned_cols=45 Identities=33% Similarity=0.509 Sum_probs=36.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCC
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLEL 241 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 241 (1085)
+|.|-|.+|+||||+|+.+.+...-+ | | +.-.++++|++..|.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999988743 1 1 23468899998888764
No 275
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.14 E-value=0.22 Score=57.67 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
..-+.|+|.+|+|||+|++++.+....+..--.+++++.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 356899999999999999999998764421223556654
No 276
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.13 E-value=0.11 Score=54.03 Aligned_cols=92 Identities=25% Similarity=0.300 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh--hccCCCEEEEEEeCCCc-CHHHHHHHHHHHhCCCC-------CCchHH---
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR--EKKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLEL-------SDEAEY--- 247 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~--- 247 (1085)
.-..++|.|.+|+|||+|+..+.+... .+++-+.++++-+.+.. +..++.+++...=.... .+++..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 346789999999999999999888754 12235778888887654 56777777765422211 111111
Q ss_pred ---HHHHHHHHHHH-c-CCcEEEEEeCCCC
Q 037935 248 ---RRASRLYERLK-N-ENKILVILDNIWK 272 (1085)
Q Consensus 248 ---~~~~~~~~~l~-~-~~~~LlvlDdv~~ 272 (1085)
.....+.++++ + ++++|+++||+..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 11233445554 3 7999999999754
No 277
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.13 E-value=0.073 Score=65.53 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=60.0
Q ss_pred ccccchHHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALTD---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQG 231 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 231 (1085)
..++|.+..++.+.+.+.. ....++.++|+.|+|||++|+.+++... ...+.++.+.-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----
Confidence 3477888888888777651 1245788999999999999999998763 224555554422111
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 232 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 232 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
.+...++.+..... .+....+.+.++....-+++||+++..
T Consensus 525 ~~~~lig~~~gyvg-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 TVSRLIGAPPGYVG-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred cHHHHhcCCCCCcc-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 11222222211100 011223344444455569999999764
No 278
>PRK14974 cell division protein FtsY; Provisional
Probab=95.11 E-value=0.18 Score=54.88 Aligned_cols=88 Identities=25% Similarity=0.278 Sum_probs=50.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc--CHHHHHHHHHHHhCCCCCC----chHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP--DIKKIQGEIAEKLGLELSD----EAEYRRASRLY 254 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~ 254 (1085)
+..+|.++|+.|+||||.+..++.....+ .+ .++.+.. ..+ ....-++..++.++.+... .+....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46899999999999999998888776543 23 3444442 222 2333456667777754321 11112222222
Q ss_pred HHHH-cCCcEEEEEeCCCC
Q 037935 255 ERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 255 ~~l~-~~~~~LlvlDdv~~ 272 (1085)
+... .+.. ++++|..-.
T Consensus 216 ~~~~~~~~D-vVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGID-VVLIDTAGR 233 (336)
T ss_pred HHHHhCCCC-EEEEECCCc
Confidence 3322 2333 888898744
No 279
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.11 E-value=0.044 Score=51.87 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=46.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEE
Q 037935 185 IGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKIL 264 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 264 (1085)
|.++|.+|+|||+||+.+++.... ...-+.++...+..++....--.-+...-... .+.+.. .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~------~l~~a~--~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDG------PLVRAM--RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-------CCCTTH--HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceeeeeecccccccccc------cccccc--cceeE
Confidence 679999999999999999998842 24446778888877766543222110000000 000011 27899
Q ss_pred EEEeCCCCc
Q 037935 265 VILDNIWKY 273 (1085)
Q Consensus 265 lvlDdv~~~ 273 (1085)
+|+|++...
T Consensus 69 l~lDEin~a 77 (139)
T PF07728_consen 69 LVLDEINRA 77 (139)
T ss_dssp EEESSCGG-
T ss_pred EEECCcccC
Confidence 999999843
No 280
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.10 E-value=0.065 Score=66.23 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=57.3
Q ss_pred ccccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 161 EAFESRVSTLKSIQNALTD-------------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
+++.|.+..++++.+++.- ...+.+.++|++|+|||++|+.+++..... | +.++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~-----i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F-----ISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E-----EEEecH----
Confidence 4578999999888776531 223578899999999999999999876422 2 222211
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
.+ .... .. .....+..+++......+.+|++||++.
T Consensus 247 ~i----~~~~----~g-~~~~~l~~lf~~a~~~~p~il~iDEid~ 282 (733)
T TIGR01243 247 EI----MSKY----YG-ESEERLREIFKEAEENAPSIIFIDEIDA 282 (733)
T ss_pred HH----hccc----cc-HHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11 1100 01 1122344455555456778999999864
No 281
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.0034 Score=63.05 Aligned_cols=105 Identities=20% Similarity=0.175 Sum_probs=73.2
Q ss_pred CCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccch-hhhhccccC
Q 037935 513 CPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVP-NILSSFTRL 591 (1085)
Q Consensus 513 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~-~~~~~L~~L 591 (1085)
+.+.+.|++-+|. ...| .++.+|+.|++|.||=|.|+.+. .+..|++|+.|.|+.| .|..+.. ..+.++++|
T Consensus 18 l~~vkKLNcwg~~---L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCG---LDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCC---ccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchh
Confidence 3455666666665 3333 35788999999999999999885 4889999999999999 7776654 225788889
Q ss_pred CEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEE
Q 037935 592 EELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLE 630 (1085)
Q Consensus 592 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 630 (1085)
+.|-|..|......+ ......-+.-|++|+.|+
T Consensus 91 r~LWL~ENPCc~~ag------~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAG------QNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccc------hhHHHHHHHHcccchhcc
Confidence 998888876521110 111233466777887766
No 282
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.08 E-value=0.056 Score=55.36 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=53.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 037935 37 NYNANLENLKAEMEKLKAERTSIQRRVSEAKEKGEEIEEKVEKWLVSANGIIDQAAKFVEDEE 99 (1085)
Q Consensus 37 ~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~~~~~~~~~ed~ld~~~ 99 (1085)
.+.+.+..++.+++.+|.+++.++.|++...............+..++.+.||++|+++|..-
T Consensus 311 rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 311 RYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 667788899999999999999999999987444344455599999999999999999998753
No 283
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.08 E-value=0.13 Score=58.47 Aligned_cols=86 Identities=15% Similarity=0.229 Sum_probs=48.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh-hccCCCEEEEEEeCCCc-CHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHc
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR-EKKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 259 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 259 (1085)
.++++++|++|+||||++..+..... .++ -..+..|+..... ...+-++...+.++.+.........+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh--
Confidence 36999999999999999988877654 222 2356667653311 112233344455555443222222233333444
Q ss_pred CCcEEEEEeCC
Q 037935 260 ENKILVILDNI 270 (1085)
Q Consensus 260 ~~~~LlvlDdv 270 (1085)
...=+||+|..
T Consensus 298 ~~~DlVlIDt~ 308 (424)
T PRK05703 298 RDCDVILIDTA 308 (424)
T ss_pred CCCCEEEEeCC
Confidence 23457778865
No 284
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.06 E-value=0.19 Score=54.79 Aligned_cols=87 Identities=23% Similarity=0.263 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCCcHH-HHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKT-TLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK 258 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKT-tLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 258 (1085)
+-++|++||+.||||| |||+..+.-....+ =..+..|+.-. .....+-++.-++-++.+.....+...+......+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence 4799999999999998 56665555441111 23466666532 234445556667777777655544455555555553
Q ss_pred cCCcEEEEEeCC
Q 037935 259 NENKILVILDNI 270 (1085)
Q Consensus 259 ~~~~~LlvlDdv 270 (1085)
++ =+|++|-+
T Consensus 281 -~~-d~ILVDTa 290 (407)
T COG1419 281 -DC-DVILVDTA 290 (407)
T ss_pred -cC-CEEEEeCC
Confidence 34 34445644
No 285
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.093 Score=52.48 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=57.1
Q ss_pred ccccchHHHHHHHHHHhc-------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 161 EAFESRVSTLKSIQNALT-------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
.++-|-.+.++++.+..+ -+..+-|..+|++|.|||-+|++|++....- | +.|-.
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvig----- 244 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIG----- 244 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----Eeehh-----
Confidence 345567777787776543 1345778899999999999999999976532 3 33311
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
.++.+..-+ .....+..+++-.+..|-|+|.+|.++.
T Consensus 245 ---selvqkyvg-----egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 245 ---SELVQKYVG-----EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred ---HHHHHHHhh-----hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 112111110 0122244555555567889999998854
No 286
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.02 E-value=0.17 Score=51.15 Aligned_cols=62 Identities=27% Similarity=0.312 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEE-------EEeCCCcCHHHH--HHHHHHHhCCCCC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVF-------SEVSQTPDIKKI--QGEIAEKLGLELS 242 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w-------v~~~~~~~~~~~--~~~i~~~l~~~~~ 242 (1085)
+...|.++||+|.||||..+.++.....++.-..++= |+..-..++++. .++..++.+....
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 4567888999999999999999998876533222221 122233345443 4567777766544
No 287
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.1 Score=57.76 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=45.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 260 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 260 (1085)
..++.++|.+|+||||++..+.........+ .+..++.-. .......++..++.++.+...... ...+.+.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~---~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD---IKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHH---HHHHHHHHHhC
Confidence 4689999999999999999998755322222 233333321 112233344445555554332221 23344444333
Q ss_pred CcEEEEEeC
Q 037935 261 NKILVILDN 269 (1085)
Q Consensus 261 ~~~LlvlDd 269 (1085)
..=+||+|-
T Consensus 299 ~~D~VLIDT 307 (432)
T PRK12724 299 GSELILIDT 307 (432)
T ss_pred CCCEEEEeC
Confidence 334588884
No 288
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.00 E-value=0.11 Score=57.65 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=36.8
Q ss_pred ccchHHHHHHHHHHhc-cCCceE-EEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 163 FESRVSTLKSIQNALT-DVNVSI-IGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 163 ~~gr~~~~~~l~~~l~-~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
++|-+....++..+.. .++... +-++|+.|+||||+|.++.+....
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 4666777777777776 445666 999999999999999999998763
No 289
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.98 E-value=0.037 Score=55.17 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEE
Q 037935 165 SRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSE 219 (1085)
Q Consensus 165 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~ 219 (1085)
.+..+.+..+++|. ...++.+.|++|.|||.||.+..-+.-..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34455666777776 457999999999999999998887665557899887764
No 290
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.97 E-value=0.17 Score=55.42 Aligned_cols=57 Identities=30% Similarity=0.394 Sum_probs=42.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccC----CCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKL----FDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
-.++-|+|.+|+|||+++.+++........ =..++||+....++...+.+ +++.++.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 578899999999999999998876532211 14799999999888877654 4455543
No 291
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.96 E-value=0.083 Score=53.47 Aligned_cols=95 Identities=25% Similarity=0.393 Sum_probs=57.9
Q ss_pred HHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-cCHHHHHHHHHHHhCC-------CCCC
Q 037935 173 IQNALTD-VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGL-------ELSD 243 (1085)
Q Consensus 173 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~ 243 (1085)
.++.+.. ..-..++|+|.+|+|||+|++.+.+... -+.++++-+.+. ..+.++.+++...-.. ...+
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 3444441 2336789999999999999999999875 345677888755 4566677666443111 1111
Q ss_pred chHHH------HHHHHHHHHH-cCCcEEEEEeCCC
Q 037935 244 EAEYR------RASRLYERLK-NENKILVILDNIW 271 (1085)
Q Consensus 244 ~~~~~------~~~~~~~~l~-~~~~~LlvlDdv~ 271 (1085)
+.... ......++++ +++++|+++||+.
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hhHHHHhhhhccchhhhHHHhhcCCceeehhhhhH
Confidence 11111 1122223333 5999999999973
No 292
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.084 Score=60.55 Aligned_cols=74 Identities=24% Similarity=0.259 Sum_probs=48.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC--CcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHc
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ--TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 259 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 259 (1085)
..-|.|.|..|+|||+||+++++... +.+.-.+..|+++. ....+.+++.+-. .+.....
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-----------------vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-----------------VFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH-----------------HHHHHHh
Confidence 35788999999999999999999887 33444456666653 2233444333322 2222224
Q ss_pred CCcEEEEEeCCCCc
Q 037935 260 ENKILVILDNIWKY 273 (1085)
Q Consensus 260 ~~~~LlvlDdv~~~ 273 (1085)
..+-+|||||++..
T Consensus 493 ~~PSiIvLDdld~l 506 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCL 506 (952)
T ss_pred hCCcEEEEcchhhh
Confidence 78999999998643
No 293
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.90 E-value=0.068 Score=64.92 Aligned_cols=102 Identities=14% Similarity=0.197 Sum_probs=59.3
Q ss_pred cccchHHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHH
Q 037935 162 AFESRVSTLKSIQNALTD---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGE 232 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 232 (1085)
.++|.+..++.+.+.+.. .....+.++|+.|+|||++|+.+...... ..+.++++.-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----c
Confidence 478888888888887651 22467889999999999999999887642 23344443321111 1
Q ss_pred HHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 233 IAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 233 i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
+.+-+|.+..-.. .+....+.+.+......+++||+++..
T Consensus 530 ~~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 2222332211110 011112333444445679999999875
No 294
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.90 E-value=0.022 Score=53.08 Aligned_cols=22 Identities=50% Similarity=0.813 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 037935 185 IGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
|.|.|..|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999884
No 295
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.90 E-value=0.12 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+|+|.|..|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 296
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.88 E-value=0.039 Score=62.09 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=40.8
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCC
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFD 213 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~ 213 (1085)
..++||+..++.+...+..+ .-|.|.|.+|+|||++|+.+.......+.|.
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 34799999999998887643 5678999999999999999998765433343
No 297
>PRK07667 uridine kinase; Provisional
Probab=94.87 E-value=0.043 Score=55.18 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=29.7
Q ss_pred HHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 171 KSIQNALT--DVNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 171 ~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
+.|.+.+. .++..+|+|-|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34555554 345589999999999999999999998764
No 298
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.86 E-value=0.09 Score=58.31 Aligned_cols=85 Identities=24% Similarity=0.314 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHc
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDE--AEYRRASRLYERLKN 259 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~ 259 (1085)
-.++.|.|.+|+|||||+.+++.....+ -..++|++.... ..++ +.-++.++...... .....+..+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4799999999999999999998876543 246778876543 3333 22345555432211 001113344444444
Q ss_pred CCcEEEEEeCCC
Q 037935 260 ENKILVILDNIW 271 (1085)
Q Consensus 260 ~~~~LlvlDdv~ 271 (1085)
.+.-++|+|.+.
T Consensus 157 ~~~~lVVIDSIq 168 (372)
T cd01121 157 LKPDLVIIDSIQ 168 (372)
T ss_pred cCCcEEEEcchH
Confidence 566778888864
No 299
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.85 E-value=0.064 Score=52.67 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.|.|.|.+|+||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998653
No 300
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.85 E-value=0.17 Score=56.77 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 259 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 259 (1085)
.-.+++++|..|+||||++..+..........+.+.++.... .....+-+....+.++.+................+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l-- 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL-- 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh--
Confidence 347999999999999999998877543222233445444422 22333445556666666544322222233334444
Q ss_pred CCcEEEEEeCC
Q 037935 260 ENKILVILDNI 270 (1085)
Q Consensus 260 ~~~~LlvlDdv 270 (1085)
...-++++|-.
T Consensus 268 ~~~d~VLIDTa 278 (420)
T PRK14721 268 RGKHMVLIDTV 278 (420)
T ss_pred cCCCEEEecCC
Confidence 23345666754
No 301
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.85 E-value=0.11 Score=56.54 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
..-+.++|..|+|||.||.++++....++ ..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH
Confidence 37799999999999999999999876543 24666665
No 302
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.84 E-value=0.025 Score=45.60 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 303
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.84 E-value=0.07 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
||.|+|++|+||||+|+.+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988664
No 304
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.83 E-value=0.12 Score=51.01 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
++.++|++|+||||+++.+.......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999999999876643
No 305
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.062 Score=55.63 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhc--cCCCEEEEEEeC
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREK--KLFDRVVFSEVS 221 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~--~~f~~~~wv~~~ 221 (1085)
++|-+.|++|.|||+|+++.++...++ +.|....-+.++
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 789999999999999999999988764 334333334443
No 306
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.80 E-value=0.058 Score=53.56 Aligned_cols=42 Identities=21% Similarity=0.428 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCH
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDI 226 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 226 (1085)
.|+|+|-||+||||+|.......-.++.|+. .=|+.-..+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V-LvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV-LVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE-EEEeCCCCCCh
Confidence 5899999999999999997776665544543 33666555544
No 307
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.79 E-value=0.95 Score=50.01 Aligned_cols=67 Identities=21% Similarity=0.332 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHH-HHHHHHHhhccCCCEEEEEEeCC---CcCHHHHHHHHHHHhC
Q 037935 166 RVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLV-KEFARQAREKKLFDRVVFSEVSQ---TPDIKKIQGEIAEKLG 238 (1085)
Q Consensus 166 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~ 238 (1085)
|.+..++|..||.+..-..|.|.|+-|.||+.|+ .++.++.+. +..+++.+ ..+-..+.+.++.++|
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvG 71 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVG 71 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcC
Confidence 5667889999998777789999999999999999 777776432 55555533 2344555556655554
No 308
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.77 E-value=0.5 Score=44.42 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=69.2
Q ss_pred HHHHHH-HHHHHHHhhhhhHHhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Q 037935 8 LEIIVT-LVLELVKCLAPPTERQLVYLRKRNYNANLENLKAEMEKLKAERTSIQRRVSEAKEKGEEIEEKVEKWLVSANG 86 (1085)
Q Consensus 8 a~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~~~~ 86 (1085)
||.+.+ ++|.+++-+...+.+...--. .+ +.-+++|.+.+..+.-.+++.+.-+...+..-+.-+.++.+
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~--~f-------k~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~ 73 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSL--SF-------KSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKE 73 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hh-------hhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHH
Confidence 555554 345555555555554444333 33 44556666666666666666555444445555777888999
Q ss_pred HHHHHHHHHHhHhhcccccccCcCCChhHHHHHhHHHHHHHHHHHHHH
Q 037935 87 IIDQAAKFVEDEESTNKRCLKGLCPNLKTRYQLSKKAETEVKALVELG 134 (1085)
Q Consensus 87 ~~~~~ed~ld~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~ 134 (1085)
...+++++++.+..-++ .++...++.+++|+++.+.+....
T Consensus 74 ~L~~g~~LV~k~sk~~r-------~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 74 LLEKGKELVEKCSKVRR-------WNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHHHHhccccH-------HHHHhhHhHHHHHHHHHHHHHHHh
Confidence 99999999987643221 235566778889998888887764
No 309
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.77 E-value=0.11 Score=59.62 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=53.8
Q ss_pred ccccchHHHHHHHHHHh---c----c---CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHH
Q 037935 161 EAFESRVSTLKSIQNAL---T----D---VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQ 230 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l---~----~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 230 (1085)
.++.|.+..++.+.+.. . . ...+-|-++|++|+|||.+|+++.+..... | +-++.+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~------~-- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVG------K-- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhH------H--
Confidence 34667776665554321 1 1 234678899999999999999999987532 2 112221 1
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 231 GEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 231 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
+.. .....+ ...+..+++......+++|++|+++.
T Consensus 295 --l~~----~~vGes-e~~l~~~f~~A~~~~P~IL~IDEID~ 329 (489)
T CHL00195 295 --LFG----GIVGES-ESRMRQMIRIAEALSPCILWIDEIDK 329 (489)
T ss_pred --hcc----cccChH-HHHHHHHHHHHHhcCCcEEEehhhhh
Confidence 111 111111 22344444444457899999999874
No 310
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.75 E-value=0.22 Score=51.97 Aligned_cols=53 Identities=11% Similarity=0.293 Sum_probs=36.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLG 238 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 238 (1085)
.-+++.|.|.+|+|||++|.++....-.+ =..++||+... +..++.+.+ .+++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~-~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM-AQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH-HHhC
Confidence 34799999999999999999876654322 34688888754 555655553 3444
No 311
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.74 E-value=0.015 Score=34.55 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=17.6
Q ss_pred cceEEEecCCcccCCchhhhcc
Q 037935 542 KLRVVDLTRVRLFSLPSSIGQL 563 (1085)
Q Consensus 542 ~Lr~L~Ls~~~i~~lp~~i~~L 563 (1085)
+|++|||++|+++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5889999999999888877654
No 312
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.74 E-value=0.029 Score=56.61 Aligned_cols=26 Identities=46% Similarity=0.698 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
||+|.|.+|+||||+|+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999999999988743
No 313
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.69 E-value=0.14 Score=58.31 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=38.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLEL 241 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 241 (1085)
.+|++++|..|+||||.+..++.....+..-..+..|+... .....+-++...+.++.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 37999999999999999999988764332222455555432 1233344455556666543
No 314
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.65 E-value=0.42 Score=53.98 Aligned_cols=89 Identities=24% Similarity=0.295 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCCCC----chHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSD----EAEYRRASRLYE 255 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~ 255 (1085)
...++.++|.+|+||||.|..++.....+..+ .++-|++-. .....+-++...+..+.+... .+..+......+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 45799999999999999999888775422222 344454432 112333445556666554221 122233334444
Q ss_pred HHHcCCcE-EEEEeCCC
Q 037935 256 RLKNENKI-LVILDNIW 271 (1085)
Q Consensus 256 ~l~~~~~~-LlvlDdv~ 271 (1085)
... .+.| ++|+|-.-
T Consensus 177 ~~~-~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAK-ENGFDVVIVDTAG 192 (428)
T ss_pred HHH-hcCCCEEEEeCCC
Confidence 443 3334 78888654
No 315
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.63 E-value=0.15 Score=61.18 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 260 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 260 (1085)
-+||+++|+.|+||||.+..+.........-..+..++... .....+-++...+.++.+.....+...+....+.+. +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-D 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-C
Confidence 47999999999999999998887664322223455555432 222445566677777765543223333455555553 4
Q ss_pred CcEEEEEeCCC
Q 037935 261 NKILVILDNIW 271 (1085)
Q Consensus 261 ~~~LlvlDdv~ 271 (1085)
+ =+|++|-.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 4 377778765
No 316
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.62 E-value=0.28 Score=52.07 Aligned_cols=89 Identities=20% Similarity=0.267 Sum_probs=49.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCH--HHHHHHHHHHhCCCCC----CchHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDI--KKIQGEIAEKLGLELS----DEAEYRRASRL 253 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~----~~~~~~~~~~~ 253 (1085)
.+.+++.++|.+|+||||.+..++.....++ ..+.+++.-. +.. .+-++..++..+.+.. ..+........
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g--~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQG--KSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 3468999999999999999999887765432 3566666532 222 2333444555553321 11111222222
Q ss_pred HHHHHcCCcEEEEEeCCC
Q 037935 254 YERLKNENKILVILDNIW 271 (1085)
Q Consensus 254 ~~~l~~~~~~LlvlDdv~ 271 (1085)
.+.......=++|+|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 233322444577778653
No 317
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.62 E-value=0.14 Score=57.86 Aligned_cols=91 Identities=23% Similarity=0.362 Sum_probs=60.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-cCHHHHHHHHHHHhCCC-------CCCchHH-----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLE-------LSDEAEY----- 247 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~----- 247 (1085)
.-..++|+|.+|+|||||+..+......+ +-+.++++-+.+. ..+.++.+++...-... ..+.+..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 44689999999999999999988877643 5688888877654 45667777765532211 1111111
Q ss_pred -HHHHHHHHHHH-c-CCcEEEEEeCCCC
Q 037935 248 -RRASRLYERLK-N-ENKILVILDNIWK 272 (1085)
Q Consensus 248 -~~~~~~~~~l~-~-~~~~LlvlDdv~~ 272 (1085)
.....+.++++ + ++++|+++|++..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 12234445554 3 8999999999843
No 318
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.55 E-value=4.4 Score=44.82 Aligned_cols=88 Identities=24% Similarity=0.331 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe-CCCcCHHHHHHHHHHHhCCCCCC----chHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV-SQTPDIKKIQGEIAEKLGLELSD----EAEYRRASRLYE 255 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~ 255 (1085)
...||-.||.-|.||||-|..+++..+.++ + .+.-|.+ -..+...+-++.++++.+.+.-. .+..+.+..-.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~-~-kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKG-K-KVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcC-C-ceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 457899999999999999998888777532 2 2333333 12334556677888888776422 233444455555
Q ss_pred HHHcCCcEEEEEeCC
Q 037935 256 RLKNENKILVILDNI 270 (1085)
Q Consensus 256 ~l~~~~~~LlvlDdv 270 (1085)
+.+....=++|+|-.
T Consensus 177 ~ak~~~~DvvIvDTA 191 (451)
T COG0541 177 KAKEEGYDVVIVDTA 191 (451)
T ss_pred HHHHcCCCEEEEeCC
Confidence 555344345566654
No 319
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.51 E-value=0.084 Score=47.46 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=34.1
Q ss_pred cccchHHHHHHHHHHhc----c---CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 162 AFESRVSTLKSIQNALT----D---VNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~----~---~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.++|..-..+.+++++. + .+.-|++..|.+|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46777666666666554 2 355799999999999999999888874
No 320
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.51 E-value=0.049 Score=50.71 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=37.9
Q ss_pred CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEeccCcccccccchhhhhcccc
Q 037935 512 ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTR 590 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~ 590 (1085)
.|.+|+.+.+... ...++...|.+++.|+.+++.++ +..++ ..+.++..|+++.+.+ .+..++...|..+++
T Consensus 10 ~~~~l~~i~~~~~----~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 10 NCSNLESITFPNT----IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTN 82 (129)
T ss_dssp T-TT--EEEETST------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred CCCCCCEEEECCC----eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccccccc
Confidence 4456666665432 44555566666666666666553 55544 2455555666666654 455555555566666
Q ss_pred CCEEeccCC
Q 037935 591 LEELYMGSC 599 (1085)
Q Consensus 591 L~~L~L~~~ 599 (1085)
|+.+++..+
T Consensus 83 l~~i~~~~~ 91 (129)
T PF13306_consen 83 LKNIDIPSN 91 (129)
T ss_dssp ECEEEETTT
T ss_pred ccccccCcc
Confidence 666666443
No 321
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.50 E-value=0.069 Score=52.39 Aligned_cols=49 Identities=27% Similarity=0.354 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAE 235 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 235 (1085)
..+|+|-||=|+||||||+.+.++.+.+ ++.-.+...+=+..+..++-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHHH
Confidence 4789999999999999999999998743 222334444444455544433
No 322
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.49 E-value=0.018 Score=61.05 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=50.8
Q ss_pred HHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHH
Q 037935 171 KSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRA 250 (1085)
Q Consensus 171 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 250 (1085)
..+++.+...+ +-+.++|+.|+|||++++.......... | .+.-++++...+...+++.+-..+.......-..
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP--- 96 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP--- 96 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE---
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC---
Confidence 44566555544 4568999999999999999887543321 1 2444666665555555433322221111000000
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCc
Q 037935 251 SRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 251 ~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
..+|+.++.+||+.-.
T Consensus 97 -------~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 97 -------PGGKKLVLFIDDLNMP 112 (272)
T ss_dssp -------ESSSEEEEEEETTT-S
T ss_pred -------CCCcEEEEEecccCCC
Confidence 0478999999998643
No 323
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.49 E-value=0.037 Score=56.64 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.+..+|+|+|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 324
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.035 Score=50.56 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ 222 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 222 (1085)
+-|.|.|.+|+||||+|.+++..... -|+++|+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd 40 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISD 40 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhh
Confidence 45789999999999999999976543 2667665
No 325
>PRK05439 pantothenate kinase; Provisional
Probab=94.49 E-value=0.25 Score=52.93 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=44.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHH--HHHHhCCCCCCchHHHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGE--IAEKLGLELSDEAEYRRASRLYERL 257 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~~~~~l 257 (1085)
+..-+|+|.|.+|+||||+|+.+.........-..+.-++.-.=+...+.+.. +....|. .+.-+.+.+......+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~--Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGF--PESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCC--cccccHHHHHHHHHHH
Confidence 45679999999999999999998886542211122333444332222222221 1111121 2233445566777777
Q ss_pred HcCCc
Q 037935 258 KNENK 262 (1085)
Q Consensus 258 ~~~~~ 262 (1085)
+.++.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 76665
No 326
>PTZ00301 uridine kinase; Provisional
Probab=94.46 E-value=0.039 Score=55.84 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..+|+|.|.+|.||||+|+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 47999999999999999999988764
No 327
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.46 E-value=0.087 Score=59.28 Aligned_cols=47 Identities=26% Similarity=0.192 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHHHhc-------cC---------CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALT-------DV---------NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~-------~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|.+..++.+...+. .. ..+.+.++|++|+|||++|+.+.....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 357899998887755442 00 125689999999999999999987664
No 328
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.44 E-value=0.14 Score=64.10 Aligned_cols=106 Identities=20% Similarity=0.277 Sum_probs=60.5
Q ss_pred ccccchHHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALTD---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQG 231 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 231 (1085)
..++|.+..++.+.+.+.. ....++.++|+.|+|||++|+.+....... -...+-++++.-.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch---
Confidence 4588999999998888752 124578899999999999999999876422 12334444443222111
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 232 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 232 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
..+-+|.+..-.. .+....+.+.+......+|+||++...
T Consensus 640 -~~~l~g~~~g~~g-~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 640 -VARLIGAPPGYVG-YEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred -HHHhcCCCCCccC-cccccHHHHHHHcCCCcEEEEeccccC
Confidence 1111222211000 000122334444344458999999765
No 329
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.42 E-value=0.11 Score=57.18 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=48.2
Q ss_pred ccccchHHHHHHHHHHhccC--------------CceEEEEEcCCCCcHHHHHHHHHHHHhhcc-CCCEEEEEEeCC-Cc
Q 037935 161 EAFESRVSTLKSIQNALTDV--------------NVSIIGVYGMGGIGKTTLVKEFARQAREKK-LFDRVVFSEVSQ-TP 224 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~--------------~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~~wv~~~~-~~ 224 (1085)
..++|.++.++.+.-++... ..+.|.++|++|+|||++|+.+.......- +.+..-++.... ..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 45788888888776555420 236789999999999999999999876430 012221222211 23
Q ss_pred CHHHHHHHHHHHh
Q 037935 225 DIKKIQGEIAEKL 237 (1085)
Q Consensus 225 ~~~~~~~~i~~~l 237 (1085)
+...+++.+....
T Consensus 92 dvE~i~r~l~e~A 104 (441)
T TIGR00390 92 DVESMVRDLTDAA 104 (441)
T ss_pred CHHHHHHHHHHHH
Confidence 5666666665443
No 330
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.41 E-value=0.036 Score=52.77 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999987654
No 331
>PRK08233 hypothetical protein; Provisional
Probab=94.41 E-value=0.037 Score=55.34 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..+|+|.|.+|+||||+|+.+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 332
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.41 E-value=0.12 Score=48.07 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=31.8
Q ss_pred ccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeec
Q 037935 833 KILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSD 895 (1085)
Q Consensus 833 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 895 (1085)
..+++|+.+.+.. .+..+....|.. +++|+.+++..+ +..++...|.++++|+.+.+.+
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~--~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSN--CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT---TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred hCCCCCCEEEECC-CeeEeChhhccc--cccccccccccc-ccccceeeeecccccccccccc
Confidence 4456777777764 456666666655 567777777653 7777766777777777777754
No 333
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.40 E-value=0.12 Score=53.04 Aligned_cols=89 Identities=20% Similarity=0.276 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEE--eC--CCcCHHHHHHHHHHHhCCCCC-------Cch-HHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSE--VS--QTPDIKKIQGEIAEKLGLELS-------DEA-EYR 248 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~--~~--~~~~~~~~~~~i~~~l~~~~~-------~~~-~~~ 248 (1085)
.-.+++|||.+|+||||+++.+..-.+.. ...+.|-. +. ......+-..++++.++.+.. +-+ ...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT--SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45799999999999999999998865532 23333311 10 022344455666776664321 111 111
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 249 RASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 249 ~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
....+.+.+ .-++=++|.|+--+
T Consensus 116 QRi~IARAL-al~P~liV~DEpvS 138 (268)
T COG4608 116 QRIGIARAL-ALNPKLIVADEPVS 138 (268)
T ss_pred hhHHHHHHH-hhCCcEEEecCchh
Confidence 122233333 47888999998543
No 334
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.40 E-value=0.065 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.|.|+|++|+||||+|+.+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999988765
No 335
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.042 Score=54.72 Aligned_cols=29 Identities=45% Similarity=0.610 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
.+.+|+|.|.+|.||||+|+.++...+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 45799999999999999999999987743
No 336
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.39 E-value=0.041 Score=56.20 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+...+|+|+|.+|+||||||+.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998654
No 337
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.36 E-value=0.3 Score=52.43 Aligned_cols=84 Identities=24% Similarity=0.343 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCC------chHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD------EAEYRRASRLYE 255 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~ 255 (1085)
-+++-|+|..|+||||||-.+....... -..++||+....++.. .++++|.+.+. ....+.+ ...+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al-~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQAL-WIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHH-HHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHH-HHHH
Confidence 4799999999999999999988876543 3568999998876654 34555554321 1222222 3333
Q ss_pred H-HHcCCcEEEEEeCCCCc
Q 037935 256 R-LKNENKILVILDNIWKY 273 (1085)
Q Consensus 256 ~-l~~~~~~LlvlDdv~~~ 273 (1085)
. ++.+.--++|+|-|...
T Consensus 125 ~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-
T ss_pred HHhhcccccEEEEecCccc
Confidence 3 34455568899988654
No 338
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.35 E-value=0.14 Score=49.68 Aligned_cols=27 Identities=41% Similarity=0.631 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
+.|.+.|.+|+||||+|+++.+..+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 457789999999999999999988754
No 339
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.35 E-value=0.24 Score=52.09 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=40.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQG 231 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 231 (1085)
.-+++=|+|+.|.||||+|-+++-..... -..++|++....+++..+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH
Confidence 34788999999999999998877766543 34799999999999877643
No 340
>PRK04296 thymidine kinase; Provisional
Probab=94.33 E-value=0.078 Score=53.10 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCC---chHHHHHHHHHHHHHc
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD---EAEYRRASRLYERLKN 259 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~l~~ 259 (1085)
.++.|+|..|.||||+|..+..+.... -..++.+ ...++.+.....+++.++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVF--KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEE--eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 477899999999999999998877643 2233333 12223333344556666543322 111122222222 23
Q ss_pred CCcEEEEEeCCC
Q 037935 260 ENKILVILDNIW 271 (1085)
Q Consensus 260 ~~~~LlvlDdv~ 271 (1085)
++.-+||+|.+.
T Consensus 77 ~~~dvviIDEaq 88 (190)
T PRK04296 77 EKIDCVLIDEAQ 88 (190)
T ss_pred CCCCEEEEEccc
Confidence 455589999984
No 341
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.31 E-value=0.22 Score=52.55 Aligned_cols=94 Identities=12% Similarity=0.158 Sum_probs=52.7
Q ss_pred HHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCC-------ch
Q 037935 173 IQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD-------EA 245 (1085)
Q Consensus 173 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~ 245 (1085)
..+++...+..+|.|+|.+|+|||||...+.+..... ... +.+ .....+..+ .+.++..+.+... -.
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~~~-~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl 168 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--VPC-AVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHL 168 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--CCE-EEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcC
Confidence 3444556788999999999999999999999987543 322 222 222222222 2223444332111 11
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 246 EYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
+...+...+..+.....=++|+++|-.
T Consensus 169 ~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 169 DAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred cHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 122344445555434445778898864
No 342
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.31 E-value=0.047 Score=51.30 Aligned_cols=39 Identities=21% Similarity=0.414 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ 222 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 222 (1085)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 589999999999999999999998754 355555665544
No 343
>PRK04328 hypothetical protein; Provisional
Probab=94.29 E-value=0.24 Score=52.01 Aligned_cols=54 Identities=13% Similarity=0.254 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
.-.++.|.|.+|+|||++|.++....-.+ =..++|++... +..++. +.+++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee--~~~~i~-~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEE--HPVQVR-RNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeC--CHHHHH-HHHHHcCC
Confidence 34799999999999999999876654322 24578888765 344433 34455553
No 344
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.26 E-value=1.3 Score=48.52 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+-++|+.|+|||++|+.+....-
T Consensus 21 ~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 21 PHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 35777899999999999999987654
No 345
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.0091 Score=57.53 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=15.1
Q ss_pred cCccEEEeccccCcccccchhhhhhcccccEEEEcC
Q 037935 970 RNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFG 1005 (1085)
Q Consensus 970 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~ 1005 (1085)
++|+.|+|++|++|++. ....+..+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechh-HHHHHHHhhhhHHHHhcC
Confidence 34444455444444443 122333444444444444
No 346
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.24 E-value=0.25 Score=56.51 Aligned_cols=167 Identities=14% Similarity=0.144 Sum_probs=94.8
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
++++|.+.....|...+..+++ .-....|.-|+||||+|+.++...-.... ....+++.-...++|...-..
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcCCcc
Confidence 4568999999999988875543 45567899999999999999987654321 112233333333444332111
Q ss_pred CC-----CCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--ccccccccccCCCCCCcEEEe--------------
Q 037935 240 EL-----SDEAEYRRASRLYERLK----NENKILVILDNIWKY--LDLDTIGIPFGNDHEGYNFLI-------------- 294 (1085)
Q Consensus 240 ~~-----~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ilv-------------- 294 (1085)
+. ......+.+..+.+... .++.=+.|+|+|.-. ..|+.+...+-.-...-+.|+
T Consensus 89 DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlS 168 (515)
T COG2812 89 DVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILS 168 (515)
T ss_pred cchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhh
Confidence 10 01112334555555554 466668899999765 456665444432211222222
Q ss_pred -------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchH
Q 037935 295 -------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPI 335 (1085)
Q Consensus 295 -------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 335 (1085)
..++.++-...+...+.. ......++....|++...|...
T Consensus 169 Rcq~f~fkri~~~~I~~~L~~i~~~-E~I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 169 RCQRFDFKRLDLEEIAKHLAAILDK-EGINIEEDALSLIARAAEGSLR 215 (515)
T ss_pred ccccccccCCCHHHHHHHHHHHHHh-cCCccCHHHHHHHHHHcCCChh
Confidence 677777777777666632 1222334555666666666443
No 347
>PRK03839 putative kinase; Provisional
Probab=94.21 E-value=0.041 Score=54.80 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.|.|+|++|+||||+|+.+++....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999998753
No 348
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.21 E-value=0.3 Score=50.95 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLG 238 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 238 (1085)
.-+++.|+|.+|+|||++|.++....-.+ =..++|++.... ..++.+.+ ++++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCC
Confidence 34799999999999999999986553222 246888888654 45555553 3444
No 349
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.14 E-value=0.065 Score=50.77 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEE
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSE 219 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~ 219 (1085)
..||-|.|.+|.||||||+++.+.....+ ..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG--IKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEec
Confidence 35889999999999999999999987653 3344443
No 350
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.32 Score=57.31 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
..+.+-++|++|+|||.||+++++....
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~ 302 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRS 302 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCC
Confidence 4568999999999999999999996653
No 351
>PRK00625 shikimate kinase; Provisional
Probab=94.13 E-value=0.042 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988865
No 352
>PRK06762 hypothetical protein; Provisional
Probab=94.12 E-value=0.048 Score=53.47 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.+|.|+|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 353
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.10 E-value=0.22 Score=49.95 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHH
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGE 232 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 232 (1085)
++.|.|.+|+|||++|.++......++ ..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g--~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG--EPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCC--CHHHHHHH
Confidence 367899999999999998877654221 3477887654 44555444
No 354
>PRK04040 adenylate kinase; Provisional
Probab=94.08 E-value=0.048 Score=54.31 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+|+|+|++|+||||+++.+.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999998774
No 355
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.06 E-value=0.042 Score=49.05 Aligned_cols=24 Identities=50% Similarity=0.758 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 185 IGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
|-|+|.+|+|||++|+.+..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999998887663
No 356
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.04 E-value=0.15 Score=56.85 Aligned_cols=88 Identities=20% Similarity=0.367 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CCCchHHH----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE-------LSDEAEYR---- 248 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 248 (1085)
.-..++|+|..|+|||||++.+..... .+.++.+-+.+.. .+.++.++++..-+.. ..+.+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 446899999999999999999986432 3566666665543 4566666665442221 11111111
Q ss_pred --HHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 249 --RASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 249 --~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
....+.++++ +++++|+++||+..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1223334443 59999999999854
No 357
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.03 E-value=0.049 Score=54.75 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998765
No 358
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.02 E-value=0.1 Score=61.94 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=58.3
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
-+.++|.+..++.+...+... +.+.++|.+|+||||+|+.+.+.... .+++..+|..- ...+...+++.++.++|.
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 356889988888887776544 47889999999999999999987543 34677888665 445778888888876664
No 359
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.01 E-value=0.23 Score=55.86 Aligned_cols=91 Identities=21% Similarity=0.362 Sum_probs=59.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CCCchHH-----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE-------LSDEAEY----- 247 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 247 (1085)
.-..++|.|.+|+|||+|+..+...... .+-+.++++-+.... .+.++.+++...-... ..+.+..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 4468899999999999999998887653 234788888886554 5666777765432211 1111111
Q ss_pred -HHHHHHHHHHH--cCCcEEEEEeCCCC
Q 037935 248 -RRASRLYERLK--NENKILVILDNIWK 272 (1085)
Q Consensus 248 -~~~~~~~~~l~--~~~~~LlvlDdv~~ 272 (1085)
.....+.++++ +++++|+++||+..
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 12334455555 48999999999854
No 360
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.98 E-value=0.17 Score=63.24 Aligned_cols=106 Identities=18% Similarity=0.239 Sum_probs=59.2
Q ss_pred ccccchHHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALTD---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQG 231 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 231 (1085)
..++|.+..++.+.+.+.. ....++.++|+.|+|||+||+.+.+..-.. -...+-++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 4578999999998887751 123567789999999999999999865321 122333444332111111
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 232 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 232 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
.+-+|.+..-.. .+....+.+.++..-..++++|+++..
T Consensus 585 --~~l~g~~~gyvg-~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 --SKLIGSPPGYVG-YNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHhcCCCCcccC-cCccchHHHHHHhCCCeEEEECChhhC
Confidence 111222211000 011123444554344468999999765
No 361
>PRK06217 hypothetical protein; Validated
Probab=93.96 E-value=0.093 Score=52.33 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCC--CEEEEE
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREKKLF--DRVVFS 218 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f--~~~~wv 218 (1085)
.|.|.|.+|+||||+|+.+....... +| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 58999999999999999999887542 33 446663
No 362
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.31 Score=56.20 Aligned_cols=92 Identities=21% Similarity=0.311 Sum_probs=59.3
Q ss_pred ccccchHHHHHHHHHHhc----------c---CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 161 EAFESRVSTLKSIQNALT----------D---VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~----------~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
+++-|..+.++.+.+.+. . ....-|-++|++|+|||.||.++......+ +|+|..+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP---- 735 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP---- 735 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----
Confidence 345566655555555554 1 123467899999999999999998876533 4666543
Q ss_pred HHHHHHHH-HhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 228 KIQGEIAE-KLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 228 ~~~~~i~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
+++. .+|.. .+.+..++.+....++|++.+|..++.
T Consensus 736 ----ElL~KyIGaS------Eq~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 736 ----ELLSKYIGAS------EQNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred ----HHHHHHhccc------HHHHHHHHHHhhccCCeEEEecccccc
Confidence 2322 23321 223556667777799999999987653
No 363
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.91 E-value=0.24 Score=49.93 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCC--------CEEEEEEeCCC
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLF--------DRVVFSEVSQT 223 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 223 (1085)
.++.|+|.+|+||||++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 588999999999999999988876543222 25788877665
No 364
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.90 E-value=0.26 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
||.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998775
No 365
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.36 Score=49.30 Aligned_cols=93 Identities=26% Similarity=0.324 Sum_probs=59.1
Q ss_pred CCccccchHHHHHHHHHHhc-------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcC
Q 037935 159 GYEAFESRVSTLKSIQNALT-------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPD 225 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 225 (1085)
...++-|-+..+++|.+..+ -...+-|.++|.+|.|||-||++|+|..... |-.++
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRvv--------- 251 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRVV--------- 251 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhhh---------
Confidence 34456688888998888765 1245677899999999999999999987644 42221
Q ss_pred HHHHHHHHH-HHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 226 IKKIQGEIA-EKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 226 ~~~~~~~i~-~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
-.+++ +.+|.. .....++++.....-+-++++|.++.
T Consensus 252 ----GseLiQkylGdG------pklvRqlF~vA~e~apSIvFiDEIdA 289 (440)
T KOG0726|consen 252 ----GSELIQKYLGDG------PKLVRELFRVAEEHAPSIVFIDEIDA 289 (440)
T ss_pred ----hHHHHHHHhccc------hHHHHHHHHHHHhcCCceEEeehhhh
Confidence 12222 233321 22334444444456777888888754
No 366
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.86 E-value=0.1 Score=47.97 Aligned_cols=28 Identities=29% Similarity=0.251 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.-.+|.+.|.-|+||||+++.+.+....
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999999999998754
No 367
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=5.3 Score=44.32 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
|---++|++|.|||++..++++..+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC
Confidence 4567899999999999999999876
No 368
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.81 E-value=0.18 Score=53.48 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=36.8
Q ss_pred HHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHH
Q 037935 168 STLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQ 230 (1085)
Q Consensus 168 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 230 (1085)
..++++..++..+ +-|.++|.+|+|||++|+.+..... . ..+++++....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg----~-~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD----R-PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC----C-CEEEEeCCccCCHHHHh
Confidence 3455556655432 4566899999999999999987442 1 24556666655555544
No 369
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.79 E-value=0.079 Score=51.79 Aligned_cols=41 Identities=24% Similarity=0.185 Sum_probs=31.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT 223 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 223 (1085)
..++.++|+.|+|||.+|+.+.+.... +.....+-++.+.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcc
Confidence 568889999999999999999998863 12445666666553
No 370
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.79 E-value=0.07 Score=51.69 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
..++++|+|..|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45799999999999999999999887643
No 371
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.34 Score=48.19 Aligned_cols=89 Identities=22% Similarity=0.295 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHhc-------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHH
Q 037935 165 SRVSTLKSIQNALT-------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQG 231 (1085)
Q Consensus 165 gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 231 (1085)
|-|+.+++|.+.+. -.+.+-+.++|++|.|||-||++|++... +.|+.||..
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsgs-------- 215 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGS-------- 215 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechH--------
Confidence 45777777666544 13567888999999999999999998665 345777653
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 232 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 232 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
++.+.+-+. .......++--.+..-+-+|.+|.+++.
T Consensus 216 elvqk~ige-----gsrmvrelfvmarehapsiifmdeidsi 252 (404)
T KOG0728|consen 216 ELVQKYIGE-----GSRMVRELFVMAREHAPSIIFMDEIDSI 252 (404)
T ss_pred HHHHHHhhh-----hHHHHHHHHHHHHhcCCceEeeeccccc
Confidence 122111110 0111222333333467788888987653
No 372
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.72 E-value=0.15 Score=60.66 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=52.7
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
+.++|.+..++.+...+... +.+.++|++|+||||+|+.+.+..... .|..++++. ....+...+++.++..++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~-n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYP-NPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence 45789998888777776654 356699999999999999999877543 333333332 3334566668888877764
No 373
>PRK04132 replication factor C small subunit; Provisional
Probab=93.70 E-value=0.94 Score=55.45 Aligned_cols=132 Identities=11% Similarity=0.057 Sum_probs=73.5
Q ss_pred CCCCcHHHHHHHHHHHHhhccCC-CEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEe
Q 037935 190 MGGIGKTTLVKEFARQAREKKLF-DRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILD 268 (1085)
Q Consensus 190 ~~G~GKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlD 268 (1085)
+.|+||||+|.+++++.-.. .+ ..++-++++....+..+. ++++.+..... +...+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIR-EKVKEFARTKP--------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--------------cCCCCCEEEEEE
Confidence 77899999999999986322 12 236667777765555433 33332211000 001245688888
Q ss_pred CCCCcc--cccccccccCCCCCCcEEEe---------------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHH
Q 037935 269 NIWKYL--DLDTIGIPFGNDHEGYNFLI---------------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAIN 325 (1085)
Q Consensus 269 dv~~~~--~~~~~~~~~~~~~~gs~ilv---------------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 325 (1085)
+++... ..+.+...+-.-....+++. .+++.++-.+.+...+.... ..-.++....
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i~~e~L~~ 716 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LELTEEGLQA 716 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHH
Confidence 887653 33333322221111222222 88888888877776652111 1112567788
Q ss_pred HHHHhCCchHHHH
Q 037935 326 VAQACGGLPIALT 338 (1085)
Q Consensus 326 i~~~~~glPlai~ 338 (1085)
|++.++|-+..+.
T Consensus 717 Ia~~s~GDlR~AI 729 (846)
T PRK04132 717 ILYIAEGDMRRAI 729 (846)
T ss_pred HHHHcCCCHHHHH
Confidence 9999999775443
No 374
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.18 Score=54.47 Aligned_cols=86 Identities=26% Similarity=0.364 Sum_probs=59.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHc
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDE--AEYRRASRLYERLKN 259 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~ 259 (1085)
-.+|.|-|.+|+|||||.-++..+...+. .+.+|+- +-+..++ +-.++.++.+.... .....++.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsG--EES~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSG--EESLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeC--CcCHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 37899999999999999999999887653 5666544 4444443 34466676544322 122235566677777
Q ss_pred CCcEEEEEeCCCCc
Q 037935 260 ENKILVILDNIWKY 273 (1085)
Q Consensus 260 ~~~~LlvlDdv~~~ 273 (1085)
.++-++|+|-+.+.
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 89999999998654
No 375
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.67 E-value=0.37 Score=51.72 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEK 236 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 236 (1085)
-.++.|.|.+|+||||++.++......+.. ..++|+++.. +..++.+.+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g-~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHG-VRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcC-ceEEEEEccc--CHHHHHHHHHHH
Confidence 368889999999999999998876543211 3578887755 445555555444
No 376
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.63 E-value=0.21 Score=55.88 Aligned_cols=47 Identities=28% Similarity=0.187 Sum_probs=36.1
Q ss_pred ccccchHHHHHHHHHHhc-------c-------C----CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALT-------D-------V----NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~-------~-------~----~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|.+..++.+...+. . . ..+.|.++|++|+|||++|+.+.....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 457999998888766551 1 0 125799999999999999999997654
No 377
>PRK13949 shikimate kinase; Provisional
Probab=93.63 E-value=0.11 Score=50.78 Aligned_cols=25 Identities=44% Similarity=0.457 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+.|.|+|+.|+||||+++.+.+...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999999875
No 378
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.61 E-value=0.42 Score=53.70 Aligned_cols=88 Identities=20% Similarity=0.359 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CCCchHH-----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE-------LSDEAEY----- 247 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 247 (1085)
.-..++|+|..|+|||||++.+..... .+.++.+-+.... .+.++.++.+..-+.. ..+.+..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 457899999999999999999987654 3455556665443 4556665554433221 1111111
Q ss_pred -HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 248 -RRASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 248 -~~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
.....+.++++ +++++|+++||+..
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 11223344443 69999999999854
No 379
>PRK06851 hypothetical protein; Provisional
Probab=93.59 E-value=0.96 Score=49.73 Aligned_cols=43 Identities=28% Similarity=0.279 Sum_probs=33.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT 223 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 223 (1085)
+--+++.|.|.+|+||||+++.++.....+ .++..++-|-+.+
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dP 254 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDP 254 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 345889999999999999999999988654 4666665554443
No 380
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.58 E-value=0.042 Score=49.51 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 185 IGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
|-|+|.+|+||||+|+.+.......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 6789999999999999999987643
No 381
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.50 E-value=0.078 Score=49.51 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.++++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5899999999999999999888876
No 382
>PF13245 AAA_19: Part of AAA domain
Probab=93.49 E-value=0.22 Score=40.87 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=19.1
Q ss_pred CceEEEEEcCCCCcHH-HHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKT-TLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKT-tLa~~v~~~~ 206 (1085)
+-+++.|.|.+|.||| |++..+.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577889999999999 4455555544
No 383
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.43 E-value=0.15 Score=53.67 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=42.1
Q ss_pred CCccccchHHHHHH---HHHHhccC--CceEEEEEcCCCCcHHHHHHHHHHHHhhccCC
Q 037935 159 GYEAFESRVSTLKS---IQNALTDV--NVSIIGVYGMGGIGKTTLVKEFARQAREKKLF 212 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~---l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f 212 (1085)
..+.++|..+..+. |+++...+ .-+.|-|+|++|.|||+||-.+.+.....-.|
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 34678998776654 55666543 35899999999999999999999999866556
No 384
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.42 E-value=0.34 Score=58.32 Aligned_cols=84 Identities=19% Similarity=0.255 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCC------chHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD------EAEYRRASRLYE 255 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~ 255 (1085)
-+++-|+|.+|+||||||.+++...... =..++|++....++. ..++++|.+.+. .........+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 5788999999999999998876654332 256899998887774 367777765321 122222333333
Q ss_pred HHHcCCcEEEEEeCCCC
Q 037935 256 RLKNENKILVILDNIWK 272 (1085)
Q Consensus 256 ~l~~~~~~LlvlDdv~~ 272 (1085)
.+..++--|||+|-+..
T Consensus 133 lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 133 LIRSGALDIVVIDSVAA 149 (790)
T ss_pred HhhcCCCeEEEEcchhh
Confidence 34456777899998753
No 385
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.38 E-value=0.095 Score=55.32 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
+.|.|.|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999997765
No 386
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.38 E-value=0.21 Score=51.05 Aligned_cols=65 Identities=23% Similarity=0.298 Sum_probs=38.8
Q ss_pred HHHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHH
Q 037935 169 TLKSIQNALT--DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEI 233 (1085)
Q Consensus 169 ~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 233 (1085)
...++++.+. .++..+|+|.|.+|+|||||.-.+......+++=-.++=|+=|.+++--.++.+-
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDR 80 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDR 80 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--G
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccH
Confidence 3445555554 4567899999999999999999998887765433334445556667655555443
No 387
>PRK08149 ATP synthase SpaL; Validated
Probab=93.36 E-value=0.24 Score=55.50 Aligned_cols=88 Identities=16% Similarity=0.298 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCC-------CCCchHH-----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLE-------LSDEAEY----- 247 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~----- 247 (1085)
+-..++|+|..|+|||||++.++.... -+.++...+.. ..++.++..+........ ..+.+..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 446899999999999999998887443 34444444433 345666666666543321 1111111
Q ss_pred -HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 248 -RRASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 248 -~~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
.....+.++++ ++|++|+++||+..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 11223334443 59999999999854
No 388
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.32 E-value=0.55 Score=53.06 Aligned_cols=91 Identities=23% Similarity=0.388 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-cCHHHHHHHHHHHhCCC-------CCCchHHH----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLE-------LSDEAEYR---- 248 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 248 (1085)
.-..++|.|.+|+|||||+..+......+. =+.++++-+... ..+.++.+++...-... ..+.+...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 446899999999999999999887765432 246777777554 45677777776542221 11111111
Q ss_pred --HHHHHHHHHH--cCCcEEEEEeCCCC
Q 037935 249 --RASRLYERLK--NENKILVILDNIWK 272 (1085)
Q Consensus 249 --~~~~~~~~l~--~~~~~LlvlDdv~~ 272 (1085)
....+.++++ +++++|+++|++..
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1223444442 58999999999854
No 389
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.30 E-value=0.58 Score=56.55 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
+-|.++|++|+|||++|+.+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45899999999999999999887654
No 390
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.29 E-value=0.13 Score=56.25 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=39.4
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
..++|.+..+..++-.+.+....-+.|.|..|+||||+++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3478999999888777777777888899999999999999998654
No 391
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.29 E-value=0.05 Score=29.87 Aligned_cols=15 Identities=53% Similarity=0.718 Sum_probs=5.6
Q ss_pred cceEEEecCCcccCC
Q 037935 542 KLRVVDLTRVRLFSL 556 (1085)
Q Consensus 542 ~Lr~L~Ls~~~i~~l 556 (1085)
+|++|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 392
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.27 E-value=0.065 Score=52.97 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 393
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.25 E-value=0.065 Score=50.65 Aligned_cols=20 Identities=40% Similarity=0.684 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 037935 184 IIGVYGMGGIGKTTLVKEFA 203 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~ 203 (1085)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 394
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.25 E-value=0.46 Score=50.25 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=30.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ 222 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 222 (1085)
.-+++.|.|.+|+|||++|.++......+ =..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 34799999999999999999986654322 23577888764
No 395
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.21 E-value=0.24 Score=56.79 Aligned_cols=85 Identities=25% Similarity=0.325 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHc
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDE--AEYRRASRLYERLKN 259 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~ 259 (1085)
-.++.|.|.+|+|||||+.++......+ =..++|++.... ..++.. .++.++...... .....+..+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4699999999999999999998876532 235788876543 333322 245555422110 000112334444444
Q ss_pred CCcEEEEEeCCC
Q 037935 260 ENKILVILDNIW 271 (1085)
Q Consensus 260 ~~~~LlvlDdv~ 271 (1085)
.+.-++|+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 455677888764
No 396
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.21 E-value=0.16 Score=54.55 Aligned_cols=78 Identities=21% Similarity=0.382 Sum_probs=55.0
Q ss_pred ccccchHHHHHHHHHHhc------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeC----CCc---CHH
Q 037935 161 EAFESRVSTLKSIQNALT------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVS----QTP---DIK 227 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~---~~~ 227 (1085)
..|+|.++.++++++.+. +..-+|+.++|+.|.||||+|+.+.+-.+. | .+|.-.. ..+ =+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCH
Confidence 468999999999999886 345689999999999999999999887764 2 3332221 111 134
Q ss_pred HHHHHHHHHhCCCCCC
Q 037935 228 KIQGEIAEKLGLELSD 243 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~ 243 (1085)
+.-+.+.+.++.....
T Consensus 136 ~~r~~~~~~~~~~i~g 151 (358)
T PF08298_consen 136 ELRREFEDELGIRIEG 151 (358)
T ss_pred hHHHHHHHHhCcccCC
Confidence 5555666677664433
No 397
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.18 E-value=0.12 Score=56.27 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=41.0
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|.++.+..+...+.+..++-|.|.|..|+||||+|+.+++-..
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45799999999888888888888888999999999999999987654
No 398
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.14 E-value=0.065 Score=54.34 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
+|+|.|.+|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 399
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.13 E-value=0.078 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+++|+|+.|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 400
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.11 E-value=0.38 Score=52.31 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 185 IGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
+.+.|++|+||||+++.+.+.......+ .+.+++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~ 36 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITY 36 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEcc
Confidence 5789999999999999999887633223 2444444
No 401
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.10 E-value=0.25 Score=52.13 Aligned_cols=24 Identities=42% Similarity=0.685 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 185 IGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
|.++|.+|+||||+|+.+......
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999987754
No 402
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.05 E-value=0.091 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...|.|+|++|+||||+|+.+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999874
No 403
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.04 E-value=0.11 Score=51.46 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
...+|.|+|.+|+||||+|+.+......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999998754
No 404
>PRK13768 GTPase; Provisional
Probab=93.04 E-value=0.6 Score=49.14 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
..++.|.|.+|+||||++..+......++ ..++.|+.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~ 38 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNL 38 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcC--CceEEEEC
Confidence 35789999999999999999888776432 23444544
No 405
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.99 E-value=0.38 Score=54.92 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=53.4
Q ss_pred HHHHhc-cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEE-EEeCCCc-CHHHHHHHHHHHhCC-CCCCchH--
Q 037935 173 IQNALT-DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVF-SEVSQTP-DIKKIQGEIAEKLGL-ELSDEAE-- 246 (1085)
Q Consensus 173 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~-~~~~~~~~i~~~l~~-~~~~~~~-- 246 (1085)
+++.+. -+.-....|+|.+|+|||||++.+.+.... .+-++.++ +-|.+.. .+.++.+.+--++-. ..+....
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 444444 234467889999999999999999986643 22344433 3333332 344443333111111 1111111
Q ss_pred ---HHHHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 247 ---YRRASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 247 ---~~~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
........+++. .++.+||++|++..
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 112223334443 69999999999853
No 406
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.99 E-value=0.21 Score=51.71 Aligned_cols=64 Identities=28% Similarity=0.377 Sum_probs=46.4
Q ss_pred HHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHH
Q 037935 171 KSIQNALT--DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 171 ~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
.+++..+. .++..+|+|.|.+|+||+||.-.+......++|=-.++=|+-|.+++--.++.+=+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 34555444 56778999999999999999999999887666544455566677777666555443
No 407
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.99 E-value=0.079 Score=50.68 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+|.|+|..|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 408
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.99 E-value=0.14 Score=49.16 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEE
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVF 217 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w 217 (1085)
|++|+|+.|+||||++..+....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 58999999999999999999987654 3544443
No 409
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.96 E-value=0.6 Score=48.77 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhhccCCCEE-EEEEeCCC-cCHHHHHHHHHHHhCCC-------CCCchHHH--
Q 037935 181 NVSIIGVYGMGGIGKTTLV-KEFARQAREKKLFDRV-VFSEVSQT-PDIKKIQGEIAEKLGLE-------LSDEAEYR-- 248 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~-- 248 (1085)
+-..++|.|.+|+|||+|| ..+.+.. +-+.+ +++-+.+. ..+.++.+++...-... ..+++...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3467899999999999996 5565542 23444 56666554 35666766666432111 11111111
Q ss_pred ----HHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 249 ----RASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 249 ----~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
....+.++++ +++.+|+|+||+..
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 1223333333 58999999999854
No 410
>PRK15453 phosphoribulokinase; Provisional
Probab=92.94 E-value=0.62 Score=48.73 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+..+|+|.|.+|+||||+|+.+.+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987654
No 411
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.93 E-value=0.082 Score=53.00 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.-.+++|+|.+|+|||||++.+.--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 457999999999999999999986554
No 412
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.92 E-value=0.94 Score=47.75 Aligned_cols=128 Identities=18% Similarity=0.259 Sum_probs=67.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc-CHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 259 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 259 (1085)
+..+++++|..|+||||+++.+......++ ..+.+++..... ....-++..++.++.+.....+...+....+.+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999998877654321 245666653221 22222333444444433222222233444444532
Q ss_pred -CCcEEEEEeCCCCc----ccccccccccCCCCCCcEEEe-c-CCCHHHHHHHHHHhc
Q 037935 260 -ENKILVILDNIWKY----LDLDTIGIPFGNDHEGYNFLI-G-NLSEEEAWRLFKIMN 310 (1085)
Q Consensus 260 -~~~~LlvlDdv~~~----~~~~~~~~~~~~~~~gs~ilv-~-~l~~~~~~~lf~~~~ 310 (1085)
.+.=++++|..-.. ..++++...+....+...++| . ....+++.+.++...
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhC
Confidence 34567888876433 223333222222222234544 3 345667777666544
No 413
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.92 E-value=2.1 Score=47.51 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=86.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHH----------HhCC---CC-----C
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAE----------KLGL---EL-----S 242 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~----------~l~~---~~-----~ 242 (1085)
....+.|||..|.|||-|++++.+..... ......+.++...-..++..++.. ++.. ++ .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC
Confidence 36799999999999999999999987754 332222333322211222222211 1100 00 0
Q ss_pred CchHHHHHHHHHHHHHcCCcEEEEEeCCCCcccccccccccCC-CCCCcEEEecCCCHHHHHHHHHHhcCCCCCCCCchH
Q 037935 243 DEAEYRRASRLYERLKNENKILVILDNIWKYLDLDTIGIPFGN-DHEGYNFLIGNLSEEEAWRLFKIMNGDDVENCKFKP 321 (1085)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~~~~~~~~~~~-~~~gs~ilv~~l~~~~~~~lf~~~~~~~~~~~~~~~ 321 (1085)
.....+.+=.....+....+.+++-.|-+- .+|..+...+.. ..-|-.+-|.|.+.+.-..++..++.... ..--++
T Consensus 190 k~~~qeefFh~FN~l~~~~kqIvltsdr~P-~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~-~~i~~e 267 (408)
T COG0593 190 KERTQEEFFHTFNALLENGKQIVLTSDRPP-KELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG-IEIPDE 267 (408)
T ss_pred ChhHHHHHHHHHHHHHhcCCEEEEEcCCCc-hhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC-CCCCHH
Confidence 111122233334444433334444444322 222222111110 12345555699999999999888763211 111244
Q ss_pred HHHHHHHHhCC----chHHHHHHHHHHh--cC--CHHHHHHHHHHhcCC
Q 037935 322 TAINVAQACGG----LPIALTTVARALR--NK--SLHEWKNALRELQTP 362 (1085)
Q Consensus 322 ~~~~i~~~~~g----lPlai~~~~~~l~--~~--~~~~w~~~~~~l~~~ 362 (1085)
+..-|++.... +.-|+..+..+-. ++ +...-+++++.+...
T Consensus 268 v~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 268 VLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcc
Confidence 55555555443 3344444333322 22 666667777654433
No 414
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.91 E-value=0.73 Score=52.13 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhh-----ccCCCEEEEEEeCCCcCHHHHHHHHHHHhC-CCC-------CCchH
Q 037935 181 NVSIIGVYGMGGIGKTTLV-KEFARQARE-----KKLFDRVVFSEVSQTPDIKKIQGEIAEKLG-LEL-------SDEAE 246 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~-------~~~~~ 246 (1085)
.-..++|.|..|+|||+|| -.+.+.... .++-+.++++-+.+...--.-+.+.+++-+ ... .+++.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4467899999999999997 556665422 123457788888776543332444444433 111 11111
Q ss_pred H-H-----HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 037935 247 Y-R-----RASRLYERLK-NENKILVILDNIWKY 273 (1085)
Q Consensus 247 ~-~-----~~~~~~~~l~-~~~~~LlvlDdv~~~ 273 (1085)
. . ....+.++++ +++.+|+|+||+..-
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1 1 1222333332 589999999998643
No 415
>PRK13947 shikimate kinase; Provisional
Probab=92.91 E-value=0.081 Score=52.19 Aligned_cols=25 Identities=36% Similarity=0.316 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
-|.|+|++|+||||+|+.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998753
No 416
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.90 E-value=0.087 Score=52.13 Aligned_cols=25 Identities=40% Similarity=0.695 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
+|+|.|.+|+||||+|+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988753
No 417
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=0.009 Score=57.57 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=33.4
Q ss_pred HhhhhceeeeeccccccccCCCCcccccCccEEEeccccCccc
Q 037935 943 IFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMN 985 (1085)
Q Consensus 943 ~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~ 985 (1085)
..++|+.|+|++|+++++.--.++..+++|+.|.|.+-+...+
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 4688999999999998877555677888899998877554443
No 418
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.87 E-value=0.32 Score=47.38 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=30.6
Q ss_pred ccchHHHHHHHHHHhc---cCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 163 FESRVSTLKSIQNALT---DVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 163 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
++|.+..++++.+.+. ... .-|.|+|..|+||+.+|+.+++...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~-~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD-LPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST-S-EEEECSTTSSHHHHHHHHHHCST
T ss_pred CEeCCHHHHHHHHHHHHHhCCC-CCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 3566667777766654 233 4556999999999999999999543
No 419
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.85 E-value=0.74 Score=46.48 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
..|+|.|..|+||||+++.+.+.....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999987754
No 420
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.84 E-value=0.47 Score=49.13 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
+|+|.|.+|+||||+++.+.+..+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999987754
No 421
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.83 E-value=0.32 Score=55.74 Aligned_cols=86 Identities=24% Similarity=0.326 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHc
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDE--AEYRRASRLYERLKN 259 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~ 259 (1085)
-.++.|.|.+|+|||||+.++......++ ..++|++.... ..++.. -++.++...... ........+.+.+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 47999999999999999999977664332 35778776543 333322 233444321100 000112334444444
Q ss_pred CCcEEEEEeCCCC
Q 037935 260 ENKILVILDNIWK 272 (1085)
Q Consensus 260 ~~~~LlvlDdv~~ 272 (1085)
.+.-++|+|.+..
T Consensus 169 ~~~~~vVIDSIq~ 181 (454)
T TIGR00416 169 ENPQACVIDSIQT 181 (454)
T ss_pred cCCcEEEEecchh
Confidence 4556778887643
No 422
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.83 E-value=0.22 Score=53.61 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=37.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGE 232 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 232 (1085)
.+++.+.|.|||||||+|.+..-.....+ ..++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999998766665443 44777777777776666554
No 423
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.17 Score=58.66 Aligned_cols=93 Identities=22% Similarity=0.247 Sum_probs=57.4
Q ss_pred ccccchHHHHHH---HHHHhccC---------CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHH
Q 037935 161 EAFESRVSTLKS---IQNALTDV---------NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKK 228 (1085)
Q Consensus 161 ~~~~gr~~~~~~---l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 228 (1085)
.++.|.|+.+++ +++.|.+. =.+-+..+|++|.|||.||+++.-+..+. | .+.|...-+
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~FV-- 220 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSDFV-- 220 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchhhh--
Confidence 456787776655 55566532 13678899999999999999999988875 3 222221000
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 229 IQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 229 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
++.- +.. ..++..+..+-+++-++++++|.++..
T Consensus 221 ---emfV--GvG------AsRVRdLF~qAkk~aP~IIFIDEiDAv 254 (596)
T COG0465 221 ---EMFV--GVG------ASRVRDLFEQAKKNAPCIIFIDEIDAV 254 (596)
T ss_pred ---hhhc--CCC------cHHHHHHHHHhhccCCCeEEEehhhhc
Confidence 0110 111 223445555555677899999988654
No 424
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.80 E-value=0.39 Score=46.75 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCH
Q 037935 185 IGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDI 226 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 226 (1085)
+.|.|.+|.|||++|.++.... ...++++.-.+.++.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~ 38 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD 38 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH
Confidence 6789999999999999987652 235667766666654
No 425
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.79 E-value=0.28 Score=50.92 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=31.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhc-cCCCEEEEEEeCCCcCHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREK-KLFDRVVFSEVSQTPDIKKIQGE 232 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~ 232 (1085)
-+++.|.|.+|+|||++|.++....-.+ + +.++||+...+ ..++.+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~g--e~vlyvs~ee~--~~~l~~~ 66 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFG--EKVLYVSFEEP--PEELIEN 66 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS---HHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcC--CcEEEEEecCC--HHHHHHH
Confidence 4799999999999999998866544322 1 35778887554 3444444
No 426
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.77 E-value=0.11 Score=49.58 Aligned_cols=29 Identities=31% Similarity=0.652 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhcc
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKK 210 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~ 210 (1085)
.+|++|+|+.|.|||||...+....+.++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 47999999999999999999999888664
No 427
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.75 E-value=0.37 Score=53.96 Aligned_cols=92 Identities=22% Similarity=0.289 Sum_probs=59.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhcc--CCC---------EEEEEEeCCCcCHHHHHHHHHHHhC-CCC-------
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKK--LFD---------RVVFSEVSQTPDIKKIQGEIAEKLG-LEL------- 241 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~------- 241 (1085)
.-..++|.|.+|+|||||+..+.+..+.-. -.| .++++-+.+.....+.+.+.+..-+ ...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 446889999999999999999988765100 012 5677777877777776666666655 211
Q ss_pred CCchHHH------HHHHHHHHHH--cCCcEEEEEeCCCC
Q 037935 242 SDEAEYR------RASRLYERLK--NENKILVILDNIWK 272 (1085)
Q Consensus 242 ~~~~~~~------~~~~~~~~l~--~~~~~LlvlDdv~~ 272 (1085)
.+.+... ....+.++++ +++++|+++||+..
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1111111 1233445555 58999999999853
No 428
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.75 E-value=0.24 Score=54.75 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=49.7
Q ss_pred ccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHH
Q 037935 163 FESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 163 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
++|++..+..+...+..+ +.+-+.|.+|+|||++|+.+....... .++|.+.......++.....
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~~-----~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGLP-----FVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecCCCCCHHHhcCchh
Confidence 788888888877766543 567899999999999999999987632 46677777777776655543
No 429
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=92.75 E-value=0.16 Score=55.03 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT 223 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 223 (1085)
+.++|+|+|-||+||||.+..+....... .+ .+.-|+.-..
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~-g~-kVLliD~D~q 43 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEM-GQ-KILIVGCDPK 43 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHC-CC-eEEEEecccc
Confidence 45789999999999999999887766544 23 3555555443
No 430
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.72 E-value=0.34 Score=53.61 Aligned_cols=77 Identities=22% Similarity=0.303 Sum_probs=48.8
Q ss_pred ccccchHHHHHHHHHHhcc--------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhcc-CCCEEEEEEeC-CCc
Q 037935 161 EAFESRVSTLKSIQNALTD--------------VNVSIIGVYGMGGIGKTTLVKEFARQAREKK-LFDRVVFSEVS-QTP 224 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~~wv~~~-~~~ 224 (1085)
..++|.+..++.+..++.. ...+.|.++|++|+|||++|+.+.......- +++..-|.... ...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 4578999888888776632 0136789999999999999999999875320 11222222211 122
Q ss_pred CHHHHHHHHHHHh
Q 037935 225 DIKKIQGEIAEKL 237 (1085)
Q Consensus 225 ~~~~~~~~i~~~l 237 (1085)
+...+.+.+....
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 5556666665544
No 431
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.72 E-value=0.13 Score=52.59 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=27.5
Q ss_pred HhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 176 ALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 176 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+.+.++++|+++|..|+|||||.+++.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34467899999999999999999999988754
No 432
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.72 E-value=0.42 Score=53.73 Aligned_cols=89 Identities=20% Similarity=0.280 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCC------CCCchHH------H
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE------LSDEAEY------R 248 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~------~ 248 (1085)
.-..++|+|..|+|||||++.+...... ...++|..-....++.++....+...... ..+.+.. .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 3468999999999999999988764331 22344443223445555544444332110 1111111 1
Q ss_pred HHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 249 RASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 249 ~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
....+.++++ +++++|+++||+..
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHH
Confidence 1223334443 59999999999854
No 433
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.70 E-value=0.1 Score=51.68 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
++|.+.|++|+||||+|+.+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 434
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.69 E-value=0.067 Score=29.37 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=9.8
Q ss_pred ccccEEeccCcccccccc
Q 037935 564 TKLRMLDLTDCLQLKFIV 581 (1085)
Q Consensus 564 ~~L~~L~Ls~~~~l~~lp 581 (1085)
++|+.|++++| +++++|
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 46788888888 677765
No 435
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.65 E-value=0.52 Score=53.48 Aligned_cols=92 Identities=24% Similarity=0.289 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCC--EEEEEEeCCC-cCHHHHHHHHHHHhCCCC-------CCchH----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFD--RVVFSEVSQT-PDIKKIQGEIAEKLGLEL-------SDEAE---- 246 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~---- 246 (1085)
.-..++|.|..|+|||||+..+.+.....+.+. .++++-+.+. ..+.++.+++...=.... .+.+.
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 346789999999999999999988765321111 5666667554 456777777764332211 11111
Q ss_pred --HHHHHHHHHHHH--cCCcEEEEEeCCCC
Q 037935 247 --YRRASRLYERLK--NENKILVILDNIWK 272 (1085)
Q Consensus 247 --~~~~~~~~~~l~--~~~~~LlvlDdv~~ 272 (1085)
......+.++++ +++++|+++||+..
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 112334555665 59999999999854
No 436
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.63 E-value=0.17 Score=48.28 Aligned_cols=34 Identities=21% Similarity=0.481 Sum_probs=28.0
Q ss_pred HHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 170 LKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 170 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
++++.+++.+ ++++++|..|||||||...+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5566777643 899999999999999999998754
No 437
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.62 E-value=0.14 Score=51.13 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
.++|.|+|+.|+|||||++.+...... +|..+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~--~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD--KFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT--TEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc--ccccceeecc
Confidence 478999999999999999999998763 3755555444
No 438
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.62 E-value=0.15 Score=55.44 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=37.9
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
..++|.+..++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4578999998888766555556679999999999999999997754
No 439
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.62 E-value=0.52 Score=54.96 Aligned_cols=54 Identities=28% Similarity=0.370 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
.-.++.|.|.+|+|||||+.++......++ +.+++++... +..++.+.+ +.++.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~g--e~~~y~s~eE--s~~~i~~~~-~~lg~ 315 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANK--ERAILFAYEE--SRAQLLRNA-YSWGI 315 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeC--CHHHHHHHH-HHcCC
Confidence 347999999999999999999888764332 4566666544 455555553 45553
No 440
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.62 E-value=0.11 Score=47.59 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 037935 185 IGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987543
No 441
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.56 E-value=0.28 Score=51.30 Aligned_cols=35 Identities=34% Similarity=0.377 Sum_probs=22.5
Q ss_pred HHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 170 LKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 170 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.+.+..++... .+..|+|++|.||||++..+....
T Consensus 7 ~~Ai~~~~~~~--~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALSSN--GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCTSS--E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCEEEECCCCCChHHHHHHHHHHh
Confidence 34444444332 278899999999998777776665
No 442
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.53 E-value=0.11 Score=45.52 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFA 203 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~ 203 (1085)
-..++|+|.+|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4789999999999999999986
No 443
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.52 E-value=0.91 Score=48.96 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=41.1
Q ss_pred HHHHhc-cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-cCHHHHHHHHH
Q 037935 173 IQNALT-DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-PDIKKIQGEIA 234 (1085)
Q Consensus 173 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~ 234 (1085)
+++.+. -.+-..++|.|..|+|||+|++++.+... -+.++++-+.+. ..+.++++++-
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHH
Confidence 444443 13346899999999999999999988543 467888888664 34666666653
No 444
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.51 E-value=0.46 Score=51.56 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=26.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 179 DVNVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 179 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
.+...+|+|+|.+|+||||++..+......+
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3567899999999999999999998876543
No 445
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.51 E-value=0.18 Score=58.43 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 167 VSTLKSIQNALTD-----VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 167 ~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
.+-++++..||.+ ...+++.+.|++|+||||.++.++++.. |+.+=|.+-
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 4456777777762 2357899999999999999999999875 777778643
No 446
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.49 E-value=0.41 Score=51.45 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=41.2
Q ss_pred ccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHH
Q 037935 163 FESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQG 231 (1085)
Q Consensus 163 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 231 (1085)
++=.......++.++.. -+.|.|.|.+|+||||+|+.++...... .+.|.++...+..++..
T Consensus 47 y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~DliG 108 (327)
T TIGR01650 47 YLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLVG 108 (327)
T ss_pred ccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcCC
Confidence 43333445566666653 2569999999999999999999987632 23556665555544433
No 447
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.48 E-value=0.19 Score=53.44 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=40.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
.-+++.|+|.+|+|||++|.++....... ...++||+.... ...+.+...+ ++-
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 45899999999999999999988877644 778999988663 4444444433 543
No 448
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.48 E-value=0.66 Score=48.84 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=64.8
Q ss_pred cccchHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCH-HHHHHHHHHH
Q 037935 162 AFESRVSTLKSIQNALT----DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDI-KKIQGEIAEK 236 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~ 236 (1085)
.++|-.++..++-.++. .+...-+.|+|+.|.|||+|.-.+..+.+ ..=+..+-|........ +-.++.|.++
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q--~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ--ENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH--hcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 46777777777777665 34566788999999999999988877722 11133444555544322 2244555554
Q ss_pred hCC----CCC-CchHHHHHHHHHHHHH-----cCCcEEEEEeCCCCc
Q 037935 237 LGL----ELS-DEAEYRRASRLYERLK-----NENKILVILDNIWKY 273 (1085)
Q Consensus 237 l~~----~~~-~~~~~~~~~~~~~~l~-----~~~~~LlvlDdv~~~ 273 (1085)
+.. ... ..+-.+.+..+...++ .+.+++.|+|+++..
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf 149 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLF 149 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcc
Confidence 432 111 1122333555555555 245688888887643
No 449
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.46 E-value=0.096 Score=50.32 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
++.|+|.+|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 450
>PRK13695 putative NTPase; Provisional
Probab=92.39 E-value=0.19 Score=49.66 Aligned_cols=34 Identities=38% Similarity=0.486 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEE
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFS 218 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv 218 (1085)
.|+|+|.+|+|||||++.+++..... .+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 47899999999999999998876542 35444444
No 451
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.37 E-value=0.098 Score=52.09 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
++|+|+|+.|+||||+++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998853
No 452
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.37 E-value=0.58 Score=50.63 Aligned_cols=88 Identities=22% Similarity=0.400 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeC-CCcCHHHHHHHHHHHhCCC-------CCCchHH-----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVS-QTPDIKKIQGEIAEKLGLE-------LSDEAEY----- 247 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~----- 247 (1085)
.-..++|+|..|+|||||.+.+...... +..+..-+. ...++.++..+....-+.. ..+.+..
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 3468899999999999999988875432 333333333 3345666666665543221 1111111
Q ss_pred -HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 248 -RRASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 248 -~~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
.......++++ ++|.+|+++||+..
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 11222333332 59999999999754
No 453
>PRK14530 adenylate kinase; Provisional
Probab=92.36 E-value=0.12 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+.|.|+|++|+||||+|+.+.....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 454
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.35 E-value=0.69 Score=52.10 Aligned_cols=91 Identities=22% Similarity=0.377 Sum_probs=58.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-cCHHHHHHHHHHHhCCC-------CCCchHH-----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLE-------LSDEAEY----- 247 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~----- 247 (1085)
.-..++|.|.+|+|||||+..+........ =+.++++-+... ..+.++++++...-... ..+.+..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 446899999999999999999888765321 246777777554 45677777775432211 1112111
Q ss_pred -HHHHHHHHHHH--cCCcEEEEEeCCCC
Q 037935 248 -RRASRLYERLK--NENKILVILDNIWK 272 (1085)
Q Consensus 248 -~~~~~~~~~l~--~~~~~LlvlDdv~~ 272 (1085)
.....+.++++ +++++|+++||+..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 12334445554 47999999999854
No 455
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.32 E-value=0.62 Score=52.36 Aligned_cols=88 Identities=20% Similarity=0.404 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc-CHHHHHHHHHHHhCCC-------CCCchHHH----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE-------LSDEAEYR---- 248 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 248 (1085)
+-..++|.|..|+|||||.+.+++... -+.++.+-+.+.. .+.++.+..+..-+.. ..+.+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 456899999999999999999988654 3567777776543 4555555544322211 11111111
Q ss_pred --HHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 249 --RASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 249 --~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
....+.++++ +++++|+++||+..
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223344443 59999999999854
No 456
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.31 E-value=0.12 Score=55.51 Aligned_cols=40 Identities=30% Similarity=0.474 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP 224 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 224 (1085)
+.|+|+|-|||||||++..+......++ + .++-|+.-...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q~ 40 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPKA 40 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCCC
Confidence 4789999999999999999998877543 3 34445554333
No 457
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.27 E-value=0.12 Score=49.83 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 037935 185 IGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999988764
No 458
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.36 Score=50.07 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
..+.+.|||++|.|||.+|+.|+....+.
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 34789999999999999999999988765
No 459
>PRK14529 adenylate kinase; Provisional
Probab=92.20 E-value=0.4 Score=48.85 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 185 IGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
|.|.|++|+||||+|+.+......
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 788999999999999999988764
No 460
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.17 E-value=0.12 Score=52.33 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+|+|+|++|+|||||.+.+.--.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44799999999999999999997643
No 461
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.15 E-value=0.26 Score=53.37 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQ 230 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 230 (1085)
+++.+.|-|||||||+|.+..-....++ ..+.-|+.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 6889999999999999988777665443 235556665554444443
No 462
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.14 E-value=1.3 Score=48.40 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.-+.++|+.|+||||+|+.+....-
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHc
Confidence 4678999999999999999988753
No 463
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.12 E-value=0.41 Score=47.86 Aligned_cols=23 Identities=43% Similarity=0.557 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFAR 204 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~ 204 (1085)
..+|+|+|+.|+||||+|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999999877
No 464
>PRK05922 type III secretion system ATPase; Validated
Probab=92.11 E-value=0.63 Score=52.25 Aligned_cols=88 Identities=20% Similarity=0.353 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCC-------CCchHH-----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLEL-------SDEAEY----- 247 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~----- 247 (1085)
.-..++|+|..|+|||||.+.+..... .+....+-+.. .......+.+......... .+.+..
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 446799999999999999999987543 23333333433 2334455555544332211 111111
Q ss_pred -HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 248 -RRASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 248 -~~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
.....+.++++ +++++|+++||+..
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12233444443 69999999999854
No 465
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.11 E-value=0.11 Score=48.80 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998864
No 466
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=92.10 E-value=0.17 Score=59.49 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
++++|.+..++.+...+......-+.|+|.+|+|||++|+.+++..+
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 45899999998888777655556778999999999999999987643
No 467
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.10 E-value=0.14 Score=50.34 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+.|.|+|+.|+||||+|+.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35699999999999999999998764
No 468
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.08 E-value=0.15 Score=51.06 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..+|.|.|.+|+||||+|+.+.....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998753
No 469
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.05 E-value=0.13 Score=52.40 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
...+|+|+|+.|+|||||++.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34789999999999999999999864
No 470
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=92.03 E-value=0.58 Score=53.23 Aligned_cols=89 Identities=13% Similarity=0.237 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHHHhhccCCCE-EEEEEeCCC-cCHHHHHHHHHHHhCCCC-------CCchHHH--
Q 037935 181 NVSIIGVYGMGGIGKTTLV-KEFARQAREKKLFDR-VVFSEVSQT-PDIKKIQGEIAEKLGLEL-------SDEAEYR-- 248 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~-- 248 (1085)
.-..++|.|..|+|||||| ..+.+... -|. ++++-+.+. ..+.++.+.+...=.... .+.+...
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~~----~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQKG----RNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhcC----CCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 4468899999999999997 46766532 454 677888765 456777777765432211 1111111
Q ss_pred ----HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 037935 249 ----RASRLYERLK-NENKILVILDNIWKY 273 (1085)
Q Consensus 249 ----~~~~~~~~l~-~~~~~LlvlDdv~~~ 273 (1085)
....+.++++ +++++|+|+||+...
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 1223334443 699999999998643
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.01 E-value=0.12 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997754
No 472
>PRK13236 nitrogenase reductase; Reviewed
Probab=92.01 E-value=0.17 Score=54.75 Aligned_cols=31 Identities=39% Similarity=0.570 Sum_probs=26.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 179 DVNVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 179 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
+++.++|++.|-|||||||+|..+..-...+
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~ 33 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEM 33 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHC
Confidence 5678999999999999999999888776653
No 473
>PRK13975 thymidylate kinase; Provisional
Probab=92.00 E-value=0.15 Score=51.68 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.+|+|.|+.|+||||+|+.+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998763
No 474
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=91.99 E-value=0.65 Score=52.68 Aligned_cols=91 Identities=23% Similarity=0.354 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc-CHHHHHHHHHHHhCCC--------------CCCch
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE--------------LSDEA 245 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------------~~~~~ 245 (1085)
.-..++|.|.+|+|||+|+..+....... +=+.++++-+.+.. .+.++..++...-... ..+.+
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 44689999999999999999888773321 12778888886654 5677777776511110 01111
Q ss_pred HH------HHHHHHHHHHHc-C-CcEEEEEeCCCC
Q 037935 246 EY------RRASRLYERLKN-E-NKILVILDNIWK 272 (1085)
Q Consensus 246 ~~------~~~~~~~~~l~~-~-~~~LlvlDdv~~ 272 (1085)
.. .....+.++++. + +++||++||+..
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 11 123345566652 4 499999999854
No 475
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.93 E-value=0.49 Score=53.14 Aligned_cols=88 Identities=24% Similarity=0.426 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-cCHHHHHHHHHHHhCCC-------CCCchHH-----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLE-------LSDEAEY----- 247 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~----- 247 (1085)
.-..++|+|..|+|||||.+.+..... .+..+.+.+... ..+.++.+.....-... ..+.+..
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 446799999999999999998886543 234444445443 34555555544332111 1111111
Q ss_pred -HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 248 -RRASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 248 -~~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
.....+.++++ +++++|+++||+..
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 11223344443 58999999999853
No 476
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.90 E-value=0.14 Score=49.11 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
+-|.++||.|+||||+.+.+++.....
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLP 29 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCC
Confidence 357899999999999999999887643
No 477
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.89 E-value=0.16 Score=52.08 Aligned_cols=27 Identities=37% Similarity=0.646 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
++|+|.|-||+||||++..+.......
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 479999999999999999988877654
No 478
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=91.85 E-value=0.34 Score=48.76 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=28.1
Q ss_pred HHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 173 IQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 173 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
.+..+...+-+++.|.|.+|+||||+++.+.......
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3333333445789999999999999999998877654
No 479
>PRK09099 type III secretion system ATPase; Provisional
Probab=91.84 E-value=0.49 Score=53.40 Aligned_cols=90 Identities=20% Similarity=0.327 Sum_probs=52.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCC-------CCCchHH-----
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE-------LSDEAEY----- 247 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~----- 247 (1085)
.+-..++|.|..|+|||||++.+....... ..+++..=.+...+.++.+.+...-+.. ..+.+..
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 345789999999999999999998754321 1233333233445666666665442221 1111111
Q ss_pred -HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 248 -RRASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 248 -~~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
.....+.++++ +++++|+++||+..
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11223344443 68999999999854
No 480
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.83 E-value=0.44 Score=48.29 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998763
No 481
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.81 E-value=0.17 Score=49.33 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 185 IGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
|.|.|.+|+||||+++.+++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998753
No 482
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.81 E-value=0.25 Score=49.97 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
....+|+|+|.+|+||||+|+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999998764
No 483
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.77 E-value=0.14 Score=47.53 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
+.|.++|..|+|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 568899999999999999997754
No 484
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=91.75 E-value=0.61 Score=52.45 Aligned_cols=90 Identities=18% Similarity=0.338 Sum_probs=48.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCC-------CCCch------
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLE-------LSDEA------ 245 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~------ 245 (1085)
..-..++|+|..|+|||||++.+..... .+..+..-+.. ..++.++..+.+.+-+.. ..+.+
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 3457899999999999999998877543 23332222322 223444443433332221 11111
Q ss_pred HHHHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 037935 246 EYRRASRLYERLK-NENKILVILDNIWKY 273 (1085)
Q Consensus 246 ~~~~~~~~~~~l~-~~~~~LlvlDdv~~~ 273 (1085)
....+..+.+... +++++|+++||+...
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecchhHH
Confidence 1111222222222 589999999998543
No 485
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=91.73 E-value=0.68 Score=52.74 Aligned_cols=91 Identities=26% Similarity=0.350 Sum_probs=58.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhc---cCCCEEEEEEeCCC-cCHHHHHHHHHHHhCCC-------CCCchHH--
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREK---KLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLE-------LSDEAEY-- 247 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~-- 247 (1085)
.-..++|.|..|+|||+|+..+.+..... ..+ .++++-+.+. ..+.++.+++...=... ..+.+..
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R 220 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIER 220 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHH
Confidence 34678999999999999999998876532 112 5667777654 45677777776542221 1111111
Q ss_pred ----HHHHHHHHHHH--cCCcEEEEEeCCCC
Q 037935 248 ----RRASRLYERLK--NENKILVILDNIWK 272 (1085)
Q Consensus 248 ----~~~~~~~~~l~--~~~~~LlvlDdv~~ 272 (1085)
-....+.++++ +++++|+++||+..
T Consensus 221 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 221 ILTPRMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 12334556665 58999999999854
No 486
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=91.71 E-value=0.38 Score=49.31 Aligned_cols=41 Identities=29% Similarity=0.483 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcC
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPD 225 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 225 (1085)
+.|+|+|-||+||||.+..+..-....+ ..++-|-+..+.+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G--~kVl~iGCDPK~D 41 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMG--KKVLQIGCDPKAD 41 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESSSST
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhcc--ceeeEecccCCCc
Confidence 5799999999999999999988776542 4577777765543
No 487
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.67 E-value=0.15 Score=52.86 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=22.9
Q ss_pred EEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeC
Q 037935 187 VYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVS 221 (1085)
Q Consensus 187 I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~ 221 (1085)
|+|++|+||||+++.+.+.....+ ..++-|+.-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcc
Confidence 689999999999999999887542 234445553
No 488
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.65 E-value=0.27 Score=47.33 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
++++|+|..|+|||||+..+......+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999887654
No 489
>PRK13948 shikimate kinase; Provisional
Probab=91.64 E-value=0.18 Score=49.82 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.....|.++|+.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999998865
No 490
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.63 E-value=0.31 Score=48.38 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=31.6
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFAR 204 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~ 204 (1085)
..++|.+..+..+.-+... ..-+.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 4578888887777666553 36889999999999999999875
No 491
>PRK13946 shikimate kinase; Provisional
Probab=91.60 E-value=0.15 Score=50.91 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
+.|.++|+.|+||||+++.+.+....
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 57999999999999999999998753
No 492
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=91.59 E-value=0.62 Score=52.38 Aligned_cols=86 Identities=21% Similarity=0.276 Sum_probs=49.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcC-HHHHHHHHHHHhCCC---------CCCc-hH--
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPD-IKKIQGEIAEKLGLE---------LSDE-AE-- 246 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~---------~~~~-~~-- 246 (1085)
..-..++|+|..|+|||||++.+..... -+..+..-+..... ..++.+. .++.. ..++ ..
T Consensus 155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~---~l~~~l~~tvvV~atsddsp~~R 227 (434)
T PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEK---NLGGDLENTVIVVATSDDSPLMR 227 (434)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHH---HhcCcccceEEEEECCCCCHHHh
Confidence 3456899999999999999999987543 23444444444332 2333332 22221 0111 11
Q ss_pred ---HHHHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 247 ---YRRASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 247 ---~~~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
......+.+++. +++++|+++||+..
T Consensus 228 ~~~~~~a~~iAEyFrd~G~~Vll~~DslTr 257 (434)
T PRK08472 228 KYGAFCAMSVAEYFKNQGLDVLFIMDSVTR 257 (434)
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEecccchH
Confidence 111233444443 69999999999854
No 493
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=91.55 E-value=0.32 Score=52.23 Aligned_cols=43 Identities=28% Similarity=0.462 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
++|+|.|-||+||||++..+......++ + .++-|+.....+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G-~-kVlliD~Dpq~n~~ 44 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMG-K-KVMIVGCDPKADST 44 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCC-C-eEEEEEcCCCCCch
Confidence 5788899999999999999988776432 2 45557765554433
No 494
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.54 E-value=0.13 Score=50.14 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 037935 185 IGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998875
No 495
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=91.54 E-value=0.19 Score=53.21 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
++|+|+|.+|+|||||+..+......++ .++-|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G---~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG---RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC---CEEEEEE
Confidence 5899999999999999999999988664 2554544
No 496
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=91.50 E-value=0.66 Score=52.31 Aligned_cols=88 Identities=20% Similarity=0.409 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-cCHHHHHHHHHHHhCCCC-------CCchHH-----
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLEL-------SDEAEY----- 247 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~----- 247 (1085)
.-..++|+|..|+|||||++.+..... .+.++...+... .+..++...+...-+... .+.+..
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 446799999999999999998876432 344444444333 345555555554432211 111111
Q ss_pred -HHHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 248 -RRASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 248 -~~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
.....+.++++ +++++|+++||+..
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 11223334443 69999999999854
No 497
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=91.48 E-value=0.57 Score=47.70 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.....|+|+|.+|+|||||...+....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 456799999999999999999988764
No 498
>PRK00279 adk adenylate kinase; Reviewed
Probab=91.46 E-value=0.86 Score=46.80 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987754
No 499
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.44 E-value=0.28 Score=52.81 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=36.6
Q ss_pred CccccchHHHHHH---HHHHhccCC--ceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 160 YEAFESRVSTLKS---IQNALTDVN--VSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 160 ~~~~~gr~~~~~~---l~~~l~~~~--~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
...+||..+..+. +++++..++ -+.|-+.|++|.|||+||..+.+....+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 3578998777665 456655543 4889999999999999999999998755
No 500
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.43 E-value=0.18 Score=50.22 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
..++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998754
Done!