Query 037935
Match_columns 1085
No_of_seqs 546 out of 4635
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 09:33:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037935.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037935hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.2E-41 7.5E-46 400.0 19.4 288 164-472 131-472 (549)
2 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-33 5.2E-38 346.9 32.2 539 478-1075 12-602 (680)
3 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-34 8.3E-39 349.1 24.6 508 478-1069 19-558 (606)
4 3rgz_A Protein brassinosteroid 100.0 8.1E-34 2.8E-38 351.8 25.8 529 491-1078 99-726 (768)
5 3t6q_A CD180 antigen; protein- 100.0 2.6E-33 8.9E-38 340.1 27.2 513 481-1068 23-559 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-32 4.7E-37 333.7 30.6 492 494-1075 13-539 (606)
7 1vt4_I APAF-1 related killer D 100.0 1.3E-33 4.5E-38 332.9 19.5 261 163-464 130-436 (1221)
8 3t6q_A CD180 antigen; protein- 100.0 1.3E-32 4.4E-37 334.0 27.6 488 490-1042 55-559 (606)
9 3rgz_A Protein brassinosteroid 100.0 6.5E-33 2.2E-37 343.7 22.7 508 491-1073 150-744 (768)
10 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-31 1.2E-35 325.7 34.4 519 495-1077 7-580 (680)
11 3sfz_A APAF-1, apoptotic pepti 100.0 3.5E-32 1.2E-36 360.0 26.6 291 157-471 120-452 (1249)
12 3j0a_A TOLL-like receptor 5; m 100.0 5.9E-31 2E-35 329.7 31.4 164 477-655 11-183 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 3.9E-30 1.3E-34 310.1 29.9 474 481-1073 18-535 (570)
14 3j0a_A TOLL-like receptor 5; m 100.0 6.4E-30 2.2E-34 320.3 32.1 145 495-656 7-158 (844)
15 2z63_A TOLL-like receptor 4, v 100.0 2.6E-30 8.7E-35 311.7 27.0 452 490-1007 50-529 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-30 6.7E-35 310.9 24.4 149 491-654 25-180 (549)
17 1z6t_A APAF-1, apoptotic prote 100.0 2.8E-29 9.5E-34 302.4 26.3 288 158-469 121-450 (591)
18 2z81_A CD282 antigen, TOLL-lik 100.0 2E-28 6.8E-33 293.5 29.1 487 497-1068 10-509 (549)
19 4eco_A Uncharacterized protein 100.0 3.4E-29 1.2E-33 302.8 19.4 215 835-1070 401-633 (636)
20 4eco_A Uncharacterized protein 100.0 2.9E-29 1E-33 303.3 18.5 298 703-1044 319-633 (636)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-28 5.4E-33 291.9 23.3 143 495-656 3-148 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 1E-28 3.4E-33 302.2 21.5 310 711-1070 547-873 (876)
23 4ecn_A Leucine-rich repeat pro 100.0 1.4E-28 4.9E-33 300.9 21.6 356 532-1012 440-842 (876)
24 4g8a_A TOLL-like receptor 4; l 100.0 1E-27 3.5E-32 293.5 27.4 149 479-642 40-191 (635)
25 2z7x_B TOLL-like receptor 1, v 100.0 4.6E-28 1.6E-32 287.9 17.0 119 517-656 3-125 (520)
26 4g8a_A TOLL-like receptor 4; l 99.9 6.2E-26 2.1E-30 277.7 30.7 506 496-1067 35-578 (635)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.7E-26 2.6E-30 270.8 26.4 454 494-1007 33-508 (562)
28 3v47_A TOLL-like receptor 5B a 99.9 1.1E-25 3.7E-30 262.8 25.6 377 496-1007 14-406 (455)
29 1o6v_A Internalin A; bacterial 99.9 3.9E-25 1.3E-29 257.9 27.2 149 835-1012 242-390 (466)
30 1o6v_A Internalin A; bacterial 99.9 4E-25 1.4E-29 257.7 27.4 218 708-986 173-390 (466)
31 3v47_A TOLL-like receptor 5B a 99.9 2.2E-25 7.5E-30 260.2 23.7 368 478-981 18-406 (455)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.9E-25 9.8E-30 265.8 23.5 438 477-981 38-508 (562)
33 2id5_A Lingo-1, leucine rich r 99.9 2.5E-24 8.5E-29 252.5 23.0 315 495-925 14-329 (477)
34 1jl5_A Outer protein YOPM; leu 99.9 8.9E-25 3.1E-29 251.8 16.2 275 704-1068 146-428 (454)
35 1jl5_A Outer protein YOPM; leu 99.9 1.4E-24 4.7E-29 250.3 17.7 391 491-1043 10-429 (454)
36 3o6n_A APL1; leucine-rich repe 99.9 6.6E-24 2.3E-28 241.7 19.7 311 511-985 42-353 (390)
37 3bz5_A Internalin-J, INLJ; leu 99.9 1E-23 3.5E-28 243.2 21.2 130 835-1007 211-350 (457)
38 4fmz_A Internalin; leucine ric 99.9 5.3E-23 1.8E-27 230.4 25.9 302 490-926 42-343 (347)
39 4fmz_A Internalin; leucine ric 99.9 7.3E-24 2.5E-28 237.4 18.8 81 512-601 42-122 (347)
40 3oja_B Anopheles plasmodium-re 99.9 1.3E-23 4.5E-28 252.6 19.6 115 511-640 48-163 (597)
41 2id5_A Lingo-1, leucine rich r 99.9 2E-23 7E-28 244.7 19.2 310 478-899 19-333 (477)
42 3o6n_A APL1; leucine-rich repe 99.9 1.1E-22 3.9E-27 231.4 22.3 304 489-925 42-348 (390)
43 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-22 1.1E-26 230.6 21.8 306 491-900 41-353 (457)
44 3oja_B Anopheles plasmodium-re 99.9 2.9E-22 9.9E-27 240.9 21.2 304 490-926 49-355 (597)
45 1xku_A Decorin; proteoglycan, 99.9 3.3E-20 1.1E-24 205.7 23.3 289 492-897 31-330 (330)
46 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-20 3.8E-25 209.6 18.9 246 542-932 34-279 (332)
47 1xku_A Decorin; proteoglycan, 99.8 1.5E-20 5.1E-25 208.5 19.1 86 542-641 32-117 (330)
48 2ft3_A Biglycan; proteoglycan, 99.8 3.2E-20 1.1E-24 205.9 18.3 126 493-637 34-160 (332)
49 3ogk_B Coronatine-insensitive 99.8 4.5E-22 1.5E-26 240.7 2.6 90 539-637 110-205 (592)
50 2p1m_B Transport inhibitor res 99.8 9.8E-22 3.4E-26 237.9 3.6 88 536-635 100-195 (594)
51 3ogk_B Coronatine-insensitive 99.8 7.2E-21 2.4E-25 230.1 8.5 132 512-654 110-251 (592)
52 3g06_A SSPH2 (leucine-rich rep 99.8 7.5E-19 2.6E-23 208.2 22.9 258 493-900 41-298 (622)
53 2p1m_B Transport inhibitor res 99.8 1.1E-20 3.7E-25 228.7 4.5 434 535-1066 60-541 (594)
54 3zyi_A Leucine-rich repeat-con 99.8 4.6E-19 1.6E-23 205.6 17.0 65 833-899 239-303 (452)
55 3zyj_A Leucine-rich repeat-con 99.8 4.9E-19 1.7E-23 204.6 17.1 65 833-899 228-292 (440)
56 2z80_A TOLL-like receptor 2, v 99.8 5.5E-19 1.9E-23 197.8 16.9 65 835-901 173-237 (353)
57 2z80_A TOLL-like receptor 2, v 99.8 8E-19 2.7E-23 196.5 17.4 143 497-654 36-182 (353)
58 4fcg_A Uncharacterized protein 99.8 9.8E-19 3.3E-23 192.7 17.6 119 513-639 80-198 (328)
59 1z7x_W Ribonuclease inhibitor; 99.8 7.6E-21 2.6E-25 222.2 0.7 113 514-637 3-126 (461)
60 4fcg_A Uncharacterized protein 99.8 5.6E-19 1.9E-23 194.6 15.6 204 492-755 81-294 (328)
61 3zyj_A Leucine-rich repeat-con 99.8 6.2E-19 2.1E-23 203.7 16.6 85 835-927 206-290 (440)
62 1ogq_A PGIP-2, polygalacturona 99.8 2.3E-19 7.8E-24 196.6 11.7 108 514-637 50-162 (313)
63 3zyi_A Leucine-rich repeat-con 99.8 6.9E-19 2.4E-23 204.1 16.3 85 835-927 217-301 (452)
64 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-18 3.6E-23 191.3 14.5 250 541-930 50-305 (313)
65 3g06_A SSPH2 (leucine-rich rep 99.8 3.3E-18 1.1E-22 202.8 19.7 256 514-927 40-295 (622)
66 2z66_A Variable lymphocyte rec 99.8 7.1E-19 2.4E-23 192.7 12.1 126 495-636 10-138 (306)
67 3o53_A Protein LRIM1, AGAP0063 99.8 5.1E-19 1.7E-23 194.5 9.1 91 529-638 22-113 (317)
68 1z7x_W Ribonuclease inhibitor; 99.8 7.1E-20 2.4E-24 213.9 1.7 372 540-1007 2-409 (461)
69 3o53_A Protein LRIM1, AGAP0063 99.7 1.1E-18 3.7E-23 191.8 7.5 104 512-639 32-135 (317)
70 2z66_A Variable lymphocyte rec 99.7 2E-17 6.9E-22 181.1 15.0 143 478-637 15-163 (306)
71 1ozn_A Reticulon 4 receptor; N 99.7 1.3E-17 4.5E-22 180.5 11.7 219 496-749 15-236 (285)
72 1ozn_A Reticulon 4 receptor; N 99.7 3.4E-16 1.2E-20 169.3 18.3 64 834-899 175-238 (285)
73 2z62_A TOLL-like receptor 4, v 99.7 2E-16 6.7E-21 170.3 15.5 57 840-899 181-237 (276)
74 1wwl_A Monocyte differentiatio 99.7 1.1E-17 3.8E-22 183.2 4.6 58 835-899 252-309 (312)
75 3oja_A Leucine-rich immune mol 99.7 1.5E-16 5.2E-21 185.0 12.6 57 542-601 35-92 (487)
76 2o6q_A Variable lymphocyte rec 99.7 6.7E-16 2.3E-20 165.2 15.9 197 493-749 17-216 (270)
77 3oja_A Leucine-rich immune mol 99.6 4E-16 1.4E-20 181.5 13.3 81 512-602 32-112 (487)
78 2o6q_A Variable lymphocyte rec 99.6 1.9E-15 6.3E-20 161.8 13.9 62 835-898 156-217 (270)
79 1h6u_A Internalin H; cell adhe 99.6 2.2E-15 7.6E-20 164.3 13.3 60 835-900 172-231 (308)
80 2xwt_C Thyrotropin receptor; s 99.6 2.4E-15 8.3E-20 157.7 12.9 202 836-1069 31-239 (239)
81 4ay9_X Follicle-stimulating ho 99.6 2.7E-15 9.2E-20 167.1 12.9 100 836-953 154-254 (350)
82 2xwt_C Thyrotropin receptor; s 99.6 1.7E-15 5.7E-20 159.0 10.4 134 501-653 20-163 (239)
83 2z62_A TOLL-like receptor 4, v 99.6 4.2E-15 1.4E-19 159.8 13.0 205 490-749 26-235 (276)
84 1h6u_A Internalin H; cell adhe 99.6 1E-14 3.5E-19 159.0 15.7 143 490-654 39-181 (308)
85 2ast_B S-phase kinase-associat 99.6 6.1E-16 2.1E-20 172.0 5.9 154 514-749 47-206 (336)
86 1p9a_G Platelet glycoprotein I 99.6 8.2E-15 2.8E-19 158.0 14.1 196 491-749 9-206 (290)
87 1p9a_G Platelet glycoprotein I 99.6 9.4E-15 3.2E-19 157.5 14.0 203 537-899 6-208 (290)
88 3m19_A Variable lymphocyte rec 99.6 1.7E-14 5.8E-19 152.4 14.6 133 493-641 15-148 (251)
89 4ay9_X Follicle-stimulating ho 99.6 1.3E-14 4.4E-19 161.7 14.3 107 517-641 12-121 (350)
90 2ast_B S-phase kinase-associat 99.6 1.7E-15 5.9E-20 168.4 7.2 177 493-750 48-234 (336)
91 1wwl_A Monocyte differentiatio 99.6 1.1E-15 3.7E-20 167.4 4.6 150 493-654 64-236 (312)
92 3rfs_A Internalin B, repeat mo 99.6 9.5E-15 3.3E-19 156.3 11.9 147 490-653 39-188 (272)
93 3rfs_A Internalin B, repeat mo 99.6 6.1E-15 2.1E-19 157.9 10.0 143 494-654 21-165 (272)
94 2ca6_A RAN GTPase-activating p 99.5 9.3E-15 3.2E-19 165.6 5.9 257 530-900 22-317 (386)
95 1h6t_A Internalin B; cell adhe 99.5 2E-13 6.8E-18 147.3 14.7 125 491-637 45-169 (291)
96 2ca6_A RAN GTPase-activating p 99.5 4.1E-14 1.4E-18 160.3 9.2 122 504-637 21-172 (386)
97 3goz_A Leucine-rich repeat-con 99.5 5.7E-14 1.9E-18 157.3 9.6 93 534-638 15-123 (362)
98 4glp_A Monocyte differentiatio 99.5 7.9E-14 2.7E-18 152.5 10.2 93 540-640 63-161 (310)
99 3goz_A Leucine-rich repeat-con 99.5 2.6E-14 8.8E-19 160.1 6.3 80 546-637 3-93 (362)
100 2v9t_B SLIT homolog 2 protein 99.5 1.2E-13 4.2E-18 142.1 10.6 146 495-656 14-162 (220)
101 3m19_A Variable lymphocyte rec 99.4 3E-13 1E-17 142.8 12.7 163 478-656 22-189 (251)
102 2o6s_A Variable lymphocyte rec 99.4 1.7E-13 5.9E-18 140.1 9.4 143 495-653 10-155 (208)
103 1h6t_A Internalin B; cell adhe 99.4 1.3E-13 4.6E-18 148.6 8.8 135 497-653 29-163 (291)
104 1m9s_A Internalin B; cell inva 99.4 7.3E-13 2.5E-17 156.8 13.0 100 493-601 44-143 (605)
105 2xot_A Amphoterin-induced prot 99.4 5.7E-13 1.9E-17 148.9 11.4 177 494-749 20-200 (361)
106 3e6j_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 136.0 11.9 145 494-655 21-168 (229)
107 1m9s_A Internalin B; cell inva 99.4 3.6E-13 1.2E-17 159.5 9.3 187 493-749 22-208 (605)
108 2v70_A SLIT-2, SLIT homolog 2 99.4 7.1E-13 2.4E-17 136.3 10.0 146 495-656 14-163 (220)
109 2qen_A Walker-type ATPase; unk 99.4 3.2E-11 1.1E-15 134.6 23.9 271 157-465 8-349 (350)
110 2o6s_A Variable lymphocyte rec 99.4 1.5E-12 5E-17 133.1 11.5 134 489-637 25-161 (208)
111 4ezg_A Putative uncharacterize 99.4 1.5E-12 5.1E-17 131.6 11.3 62 537-601 62-124 (197)
112 4ezg_A Putative uncharacterize 99.4 2.7E-12 9.3E-17 129.7 12.0 149 489-656 41-191 (197)
113 1xeu_A Internalin C; cellular 99.3 5.6E-13 1.9E-17 141.3 6.5 125 491-638 18-142 (263)
114 3cvr_A Invasion plasmid antige 99.3 6.1E-12 2.1E-16 147.1 15.6 180 493-752 60-244 (571)
115 4glp_A Monocyte differentiatio 99.3 2.5E-12 8.7E-17 140.5 11.3 151 492-654 91-259 (310)
116 2ell_A Acidic leucine-rich nuc 99.3 3.5E-12 1.2E-16 125.2 10.6 139 490-642 22-165 (168)
117 2v9t_B SLIT homolog 2 protein 99.3 3.3E-12 1.1E-16 131.3 10.4 144 478-637 19-165 (220)
118 2v70_A SLIT-2, SLIT homolog 2 99.3 5.1E-12 1.8E-16 129.9 11.2 144 478-637 19-166 (220)
119 1w5s_A Origin recognition comp 99.3 7.8E-11 2.7E-15 134.7 22.3 281 160-460 21-387 (412)
120 2fna_A Conserved hypothetical 99.3 1.1E-10 3.6E-15 130.8 22.0 270 158-464 10-356 (357)
121 3e6j_A Variable lymphocyte rec 99.3 7.8E-12 2.7E-16 129.5 11.2 142 480-638 29-173 (229)
122 2xot_A Amphoterin-induced prot 99.3 9.2E-12 3.1E-16 139.1 10.7 166 477-655 25-198 (361)
123 1xeu_A Internalin C; cellular 99.2 2.2E-11 7.6E-16 128.9 11.6 145 489-656 38-182 (263)
124 1w8a_A SLIT protein; signaling 99.2 9E-12 3.1E-16 125.0 7.9 127 495-637 11-139 (192)
125 2je0_A Acidic leucine-rich nuc 99.2 1.7E-11 5.9E-16 117.5 9.2 128 491-632 16-148 (149)
126 4b8c_D Glucose-repressible alc 99.2 1.1E-11 3.8E-16 150.9 8.5 151 491-655 172-325 (727)
127 2wfh_A SLIT homolog 2 protein 99.2 3.2E-11 1.1E-15 120.9 10.1 126 495-637 13-139 (193)
128 1a9n_A U2A', U2A'; complex (nu 99.2 8.8E-12 3E-16 123.3 5.1 104 492-601 19-125 (176)
129 2o6r_A Variable lymphocyte rec 99.2 4.8E-11 1.7E-15 118.1 10.4 129 494-638 9-138 (177)
130 2wfh_A SLIT homolog 2 protein 99.2 4.1E-11 1.4E-15 120.1 9.6 122 517-656 13-136 (193)
131 3cvr_A Invasion plasmid antige 99.2 6.1E-11 2.1E-15 138.6 12.5 171 490-739 78-255 (571)
132 3sb4_A Hypothetical leucine ri 99.2 2.4E-11 8.2E-16 133.9 7.3 111 513-643 24-143 (329)
133 2ell_A Acidic leucine-rich nuc 99.1 4.2E-11 1.4E-15 117.4 7.7 130 512-657 22-158 (168)
134 1a9n_A U2A', U2A'; complex (nu 99.1 4.6E-11 1.6E-15 118.1 7.9 135 506-656 11-150 (176)
135 2je0_A Acidic leucine-rich nuc 99.1 4.8E-11 1.6E-15 114.3 6.4 126 512-653 15-147 (149)
136 2qby_B CDC6 homolog 3, cell di 99.1 5.1E-09 1.8E-13 118.2 22.5 264 161-447 20-338 (384)
137 3qfl_A MLA10; coiled-coil, (CC 99.1 1.2E-10 4.1E-15 103.5 6.8 76 17-101 5-81 (115)
138 3sb4_A Hypothetical leucine ri 99.1 3.5E-10 1.2E-14 124.5 10.9 36 711-749 100-135 (329)
139 2r9u_A Variable lymphocyte rec 99.1 3.5E-10 1.2E-14 111.0 9.7 102 495-601 15-117 (174)
140 1w8a_A SLIT protein; signaling 99.0 1.6E-10 5.4E-15 115.9 6.9 122 517-656 11-136 (192)
141 3g39_A Variable lymphocyte rec 99.0 3.8E-10 1.3E-14 110.4 9.3 103 494-601 11-114 (170)
142 1dce_A Protein (RAB geranylger 99.0 2.7E-10 9.1E-15 134.1 9.8 101 494-601 443-545 (567)
143 2o6r_A Variable lymphocyte rec 99.0 7.8E-10 2.7E-14 109.3 11.5 119 479-602 16-137 (177)
144 1dce_A Protein (RAB geranylger 99.0 9.3E-10 3.2E-14 129.5 11.4 134 496-652 427-566 (567)
145 4b8c_D Glucose-repressible alc 99.0 2.5E-10 8.5E-15 139.0 6.0 109 512-638 222-330 (727)
146 2v1u_A Cell division control p 99.0 5.3E-08 1.8E-12 110.1 24.6 267 160-447 18-350 (387)
147 2r9u_A Variable lymphocyte rec 99.0 7.2E-10 2.5E-14 108.8 7.9 109 516-642 14-123 (174)
148 1ds9_A Outer arm dynein; leuci 99.0 3.4E-11 1.2E-15 121.7 -2.0 128 494-639 25-155 (198)
149 3g39_A Variable lymphocyte rec 99.0 9.4E-10 3.2E-14 107.6 7.9 109 515-641 10-119 (170)
150 2qby_A CDC6 homolog 1, cell di 98.9 1.5E-08 5.1E-13 114.6 18.5 267 160-447 19-347 (386)
151 1fnn_A CDC6P, cell division co 98.9 1.2E-07 4E-12 107.2 25.0 266 161-448 17-351 (389)
152 1ds9_A Outer arm dynein; leuci 98.9 1.5E-10 5.2E-15 116.9 0.4 106 515-638 24-129 (198)
153 1njg_A DNA polymerase III subu 98.9 2.1E-08 7E-13 105.4 14.6 177 160-344 22-231 (250)
154 2chg_A Replication factor C sm 98.8 2.8E-08 9.7E-13 102.6 14.9 168 160-343 16-206 (226)
155 4fdw_A Leucine rich hypothetic 98.7 1.5E-07 5.1E-12 105.6 16.1 81 513-602 112-193 (401)
156 4fs7_A Uncharacterized protein 98.7 2.9E-07 9.8E-12 103.9 17.1 68 529-599 59-127 (394)
157 2ifg_A High affinity nerve gro 98.6 3.9E-08 1.3E-12 109.1 8.6 100 497-601 13-115 (347)
158 3te6_A Regulatory protein SIR3 98.6 4.7E-07 1.6E-11 96.2 15.7 113 162-274 21-145 (318)
159 1sxj_B Activator 1 37 kDa subu 98.6 2.8E-07 9.6E-12 101.1 12.5 168 160-342 20-211 (323)
160 2ifg_A High affinity nerve gro 98.5 8.8E-08 3E-12 106.3 7.3 104 518-638 12-117 (347)
161 4fdw_A Leucine rich hypothetic 98.5 1.8E-06 6.1E-11 96.8 17.3 234 494-806 115-355 (401)
162 4fs7_A Uncharacterized protein 98.4 1.9E-06 6.4E-11 97.2 15.9 129 504-653 59-192 (394)
163 1iqp_A RFCS; clamp loader, ext 98.4 8E-07 2.7E-11 97.6 10.8 167 160-344 24-215 (327)
164 1hqc_A RUVB; extended AAA-ATPa 98.4 6.5E-07 2.2E-11 98.1 9.9 156 160-344 11-214 (324)
165 3un9_A NLR family member X1; l 98.4 6.5E-08 2.2E-12 107.4 1.7 88 541-636 101-195 (372)
166 3e4g_A ATP synthase subunit S, 98.3 1.6E-07 5.5E-12 89.8 1.5 41 945-985 114-154 (176)
167 3e4g_A ATP synthase subunit S, 98.2 5.2E-07 1.8E-11 86.2 3.4 90 946-1045 62-154 (176)
168 2chq_A Replication factor C sm 98.2 8.8E-06 3E-10 88.8 12.6 163 161-342 17-205 (319)
169 1jbk_A CLPB protein; beta barr 98.1 1.5E-05 5.2E-10 79.5 12.2 49 160-208 21-69 (195)
170 3un9_A NLR family member X1; l 98.1 8.7E-07 3E-11 98.3 3.0 34 541-574 155-193 (372)
171 1jr3_A DNA polymerase III subu 98.1 2E-05 6.8E-10 88.2 13.6 174 161-342 16-222 (373)
172 3h4m_A Proteasome-activating n 98.0 0.00014 4.9E-09 77.5 17.8 49 159-207 15-76 (285)
173 2p65_A Hypothetical protein PF 97.9 2.6E-05 8.8E-10 77.3 9.6 49 160-208 21-69 (187)
174 4gt6_A Cell surface protein; l 97.9 9.6E-05 3.3E-09 83.1 15.1 79 515-599 65-147 (394)
175 3pvs_A Replication-associated 97.9 0.00013 4.4E-09 82.4 16.0 159 160-342 25-216 (447)
176 2ra8_A Uncharacterized protein 97.9 9.5E-06 3.3E-10 89.0 6.0 64 835-898 251-319 (362)
177 2qz4_A Paraplegin; AAA+, SPG7, 97.9 0.0002 7E-09 75.2 15.9 93 161-273 6-110 (262)
178 4gt6_A Cell surface protein; l 97.9 0.0002 7E-09 80.4 16.7 91 529-632 51-145 (394)
179 2ra8_A Uncharacterized protein 97.9 8.2E-06 2.8E-10 89.5 4.8 168 704-897 164-341 (362)
180 1sxj_D Activator 1 41 kDa subu 97.8 3.5E-05 1.2E-09 85.3 9.7 173 160-340 36-234 (353)
181 3b9p_A CG5977-PA, isoform A; A 97.7 0.00063 2.1E-08 73.0 17.0 94 160-273 20-125 (297)
182 3d8b_A Fidgetin-like protein 1 97.7 0.00061 2.1E-08 74.9 16.6 47 161-207 84-142 (357)
183 1d2n_A N-ethylmaleimide-sensit 97.7 0.00051 1.7E-08 72.5 14.8 46 162-207 34-89 (272)
184 3rw6_A Nuclear RNA export fact 97.6 4E-05 1.4E-09 79.3 5.8 87 537-630 166-257 (267)
185 1sxj_A Activator 1 95 kDa subu 97.6 8.4E-05 2.9E-09 86.3 9.2 173 159-341 37-253 (516)
186 4h09_A Hypothetical leucine ri 97.6 0.0022 7.4E-08 71.5 20.5 79 512-599 44-123 (379)
187 3bos_A Putative DNA replicatio 97.6 4.1E-05 1.4E-09 79.5 5.8 173 161-340 28-216 (242)
188 3eie_A Vacuolar protein sortin 97.6 0.00085 2.9E-08 72.7 15.9 162 159-341 16-228 (322)
189 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.0016 5.4E-08 70.3 17.9 95 160-273 11-117 (322)
190 1io0_A Tropomodulin; LRR prote 97.5 6.1E-05 2.1E-09 74.2 5.1 116 512-637 34-164 (185)
191 3pfi_A Holliday junction ATP-d 97.5 0.00045 1.5E-08 75.7 12.7 153 160-342 28-228 (338)
192 4b4t_J 26S protease regulatory 97.5 0.0012 4E-08 72.0 15.4 94 160-273 147-253 (405)
193 1sxj_E Activator 1 40 kDa subu 97.5 0.0003 1E-08 77.8 11.2 46 161-206 14-60 (354)
194 3syl_A Protein CBBX; photosynt 97.5 0.00032 1.1E-08 75.9 11.2 48 162-209 32-94 (309)
195 1sxj_C Activator 1 40 kDa subu 97.5 0.00049 1.7E-08 75.4 12.4 48 160-207 24-71 (340)
196 3uk6_A RUVB-like 2; hexameric 97.5 0.00072 2.5E-08 75.1 13.5 49 160-208 43-96 (368)
197 1a5t_A Delta prime, HOLB; zinc 97.5 0.0014 4.8E-08 71.3 15.4 149 167-339 8-203 (334)
198 3vfd_A Spastin; ATPase, microt 97.5 0.0017 5.9E-08 72.4 16.4 48 160-207 114-173 (389)
199 4b4t_H 26S protease regulatory 97.4 0.002 6.7E-08 71.2 15.2 93 161-273 209-314 (467)
200 4h09_A Hypothetical leucine ri 97.4 0.006 2E-07 67.9 19.7 97 491-598 45-144 (379)
201 3u61_B DNA polymerase accessor 97.3 0.00098 3.4E-08 72.5 12.3 48 160-207 25-73 (324)
202 2qp9_X Vacuolar protein sortin 97.3 0.0024 8.3E-08 69.9 15.4 161 160-341 50-261 (355)
203 2z4s_A Chromosomal replication 97.3 0.00096 3.3E-08 75.4 12.4 153 170-338 117-303 (440)
204 2zan_A Vacuolar protein sortin 97.3 0.0049 1.7E-07 69.8 17.6 95 160-273 133-239 (444)
205 3rw6_A Nuclear RNA export fact 97.3 0.00031 1E-08 72.7 6.7 81 512-595 168-257 (267)
206 4b4t_I 26S protease regulatory 97.3 0.003 1E-07 69.0 14.5 92 161-272 182-286 (437)
207 3ec2_A DNA replication protein 97.2 0.00046 1.6E-08 67.6 7.2 90 166-272 19-111 (180)
208 1io0_A Tropomodulin; LRR prote 97.2 0.00017 5.9E-09 70.9 3.9 114 535-656 30-161 (185)
209 2w58_A DNAI, primosome compone 97.2 0.00091 3.1E-08 66.9 9.1 89 167-273 35-127 (202)
210 3pxg_A Negative regulator of g 97.1 0.0013 4.5E-08 75.1 10.7 48 160-207 179-226 (468)
211 4b4t_L 26S protease subunit RP 97.1 0.0032 1.1E-07 69.8 13.0 94 160-273 180-286 (437)
212 4b4t_K 26S protease regulatory 97.0 0.0034 1.2E-07 69.5 12.1 93 160-272 171-276 (428)
213 1qvr_A CLPB protein; coiled co 97.0 0.0014 4.8E-08 81.2 10.1 101 160-273 169-275 (854)
214 4b4t_M 26S protease regulatory 97.0 0.0028 9.7E-08 70.1 11.0 93 160-272 180-285 (434)
215 3cf0_A Transitional endoplasmi 97.0 0.0026 9E-08 68.0 10.4 93 160-272 14-119 (301)
216 3n70_A Transport activator; si 96.9 0.00041 1.4E-08 65.1 3.5 46 162-207 2-49 (145)
217 1l8q_A Chromosomal replication 96.8 0.0052 1.8E-07 66.6 11.8 49 170-220 23-73 (324)
218 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0043 1.5E-07 76.0 11.8 101 160-273 185-290 (758)
219 3pxi_A Negative regulator of g 96.6 0.0049 1.7E-07 75.4 10.2 48 160-207 179-226 (758)
220 1lv7_A FTSH; alpha/beta domain 96.5 0.007 2.4E-07 63.0 9.8 93 160-272 11-115 (257)
221 2gno_A DNA polymerase III, gam 96.4 0.0094 3.2E-07 63.3 10.0 70 167-238 3-75 (305)
222 2x8a_A Nuclear valosin-contain 96.4 0.018 6.1E-07 60.3 11.9 92 161-272 10-114 (274)
223 3co5_A Putative two-component 96.4 0.0008 2.7E-08 62.8 1.4 45 162-206 5-51 (143)
224 2ce7_A Cell division protein F 96.3 0.016 5.6E-07 65.3 11.5 92 161-272 16-119 (476)
225 4fcw_A Chaperone protein CLPB; 96.3 0.0048 1.6E-07 66.5 6.7 105 162-273 18-131 (311)
226 3rfe_A Platelet glycoprotein I 96.3 0.0038 1.3E-07 56.8 4.9 55 544-601 11-67 (130)
227 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.011 3.9E-07 61.8 8.3 69 183-273 124-194 (331)
228 3hu3_A Transitional endoplasmi 96.1 0.012 4E-07 67.1 8.9 91 161-271 204-307 (489)
229 1n0w_A DNA repair protein RAD5 96.1 0.028 9.4E-07 57.8 11.1 90 182-272 24-130 (243)
230 3t15_A Ribulose bisphosphate c 96.0 0.0057 1.9E-07 65.0 5.6 28 181-208 35-62 (293)
231 2cvh_A DNA repair and recombin 96.0 0.03 1E-06 56.5 10.7 45 182-231 20-64 (220)
232 2c9o_A RUVB-like 1; hexameric 95.9 0.012 4.2E-07 66.9 8.2 48 161-208 37-89 (456)
233 3io5_A Recombination and repai 95.9 0.033 1.1E-06 58.1 10.4 86 183-273 29-123 (333)
234 3cf2_A TER ATPase, transitiona 95.8 0.011 3.7E-07 70.8 7.5 93 161-273 204-309 (806)
235 2kjq_A DNAA-related protein; s 95.7 0.012 4E-07 55.1 5.8 40 181-222 35-74 (149)
236 3hr8_A Protein RECA; alpha and 95.7 0.041 1.4E-06 59.3 10.8 85 182-273 61-151 (356)
237 1v5w_A DMC1, meiotic recombina 95.7 0.052 1.8E-06 58.9 11.7 58 181-239 121-182 (343)
238 3m6a_A ATP-dependent protease 95.6 0.067 2.3E-06 62.0 12.7 47 161-207 81-133 (543)
239 2i1q_A DNA repair and recombin 95.5 0.051 1.8E-06 58.5 10.9 58 182-240 98-169 (322)
240 2qgz_A Helicase loader, putati 95.5 0.019 6.4E-07 61.3 7.2 53 166-220 133-189 (308)
241 1iy2_A ATP-dependent metallopr 95.4 0.028 9.7E-07 59.1 8.1 48 160-207 39-98 (278)
242 2z43_A DNA repair and recombin 95.4 0.056 1.9E-06 58.1 10.6 58 182-240 107-168 (324)
243 3lda_A DNA repair protein RAD5 95.3 0.054 1.8E-06 59.6 10.1 89 182-271 178-283 (400)
244 1xp8_A RECA protein, recombina 95.2 0.069 2.3E-06 58.0 10.2 84 182-272 74-163 (366)
245 1qvr_A CLPB protein; coiled co 95.1 0.51 1.8E-05 58.2 19.1 46 162-207 559-613 (854)
246 1sky_E F1-ATPase, F1-ATP synth 95.1 0.067 2.3E-06 59.4 9.9 88 183-271 152-255 (473)
247 2zr9_A Protein RECA, recombina 95.0 0.074 2.5E-06 57.5 10.1 84 182-272 61-150 (349)
248 1u94_A RECA protein, recombina 95.0 0.072 2.5E-06 57.7 9.9 84 182-272 63-152 (356)
249 1rz3_A Hypothetical protein rb 95.0 0.026 8.8E-07 56.0 5.8 44 165-208 2-48 (201)
250 1ofh_A ATP-dependent HSL prote 94.9 0.02 7E-07 61.4 5.3 47 161-207 15-75 (310)
251 3ice_A Transcription terminati 94.9 0.039 1.3E-06 59.0 7.0 100 172-272 163-272 (422)
252 1ypw_A Transitional endoplasmi 94.8 0.024 8.2E-07 69.1 6.1 92 161-272 204-308 (806)
253 1in4_A RUVB, holliday junction 94.8 0.02 6.9E-07 62.0 4.9 48 160-207 24-76 (334)
254 2px0_A Flagellar biosynthesis 94.8 0.069 2.3E-06 56.3 8.7 86 181-269 104-190 (296)
255 2dhr_A FTSH; AAA+ protein, hex 94.8 0.06 2.1E-06 61.1 8.7 48 160-207 30-89 (499)
256 2w0m_A SSO2452; RECA, SSPF, un 94.7 0.1 3.5E-06 53.0 9.8 47 182-232 23-69 (235)
257 3c8u_A Fructokinase; YP_612366 94.6 0.038 1.3E-06 55.2 6.0 52 168-221 6-59 (208)
258 4a74_A DNA repair and recombin 94.6 0.15 5.1E-06 51.7 10.6 56 182-238 25-84 (231)
259 2bjv_A PSP operon transcriptio 94.6 0.02 7E-07 59.8 4.1 60 161-222 6-67 (265)
260 3pxi_A Negative regulator of g 94.2 0.038 1.3E-06 67.5 5.7 60 161-222 491-559 (758)
261 2ga8_A Hypothetical 39.9 kDa p 94.1 0.061 2.1E-06 57.3 6.5 45 164-208 2-50 (359)
262 1pzn_A RAD51, DNA repair and r 94.1 0.14 4.7E-06 55.6 9.5 57 181-238 130-190 (349)
263 1vma_A Cell division protein F 94.1 0.34 1.1E-05 51.2 12.1 38 181-220 103-140 (306)
264 2hf9_A Probable hydrogenase ni 94.1 0.05 1.7E-06 55.1 5.6 40 168-207 24-63 (226)
265 2r44_A Uncharacterized protein 94.1 0.065 2.2E-06 58.0 6.9 45 161-207 27-71 (331)
266 1qhx_A CPT, protein (chloramph 94.1 0.029 1E-06 54.3 3.7 25 183-207 4-28 (178)
267 3kb2_A SPBC2 prophage-derived 94.0 0.032 1.1E-06 53.7 3.8 25 183-207 2-26 (173)
268 3vaa_A Shikimate kinase, SK; s 94.0 0.034 1.1E-06 55.1 4.0 27 181-207 24-50 (199)
269 2xxa_A Signal recognition part 94.0 0.41 1.4E-05 53.2 13.2 88 181-270 99-192 (433)
270 1ojl_A Transcriptional regulat 94.0 0.036 1.2E-06 59.0 4.4 47 161-207 2-50 (304)
271 1r6b_X CLPA protein; AAA+, N-t 93.9 0.082 2.8E-06 64.6 8.1 102 162-273 459-569 (758)
272 3fwy_A Light-independent proto 93.8 0.043 1.5E-06 58.4 4.7 41 180-222 46-86 (314)
273 1ixz_A ATP-dependent metallopr 93.8 0.079 2.7E-06 54.8 6.5 48 160-207 15-74 (254)
274 3dm5_A SRP54, signal recogniti 93.8 0.43 1.5E-05 52.8 12.6 29 181-209 99-127 (443)
275 2r62_A Cell division protease 93.7 0.023 7.9E-07 59.5 2.4 48 161-208 11-70 (268)
276 3cf2_A TER ATPase, transitiona 93.7 0.087 3E-06 63.1 7.5 93 160-272 476-581 (806)
277 1kgd_A CASK, peripheral plasma 93.7 0.036 1.2E-06 53.8 3.5 24 183-206 6-29 (180)
278 3trf_A Shikimate kinase, SK; a 93.6 0.041 1.4E-06 53.7 3.9 26 182-207 5-30 (185)
279 3bh0_A DNAB-like replicative h 93.6 0.42 1.4E-05 50.9 12.1 52 182-237 68-119 (315)
280 3lw7_A Adenylate kinase relate 93.6 0.034 1.1E-06 53.8 3.2 20 183-202 2-21 (179)
281 1g8p_A Magnesium-chelatase 38 93.6 0.037 1.3E-06 60.6 3.8 48 160-207 23-70 (350)
282 1xjc_A MOBB protein homolog; s 93.5 0.056 1.9E-06 51.2 4.2 28 181-208 3-30 (169)
283 3uie_A Adenylyl-sulfate kinase 93.5 0.054 1.8E-06 53.6 4.4 28 180-207 23-50 (200)
284 2ck3_D ATP synthase subunit be 93.4 0.38 1.3E-05 53.2 11.4 98 173-271 143-263 (482)
285 3rfe_A Platelet glycoprotein I 93.4 0.094 3.2E-06 47.4 5.6 33 542-574 32-65 (130)
286 2j37_W Signal recognition part 93.4 0.74 2.5E-05 52.1 14.0 38 181-220 100-137 (504)
287 2wsm_A Hydrogenase expression/ 93.4 0.059 2E-06 54.3 4.7 42 166-207 14-55 (221)
288 1zp6_A Hypothetical protein AT 93.4 0.046 1.6E-06 53.7 3.7 25 181-205 8-32 (191)
289 1ly1_A Polynucleotide kinase; 93.4 0.047 1.6E-06 53.0 3.8 22 183-204 3-24 (181)
290 1kag_A SKI, shikimate kinase I 93.3 0.037 1.3E-06 53.3 2.9 25 183-207 5-29 (173)
291 1j8m_F SRP54, signal recogniti 93.3 0.5 1.7E-05 49.7 11.8 87 182-270 98-189 (297)
292 3tqc_A Pantothenate kinase; bi 93.2 0.22 7.7E-06 52.7 8.9 27 181-207 91-117 (321)
293 1odf_A YGR205W, hypothetical 3 93.2 0.1 3.6E-06 54.7 6.3 29 180-208 29-57 (290)
294 1nks_A Adenylate kinase; therm 93.2 0.054 1.9E-06 53.2 4.0 26 183-208 2-27 (194)
295 4eun_A Thermoresistant glucoki 93.2 0.057 1.9E-06 53.5 4.0 27 180-206 27-53 (200)
296 3t61_A Gluconokinase; PSI-biol 93.1 0.046 1.6E-06 54.3 3.2 26 182-207 18-43 (202)
297 3kl4_A SRP54, signal recogniti 93.0 0.47 1.6E-05 52.5 11.5 88 181-270 96-188 (433)
298 2ehv_A Hypothetical protein PH 93.0 0.2 7E-06 51.4 8.2 24 182-205 30-53 (251)
299 3e70_C DPA, signal recognition 93.0 1.3 4.4E-05 47.2 14.5 58 180-239 127-185 (328)
300 1kht_A Adenylate kinase; phosp 93.0 0.06 2.1E-06 52.8 3.9 26 183-208 4-29 (192)
301 1fx0_B ATP synthase beta chain 93.0 0.23 7.7E-06 55.2 8.7 98 173-271 155-276 (498)
302 3hws_A ATP-dependent CLP prote 92.9 0.084 2.9E-06 58.0 5.4 46 162-207 16-76 (363)
303 1via_A Shikimate kinase; struc 92.9 0.053 1.8E-06 52.3 3.3 25 183-207 5-29 (175)
304 1knq_A Gluconate kinase; ALFA/ 92.9 0.069 2.3E-06 51.5 4.1 25 182-206 8-32 (175)
305 3iij_A Coilin-interacting nucl 92.9 0.053 1.8E-06 52.6 3.3 26 182-207 11-36 (180)
306 2rhm_A Putative kinase; P-loop 92.9 0.07 2.4E-06 52.4 4.2 26 182-207 5-30 (193)
307 1zuh_A Shikimate kinase; alpha 92.9 0.065 2.2E-06 51.3 3.9 27 181-207 6-32 (168)
308 2ze6_A Isopentenyl transferase 92.9 0.065 2.2E-06 55.2 4.1 25 183-207 2-26 (253)
309 2yvu_A Probable adenylyl-sulfa 92.8 0.08 2.7E-06 51.6 4.5 29 181-209 12-40 (186)
310 2dr3_A UPF0273 protein PH0284; 92.8 0.41 1.4E-05 48.9 10.2 47 182-232 23-69 (247)
311 1um8_A ATP-dependent CLP prote 92.8 0.097 3.3E-06 57.8 5.6 26 182-207 72-97 (376)
312 3nbx_X ATPase RAVA; AAA+ ATPas 92.7 0.069 2.3E-06 60.7 4.3 44 162-207 23-66 (500)
313 2jaq_A Deoxyguanosine kinase; 92.7 0.067 2.3E-06 53.1 3.8 24 184-207 2-25 (205)
314 1y63_A LMAJ004144AAA protein; 92.6 0.075 2.6E-06 51.7 4.0 25 181-205 9-33 (184)
315 2bdt_A BH3686; alpha-beta prot 92.6 0.069 2.4E-06 52.3 3.8 22 183-204 3-24 (189)
316 3tau_A Guanylate kinase, GMP k 92.6 0.07 2.4E-06 53.2 3.8 27 181-207 7-33 (208)
317 2qor_A Guanylate kinase; phosp 92.6 0.06 2E-06 53.5 3.3 26 181-206 11-36 (204)
318 3l0o_A Transcription terminati 92.6 0.075 2.6E-06 56.8 4.0 51 172-223 164-216 (427)
319 1gvn_B Zeta; postsegregational 92.5 0.12 4.1E-06 54.3 5.6 26 181-206 32-57 (287)
320 3ney_A 55 kDa erythrocyte memb 92.5 0.074 2.5E-06 51.9 3.7 27 181-207 18-44 (197)
321 3tr0_A Guanylate kinase, GMP k 92.5 0.068 2.3E-06 53.1 3.5 25 182-206 7-31 (205)
322 1ye8_A Protein THEP1, hypothet 92.4 0.086 2.9E-06 50.8 4.0 25 184-208 2-26 (178)
323 3a00_A Guanylate kinase, GMP k 92.4 0.059 2E-06 52.6 2.9 25 183-207 2-26 (186)
324 2iyv_A Shikimate kinase, SK; t 92.4 0.063 2.2E-06 52.3 3.1 25 183-207 3-27 (184)
325 1ex7_A Guanylate kinase; subst 92.3 0.067 2.3E-06 51.7 3.1 25 183-207 2-26 (186)
326 2c95_A Adenylate kinase 1; tra 92.3 0.083 2.8E-06 52.0 3.9 27 181-207 8-34 (196)
327 1ukz_A Uridylate kinase; trans 92.3 0.092 3.2E-06 52.0 4.2 27 180-206 13-39 (203)
328 1cke_A CK, MSSA, protein (cyti 92.3 0.081 2.8E-06 53.6 3.9 25 183-207 6-30 (227)
329 2if2_A Dephospho-COA kinase; a 92.2 0.072 2.4E-06 52.9 3.3 22 183-204 2-23 (204)
330 2bbw_A Adenylate kinase 4, AK4 92.2 0.086 2.9E-06 54.2 4.0 27 181-207 26-52 (246)
331 1uf9_A TT1252 protein; P-loop, 92.2 0.086 3E-06 52.2 3.9 26 180-205 6-31 (203)
332 3umf_A Adenylate kinase; rossm 92.2 0.1 3.5E-06 51.9 4.3 28 180-207 27-54 (217)
333 3cm0_A Adenylate kinase; ATP-b 92.2 0.095 3.2E-06 51.1 4.1 25 183-207 5-29 (186)
334 1lvg_A Guanylate kinase, GMP k 92.2 0.065 2.2E-06 52.9 2.9 26 182-207 4-29 (198)
335 1e6c_A Shikimate kinase; phosp 92.2 0.075 2.6E-06 51.1 3.3 25 183-207 3-27 (173)
336 1tev_A UMP-CMP kinase; ploop, 92.2 0.094 3.2E-06 51.6 4.1 25 183-207 4-28 (196)
337 3asz_A Uridine kinase; cytidin 92.1 0.099 3.4E-06 52.2 4.3 27 181-207 5-31 (211)
338 3cmu_A Protein RECA, recombina 92.1 0.31 1.1E-05 64.0 9.6 84 181-271 1426-1515(2050)
339 1ls1_A Signal recognition part 92.1 0.47 1.6E-05 49.9 9.6 88 181-270 97-189 (295)
340 2j41_A Guanylate kinase; GMP, 92.1 0.09 3.1E-06 52.3 3.9 25 182-206 6-30 (207)
341 2plr_A DTMP kinase, probable t 92.0 0.1 3.4E-06 52.2 4.1 27 183-209 5-31 (213)
342 2bwj_A Adenylate kinase 5; pho 92.0 0.089 3.1E-06 51.9 3.7 25 183-207 13-37 (199)
343 4gp7_A Metallophosphoesterase; 91.9 0.079 2.7E-06 50.8 3.1 23 181-203 8-30 (171)
344 3tlx_A Adenylate kinase 2; str 91.9 0.21 7.1E-06 51.1 6.4 28 180-207 27-54 (243)
345 3a4m_A L-seryl-tRNA(SEC) kinas 91.9 0.1 3.5E-06 54.0 4.1 26 182-207 4-29 (260)
346 2pt5_A Shikimate kinase, SK; a 91.9 0.11 3.6E-06 49.7 3.9 24 184-207 2-25 (168)
347 2qt1_A Nicotinamide riboside k 91.9 0.096 3.3E-06 52.1 3.8 25 181-205 20-44 (207)
348 2grj_A Dephospho-COA kinase; T 91.8 0.11 3.7E-06 50.7 4.0 27 180-206 10-36 (192)
349 2cdn_A Adenylate kinase; phosp 91.7 0.11 3.7E-06 51.5 3.9 26 182-207 20-45 (201)
350 1qf9_A UMP/CMP kinase, protein 91.7 0.11 3.7E-06 51.0 3.9 26 182-207 6-31 (194)
351 1htw_A HI0065; nucleotide-bind 91.7 0.11 3.6E-06 48.9 3.6 27 180-206 31-57 (158)
352 1jjv_A Dephospho-COA kinase; P 91.7 0.098 3.4E-06 52.0 3.6 22 183-204 3-24 (206)
353 1znw_A Guanylate kinase, GMP k 91.6 0.093 3.2E-06 52.2 3.4 26 181-206 19-44 (207)
354 2z0h_A DTMP kinase, thymidylat 91.5 0.32 1.1E-05 47.7 7.2 50 184-235 2-51 (197)
355 4e22_A Cytidylate kinase; P-lo 91.5 0.1 3.5E-06 53.8 3.6 27 181-207 26-52 (252)
356 2vli_A Antibiotic resistance p 91.5 0.082 2.8E-06 51.4 2.7 26 182-207 5-30 (183)
357 3gmt_A Adenylate kinase; ssgci 91.5 0.68 2.3E-05 46.1 9.3 25 183-207 9-33 (230)
358 1aky_A Adenylate kinase; ATP:A 91.4 0.12 4.2E-06 51.9 4.0 26 182-207 4-29 (220)
359 2ffh_A Protein (FFH); SRP54, s 91.4 1.1 3.6E-05 49.6 11.7 87 181-270 97-189 (425)
360 3aez_A Pantothenate kinase; tr 91.4 0.12 4E-06 55.0 3.9 42 180-221 88-129 (312)
361 2f1r_A Molybdopterin-guanine d 91.4 0.098 3.4E-06 49.9 3.0 28 182-209 2-29 (171)
362 2pbr_A DTMP kinase, thymidylat 91.4 0.12 4.2E-06 50.6 3.9 24 184-207 2-25 (195)
363 1z6g_A Guanylate kinase; struc 91.3 0.092 3.1E-06 52.7 2.9 26 181-206 22-47 (218)
364 3end_A Light-independent proto 91.3 0.24 8.3E-06 52.7 6.5 44 179-224 38-81 (307)
365 2p5t_B PEZT; postsegregational 91.3 0.16 5.5E-06 52.3 4.8 27 181-207 31-57 (253)
366 1rj9_A FTSY, signal recognitio 91.3 0.15 5E-06 54.0 4.5 29 181-209 101-129 (304)
367 1np6_A Molybdopterin-guanine d 91.2 0.15 5.3E-06 48.7 4.2 28 181-208 5-32 (174)
368 1g41_A Heat shock protein HSLU 91.2 0.14 4.7E-06 56.8 4.4 48 161-208 15-76 (444)
369 2wwf_A Thymidilate kinase, put 91.2 0.12 4.2E-06 51.5 3.7 32 182-214 10-41 (212)
370 1nn5_A Similar to deoxythymidy 91.1 0.14 4.7E-06 51.3 4.1 32 182-214 9-40 (215)
371 3nwj_A ATSK2; P loop, shikimat 91.1 0.11 3.9E-06 53.0 3.3 26 182-207 48-73 (250)
372 1gtv_A TMK, thymidylate kinase 91.1 0.075 2.6E-06 53.2 2.0 26 183-208 1-26 (214)
373 2jeo_A Uridine-cytidine kinase 91.0 0.15 5E-06 52.4 4.1 26 181-206 24-49 (245)
374 1uj2_A Uridine-cytidine kinase 91.0 0.14 4.8E-06 52.8 4.0 28 180-207 20-47 (252)
375 3fb4_A Adenylate kinase; psych 90.9 0.14 4.8E-06 51.3 3.9 24 184-207 2-25 (216)
376 1s96_A Guanylate kinase, GMP k 90.9 0.13 4.4E-06 51.5 3.5 27 181-207 15-41 (219)
377 1tue_A Replication protein E1; 90.9 0.19 6.6E-06 48.7 4.5 38 170-207 45-83 (212)
378 3p32_A Probable GTPase RV1496/ 90.9 0.31 1E-05 53.1 6.8 39 170-208 65-105 (355)
379 1m7g_A Adenylylsulfate kinase; 90.8 0.16 5.5E-06 50.6 4.2 28 180-207 23-50 (211)
380 3r20_A Cytidylate kinase; stru 90.7 0.16 5.3E-06 51.1 3.9 26 182-207 9-34 (233)
381 1zak_A Adenylate kinase; ATP:A 90.7 0.13 4.3E-06 51.9 3.3 26 182-207 5-30 (222)
382 1zd8_A GTP:AMP phosphotransfer 90.7 0.13 4.6E-06 51.9 3.5 26 182-207 7-32 (227)
383 2zts_A Putative uncharacterize 90.7 0.66 2.3E-05 47.5 8.9 49 182-233 30-78 (251)
384 2pez_A Bifunctional 3'-phospho 90.6 0.15 5.3E-06 49.2 3.8 27 182-208 5-31 (179)
385 4eaq_A DTMP kinase, thymidylat 90.6 0.33 1.1E-05 48.9 6.3 32 181-214 25-56 (229)
386 2i3b_A HCR-ntpase, human cance 90.6 0.14 4.7E-06 49.9 3.3 25 183-207 2-26 (189)
387 4a1f_A DNAB helicase, replicat 90.6 0.7 2.4E-05 49.3 9.0 52 182-237 46-97 (338)
388 1pgv_A TMD-1, tropomodulin TMD 90.6 0.17 5.9E-06 49.1 3.9 115 513-634 40-167 (197)
389 3dl0_A Adenylate kinase; phosp 90.4 0.16 5.4E-06 50.9 3.8 23 184-206 2-24 (216)
390 2b8t_A Thymidine kinase; deoxy 90.4 0.13 4.3E-06 51.4 2.9 86 181-272 11-100 (223)
391 2v54_A DTMP kinase, thymidylat 90.3 0.15 5.3E-06 50.4 3.5 25 182-206 4-28 (204)
392 3d3q_A TRNA delta(2)-isopenten 90.2 0.18 6E-06 53.7 4.0 25 183-207 8-32 (340)
393 2onk_A Molybdate/tungstate ABC 90.2 0.16 5.4E-06 51.6 3.5 26 180-206 23-48 (240)
394 3k1j_A LON protease, ATP-depen 90.2 0.18 6E-06 59.5 4.4 45 161-207 41-85 (604)
395 2yhs_A FTSY, cell division pro 90.1 0.38 1.3E-05 53.8 6.7 28 181-208 292-319 (503)
396 2f6r_A COA synthase, bifunctio 90.0 0.17 5.9E-06 52.9 3.7 24 181-204 74-97 (281)
397 1vht_A Dephospho-COA kinase; s 90.0 0.18 6.2E-06 50.5 3.8 23 182-204 4-26 (218)
398 3b9q_A Chloroplast SRP recepto 90.0 0.23 8E-06 52.4 4.7 28 181-208 99-126 (302)
399 3ake_A Cytidylate kinase; CMP 89.9 0.2 6.8E-06 49.8 3.9 24 184-207 4-27 (208)
400 1cr0_A DNA primase/helicase; R 89.9 0.51 1.7E-05 49.9 7.3 53 181-236 34-86 (296)
401 3mfy_A V-type ATP synthase alp 89.9 0.64 2.2E-05 52.1 8.1 96 173-272 217-335 (588)
402 3crm_A TRNA delta(2)-isopenten 89.8 0.2 6.9E-06 52.9 3.9 25 183-207 6-30 (323)
403 3lv8_A DTMP kinase, thymidylat 89.6 0.53 1.8E-05 47.4 6.8 52 182-234 27-78 (236)
404 2q6t_A DNAB replication FORK h 89.6 1.6 5.4E-05 49.1 11.5 52 182-236 200-251 (444)
405 3sr0_A Adenylate kinase; phosp 89.6 0.22 7.6E-06 49.1 3.9 24 184-207 2-25 (206)
406 3be4_A Adenylate kinase; malar 89.6 0.2 7E-06 50.1 3.7 25 183-207 6-30 (217)
407 3lnc_A Guanylate kinase, GMP k 89.6 0.12 4.3E-06 52.3 2.1 25 182-206 27-52 (231)
408 3b85_A Phosphate starvation-in 89.5 0.16 5.3E-06 50.4 2.7 24 182-205 22-45 (208)
409 2c61_A A-type ATP synthase non 89.5 0.34 1.2E-05 53.6 5.6 99 173-271 142-259 (469)
410 2xb4_A Adenylate kinase; ATP-b 89.5 0.22 7.5E-06 50.1 3.9 24 184-207 2-25 (223)
411 3ld9_A DTMP kinase, thymidylat 89.5 0.54 1.8E-05 46.8 6.6 56 180-235 19-74 (223)
412 3tif_A Uncharacterized ABC tra 89.5 0.18 6.2E-06 51.1 3.2 26 181-206 30-55 (235)
413 1ak2_A Adenylate kinase isoenz 89.5 0.24 8.3E-06 50.2 4.2 26 182-207 16-41 (233)
414 1e4v_A Adenylate kinase; trans 89.4 0.21 7.3E-06 49.8 3.7 24 184-207 2-25 (214)
415 2pcj_A ABC transporter, lipopr 89.4 0.15 5.3E-06 51.2 2.6 25 181-205 29-53 (224)
416 3exa_A TRNA delta(2)-isopenten 89.4 0.22 7.5E-06 52.0 3.8 25 182-206 3-27 (322)
417 3vr4_A V-type sodium ATPase ca 89.3 0.81 2.8E-05 51.6 8.5 95 173-271 222-339 (600)
418 3cmw_A Protein RECA, recombina 89.3 0.8 2.7E-05 59.4 9.6 85 182-273 732-822 (1706)
419 1yrb_A ATP(GTP)binding protein 89.3 0.27 9.2E-06 50.9 4.6 27 181-207 13-39 (262)
420 1sq5_A Pantothenate kinase; P- 89.3 0.22 7.6E-06 53.0 3.9 28 180-207 78-105 (308)
421 1zu4_A FTSY; GTPase, signal re 89.2 0.29 9.9E-06 52.1 4.8 38 181-220 104-141 (320)
422 3vr4_D V-type sodium ATPase su 89.2 0.63 2.2E-05 51.2 7.4 97 173-271 141-258 (465)
423 2cbz_A Multidrug resistance-as 89.1 0.18 6.1E-06 51.2 2.8 26 181-206 30-55 (237)
424 4tmk_A Protein (thymidylate ki 89.1 0.65 2.2E-05 46.0 6.9 52 183-235 4-55 (213)
425 1jr3_D DNA polymerase III, del 89.0 1.3 4.4E-05 47.9 9.9 53 180-233 16-68 (343)
426 1oix_A RAS-related protein RAB 89.0 0.22 7.4E-06 48.7 3.4 25 182-206 29-53 (191)
427 2e87_A Hypothetical protein PH 89.0 4.6 0.00016 43.7 14.4 26 180-205 165-190 (357)
428 2r6a_A DNAB helicase, replicat 88.8 1.6 5.5E-05 49.2 10.8 50 182-234 203-252 (454)
429 1a7j_A Phosphoribulokinase; tr 88.8 0.16 5.5E-06 53.3 2.4 27 181-207 4-30 (290)
430 3a8t_A Adenylate isopentenyltr 88.8 0.21 7.3E-06 52.9 3.3 26 181-206 39-64 (339)
431 3gqb_B V-type ATP synthase bet 88.8 0.36 1.2E-05 53.0 5.2 99 173-271 137-261 (464)
432 2og2_A Putative signal recogni 88.8 0.32 1.1E-05 52.5 4.7 28 181-208 156-183 (359)
433 2dyk_A GTP-binding protein; GT 88.8 0.27 9.3E-06 46.2 3.8 23 183-205 2-24 (161)
434 1b0u_A Histidine permease; ABC 88.8 0.19 6.4E-06 51.9 2.8 26 181-206 31-56 (262)
435 2d2e_A SUFC protein; ABC-ATPas 88.8 0.22 7.6E-06 51.0 3.4 25 181-205 28-52 (250)
436 3foz_A TRNA delta(2)-isopenten 88.8 0.27 9.3E-06 51.2 3.9 26 181-206 9-34 (316)
437 1pgv_A TMD-1, tropomodulin TMD 88.7 0.42 1.4E-05 46.3 5.0 93 535-635 35-137 (197)
438 3gfo_A Cobalt import ATP-bindi 88.6 0.22 7.6E-06 51.7 3.2 26 181-206 33-58 (275)
439 2olj_A Amino acid ABC transpor 88.5 0.2 7E-06 51.6 2.8 26 181-206 49-74 (263)
440 2wji_A Ferrous iron transport 88.5 0.28 9.4E-06 46.6 3.6 22 183-204 4-25 (165)
441 1ji0_A ABC transporter; ATP bi 88.5 0.21 7.1E-06 50.9 2.8 26 181-206 31-56 (240)
442 2zu0_C Probable ATP-dependent 88.4 0.24 8.3E-06 51.3 3.4 25 181-205 45-69 (267)
443 2pze_A Cystic fibrosis transme 88.4 0.21 7.1E-06 50.4 2.8 26 181-206 33-58 (229)
444 1mv5_A LMRA, multidrug resista 88.4 0.22 7.7E-06 50.7 3.1 26 181-206 27-52 (243)
445 1sgw_A Putative ABC transporte 88.4 0.18 6.1E-06 50.1 2.2 25 182-206 35-59 (214)
446 3hjn_A DTMP kinase, thymidylat 88.4 1.5 5.2E-05 42.7 9.0 51 184-236 2-52 (197)
447 2ff7_A Alpha-hemolysin translo 88.3 0.21 7.3E-06 51.0 2.8 26 181-206 34-59 (247)
448 4edh_A DTMP kinase, thymidylat 88.3 0.88 3E-05 45.1 7.2 33 182-215 6-38 (213)
449 4g1u_C Hemin import ATP-bindin 88.3 0.24 8.1E-06 51.2 3.2 26 181-206 36-61 (266)
450 2zej_A Dardarin, leucine-rich 88.2 0.24 8.1E-06 48.1 3.0 21 184-204 4-24 (184)
451 1g6h_A High-affinity branched- 88.2 0.22 7.6E-06 51.2 2.9 26 181-206 32-57 (257)
452 2f9l_A RAB11B, member RAS onco 88.2 0.28 9.7E-06 48.2 3.6 24 182-205 5-28 (199)
453 2ged_A SR-beta, signal recogni 88.0 0.52 1.8E-05 45.9 5.5 25 181-205 47-71 (193)
454 2ck3_A ATP synthase subunit al 88.0 0.7 2.4E-05 51.5 6.8 100 173-272 152-273 (510)
455 2eyu_A Twitching motility prot 88.0 0.3 1E-05 50.3 3.8 28 180-207 23-50 (261)
456 3cmu_A Protein RECA, recombina 88.0 1.1 3.8E-05 58.9 9.6 84 182-272 383-472 (2050)
457 2v9p_A Replication protein E1; 88.0 0.3 1E-05 51.3 3.7 27 180-206 124-150 (305)
458 2ixe_A Antigen peptide transpo 87.9 0.23 7.9E-06 51.5 2.8 26 181-206 44-69 (271)
459 2ghi_A Transport protein; mult 87.9 0.23 7.9E-06 51.2 2.8 26 181-206 45-70 (260)
460 1cp2_A CP2, nitrogenase iron p 87.9 0.35 1.2E-05 50.3 4.3 38 183-222 2-39 (269)
461 1vpl_A ABC transporter, ATP-bi 87.8 0.24 8.3E-06 50.8 2.9 26 181-206 40-65 (256)
462 1ltq_A Polynucleotide kinase; 87.8 0.3 1E-05 51.9 3.8 23 183-205 3-25 (301)
463 1g8f_A Sulfate adenylyltransfe 87.8 0.55 1.9E-05 53.2 6.0 46 163-208 374-421 (511)
464 1q3t_A Cytidylate kinase; nucl 87.8 0.36 1.2E-05 49.0 4.2 27 181-207 15-41 (236)
465 2qi9_C Vitamin B12 import ATP- 87.7 0.24 8.3E-06 50.5 2.8 25 182-206 26-50 (249)
466 2afh_E Nitrogenase iron protei 87.7 0.38 1.3E-05 50.6 4.5 39 182-222 2-40 (289)
467 2r8r_A Sensor protein; KDPD, P 87.6 0.39 1.3E-05 47.5 4.1 37 184-222 8-44 (228)
468 3cmw_A Protein RECA, recombina 87.4 1.2 4.2E-05 57.7 9.5 84 182-272 1431-1520(1706)
469 3cwq_A Para family chromosome 87.4 0.78 2.7E-05 45.4 6.3 43 184-229 2-45 (209)
470 2yz2_A Putative ABC transporte 87.4 0.26 8.9E-06 51.0 2.8 25 181-205 32-56 (266)
471 2ihy_A ABC transporter, ATP-bi 87.3 0.27 9.2E-06 51.2 2.9 26 181-206 46-71 (279)
472 2nq2_C Hypothetical ABC transp 87.3 0.26 9E-06 50.5 2.8 26 181-206 30-55 (253)
473 3v9p_A DTMP kinase, thymidylat 87.2 0.82 2.8E-05 45.7 6.3 54 182-236 25-81 (227)
474 1z2a_A RAS-related protein RAB 87.1 0.34 1.2E-05 45.9 3.3 24 182-205 5-28 (168)
475 2ce2_X GTPase HRAS; signaling 87.1 0.32 1.1E-05 45.8 3.2 22 184-205 5-26 (166)
476 3eph_A TRNA isopentenyltransfe 87.1 0.37 1.3E-05 52.3 3.8 25 183-207 3-27 (409)
477 2r9v_A ATP synthase subunit al 87.0 0.58 2E-05 52.1 5.4 96 173-272 165-278 (515)
478 1tq4_A IIGP1, interferon-induc 87.0 0.44 1.5E-05 52.5 4.5 25 180-204 67-91 (413)
479 1svm_A Large T antigen; AAA+ f 87.0 0.67 2.3E-05 50.4 5.9 27 180-206 167-193 (377)
480 3con_A GTPase NRAS; structural 86.9 0.35 1.2E-05 47.1 3.3 23 183-205 22-44 (190)
481 1nlf_A Regulatory protein REPA 86.8 0.31 1.1E-05 51.0 3.1 26 182-207 30-55 (279)
482 2qmh_A HPR kinase/phosphorylas 86.8 0.33 1.1E-05 46.8 2.9 25 182-206 34-58 (205)
483 2qe7_A ATP synthase subunit al 86.7 0.59 2E-05 52.0 5.2 95 173-271 152-264 (502)
484 2v3c_C SRP54, signal recogniti 86.7 0.28 9.7E-06 54.6 2.8 37 182-220 99-135 (432)
485 1r8s_A ADP-ribosylation factor 86.7 0.39 1.3E-05 45.2 3.5 22 185-206 3-24 (164)
486 1q57_A DNA primase/helicase; d 86.6 1.9 6.4E-05 49.5 9.8 56 182-240 242-298 (503)
487 3f9v_A Minichromosome maintena 86.6 0.2 6.7E-06 58.7 1.5 45 162-206 296-351 (595)
488 3sop_A Neuronal-specific septi 86.6 0.36 1.2E-05 50.0 3.3 24 184-207 4-27 (270)
489 2wjg_A FEOB, ferrous iron tran 86.6 0.42 1.4E-05 46.3 3.8 23 183-205 8-30 (188)
490 3upu_A ATP-dependent DNA helic 86.6 1.2 4.1E-05 50.4 8.0 43 166-209 30-72 (459)
491 4gzl_A RAS-related C3 botulinu 86.4 0.42 1.4E-05 47.2 3.6 27 179-205 27-53 (204)
492 3ihw_A Centg3; RAS, centaurin, 86.3 0.39 1.3E-05 46.5 3.3 24 182-205 20-43 (184)
493 1c1y_A RAS-related protein RAP 86.3 0.4 1.4E-05 45.3 3.3 22 184-205 5-26 (167)
494 1zj6_A ADP-ribosylation factor 86.3 0.62 2.1E-05 45.1 4.8 34 171-205 6-39 (187)
495 3nh6_A ATP-binding cassette SU 86.2 0.28 9.6E-06 51.7 2.3 27 180-206 78-104 (306)
496 1u8z_A RAS-related protein RAL 86.2 0.4 1.4E-05 45.3 3.3 24 183-206 5-28 (168)
497 2ocp_A DGK, deoxyguanosine kin 86.2 0.46 1.6E-05 48.4 3.9 26 182-207 2-27 (241)
498 2nzj_A GTP-binding protein REM 86.2 0.38 1.3E-05 45.9 3.1 24 182-205 4-27 (175)
499 2pjz_A Hypothetical protein ST 86.1 0.34 1.2E-05 49.9 2.9 24 182-205 30-53 (263)
500 1z08_A RAS-related protein RAB 86.1 0.41 1.4E-05 45.4 3.3 23 183-205 7-29 (170)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.2e-41 Score=400.02 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=222.2
Q ss_pred cchHHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHH--HHhhccCCCEEEEEEeCCCc--CHHHHHHHHHHH
Q 037935 164 ESRVSTLKSIQNALTD---VNVSIIGVYGMGGIGKTTLVKEFAR--QAREKKLFDRVVFSEVSQTP--DIKKIQGEIAEK 236 (1085)
Q Consensus 164 ~gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~ 236 (1085)
+||+.++++|.++|.. .+.++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ ++..+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 5999999999999973 3689999999999999999999998 56777899999999999885 899999999999
Q ss_pred hCCCCC--------CchHHHHHHHHHHHHHcCC-cEEEEEeCCCCcccccccccccCCCCCCcEEEe-------------
Q 037935 237 LGLELS--------DEAEYRRASRLYERLKNEN-KILVILDNIWKYLDLDTIGIPFGNDHEGYNFLI------------- 294 (1085)
Q Consensus 237 l~~~~~--------~~~~~~~~~~~~~~l~~~~-~~LlvlDdv~~~~~~~~~~~~~~~~~~gs~ilv------------- 294 (1085)
++.... ..+.......+.+.+. ++ ||||||||||+.+++ .+ + ...||+|||
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGGCCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHc-CCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHHHcCC
Confidence 986521 1122233456666664 65 999999999998754 11 1 115677766
Q ss_pred -------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCC
Q 037935 295 -------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRELQTPSVVNF 367 (1085)
Q Consensus 295 -------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~ 367 (1085)
++|+.++||+||..+++.....+.+.+++++|+++|+|+||||+++|+.++.++ .+|...+.. .. +..
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~---~l-~~~ 358 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNN---KL-ESR 358 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHH---HH-HHH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHH---Hh-hcc
Confidence 899999999999999975544467788999999999999999999999988664 233333322 11 100
Q ss_pred CCCcccchhhHHHHHhcCChHHHHHHHH-----------hccccCCCCCHHHHHHHHhhc--CCCCCC---chHHHHHHH
Q 037935 368 EGVPAETYSSIELSFKYLKGEQLKKIFL-----------LCSLIGNSFYLIDLLRYSMGL--GLFHGV---NKMEDARNK 431 (1085)
Q Consensus 368 ~~~~~~~~~~l~~sy~~L~~~~~k~cf~-----------~~s~fp~~i~~~~li~~w~~~--g~~~~~---~~~~~~~~~ 431 (1085)
...++..++.+||++||+ ++|.||+ |||+||++.... +++|+|+ ||+... .+.+++++
T Consensus 359 --~~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 359 --GLVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp --CSSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-
T ss_pred --cHHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH-
Confidence 134688999999999997 7999999 999999984433 8999999 999643 34555554
Q ss_pred HHHHHHHHhHcccceecC--CcceEEEcHHHHHHHHHHhhccc
Q 037935 432 LYALVHELRDCCLLLEGD--RNETFYMHDVVCDVAVSIACRDQ 472 (1085)
Q Consensus 432 ~~~~~~~L~~~~ll~~~~--~~~~~~mHdl~~~~~~~~~~~e~ 472 (1085)
++++|+++||++... ...+|+|||++|+||++++.+++
T Consensus 433 ---~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 433 ---RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp ---HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred ---HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 489999999998753 45689999999999999887654
No 2
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-33 Score=346.93 Aligned_cols=539 Identities=16% Similarity=0.123 Sum_probs=317.6
Q ss_pred ecCccccCCCccccccceEEEeeccCccccccc--CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccC
Q 037935 478 RNDAVWEWPDGDALKKCYAISLLNSSIHEVSLE--FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFS 555 (1085)
Q Consensus 478 ~~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~ 555 (1085)
.+..+...|. ..+.++++|++++|.+..++.. ..+++|++|++++|. +..+++..|.++++|++|+|++|.++.
T Consensus 12 s~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 12 SHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp CSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred CCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc---cCccCHHHHhcccCcCEEECCCCccCc
Confidence 3444444443 4567899999999999988763 388999999999987 677777789999999999999999999
Q ss_pred Cch-hhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEec
Q 037935 556 LPS-SIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVE 634 (1085)
Q Consensus 556 lp~-~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 634 (1085)
+|. .|+++++|++|++++| .+..+|+..|+++++|++|++++|.+. ...+..+.++++|++|++++|
T Consensus 88 l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLS-----------STKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCS-----------CCCCCSSSCCTTCCEEECCSS
T ss_pred cChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCccc-----------ccCchhhcccccCCEEEccCC
Confidence 986 6999999999999999 899998777899999999999999884 333445778999999999999
Q ss_pred cCCCCCCcc----cccccceeeEEecCCCcccccccccccccccccccceeehhh-------------hhhccccccccc
Q 037935 635 DDSILPDGL----FTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIV-------------MALELNAINVDE 697 (1085)
Q Consensus 635 ~~~~~~~~~----~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~-------------~~~~L~~l~L~~ 697 (1085)
.+..++... ..++|+.|+++.+.-.... ...+....++..+.+.... ....|+.+++..
T Consensus 156 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFS----PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231 (680)
T ss_dssp CCCCBCHHHHGGGTTCEESEEECTTCCCCCBC----TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred cccccCHHHhhccccccccEEECCCCcccccC----hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence 988776542 4578888888654211000 0011111222222211110 012344555555
Q ss_pred ccccCCCCCccccccc--ccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEE
Q 037935 698 IWHYNQLPAMVPCFQS--LTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTL 775 (1085)
Q Consensus 698 ~~~~~~~p~~~~~l~~--L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L 775 (1085)
+...+..|.++..++. |+.|++++|.. ..++ +..++.+++|++|++++|.. ..+... ....+++|+.|
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l-~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~-------~~~~l~~L~~L 301 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNL-NVVG-NDSFAWLPQLEYFFLEYNNI-QHLFSH-------SLHGLFNVRYL 301 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCC-CEEC-TTTTTTCTTCCEEECCSCCB-SEECTT-------TTTTCTTCCEE
T ss_pred CcccccChhHhhccCcCCCCEEECCCCCc-CccC-cccccCcccccEeeCCCCcc-CccChh-------hhcCCCCccEE
Confidence 4444445555555543 66666666543 2322 23456666666666666642 111110 01134555555
Q ss_pred ecCCCCccc-----ccc--CCCcccCCCcccceeeccCCCcccccCCCCCC-------CCCC----CCCCcccc-cccCC
Q 037935 776 KLDGLPELR-----CLY--PGMHTSEWPALKNLVACNCDKITLSQNDENDQ-------FGVP----AQQPLFSF-KKILP 836 (1085)
Q Consensus 776 ~l~~~~~l~-----~~~--~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~-------~~~~----~~~~l~~~-~~~l~ 836 (1085)
+++++..-. .++ .......+++|++|++.++..-...+...... ...+ ...+...+ ....+
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 554321000 000 00012234444444444442111111000000 0000 00000000 00124
Q ss_pred ccceeeeccCCceeeecccCCcCccCCceEEEecCCcccc-cchhHHhhccccceEEeecccccEEEecCCccccccccc
Q 037935 837 NLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLAC-FPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKL 915 (1085)
Q Consensus 837 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l 915 (1085)
+|+.|++++|.++.+.+..+.. +++|+.|++++|.++. ++...+..+++|+.|++++|.+..+. ...+..+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~~ 453 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSW--LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT------RNSFALV 453 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC------TTTTTTC
T ss_pred cCceEECCCCCCCeEChhhhhC--CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC------hhhhhcC
Confidence 6666666666666665555544 5667777777666653 44455566667777777776655442 2234456
Q ss_pred cccceeccCCccccc---ccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEeccccCcccccch---
Q 037935 916 ALIKRLNLTRLNHLQ---QLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTS--- 989 (1085)
Q Consensus 916 ~~L~~L~l~~c~~L~---~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~--- 989 (1085)
++|+.|+++++. ++ .++.. ...+++|+.|++++| ++..+++..+..+++|++|++++| +++.+...
T Consensus 454 ~~L~~L~l~~n~-l~~~~~~p~~-----~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 525 (680)
T 1ziw_A 454 PSLQRLMLRRVA-LKNVDSSPSP-----FQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHN-NLARLWKHANP 525 (680)
T ss_dssp TTCCEEECTTSC-CBCTTCSSCT-----TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTST
T ss_pred cccccchhcccc-ccccccCCcc-----cccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCC-Cccccchhhcc
Confidence 667777776632 22 22211 124677777777776 566666666777777888888764 35544211
Q ss_pred ----hhhhhcccccEEEEcCCcccccccccccccccccccceeeccccccccccccccceecCCCccccCCCcCceeecc
Q 037935 990 ----SKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSKLSALSLFDLDSLTSFSSGNYAFKLPSLQDLWVIG 1065 (1085)
Q Consensus 990 ----~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~ 1065 (1085)
..+..+++|++|++++|. ++.++.. ....+++|+.|+++++ .++.++.+.+ ..+++|+.|++++
T Consensus 526 ~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~---------~~~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 526 GGPIYFLKGLSHLHILNLESNG-FDEIPVE---------VFKDLFELKIIDLGLN-NLNTLPASVF-NNQVSLKSLNLQK 593 (680)
T ss_dssp TSCCCTTTTCTTCCEEECCSSC-CCCCCTT---------TTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECTT
T ss_pred CCcchhhcCCCCCCEEECCCCC-CCCCCHH---------HcccccCcceeECCCC-CCCcCCHhHh-CCCCCCCEEECCC
Confidence 124667778888887753 5554321 1122677888888764 5777777643 5678888888888
Q ss_pred CCCcccccCC
Q 037935 1066 CPKMKLFTKG 1075 (1085)
Q Consensus 1066 C~~l~~lp~~ 1075 (1085)
| ++..+|..
T Consensus 594 N-~l~~~~~~ 602 (680)
T 1ziw_A 594 N-LITSVEKK 602 (680)
T ss_dssp S-CCCBCCHH
T ss_pred C-cCCccChh
Confidence 6 67776654
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-34 Score=349.14 Aligned_cols=508 Identities=15% Similarity=0.095 Sum_probs=344.1
Q ss_pred ecCccccCCCccccccceEEEeeccCccccccc--CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccC
Q 037935 478 RNDAVWEWPDGDALKKCYAISLLNSSIHEVSLE--FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFS 555 (1085)
Q Consensus 478 ~~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~ 555 (1085)
.+..+...|. ..+.++++|++++|.+..++.. ..+++|++|++++|. +..+++..|.++++|++|+|++|.++.
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 19 MDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp TTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred cCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECCCCcccc
Confidence 3444555554 4568899999999999988762 389999999999997 677877789999999999999999999
Q ss_pred C-chhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEec
Q 037935 556 L-PSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVE 634 (1085)
Q Consensus 556 l-p~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 634 (1085)
+ |..|+++++|++|++++| .++.+++..++++++|++|++++|.+. ....+..++++++|++|++++|
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIH----------SCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCC----------CCCCCGGGGTCTTCCEEECCSS
T ss_pred cChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCccc----------ceechHhHhhcCCCCEEEccCC
Confidence 7 788999999999999999 999888666799999999999999883 1134677899999999999999
Q ss_pred cCCCCCCc-c-cccccc----eeeEEecCCCcccccccccccccccccccceeehhh-----------hhhccccccccc
Q 037935 635 DDSILPDG-L-FTKKLE----RFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIV-----------MALELNAINVDE 697 (1085)
Q Consensus 635 ~~~~~~~~-~-~l~~L~----~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~-----------~~~~L~~l~L~~ 697 (1085)
.+..++.. + .+.+|+ .++++.+. ...+........+++.+.+.... .+..|+.+.+..
T Consensus 164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-----l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 164 YIQTITVNDLQFLRENPQVNLSLDMSLNP-----IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp CCCEECTTTTHHHHHCTTCCCEEECTTCC-----CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred cceecChhhhhhhhccccccceeeccCCC-----cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence 98877654 3 455554 46554322 12222222222345555444321 112222222211
Q ss_pred ccc--cCC-------CCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCccccccccc
Q 037935 698 IWH--YNQ-------LPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFV 768 (1085)
Q Consensus 698 ~~~--~~~-------~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 768 (1085)
... ... .+..+..+ .++.+.+..++.+....+. +..+++|+.|++++|.. ..++ ....
T Consensus 239 ~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~-~~l~---------~l~~ 305 (606)
T 3vq2_A 239 GEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSI-KYLE---------DVPK 305 (606)
T ss_dssp ECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCC-CCCC---------CCCT
T ss_pred cccccCCcccccChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccc-hhhh---------hccc
Confidence 100 000 01111122 4666677555555554332 77888888888888762 2222 1224
Q ss_pred CCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCc
Q 037935 769 FPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDI 848 (1085)
Q Consensus 769 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l 848 (1085)
+++|+.|+++++.- ..++ . . .+++|++|.+.+|..+...+ ...+++|++|++++|.+
T Consensus 306 ~~~L~~L~l~~n~l-~~lp-~--~-~l~~L~~L~l~~n~~~~~~~------------------~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 306 HFKWQSLSIIRCQL-KQFP-T--L-DLPFLKSLTLTMNKGSISFK------------------KVALPSLSYLDLSRNAL 362 (606)
T ss_dssp TCCCSEEEEESCCC-SSCC-C--C-CCSSCCEEEEESCSSCEECC------------------CCCCTTCCEEECCSSCE
T ss_pred cccCCEEEcccccC-cccc-c--C-CCCccceeeccCCcCccchh------------------hccCCCCCEEECcCCcc
Confidence 67888888888754 4443 2 2 67888888888886554332 23478888888888887
Q ss_pred eeee--cccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCc
Q 037935 849 TMIL--QDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRL 926 (1085)
Q Consensus 849 ~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c 926 (1085)
+... +..+.. +++|++|++++|.++.+| ..+..+++|+.|++++|.+....+ ...+..+++|+.|++++|
T Consensus 363 ~~~~~~~~~~~~--~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 363 SFSGCCSYSDLG--TNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTE-----FSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp EEEEECCHHHHC--CSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTT-----TTTTTTCTTCCEEECTTS
T ss_pred CCCcchhhhhcc--CCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccC-----hhhhhccccCCEEECcCC
Confidence 7663 333333 688888888888888877 556788888888888888665432 124556788888888885
Q ss_pred ccccccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCC
Q 037935 927 NHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGC 1006 (1085)
Q Consensus 927 ~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c 1006 (1085)
. +.......+ ..+++|+.|++++|.-.....|..+..+++|++|++++| +++.. .+..+..+++|++|++++|
T Consensus 435 ~-l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 435 N-TKIDFDGIF----LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQI-SWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp C-CEECCTTTT----TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSS
T ss_pred C-CCccchhhh----cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCcc-ChhhhcccccCCEEECCCC
Confidence 4 433322221 246888888888884333245667888888999999886 46655 3455677888999999887
Q ss_pred cccccccccccccccccccceeeccccccccccccccceecCCCccccCC-CcCceeeccCCCc
Q 037935 1007 PAMTEVIISDEDETANLKEEIVFSKLSALSLFDLDSLTSFSSGNYAFKLP-SLQDLWVIGCPKM 1069 (1085)
Q Consensus 1007 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~-~L~~L~i~~C~~l 1069 (1085)
. ++.+.+. ....+++|+.|++++|+ ++++|.. ...++ +|++|++.+||-.
T Consensus 508 ~-l~~~~~~---------~~~~l~~L~~L~l~~N~-l~~~p~~--~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 508 N-LLFLDSS---------HYNQLYSLSTLDCSFNR-IETSKGI--LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp C-CSCEEGG---------GTTTCTTCCEEECTTSC-CCCEESC--GGGSCTTCCEEECCSCCCC
T ss_pred c-CCCcCHH---------HccCCCcCCEEECCCCc-CcccCHh--HhhhcccCcEEEccCCCcc
Confidence 4 5554331 12236888888888874 7788876 45676 5899998886543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.1e-34 Score=351.79 Aligned_cols=529 Identities=14% Similarity=0.052 Sum_probs=279.1
Q ss_pred cccceEEEeeccCccc-ccc--c-CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hh---hhc
Q 037935 491 LKKCYAISLLNSSIHE-VSL--E-FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SS---IGQ 562 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~~~~-l~~--~-~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~---i~~ 562 (1085)
..++++|++++|.+.. +|. . ..+++|++|++++|.. ...+|..++.++++|++|++++|.++..+ .. +++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l--~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE--ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc--CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 4466777777666542 333 2 2566777777766652 23334433456666666666666665532 22 455
Q ss_pred cccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCC-CCC
Q 037935 563 LTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSI-LPD 641 (1085)
Q Consensus 563 L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-~~~ 641 (1085)
+++|++|++++| .+....+ ++++++|++|++++|.+.. ..+. ++++++|++|++++|.+.. +|.
T Consensus 177 l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----------~~~~-l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 177 CGELKHLAISGN-KISGDVD--VSRCVNLEFLDVSSNNFST-----------GIPF-LGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp CTTCCEEECCSS-EEESCCB--CTTCTTCCEEECCSSCCCS-----------CCCB-CTTCCSCCEEECCSSCCCSCHHH
T ss_pred CCCCCEEECCCC-cccccCC--cccCCcCCEEECcCCcCCC-----------CCcc-cccCCCCCEEECcCCcCCCcccH
Confidence 666666666665 4444333 2555555666655555421 1111 4444555555555544432 222
Q ss_pred cc-cccccceeeEEecCCCcccccccccccccccccccceeeh----------hhh-hhcccccccccccccCCCCCccc
Q 037935 642 GL-FTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFC----------IVM-ALELNAINVDEIWHYNQLPAMVP 709 (1085)
Q Consensus 642 ~~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~----------~~~-~~~L~~l~L~~~~~~~~~p~~~~ 709 (1085)
.+ .+++|+.|+++.+.-.. .+.. . ...+++.+.+.. +.. ...|+.+++..+...+..|.++.
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~----~~~~-~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVG----PIPP-L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEE----SCCC-C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred HHhcCCCCCEEECCCCcccC----ccCc-c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 22 34444444443321000 0000 0 111111111111 111 14455666666665556677777
Q ss_pred ccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCC-cccEEecCCCCccccccC
Q 037935 710 CFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFP-RVTTLKLDGLPELRCLYP 788 (1085)
Q Consensus 710 ~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~ 788 (1085)
.+++|++|++++|.....+ |...++.+++|++|++++|.....++... ..++ +|+.|+++++.--...+.
T Consensus 316 ~l~~L~~L~L~~n~l~~~i-p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l--------~~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGEL-PMDTLLKMRGLKVLDLSFNEFSGELPESL--------TNLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp GCTTCCEEECCSSEEEEEC-CHHHHTTCTTCCEEECCSSEEEECCCTTH--------HHHTTTCSEEECCSSEEEEECCT
T ss_pred cCCCccEEECCCCcccCcC-CHHHHhcCCCCCEEeCcCCccCccccHHH--------HhhhcCCcEEEccCCCcCCCcCh
Confidence 7777777777776544344 33446677777777777765221111100 0122 455555544321111111
Q ss_pred CCcccCCCcccceeeccCCCcccccCCCCC-------CCCCCC-CCCcccccccCCccceeeeccCCceeeecccCCcCc
Q 037935 789 GMHTSEWPALKNLVACNCDKITLSQNDEND-------QFGVPA-QQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHL 860 (1085)
Q Consensus 789 ~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~-------~~~~~~-~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 860 (1085)
......+++|++|.+.+|......|..... ....+. .......+..+++|+.|++++|.+.+..+..+..
T Consensus 387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-- 464 (768)
T 3rgz_A 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-- 464 (768)
T ss_dssp TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG--
T ss_pred hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC--
Confidence 111111334444444444222111100000 000000 0011122355677777777777776655555544
Q ss_pred cCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchh
Q 037935 861 FGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKEL 940 (1085)
Q Consensus 861 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~ 940 (1085)
+++|++|++++|.++...+..+..+++|+.|++++|.++... +..+..+++|+.|++++|.-...++..
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~------p~~~~~l~~L~~L~L~~N~l~~~~p~~----- 533 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI------PKWIGRLENLAILKLSNNSFSGNIPAE----- 533 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC------CGGGGGCTTCCEEECCSSCCEEECCGG-----
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC------ChHHhcCCCCCEEECCCCcccCcCCHH-----
Confidence 677888888877777555556677788888888888766443 234566778888888885433344431
Q ss_pred hhHhhhhceeeeecccccccc-----------------------------------------------------------
Q 037935 941 DFIFQHLQILRVLHCQNLLSL----------------------------------------------------------- 961 (1085)
Q Consensus 941 ~~~l~~L~~L~i~~c~~l~~~----------------------------------------------------------- 961 (1085)
...+++|+.|++++|+-...+
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 235678888888877322111
Q ss_pred ----------CCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccccccccccccccceeecc
Q 037935 962 ----------LPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSK 1031 (1085)
Q Consensus 962 ----------~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~ 1031 (1085)
.|..+..+++|+.|++++| ++... .+..+..+++|+.|++++|. ++..++ .....+++
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~-ip~~l~~l~~L~~L~Ls~N~-l~g~ip---------~~l~~L~~ 681 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGY-IPKEIGSMPYLFILNLGHND-ISGSIP---------DEVGDLRG 681 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSC-CCGGGGGCTTCCEEECCSSC-CCSCCC---------GGGGGCTT
T ss_pred ccccceecccCchhhhccccccEEECcCC-ccccc-CCHHHhccccCCEEeCcCCc-cCCCCC---------hHHhCCCC
Confidence 1122344567888888775 45543 23456778888888888865 432222 12334788
Q ss_pred ccccccccccccceecCCCccccCCCcCceeeccCCCcccccCCCcC
Q 037935 1032 LSALSLFDLDSLTSFSSGNYAFKLPSLQDLWVIGCPKMKLFTKGELS 1078 (1085)
Q Consensus 1032 L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~lp~~~~~ 1078 (1085)
|+.|+++++.--..+|.. ..++++|++|++++|+---.+|.++..
T Consensus 682 L~~LdLs~N~l~g~ip~~--l~~l~~L~~L~ls~N~l~g~iP~~~~~ 726 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQA--MSALTMLTEIDLSNNNLSGPIPEMGQF 726 (768)
T ss_dssp CCEEECCSSCCEECCCGG--GGGCCCCSEEECCSSEEEEECCSSSSG
T ss_pred CCEEECCCCcccCcCChH--HhCCCCCCEEECcCCcccccCCCchhh
Confidence 999999987655567765 578899999999998766677776543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-33 Score=340.08 Aligned_cols=513 Identities=18% Similarity=0.155 Sum_probs=335.6
Q ss_pred ccccCCCccccccceEEEeeccCcccccc-c-CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-c
Q 037935 481 AVWEWPDGDALKKCYAISLLNSSIHEVSL-E-FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-P 557 (1085)
Q Consensus 481 ~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~-~-~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p 557 (1085)
.+...| ...+..+++|++++|.+..++. . ..+++|++|++++|. +..+.+..|.++++|++|+|++|.++.+ |
T Consensus 23 ~l~~iP-~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 23 GLNEIP-GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp CCSSCC-TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred CcccCc-CCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc---cceeChhhccCccccCeeeCCCCcccccCh
Confidence 344444 3456689999999999988853 3 388999999999987 6667667799999999999999999875 6
Q ss_pred hhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC
Q 037935 558 SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 558 ~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 637 (1085)
..++++++|++|++++| .++.+++..++++++|++|++++|.+... .+..+..+++|++|++++|.+.
T Consensus 99 ~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSI-----------KLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp TTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCC-----------CCCTTCCCTTCCEEECCSSCCC
T ss_pred hhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCccccc-----------CcccccCCcccCEEEcccCccc
Confidence 78999999999999999 89888655579999999999999988421 2233445899999999999888
Q ss_pred CCCCcc--cccccceeeEEecCCCcccccccccccccccccccceeehhhh----hhccccccccccccc--------CC
Q 037935 638 ILPDGL--FTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVM----ALELNAINVDEIWHY--------NQ 703 (1085)
Q Consensus 638 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~----~~~L~~l~L~~~~~~--------~~ 703 (1085)
.++... .+++|+.+.+.... +....+.........++.+.+..... ...+..+.+...+.. ..
T Consensus 167 ~~~~~~~~~l~~L~~l~L~l~~---n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i 243 (606)
T 3t6q_A 167 YLSKEDMSSLQQATNLSLNLNG---NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243 (606)
T ss_dssp EECHHHHHTTTTCCSEEEECTT---CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred ccChhhhhhhcccceeEEecCC---CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccccc
Confidence 775543 67778743332211 11122222333334555555443221 111221111111110 11
Q ss_pred CCCcccccc--cccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCC
Q 037935 704 LPAMVPCFQ--SLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLP 781 (1085)
Q Consensus 704 ~p~~~~~l~--~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~ 781 (1085)
.+..+..+. +|+.|++++|. +..++ ...++.+++|++|++++|. +..++.. ...+++|++|+++++.
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~lp~~--------l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKHY-FFNIS-SNTFHCFSGLQELDLTATH-LSELPSG--------LVGLSTLKKLVLSANK 312 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTCC-CSSCC-TTTTTTCTTCSEEECTTSC-CSCCCSS--------CCSCTTCCEEECTTCC
T ss_pred ChhHhchhhcCceeEEEeecCc-cCccC-HHHhccccCCCEEeccCCc-cCCCChh--------hcccccCCEEECccCC
Confidence 112222232 68888888864 44442 3457888888888888886 3333221 1247888888888753
Q ss_pred ccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeee--cccCCcC
Q 037935 782 ELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMIL--QDDFPQH 859 (1085)
Q Consensus 782 ~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~ 859 (1085)
+....+ .....+++|+.|.+.+|......+. ..+..+++|++|++++|.++... +..+..
T Consensus 313 -l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~---------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~- 374 (606)
T 3t6q_A 313 -FENLCQ-ISASNFPSLTHLSIKGNTKRLELGT---------------GCLENLENLRELDLSHDDIETSDCCNLQLRN- 374 (606)
T ss_dssp -CSBGGG-GCGGGCTTCSEEECCSCSSCCBCCS---------------STTTTCTTCCEEECCSSCCCEEEESTTTTTT-
T ss_pred -cCcCch-hhhhccCcCCEEECCCCCcccccch---------------hhhhccCcCCEEECCCCccccccCcchhccc-
Confidence 333222 1245678888888888754433221 11345788888888888877765 334444
Q ss_pred ccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCch
Q 037935 860 LFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKE 939 (1085)
Q Consensus 860 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~ 939 (1085)
+++|++|++++|.++.+++..+..+++|+.|++++|.+....+ ...+..+++|+.|++++| .++......+
T Consensus 375 -l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-- 445 (606)
T 3t6q_A 375 -LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA-----QSPFQNLHLLKVLNLSHS-LLDISSEQLF-- 445 (606)
T ss_dssp -CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT-----CCTTTTCTTCCEEECTTC-CCBTTCTTTT--
T ss_pred -CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc-----chhhhCcccCCEEECCCC-ccCCcCHHHH--
Confidence 7888888888888888877778888888888888888665422 123556788888888884 4444433222
Q ss_pred hhhHhhhhceeeeeccccccc---cCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccccc
Q 037935 940 LDFIFQHLQILRVLHCQNLLS---LLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISD 1016 (1085)
Q Consensus 940 ~~~~l~~L~~L~i~~c~~l~~---~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~ 1016 (1085)
..+++|+.|++++|. +.. ..+..+..+++|++|++++| ++..+ .+..+..+++|++|++++|. ++...+.
T Consensus 446 --~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~- 518 (606)
T 3t6q_A 446 --DGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSI-DQHAFTSLKMMNHVDLSHNR-LTSSSIE- 518 (606)
T ss_dssp --TTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSSC-CCGGGGG-
T ss_pred --hCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCC-ccCcc-ChhhhccccCCCEEECCCCc-cCcCChh-
Confidence 247888888888884 332 12345777888888888886 46655 34556778888888888864 5444321
Q ss_pred cccccccccceeeccccccccccccccceecCCCccccCCCcCceeeccCCC
Q 037935 1017 EDETANLKEEIVFSKLSALSLFDLDSLTSFSSGNYAFKLPSLQDLWVIGCPK 1068 (1085)
Q Consensus 1017 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 1068 (1085)
....+++| .|+++++. ++.++... ...+++|++|++++||-
T Consensus 519 --------~l~~l~~L-~L~L~~N~-l~~~~~~~-~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 519 --------ALSHLKGI-YLNLASNH-ISIILPSL-LPILSQQRTINLRQNPL 559 (606)
T ss_dssp --------GGTTCCSC-EEECCSSC-CCCCCGGG-HHHHHTSSEEECTTCCE
T ss_pred --------HhCccccc-EEECcCCc-ccccCHhh-cccCCCCCEEeCCCCCc
Confidence 11225667 77877763 55555443 35678888888888764
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-32 Score=333.72 Aligned_cols=492 Identities=16% Similarity=0.122 Sum_probs=353.4
Q ss_pred ceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccccEEecc
Q 037935 494 CYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDLT 572 (1085)
Q Consensus 494 ~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls 572 (1085)
-+.++.+++.++.+|..+. +++++|++++|. +..++...|.++++|++|++++|.++.+ |..|+++++|++|+|+
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNP---LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCC---cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 3568888889999998664 899999999998 6788887899999999999999999987 5689999999999999
Q ss_pred CcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCC--CCCcc-cccccc
Q 037935 573 DCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSI--LPDGL-FTKKLE 649 (1085)
Q Consensus 573 ~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~--~~~~~-~l~~L~ 649 (1085)
+| .++.+++..|+++++|++|++++|.+... .+..++++++|++|++++|.+.. +|..+ .+++|+
T Consensus 89 ~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 89 GN-PIQSFSPGSFSGLTSLENLVAVETKLASL-----------ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp TC-CCCCCCTTSSTTCTTCCEEECTTSCCCCS-----------SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred CC-cccccChhhcCCcccCCEEEccCCccccc-----------cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 99 89998666679999999999999998422 22448899999999999999874 56666 789999
Q ss_pred eeeEEecCCCcccccccccccccccccccceeehhhhhhccc----ccccccccccCCCCCcccccccccEEEEcCCCCC
Q 037935 650 RFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELN----AINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKL 725 (1085)
Q Consensus 650 ~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~----~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l 725 (1085)
.|+++.+. +.......+..+..|+ .+++..+......+..+.. .+|+.|++++|...
T Consensus 157 ~L~Ls~n~------------------l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 157 HVDLSYNY------------------IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNS 217 (606)
T ss_dssp EEECCSSC------------------CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSC
T ss_pred EEEccCCc------------------ceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccc
Confidence 99986432 1111122223333332 4555555444333333433 38999999988654
Q ss_pred ccccchhhHhhcccccEEEeccccchH--HHh---------------------cc-CCcccccccccCCcccEEecCCCC
Q 037935 726 KYIFSASTIQSLEQLQHLEIRLCKSLQ--EII---------------------SE-NRTDQVTAYFVFPRVTTLKLDGLP 781 (1085)
Q Consensus 726 ~~l~~~~~l~~l~~L~~L~l~~~~~l~--~i~---------------------~~-~~~~~~~~~~~~~~L~~L~l~~~~ 781 (1085)
... .+..++.+++|+.+.+.....-. .+. .. ...+.......+++|+.|+++++.
T Consensus 218 ~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 296 (606)
T 3vq2_A 218 SNI-MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296 (606)
T ss_dssp HHH-HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC
T ss_pred hhH-HHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCcc
Confidence 333 24567888888887764221000 000 00 000011113356788888888754
Q ss_pred ccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCcc
Q 037935 782 ELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLF 861 (1085)
Q Consensus 782 ~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 861 (1085)
+..+. ....+++|++|.+.+|.. ..+| .+ .+++|++|++++|...... .+. .+
T Consensus 297 -~~~l~---~l~~~~~L~~L~l~~n~l-~~lp----------------~~--~l~~L~~L~l~~n~~~~~~--~~~--~l 349 (606)
T 3vq2_A 297 -IKYLE---DVPKHFKWQSLSIIRCQL-KQFP----------------TL--DLPFLKSLTLTMNKGSISF--KKV--AL 349 (606)
T ss_dssp -CCCCC---CCCTTCCCSEEEEESCCC-SSCC----------------CC--CCSSCCEEEEESCSSCEEC--CCC--CC
T ss_pred -chhhh---hccccccCCEEEcccccC-cccc----------------cC--CCCccceeeccCCcCccch--hhc--cC
Confidence 33332 245577889999988865 4443 11 4899999999999633322 233 38
Q ss_pred CCceEEEecCCcccccc--hhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCccccccccc-CCCc
Q 037935 862 GSLKQLRVGDDDLACFP--LDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWK-HDSK 938 (1085)
Q Consensus 862 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~-~~~~ 938 (1085)
++|++|++++|.++..+ +..+..+++|+.|++++|.+..++ ..+..+++|+.|+++++ .+..+.. ..+
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~- 420 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-------ANFMGLEELQHLDFQHS-TLKRVTEFSAF- 420 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-------CCCTTCTTCCEEECTTS-EEESTTTTTTT-
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-------hhccCCCCCCeeECCCC-ccCCccChhhh-
Confidence 99999999999998874 466789999999999999987764 34566889999999995 4444432 222
Q ss_pred hhhhHhhhhceeeeeccccccccCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccccccc
Q 037935 939 ELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDED 1018 (1085)
Q Consensus 939 ~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 1018 (1085)
..+++|+.|++++| .+....|..+..+++|++|++++|. +.....+..+..+++|++|++++|. ++.++..
T Consensus 421 ---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~--- 491 (606)
T 3vq2_A 421 ---LSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWG--- 491 (606)
T ss_dssp ---TTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTT---
T ss_pred ---hccccCCEEECcCC-CCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCc-CCccChh---
Confidence 25799999999999 5666677778999999999999864 5542234557889999999999985 5555331
Q ss_pred cccccccceeeccccccccccccccceecCCCccccCCCcCceeeccCCCcccccCC
Q 037935 1019 ETANLKEEIVFSKLSALSLFDLDSLTSFSSGNYAFKLPSLQDLWVIGCPKMKLFTKG 1075 (1085)
Q Consensus 1019 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~lp~~ 1075 (1085)
....+++|+.|++++|+ ++.+.... ...+++|++|++++| ++..+|.+
T Consensus 492 ------~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~p~~ 539 (606)
T 3vq2_A 492 ------VFDTLHRLQLLNMSHNN-LLFLDSSH-YNQLYSLSTLDCSFN-RIETSKGI 539 (606)
T ss_dssp ------TTTTCTTCCEEECCSSC-CSCEEGGG-TTTCTTCCEEECTTS-CCCCEESC
T ss_pred ------hhcccccCCEEECCCCc-CCCcCHHH-ccCCCcCCEEECCCC-cCcccCHh
Confidence 12237999999999985 55553322 467899999999998 48899986
No 7
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.3e-33 Score=332.92 Aligned_cols=261 Identities=16% Similarity=0.162 Sum_probs=207.4
Q ss_pred ccchHHHHHHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCE-EEEEEeCCCcCHHHHHHHHHHHhCC-
Q 037935 163 FESRVSTLKSIQNALTD-VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDR-VVFSEVSQTPDIKKIQGEIAEKLGL- 239 (1085)
Q Consensus 163 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~- 239 (1085)
.+||+.++++|.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+++.++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 49999999999999874 56899999999999999999999998777778986 9999999999998888888775421
Q ss_pred --C----CCC---c-hHH-HHHHHHHHHH--HcCCcEEEEEeCCCCcccccccccccCCCCCCcEEEe------------
Q 037935 240 --E----LSD---E-AEY-RRASRLYERL--KNENKILVILDNIWKYLDLDTIGIPFGNDHEGYNFLI------------ 294 (1085)
Q Consensus 240 --~----~~~---~-~~~-~~~~~~~~~l--~~~~~~LlvlDdv~~~~~~~~~~~~~~~~~~gs~ilv------------ 294 (1085)
. ... . ... .....+.+.+ ..++|+||||||||+.+.|+.+ + .||+|||
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~---pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N---LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H---SSCCEEEECSCSHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----C---CCeEEEEeccChHHHHhcC
Confidence 1 110 0 111 1223333333 1489999999999998888764 2 6888888
Q ss_pred -------c------CCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHHHHhcC--CHHHHHHHHHHh
Q 037935 295 -------G------NLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVARALRNK--SLHEWKNALREL 359 (1085)
Q Consensus 295 -------~------~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~--~~~~w~~~~~~l 359 (1085)
+ +|+.+|||+||..+.+.. ..++..+| |+|+||||+++|+.|+++ +..+|+..
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----
Confidence 3 899999999999986432 23334444 999999999999999966 78888752
Q ss_pred cCCCCCCCCCCcccchhhHHHHHhcCChHHH-HHHHHhccccCCC--CCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH
Q 037935 360 QTPSVVNFEGVPAETYSSIELSFKYLKGEQL-KKIFLLCSLIGNS--FYLIDLLRYSMGLGLFHGVNKMEDARNKLYALV 436 (1085)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cf~~~s~fp~~--i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~ 436 (1085)
....+..++.+||+.||+ +. |.||+|||+||++ |+.+.++.+|+++|. ++ ..+++
T Consensus 351 ----------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------ed----Ae~~L 408 (1221)
T 1vt4_I 351 ----------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------SD----VMVVV 408 (1221)
T ss_dssp ----------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------HH----HHHHH
T ss_pred ----------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------HH----HHHHH
Confidence 135789999999999998 67 9999999999986 888999999999871 12 33468
Q ss_pred HHHhHcccceecCCcceEEEcHHHHHHH
Q 037935 437 HELRDCCLLLEGDRNETFYMHDVVCDVA 464 (1085)
Q Consensus 437 ~~L~~~~ll~~~~~~~~~~mHdl~~~~~ 464 (1085)
++|+++||++..+...+|+|||++++++
T Consensus 409 ~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999999999865677899999999965
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-32 Score=333.97 Aligned_cols=488 Identities=17% Similarity=0.146 Sum_probs=341.4
Q ss_pred ccccceEEEeeccCccccc-cc-CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccc
Q 037935 490 ALKKCYAISLLNSSIHEVS-LE-FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKL 566 (1085)
Q Consensus 490 ~~~~~r~Lsl~~~~~~~l~-~~-~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L 566 (1085)
...++++|++++|.+..+. .. ..+++|++|++++|. ...+++..|.++++|++|++++|.++.+ |..++++++|
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP---LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCc---ccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 4568999999999998774 33 389999999999997 6677667799999999999999999997 5789999999
Q ss_pred cEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCc--EEEEEeccCCCCCCcc-
Q 037935 567 RMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLT--TLEIDVEDDSILPDGL- 643 (1085)
Q Consensus 567 ~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~--~L~l~~~~~~~~~~~~- 643 (1085)
++|++++| .+..++...+..+++|++|++++|.+ ....+..+..+++|+ .|++++|.+..++...
T Consensus 132 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-----------~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 132 ESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAI-----------HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp CEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCC-----------CEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred cEEECCCC-cccccCcccccCCcccCEEEcccCcc-----------cccChhhhhhhcccceeEEecCCCccCccChhHh
Confidence 99999999 88887432246699999999999998 344567789999999 8888899988777655
Q ss_pred cccccceeeEEecCCCccccccccc------ccccccccccceee--hhhhhh--cccccccccccccCCCCCccccccc
Q 037935 644 FTKKLERFDISIGDGSFDSTKIIGN------DWFQTFNIQSIYIF--CIVMAL--ELNAINVDEIWHYNQLPAMVPCFQS 713 (1085)
Q Consensus 644 ~l~~L~~L~l~~~~~~~~~~~~l~~------~~~~~~~l~~~~l~--~~~~~~--~L~~l~L~~~~~~~~~p~~~~~l~~ 713 (1085)
...+|+.|++..+.........+.. .+....++....+. .+..+. .|+.+++..+......|..+..+++
T Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 279 (606)
T 3t6q_A 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279 (606)
T ss_dssp TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTT
T ss_pred hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccC
Confidence 6678888887544210000000000 00000011111111 111111 4566777776666666677888999
Q ss_pred ccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCccc
Q 037935 714 LTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTS 793 (1085)
Q Consensus 714 L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 793 (1085)
|++|++++|. +..+|+ .+..+++|++|++++|. +..+... ....+++|++|+++++......... ...
T Consensus 280 L~~L~l~~n~-l~~lp~--~l~~l~~L~~L~l~~n~-l~~~~~~-------~~~~l~~L~~L~l~~n~~~~~~~~~-~~~ 347 (606)
T 3t6q_A 280 LQELDLTATH-LSELPS--GLVGLSTLKKLVLSANK-FENLCQI-------SASNFPSLTHLSIKGNTKRLELGTG-CLE 347 (606)
T ss_dssp CSEEECTTSC-CSCCCS--SCCSCTTCCEEECTTCC-CSBGGGG-------CGGGCTTCSEEECCSCSSCCBCCSS-TTT
T ss_pred CCEEeccCCc-cCCCCh--hhcccccCCEEECccCC-cCcCchh-------hhhccCcCCEEECCCCCcccccchh-hhh
Confidence 9999999874 456543 47889999999999887 3222111 1235889999999987543333222 245
Q ss_pred CCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCc
Q 037935 794 EWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDD 873 (1085)
Q Consensus 794 ~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 873 (1085)
.+++|++|++.+|....... ....+..+++|++|++++|.+....+..+.. +++|++|++++|.
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~--------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDC--------------CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE--CPQLELLDLAFTR 411 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEE--------------STTTTTTCTTCCEEECCSCSCEEECTTTTTT--CTTCSEEECTTCC
T ss_pred ccCcCCEEECCCCccccccC--------------cchhcccCCCCCEEECCCCcCCcCCHHHhcC--CccCCeEECCCCc
Confidence 67889999988875433210 0012345789999999999988887776665 7899999999888
Q ss_pred ccccc-hhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhhceeee
Q 037935 874 LACFP-LDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRV 952 (1085)
Q Consensus 874 l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i 952 (1085)
++... ...+..+++|+.|++++|.+.... +..+..+++|+.|+++++ .++....... .....+++|+.|++
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISS------EQLFDGLPALQHLNLQGN-HFPKGNIQKT-NSLQTLGRLEILVL 483 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTC------TTTTTTCTTCCEEECTTC-BCGGGEECSS-CGGGGCTTCCEEEC
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcC------HHHHhCCCCCCEEECCCC-CCCccccccc-hhhccCCCccEEEC
Confidence 87654 344778899999999999876543 234566888999999885 3433111000 01235788999999
Q ss_pred eccccccccCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccccccccccccccceeeccc
Q 037935 953 LHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSKL 1032 (1085)
Q Consensus 953 ~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L 1032 (1085)
++| .+..+.|..+..+++|++|++++| ++... .+..+..+++| .|++++|. ++.+++. ....+++|
T Consensus 484 s~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~l~~l~~L-~L~L~~N~-l~~~~~~---------~~~~l~~L 549 (606)
T 3t6q_A 484 SFC-DLSSIDQHAFTSLKMMNHVDLSHN-RLTSS-SIEALSHLKGI-YLNLASNH-ISIILPS---------LLPILSQQ 549 (606)
T ss_dssp TTS-CCCEECTTTTTTCTTCCEEECCSS-CCCGG-GGGGGTTCCSC-EEECCSSC-CCCCCGG---------GHHHHHTS
T ss_pred CCC-ccCccChhhhccccCCCEEECCCC-ccCcC-ChhHhCccccc-EEECcCCc-ccccCHh---------hcccCCCC
Confidence 988 677777778888999999999885 46665 34567788888 99999864 5554331 12236888
Q ss_pred cccccccccc
Q 037935 1033 SALSLFDLDS 1042 (1085)
Q Consensus 1033 ~~L~l~~c~~ 1042 (1085)
+.|+++++|-
T Consensus 550 ~~L~l~~N~~ 559 (606)
T 3t6q_A 550 RTINLRQNPL 559 (606)
T ss_dssp SEEECTTCCE
T ss_pred CEEeCCCCCc
Confidence 8888888764
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.5e-33 Score=343.70 Aligned_cols=508 Identities=15% Similarity=0.084 Sum_probs=266.0
Q ss_pred cccceEEEeeccCcccccc-----cCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhcccc
Q 037935 491 LKKCYAISLLNSSIHEVSL-----EFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTK 565 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~~~~l~~-----~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~ 565 (1085)
..++++|++++|.+..... ...+++|++|++.+|. .....+ +.++++|++|++++|.+...++.++++++
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 224 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK---ISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSA 224 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE---EESCCB--CTTCTTCCEEECCSSCCCSCCCBCTTCCS
T ss_pred CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc---ccccCC--cccCCcCCEEECcCCcCCCCCcccccCCC
Confidence 4466777777766654432 2256667777766665 222222 35566666777766666653333666666
Q ss_pred ccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC-CCCCcc-
Q 037935 566 LRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS-ILPDGL- 643 (1085)
Q Consensus 566 L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~~~~~~- 643 (1085)
|++|++++| .++...+..++++++|++|++++|.+... .+. ..+++|++|++++|.+. .+|..+
T Consensus 225 L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------~~~--~~l~~L~~L~L~~n~l~~~ip~~~~ 290 (768)
T 3rgz_A 225 LQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGP-----------IPP--LPLKSLQYLSLAENKFTGEIPDFLS 290 (768)
T ss_dssp CCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCCEES-----------CCC--CCCTTCCEEECCSSEEEESCCCCSC
T ss_pred CCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCcccCc-----------cCc--cccCCCCEEECcCCccCCccCHHHH
Confidence 777777666 55533333346666666666666665311 111 14556666666665554 444443
Q ss_pred c-ccccceeeEEecCCCcccccccccccccccccccceee-----------hhhhhhcccccccccccccCCCCCccccc
Q 037935 644 F-TKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIF-----------CIVMALELNAINVDEIWHYNQLPAMVPCF 711 (1085)
Q Consensus 644 ~-l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~-----------~~~~~~~L~~l~L~~~~~~~~~p~~~~~l 711 (1085)
. +++|+.|+++.+.-. ..+...+....+++.+.+. .+..+..|+.+++..+...+.+|.++..+
T Consensus 291 ~~~~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 366 (768)
T 3rgz_A 291 GACDTLTGLDLSGNHFY----GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366 (768)
T ss_dssp TTCTTCSEEECCSSEEE----ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH
T ss_pred hhcCcCCEEECcCCcCC----CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh
Confidence 2 255666655432100 0000011111111111111 12222334444444444444445544444
Q ss_pred c-cccEEEEcCCCCCccccchhhHhh--cccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccC
Q 037935 712 Q-SLTRLIVWGCDKLKYIFSASTIQS--LEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYP 788 (1085)
Q Consensus 712 ~-~L~~L~L~~~~~l~~l~~~~~l~~--l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 788 (1085)
+ +|+.|++++|.....+++. +.. +++|++|++++|.....++. ....+++|+.|+++++. +....+
T Consensus 367 ~~~L~~L~Ls~N~l~~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~p~--------~l~~l~~L~~L~Ls~N~-l~~~~p 435 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGPILPN--LCQNPKNTLQELYLQNNGFTGKIPP--------TLSNCSELVSLHLSFNY-LSGTIP 435 (768)
T ss_dssp TTTCSEEECCSSEEEEECCTT--TTCSTTCCCCEEECCSSEEEEECCG--------GGGGCTTCCEEECCSSE-EESCCC
T ss_pred hcCCcEEEccCCCcCCCcChh--hhhcccCCccEEECCCCccccccCH--------HHhcCCCCCEEECcCCc-ccCccc
Confidence 4 5555555554333322221 222 44555555555442111111 11134555555555532 211111
Q ss_pred CCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEE
Q 037935 789 GMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLR 868 (1085)
Q Consensus 789 ~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 868 (1085)
. ....+++|+.|.+.+|......| ..+..+++|++|++++|.+++..+..+.. +++|++|+
T Consensus 436 ~-~l~~l~~L~~L~L~~n~l~~~~p----------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--l~~L~~L~ 496 (768)
T 3rgz_A 436 S-SLGSLSKLRDLKLWLNMLEGEIP----------------QELMYVKTLETLILDFNDLTGEIPSGLSN--CTNLNWIS 496 (768)
T ss_dssp G-GGGGCTTCCEEECCSSCCCSCCC----------------GGGGGCTTCCEEECCSSCCCSCCCGGGGG--CTTCCEEE
T ss_pred H-HHhcCCCCCEEECCCCcccCcCC----------------HHHcCCCCceEEEecCCcccCcCCHHHhc--CCCCCEEE
Confidence 1 12334555555555554322222 12234555666666666555444444433 45566666
Q ss_pred ecCCcccccchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCC-----------
Q 037935 869 VGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDS----------- 937 (1085)
Q Consensus 869 l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~----------- 937 (1085)
+++|.++...+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++++-...+|....
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p------~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~ 570 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP------AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC------GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC------HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc
Confidence 66555554333445555666666666665544322 2344455555555555332212211000
Q ss_pred ------------------------------------------------------chhhhHhhhhceeeeeccccccccCC
Q 037935 938 ------------------------------------------------------KELDFIFQHLQILRVLHCQNLLSLLP 963 (1085)
Q Consensus 938 ------------------------------------------------------~~~~~~l~~L~~L~i~~c~~l~~~~~ 963 (1085)
......+++|+.|++++| ++....|
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip 649 (768)
T 3rgz_A 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIP 649 (768)
T ss_dssp CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCC
T ss_pred ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccCC
Confidence 000113578999999998 6777778
Q ss_pred CCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccccccccccccccceeecccccccccccccc
Q 037935 964 SSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSKLSALSLFDLDSL 1043 (1085)
Q Consensus 964 ~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 1043 (1085)
..+..+++|+.|++++|. ++.. .+..+..+++|+.|++++|. ++..++ .....+++|+.|++++++--
T Consensus 650 ~~l~~l~~L~~L~Ls~N~-l~g~-ip~~l~~L~~L~~LdLs~N~-l~g~ip---------~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHND-ISGS-IPDEVGDLRGLNILDLSSNK-LDGRIP---------QAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp GGGGGCTTCCEEECCSSC-CCSC-CCGGGGGCTTCCEEECCSSC-CEECCC---------GGGGGCCCCSEEECCSSEEE
T ss_pred HHHhccccCCEEeCcCCc-cCCC-CChHHhCCCCCCEEECCCCc-ccCcCC---------hHHhCCCCCCEEECcCCccc
Confidence 889999999999999854 6644 24567889999999999976 443322 12234789999999998767
Q ss_pred ceecCCCccccCCCcCceeeccCCCccccc
Q 037935 1044 TSFSSGNYAFKLPSLQDLWVIGCPKMKLFT 1073 (1085)
Q Consensus 1044 ~~l~~~~~~~~l~~L~~L~i~~C~~l~~lp 1073 (1085)
..+|.+. .+.++....+.|||.|.-.|
T Consensus 718 g~iP~~~---~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 718 GPIPEMG---QFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp EECCSSS---SGGGSCGGGGCSCTEEESTT
T ss_pred ccCCCch---hhccCCHHHhcCCchhcCCC
Confidence 7888763 45667777788998887644
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-31 Score=325.71 Aligned_cols=519 Identities=16% Similarity=0.126 Sum_probs=340.0
Q ss_pred eEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccccEEeccC
Q 037935 495 YAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDLTD 573 (1085)
Q Consensus 495 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~ 573 (1085)
+.++.+++.+..+|..+. +++++|++++|. +..++...|.++++|++|+|++|.++.+ |..++++++|++|++++
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQ---LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSC---CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCC---CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 457788888899987664 899999999997 7788888899999999999999999986 67899999999999999
Q ss_pred cccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc--ccccccee
Q 037935 574 CLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL--FTKKLERF 651 (1085)
Q Consensus 574 ~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~l~~L~~L 651 (1085)
| .++.+|+..|+++++|++|++++|.+. ...+..++++++|++|++++|.+...+... .+++|+.|
T Consensus 83 n-~l~~l~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 83 N-ELSQLSDKTFAFCTNLTELHLMSNSIQ-----------KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSCCC-----------CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred C-ccCccChhhhccCCCCCEEECCCCccC-----------ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 9 999999977899999999999999884 223345889999999999999988776543 78899999
Q ss_pred eEEecCCCcccccccccccccccccccceeehhh--hhhcccccccccccccCCCCCccccc------------------
Q 037935 652 DISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIV--MALELNAINVDEIWHYNQLPAMVPCF------------------ 711 (1085)
Q Consensus 652 ~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~--~~~~L~~l~L~~~~~~~~~p~~~~~l------------------ 711 (1085)
++..+.-. ......+. ....|+.+++..+......|.++..+
T Consensus 151 ~L~~n~l~------------------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 212 (680)
T 1ziw_A 151 LLSNNKIQ------------------ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212 (680)
T ss_dssp ECCSSCCC------------------CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH
T ss_pred EccCCccc------------------ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH
Confidence 88654210 00000000 11234444444443333333333333
Q ss_pred ---------ccccEEEEcCCCCCccccchhhHhhccc--ccEEEeccccchHHHhccCCcccccccccCCcccEEecCCC
Q 037935 712 ---------QSLTRLIVWGCDKLKYIFSASTIQSLEQ--LQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGL 780 (1085)
Q Consensus 712 ---------~~L~~L~L~~~~~l~~l~~~~~l~~l~~--L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~ 780 (1085)
++|+.|++++|.... .+ +..+..++. |+.|++++|. +..+... ....+++|++|+++++
T Consensus 213 ~~~~~~l~~~~L~~L~L~~n~l~~-~~-~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~~L~L~~n 282 (680)
T 1ziw_A 213 EKLCLELANTSIRNLSLSNSQLST-TS-NTTFLGLKWTNLTMLDLSYNN-LNVVGND-------SFAWLPQLEYFFLEYN 282 (680)
T ss_dssp HHHHHHHTTSCCCEEECTTSCCCE-EC-TTTTGGGGGSCCCEEECTTSC-CCEECTT-------TTTTCTTCCEEECCSC
T ss_pred HHHHHHhhhccccEEEccCCcccc-cC-hhHhhccCcCCCCEEECCCCC-cCccCcc-------cccCcccccEeeCCCC
Confidence 456677776654333 22 234556544 8888888876 2222111 1224788888888875
Q ss_pred CccccccCCCcccCCCcccceeeccCCCcc-----cccC-----------CCCCCCCCCCCCC-cccccccCCccceeee
Q 037935 781 PELRCLYPGMHTSEWPALKNLVACNCDKIT-----LSQN-----------DENDQFGVPAQQP-LFSFKKILPNLEGLAL 843 (1085)
Q Consensus 781 ~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~-----~~~~-----------~~~~~~~~~~~~~-l~~~~~~l~~L~~L~l 843 (1085)
. +....+. ....+++|+.|.+.++..-. .+|. ........+.... ....+..+++|++|++
T Consensus 283 ~-l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 283 N-IQHLFSH-SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp C-BSEECTT-TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred c-cCccChh-hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 3 3333222 13457788888877542111 0010 0000000000000 0112234555666666
Q ss_pred ccCC--ceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCcccccccccccccee
Q 037935 844 SGKD--ITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRL 921 (1085)
Q Consensus 844 s~n~--l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L 921 (1085)
++|. +..+....|.....++|+.|++++|+++.+++..+..+++|+.|++++|.+....+ ...+..+++|+.|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~~l~~L~~L 435 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT-----GQEWRGLENIFEI 435 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC-----SGGGTTCTTCCEE
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC-----cccccCcccccEE
Confidence 5554 22332222322112467777777777777777777788888888888888765432 2345667888999
Q ss_pred ccCCcccccccccCCCchhhhHhhhhceeeeecccccc--ccCCCCcccccCccEEEeccccCcccccchhhhhhccccc
Q 037935 922 NLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLL--SLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLV 999 (1085)
Q Consensus 922 ~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~--~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~ 999 (1085)
+++++ .+..+....+. .+++|+.|++.+|. +. ...|..+..+++|+.|++++| +++.+ ++..+..+++|+
T Consensus 436 ~Ls~n-~l~~~~~~~~~----~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~ 507 (680)
T 1ziw_A 436 YLSYN-KYLQLTRNSFA----LVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNN-NIANI-NDDMLEGLEKLE 507 (680)
T ss_dssp ECCSC-SEEECCTTTTT----TCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCC
T ss_pred ecCCC-CcceeChhhhh----cCcccccchhcccc-ccccccCCcccccCCCCCEEECCCC-CCCcC-ChhhhccccccC
Confidence 99884 45555443332 57899999998874 32 345667889999999999885 57766 445678899999
Q ss_pred EEEEcCCcccccccccccccccccccceeeccccccccccccccceecCCCccccCCCcCceeeccCCCcccccCCCc
Q 037935 1000 SLRIFGCPAMTEVIISDEDETANLKEEIVFSKLSALSLFDLDSLTSFSSGNYAFKLPSLQDLWVIGCPKMKLFTKGEL 1077 (1085)
Q Consensus 1000 ~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~lp~~~~ 1077 (1085)
+|++++|. ++.++.....+ +.......+++|+.|+++++ .++.+|.+.+ .++++|++|+++++ ++..+|.+.+
T Consensus 508 ~L~Ls~N~-l~~~~~~~~~~-~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~ 580 (680)
T 1ziw_A 508 ILDLQHNN-LARLWKHANPG-GPIYFLKGLSHLHILNLESN-GFDEIPVEVF-KDLFELKIIDLGLN-NLNTLPASVF 580 (680)
T ss_dssp EEECCSSC-CGGGGSTTSTT-SCCCTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred EEeCCCCC-ccccchhhccC-CcchhhcCCCCCCEEECCCC-CCCCCCHHHc-ccccCcceeECCCC-CCCcCCHhHh
Confidence 99999965 66553211000 00001223789999999986 6788887654 68999999999874 8889988754
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.5e-32 Score=360.03 Aligned_cols=291 Identities=18% Similarity=0.268 Sum_probs=226.2
Q ss_pred CCCCccccchHHHHHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhh-cc-CCCEEEEEEeCCCcC--HHHHH
Q 037935 157 NKGYEAFESRVSTLKSIQNALT--DVNVSIIGVYGMGGIGKTTLVKEFARQARE-KK-LFDRVVFSEVSQTPD--IKKIQ 230 (1085)
Q Consensus 157 ~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~-~f~~~~wv~~~~~~~--~~~~~ 230 (1085)
+..+..|+||+.++++|.++|. +++.++|+|+||||+||||||+++|++.+. .. .|+.++||++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 4456679999999999999985 467899999999999999999999987643 33 447789999988543 45557
Q ss_pred HHHHHHhCCCCC-----CchHHHHHHHHHHHHHcCC--cEEEEEeCCCCcccccccccccCCCCCCcEEEe---------
Q 037935 231 GEIAEKLGLELS-----DEAEYRRASRLYERLKNEN--KILVILDNIWKYLDLDTIGIPFGNDHEGYNFLI--------- 294 (1085)
Q Consensus 231 ~~i~~~l~~~~~-----~~~~~~~~~~~~~~l~~~~--~~LlvlDdv~~~~~~~~~~~~~~~~~~gs~ilv--------- 294 (1085)
..++..++.... ..........+...+ .++ ||||||||||+..+|+.+ .+|++|||
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM-LRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT-SSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHH-hccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 778887765432 122233333444444 355 999999999998877665 46788888
Q ss_pred -----------c-CCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHHHHhcCCHHHHHHHHHHhcCC
Q 037935 295 -----------G-NLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRELQTP 362 (1085)
Q Consensus 295 -----------~-~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~ 362 (1085)
. +|+++|||+||..+++. ..+...+.+++|+++|+|+||||+++|++|+.+. ..|...++.+...
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNK 348 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSC
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhh
Confidence 3 49999999999998853 2345677899999999999999999999999665 4799988888655
Q ss_pred CCCCCC----CCcccchhhHHHHHhcCChHHHHHHHHhccccCCC--CCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH
Q 037935 363 SVVNFE----GVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNS--FYLIDLLRYSMGLGLFHGVNKMEDARNKLYALV 436 (1085)
Q Consensus 363 ~~~~~~----~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~--i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~ 436 (1085)
...... .....+..++.+||+.||+ ++|.||+|||+||++ |+.+.++.+|.+++ +...+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l 415 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDIL 415 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHH
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHH
Confidence 532211 1124689999999999997 799999999999997 89999999996641 2234568
Q ss_pred HHHhHcccceecC--CcceEEEcHHHHHHHHHHhhcc
Q 037935 437 HELRDCCLLLEGD--RNETFYMHDVVCDVAVSIACRD 471 (1085)
Q Consensus 437 ~~L~~~~ll~~~~--~~~~~~mHdl~~~~~~~~~~~e 471 (1085)
++|+++||++... ...+|+||+++|++++..+.++
T Consensus 416 ~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 416 QEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999998653 3347999999999999997765
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=5.9e-31 Score=329.67 Aligned_cols=164 Identities=21% Similarity=0.268 Sum_probs=118.5
Q ss_pred EecCccccCCCccccccceEEEeeccCcccccc-c-CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCccc
Q 037935 477 VRNDAVWEWPDGDALKKCYAISLLNSSIHEVSL-E-FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLF 554 (1085)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~-~-~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~ 554 (1085)
.....+...|. .+.++++|++++|.+..+.. . ..+++|++|++++|.. ...+++..|.++++|++|+|++|.+.
T Consensus 11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred ccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCCcCc
Confidence 34445555555 67788888888888877643 2 3788888888888854 56676667888888888888888888
Q ss_pred CC-chhhhccccccEEeccCcccccc-cch-hhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEE
Q 037935 555 SL-PSSIGQLTKLRMLDLTDCLQLKF-IVP-NILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEI 631 (1085)
Q Consensus 555 ~l-p~~i~~L~~L~~L~Ls~~~~l~~-lp~-~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 631 (1085)
.+ |..|+++++|++|+|++| .+.. +|. ..++++++|++|++++|.+... .....++++++|++|++
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~----------~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSL----------YLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCC----------CCCGGGGTCSSCCEEEE
T ss_pred ccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCccccc----------ccchhHhhCCCCCEEEC
Confidence 75 778888888888888888 7765 333 2358888888888888887321 12245788888888888
Q ss_pred EeccCCCCCCc-c-cc--cccceeeEEe
Q 037935 632 DVEDDSILPDG-L-FT--KKLERFDISI 655 (1085)
Q Consensus 632 ~~~~~~~~~~~-~-~l--~~L~~L~l~~ 655 (1085)
++|.+..+... + .+ ++|+.|++..
T Consensus 156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 156 SSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp ESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CCCcCCeeCHHHcccccCCccceEECCC
Confidence 88887665433 2 33 6677776643
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.9e-30 Score=310.10 Aligned_cols=474 Identities=16% Similarity=0.167 Sum_probs=318.1
Q ss_pred ccccCCCccccccceEEEeeccCcccccc--cCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-
Q 037935 481 AVWEWPDGDALKKCYAISLLNSSIHEVSL--EFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP- 557 (1085)
Q Consensus 481 ~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp- 557 (1085)
.+...|. ..+..+++|++++|.+..++. ...+++|++|++++|. +..+++..|.++++|++|+|++|.++.+|
T Consensus 18 ~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp CCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc---CCccCcccccCchhCCEEeCcCCcCCccCH
Confidence 4444443 456678899999988887764 2478889999998886 66777777888999999999999888865
Q ss_pred hhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC
Q 037935 558 SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 558 ~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 637 (1085)
..|+++++|++|++++| .++.+|...++++++|++|++++|.+.. ...+..++++++|++|++++|.+.
T Consensus 94 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~----------~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS----------FKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCC----------CCCCGGGGGCTTCCEEECTTSCCC
T ss_pred hhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccce----------ecChhhhcccCCCCEEeCcCCccc
Confidence 67888999999999998 8888877556889999999999888731 124566888889999999888877
Q ss_pred CCCCc-c-ccccc----ceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCccccc
Q 037935 638 ILPDG-L-FTKKL----ERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCF 711 (1085)
Q Consensus 638 ~~~~~-~-~l~~L----~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l 711 (1085)
.++.. + .+++| ..+++..+ ......|..+...
T Consensus 163 ~~~~~~~~~l~~L~~~~~~L~l~~n------------------------------------------~l~~~~~~~~~~~ 200 (570)
T 2z63_A 163 SIYCTDLRVLHQMPLLNLSLDLSLN------------------------------------------PMNFIQPGAFKEI 200 (570)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTTC------------------------------------------CCCEECTTTTTTC
T ss_pred eecHHHccchhccchhhhhcccCCC------------------------------------------CceecCHHHhccC
Confidence 66543 2 44455 33443211 1111122222222
Q ss_pred ccccEEEEcCCCCCccccchhhHhhcccc--------------------------------cEEEeccccchHHHhccCC
Q 037935 712 QSLTRLIVWGCDKLKYIFSASTIQSLEQL--------------------------------QHLEIRLCKSLQEIISENR 759 (1085)
Q Consensus 712 ~~L~~L~L~~~~~l~~l~~~~~l~~l~~L--------------------------------~~L~l~~~~~l~~i~~~~~ 759 (1085)
+|+.|++++|...... ....++.++++ +.+.+.++..+.....
T Consensus 201 -~L~~L~l~~n~~~~~~-~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~--- 275 (570)
T 2z63_A 201 -RLHKLTLRNNFDSLNV-MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII--- 275 (570)
T ss_dssp -EEEEEEEESCCSCTTH-HHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST---
T ss_pred -cceeEecccccccccc-hhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch---
Confidence 4555555543211110 01122333333 3333333321111100
Q ss_pred cccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccc
Q 037935 760 TDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLE 839 (1085)
Q Consensus 760 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ 839 (1085)
.....+++|+.|+++++. +..++.. ...+ +|++|.+.+|..- .+| ...+++|+
T Consensus 276 ----~~~~~l~~L~~L~l~~~~-l~~l~~~--~~~~-~L~~L~l~~n~~~-~l~------------------~~~l~~L~ 328 (570)
T 2z63_A 276 ----DLFNCLTNVSSFSLVSVT-IERVKDF--SYNF-GWQHLELVNCKFG-QFP------------------TLKLKSLK 328 (570)
T ss_dssp ----TTTGGGTTCSEEEEESCE-ECSCCBC--CSCC-CCSEEEEESCBCS-SCC------------------BCBCSSCC
T ss_pred ----hhhcCcCcccEEEecCcc-chhhhhh--hccC-CccEEeeccCccc-ccC------------------cccccccC
Confidence 112246788888887753 3333222 2334 7888888887533 222 13478999
Q ss_pred eeeeccCCceeeecccCCcCccCCceEEEecCCcccccc--hhHHhhccccceEEeecccccEEEecCCccccccccccc
Q 037935 840 GLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFP--LDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLAL 917 (1085)
Q Consensus 840 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~ 917 (1085)
.|++++|.+....+. ..+++|++|++++|.++... +..+..+++|+.|++++|.+..+++ .+..+++
T Consensus 329 ~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~~~~l~~ 397 (570)
T 2z63_A 329 RLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-------NFLGLEQ 397 (570)
T ss_dssp EEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-------EEETCTT
T ss_pred EEeCcCCcccccccc----ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-------cccccCC
Confidence 999999986654332 33799999999999998774 4567889999999999999877653 1556889
Q ss_pred cceeccCCccccccccc-CCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEeccccCcccccchhhhhhcc
Q 037935 918 IKRLNLTRLNHLQQLWK-HDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLE 996 (1085)
Q Consensus 918 L~~L~l~~c~~L~~l~~-~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~ 996 (1085)
|+.|+++++ .+..... ..+ ..+++|+.|++++| .+....+..+..+++|++|++++|. +.+...+..+..++
T Consensus 398 L~~L~l~~n-~l~~~~~~~~~----~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 398 LEHLDFQHS-NLKQMSEFSVF----LSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELR 470 (570)
T ss_dssp CCEEECTTS-EEESCTTSCTT----TTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCT
T ss_pred CCEEEccCC-ccccccchhhh----hcCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCc-Cccccchhhhhccc
Confidence 999999984 4544422 112 35789999999999 5666667778899999999999875 44211235577899
Q ss_pred cccEEEEcCCcccccccccccccccccccceeeccccccccccccccceecCCCccccCCCcCceeeccCCCccccc
Q 037935 997 RLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSKLSALSLFDLDSLTSFSSGNYAFKLPSLQDLWVIGCPKMKLFT 1073 (1085)
Q Consensus 997 ~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~lp 1073 (1085)
+|++|++++|. ++.+.+. ....+++|+.|++++| .++.++...+ .++++|++|++++||--...|
T Consensus 471 ~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 471 NLTFLDLSQCQ-LEQLSPT---------AFNSLSSLQVLNMASN-QLKSVPDGIF-DRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TCCEEECTTSC-CCEECTT---------TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCBCCCTT
T ss_pred CCCEEECCCCc-cccCChh---------hhhcccCCCEEeCCCC-cCCCCCHHHh-hcccCCcEEEecCCcccCCCc
Confidence 99999999985 5554321 1223789999999997 5777776543 689999999999976444333
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=6.4e-30 Score=320.28 Aligned_cols=145 Identities=19% Similarity=0.266 Sum_probs=95.5
Q ss_pred eEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCc-ccCC-chhhhccccccEEecc
Q 037935 495 YAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVR-LFSL-PSSIGQLTKLRMLDLT 572 (1085)
Q Consensus 495 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~-i~~l-p~~i~~L~~L~~L~Ls 572 (1085)
+.++.++++++.+|. -.+++++|++++|. +..+++..|.++++|++|+|++|. +..+ |..|+++++|++|+|+
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCc---CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 345556666777776 34677777777776 555555557777777777777773 3344 5667777777777777
Q ss_pred CcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHH--hhcCCCCcEEEEEeccCCCCCC--cc-cccc
Q 037935 573 DCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDE--LMHLQRLTTLEIDVEDDSILPD--GL-FTKK 647 (1085)
Q Consensus 573 ~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~l~~~~~~~~~~--~~-~l~~ 647 (1085)
+| .+..++++.|+++++|++|+|++|.+. ...+.. +.++++|++|++++|.+..++. .+ .+++
T Consensus 82 ~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~-----------~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~ 149 (844)
T 3j0a_A 82 SS-KIYFLHPDAFQGLFHLFELRLYFCGLS-----------DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149 (844)
T ss_dssp TC-CCCEECTTSSCSCSSCCCEECTTCCCS-----------SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred CC-cCcccCHhHccCCcccCEeeCcCCCCC-----------cccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence 77 677665555677777777777777762 212222 6677777777777777766543 23 6677
Q ss_pred cceeeEEec
Q 037935 648 LERFDISIG 656 (1085)
Q Consensus 648 L~~L~l~~~ 656 (1085)
|+.|+++.+
T Consensus 150 L~~L~Ls~N 158 (844)
T 3j0a_A 150 LKSIDFSSN 158 (844)
T ss_dssp CCEEEEESS
T ss_pred CCEEECCCC
Confidence 777777654
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=311.71 Aligned_cols=452 Identities=16% Similarity=0.202 Sum_probs=276.8
Q ss_pred ccccceEEEeeccCccccccc--CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCch-hhhccccc
Q 037935 490 ALKKCYAISLLNSSIHEVSLE--FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKL 566 (1085)
Q Consensus 490 ~~~~~r~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L 566 (1085)
..+++++|++++|.+..++.. ..+++|++|++.+|. ...+++..|.++++|++|++++|.++.+|. .++++++|
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc---CCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 456899999999999988653 389999999999997 677887789999999999999999999875 69999999
Q ss_pred cEEeccCcccccc--cchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCC----cEEEEEeccCCCCC
Q 037935 567 RMLDLTDCLQLKF--IVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRL----TTLEIDVEDDSILP 640 (1085)
Q Consensus 567 ~~L~Ls~~~~l~~--lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L----~~L~l~~~~~~~~~ 640 (1085)
++|++++| .++. +|.. |+++++|++|++++|.+.. ..+..++.+++| ..|+++.|.+..++
T Consensus 127 ~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 127 KELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS-----------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp CEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCCE-----------ECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred cEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccce-----------ecHHHccchhccchhhhhcccCCCCceecC
Confidence 99999999 8876 5766 5999999999999999842 233445555666 79999999988877
Q ss_pred Ccc-cccccceeeEEecCCCccccc-c---cc---------cccccccccccceeehhhhhhc--ccccccccc-cccCC
Q 037935 641 DGL-FTKKLERFDISIGDGSFDSTK-I---IG---------NDWFQTFNIQSIYIFCIVMALE--LNAINVDEI-WHYNQ 703 (1085)
Q Consensus 641 ~~~-~l~~L~~L~l~~~~~~~~~~~-~---l~---------~~~~~~~~l~~~~l~~~~~~~~--L~~l~L~~~-~~~~~ 703 (1085)
... ...+|+.|++..+........ . +. ..+....++.......+..+.. ++.+.+..+ .....
T Consensus 194 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~ 273 (570)
T 2z63_A 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273 (570)
T ss_dssp TTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESC
T ss_pred HHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhh
Confidence 654 445788888875421111000 0 00 0000001111111111111111 112222222 22334
Q ss_pred CCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCcc
Q 037935 704 LPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPEL 783 (1085)
Q Consensus 704 ~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 783 (1085)
.|.++..+++|+.|++++|. +..++. .+..+ +|+.|++++|.. ..++. ..+++|+.|.+.++...
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~-l~~l~~--~~~~~-~L~~L~l~~n~~-~~l~~----------~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVT-IERVKD--FSYNF-GWQHLELVNCKF-GQFPT----------LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp STTTTGGGTTCSEEEEESCE-ECSCCB--CCSCC-CCSEEEEESCBC-SSCCB----------CBCSSCCEEEEESCBSC
T ss_pred chhhhcCcCcccEEEecCcc-chhhhh--hhccC-CccEEeeccCcc-cccCc----------ccccccCEEeCcCCccc
Confidence 56666677777777777764 334432 35555 777777777652 22211 24667777777765422
Q ss_pred ccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCC
Q 037935 784 RCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGS 863 (1085)
Q Consensus 784 ~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 863 (1085)
.... ...+++|++|++++|..-... ........+++|++|++++|.+...++. +.. +++
T Consensus 339 ~~~~----~~~~~~L~~L~l~~n~l~~~~--------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~--l~~ 397 (570)
T 2z63_A 339 NAFS----EVDLPSLEFLDLSRNGLSFKG--------------CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG--LEQ 397 (570)
T ss_dssp CBCC----CCBCTTCCEEECCSSCCBEEE--------------EEEHHHHTCSCCCEEECCSCSEEEEEEE-EET--CTT
T ss_pred cccc----cccCCCCCEEeCcCCccCccc--------------cccccccccCccCEEECCCCcccccccc-ccc--cCC
Confidence 2211 145667777777666422110 0011223466777777777776665544 333 567
Q ss_pred ceEEEecCCcccccch-hHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccc-cccccCCCchhh
Q 037935 864 LKQLRVGDDDLACFPL-DLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHL-QQLWKHDSKELD 941 (1085)
Q Consensus 864 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L-~~l~~~~~~~~~ 941 (1085)
|++|++++|.++..++ ..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.-. ..++...
T Consensus 398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~p~~~----- 466 (570)
T 2z63_A 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------GIFNGLSSLEVLKMAGNSFQENFLPDIF----- 466 (570)
T ss_dssp CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT------TTTTTCTTCCEEECTTCEEGGGEECSCC-----
T ss_pred CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch------hhhhcCCcCcEEECcCCcCccccchhhh-----
Confidence 7777777776665543 345667777777777776555432 23445666777777664322 1233211
Q ss_pred hHhhhhceeeeeccccccccCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCc
Q 037935 942 FIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCP 1007 (1085)
Q Consensus 942 ~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 1007 (1085)
..+++|+.|++++| .+..+.|..+..+++|++|++++| +++.+ ++..+..+++|++|++++|+
T Consensus 467 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 467 TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSV-PDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCC-CHHHhhcccCCcEEEecCCc
Confidence 23566777777666 455555556666667777777664 45554 23445566667777776654
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.9e-30 Score=310.91 Aligned_cols=149 Identities=21% Similarity=0.282 Sum_probs=83.4
Q ss_pred cccceEEEeeccCcccccc-c-CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchh-hhcccccc
Q 037935 491 LKKCYAISLLNSSIHEVSL-E-FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSS-IGQLTKLR 567 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~~~~l~~-~-~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~ 567 (1085)
...+++|++++|.+..++. . ..+++|++|++++|. +..+++..|.++++|++|++++|.++.+|.. ++++++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC---cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 3556666666666655532 2 256666666666665 4455555566666666666666666665543 66666666
Q ss_pred EEeccCccccccc--chhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCC-CCcc-
Q 037935 568 MLDLTDCLQLKFI--VPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSIL-PDGL- 643 (1085)
Q Consensus 568 ~L~Ls~~~~l~~l--p~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~-~~~~- 643 (1085)
+|++++| .++.+ |.. ++++++|++|++++|.+. .......+.++++|++|++++|.+... |..+
T Consensus 102 ~L~Ls~n-~l~~~~~~~~-~~~l~~L~~L~L~~n~~~----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 102 YLNLMGN-PYQTLGVTSL-FPNLTNLQTLRIGNVETF----------SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp EEECTTC-CCSSSCSSCS-CTTCTTCCEEEEEESSSC----------CEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred EEECCCC-cccccchhhh-hhccCCccEEECCCCccc----------cccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 6666666 55533 332 466666666666666531 111123455666666666666665542 2333
Q ss_pred cccccceeeEE
Q 037935 644 FTKKLERFDIS 654 (1085)
Q Consensus 644 ~l~~L~~L~l~ 654 (1085)
.+++|+.|++.
T Consensus 170 ~l~~L~~L~l~ 180 (549)
T 2z81_A 170 SIRDIHHLTLH 180 (549)
T ss_dssp TCSEEEEEEEE
T ss_pred ccccCceEecc
Confidence 45555555554
No 17
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=2.8e-29 Score=302.40 Aligned_cols=288 Identities=18% Similarity=0.301 Sum_probs=215.2
Q ss_pred CCCccccchHHHHHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhh-ccCC-CEEEEEEeCCCcCHHHHHHH-
Q 037935 158 KGYEAFESRVSTLKSIQNALT--DVNVSIIGVYGMGGIGKTTLVKEFARQARE-KKLF-DRVVFSEVSQTPDIKKIQGE- 232 (1085)
Q Consensus 158 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~- 232 (1085)
..+..|+||+.++++|.+++. .++.++|+|+||||+||||||++++++.+. +.+| +.++|++++.. +...++..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 345679999999999999987 356799999999999999999999987654 5668 58999999875 33333333
Q ss_pred --HHHHhCCC-----CCCchHHHHHHHHHHHHHc-CCcEEEEEeCCCCcccccccccccCCCCCCcEEEe----------
Q 037935 233 --IAEKLGLE-----LSDEAEYRRASRLYERLKN-ENKILVILDNIWKYLDLDTIGIPFGNDHEGYNFLI---------- 294 (1085)
Q Consensus 233 --i~~~l~~~-----~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~~~~~~~~~~~~~~~gs~ilv---------- 294 (1085)
++..++.. ............+...+.. .+++||||||||+...++.+ ..|++|||
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHh
Confidence 34455521 1122223334455555542 37999999999987655443 34566665
Q ss_pred -----------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHHHHhcCCHHHHHHHHHHhcCCC
Q 037935 295 -----------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRELQTPS 363 (1085)
Q Consensus 295 -----------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~~~~l~~~~ 363 (1085)
++|+.+|++++|...++.. .....+.+.+|+++|+|+|+||..+|+.++... ..|..+++.+....
T Consensus 273 ~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~ 349 (591)
T 1z6t_A 273 VMGPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQ 349 (591)
T ss_dssp CCSCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCC
T ss_pred cCCCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhH
Confidence 4899999999999998642 223356789999999999999999999998653 37988888876554
Q ss_pred CCCC----CCCcccchhhHHHHHhcCChHHHHHHHHhccccCCC--CCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHH
Q 037935 364 VVNF----EGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNS--FYLIDLLRYSMGLGLFHGVNKMEDARNKLYALVH 437 (1085)
Q Consensus 364 ~~~~----~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~--i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~ 437 (1085)
.... ......+..++..||+.||+ +.|.||.+||+||++ |+.+.+...|.++ .++ ..++++
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------~~~----~~~~l~ 416 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME--------TEE----VEDILQ 416 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC--------HHH----HHHHHH
T ss_pred HHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC--------HHH----HHHHHH
Confidence 2211 12234688999999999998 699999999999986 8889999999643 122 344689
Q ss_pred HHhHcccceec--CCcceEEEcHHHHHHHHHHhh
Q 037935 438 ELRDCCLLLEG--DRNETFYMHDVVCDVAVSIAC 469 (1085)
Q Consensus 438 ~L~~~~ll~~~--~~~~~~~mHdl~~~~~~~~~~ 469 (1085)
+|+++||++.. +...+|+||+++|++++....
T Consensus 417 ~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 417 EFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 99999999754 334589999999999998743
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2e-28 Score=293.46 Aligned_cols=487 Identities=14% Similarity=0.106 Sum_probs=276.8
Q ss_pred EEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEeccCcc
Q 037935 497 ISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDCL 575 (1085)
Q Consensus 497 Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~ 575 (1085)
.+.+++.++.+|..+. ++|++|++++|. +..+++..|.++++|++|++++|.++.++ ..|+++++|++|++++|
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n- 84 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNK---ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN- 84 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSSC---CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred EECCCCccccccccCC-CCccEEECcCCc---cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-
Confidence 4566778888887653 899999999998 66776667999999999999999999875 68999999999999999
Q ss_pred cccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEecc-CCCCCCc-c-cccccceee
Q 037935 576 QLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVED-DSILPDG-L-FTKKLERFD 652 (1085)
Q Consensus 576 ~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~~~-~-~l~~L~~L~ 652 (1085)
.++.+|+..|+++++|++|++++|.+... ..+..++++++|++|++++|. +..++.. + .+++|+.|+
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTL----------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSS----------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred ccCccCHHHhccCCCCcEEECCCCccccc----------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence 99999998789999999999999988421 223457899999999999997 5666643 3 788999999
Q ss_pred EEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCc-ccccccccEEEEcCCCCCccc-cc
Q 037935 653 ISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAM-VPCFQSLTRLIVWGCDKLKYI-FS 730 (1085)
Q Consensus 653 l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~-~~~l~~L~~L~L~~~~~l~~l-~~ 730 (1085)
+..+.-. ......+..+..|+.+++..+... .+|.+ +..+++|++|++++|...... .+
T Consensus 155 L~~n~l~------------------~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 215 (549)
T 2z81_A 155 IKALSLR------------------NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP 215 (549)
T ss_dssp EEETTCC------------------EECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCC
T ss_pred ccCCccc------------------ccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccc
Confidence 9754311 001111122223333333332221 12222 234667777777776443311 01
Q ss_pred hhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccc--cccC--CCcccCCCcccceeeccC
Q 037935 731 ASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELR--CLYP--GMHTSEWPALKNLVACNC 806 (1085)
Q Consensus 731 ~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~--~~~~~~~~~L~~L~i~~c 806 (1085)
......+++|+.|++++|......+.... .....+++|+.+.+++|.... .+.. ......+++|+.|.+.++
T Consensus 216 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 291 (549)
T 2z81_A 216 LPVDEVSSPMKKLAFRGSVLTDESFNELL----KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291 (549)
T ss_dssp CSSCCCCCCCCEEEEESCEEEHHHHHHHH----GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred cchhhhhhcccceeccccccchhHHHHHH----HHhhhhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence 11233466777777776653221111000 011135666666666653211 0100 001234556666666554
Q ss_pred CCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccch---hHHh
Q 037935 807 DKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPL---DLLE 883 (1085)
Q Consensus 807 ~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~ 883 (1085)
..-.... ...+..+....++|+.|++++|.+..++...+.. +++|++|++++|.++...+ ..+.
T Consensus 292 ~i~~~~~-----------~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~~~ 358 (549)
T 2z81_A 292 HIPQFYL-----------FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH--LKSLEFLDLSENLMVEEYLKNSACKG 358 (549)
T ss_dssp BCSCGGG-----------SCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHH--CTTCCEEECCSSCCCHHHHHHHTCTT
T ss_pred ccchhhh-----------cccchhhhhhcccceEEEeccCccccCCHHHHhc--CccccEEEccCCccccccccchhhhh
Confidence 3211100 0001111223456666666666655443322211 4566666666666654321 1234
Q ss_pred hccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeeccccccccCC
Q 037935 884 RFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLP 963 (1085)
Q Consensus 884 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 963 (1085)
.+++|+.|++++|.++.+... ...+..+++|+.|++++ +.++.++... ..+++|+.|++++| .+..++.
T Consensus 359 ~l~~L~~L~Ls~N~l~~~~~~----~~~~~~l~~L~~L~Ls~-N~l~~lp~~~-----~~~~~L~~L~Ls~N-~l~~l~~ 427 (549)
T 2z81_A 359 AWPSLQTLVLSQNHLRSMQKT----GEILLTLKNLTSLDISR-NTFHPMPDSC-----QWPEKMRFLNLSST-GIRVVKT 427 (549)
T ss_dssp SSTTCCEEECTTSCCCCHHHH----HHHGGGCTTCCEEECTT-CCCCCCCSCC-----CCCTTCCEEECTTS-CCSCCCT
T ss_pred ccccCcEEEccCCcccccccc----hhhhhcCCCCCEEECCC-CCCccCChhh-----cccccccEEECCCC-Ccccccc
Confidence 556666666666665443210 11244556666666666 3455544321 13456666666666 3433322
Q ss_pred CCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccccccccccccccceeecccccccccccccc
Q 037935 964 SSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSKLSALSLFDLDSL 1043 (1085)
Q Consensus 964 ~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 1043 (1085)
. + .++|++|++++| +++.+ ...+++|++|++++| .++.++. ...+++|+.|+++++ .+
T Consensus 428 ~-~--~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N-~l~~ip~-----------~~~l~~L~~L~Ls~N-~l 485 (549)
T 2z81_A 428 C-I--PQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRN-KLKTLPD-----------ASLFPVLLVMKISRN-QL 485 (549)
T ss_dssp T-S--CTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCSSCCC-----------GGGCTTCCEEECCSS-CC
T ss_pred h-h--cCCceEEECCCC-Chhhh-----cccCChhcEEECCCC-ccCcCCC-----------cccCccCCEEecCCC-cc
Confidence 1 1 246666666654 34443 135666666666665 3444422 112566666666664 45
Q ss_pred ceecCCCccccCCCcCceeeccCCC
Q 037935 1044 TSFSSGNYAFKLPSLQDLWVIGCPK 1068 (1085)
Q Consensus 1044 ~~l~~~~~~~~l~~L~~L~i~~C~~ 1068 (1085)
+.++.+. ...+++|++|++++||-
T Consensus 486 ~~~~~~~-~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 486 KSVPDGI-FDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCCCTTG-GGGCTTCCEEECCSSCB
T ss_pred CCcCHHH-HhcCcccCEEEecCCCc
Confidence 5555433 24566666666666653
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=3.4e-29 Score=302.77 Aligned_cols=215 Identities=13% Similarity=0.121 Sum_probs=141.1
Q ss_pred CCccceeeeccCCceeeecccCC-----cCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCcc-
Q 037935 835 LPNLEGLALSGKDITMILQDDFP-----QHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYL- 908 (1085)
Q Consensus 835 l~~L~~L~ls~n~l~~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~- 908 (1085)
+++|+.|++++|.+++..+..+. ...+++|++|++++|.++.+|...+..+++|+.|++++|.++.++......
T Consensus 401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480 (636)
T ss_dssp SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence 45788888888887765554444 002568888888888888888877777888888888888877554322110
Q ss_pred ccccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEecccc-----Cc
Q 037935 909 ETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACK-----KL 983 (1085)
Q Consensus 909 ~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~-----~L 983 (1085)
...+..+++|+.|++++ +.++.++..... ..+++|+.|++++| .+.. .|..+..+++|++|++++|. ++
T Consensus 481 ~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~---~~l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRF-NKLTKLSDDFRA---TTLPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp TEECTTGGGCCEEECCS-SCCCBCCGGGST---TTCTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred cccccccCCccEEECcC-CcCCccChhhhh---ccCCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence 01123345888888888 566666542210 14788889998887 5655 46668888899999986532 23
Q ss_pred ccccchhhhhhcccccEEEEcCCcccccccccccccccccccceeeccccccccccccccceecCCCc-------cccCC
Q 037935 984 MNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSKLSALSLFDLDSLTSFSSGNY-------AFKLP 1056 (1085)
Q Consensus 984 ~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~-------~~~l~ 1056 (1085)
... .+..+..+++|++|++++|. +..++. . .+++|+.|++++++ +..+....+ ...+.
T Consensus 555 ~~~-~p~~l~~l~~L~~L~Ls~N~-l~~ip~-----------~-~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~ 619 (636)
T 4eco_A 555 LRE-WPEGITLCPSLTQLQIGSND-IRKVNE-----------K-ITPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLF 619 (636)
T ss_dssp CCC-CCTTGGGCSSCCEEECCSSC-CCBCCS-----------C-CCTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEE
T ss_pred ccc-ChHHHhcCCCCCEEECCCCc-CCccCH-----------h-HhCcCCEEECcCCC-CccccHHhcchhhhcccceee
Confidence 322 23456778889999998876 455533 1 14788999998875 334432211 12344
Q ss_pred CcCceeeccCCCcc
Q 037935 1057 SLQDLWVIGCPKMK 1070 (1085)
Q Consensus 1057 ~L~~L~i~~C~~l~ 1070 (1085)
..+..+|.+||+|+
T Consensus 620 ~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 620 YDKTQDIRGCDALD 633 (636)
T ss_dssp CCTTSEEESCGGGC
T ss_pred cCCccccCCCcccc
Confidence 55777999999875
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.9e-29 Score=303.34 Aligned_cols=298 Identities=13% Similarity=0.076 Sum_probs=193.5
Q ss_pred CCCC--cccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCc-ccEEecCC
Q 037935 703 QLPA--MVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPR-VTTLKLDG 779 (1085)
Q Consensus 703 ~~p~--~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~-L~~L~l~~ 779 (1085)
.+|. ++..+++|+.|++++|.....+| .++.+++|+.|++++|. +..++.. ...+++ |+.|++++
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~-l~~lp~~--------l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQ-ITEIPAN--------FCGFTEQVENLSFAH 386 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSE-EEECCTT--------SEEECTTCCEEECCS
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCc-cccccHh--------hhhhcccCcEEEccC
Confidence 4676 77888999999998876554664 48889999999999887 3333221 124677 99999988
Q ss_pred CCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcC
Q 037935 780 LPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQH 859 (1085)
Q Consensus 780 ~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 859 (1085)
+. +..++.......+++|+.|++++|......|..... .....-.+++|+.|++++|.++.++...+..
T Consensus 387 N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~---------~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~- 455 (636)
T 4eco_A 387 NK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP---------LDPTPFKGINVSSINLSNNQISKFPKELFST- 455 (636)
T ss_dssp SC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT---------TCSSCCCCCCEEEEECCSSCCCSCCTHHHHT-
T ss_pred Cc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcc---------cccccccCCCCCEEECcCCccCcCCHHHHcc-
Confidence 64 444443322233558899998888654433311100 0000013578999999999988765544433
Q ss_pred ccCCceEEEecCCcccccchhHHhhc-------cccceEEeecccccEEEecCCccccccc--cccccceeccCCccccc
Q 037935 860 LFGSLKQLRVGDDDLACFPLDLLERF-------HNLEFLYLSDCSYEVVFSNEGYLETHAR--KLALIKRLNLTRLNHLQ 930 (1085)
Q Consensus 860 ~~~~L~~L~l~~n~l~~~~~~~~~~l-------~~L~~L~l~~~~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~c~~L~ 930 (1085)
+++|++|++++|.++.+|...+..+ ++|+.|++++|.++.++. .+. .+++|+.|++++ +.++
T Consensus 456 -l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-------~~~~~~l~~L~~L~Ls~-N~l~ 526 (636)
T 4eco_A 456 -GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD-------DFRATTLPYLVGIDLSY-NSFS 526 (636)
T ss_dssp -TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCG-------GGSTTTCTTCCEEECCS-SCCS
T ss_pred -CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccCh-------hhhhccCCCcCEEECCC-CCCC
Confidence 6889999999999998887665433 389999999999875532 233 678899999988 5666
Q ss_pred ccccCCCchhhhHhhhhceeeeeccc-----cccccCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcC
Q 037935 931 QLWKHDSKELDFIFQHLQILRVLHCQ-----NLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFG 1005 (1085)
Q Consensus 931 ~l~~~~~~~~~~~l~~L~~L~i~~c~-----~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~ 1005 (1085)
.++.. ...+++|+.|++++|. ++....|.++..+++|++|++++|. +..++.. + .++|+.|++++
T Consensus 527 ~ip~~-----~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~--~--~~~L~~L~Ls~ 596 (636)
T 4eco_A 527 KFPTQ-----PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK--I--TPNISVLDIKD 596 (636)
T ss_dssp SCCCG-----GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC--C--CTTCCEEECCS
T ss_pred CcChh-----hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh--H--hCcCCEEECcC
Confidence 66542 2357899999996532 4455567778889999999998864 6766322 2 27899999999
Q ss_pred Ccccccccccccccccccccceeeccccccccccccccc
Q 037935 1006 CPAMTEVIISDEDETANLKEEIVFSKLSALSLFDLDSLT 1044 (1085)
Q Consensus 1006 c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 1044 (1085)
|+ +..+....... ........+...+..++.+|+.|+
T Consensus 597 N~-l~~~~~~~~~~-~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 597 NP-NISIDLSYVCP-YIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CT-TCEEECTTTHH-HHHTTCCEEECCTTSEEESCGGGC
T ss_pred CC-CccccHHhcch-hhhcccceeecCCccccCCCcccc
Confidence 76 33432211000 000111223444556667777653
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=291.88 Aligned_cols=143 Identities=16% Similarity=0.161 Sum_probs=110.9
Q ss_pred eEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccccEEeccC
Q 037935 495 YAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDLTD 573 (1085)
Q Consensus 495 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~ 573 (1085)
++++++++.++.+|..+. ++|++|++++|. +..+++..|.++++|++|+|++|.++.+ |..|+++++|++|+|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNY---ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCc---ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 578888888888887665 888888888887 6677777788888899999998888886 67888888999999988
Q ss_pred cccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCccccccc--cee
Q 037935 574 CLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKL--ERF 651 (1085)
Q Consensus 574 ~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L--~~L 651 (1085)
| .++.+|.. .+++|++|++++|.+.. ...+..++++++|++|++++|.+... .-..+++| +.|
T Consensus 79 N-~l~~lp~~---~l~~L~~L~L~~N~l~~----------~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L~L~~L 143 (520)
T 2z7x_B 79 N-KLVKISCH---PTVNLKHLDLSFNAFDA----------LPICKEFGNMSQLKFLGLSTTHLEKS-SVLPIAHLNISKV 143 (520)
T ss_dssp S-CCCEEECC---CCCCCSEEECCSSCCSS----------CCCCGGGGGCTTCCEEEEEESSCCGG-GGGGGTTSCEEEE
T ss_pred C-ceeecCcc---ccCCccEEeccCCcccc----------ccchhhhccCCcceEEEecCcccchh-hccccccceeeEE
Confidence 8 88888874 78888999988888731 12346688888888888888887641 11155666 777
Q ss_pred eEEec
Q 037935 652 DISIG 656 (1085)
Q Consensus 652 ~l~~~ 656 (1085)
++..+
T Consensus 144 ~l~~n 148 (520)
T 2z7x_B 144 LLVLG 148 (520)
T ss_dssp EEEEC
T ss_pred Eeecc
Confidence 77654
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1e-28 Score=302.25 Aligned_cols=310 Identities=14% Similarity=0.088 Sum_probs=196.0
Q ss_pred cccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCC
Q 037935 711 FQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGM 790 (1085)
Q Consensus 711 l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 790 (1085)
+++|+.|+|++|... .+|....++.+++|+.|++++|. +..++ ....+++|+.|+++++. +..++..
T Consensus 547 l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp---------~~~~L~~L~~L~Ls~N~-l~~lp~~- 613 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLE---------AFGTNVKLTDLKLDYNQ-IEEIPED- 613 (876)
T ss_dssp TTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCC---------CCCTTSEESEEECCSSC-CSCCCTT-
T ss_pred cCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccch---------hhcCCCcceEEECcCCc-cccchHH-
Confidence 446777777665433 44331246677777777777665 22222 11246667777776643 3333222
Q ss_pred cccCCCc-ccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeeccc---CCcCccCCceE
Q 037935 791 HTSEWPA-LKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDD---FPQHLFGSLKQ 866 (1085)
Q Consensus 791 ~~~~~~~-L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~---~~~~~~~~L~~ 866 (1085)
...+++ |+.|.+++|. +..+|.... ....++|+.|++++|.+.+..+.. +....+++|+.
T Consensus 614 -l~~l~~~L~~L~Ls~N~-L~~lp~~~~--------------~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 614 -FCAFTDQVEGLGFSHNK-LKYIPNIFN--------------AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp -SCEECTTCCEEECCSSC-CCSCCSCCC--------------TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred -HhhccccCCEEECcCCC-CCcCchhhh--------------ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 344566 8888887775 333331100 011356999999999976643321 11112458999
Q ss_pred EEecCCcccccchhHHhhccccceEEeecccccEEEecCCcc-ccccccccccceeccCCcccccccccCCCchhhhHhh
Q 037935 867 LRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYL-ETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQ 945 (1085)
Q Consensus 867 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~ 945 (1085)
|++++|.++.+|...+..+++|+.|++++|.+..++...... ...+.++++|+.|++++| .++.++.... ...++
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~---~~~l~ 753 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR---ATTLP 753 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGS---TTTCT
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccchHHhh---hccCC
Confidence 999999999999888888999999999999988654322110 011334568999999984 6776665321 01578
Q ss_pred hhceeeeeccccccccCCCCcccccCccEEEecccc-----CcccccchhhhhhcccccEEEEcCCcccccccccccccc
Q 037935 946 HLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACK-----KLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDEDET 1020 (1085)
Q Consensus 946 ~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~-----~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~ 1020 (1085)
+|+.|++++| .+..+ |..+..+++|+.|++++|+ ++... .+..+..+++|+.|++++|. +..++.
T Consensus 754 ~L~~L~Ls~N-~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~-L~~Ip~------ 823 (876)
T 4ecn_A 754 YLSNMDVSYN-CFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSND-IRKVDE------ 823 (876)
T ss_dssp TCCEEECCSS-CCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSC-CCBCCS------
T ss_pred CcCEEEeCCC-CCCcc-chhhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCCC-CCccCH------
Confidence 9999999998 56664 6668899999999998733 33333 23456789999999999976 466643
Q ss_pred cccccceeeccccccccccccccceecCCCc-------cccCCCcCceeeccCCCcc
Q 037935 1021 ANLKEEIVFSKLSALSLFDLDSLTSFSSGNY-------AFKLPSLQDLWVIGCPKMK 1070 (1085)
Q Consensus 1021 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~-------~~~l~~L~~L~i~~C~~l~ 1070 (1085)
. .+++|+.|++++|+ +.++....+ ...+......+|.+||++.
T Consensus 824 -----~-l~~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 824 -----K-LTPQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp -----C-CCSSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred -----h-hcCCCCEEECCCCC-CCccChHHccccccchheeecCCCccccCCCCCcc
Confidence 1 24799999999986 444442221 1122333455788999875
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.4e-28 Score=300.87 Aligned_cols=356 Identities=13% Similarity=0.103 Sum_probs=189.9
Q ss_pred cChhhhcCCCcceEEEecCCcccC------------------Cchhhh--ccccccEEeccCcccccccchhhhhccccC
Q 037935 532 IPDNFFKGMKKLRVVDLTRVRLFS------------------LPSSIG--QLTKLRMLDLTDCLQLKFIVPNILSSFTRL 591 (1085)
Q Consensus 532 l~~~~~~~l~~Lr~L~Ls~~~i~~------------------lp~~i~--~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L 591 (1085)
+|.. |.++++|++|+|++|.++. +|..++ ++++|++|+|++|.....+|.. +++|++|
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L 517 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPEL 517 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCC
Confidence 4543 6667777777777777766 676666 7777777777777334555644 4777777
Q ss_pred CEEeccCCC-cchhhcccCCcccc-ccHHHhhc-------CCCCcEEEEEeccCCCCCC--cc-cccccceeeEEecCCC
Q 037935 592 EELYMGSCS-IKWEVRKGNSERSN-ASLDELMH-------LQRLTTLEIDVEDDSILPD--GL-FTKKLERFDISIGDGS 659 (1085)
Q Consensus 592 ~~L~L~~~~-~~~~~~~~~~~~~~-~~~~~l~~-------L~~L~~L~l~~~~~~~~~~--~~-~l~~L~~L~l~~~~~~ 659 (1085)
++|++++|. +. . ..|..+++ +++|++|++++|.+..+|. .+ .+++|+.|+++.+
T Consensus 518 ~~L~Ls~N~~ls-----------g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N--- 583 (876)
T 4ecn_A 518 QSLNIACNRGIS-----------AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN--- 583 (876)
T ss_dssp CEEECTTCTTSC-----------HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS---
T ss_pred CEEECcCCCCcc-----------cccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC---
Confidence 777777776 42 1 22333333 3377777777776666665 33 4555555554321
Q ss_pred cccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchhhHhhccc
Q 037935 660 FDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQ 739 (1085)
Q Consensus 660 ~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~ 739 (1085)
... .+| .+..+++|+.|+|++|... .+| ..+..+++
T Consensus 584 ---------------------------------------~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp--~~l~~l~~ 619 (876)
T 4ecn_A 584 ---------------------------------------KVR-HLE-AFGTNVKLTDLKLDYNQIE-EIP--EDFCAFTD 619 (876)
T ss_dssp ---------------------------------------CCC-BCC-CCCTTSEESEEECCSSCCS-CCC--TTSCEECT
T ss_pred ---------------------------------------Ccc-cch-hhcCCCcceEEECcCCccc-cch--HHHhhccc
Confidence 111 234 4555666666666665433 442 23556666
Q ss_pred -ccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCC
Q 037935 740 -LQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDEND 818 (1085)
Q Consensus 740 -L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~ 818 (1085)
|+.|++++|. +..++.... ....++|+.|++++ |......|.....
T Consensus 620 ~L~~L~Ls~N~-L~~lp~~~~------~~~~~~L~~L~Ls~--------------------------N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 620 QVEGLGFSHNK-LKYIPNIFN------AKSVYVMGSVDFSY--------------------------NKIGSEGRNISCS 666 (876)
T ss_dssp TCCEEECCSSC-CCSCCSCCC------TTCSSCEEEEECCS--------------------------SCTTTTSSSCSSC
T ss_pred cCCEEECcCCC-CCcCchhhh------ccccCCCCEEECcC--------------------------CcCCCccccchhh
Confidence 6666666665 222211000 00122355555554 3222111100000
Q ss_pred CCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhh-------ccccceE
Q 037935 819 QFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLER-------FHNLEFL 891 (1085)
Q Consensus 819 ~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-------l~~L~~L 891 (1085)
. ..-.+++|+.|++++|.++.++...+.. +++|+.|++++|.++.+|...+.. +++|+.|
T Consensus 667 l-----------~~~~~~~L~~L~Ls~N~L~~lp~~~~~~--l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L 733 (876)
T 4ecn_A 667 M-----------DDYKGINASTVTLSYNEIQKFPTELFAT--GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733 (876)
T ss_dssp T-----------TTCCCCCEEEEECCSSCCCSCCHHHHHT--TCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEE
T ss_pred h-----------ccccCCCcCEEEccCCcCCccCHHHHcc--CCCCCEEECCCCcCCccChHHhccccccccccCCccEE
Confidence 0 0001345666666666655443322212 455666666666666555443322 2366666
Q ss_pred EeecccccEEEecCCccccccc--cccccceeccCCcccccccccCCCchhhhHhhhhceeeeeccc-----cccccCCC
Q 037935 892 YLSDCSYEVVFSNEGYLETHAR--KLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQ-----NLLSLLPS 964 (1085)
Q Consensus 892 ~l~~~~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~-----~l~~~~~~ 964 (1085)
++++|.++.++ ..+. .+++|+.|++++ +.++.++.. ...+++|+.|++++|+ ++....|.
T Consensus 734 ~Ls~N~L~~lp-------~~l~~~~l~~L~~L~Ls~-N~L~~lp~~-----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 734 DLRFNKLTSLS-------DDFRATTLPYLSNMDVSY-NCFSSFPTQ-----PLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp ECCSSCCCCCC-------GGGSTTTCTTCCEEECCS-SCCSSCCCG-----GGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred ECCCCCCccch-------HHhhhccCCCcCEEEeCC-CCCCccchh-----hhcCCCCCEEECCCCCCcccccccccChH
Confidence 66666655332 1122 455666666665 344444321 1245666777666532 44555677
Q ss_pred CcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccc
Q 037935 965 SSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEV 1012 (1085)
Q Consensus 965 ~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l 1012 (1085)
.+..+++|+.|++++|. +..++.. + .++|+.|++++|+ +..+
T Consensus 801 ~l~~L~~L~~L~Ls~N~-L~~Ip~~--l--~~~L~~LdLs~N~-l~~i 842 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSND-IRKVDEK--L--TPQLYILDIADNP-NISI 842 (876)
T ss_dssp TGGGCSSCCEEECCSSC-CCBCCSC--C--CSSSCEEECCSCT-TCEE
T ss_pred HHhcCCCCCEEECCCCC-CCccCHh--h--cCCCCEEECCCCC-CCcc
Confidence 78888999999998864 5666332 2 2689999999976 4344
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1e-27 Score=293.47 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=125.8
Q ss_pred cCccccCCCccccccceEEEeeccCccccccc--CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC
Q 037935 479 NDAVWEWPDGDALKKCYAISLLNSSIHEVSLE--FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL 556 (1085)
Q Consensus 479 ~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l 556 (1085)
+..+...|. ..+..+++|++++|.++.++.. ..+++|++|++++|. +..++++.|.++++|++|+|++|+++.+
T Consensus 40 ~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 40 ELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 334455543 4677899999999999999753 389999999999997 7889888899999999999999999998
Q ss_pred ch-hhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEecc
Q 037935 557 PS-SIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVED 635 (1085)
Q Consensus 557 p~-~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 635 (1085)
|. .|++|++|++|+|++| .++.+|+..|+++++|++|++++|.+.. ...+..+..+++|++|++++|.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~----------~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS----------FKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCC----------CCCCGGGGGCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCcccc----------CCCchhhccchhhhhhcccCcc
Confidence 74 6899999999999999 9999998878999999999999998741 2245667889999999999999
Q ss_pred CCCCCCc
Q 037935 636 DSILPDG 642 (1085)
Q Consensus 636 ~~~~~~~ 642 (1085)
+..++..
T Consensus 185 l~~~~~~ 191 (635)
T 4g8a_A 185 IQSIYCT 191 (635)
T ss_dssp CCEECGG
T ss_pred ccccccc
Confidence 8877644
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.6e-28 Score=287.86 Aligned_cols=119 Identities=15% Similarity=0.187 Sum_probs=101.3
Q ss_pred ceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEeccCcccccccchhhhhccccCCEEe
Q 037935 517 EFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELY 595 (1085)
Q Consensus 517 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~ 595 (1085)
++|+++++. ...+|..++ ++|++|++++|.++.+| ..+.++++|++|++++| .++.++++.|+++++|++|+
T Consensus 3 ~~l~ls~n~---l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNG---LIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSC---CSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEE
T ss_pred ceEecCCCC---ccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEe
Confidence 678999987 678887644 89999999999999976 68999999999999999 99998776689999999999
Q ss_pred ccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCC--CCcc-cccccceeeEEec
Q 037935 596 MGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSIL--PDGL-FTKKLERFDISIG 656 (1085)
Q Consensus 596 L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~--~~~~-~l~~L~~L~l~~~ 656 (1085)
+++|.+...+ .. .+++|++|++++|.+..+ |..+ .+++|+.|+++.+
T Consensus 76 Ls~N~l~~lp------------~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 76 LSHNKLVKIS------------CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp CCSSCCCEEE------------CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred cCCCceeecC------------cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc
Confidence 9999984322 11 789999999999999874 4555 8899999999764
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=6.2e-26 Score=277.66 Aligned_cols=506 Identities=16% Similarity=0.118 Sum_probs=287.8
Q ss_pred EEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEeccCc
Q 037935 496 AISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDC 574 (1085)
Q Consensus 496 ~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~ 574 (1085)
.++-++.+++.+|..+. +++++|++++|. +..+++..|.++++|++|+|++|.|+.+| .+|.+|++|++|+|++|
T Consensus 35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP-FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcCccCCCCC-cCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 34444556778887653 589999999998 88899888999999999999999999986 47999999999999999
Q ss_pred ccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCC--Ccc-ccccccee
Q 037935 575 LQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILP--DGL-FTKKLERF 651 (1085)
Q Consensus 575 ~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~--~~~-~l~~L~~L 651 (1085)
+++.+|+++|++|++|++|++++|.+... ....++++++|++|++++|.+..++ ..+ .+++|+.|
T Consensus 111 -~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l-----------~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 111 -PIQSLALGAFSGLSSLQKLVAVETNLASL-----------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp -CCCEECGGGGTTCTTCCEEECTTSCCCCS-----------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred -cCCCCCHHHhcCCCCCCEEECCCCcCCCC-----------ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 99999999899999999999999998432 2234789999999999999987654 333 68899999
Q ss_pred eEEecCCCcccccccccccccccccccceeehhhhhhccc----ccccccccccCCCCCcccccccccEEEEcCCCCCcc
Q 037935 652 DISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELN----AINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKY 727 (1085)
Q Consensus 652 ~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~----~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~ 727 (1085)
+++.+. +.......+..+..+. ..++..+......|..+ ....+..+.+.++.....
T Consensus 179 ~L~~N~------------------l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~ 239 (635)
T 4g8a_A 179 DLSSNK------------------IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLN 239 (635)
T ss_dssp ECCSSC------------------CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHH
T ss_pred cccCcc------------------ccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhccccccc
Confidence 886432 1111111222222222 11122211111112211 222445555555432222
Q ss_pred ccchhhHhhcccccEEEeccccchHH--Hhc---c-------------------CCc-ccccccccCCcccEEecCCCCc
Q 037935 728 IFSASTIQSLEQLQHLEIRLCKSLQE--IIS---E-------------------NRT-DQVTAYFVFPRVTTLKLDGLPE 782 (1085)
Q Consensus 728 l~~~~~l~~l~~L~~L~l~~~~~l~~--i~~---~-------------------~~~-~~~~~~~~~~~L~~L~l~~~~~ 782 (1085)
. ....+..++.++...+........ +.. . ... ........+.+++.+.+.++..
T Consensus 240 ~-~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 318 (635)
T 4g8a_A 240 V-MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI 318 (635)
T ss_dssp H-HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE
T ss_pred c-cchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc
Confidence 1 122344455555444422110000 000 0 000 0000011223344444433221
Q ss_pred cccccCCCcccCCCcccceeeccCCCcccccCCCC----CCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCc
Q 037935 783 LRCLYPGMHTSEWPALKNLVACNCDKITLSQNDEN----DQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQ 858 (1085)
Q Consensus 783 l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~----~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 858 (1085)
.. .. .....++|+.|.+.+|..-...+.... .......... ......+++|+.|++++|.+..........
T Consensus 319 ~~-~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 393 (635)
T 4g8a_A 319 ER-VK---DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 393 (635)
T ss_dssp EE-CG---GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHH
T ss_pred cc-cc---ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccch
Confidence 11 00 012234455555555421111000000 0000000000 000123566666666666644332211111
Q ss_pred CccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCc
Q 037935 859 HLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSK 938 (1085)
Q Consensus 859 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~ 938 (1085)
..+.+|+.|++..+.....+.. +..+++|+.+++++|......+ ...+..+.+++.++++. +.+..+.....
T Consensus 394 ~~~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~-----~~~~~~l~~l~~l~ls~-n~l~~~~~~~~- 465 (635)
T 4g8a_A 394 FGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE-----FSVFLSLRNLIYLDISH-THTRVAFNGIF- 465 (635)
T ss_dssp HSCSCCCEEECCSCSEEEECSC-CTTCTTCCEEECTTSEEESTTS-----SCTTTTCTTCCEEECTT-SCCEECCTTTT-
T ss_pred hhhhhhhhhhcccccccccccc-ccccccccchhhhhcccccccc-----ccccccccccccccccc-ccccccccccc-
Confidence 1245666666665555554432 3456666666666665332221 12344566677777766 34444433222
Q ss_pred hhhhHhhhhceeeeeccccccccCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccccccc
Q 037935 939 ELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDED 1018 (1085)
Q Consensus 939 ~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 1018 (1085)
..+++|+.|++++|.....+.|..+..+++|++|++++| +++.+ ++..+..+++|++|++++| +++.++..
T Consensus 466 ---~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l-~~~~f~~l~~L~~L~Ls~N-~l~~l~~~--- 536 (635)
T 4g8a_A 466 ---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQL-SPTAFNSLSSLQVLNMSHN-NFFSLDTF--- 536 (635)
T ss_dssp ---TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTS-CCCBCCCG---
T ss_pred ---ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCc-ChHHHcCCCCCCEEECCCC-cCCCCChh---
Confidence 256788888888887676677777888888999999885 57766 3456778888899999886 46665431
Q ss_pred cccccccceeeccccccccccccccceecCCCccccC-CCcCceeeccCC
Q 037935 1019 ETANLKEEIVFSKLSALSLFDLDSLTSFSSGNYAFKL-PSLQDLWVIGCP 1067 (1085)
Q Consensus 1019 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l-~~L~~L~i~~C~ 1067 (1085)
....+++|+.|+++++ .++.++.+.+ .++ ++|++|+++++|
T Consensus 537 ------~~~~l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 537 ------PYKCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQND 578 (635)
T ss_dssp ------GGTTCTTCCEEECTTS-CCCBCCSSCT-TCCCTTCCEEECTTCC
T ss_pred ------HHhCCCCCCEEECCCC-cCCCCCHHHH-HhhhCcCCEEEeeCCC
Confidence 1112678888888875 4666666543 455 578888887754
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=7.7e-26 Score=270.79 Aligned_cols=454 Identities=15% Similarity=0.075 Sum_probs=257.7
Q ss_pred ceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccccEEecc
Q 037935 494 CYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDLT 572 (1085)
Q Consensus 494 ~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls 572 (1085)
.++++++++.++.+|.... ++|++|++++|. +..+++..|.++++|++|+|++|.++.+ |..|+++++|++|+++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNS---ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCC---ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 3788999999988887653 889999999887 6778877789999999999999999887 6778999999999999
Q ss_pred CcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCccccccc--ce
Q 037935 573 DCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKL--ER 650 (1085)
Q Consensus 573 ~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L--~~ 650 (1085)
+| .++.+|.. .+++|++|++++|.+... ..+..++++++|++|++++|.+.... -..+++| +.
T Consensus 109 ~N-~l~~lp~~---~l~~L~~L~Ls~N~l~~l----------~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~L~L~~ 173 (562)
T 3a79_B 109 HN-RLQNISCC---PMASLRHLDLSFNDFDVL----------PVCKEFGNLTKLTFLGLSAAKFRQLD-LLPVAHLHLSC 173 (562)
T ss_dssp TS-CCCEECSC---CCTTCSEEECCSSCCSBC----------CCCGGGGGCTTCCEEEEECSBCCTTT-TGGGTTSCEEE
T ss_pred CC-cCCccCcc---ccccCCEEECCCCCcccc----------CchHhhcccCcccEEecCCCccccCc-hhhhhhceeeE
Confidence 99 88899874 799999999999987321 22456888999999999998876522 1144555 88
Q ss_pred eeEEecCC--CcccccccccccccccccccceeehhhhhhcccccccccccccCCCCC-cccccccccEEEEcCCCC-Cc
Q 037935 651 FDISIGDG--SFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPA-MVPCFQSLTRLIVWGCDK-LK 726 (1085)
Q Consensus 651 L~l~~~~~--~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~-l~ 726 (1085)
|++..+.- ....... +..+.. ..+ .+.+..+......+. .+..+++|+.|+++++.. +.
T Consensus 174 L~L~~n~l~~~~~~~~~----------l~~l~~------~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 236 (562)
T 3a79_B 174 ILLDLVSYHIKGGETES----------LQIPNT------TVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236 (562)
T ss_dssp EEEEESSCCCCSSSCCE----------EEECCE------EEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred EEeecccccccccCccc----------ccccCc------ceE-EEEecCccchhhhhhhcccccceEEEecccccccccc
Confidence 87765431 0000000 000000 001 011222222222222 345678999999988631 11
Q ss_pred ccc-chhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeecc
Q 037935 727 YIF-SASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACN 805 (1085)
Q Consensus 727 ~l~-~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~ 805 (1085)
.++ ....+..+++|+.|++.++..-..... ........++|++|+++++.--..++........++|+.|.+.+
T Consensus 237 ~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~ 311 (562)
T 3a79_B 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSV-----KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311 (562)
T ss_dssp HHHHHHHHHHSCSSCEEEEEEEEEECHHHHH-----HHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred hHHHHHHHHhccCcceEEEecCCcCcHHHHH-----HHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence 110 122466778888888776652211100 00001123477777777653211222111111113333333322
Q ss_pred CCCccc-ccC-----------CCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCc
Q 037935 806 CDKITL-SQN-----------DENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDD 873 (1085)
Q Consensus 806 c~~L~~-~~~-----------~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 873 (1085)
+..-.. .|. ............+. .+...+++|++|++++|.+++..+..+.. +++|++|++++|+
T Consensus 312 ~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~N~ 388 (562)
T 3a79_B 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM-VCPPSPSSFTFLNFTQNVFTDSVFQGCST--LKRLQTLILQRNG 388 (562)
T ss_dssp EEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC-CCCSSCCCCCEEECCSSCCCTTTTTTCCS--CSSCCEEECCSSC
T ss_pred cccceeecChhhhhhhhccCcceEEEccCCCcccc-cCccCCCCceEEECCCCccccchhhhhcc--cCCCCEEECCCCC
Confidence 211100 000 00000000000000 00134677777777777766654444443 6777777777777
Q ss_pred ccccch--hHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhhceee
Q 037935 874 LACFPL--DLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILR 951 (1085)
Q Consensus 874 l~~~~~--~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~ 951 (1085)
++.++. ..+..+++|+.|++++|.++...+ ...+..+++|+.|+++++ .++..... ...++|+.|+
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~~~~------~l~~~L~~L~ 456 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAY-----DRTCAWAESILVLNLSSN-MLTGSVFR------CLPPKVKVLD 456 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS-----SCCCCCCTTCCEEECCSS-CCCGGGGS------SCCTTCSEEE
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccC-----hhhhcCcccCCEEECCCC-CCCcchhh------hhcCcCCEEE
Confidence 776542 335667777777777777655211 122344667777777773 33221110 0115677777
Q ss_pred eeccccccccCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCc
Q 037935 952 VLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCP 1007 (1085)
Q Consensus 952 i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 1007 (1085)
+++| ++..+++ ++..+++|++|++++| +++.++ ...+..+++|+.|++++|+
T Consensus 457 L~~N-~l~~ip~-~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 457 LHNN-RIMSIPK-DVTHLQALQELNVASN-QLKSVP-DGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCSS-CCCCCCT-TTTSSCCCSEEECCSS-CCCCCC-TTSTTTCTTCCCEECCSCC
T ss_pred CCCC-cCcccCh-hhcCCCCCCEEECCCC-CCCCCC-HHHHhcCCCCCEEEecCCC
Confidence 7776 5555433 3446777777777663 466553 2245667777777777755
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.1e-25 Score=262.75 Aligned_cols=377 Identities=14% Similarity=0.162 Sum_probs=206.2
Q ss_pred EEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCccc-CC-chhhhccccccEEeccC
Q 037935 496 AISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLF-SL-PSSIGQLTKLRMLDLTD 573 (1085)
Q Consensus 496 ~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~l-p~~i~~L~~L~~L~Ls~ 573 (1085)
.+...++.+..+|. . .++|++|++++|. +..+++..|.++++|++|++++|.+. .+ |..|+++++|++|+|++
T Consensus 14 ~~~c~~~~l~~lp~-l-~~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLHQVPE-L-PAHVNYVDLSLNS---IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCSSCCC-C-CTTCCEEECCSSC---CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcccCCC-C-CCccCEEEecCCc---cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 34555556666665 2 2667777777765 45555555677777777777777665 33 45567777777777777
Q ss_pred cccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHH--hhcCCCCcEEEEEeccCCCCCC-c-c-ccccc
Q 037935 574 CLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDE--LMHLQRLTTLEIDVEDDSILPD-G-L-FTKKL 648 (1085)
Q Consensus 574 ~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~l~~~~~~~~~~-~-~-~l~~L 648 (1085)
| .++.+++..|+++++|++|++++|.+. ...+.. +.++++|++|++++|.+..+.. . + .+++|
T Consensus 89 n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 89 N-QFLQLETGAFNGLANLEVLTLTQCNLD-----------GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp C-TTCEECTTTTTTCTTCCEEECTTSCCB-----------THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred C-ccCccChhhccCcccCCEEeCCCCCCC-----------ccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 7 666665444577777777777777662 112222 5667777777777777665532 2 2 45555
Q ss_pred ceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCccccc--ccccEEEEcCCCCCc
Q 037935 649 ERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCF--QSLTRLIVWGCDKLK 726 (1085)
Q Consensus 649 ~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l--~~L~~L~L~~~~~l~ 726 (1085)
+.|+++.+. .....|..+..+ .+|+.|++++|.. .
T Consensus 157 ~~L~L~~n~------------------------------------------l~~~~~~~l~~l~~~~L~~L~l~~n~l-~ 193 (455)
T 3v47_A 157 HVLDLTFNK------------------------------------------VKSICEEDLLNFQGKHFTLLRLSSITL-Q 193 (455)
T ss_dssp CEEECTTCC------------------------------------------BSCCCTTTSGGGTTCEEEEEECTTCBC-T
T ss_pred cEEeCCCCc------------------------------------------ccccChhhhhccccccccccccccCcc-c
Confidence 555553221 111122222222 4566666665532 2
Q ss_pred cccchh-------hHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCccc
Q 037935 727 YIFSAS-------TIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALK 799 (1085)
Q Consensus 727 ~l~~~~-------~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 799 (1085)
.+++.. .+..+++|+.|++++|.....++.... .....++|+.|.++++........ ...++.+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~ 265 (455)
T 3v47_A 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF-----DAIAGTKIQSLILSNSYNMGSSFG---HTNFKDPD 265 (455)
T ss_dssp TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH-----HHTTTCCEEEEECTTCTTTSCCTT---CCSSCCCC
T ss_pred ccchhhccccccccccccceeeeEecCCCcccccchhhhh-----ccccccceeeEeeccccccccccc---hhhhccCc
Confidence 221110 122345666666666653222211100 000135566666665432221100 00011100
Q ss_pred ceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccch
Q 037935 800 NLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPL 879 (1085)
Q Consensus 800 ~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 879 (1085)
...+ .....++|+.|++++|.++...+..+.. +++|++|++++|.++.+++
T Consensus 266 ~~~~---------------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 266 NFTF---------------------------KGLEASGVKTCDLSKSKIFALLKSVFSH--FTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTTT---------------------------GGGTTSCCCEEECCSSCCCEECTTTTTT--CTTCCEEECTTSCCCEECT
T ss_pred cccc---------------------------ccccccCceEEEecCccccccchhhccc--CCCCCEEECCCCcccccCh
Confidence 0000 0012468888888888888777666655 7888888888888888877
Q ss_pred hHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeecccccc
Q 037935 880 DLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLL 959 (1085)
Q Consensus 880 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~ 959 (1085)
..+..+++|+.|++++|.+..+.+ ..+..+++|+.|++++ | .+.
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~Ls~-----------------------------N-~l~ 360 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDS------RMFENLDKLEVLDLSY-----------------------------N-HIR 360 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECG------GGGTTCTTCCEEECCS-----------------------------S-CCC
T ss_pred hHhcCcccCCEEECCCCccCCcCh------hHhcCcccCCEEECCC-----------------------------C-ccc
Confidence 777888888888888888766532 2233344444444444 3 333
Q ss_pred ccCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCc
Q 037935 960 SLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCP 1007 (1085)
Q Consensus 960 ~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 1007 (1085)
.+.|..+..+++|++|++++| +++.+ +...+..+++|++|++++|+
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ccChhhccccccccEEECCCC-ccccC-CHhHhccCCcccEEEccCCC
Confidence 444444555566666666553 35544 23344556666666666654
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=3.9e-25 Score=257.90 Aligned_cols=149 Identities=19% Similarity=0.240 Sum_probs=76.4
Q ss_pred CCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCcccccccc
Q 037935 835 LPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARK 914 (1085)
Q Consensus 835 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~ 914 (1085)
+++|+.|++++|.++...+ +.. +++|++|++++|.++.++. +..+++|+.|++++|.+..+++ +..
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~--l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--------~~~ 307 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSG--LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--------ISN 307 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTT--CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--------GGG
T ss_pred CCCCCEEECCCCccccchh--hhc--CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--------hcC
Confidence 4445555555555444332 211 4455555555555554443 3445555555555555443321 233
Q ss_pred ccccceeccCCcccccccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEeccccCcccccchhhhhh
Q 037935 915 LALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKS 994 (1085)
Q Consensus 915 l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~ 994 (1085)
+++|+.|++++| .++.+.. ...+++|+.|++++| .+..+ ..+..+++|+.|++++|. +....+ +..
T Consensus 308 l~~L~~L~L~~n-~l~~~~~------~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~-l~~~~~---~~~ 373 (466)
T 1o6v_A 308 LKNLTYLTLYFN-NISDISP------VSSLTKLQRLFFYNN-KVSDV--SSLANLTNINWLSAGHNQ-ISDLTP---LAN 373 (466)
T ss_dssp CTTCSEEECCSS-CCSCCGG------GGGCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSSC-CCBCGG---GTT
T ss_pred CCCCCEEECcCC-cCCCchh------hccCccCCEeECCCC-ccCCc--hhhccCCCCCEEeCCCCc-cCccch---hhc
Confidence 445555555553 2332221 124566666666666 44443 235667777788877653 555532 567
Q ss_pred cccccEEEEcCCcccccc
Q 037935 995 LERLVSLRIFGCPAMTEV 1012 (1085)
Q Consensus 995 l~~L~~L~i~~c~~l~~l 1012 (1085)
+++|+.|++++|+ +..+
T Consensus 374 l~~L~~L~l~~n~-~~~~ 390 (466)
T 1o6v_A 374 LTRITQLGLNDQA-WTNA 390 (466)
T ss_dssp CTTCCEEECCCEE-EECC
T ss_pred CCCCCEEeccCCc-ccCC
Confidence 7778888887764 4443
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=4e-25 Score=257.74 Aligned_cols=218 Identities=18% Similarity=0.212 Sum_probs=164.6
Q ss_pred ccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCcccccc
Q 037935 708 VPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLY 787 (1085)
Q Consensus 708 ~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 787 (1085)
+..+++|+.|++++|. +..++ .+..+++|++|++++|.. ..+ .+...+++|+.|+++++. +..+.
T Consensus 173 ~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~l-~~~---------~~~~~l~~L~~L~l~~n~-l~~~~ 237 (466)
T 1o6v_A 173 LANLTTLERLDISSNK-VSDIS---VLAKLTNLESLIATNNQI-SDI---------TPLGILTNLDELSLNGNQ-LKDIG 237 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSSCC-CCC---------GGGGGCTTCCEEECCSSC-CCCCG
T ss_pred hccCCCCCEEECcCCc-CCCCh---hhccCCCCCEEEecCCcc-ccc---------ccccccCCCCEEECCCCC-cccch
Confidence 4567899999999875 44442 388999999999999872 221 123358999999999863 33331
Q ss_pred CCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEE
Q 037935 788 PGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQL 867 (1085)
Q Consensus 788 ~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 867 (1085)
....+++|+.|++.+|..-...+ ...+++|++|++++|.++...+ +.. +++|+.|
T Consensus 238 ---~l~~l~~L~~L~l~~n~l~~~~~------------------~~~l~~L~~L~l~~n~l~~~~~--~~~--l~~L~~L 292 (466)
T 1o6v_A 238 ---TLASLTNLTDLDLANNQISNLAP------------------LSGLTKLTELKLGANQISNISP--LAG--LTALTNL 292 (466)
T ss_dssp ---GGGGCTTCSEEECCSSCCCCCGG------------------GTTCTTCSEEECCSSCCCCCGG--GTT--CTTCSEE
T ss_pred ---hhhcCCCCCEEECCCCccccchh------------------hhcCCCCCEEECCCCccCcccc--ccC--CCccCeE
Confidence 24567899999999885432211 3458999999999999887655 333 7999999
Q ss_pred EecCCcccccchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhh
Q 037935 868 RVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHL 947 (1085)
Q Consensus 868 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L 947 (1085)
++++|.++.+++ +..+++|+.|++++|.++++.+ +..+++|+.|++++| .++.++. ...+++|
T Consensus 293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~l~~n-~l~~~~~------l~~l~~L 355 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--------VSSLTKLQRLFFYNN-KVSDVSS------LANLTNI 355 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--------GGGCTTCCEEECCSS-CCCCCGG------GTTCTTC
T ss_pred EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--------hccCccCCEeECCCC-ccCCchh------hccCCCC
Confidence 999999998875 6789999999999999876543 456889999999985 6665532 2357999
Q ss_pred ceeeeeccccccccCCCCcccccCccEEEeccccCcccc
Q 037935 948 QILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNL 986 (1085)
Q Consensus 948 ~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l 986 (1085)
+.|++++| .+....| +..+++|+.|++++|+ ++..
T Consensus 356 ~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~-~~~~ 390 (466)
T 1o6v_A 356 NWLSAGHN-QISDLTP--LANLTRITQLGLNDQA-WTNA 390 (466)
T ss_dssp CEEECCSS-CCCBCGG--GTTCTTCCEEECCCEE-EECC
T ss_pred CEEeCCCC-ccCccch--hhcCCCCCEEeccCCc-ccCC
Confidence 99999998 5666655 7889999999999865 5544
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=2.2e-25 Score=260.16 Aligned_cols=368 Identities=19% Similarity=0.214 Sum_probs=257.4
Q ss_pred ecCccccCCCccccccceEEEeeccCccccc-cc-CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccC
Q 037935 478 RNDAVWEWPDGDALKKCYAISLLNSSIHEVS-LE-FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFS 555 (1085)
Q Consensus 478 ~~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~-~~-~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~ 555 (1085)
.+..+...|. .+.++++|++++|.+..++ .. ..+++|++|++++|.. ...++...|.++++|++|+|++|.++.
T Consensus 18 ~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~--~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 18 INRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP--GLVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp CSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST--TCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred CCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc--cceECcccccccccCCEEeCCCCccCc
Confidence 3445555554 5678999999999998874 33 3899999999999973 346777789999999999999999988
Q ss_pred C-chhhhccccccEEeccCcccccc--cchhhhhccccCCEEeccCCCcchhhcccCCccccccHHH-hhcCCCCcEEEE
Q 037935 556 L-PSSIGQLTKLRMLDLTDCLQLKF--IVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDE-LMHLQRLTTLEI 631 (1085)
Q Consensus 556 l-p~~i~~L~~L~~L~Ls~~~~l~~--lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~L~l 631 (1085)
+ |..++++++|++|++++| .++. .+...++++++|++|++++|.+. ...+.. +.++++|++|++
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIK-----------KIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCC-----------SCCCCGGGGGCTTCCEEEC
T ss_pred cChhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccC-----------ccCcccccCCCCcccEEeC
Confidence 6 788999999999999999 8876 22333699999999999999984 222333 789999999999
Q ss_pred EeccCCCCCCcc--c--ccccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCC-
Q 037935 632 DVEDDSILPDGL--F--TKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPA- 706 (1085)
Q Consensus 632 ~~~~~~~~~~~~--~--l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~- 706 (1085)
++|.+..++... . ..+|+.|++..+. .....+.
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~------------------------------------------l~~~~~~~ 199 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSIT------------------------------------------LQDMNEYW 199 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCB------------------------------------------CTTCSTTC
T ss_pred CCCcccccChhhhhccccccccccccccCc------------------------------------------ccccchhh
Confidence 999987765432 2 2455555543211 1110111
Q ss_pred -------cccccccccEEEEcCCCCCccccchhhHhhc---ccccEEEeccccchHHHhccCCcccccccccCCcccEEe
Q 037935 707 -------MVPCFQSLTRLIVWGCDKLKYIFSASTIQSL---EQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLK 776 (1085)
Q Consensus 707 -------~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l---~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~ 776 (1085)
.+..+++|++|++++|...... +..+..+ ++|+.|++++|......... ..++.+....
T Consensus 200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------~~~~~~~~~~ 268 (455)
T 3v47_A 200 LGWEKCGNPFKNTSITTLDLSGNGFKESM--AKRFFDAIAGTKIQSLILSNSYNMGSSFGH---------TNFKDPDNFT 268 (455)
T ss_dssp TTHHHHCCTTTTCEEEEEECTTSCCCHHH--HHHHHHHTTTCCEEEEECTTCTTTSCCTTC---------CSSCCCCTTT
T ss_pred ccccccccccccceeeeEecCCCcccccc--hhhhhccccccceeeEeeccccccccccch---------hhhccCcccc
Confidence 1234579999999998665543 2334443 89999999988743211000 0111111111
Q ss_pred cCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccC
Q 037935 777 LDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDF 856 (1085)
Q Consensus 777 l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 856 (1085)
+. ....++|+.|++.++......+ ..+..+++|++|++++|.+++..+..+
T Consensus 269 ~~-------------~~~~~~L~~L~l~~n~l~~~~~----------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 269 FK-------------GLEASGVKTCDLSKSKIFALLK----------------SVFSHFTDLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp TG-------------GGTTSCCCEEECCSSCCCEECT----------------TTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cc-------------cccccCceEEEecCccccccch----------------hhcccCCCCCEEECCCCcccccChhHh
Confidence 11 1124678888888875544333 123558999999999999998887777
Q ss_pred CcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCC
Q 037935 857 PQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHD 936 (1085)
Q Consensus 857 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~ 936 (1085)
.. +++|++|++++|.++.+++..+..+++|+.|++++|.++.+.+ ..+..+++|+.|++++
T Consensus 320 ~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~----------- 380 (455)
T 3v47_A 320 WG--LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD------QSFLGLPNLKELALDT----------- 380 (455)
T ss_dssp TT--CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCS-----------
T ss_pred cC--cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh------hhccccccccEEECCC-----------
Confidence 66 8999999999999999988888999999999999999877643 2233344455555544
Q ss_pred CchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEecccc
Q 037935 937 SKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACK 981 (1085)
Q Consensus 937 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~ 981 (1085)
| ++..+++..+..+++|++|++++|+
T Consensus 381 ------------------N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 381 ------------------N-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp ------------------S-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------------C-ccccCCHhHhccCCcccEEEccCCC
Confidence 3 3444444445667777777777654
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=2.9e-25 Score=265.84 Aligned_cols=438 Identities=17% Similarity=0.100 Sum_probs=280.6
Q ss_pred EecCccccCCCccccccceEEEeeccCcccccc--cCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCccc
Q 037935 477 VRNDAVWEWPDGDALKKCYAISLLNSSIHEVSL--EFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLF 554 (1085)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~ 554 (1085)
..+..+...|. ..++++++|++++|.+..++. ...+++|++|++++|. +..++++.|.++++|++|+|++|.++
T Consensus 38 ls~~~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 38 YSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp CTTSCCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCCCCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC---CCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 34445555443 345789999999999998874 3489999999999997 77787778999999999999999999
Q ss_pred CCchhhhccccccEEeccCcccccccch-hhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEe
Q 037935 555 SLPSSIGQLTKLRMLDLTDCLQLKFIVP-NILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDV 633 (1085)
Q Consensus 555 ~lp~~i~~L~~L~~L~Ls~~~~l~~lp~-~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 633 (1085)
.+|.. .+++|++|++++| .++.+|. ..|+++++|++|++++|.+. ...+..+.++ +|+.|++++
T Consensus 114 ~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~-----------~~~~~~l~~L-~L~~L~L~~ 178 (562)
T 3a79_B 114 NISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFR-----------QLDLLPVAHL-HLSCILLDL 178 (562)
T ss_dssp EECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCC-----------TTTTGGGTTS-CEEEEEEEE
T ss_pred ccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccc-----------cCchhhhhhc-eeeEEEeec
Confidence 99976 8999999999999 8988762 44799999999999999883 2233334444 449999999
Q ss_pred ccC--CCC-CCcc-cccccceeeEEecCCCcccccccccccccccccccceeehh--------------hhhhccccccc
Q 037935 634 EDD--SIL-PDGL-FTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCI--------------VMALELNAINV 695 (1085)
Q Consensus 634 ~~~--~~~-~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~--------------~~~~~L~~l~L 695 (1085)
|.+ ... |..+ .+. .+.+.+.......... ..........+++.+.+... .....|+.+.+
T Consensus 179 n~l~~~~~~~~~l~~l~-~~~l~l~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 179 VSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSV-QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp SSCCCCSSSCCEEEECC-EEEEEEEECSSSCCCC-CCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ccccccccCcccccccC-cceEEEEecCccchhh-hhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 987 333 2222 111 1233332111111000 00000111122333322221 11222333333
Q ss_pred ccccccC----CCCCcccccccccEEEEcCCCCCccccchhhH----hhcccccEEEeccccchHHHhccCCcccccccc
Q 037935 696 DEIWHYN----QLPAMVPCFQSLTRLIVWGCDKLKYIFSASTI----QSLEQLQHLEIRLCKSLQEIISENRTDQVTAYF 767 (1085)
Q Consensus 696 ~~~~~~~----~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l----~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 767 (1085)
..+.... ..+.++ ..++|++|++++|...+.+|.. .+ ..++.|+.+++..+.. .++... .....
T Consensus 257 ~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~-~~~~~~~~L~~L~~~~~~~~~~--~~p~~~----~~~~~ 328 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDRE-EFTYSETALKSLMIEHVKNQVF--LFSKEA----LYSVF 328 (562)
T ss_dssp EEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCC-CCCCCSCSCCEEEEEEEEECCC--SSCHHH----HHHHH
T ss_pred cCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccch-hhhcccccchheehhhccccee--ecChhh----hhhhh
Confidence 3322211 111111 2247888888887655454321 11 3444444444444431 110000 00000
Q ss_pred cCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCC
Q 037935 768 VFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKD 847 (1085)
Q Consensus 768 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~ 847 (1085)
..++|+.|+++++.- .... ....+++|+.|+++++..-...+ ..+..+++|++|++++|.
T Consensus 329 ~~~~L~~L~l~~n~~-~~~~---~~~~l~~L~~L~l~~n~l~~~~~----------------~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 329 AEMNIKMLSISDTPF-IHMV---CPPSPSSFTFLNFTQNVFTDSVF----------------QGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp HTCCCSEEEEESSCC-CCCC---CCSSCCCCCEEECCSSCCCTTTT----------------TTCCSCSSCCEEECCSSC
T ss_pred ccCcceEEEccCCCc-cccc---CccCCCCceEEECCCCccccchh----------------hhhcccCCCCEEECCCCC
Confidence 125688888887642 2111 12467889999988875433222 123558999999999999
Q ss_pred ceeeec--ccCCcCccCCceEEEecCCcccc-cchhHHhhccccceEEeecccccEEEecCCccccccccc-cccceecc
Q 037935 848 ITMILQ--DDFPQHLFGSLKQLRVGDDDLAC-FPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKL-ALIKRLNL 923 (1085)
Q Consensus 848 l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l-~~L~~L~l 923 (1085)
++.+.. ..+.. +++|++|++++|.++. +|...+..+++|+.|++++|.++...+ ..+ ++|+.|++
T Consensus 389 l~~~~~~~~~~~~--l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~~l~~~L~~L~L 457 (562)
T 3a79_B 389 LKNFFKVALMTKN--MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---------RCLPPKVKVLDL 457 (562)
T ss_dssp CCBTTHHHHTTTT--CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG---------SSCCTTCSEEEC
T ss_pred cCCcccchhhhcC--CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh---------hhhcCcCCEEEC
Confidence 887542 23443 7999999999999988 887778889999999999999754321 123 58999999
Q ss_pred CCcccccccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEecccc
Q 037935 924 TRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACK 981 (1085)
Q Consensus 924 ~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~ 981 (1085)
++ +.++.++.... .+++|+.|++++| ++..+++..+..+++|+.|++++++
T Consensus 458 ~~-N~l~~ip~~~~-----~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 458 HN-NRIMSIPKDVT-----HLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CS-SCCCCCCTTTT-----SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CC-CcCcccChhhc-----CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 99 47887766432 4789999999998 6777766558889999999999865
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.5e-24 Score=252.53 Aligned_cols=315 Identities=19% Similarity=0.227 Sum_probs=194.9
Q ss_pred eEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccccEEeccC
Q 037935 495 YAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDLTD 573 (1085)
Q Consensus 495 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~ 573 (1085)
+.+...++.+..+|..+ .+++++|++++|. +..++...|.++++|++|+|++|.++.+ |..|+++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNR---IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSC---CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCc---cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45666777788888765 3689999999887 6777777789999999999999999886 67899999999999999
Q ss_pred cccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcccccccceeeE
Q 037935 574 CLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLERFDI 653 (1085)
Q Consensus 574 ~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 653 (1085)
| .++.+|.+.|+++++|++|++++|.+. ...+..+.++++|++|++++|.+..++..
T Consensus 90 n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------- 146 (477)
T 2id5_A 90 N-RLKLIPLGVFTGLSNLTKLDISENKIV-----------ILLDYMFQDLYNLKSLEVGDNDLVYISHR----------- 146 (477)
T ss_dssp S-CCCSCCTTSSTTCTTCCEEECTTSCCC-----------EECTTTTTTCTTCCEEEECCTTCCEECTT-----------
T ss_pred C-cCCccCcccccCCCCCCEEECCCCccc-----------cCChhHccccccCCEEECCCCccceeChh-----------
Confidence 9 899999887889999999999999873 33345578889999999988877654332
Q ss_pred EecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchhh
Q 037935 654 SIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSAST 733 (1085)
Q Consensus 654 ~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~ 733 (1085)
.+..+++|+.|++++|. +..+ +...
T Consensus 147 -----------------------------------------------------~~~~l~~L~~L~l~~n~-l~~~-~~~~ 171 (477)
T 2id5_A 147 -----------------------------------------------------AFSGLNSLEQLTLEKCN-LTSI-PTEA 171 (477)
T ss_dssp -----------------------------------------------------SSTTCTTCCEEEEESCC-CSSC-CHHH
T ss_pred -----------------------------------------------------hccCCCCCCEEECCCCc-Cccc-ChhH
Confidence 22334455555555542 2222 2233
Q ss_pred HhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCccccc
Q 037935 734 IQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 813 (1085)
Q Consensus 734 l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~ 813 (1085)
+..+++|+.|++++|. +..+... ....+++|+.|++++++.+..+.... ...++|++|++.+|. ++..+
T Consensus 172 l~~l~~L~~L~l~~n~-i~~~~~~-------~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~-l~~~~ 240 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLN-INAIRDY-------SFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCN-LTAVP 240 (477)
T ss_dssp HTTCTTCCEEEEESCC-CCEECTT-------CSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSC-CCSCC
T ss_pred hcccCCCcEEeCCCCc-CcEeChh-------hcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCc-ccccC
Confidence 4555555555555544 1111110 11134455555555544444333221 122355555555552 22111
Q ss_pred CCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEe
Q 037935 814 NDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYL 893 (1085)
Q Consensus 814 ~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 893 (1085)
...+..+++|+.|++++|.++.+.+..+.. +++|+.|++++|+++.+++..+..+++|+.|++
T Consensus 241 ---------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 241 ---------------YLAVRHLVYLRFLNLSYNPISTIEGSMLHE--LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp ---------------HHHHTTCTTCCEEECCSSCCCEECTTSCTT--CTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred ---------------HHHhcCccccCeeECCCCcCCccChhhccc--cccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 011234566666666666666555544443 566666666666666665555566666666666
Q ss_pred ecccccEEEecCCccccccccccccceeccCC
Q 037935 894 SDCSYEVVFSNEGYLETHARKLALIKRLNLTR 925 (1085)
Q Consensus 894 ~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 925 (1085)
++|.++.++ ...+..+++|+.|++++
T Consensus 304 ~~N~l~~~~------~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 304 SGNQLTTLE------ESVFHSVGNLETLILDS 329 (477)
T ss_dssp CSSCCSCCC------GGGBSCGGGCCEEECCS
T ss_pred CCCcCceeC------HhHcCCCcccCEEEccC
Confidence 666655432 22334455666666655
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=8.9e-25 Score=251.81 Aligned_cols=275 Identities=21% Similarity=0.169 Sum_probs=163.9
Q ss_pred CCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCcc
Q 037935 704 LPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPEL 783 (1085)
Q Consensus 704 ~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 783 (1085)
+| .+..+++|++|++++|. +..+|. ..++|++|++++|. +..++ ....+++|+.|+++++. +
T Consensus 146 lp-~~~~l~~L~~L~l~~N~-l~~lp~-----~~~~L~~L~L~~n~-l~~l~---------~~~~l~~L~~L~l~~N~-l 207 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNS-LKKLPD-----LPPSLEFIAAGNNQ-LEELP---------ELQNLPFLTAIYADNNS-L 207 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC-CSSCC---------CCTTCTTCCEEECCSSC-C
T ss_pred Cc-ccCCCCCCCEEECCCCc-CcccCC-----CcccccEEECcCCc-CCcCc---------cccCCCCCCEEECCCCc-C
Confidence 55 37788899999999874 444533 23689999999886 33332 12358899999998853 3
Q ss_pred ccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCC
Q 037935 784 RCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGS 863 (1085)
Q Consensus 784 ~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 863 (1085)
..+ +...++|++|++.+|. +..+|. +..+++|++|++++|.++.++. .+++
T Consensus 208 ~~l-----~~~~~~L~~L~l~~n~-l~~lp~-----------------~~~l~~L~~L~l~~N~l~~l~~------~~~~ 258 (454)
T 1jl5_A 208 KKL-----PDLPLSLESIVAGNNI-LEELPE-----------------LQNLPFLTTIYADNNLLKTLPD------LPPS 258 (454)
T ss_dssp SSC-----CCCCTTCCEEECCSSC-CSSCCC-----------------CTTCTTCCEEECCSSCCSSCCS------CCTT
T ss_pred CcC-----CCCcCcccEEECcCCc-CCcccc-----------------cCCCCCCCEEECCCCcCCcccc------cccc
Confidence 332 2234689999998883 334331 2458999999999999876542 1588
Q ss_pred ceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhH
Q 037935 864 LKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFI 943 (1085)
Q Consensus 864 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~ 943 (1085)
|++|++++|.++.+|. .+++|+.|++++|.++.++.. .++|+.|++++ +.++.++. .
T Consensus 259 L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~l~~~----------~~~L~~L~l~~-N~l~~i~~--------~ 315 (454)
T 1jl5_A 259 LEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLSEL----------PPNLYYLNASS-NEIRSLCD--------L 315 (454)
T ss_dssp CCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEESCC----------CTTCCEEECCS-SCCSEECC--------C
T ss_pred cCEEECCCCcccccCc----ccCcCCEEECcCCccCcccCc----------CCcCCEEECcC-CcCCcccC--------C
Confidence 9999999999998874 358999999999998875321 25799999988 56666543 2
Q ss_pred hhhhceeeeeccccccccCCCCcccccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccc--cccccc-
Q 037935 944 FQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVII--SDEDET- 1020 (1085)
Q Consensus 944 l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~--~~~~~~- 1020 (1085)
+++|+.|++++| ++..++.. +++|++|++++| +++.++. .+++|++|++++|. ++.++. .....+
T Consensus 316 ~~~L~~L~Ls~N-~l~~lp~~----~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~ 383 (454)
T 1jl5_A 316 PPSLEELNVSNN-KLIELPAL----PPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPDIPESVEDLR 383 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCCCCTTCCEEE
T ss_pred cCcCCEEECCCC-cccccccc----CCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC-CCcCCCChHHHHhhh
Confidence 368999999987 56665332 578999999886 5777633 47899999999965 444321 111010
Q ss_pred -----cccccceeeccccccccccccccceecCCCccccCCCcCceeeccCCC
Q 037935 1021 -----ANLKEEIVFSKLSALSLFDLDSLTSFSSGNYAFKLPSLQDLWVIGCPK 1068 (1085)
Q Consensus 1021 -----~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 1068 (1085)
+.++. .+++|+.|++++++ ++.++.- + ++|+.|.+.+|.-
T Consensus 384 ~n~~~~~i~~--~~~~L~~L~ls~N~-l~~~~~i--P---~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 384 MNSHLAEVPE--LPQNLKQLHVETNP-LREFPDI--P---ESVEDLRMNSERV 428 (454)
T ss_dssp CCC--------------------------------------------------
T ss_pred hccccccccc--ccCcCCEEECCCCc-CCccccc--h---hhHhheeCcCccc
Confidence 11111 13678888887754 4433221 2 3567777777643
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.4e-24 Score=250.25 Aligned_cols=391 Identities=18% Similarity=0.121 Sum_probs=209.8
Q ss_pred cccceEEEeeccCcccccccC-CCCCcceeeeccCCCccccccChhhhcCCCcc-------------eEEEecCCcccCC
Q 037935 491 LKKCYAISLLNSSIHEVSLEF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKL-------------RVVDLTRVRLFSL 556 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~L-------------r~L~Ls~~~i~~l 556 (1085)
...++.++++++.+..+|..+ .+++|+.|++++|.. ...+|.. ++++++| ++|++++|.++.+
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~--~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEW--ERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ------------------------CCHHHHHHHHHHH--HHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcc--cccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 456888889999888888765 888999999988763 3356654 6666664 8999999998888
Q ss_pred chhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcC-CCCcEEEEEecc
Q 037935 557 PSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHL-QRLTTLEIDVED 635 (1085)
Q Consensus 557 p~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~ 635 (1085)
|.. .++|++|++++| .++.+|.. +.+|++|++++|.+.. +..+ ++|++|++++|.
T Consensus 87 p~~---~~~L~~L~l~~n-~l~~lp~~----~~~L~~L~l~~n~l~~----------------l~~~~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 87 PEL---PPHLESLVASCN-SLTELPEL----PQSLKSLLVDNNNLKA----------------LSDLPPLLEYLGVSNNQ 142 (454)
T ss_dssp CSC---CTTCSEEECCSS-CCSSCCCC----CTTCCEEECCSSCCSC----------------CCSCCTTCCEEECCSSC
T ss_pred CCC---cCCCCEEEccCC-cCCccccc----cCCCcEEECCCCccCc----------------ccCCCCCCCEEECcCCC
Confidence 862 478999999998 88888752 4789999999988732 1112 688999999998
Q ss_pred CCCCCCcccccccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCccccccccc
Q 037935 636 DSILPDGLFTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLT 715 (1085)
Q Consensus 636 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~ 715 (1085)
+..+|.-..+++|+.|+++.+. .. .+|.. ..+|+
T Consensus 143 l~~lp~~~~l~~L~~L~l~~N~------------------------------------------l~-~lp~~---~~~L~ 176 (454)
T 1jl5_A 143 LEKLPELQNSSFLKIIDVDNNS------------------------------------------LK-KLPDL---PPSLE 176 (454)
T ss_dssp CSSCCCCTTCTTCCEEECCSSC------------------------------------------CS-CCCCC---CTTCC
T ss_pred CCCCcccCCCCCCCEEECCCCc------------------------------------------Cc-ccCCC---ccccc
Confidence 8888743377778887775321 00 13332 23777
Q ss_pred EEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCC
Q 037935 716 RLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEW 795 (1085)
Q Consensus 716 ~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 795 (1085)
+|++++|. +..++ .++.+++|+.|++++|. +..++. .+++|++|+++++ .+..++ . ...+
T Consensus 177 ~L~L~~n~-l~~l~---~~~~l~~L~~L~l~~N~-l~~l~~-----------~~~~L~~L~l~~n-~l~~lp-~--~~~l 236 (454)
T 1jl5_A 177 FIAAGNNQ-LEELP---ELQNLPFLTAIYADNNS-LKKLPD-----------LPLSLESIVAGNN-ILEELP-E--LQNL 236 (454)
T ss_dssp EEECCSSC-CSSCC---CCTTCTTCCEEECCSSC-CSSCCC-----------CCTTCCEEECCSS-CCSSCC-C--CTTC
T ss_pred EEECcCCc-CCcCc---cccCCCCCCEEECCCCc-CCcCCC-----------CcCcccEEECcCC-cCCccc-c--cCCC
Confidence 77777763 34443 26777777777777765 221110 2357777777775 344332 1 3456
Q ss_pred CcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCccc
Q 037935 796 PALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLA 875 (1085)
Q Consensus 796 ~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 875 (1085)
++|+.|++.++. +..+| ..+++|+.|++++|.+++++.. +++|++|++++|.++
T Consensus 237 ~~L~~L~l~~N~-l~~l~-------------------~~~~~L~~L~l~~N~l~~l~~~------~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 237 PFLTTIYADNNL-LKTLP-------------------DLPPSLEALNVRDNYLTDLPEL------PQSLTFLDVSENIFS 290 (454)
T ss_dssp TTCCEEECCSSC-CSSCC-------------------SCCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCS
T ss_pred CCCCEEECCCCc-CCccc-------------------ccccccCEEECCCCcccccCcc------cCcCCEEECcCCccC
Confidence 777777777663 22222 1246777777777776654321 367777777777777
Q ss_pred ccchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeecc
Q 037935 876 CFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHC 955 (1085)
Q Consensus 876 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c 955 (1085)
.++. ..++|+.|++++|.++.+... .++|+.|++++ +.++.++. .+++|+.|++++|
T Consensus 291 ~l~~----~~~~L~~L~l~~N~l~~i~~~----------~~~L~~L~Ls~-N~l~~lp~--------~~~~L~~L~L~~N 347 (454)
T 1jl5_A 291 GLSE----LPPNLYYLNASSNEIRSLCDL----------PPSLEELNVSN-NKLIELPA--------LPPRLERLIASFN 347 (454)
T ss_dssp EESC----CCTTCCEEECCSSCCSEECCC----------CTTCCEEECCS-SCCSCCCC--------CCTTCCEEECCSS
T ss_pred cccC----cCCcCCEEECcCCcCCcccCC----------cCcCCEEECCC-Cccccccc--------cCCcCCEEECCCC
Confidence 6652 136777777777776654310 13577777777 45655543 2467777777776
Q ss_pred ccccccCCCCcccccCccEEEeccccCccccc-chhhhhhc-------------ccccEEEEcCCccccccccccccccc
Q 037935 956 QNLLSLLPSSSVSFRNLTRLETFACKKLMNLL-TSSKAKSL-------------ERLVSLRIFGCPAMTEVIISDEDETA 1021 (1085)
Q Consensus 956 ~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~-~~~~~~~l-------------~~L~~L~i~~c~~l~~l~~~~~~~~~ 1021 (1085)
.+..++. .+++|++|++++| ++..++ .+..+..+ ++|++|++++|+ ++.++.
T Consensus 348 -~l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~------- 413 (454)
T 1jl5_A 348 -HLAEVPE----LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPD------- 413 (454)
T ss_dssp -CCSCCCC----CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred -ccccccc----hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCcccc-------
Confidence 4555433 3567777777764 354421 12223333 789999999965 443311
Q ss_pred ccccceeecccccccccccccc
Q 037935 1022 NLKEEIVFSKLSALSLFDLDSL 1043 (1085)
Q Consensus 1022 ~~~~~~~~~~L~~L~l~~c~~L 1043 (1085)
.+++|+.|.+.+|.--
T Consensus 414 ------iP~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 414 ------IPESVEDLRMNSERVV 429 (454)
T ss_dssp ----------------------
T ss_pred ------chhhHhheeCcCcccC
Confidence 1467888888877543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=6.6e-24 Score=241.65 Aligned_cols=311 Identities=14% Similarity=0.191 Sum_probs=196.2
Q ss_pred CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEeccCcccccccchhhhhccc
Q 037935 511 FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFT 589 (1085)
Q Consensus 511 ~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~ 589 (1085)
..+++++.|.+.++. ...+|..+|.++++|++|++++|.++.+| ..++++++|++|++++| .++.+|+..|++++
T Consensus 42 ~~l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVP 117 (390)
T ss_dssp GGGCCCSEEEEESCE---ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred cccCCceEEEecCCc---hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCC
Confidence 356788888887776 67778777888888888888888887765 47788888888888888 78888777678888
Q ss_pred cCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcccccccceeeEEecCCCcccccccccc
Q 037935 590 RLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLERFDISIGDGSFDSTKIIGND 669 (1085)
Q Consensus 590 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 669 (1085)
+|++|++++|.+... ....+.++++|++|++++|.+..++.
T Consensus 118 ~L~~L~L~~n~l~~l-----------~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------------- 158 (390)
T 3o6n_A 118 LLTVLVLERNDLSSL-----------PRGIFHNTPKLTTLSMSNNNLERIED---------------------------- 158 (390)
T ss_dssp TCCEEECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCCBCCT----------------------------
T ss_pred CCCEEECCCCccCcC-----------CHHHhcCCCCCcEEECCCCccCccCh----------------------------
Confidence 888888888877321 11225677778888877776654332
Q ss_pred cccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEecccc
Q 037935 670 WFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCK 749 (1085)
Q Consensus 670 ~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~ 749 (1085)
..+..+++|++|++++|. +..+ + ++.+++|+.|++++|.
T Consensus 159 ------------------------------------~~~~~l~~L~~L~l~~n~-l~~~-~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 159 ------------------------------------DTFQATTSLQNLQLSSNR-LTHV-D---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp ------------------------------------TTTSSCTTCCEEECCSSC-CSBC-C---GGGCTTCSEEECCSSC
T ss_pred ------------------------------------hhccCCCCCCEEECCCCc-CCcc-c---cccccccceeeccccc
Confidence 234455677777776653 3332 1 4566777777776654
Q ss_pred chHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcc
Q 037935 750 SLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLF 829 (1085)
Q Consensus 750 ~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~ 829 (1085)
+..+ ...++|+.|++++ +.. ...+
T Consensus 198 -l~~~------------~~~~~L~~L~l~~--------------------------n~l-~~~~---------------- 221 (390)
T 3o6n_A 198 -LSTL------------AIPIAVEELDASH--------------------------NSI-NVVR---------------- 221 (390)
T ss_dssp -CSEE------------ECCSSCSEEECCS--------------------------SCC-CEEE----------------
T ss_pred -cccc------------CCCCcceEEECCC--------------------------Cee-eecc----------------
Confidence 1100 0133445555444 211 1111
Q ss_pred cccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCccc
Q 037935 830 SFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLE 909 (1085)
Q Consensus 830 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 909 (1085)
...+++|+.|++++|.+++.. .+.. +++|++|++++|.++.+++..+..+++|+.|++++|.++.++..
T Consensus 222 --~~~~~~L~~L~l~~n~l~~~~--~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----- 290 (390)
T 3o6n_A 222 --GPVNVELTILKLQHNNLTDTA--WLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY----- 290 (390)
T ss_dssp --CCCCSSCCEEECCSSCCCCCG--GGGG--CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-----
T ss_pred --ccccccccEEECCCCCCcccH--HHcC--CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-----
Confidence 011356666666666665532 2222 56677777777777666556666777777777777776665321
Q ss_pred cccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEeccccCccc
Q 037935 910 THARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMN 985 (1085)
Q Consensus 910 ~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~ 985 (1085)
...+++|+.|+++++ .++.++.. ...+++|+.|++++| .+..+. +..+++|++|++++|+ +..
T Consensus 291 --~~~l~~L~~L~L~~n-~l~~~~~~-----~~~l~~L~~L~L~~N-~i~~~~---~~~~~~L~~L~l~~N~-~~~ 353 (390)
T 3o6n_A 291 --GQPIPTLKVLDLSHN-HLLHVERN-----QPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNLTLSHND-WDC 353 (390)
T ss_dssp --SSCCTTCCEEECCSS-CCCCCGGG-----HHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEEECCSSC-EEH
T ss_pred --cCCCCCCCEEECCCC-cceecCcc-----ccccCcCCEEECCCC-ccceeC---chhhccCCEEEcCCCC-ccc
Confidence 234566777777773 55555431 235788888888887 455442 5667889999998854 443
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1e-23 Score=243.19 Aligned_cols=130 Identities=19% Similarity=0.116 Sum_probs=71.9
Q ss_pred CCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccc----------cceEEeecccccEEEec
Q 037935 835 LPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHN----------LEFLYLSDCSYEVVFSN 904 (1085)
Q Consensus 835 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~----------L~~L~l~~~~l~~~~~~ 904 (1085)
+++|++|++++|.+++++ +.. +++|+.|++++|.++.++. ..+++ |+.|++++|.+...++
T Consensus 211 l~~L~~L~Ls~N~l~~ip---~~~--l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTEID---VTP--LTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp CTTCSEEECCSSCCSCCC---CTT--CTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-
T ss_pred CCCCCEEECcCCcccccC---ccc--cCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc-
Confidence 455555555555554432 211 4555555555555555442 22333 3444555555222222
Q ss_pred CCccccccccccccceeccCCcccccccccCCCchhhhHhhhhceeeeeccccccccCCCCcccccCccEEEeccccCcc
Q 037935 905 EGYLETHARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLM 984 (1085)
Q Consensus 905 ~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~ 984 (1085)
...+++|+.|++++|+.+..++. ..++|+.|++++ +++|++|++++| +++
T Consensus 282 -------~~~l~~L~~L~Ls~n~~l~~l~~--------~~~~L~~L~l~~--------------~~~L~~L~L~~N-~l~ 331 (457)
T 3bz5_A 282 -------AEGCRKIKELDVTHNTQLYLLDC--------QAAGITELDLSQ--------------NPKLVYLYLNNT-ELT 331 (457)
T ss_dssp -------CTTCTTCCCCCCTTCTTCCEEEC--------TTCCCSCCCCTT--------------CTTCCEEECTTC-CCS
T ss_pred -------ccccccCCEEECCCCcccceecc--------CCCcceEechhh--------------cccCCEEECCCC-ccc
Confidence 12456677777777766665543 124444444433 367888888774 577
Q ss_pred cccchhhhhhcccccEEEEcCCc
Q 037935 985 NLLTSSKAKSLERLVSLRIFGCP 1007 (1085)
Q Consensus 985 ~l~~~~~~~~l~~L~~L~i~~c~ 1007 (1085)
.+ .+..+++|+.|+++++.
T Consensus 332 ~l----~l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 332 EL----DVSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CC----CCTTCTTCSEEECCSSC
T ss_pred cc----ccccCCcCcEEECCCCC
Confidence 65 16778899999998853
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=5.3e-23 Score=230.40 Aligned_cols=302 Identities=17% Similarity=0.208 Sum_probs=196.5
Q ss_pred ccccceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEE
Q 037935 490 ALKKCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRML 569 (1085)
Q Consensus 490 ~~~~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L 569 (1085)
.++++++|++.++.+..++....+++|++|++.+|. +..++. |.++++|++|++++|.++.+| .+.++++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~---i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ---ITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCc---cccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 456788899988888888776678889999998886 566665 788889999999998888876 58888999999
Q ss_pred eccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcccccccc
Q 037935 570 DLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLE 649 (1085)
Q Consensus 570 ~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~ 649 (1085)
++++| .+..+|. +.++++|++|++++|... ..+..+..+++|++|+++++.+..++..
T Consensus 116 ~l~~n-~i~~~~~--~~~l~~L~~L~l~~n~~~------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~------- 173 (347)
T 4fmz_A 116 YLNED-NISDISP--LANLTKMYSLNLGANHNL------------SDLSPLSNMTGLNYLTVTESKVKDVTPI------- 173 (347)
T ss_dssp ECTTS-CCCCCGG--GTTCTTCCEEECTTCTTC------------CCCGGGTTCTTCCEEECCSSCCCCCGGG-------
T ss_pred ECcCC-cccCchh--hccCCceeEEECCCCCCc------------ccccchhhCCCCcEEEecCCCcCCchhh-------
Confidence 99988 8888877 588889999999888652 1233477888888888888776654432
Q ss_pred eeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCcccc
Q 037935 650 RFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIF 729 (1085)
Q Consensus 650 ~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~ 729 (1085)
..+++|++|++++|. +..++
T Consensus 174 -----------------------------------------------------------~~l~~L~~L~l~~n~-l~~~~ 193 (347)
T 4fmz_A 174 -----------------------------------------------------------ANLTDLYSLSLNYNQ-IEDIS 193 (347)
T ss_dssp -----------------------------------------------------------GGCTTCSEEECTTSC-CCCCG
T ss_pred -----------------------------------------------------------ccCCCCCEEEccCCc-ccccc
Confidence 233455555555442 22221
Q ss_pred chhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCc
Q 037935 730 SASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKI 809 (1085)
Q Consensus 730 ~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L 809 (1085)
+ +..+++|+.|++++|.. ..+. ....+++|++|+++++. +..... ...+++|++|++.+|..
T Consensus 194 ~---~~~l~~L~~L~l~~n~l-~~~~---------~~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l- 255 (347)
T 4fmz_A 194 P---LASLTSLHYFTAYVNQI-TDIT---------PVANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTNQI- 255 (347)
T ss_dssp G---GGGCTTCCEEECCSSCC-CCCG---------GGGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCC-
T ss_pred c---ccCCCccceeecccCCC-CCCc---------hhhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCCcc-
Confidence 1 44555555555555431 1110 01234455555555432 111111 23455666666665532
Q ss_pred ccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccc
Q 037935 810 TLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLE 889 (1085)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 889 (1085)
...+ ....+++|++|++++|.+++.. .+.. +++|+.|++++|.++..++..+..+++|+
T Consensus 256 ~~~~-----------------~~~~l~~L~~L~l~~n~l~~~~--~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 256 SDIN-----------------AVKDLTKLKMLNVGSNQISDIS--VLNN--LSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp CCCG-----------------GGTTCTTCCEEECCSSCCCCCG--GGGG--CTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred CCCh-----------------hHhcCCCcCEEEccCCccCCCh--hhcC--CCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 2111 1234678888888888877652 2332 67888888888888877777777888888
Q ss_pred eEEeecccccEEEecCCccccccccccccceeccCCc
Q 037935 890 FLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRL 926 (1085)
Q Consensus 890 ~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c 926 (1085)
.|++++|+++.+++ +..+++|+.|+++++
T Consensus 315 ~L~L~~n~l~~~~~--------~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--------LASLSKMDSADFANQ 343 (347)
T ss_dssp EEECCSSSCCCCGG--------GGGCTTCSEESSSCC
T ss_pred EEEccCCccccccC--------hhhhhccceeehhhh
Confidence 88888888766532 344666777777663
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=7.3e-24 Score=237.42 Aligned_cols=81 Identities=21% Similarity=0.305 Sum_probs=39.3
Q ss_pred CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccC
Q 037935 512 ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRL 591 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L 591 (1085)
.+++|++|.+.++. ...++. |..+++|++|++++|.++.+|. +.++++|++|++++| .++.+|. +.++++|
T Consensus 42 ~l~~L~~L~l~~~~---i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L 112 (347)
T 4fmz_A 42 ELESITKLVVAGEK---VASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISA--LQNLTNL 112 (347)
T ss_dssp HHTTCSEEECCSSC---CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GTTCTTC
T ss_pred hcccccEEEEeCCc---cccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchH--HcCCCcC
Confidence 34455555555444 333332 4445555555555555555443 455555555555555 4444432 3455555
Q ss_pred CEEeccCCCc
Q 037935 592 EELYMGSCSI 601 (1085)
Q Consensus 592 ~~L~L~~~~~ 601 (1085)
++|++++|.+
T Consensus 113 ~~L~l~~n~i 122 (347)
T 4fmz_A 113 RELYLNEDNI 122 (347)
T ss_dssp SEEECTTSCC
T ss_pred CEEECcCCcc
Confidence 5555555444
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.3e-23 Score=252.60 Aligned_cols=115 Identities=9% Similarity=0.207 Sum_probs=90.8
Q ss_pred CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEeccCcccccccchhhhhccc
Q 037935 511 FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFT 589 (1085)
Q Consensus 511 ~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~ 589 (1085)
..+++++.|.+.++. ...+|..+|.++++|++|+|++|.++.+| ..|+.+++|++|+|++| .++.+|+..|++++
T Consensus 48 l~l~~l~~l~l~~~~---l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 48 ITLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVP 123 (597)
T ss_dssp GGGCCCSEEEESSCE---ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred ccCCCceEEEeeCCC---CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCC
Confidence 456788888888876 67788888888888999999988888865 47888889999999988 88888887778888
Q ss_pred cCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCC
Q 037935 590 RLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILP 640 (1085)
Q Consensus 590 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 640 (1085)
+|++|++++|.+... .+..++++++|++|++++|.+..++
T Consensus 124 ~L~~L~L~~n~l~~l-----------~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 124 LLTVLVLERNDLSSL-----------PRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp TCCEEECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCEEEeeCCCCCCC-----------CHHHhccCCCCCEEEeeCCcCCCCC
Confidence 899998888887422 2233577888888888888766544
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=244.74 Aligned_cols=310 Identities=17% Similarity=0.192 Sum_probs=225.5
Q ss_pred ecCccccCCCccccccceEEEeeccCcccccc--cCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccC
Q 037935 478 RNDAVWEWPDGDALKKCYAISLLNSSIHEVSL--EFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFS 555 (1085)
Q Consensus 478 ~~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~ 555 (1085)
.+..+...|. ..+..++.|++++|.+..++. ...+++|++|++.+|. +..+++..|.++++|++|+|++|.++.
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 19 HRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI---VSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp CSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc---cCEeChhhhhCCccCCEEECCCCcCCc
Confidence 3444444443 456789999999999998854 3389999999999997 677766779999999999999999999
Q ss_pred Cch-hhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEec
Q 037935 556 LPS-SIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVE 634 (1085)
Q Consensus 556 lp~-~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 634 (1085)
+|. .++++++|++|+|++| .+..+++..|.++++|++|++++|.+. ...+..+..+++|+.|++++|
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLV-----------YISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCC-----------EECTTSSTTCTTCCEEEEESC
T ss_pred cCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccc-----------eeChhhccCCCCCCEEECCCC
Confidence 985 4799999999999999 899888777899999999999999884 334456889999999999999
Q ss_pred cCCCCCCcc--cccccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccc
Q 037935 635 DDSILPDGL--FTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQ 712 (1085)
Q Consensus 635 ~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~ 712 (1085)
.+..++... .+++|+.|++..+. .....+..+..++
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~------------------------------------------i~~~~~~~~~~l~ 200 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLN------------------------------------------INAIRDYSFKRLY 200 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCC------------------------------------------CCEECTTCSCSCT
T ss_pred cCcccChhHhcccCCCcEEeCCCCc------------------------------------------CcEeChhhcccCc
Confidence 988777543 56666666664321 0011223345566
Q ss_pred cccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcc
Q 037935 713 SLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHT 792 (1085)
Q Consensus 713 ~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 792 (1085)
+|+.|++++|+.+..+++. .....+|+.|++++|. +..++. ...
T Consensus 201 ~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~-l~~~~~---------------------------------~~~ 244 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPN--CLYGLNLTSLSITHCN-LTAVPY---------------------------------LAV 244 (477)
T ss_dssp TCCEEEEECCTTCCEECTT--TTTTCCCSEEEEESSC-CCSCCH---------------------------------HHH
T ss_pred ccceeeCCCCccccccCcc--cccCccccEEECcCCc-ccccCH---------------------------------HHh
Confidence 7777777777666655331 3334466666666664 211110 001
Q ss_pred cCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCC
Q 037935 793 SEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDD 872 (1085)
Q Consensus 793 ~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n 872 (1085)
..+++|+.|+++++..- ..+. ..+..+++|++|++++|.++.+.+..|.. +++|+.|++++|
T Consensus 245 ~~l~~L~~L~Ls~n~l~-~~~~---------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N 306 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPIS-TIEG---------------SMLHELLRLQEIQLVGGQLAVVEPYAFRG--LNYLRVLNVSGN 306 (477)
T ss_dssp TTCTTCCEEECCSSCCC-EECT---------------TSCTTCTTCCEEECCSSCCSEECTTTBTT--CTTCCEEECCSS
T ss_pred cCccccCeeECCCCcCC-ccCh---------------hhccccccCCEEECCCCccceECHHHhcC--cccCCEEECCCC
Confidence 23445555555554321 1110 11245789999999999998887777765 799999999999
Q ss_pred cccccchhHHhhccccceEEeeccccc
Q 037935 873 DLACFPLDLLERFHNLEFLYLSDCSYE 899 (1085)
Q Consensus 873 ~l~~~~~~~~~~l~~L~~L~l~~~~l~ 899 (1085)
.++.++...+..+++|+.|++++|++.
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 999999888889999999999999964
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.1e-22 Score=231.44 Aligned_cols=304 Identities=17% Similarity=0.143 Sum_probs=203.3
Q ss_pred cccccceEEEeeccCcccccccC--CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhcccc
Q 037935 489 DALKKCYAISLLNSSIHEVSLEF--ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTK 565 (1085)
Q Consensus 489 ~~~~~~r~Lsl~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~ 565 (1085)
-...+++++++.++.+..+|... .+++|++|++.+|. +..++...|.++++|++|++++|.++.+| ..++++++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc---ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 34578999999999999998753 78999999999997 67788778999999999999999999975 56899999
Q ss_pred ccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcccc
Q 037935 566 LRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFT 645 (1085)
Q Consensus 566 L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l 645 (1085)
|++|++++| .++.+|..+|+++++|++|++++|.+. ...+..+..+++|++|++++|.+..++.. .+
T Consensus 119 L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l 185 (390)
T 3o6n_A 119 LTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE-----------RIEDDTFQATTSLQNLQLSSNRLTHVDLS-LI 185 (390)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTSSCTTCCEEECCSSCCSBCCGG-GC
T ss_pred CCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccC-----------ccChhhccCCCCCCEEECCCCcCCccccc-cc
Confidence 999999999 999999998899999999999999984 33345588999999999999987754311 23
Q ss_pred cccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCC
Q 037935 646 KKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKL 725 (1085)
Q Consensus 646 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l 725 (1085)
++|+.|++++|. +
T Consensus 186 ------------------------------------------------------------------~~L~~L~l~~n~-l 198 (390)
T 3o6n_A 186 ------------------------------------------------------------------PSLFHANVSYNL-L 198 (390)
T ss_dssp ------------------------------------------------------------------TTCSEEECCSSC-C
T ss_pred ------------------------------------------------------------------cccceeeccccc-c
Confidence 344444444432 2
Q ss_pred ccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeecc
Q 037935 726 KYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACN 805 (1085)
Q Consensus 726 ~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~ 805 (1085)
..+ ...++|+.|++++|. +..++ ...+++|+.|+++++. +... .....+++|++|++++
T Consensus 199 ~~~------~~~~~L~~L~l~~n~-l~~~~----------~~~~~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 199 STL------AIPIAVEELDASHNS-INVVR----------GPVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSY 257 (390)
T ss_dssp SEE------ECCSSCSEEECCSSC-CCEEE----------CCCCSSCCEEECCSSC-CCCC---GGGGGCTTCSEEECCS
T ss_pred ccc------CCCCcceEEECCCCe-eeecc----------ccccccccEEECCCCC-Cccc---HHHcCCCCccEEECCC
Confidence 211 122345555555443 11110 0123455555555431 1111 1123345555555555
Q ss_pred CCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhc
Q 037935 806 CDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERF 885 (1085)
Q Consensus 806 c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 885 (1085)
+..-...+ ..+..+++|++|++++|.++.++... . .+++|++|++++|.++.+|.. +..+
T Consensus 258 n~l~~~~~----------------~~~~~l~~L~~L~L~~n~l~~~~~~~-~--~l~~L~~L~L~~n~l~~~~~~-~~~l 317 (390)
T 3o6n_A 258 NELEKIMY----------------HPFVKMQRLERLYISNNRLVALNLYG-Q--PIPTLKVLDLSHNHLLHVERN-QPQF 317 (390)
T ss_dssp SCCCEEES----------------GGGTTCSSCCEEECCSSCCCEEECSS-S--CCTTCCEEECCSSCCCCCGGG-HHHH
T ss_pred CcCCCcCh----------------hHccccccCCEEECCCCcCcccCccc-C--CCCCCCEEECCCCcceecCcc-cccc
Confidence 53222211 11234677777777777776654322 1 267777777777777777644 4567
Q ss_pred cccceEEeecccccEEEecCCccccccccccccceeccCC
Q 037935 886 HNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTR 925 (1085)
Q Consensus 886 ~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 925 (1085)
++|+.|++++|+++.+. +..+++|+.|++++
T Consensus 318 ~~L~~L~L~~N~i~~~~---------~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 318 DRLENLYLDHNSIVTLK---------LSTHHTLKNLTLSH 348 (390)
T ss_dssp TTCSEEECCSSCCCCCC---------CCTTCCCSEEECCS
T ss_pred CcCCEEECCCCccceeC---------chhhccCCEEEcCC
Confidence 77777777777765442 23355666666665
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=3.3e-22 Score=230.55 Aligned_cols=306 Identities=17% Similarity=0.126 Sum_probs=177.8
Q ss_pred cccceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEe
Q 037935 491 LKKCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLD 570 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~ 570 (1085)
..++++|+++++.+..+|....+++|++|++++|. ...++ |..+++|++|++++|.++.+| ++++++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~---l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN---ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC---CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCc---CCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 45788888888888888765578888888888886 55554 777888888888888888876 78888888888
Q ss_pred ccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEecc-CCCCCCcccccccc
Q 037935 571 LTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVED-DSILPDGLFTKKLE 649 (1085)
Q Consensus 571 Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~~~~~l~~L~ 649 (1085)
+++| .++.+| ++++++|++|++++|.+. .. .++.+++|++|+++.|. +..+ .-..+++|+
T Consensus 113 L~~N-~l~~l~---~~~l~~L~~L~l~~N~l~-----------~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~ 173 (457)
T 3bz5_A 113 CDTN-KLTKLD---VSQNPLLTYLNCARNTLT-----------EI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLT 173 (457)
T ss_dssp CCSS-CCSCCC---CTTCTTCCEEECTTSCCS-----------CC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCC
T ss_pred CCCC-cCCeec---CCCCCcCCEEECCCCccc-----------ee---ccccCCcCCEEECCCCCccccc-ccccCCcCC
Confidence 8888 888876 588888888888888873 11 26677888888888773 3333 222566777
Q ss_pred eeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCcccc
Q 037935 650 RFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIF 729 (1085)
Q Consensus 650 ~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~ 729 (1085)
.|+++.+. +..+. +.....|+.+++..+..... .+..+++|+.|++++|.. ..+
T Consensus 174 ~L~ls~n~------------------l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l-~~i- 227 (457)
T 3bz5_A 174 TLDCSFNK------------------ITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL-TEI- 227 (457)
T ss_dssp EEECCSSC------------------CCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC-SCC-
T ss_pred EEECCCCc------------------cceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc-ccc-
Confidence 77764321 11100 11112233333332222211 133445555555555432 222
Q ss_pred chhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCc
Q 037935 730 SASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKI 809 (1085)
Q Consensus 730 ~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L 809 (1085)
| ++.+++|+.|++++|. +..++ ...+++|+.|.+++ .+|+.|++.+|..+
T Consensus 228 p---~~~l~~L~~L~l~~N~-l~~~~----------~~~l~~L~~L~l~~----------------n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 228 D---VTPLTQLTYFDCSVNP-LTELD----------VSTLSKLTTLHCIQ----------------TDLLEIDLTHNTQL 277 (457)
T ss_dssp C---CTTCTTCSEEECCSSC-CSCCC----------CTTCTTCCEEECTT----------------CCCSCCCCTTCTTC
T ss_pred C---ccccCCCCEEEeeCCc-CCCcC----------HHHCCCCCEEeccC----------------CCCCEEECCCCccC
Confidence 1 4455555555555554 11110 11244444443332 13344444444433
Q ss_pred ccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCc-eeeecc-----cCCcCccCCceEEEecCCcccccchhHHh
Q 037935 810 TLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDI-TMILQD-----DFPQHLFGSLKQLRVGDDDLACFPLDLLE 883 (1085)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l-~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 883 (1085)
..+| ...+++|+.|++++|.. ..++.. .+....+++|++|++++|+++.++ +.
T Consensus 278 ~~~~------------------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~---l~ 336 (457)
T 3bz5_A 278 IYFQ------------------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD---VS 336 (457)
T ss_dssp CEEE------------------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC---CT
T ss_pred Cccc------------------ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc---cc
Confidence 3322 23467777777777763 222210 001112456667777777766653 45
Q ss_pred hccccceEEeecccccE
Q 037935 884 RFHNLEFLYLSDCSYEV 900 (1085)
Q Consensus 884 ~l~~L~~L~l~~~~l~~ 900 (1085)
.+++|+.|++++|++++
T Consensus 337 ~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 337 HNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TCTTCSEEECCSSCCCB
T ss_pred cCCcCcEEECCCCCCCC
Confidence 66777777777776554
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2.9e-22 Score=240.89 Aligned_cols=304 Identities=17% Similarity=0.144 Sum_probs=209.3
Q ss_pred ccccceEEEeeccCcccccccC--CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCch-hhhccccc
Q 037935 490 ALKKCYAISLLNSSIHEVSLEF--ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKL 566 (1085)
Q Consensus 490 ~~~~~r~Lsl~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L 566 (1085)
....++.+++.++.+..+|... .+++|++|++.+|. +..+++..|..+++|++|+|++|.++.+|. .|+++++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 4567899999999999998753 78999999999997 677887779999999999999999999864 57999999
Q ss_pred cEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCccccc
Q 037935 567 RMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTK 646 (1085)
Q Consensus 567 ~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~ 646 (1085)
++|+|++| .++.+|+.+|+++++|++|++++|.+. ...+..+.++++|++|++++|.+..++.. .++
T Consensus 126 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~l~ 192 (597)
T 3oja_B 126 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE-----------RIEDDTFQATTSLQNLQLSSNRLTHVDLS-LIP 192 (597)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTTTCTTCCEEECTTSCCSBCCGG-GCT
T ss_pred CEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCC-----------CCChhhhhcCCcCcEEECcCCCCCCcChh-hhh
Confidence 99999999 999999998899999999999999983 33445688999999999999987755321 233
Q ss_pred ccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCc
Q 037935 647 KLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLK 726 (1085)
Q Consensus 647 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~ 726 (1085)
+|+.|++++|. +.
T Consensus 193 ------------------------------------------------------------------~L~~L~l~~n~-l~ 205 (597)
T 3oja_B 193 ------------------------------------------------------------------SLFHANVSYNL-LS 205 (597)
T ss_dssp ------------------------------------------------------------------TCSEEECCSSC-CS
T ss_pred ------------------------------------------------------------------hhhhhhcccCc-cc
Confidence 44444444431 12
Q ss_pred cccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccC
Q 037935 727 YIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNC 806 (1085)
Q Consensus 727 ~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 806 (1085)
.+ ...++|+.|++++|. +..++ ...+++|+.|+++++. +... .....+++|+.|++++|
T Consensus 206 ~l------~~~~~L~~L~ls~n~-l~~~~----------~~~~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~N 264 (597)
T 3oja_B 206 TL------AIPIAVEELDASHNS-INVVR----------GPVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYN 264 (597)
T ss_dssp EE------ECCTTCSEEECCSSC-CCEEE----------CSCCSCCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS
T ss_pred cc------cCCchhheeeccCCc-ccccc----------cccCCCCCEEECCCCC-CCCC---hhhccCCCCCEEECCCC
Confidence 11 122344555554443 11110 0123445555555432 1111 11234556666666665
Q ss_pred CCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhcc
Q 037935 807 DKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFH 886 (1085)
Q Consensus 807 ~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 886 (1085)
..-...| ..+..+++|+.|++++|.++.++... . .+++|+.|++++|.++.+|.. +..++
T Consensus 265 ~l~~~~~----------------~~~~~l~~L~~L~Ls~N~l~~l~~~~-~--~l~~L~~L~Ls~N~l~~i~~~-~~~l~ 324 (597)
T 3oja_B 265 ELEKIMY----------------HPFVKMQRLERLYISNNRLVALNLYG-Q--PIPTLKVLDLSHNHLLHVERN-QPQFD 324 (597)
T ss_dssp CCCEEES----------------GGGTTCSSCCEEECTTSCCCEEECSS-S--CCTTCCEEECCSSCCCCCGGG-HHHHT
T ss_pred ccCCCCH----------------HHhcCccCCCEEECCCCCCCCCCccc-c--cCCCCcEEECCCCCCCccCcc-cccCC
Confidence 4322222 12345788888888888877764432 2 267888888888888877754 46788
Q ss_pred ccceEEeecccccEEEecCCccccccccccccceeccCCc
Q 037935 887 NLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRL 926 (1085)
Q Consensus 887 ~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c 926 (1085)
+|+.|++++|.+..++ +..+++|+.|+++++
T Consensus 325 ~L~~L~L~~N~l~~~~---------~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 325 RLENLYLDHNSIVTLK---------LSTHHTLKNLTLSHN 355 (597)
T ss_dssp TCSEEECCSSCCCCCC---------CCTTCCCSEEECCSS
T ss_pred CCCEEECCCCCCCCcC---------hhhcCCCCEEEeeCC
Confidence 8888888888866542 234667777777774
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=3.3e-20 Score=205.71 Aligned_cols=289 Identities=18% Similarity=0.202 Sum_probs=181.9
Q ss_pred ccceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccccEEe
Q 037935 492 KKCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLD 570 (1085)
Q Consensus 492 ~~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~ 570 (1085)
.+++.++++++.+..+|..+ .+++++|++++|. +..++...|.++++|++|++++|.++.+ |..++++++|++|+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCc---CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 36788888888888888755 3789999999887 6778877789999999999999999887 78899999999999
Q ss_pred ccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCC---CCcc-ccc
Q 037935 571 LTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSIL---PDGL-FTK 646 (1085)
Q Consensus 571 Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~---~~~~-~l~ 646 (1085)
+++| .++.+|..++ ++|++|++++|.+ .......+.++++|++|+++.|.+... +..+ .++
T Consensus 107 Ls~n-~l~~l~~~~~---~~L~~L~l~~n~l-----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 107 LSKN-QLKELPEKMP---KTLQELRVHENEI-----------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp CCSS-CCSBCCSSCC---TTCCEEECCSSCC-----------CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred CCCC-cCCccChhhc---ccccEEECCCCcc-----------cccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 9999 8999988652 7899999999987 344556688899999999988876531 1111 344
Q ss_pred ccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCc
Q 037935 647 KLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLK 726 (1085)
Q Consensus 647 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~ 726 (1085)
+|+.|++..+. . ..+|..+ +++|++|++++|. +.
T Consensus 172 ~L~~L~l~~n~------------------------------------------l-~~l~~~~--~~~L~~L~l~~n~-l~ 205 (330)
T 1xku_A 172 KLSYIRIADTN------------------------------------------I-TTIPQGL--PPSLTELHLDGNK-IT 205 (330)
T ss_dssp TCCEEECCSSC------------------------------------------C-CSCCSSC--CTTCSEEECTTSC-CC
T ss_pred CcCEEECCCCc------------------------------------------c-ccCCccc--cccCCEEECCCCc-CC
Confidence 44444442210 0 0122221 1455666665543 22
Q ss_pred cccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccC
Q 037935 727 YIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNC 806 (1085)
Q Consensus 727 ~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 806 (1085)
.+ ++..+..+++|+.|++++|. +...... ....+++|++|++++|
T Consensus 206 ~~-~~~~~~~l~~L~~L~Ls~n~---------------------------------l~~~~~~-~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 206 KV-DAASLKGLNNLAKLGLSFNS---------------------------------ISAVDNG-SLANTPHLRELHLNNN 250 (330)
T ss_dssp EE-CTGGGTTCTTCCEEECCSSC---------------------------------CCEECTT-TGGGSTTCCEEECCSS
T ss_pred cc-CHHHhcCCCCCCEEECCCCc---------------------------------CceeChh-hccCCCCCCEEECCCC
Confidence 22 12335555555555555553 1111110 0123445555555554
Q ss_pred CCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcC----ccCCceEEEecCCcccc--cchh
Q 037935 807 DKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQH----LFGSLKQLRVGDDDLAC--FPLD 880 (1085)
Q Consensus 807 ~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~----~~~~L~~L~l~~n~l~~--~~~~ 880 (1085)
. +..+| .....+++|++|++++|.++.++...|... ..++|+.|++++|.+.. +++.
T Consensus 251 ~-l~~lp----------------~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~ 313 (330)
T 1xku_A 251 K-LVKVP----------------GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313 (330)
T ss_dssp C-CSSCC----------------TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred c-CccCC----------------hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcc
Confidence 2 22222 112346777888888887777766555321 13567777777777653 4455
Q ss_pred HHhhccccceEEeeccc
Q 037935 881 LLERFHNLEFLYLSDCS 897 (1085)
Q Consensus 881 ~~~~l~~L~~L~l~~~~ 897 (1085)
.|..+.+|+.+++++|+
T Consensus 314 ~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 314 TFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGTTCCCGGGEEC----
T ss_pred ccccccceeEEEecccC
Confidence 66677777777777763
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.1e-20 Score=209.59 Aligned_cols=246 Identities=19% Similarity=0.252 Sum_probs=136.0
Q ss_pred cceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhh
Q 037935 542 KLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELM 621 (1085)
Q Consensus 542 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 621 (1085)
+|++++++++.++.+|..+. ++|++|++++| .++.+++..|+++++|++|++++|.+. ...+..+.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKIS-----------KIHEKAFS 99 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC-----------EECGGGST
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccC-----------ccCHhHhh
Confidence 56777777777777776553 56777777777 677766655677777777777777662 23345566
Q ss_pred cCCCCcEEEEEeccCCCCCCcccccccceeeEEecCCCcccccccccccccccccccceeehhhhhhccccccccccccc
Q 037935 622 HLQRLTTLEIDVEDDSILPDGLFTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHY 701 (1085)
Q Consensus 622 ~L~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~ 701 (1085)
++++|++|++++|.+..+|..+
T Consensus 100 ~l~~L~~L~L~~n~l~~l~~~~---------------------------------------------------------- 121 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVEIPPNL---------------------------------------------------------- 121 (332)
T ss_dssp TCTTCCEEECCSSCCCSCCSSC----------------------------------------------------------
T ss_pred CcCCCCEEECCCCcCCccCccc----------------------------------------------------------
Confidence 7777777777777665544321
Q ss_pred CCCCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCC
Q 037935 702 NQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLP 781 (1085)
Q Consensus 702 ~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~ 781 (1085)
+++|++|++++|. +..+ +...+..+++|+.|++++|.. ....... .....+ +|+.|++++
T Consensus 122 ---------~~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~-----~~~~~l-~L~~L~l~~-- 181 (332)
T 2ft3_A 122 ---------PSSLVELRIHDNR-IRKV-PKGVFSGLRNMNCIEMGGNPL-ENSGFEP-----GAFDGL-KLNYLRISE-- 181 (332)
T ss_dssp ---------CTTCCEEECCSSC-CCCC-CSGGGSSCSSCCEEECCSCCC-BGGGSCT-----TSSCSC-CCSCCBCCS--
T ss_pred ---------cccCCEEECCCCc-cCcc-CHhHhCCCccCCEEECCCCcc-ccCCCCc-----ccccCC-ccCEEECcC--
Confidence 1356666666653 3333 223456667777777766652 1100000 000011 344444433
Q ss_pred ccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCcc
Q 037935 782 ELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLF 861 (1085)
Q Consensus 782 ~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 861 (1085)
+. +..+|. ...++|++|++++|.++...+..+.. +
T Consensus 182 ------------------------n~-l~~l~~------------------~~~~~L~~L~l~~n~i~~~~~~~l~~--l 216 (332)
T 2ft3_A 182 ------------------------AK-LTGIPK------------------DLPETLNELHLDHNKIQAIELEDLLR--Y 216 (332)
T ss_dssp ------------------------SB-CSSCCS------------------SSCSSCSCCBCCSSCCCCCCTTSSTT--C
T ss_pred ------------------------CC-CCccCc------------------cccCCCCEEECCCCcCCccCHHHhcC--C
Confidence 21 111110 01246666666666666655544444 5
Q ss_pred CCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCccccccc
Q 037935 862 GSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQQL 932 (1085)
Q Consensus 862 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l 932 (1085)
++|++|++++|.++.++...+..+++|+.|++++|.++.++ ..+..+++|+.|++++ +.++.+
T Consensus 217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-------~~l~~l~~L~~L~l~~-N~l~~~ 279 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-------AGLPDLKLLQVVYLHT-NNITKV 279 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC-------TTGGGCTTCCEEECCS-SCCCBC
T ss_pred CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC-------hhhhcCccCCEEECCC-CCCCcc
Confidence 66777777776666666655666677777777777655432 1233455555555555 344444
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.5e-20 Score=208.49 Aligned_cols=86 Identities=22% Similarity=0.305 Sum_probs=54.3
Q ss_pred cceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhh
Q 037935 542 KLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELM 621 (1085)
Q Consensus 542 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 621 (1085)
+|++++++++.++.+|..+. ++|++|++++| .++.+++..|+++++|++|++++|.+. ...+..+.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKIS-----------KISPGAFA 97 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCC-----------CBCTTTTT
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCC-----------eeCHHHhc
Confidence 56666777666666665443 56677777776 666666655567777777777776662 22344566
Q ss_pred cCCCCcEEEEEeccCCCCCC
Q 037935 622 HLQRLTTLEIDVEDDSILPD 641 (1085)
Q Consensus 622 ~L~~L~~L~l~~~~~~~~~~ 641 (1085)
++++|++|++++|.+..+|.
T Consensus 98 ~l~~L~~L~Ls~n~l~~l~~ 117 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKELPE 117 (330)
T ss_dssp TCTTCCEEECCSSCCSBCCS
T ss_pred CCCCCCEEECCCCcCCccCh
Confidence 66777777777666554443
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.2e-20 Score=205.93 Aligned_cols=126 Identities=18% Similarity=0.269 Sum_probs=96.8
Q ss_pred cceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccccEEec
Q 037935 493 KCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDL 571 (1085)
Q Consensus 493 ~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L 571 (1085)
.++.++++++.+..+|..+ .+++++|++.+|. +..+++..|.++++|++|++++|.++.+ |..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCc---CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777888888888887655 3688888888886 5667666688888888888888888876 677888888888888
Q ss_pred cCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC
Q 037935 572 TDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 572 s~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 637 (1085)
++| .++.+|..++ ++|++|++++|.+. ......+.++++|++|++++|.+.
T Consensus 110 ~~n-~l~~l~~~~~---~~L~~L~l~~n~i~-----------~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 110 SKN-HLVEIPPNLP---SSLVELRIHDNRIR-----------KVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CSS-CCCSCCSSCC---TTCCEEECCSSCCC-----------CCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCC-cCCccCcccc---ccCCEEECCCCccC-----------ccCHhHhCCCccCCEEECCCCccc
Confidence 888 8888887652 78888888888873 222344677888888888887765
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=4.5e-22 Score=240.71 Aligned_cols=90 Identities=16% Similarity=0.269 Sum_probs=43.8
Q ss_pred CCCcceEEEecCCcccC-Cchhhhcc--ccccEEeccCcccccc--cchhhhhccccCCEEeccCCCcchhhcccCCccc
Q 037935 539 GMKKLRVVDLTRVRLFS-LPSSIGQL--TKLRMLDLTDCLQLKF--IVPNILSSFTRLEELYMGSCSIKWEVRKGNSERS 613 (1085)
Q Consensus 539 ~l~~Lr~L~Ls~~~i~~-lp~~i~~L--~~L~~L~Ls~~~~l~~--lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~ 613 (1085)
.+++|++|+|++|.++. .+..+..+ .+|++|++++|..+.. ++ .+..++++|++|++++|.+... .
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~--------~ 180 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLL-SIVTHCRKIKTLLMEESSFSEK--------D 180 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHH-HHHHHCTTCSEEECTTCEEECC--------C
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHH-HHHhhCCCCCEEECccccccCc--------c
Confidence 56666666666665543 23334442 3366666666632221 11 1124566666666666654100 0
Q ss_pred cc-cHHHhhcCCCCcEEEEEeccCC
Q 037935 614 NA-SLDELMHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 614 ~~-~~~~l~~L~~L~~L~l~~~~~~ 637 (1085)
.. ...-+..+++|++|+++++.+.
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~ 205 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFA 205 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCS
T ss_pred hhHHHHHHhcCCCccEEEeeccCCC
Confidence 00 1222345566666666655544
No 50
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=9.8e-22 Score=237.91 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=59.4
Q ss_pred hhcCCCcceEEEecCCcccC-Cchhhh-ccccccEEeccCcccccc--cchhhhhccccCCEEeccCCCcchhhcccCCc
Q 037935 536 FFKGMKKLRVVDLTRVRLFS-LPSSIG-QLTKLRMLDLTDCLQLKF--IVPNILSSFTRLEELYMGSCSIKWEVRKGNSE 611 (1085)
Q Consensus 536 ~~~~l~~Lr~L~Ls~~~i~~-lp~~i~-~L~~L~~L~Ls~~~~l~~--lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~ 611 (1085)
++..+++|++|+|++|.++. .+..+. .+++|++|++++|..++. ++ .++.++++|++|++++|.+.
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~i~--------- 169 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA-AIAATCRNLKELDLRESDVD--------- 169 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHH-HHHHHCTTCCEEECTTCEEE---------
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHH-HHHHhCCCCCEEeCcCCccC---------
Confidence 34567889999999888765 234454 688999999988855554 33 33468889999999888752
Q ss_pred cccccHHHh----hcCCCCcEEEEEecc
Q 037935 612 RSNASLDEL----MHLQRLTTLEIDVED 635 (1085)
Q Consensus 612 ~~~~~~~~l----~~L~~L~~L~l~~~~ 635 (1085)
...+..+ ..+++|+.|+++++.
T Consensus 170 --~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 170 --DVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp --CCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred --CcchHHHHHHhhcCCcCcEEEecccC
Confidence 2122222 256678888777664
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=7.2e-21 Score=230.13 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=87.0
Q ss_pred CCCCcceeeeccCCCccccccChhhhcC-CC-cceEEEecCCc-cc--CCchhhhccccccEEeccCcccccccch----
Q 037935 512 ECPQLEFLHIDPKITFAELNIPDNFFKG-MK-KLRVVDLTRVR-LF--SLPSSIGQLTKLRMLDLTDCLQLKFIVP---- 582 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~-l~-~Lr~L~Ls~~~-i~--~lp~~i~~L~~L~~L~Ls~~~~l~~lp~---- 582 (1085)
.+++|++|++.++. ........+.. ++ +|++|+|++|. +. .++..+.++++|++|+|++| .+.....
T Consensus 110 ~~~~L~~L~L~~~~---i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~ 185 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI---VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWLH 185 (592)
T ss_dssp HCTTCCEEEEESCB---CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHHH
T ss_pred hCCCCCeEEeeccE---ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcchhHHH
Confidence 57889999998875 22211122333 33 49999998886 22 23444568899999999998 6654421
Q ss_pred hhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc-cccccceeeEE
Q 037935 583 NILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL-FTKKLERFDIS 654 (1085)
Q Consensus 583 ~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~ 654 (1085)
....++++|++|++++|.+.... .......+.++++|++|+++.+.+..++..+ .+++|+.|.+.
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~-------~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKIS-------PKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCC-------HHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred HHHhcCCCccEEEeeccCCCccC-------HHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 23477889999999988873100 0123344567889999999888777666444 66778877774
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=7.5e-19 Score=208.22 Aligned_cols=258 Identities=18% Similarity=0.135 Sum_probs=165.0
Q ss_pred cceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEecc
Q 037935 493 KCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLT 572 (1085)
Q Consensus 493 ~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls 572 (1085)
.++.|+++++.+..+|..+. ++|++|++++|. +..+|. .+++|++|+|++|.++.+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~---l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNN---LTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCC---CSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCC---CCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 47788898999888887664 789999999887 567776 47889999999999988886 78899999999
Q ss_pred CcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcccccccceee
Q 037935 573 DCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLERFD 652 (1085)
Q Consensus 573 ~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 652 (1085)
+| .++.+|. .+.+|++|++++|.+...+. .+++|++|++++|.+..+|.. +.+|+.|+
T Consensus 110 ~N-~l~~l~~----~l~~L~~L~L~~N~l~~lp~---------------~l~~L~~L~Ls~N~l~~l~~~--~~~L~~L~ 167 (622)
T 3g06_A 110 SN-PLTHLPA----LPSGLCKLWIFGNQLTSLPV---------------LPPGLQELSVSDNQLASLPAL--PSELCKLW 167 (622)
T ss_dssp SC-CCCCCCC----CCTTCCEEECCSSCCSCCCC---------------CCTTCCEEECCSSCCSCCCCC--CTTCCEEE
T ss_pred CC-cCCCCCC----CCCCcCEEECCCCCCCcCCC---------------CCCCCCEEECcCCcCCCcCCc--cCCCCEEE
Confidence 98 8888886 56888999999888742211 247888888888877766542 23344443
Q ss_pred EEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchh
Q 037935 653 ISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSAS 732 (1085)
Q Consensus 653 l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~ 732 (1085)
+..+. + ..+| ..+++|+.|++++|. +..+++
T Consensus 168 L~~N~-------------------------------------l------~~l~---~~~~~L~~L~Ls~N~-l~~l~~-- 198 (622)
T 3g06_A 168 AYNNQ-------------------------------------L------TSLP---MLPSGLQELSVSDNQ-LASLPT-- 198 (622)
T ss_dssp CCSSC-------------------------------------C------SCCC---CCCTTCCEEECCSSC-CSCCCC--
T ss_pred CCCCC-------------------------------------C------CCCc---ccCCCCcEEECCCCC-CCCCCC--
Confidence 32110 0 0112 123445555554432 222221
Q ss_pred hHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccc
Q 037935 733 TIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLS 812 (1085)
Q Consensus 733 ~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~ 812 (1085)
.+++|+.|++++|. +..++ ..+++|+.|++++| .++.+
T Consensus 199 ---~~~~L~~L~L~~N~---------------------------------l~~l~-----~~~~~L~~L~Ls~N-~L~~l 236 (622)
T 3g06_A 199 ---LPSELYKLWAYNNR---------------------------------LTSLP-----ALPSGLKELIVSGN-RLTSL 236 (622)
T ss_dssp ---CCTTCCEEECCSSC---------------------------------CSSCC-----CCCTTCCEEECCSS-CCSCC
T ss_pred ---ccchhhEEECcCCc---------------------------------ccccC-----CCCCCCCEEEccCC-ccCcC
Confidence 12444444444443 22111 12355666666555 23322
Q ss_pred cCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEE
Q 037935 813 QNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLY 892 (1085)
Q Consensus 813 ~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 892 (1085)
| ..+++|+.|++++|.++.++. .+++|+.|++++|+++.+|. .+..+++|+.|+
T Consensus 237 p-------------------~~l~~L~~L~Ls~N~L~~lp~------~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~L~ 290 (622)
T 3g06_A 237 P-------------------VLPSELKELMVSGNRLTSLPM------LPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVN 290 (622)
T ss_dssp C-------------------CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCCSCCG-GGGGSCTTCEEE
T ss_pred C-------------------CCCCcCcEEECCCCCCCcCCc------ccccCcEEeCCCCCCCcCCH-HHhhccccCEEE
Confidence 2 225677888888887776543 25778888888888877764 366778888888
Q ss_pred eecccccE
Q 037935 893 LSDCSYEV 900 (1085)
Q Consensus 893 l~~~~l~~ 900 (1085)
+++|++.+
T Consensus 291 L~~N~l~~ 298 (622)
T 3g06_A 291 LEGNPLSE 298 (622)
T ss_dssp CCSCCCCH
T ss_pred ecCCCCCC
Confidence 88887654
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=1.1e-20 Score=228.75 Aligned_cols=434 Identities=16% Similarity=0.071 Sum_probs=234.4
Q ss_pred hhhcCCCcceEEEecCCcc-cC---------------CchhhhccccccEEeccCcccccccchhhhh-ccccCCEEecc
Q 037935 535 NFFKGMKKLRVVDLTRVRL-FS---------------LPSSIGQLTKLRMLDLTDCLQLKFIVPNILS-SFTRLEELYMG 597 (1085)
Q Consensus 535 ~~~~~l~~Lr~L~Ls~~~i-~~---------------lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~-~L~~L~~L~L~ 597 (1085)
..+.++++|++|+++++.. .. ++.....+++|++|+|++| .+.......+. .+++|++|+++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCC
Confidence 3455556666666666531 11 1223457889999999999 66654333344 78999999999
Q ss_pred CCCcchhhcccCCccccccHHH-hhcCCCCcEEEEEeccCCCCCCc-----c-cccccceeeEEecCCCccccccccccc
Q 037935 598 SCSIKWEVRKGNSERSNASLDE-LMHLQRLTTLEIDVEDDSILPDG-----L-FTKKLERFDISIGDGSFDSTKIIGNDW 670 (1085)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~L~l~~~~~~~~~~~-----~-~l~~L~~L~l~~~~~~~~~~~~l~~~~ 670 (1085)
+|... ....+.. +.++++|++|++++|.+...... . .+++|+.|++..+....
T Consensus 139 ~~~~~----------~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~---------- 198 (594)
T 2p1m_B 139 SCEGF----------STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV---------- 198 (594)
T ss_dssp SCEEE----------EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCC----------
T ss_pred CcCCC----------CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcC----------
Confidence 99432 1222333 45899999999988875432211 1 34566666553221000
Q ss_pred ccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccc
Q 037935 671 FQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKS 750 (1085)
Q Consensus 671 ~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~ 750 (1085)
.. ..++..+..+++|++|++++|..+..+ +..+..+++|+.|.+.+|..
T Consensus 199 ------~~-----------------------~~l~~l~~~~~~L~~L~L~~~~~~~~l--~~~~~~~~~L~~L~l~~~~~ 247 (594)
T 2p1m_B 199 ------SF-----------------------SALERLVTRCPNLKSLKLNRAVPLEKL--ATLLQRAPQLEELGTGGYTA 247 (594)
T ss_dssp ------CH-----------------------HHHHHHHHHCTTCCEEECCTTSCHHHH--HHHHHHCTTCSEEECSBCCC
T ss_pred ------CH-----------------------HHHHHHHHhCCCCcEEecCCCCcHHHH--HHHHhcCCcceEcccccccC
Confidence 00 000111224567888888887665554 34567788888888766532
Q ss_pred ------hHHHhccCCcccccccccCCcccEE-ecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCC
Q 037935 751 ------LQEIISENRTDQVTAYFVFPRVTTL-KLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVP 823 (1085)
Q Consensus 751 ------l~~i~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~ 823 (1085)
+..+.. ....+++|+.| .+.+... ..+ ......+++|++|++.+|. +...
T Consensus 248 ~~~~~~~~~l~~--------~l~~~~~L~~Ls~~~~~~~-~~l--~~~~~~~~~L~~L~L~~~~-l~~~----------- 304 (594)
T 2p1m_B 248 EVRPDVYSGLSV--------ALSGCKELRCLSGFWDAVP-AYL--PAVYSVCSRLTTLNLSYAT-VQSY----------- 304 (594)
T ss_dssp CCCHHHHHHHHH--------HHHTCTTCCEEECCBTCCG-GGG--GGGHHHHTTCCEEECTTCC-CCHH-----------
T ss_pred ccchhhHHHHHH--------HHhcCCCcccccCCcccch-hhH--HHHHHhhCCCCEEEccCCC-CCHH-----------
Confidence 111111 11235666666 2322111 001 0111246788888888876 3321
Q ss_pred CCCCcccccccCCccceeeeccCCceeeecccCCcCccCCceEEEe---------cCCcccccchhHH-hhccccceEEe
Q 037935 824 AQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRV---------GDDDLACFPLDLL-ERFHNLEFLYL 893 (1085)
Q Consensus 824 ~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l---------~~n~l~~~~~~~~-~~l~~L~~L~l 893 (1085)
.+..+...+++|+.|++++| +.+.....+. ..+++|++|++ +++.++......+ ..+++|+.|.+
T Consensus 305 ---~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~-~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~ 379 (594)
T 2p1m_B 305 ---DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA-STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379 (594)
T ss_dssp ---HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH-HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred ---HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH-HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH
Confidence 11222346788888888887 3322111111 12678888888 3455654433222 35788888877
Q ss_pred ecccccEEEecCCccccccccccccceeccC-----CcccccccccC-CCchhhhHhhhhceeeeeccccccccCCCCcc
Q 037935 894 SDCSYEVVFSNEGYLETHARKLALIKRLNLT-----RLNHLQQLWKH-DSKELDFIFQHLQILRVLHCQNLLSLLPSSSV 967 (1085)
Q Consensus 894 ~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~-----~c~~L~~l~~~-~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~ 967 (1085)
+.|.++.... ......+++|+.|+++ +|+.++..+.. ........+++|+.|++++ .+.......+.
T Consensus 380 ~~~~l~~~~~-----~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~ 452 (594)
T 2p1m_B 380 FCRQMTNAAL-----ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIG 452 (594)
T ss_dssp EESCCCHHHH-----HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHH
T ss_pred hcCCcCHHHH-----HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHH
Confidence 7666543210 1111246788888887 56666644321 1111124567888888865 33322111222
Q ss_pred c-ccCccEEEeccccCcccccchhhhhhcccccEEEEcCCcccccccccccccccccccceeecccccccccccccccee
Q 037935 968 S-FRNLTRLETFACKKLMNLLTSSKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVFSKLSALSLFDLDSLTSF 1046 (1085)
Q Consensus 968 ~-l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 1046 (1085)
. +++|++|++++|. +++.........+++|++|++++|+. .+... .. -...+++|+.|++++|+. +.-
T Consensus 453 ~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~------~~--~~~~l~~L~~L~l~~~~~-~~~ 521 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKAL------LA--NASKLETMRSLWMSSCSV-SFG 521 (594)
T ss_dssp HHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHH------HH--TGGGGGGSSEEEEESSCC-BHH
T ss_pred HhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHH------HH--HHHhCCCCCEEeeeCCCC-CHH
Confidence 2 6778888887765 54433333346678888888888873 22211 00 111267888888888875 111
Q ss_pred cCCCccccCCCcCceeeccC
Q 037935 1047 SSGNYAFKLPSLQDLWVIGC 1066 (1085)
Q Consensus 1047 ~~~~~~~~l~~L~~L~i~~C 1066 (1085)
....+...+|.|+...+.+.
T Consensus 522 ~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 522 ACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHHhCCCCEEEEecCC
Confidence 11111234566655555443
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=4.6e-19 Score=205.61 Aligned_cols=65 Identities=23% Similarity=0.395 Sum_probs=49.8
Q ss_pred ccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeeccccc
Q 037935 833 KILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYE 899 (1085)
Q Consensus 833 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 899 (1085)
..+++|+.|++++|.++.+.+..|.. +++|+.|++++|+++.++...+..+++|+.|++++|++.
T Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSLIERNAFDG--LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCccCCCEEEeCCCcCceECHHHhcC--CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 34677888888888877777666655 678888888888888888777777888888888888743
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=204.58 Aligned_cols=65 Identities=25% Similarity=0.426 Sum_probs=52.2
Q ss_pred ccCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeeccccc
Q 037935 833 KILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYE 899 (1085)
Q Consensus 833 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 899 (1085)
..+++|+.|++++|.++.+.+..|.. +++|+.|++++|+++.++...+..+++|+.|++++|++.
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDN--LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTT--CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccCccCCEEECCCCceeEEChhhhcC--CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 34678888888888888877766665 788888888888888888877788888888888888843
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=197.80 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=43.5
Q ss_pred CCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEE
Q 037935 835 LPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVV 901 (1085)
Q Consensus 835 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~ 901 (1085)
+++|++|++++|.++...+..+.. +++|++|++++|.++.++...+..+++|+.|++++|.++..
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKS--IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTT--CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred CCCCCEEECCCCCcCccCHHHHhc--cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 345555555555555554444444 57777777777777777766666788888888888886553
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=8e-19 Score=196.50 Aligned_cols=143 Identities=17% Similarity=0.150 Sum_probs=109.6
Q ss_pred EEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccccEEeccCcc
Q 037935 497 ISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDLTDCL 575 (1085)
Q Consensus 497 Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~~~ 575 (1085)
.+.+++.++.+|..+. ++|++|++++|. +..++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 110 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN- 110 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCc---CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-
Confidence 6677788888887553 689999999887 6778877789999999999999999886 457899999999999999
Q ss_pred cccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEecc-CCCCCCc-c-cccccceee
Q 037935 576 QLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVED-DSILPDG-L-FTKKLERFD 652 (1085)
Q Consensus 576 ~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~~~-~-~l~~L~~L~ 652 (1085)
.++.+|...++++++|++|++++|.+...+. ...+.++++|++|++++|. +..++.. + .+++|+.|+
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~----------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE----------TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCS----------SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCc----------hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 8999998877899999999999998742211 0246788899999998883 5544332 2 445555555
Q ss_pred EE
Q 037935 653 IS 654 (1085)
Q Consensus 653 l~ 654 (1085)
++
T Consensus 181 l~ 182 (353)
T 2z80_A 181 ID 182 (353)
T ss_dssp EE
T ss_pred CC
Confidence 43
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=9.8e-19 Score=192.65 Aligned_cols=119 Identities=21% Similarity=0.281 Sum_probs=68.1
Q ss_pred CCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCC
Q 037935 513 CPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLE 592 (1085)
Q Consensus 513 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~ 592 (1085)
..+++.|++.++. ...+|.. +.++++|++|+|++|.++.+|..++++++|++|+|++| .++.+|.. ++++++|+
T Consensus 80 ~~~l~~L~L~~n~---l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVP---LPQFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSC---CSSCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCC
T ss_pred ccceeEEEccCCC---chhcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCC
Confidence 3556666666665 4456655 33477777777777777777766777777777777777 66666665 36777777
Q ss_pred EEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCC
Q 037935 593 ELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSIL 639 (1085)
Q Consensus 593 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 639 (1085)
+|++++|.+....+..... ......+.++++|++|++++|.+..+
T Consensus 154 ~L~L~~n~~~~~~p~~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~l 198 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLAS--TDASGEHQGLVNLQSLRLEWTGIRSL 198 (328)
T ss_dssp EEEEEEETTCCCCCSCSEE--EC-CCCEEESTTCCEEEEEEECCCCC
T ss_pred EEECCCCCCccccChhHhh--ccchhhhccCCCCCEEECcCCCcCcc
Confidence 7777776553221110000 00011133466666666666655433
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=7.6e-21 Score=222.17 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=71.9
Q ss_pred CCcceeeeccCCCcccccc-ChhhhcCCCcceEEEecCCccc-----CCchhhhccccccEEeccCccccccc-chhhhh
Q 037935 514 PQLEFLHIDPKITFAELNI-PDNFFKGMKKLRVVDLTRVRLF-----SLPSSIGQLTKLRMLDLTDCLQLKFI-VPNILS 586 (1085)
Q Consensus 514 ~~Lr~L~l~~~~~~~~~~l-~~~~~~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~Ls~~~~l~~l-p~~~~~ 586 (1085)
++|++|+++++. .... ...+|..+++|++|++++|.++ .+|..+..+++|++|++++| .+... +..++.
T Consensus 3 ~~l~~L~Ls~~~---l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEE---LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCC---CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHH
T ss_pred ccceehhhhhcc---cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHH
Confidence 456677776665 2222 2234667788888888888776 35667777888888888887 66543 223334
Q ss_pred ccc----cCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC
Q 037935 587 SFT----RLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 587 ~L~----~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 637 (1085)
.+. +|++|++++|.+.... ....+..+.++++|++|++++|.+.
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~-------~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAG-------CGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGG-------HHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHhhCCCceeEEEccCCCCCHHH-------HHHHHHHHccCCceeEEECCCCcCc
Confidence 455 6888888888763100 0123556777788888888777543
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=5.6e-19 Score=194.59 Aligned_cols=204 Identities=25% Similarity=0.357 Sum_probs=163.3
Q ss_pred ccceEEEeeccCcccccccC-CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEe
Q 037935 492 KKCYAISLLNSSIHEVSLEF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLD 570 (1085)
Q Consensus 492 ~~~r~Lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~ 570 (1085)
..++.|++.++.+..+|..+ .+++|++|++.+|. +..+|.. |.++++|++|+|++|.++.+|..++++++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~---l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG---LMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC---CCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCC---ccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 46899999999999998765 78999999999998 5578864 7889999999999999999999999999999999
Q ss_pred ccCcccccccchhh--------hhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCc
Q 037935 571 LTDCLQLKFIVPNI--------LSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDG 642 (1085)
Q Consensus 571 Ls~~~~l~~lp~~~--------~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 642 (1085)
+++|..+..+|..+ ++++++|++|++++|.+. ..+..+.++++|++|++++|.+..+|..
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~lp~~l~~l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------SLPASIANLQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------------CCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC------------cchHhhcCCCCCCEEEccCCCCCcCchh
Confidence 99986778888764 234999999999999873 3456689999999999999999888776
Q ss_pred c-cccccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcC
Q 037935 643 L-FTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWG 721 (1085)
Q Consensus 643 ~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~ 721 (1085)
+ .+++|+.|+++.+ ...+.+|.++..+++|+.|+|++
T Consensus 225 l~~l~~L~~L~Ls~n------------------------------------------~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 225 IHHLPKLEELDLRGC------------------------------------------TALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp GGGCTTCCEEECTTC------------------------------------------TTCCBCCCCTTCCCCCCEEECTT
T ss_pred hccCCCCCEEECcCC------------------------------------------cchhhhHHHhcCCCCCCEEECCC
Confidence 5 5666666665322 22234666777778888888888
Q ss_pred CCCCccccchhhHhhcccccEEEeccccchHHHh
Q 037935 722 CDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEII 755 (1085)
Q Consensus 722 ~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~ 755 (1085)
|+..+.+|. .++.+++|+.|++++|..+..++
T Consensus 263 n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 263 CSNLLTLPL--DIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CTTCCBCCT--TGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCchhhcch--hhhcCCCCCEEeCCCCCchhhcc
Confidence 777776633 47778888888888777555443
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=6.2e-19 Score=203.73 Aligned_cols=85 Identities=18% Similarity=0.273 Sum_probs=73.5
Q ss_pred CCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCcccccccc
Q 037935 835 LPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARK 914 (1085)
Q Consensus 835 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~ 914 (1085)
+++|++|++++|.++.+.+..|.. +++|++|++++|+++.++...+..+++|+.|++++|.++.++ ...+..
T Consensus 206 l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~ 277 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIRPGSFQG--LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP------HDLFTP 277 (440)
T ss_dssp CSSCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC------TTTTSS
T ss_pred CcccCEEECCCCccCccChhhhcc--CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC------hhHhcc
Confidence 688999999999999888877776 899999999999999999888999999999999999988664 234566
Q ss_pred ccccceeccCCcc
Q 037935 915 LALIKRLNLTRLN 927 (1085)
Q Consensus 915 l~~L~~L~l~~c~ 927 (1085)
+++|+.|++++++
T Consensus 278 l~~L~~L~L~~Np 290 (440)
T 3zyj_A 278 LHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEcCCCC
Confidence 8889999998743
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=2.3e-19 Score=196.58 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=74.9
Q ss_pred CCcceeeeccCCCcccc--ccChhhhcCCCcceEEEecC-Cccc-CCchhhhccccccEEeccCccccc-ccchhhhhcc
Q 037935 514 PQLEFLHIDPKITFAEL--NIPDNFFKGMKKLRVVDLTR-VRLF-SLPSSIGQLTKLRMLDLTDCLQLK-FIVPNILSSF 588 (1085)
Q Consensus 514 ~~Lr~L~l~~~~~~~~~--~l~~~~~~~l~~Lr~L~Ls~-~~i~-~lp~~i~~L~~L~~L~Ls~~~~l~-~lp~~~~~~L 588 (1085)
.+++.|++.++.. .. .+|. .|.++++|++|++++ |.+. .+|..++++++|++|++++| .++ .+|.. ++++
T Consensus 50 ~~l~~L~L~~~~l--~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNL--PKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDF-LSQI 124 (313)
T ss_dssp CCEEEEEEECCCC--SSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGG-GGGC
T ss_pred ceEEEEECCCCCc--cCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHH-HhCC
Confidence 4667777776652 12 4554 467788888888874 6665 46777888888888888887 666 45554 4788
Q ss_pred ccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC
Q 037935 589 TRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 589 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 637 (1085)
++|++|++++|.+. ...+..+..+++|++|++++|.+.
T Consensus 125 ~~L~~L~Ls~N~l~-----------~~~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 125 KTLVTLDFSYNALS-----------GTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp TTCCEEECCSSEEE-----------SCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCCEEeCCCCccC-----------CcCChHHhcCCCCCeEECcCCccc
Confidence 88888888888762 344556777888888888777654
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=6.9e-19 Score=204.10 Aligned_cols=85 Identities=22% Similarity=0.260 Sum_probs=73.1
Q ss_pred CCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCcccccccc
Q 037935 835 LPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARK 914 (1085)
Q Consensus 835 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~ 914 (1085)
+++|++|++++|.++.+.+..|.. +++|+.|++++|+++.+++..+..+++|+.|++++|.++.+++ ..+..
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~ 288 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPGSFHG--LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH------DLFTP 288 (452)
T ss_dssp CTTCCEEECTTSCCSEECGGGGTT--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT------TSSTT
T ss_pred cccccEEECcCCcCcccCcccccC--ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh------HHhcc
Confidence 688999999999999888877776 8999999999999999988889999999999999999886542 34566
Q ss_pred ccccceeccCCcc
Q 037935 915 LALIKRLNLTRLN 927 (1085)
Q Consensus 915 l~~L~~L~l~~c~ 927 (1085)
+++|+.|++++++
T Consensus 289 l~~L~~L~L~~Np 301 (452)
T 3zyi_A 289 LRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEccCCC
Confidence 8889999998743
No 64
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=1.1e-18 Score=191.27 Aligned_cols=250 Identities=17% Similarity=0.148 Sum_probs=169.6
Q ss_pred CcceEEEecCCccc---CCchhhhccccccEEeccC-ccccc-ccchhhhhccccCCEEeccCCCcchhhcccCCccccc
Q 037935 541 KKLRVVDLTRVRLF---SLPSSIGQLTKLRMLDLTD-CLQLK-FIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNA 615 (1085)
Q Consensus 541 ~~Lr~L~Ls~~~i~---~lp~~i~~L~~L~~L~Ls~-~~~l~-~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~ 615 (1085)
.+++.|+|++|.+. .+|..++++++|++|++++ | .+. .+|.. |+++++|++|++++|.+. ..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-~l~~~~p~~-l~~l~~L~~L~Ls~n~l~-----------~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-NLVGPIPPA-IAKLTQLHYLYITHTNVS-----------GA 116 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET-TEESCCCGG-GGGCTTCSEEEEEEECCE-----------EE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC-cccccCChh-HhcCCCCCEEECcCCeeC-----------Cc
Confidence 57999999999998 4899999999999999995 6 665 66766 599999999999999983 34
Q ss_pred cHHHhhcCCCCcEEEEEeccCCCCCCcccccccceeeEEecCCCcccccccccccccccccccceeehhhhhhccccccc
Q 037935 616 SLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINV 695 (1085)
Q Consensus 616 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L 695 (1085)
.+..+.++++|++|++++|.+..
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~--------------------------------------------------------- 139 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSG--------------------------------------------------------- 139 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEES---------------------------------------------------------
T ss_pred CCHHHhCCCCCCEEeCCCCccCC---------------------------------------------------------
Confidence 56678899999999998887652
Q ss_pred ccccccCCCCCcccccccccEEEEcCCCCCccccchhhHhhcc-cccEEEeccccchHHHhccCCcccccccccCCcccE
Q 037935 696 DEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLE-QLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTT 774 (1085)
Q Consensus 696 ~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~-~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~ 774 (1085)
..|..+..+++|++|++++|.....+| ..++.++ +|+.|++++|.....++.. ...++ |+.
T Consensus 140 -------~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~~L~~L~L~~N~l~~~~~~~--------~~~l~-L~~ 201 (313)
T 1ogq_A 140 -------TLPPSISSLPNLVGITFDGNRISGAIP--DSYGSFSKLFTSMTISRNRLTGKIPPT--------FANLN-LAF 201 (313)
T ss_dssp -------CCCGGGGGCTTCCEEECCSSCCEEECC--GGGGCCCTTCCEEECCSSEEEEECCGG--------GGGCC-CSE
T ss_pred -------cCChHHhcCCCCCeEECcCCcccCcCC--HHHhhhhhcCcEEECcCCeeeccCChH--------HhCCc-ccE
Confidence 134445567778888887765443442 3466666 7788877777521111100 00111 444
Q ss_pred EecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecc
Q 037935 775 LKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQD 854 (1085)
Q Consensus 775 L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~ 854 (1085)
|++++ +..-...+ ..+..+++|+.|++++|.++...+.
T Consensus 202 L~Ls~--------------------------N~l~~~~~----------------~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 202 VDLSR--------------------------NMLEGDAS----------------VLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp EECCS--------------------------SEEEECCG----------------GGCCTTSCCSEEECCSSEECCBGGG
T ss_pred EECcC--------------------------CcccCcCC----------------HHHhcCCCCCEEECCCCceeeecCc
Confidence 44443 21111111 1123467888888888887655444
Q ss_pred cCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCccccccccccccceeccCCccccc
Q 037935 855 DFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARKLALIKRLNLTRLNHLQ 930 (1085)
Q Consensus 855 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~ 930 (1085)
+.. +++|++|++++|.++...+..+..+++|+.|++++|++++..+.. ..+++|+.+++.+.+.+.
T Consensus 240 -~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-------~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 240 -VGL--SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-------GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -CCC--CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-------TTGGGSCGGGTCSSSEEE
T ss_pred -ccc--cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-------ccccccChHHhcCCCCcc
Confidence 333 688889999988888554466788889999999999877554322 346667777777755454
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=3.3e-18 Score=202.75 Aligned_cols=256 Identities=21% Similarity=0.125 Sum_probs=170.6
Q ss_pred CCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCE
Q 037935 514 PQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEE 593 (1085)
Q Consensus 514 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~ 593 (1085)
.++++|++.++. ...+|..++ ++|++|+|++|.++.+|. .+++|++|+|++| .++.+|. .+++|++
T Consensus 40 ~~l~~L~ls~n~---L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESG---LTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV----LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSC---CSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC----CCTTCCE
T ss_pred CCCcEEEecCCC---cCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC----CCCCCCE
Confidence 357778887776 567776533 678888888888887776 5678888888888 7777775 5677888
Q ss_pred EeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcccccccceeeEEecCCCcccccccccccccc
Q 037935 594 LYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLERFDISIGDGSFDSTKIIGNDWFQT 673 (1085)
Q Consensus 594 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 673 (1085)
|++++|.+... +. .+++|+.|++++|.+..+|..
T Consensus 106 L~Ls~N~l~~l------------~~---~l~~L~~L~L~~N~l~~lp~~------------------------------- 139 (622)
T 3g06_A 106 LSIFSNPLTHL------------PA---LPSGLCKLWIFGNQLTSLPVL------------------------------- 139 (622)
T ss_dssp EEECSCCCCCC------------CC---CCTTCCEEECCSSCCSCCCCC-------------------------------
T ss_pred EECcCCcCCCC------------CC---CCCCcCEEECCCCCCCcCCCC-------------------------------
Confidence 88888776321 11 456777777777766655542
Q ss_pred cccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHH
Q 037935 674 FNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQE 753 (1085)
Q Consensus 674 ~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~ 753 (1085)
+++|++|++++| .+..++. .+++|+.|++++|. +..
T Consensus 140 -------------------------------------l~~L~~L~Ls~N-~l~~l~~-----~~~~L~~L~L~~N~-l~~ 175 (622)
T 3g06_A 140 -------------------------------------PPGLQELSVSDN-QLASLPA-----LPSELCKLWAYNNQ-LTS 175 (622)
T ss_dssp -------------------------------------CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSC
T ss_pred -------------------------------------CCCCCEEECcCC-cCCCcCC-----ccCCCCEEECCCCC-CCC
Confidence 235555666554 2333321 23556666666554 222
Q ss_pred HhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccc
Q 037935 754 IISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKK 833 (1085)
Q Consensus 754 i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~ 833 (1085)
++ ..+++|+.|+++++. +..++ ..+++|+.|.+.+|. +..+| .
T Consensus 176 l~-----------~~~~~L~~L~Ls~N~-l~~l~-----~~~~~L~~L~L~~N~-l~~l~-------------------~ 218 (622)
T 3g06_A 176 LP-----------MLPSGLQELSVSDNQ-LASLP-----TLPSELYKLWAYNNR-LTSLP-------------------A 218 (622)
T ss_dssp CC-----------CCCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSC-CSSCC-------------------C
T ss_pred Cc-----------ccCCCCcEEECCCCC-CCCCC-----CccchhhEEECcCCc-ccccC-------------------C
Confidence 21 135666777666642 33222 235788888888773 33332 2
Q ss_pred cCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccEEEecCCccccccc
Q 037935 834 ILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHAR 913 (1085)
Q Consensus 834 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~ 913 (1085)
.+++|+.|++++|.++.++ ..+++|+.|++++|+++.+|. .+++|+.|++++|.++.++ ..+.
T Consensus 219 ~~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp-------~~l~ 281 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTSLP------VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP-------ESLI 281 (622)
T ss_dssp CCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCC-------GGGG
T ss_pred CCCCCCEEEccCCccCcCC------CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCC-------HHHh
Confidence 2588999999999988754 226889999999999999885 6789999999999987552 2466
Q ss_pred cccccceeccCCcc
Q 037935 914 KLALIKRLNLTRLN 927 (1085)
Q Consensus 914 ~l~~L~~L~l~~c~ 927 (1085)
.+++|+.|++++++
T Consensus 282 ~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 282 HLSSETTVNLEGNP 295 (622)
T ss_dssp GSCTTCEEECCSCC
T ss_pred hccccCEEEecCCC
Confidence 78889999998843
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=7.1e-19 Score=192.75 Aligned_cols=126 Identities=18% Similarity=0.207 Sum_probs=92.4
Q ss_pred eEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC---chhhhccccccEEec
Q 037935 495 YAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL---PSSIGQLTKLRMLDL 571 (1085)
Q Consensus 495 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l---p~~i~~L~~L~~L~L 571 (1085)
+.++..++.++.+|..+. ++|+.|++.+|. +..+|..+|.++++|++|++++|.++.+ |..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~---l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCc---cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 356677777777776543 688888888887 6678887788888888888888888765 677778888888888
Q ss_pred cCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccC
Q 037935 572 TDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDD 636 (1085)
Q Consensus 572 s~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 636 (1085)
++| .+..+|.. +.++++|++|++++|.+...+ ....+..+++|++|++++|.+
T Consensus 86 s~n-~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~l~~L~~L~l~~n~l 138 (306)
T 2z66_A 86 SFN-GVITMSSN-FLGLEQLEHLDFQHSNLKQMS----------EFSVFLSLRNLIYLDISHTHT 138 (306)
T ss_dssp CSC-SEEEEEEE-EETCTTCCEEECTTSEEESST----------TTTTTTTCTTCCEEECTTSCC
T ss_pred CCC-ccccChhh-cCCCCCCCEEECCCCcccccc----------cchhhhhccCCCEEECCCCcC
Confidence 888 88888876 478888888888888763211 113355666666666665544
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=5.1e-19 Score=194.45 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=66.4
Q ss_pred ccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcc
Q 037935 529 ELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRK 607 (1085)
Q Consensus 529 ~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~ 607 (1085)
....+...+..+++|++|+|++|.++.++ ..++++++|++|++++| .++..++ +.++++|++|++++|.+..
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~Ls~n~l~~---- 94 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQE---- 94 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTCTTCCEEECCSSEEEE----
T ss_pred hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhcCCCCEEECcCCcccc----
Confidence 44455566777778888888888888765 57888888888888888 7777665 5888888888888887631
Q ss_pred cCCccccccHHHhhcCCCCcEEEEEeccCCC
Q 037935 608 GNSERSNASLDELMHLQRLTTLEIDVEDDSI 638 (1085)
Q Consensus 608 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 638 (1085)
+...++|++|++++|.+..
T Consensus 95 ------------l~~~~~L~~L~l~~n~l~~ 113 (317)
T 3o53_A 95 ------------LLVGPSIETLHAANNNISR 113 (317)
T ss_dssp ------------EEECTTCCEEECCSSCCSE
T ss_pred ------------ccCCCCcCEEECCCCccCC
Confidence 2234677777777776553
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=7.1e-20 Score=213.90 Aligned_cols=372 Identities=15% Similarity=0.061 Sum_probs=190.0
Q ss_pred CCcceEEEecCCcccCCc--hhhhccccccEEeccCcccccc-----cchhhhhccccCCEEeccCCCcchhhcccCCcc
Q 037935 540 MKKLRVVDLTRVRLFSLP--SSIGQLTKLRMLDLTDCLQLKF-----IVPNILSSFTRLEELYMGSCSIKWEVRKGNSER 612 (1085)
Q Consensus 540 l~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~Ls~~~~l~~-----lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~ 612 (1085)
.++|++|+|+++.++..+ ..+..+++|++|++++| .++. ++.. +..+++|++|++++|.+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~---------- 69 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSA-LRVNPALAELNLRSNELG---------- 69 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHH-HHTCTTCCEEECTTCCCH----------
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCC----------
Confidence 357999999999987754 34789999999999999 7773 4444 588899999999999873
Q ss_pred ccccHHHh-hcCC----CCcEEEEEeccCCCC-----CCcc-cccccceeeEEecCCCccccccccccccccccccccee
Q 037935 613 SNASLDEL-MHLQ----RLTTLEIDVEDDSIL-----PDGL-FTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYI 681 (1085)
Q Consensus 613 ~~~~~~~l-~~L~----~L~~L~l~~~~~~~~-----~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l 681 (1085)
...+..+ ..++ +|++|++++|.+... +..+ .+++|+.|+++.+.- ....+
T Consensus 70 -~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i------------------~~~~~ 130 (461)
T 1z7x_W 70 -DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL------------------GDAGL 130 (461)
T ss_dssp -HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC------------------HHHHH
T ss_pred -hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC------------------chHHH
Confidence 2223333 3355 699999998877632 2222 455566665542210 00000
Q ss_pred ehhhhhhcccccccccccccCCCCC-cccccccccEEEEcCCCCCcccc--chhhHhhcccccEEEeccccchHHHhccC
Q 037935 682 FCIVMALELNAINVDEIWHYNQLPA-MVPCFQSLTRLIVWGCDKLKYIF--SASTIQSLEQLQHLEIRLCKSLQEIISEN 758 (1085)
Q Consensus 682 ~~~~~~~~L~~l~L~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~l~~l~--~~~~l~~l~~L~~L~l~~~~~l~~i~~~~ 758 (1085)
.. +.. .....++|++|++++|....... -...+..+++|++|++++|. +.......
T Consensus 131 ~~--------------------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~ 189 (461)
T 1z7x_W 131 QL--------------------LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRV 189 (461)
T ss_dssp HH--------------------HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHH
T ss_pred HH--------------------HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHH
Confidence 00 000 01123457777776664322110 02234556677777776665 22211100
Q ss_pred CcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCcc
Q 037935 759 RTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNL 838 (1085)
Q Consensus 759 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L 838 (1085)
.... .....++|++|++++ |..-.. + ...+......+++|
T Consensus 190 l~~~--l~~~~~~L~~L~L~~--------------------------n~l~~~-~-----------~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 190 LCQG--LKDSPCQLEALKLES--------------------------CGVTSD-N-----------CRDLCGIVASKASL 229 (461)
T ss_dssp HHHH--HHHSCCCCCEEECTT--------------------------SCCBTT-H-----------HHHHHHHHHHCTTC
T ss_pred HHHH--HhcCCCCceEEEccC--------------------------CCCcHH-H-----------HHHHHHHHHhCCCc
Confidence 0000 000123455555544 421110 0 00011122345777
Q ss_pred ceeeeccCCceeeecccCCc---CccCCceEEEecCCcccccc----hhHHhhccccceEEeecccccEEEecCCccccc
Q 037935 839 EGLALSGKDITMILQDDFPQ---HLFGSLKQLRVGDDDLACFP----LDLLERFHNLEFLYLSDCSYEVVFSNEGYLETH 911 (1085)
Q Consensus 839 ~~L~ls~n~l~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 911 (1085)
++|++++|.+++.....+.. ..+++|++|++++|.++... ...+..+++|+.|++++|.+...... .+....
T Consensus 230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l 308 (461)
T 1z7x_W 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR-LLCETL 308 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH-HHHHHH
T ss_pred cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH-HHHHHh
Confidence 77777777765432111110 11567777777777776632 23345677777777777775432100 000000
Q ss_pred cccccccceeccCCcccccccccCCCchhhhHhhhhceeeeeccccccccCCCCccc-----ccCccEEEeccccCcccc
Q 037935 912 ARKLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVLHCQNLLSLLPSSSVS-----FRNLTRLETFACKKLMNL 986 (1085)
Q Consensus 912 l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~-----l~~L~~L~l~~c~~L~~l 986 (1085)
....++|+.|++++|. ++.............+++|+.|++++| .+....+..+.. .++|++|++++|. +++.
T Consensus 309 ~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~ 385 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDS 385 (461)
T ss_dssp TSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHH
T ss_pred ccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChh
Confidence 0112467777777653 332211001111123466777777766 333221111111 4577777777763 5531
Q ss_pred ---cchhhhhhcccccEEEEcCCc
Q 037935 987 ---LTSSKAKSLERLVSLRIFGCP 1007 (1085)
Q Consensus 987 ---~~~~~~~~l~~L~~L~i~~c~ 1007 (1085)
..+..+..+++|++|++++|+
T Consensus 386 ~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 386 SCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHHCCCCCEEECCSSS
T ss_pred hHHHHHHHHHhCCCccEEECCCCC
Confidence 013344567777788877764
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=1.1e-18 Score=191.81 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=86.5
Q ss_pred CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccC
Q 037935 512 ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRL 591 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L 591 (1085)
.+++|+.|++++|. +..+++..|.++++|++|+|++|.++.++. ++.+++|++|++++| .++.+|. +++|
T Consensus 32 ~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~-----~~~L 101 (317)
T 3o53_A 32 SAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV-----GPSI 101 (317)
T ss_dssp TGGGCSEEECTTSC---CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEE-----CTTC
T ss_pred cCCCCCEEECcCCc---cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccC-----CCCc
Confidence 56799999999997 677887889999999999999999988775 999999999999999 8888764 4899
Q ss_pred CEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCC
Q 037935 592 EELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSIL 639 (1085)
Q Consensus 592 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 639 (1085)
++|++++|.+...+. ..+++|++|++++|.+..+
T Consensus 102 ~~L~l~~n~l~~~~~--------------~~~~~L~~L~l~~N~l~~~ 135 (317)
T 3o53_A 102 ETLHAANNNISRVSC--------------SRGQGKKNIYLANNKITML 135 (317)
T ss_dssp CEEECCSSCCSEEEE--------------CCCSSCEEEECCSSCCCSG
T ss_pred CEEECCCCccCCcCc--------------cccCCCCEEECCCCCCCCc
Confidence 999999999843221 2357788888888876643
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=2e-17 Score=181.10 Aligned_cols=143 Identities=16% Similarity=0.138 Sum_probs=115.0
Q ss_pred ecCccccCCCccccccceEEEeeccCccccccc--CCCCCcceeeeccCCCcccccc---ChhhhcCCCcceEEEecCCc
Q 037935 478 RNDAVWEWPDGDALKKCYAISLLNSSIHEVSLE--FECPQLEFLHIDPKITFAELNI---PDNFFKGMKKLRVVDLTRVR 552 (1085)
Q Consensus 478 ~~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l---~~~~~~~l~~Lr~L~Ls~~~ 552 (1085)
.+..+...|. ..+.++++|++++|.+..++.. ..+++|++|++.+|. +..+ +.. +..+++|++|++++|.
T Consensus 15 ~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~-~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG---LSFKGCCSQS-DFGTTSLKYLDLSFNG 89 (306)
T ss_dssp CSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---CCEEEEEEHH-HHSCSCCCEEECCSCS
T ss_pred CCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc---cCcccCcccc-cccccccCEEECCCCc
Confidence 3344444443 4567899999999999999874 389999999999987 3333 443 5679999999999999
Q ss_pred ccCCchhhhccccccEEeccCcccccccch-hhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEE
Q 037935 553 LFSLPSSIGQLTKLRMLDLTDCLQLKFIVP-NILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEI 631 (1085)
Q Consensus 553 i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~-~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 631 (1085)
+..+|..+..+++|++|++++| .++.++. ..+.++++|++|++++|.+. ...+..+..+++|++|++
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTR-----------VAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCE-----------ECSTTTTTTCTTCCEEEC
T ss_pred cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCC-----------ccchhhcccCcCCCEEEC
Confidence 9999999999999999999999 9998876 55799999999999999873 333455777888888888
Q ss_pred EeccCC
Q 037935 632 DVEDDS 637 (1085)
Q Consensus 632 ~~~~~~ 637 (1085)
++|.+.
T Consensus 158 ~~n~l~ 163 (306)
T 2z66_A 158 AGNSFQ 163 (306)
T ss_dssp TTCEEG
T ss_pred CCCccc
Confidence 777543
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=1.3e-17 Score=180.45 Aligned_cols=219 Identities=17% Similarity=0.194 Sum_probs=104.4
Q ss_pred EEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccccEEeccCc
Q 037935 496 AISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDLTDC 574 (1085)
Q Consensus 496 ~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~~ 574 (1085)
.++..++.+..+|... .++|++|++.+|. +..++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 15 ~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~---i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI-PAASQRIFLHGNR---ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EEECCSSCCSSCCTTC-CTTCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCcCCcccCCcCC-CCCceEEEeeCCc---CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 3444444444444332 2455555555554 3444444455555555555555555544 344555555555555555
Q ss_pred ccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc--cccccceee
Q 037935 575 LQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL--FTKKLERFD 652 (1085)
Q Consensus 575 ~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~ 652 (1085)
..++.+++..+.++++|++|++++|.+. ...+..+.++++|++|++++|.+..++... .+++|+.|+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQ-----------ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCC-----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCC-----------EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 2255544333455555555555555542 112233444555555555555555444332 344455544
Q ss_pred EEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchh
Q 037935 653 ISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSAS 732 (1085)
Q Consensus 653 l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~ 732 (1085)
++.+. +.......+..+..|+.+++..+......|.++..+++|+.|++++|.. ..+ +..
T Consensus 160 l~~n~------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~ 219 (285)
T 1ozn_A 160 LHGNR------------------ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SAL-PTE 219 (285)
T ss_dssp CCSSC------------------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCC-CHH
T ss_pred CCCCc------------------ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC-CcC-CHH
Confidence 43211 0000000011112223333333333334456666777777777777643 333 234
Q ss_pred hHhhcccccEEEecccc
Q 037935 733 TIQSLEQLQHLEIRLCK 749 (1085)
Q Consensus 733 ~l~~l~~L~~L~l~~~~ 749 (1085)
.+..+++|+.|++++|+
T Consensus 220 ~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp HHTTCTTCCEEECCSSC
T ss_pred HcccCcccCEEeccCCC
Confidence 56777777777777775
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=3.4e-16 Score=169.27 Aligned_cols=64 Identities=23% Similarity=0.416 Sum_probs=53.8
Q ss_pred cCCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeeccccc
Q 037935 834 ILPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYE 899 (1085)
Q Consensus 834 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 899 (1085)
.+++|++|++++|.++...+..+.. +++|+.|++++|.++.++...+..+++|+.|++++|++.
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHPHAFRD--LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CccccCEEECCCCcccccCHhHccC--cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 3678888899998888877766665 789999999999999988888888999999999999854
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=2e-16 Score=170.26 Aligned_cols=57 Identities=23% Similarity=0.434 Sum_probs=43.8
Q ss_pred eeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeeccccc
Q 037935 840 GLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYE 899 (1085)
Q Consensus 840 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 899 (1085)
.|++++|.++.+.+..+.. .+|++|++++|.++.++...+..+++|+.|++++|++.
T Consensus 181 ~L~ls~n~l~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAFKE---IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EEECCSSCCCEECTTSSCS---CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred eeecCCCcccccCccccCC---CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 5677777777766655543 47888888888888888777788888899999888854
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1.1e-17 Score=183.24 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=39.7
Q ss_pred CCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeeccccc
Q 037935 835 LPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYE 899 (1085)
Q Consensus 835 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 899 (1085)
+++|++|++++|.++.++.. + +++|++|++++|+++.+|. +..+++|+.|++++|+++
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~-~----~~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKG-L----PAKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSS-C----CSEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred cCCCCEEECCCCccChhhhh-c----cCCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCC
Confidence 56777777777777644332 1 2577777777777777754 567777777777777754
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.5e-16 Score=185.03 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=29.9
Q ss_pred cceEEEecCCcccCCc-hhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCc
Q 037935 542 KLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSI 601 (1085)
Q Consensus 542 ~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~ 601 (1085)
+|++|+|++|.++.+| ..|+++++|++|+|++| .++..++ ++++++|++|++++|.+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l 92 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYV 92 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcC
Confidence 4555555555555542 34555555555555555 4544443 35555555555555544
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=6.7e-16 Score=165.21 Aligned_cols=197 Identities=19% Similarity=0.264 Sum_probs=149.5
Q ss_pred cceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchh-hhccccccEEec
Q 037935 493 KCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSS-IGQLTKLRMLDL 571 (1085)
Q Consensus 493 ~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L 571 (1085)
..+.++++++.+..+|..+. ++++.|++.+|. +..++...|.++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNK---LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSC---CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCC---CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 46788999999998887653 789999999987 6778877799999999999999999998765 488999999999
Q ss_pred cCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc--cccccc
Q 037935 572 TDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL--FTKKLE 649 (1085)
Q Consensus 572 s~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~l~~L~ 649 (1085)
++| .++.+|...|.++++|++|++++|.+. ...+..+..+++|++|++++|.+..++... .+++|+
T Consensus 93 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 93 TDN-KLQALPIGVFDQLVNLAELRLDRNQLK-----------SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp CSS-CCCCCCTTTTTTCSSCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCC-cCCcCCHhHcccccCCCEEECCCCccC-----------eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 999 899999888899999999999999884 233445788999999999999888877653 566666
Q ss_pred eeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCcccc
Q 037935 650 RFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIF 729 (1085)
Q Consensus 650 ~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~ 729 (1085)
.|+++.+. .....+..+..+++|+.|++++|. +..++
T Consensus 161 ~L~L~~n~------------------------------------------l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 197 (270)
T 2o6q_A 161 ELRLYNNQ------------------------------------------LKRVPEGAFDKLTELKTLKLDNNQ-LKRVP 197 (270)
T ss_dssp EEECCSSC------------------------------------------CSCCCTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred eeEecCCc------------------------------------------CcEeChhHhccCCCcCEEECCCCc-CCcCC
Confidence 66654221 111122345566777788887763 44442
Q ss_pred chhhHhhcccccEEEecccc
Q 037935 730 SASTIQSLEQLQHLEIRLCK 749 (1085)
Q Consensus 730 ~~~~l~~l~~L~~L~l~~~~ 749 (1085)
...+..+++|+.|++++|+
T Consensus 198 -~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 198 -EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -TTTTTTCTTCCEEECCSSC
T ss_pred -HHHhccccCCCEEEecCCC
Confidence 3446677777777777765
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=4e-16 Score=181.53 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=62.6
Q ss_pred CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccC
Q 037935 512 ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRL 591 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L 591 (1085)
.+++|++|++++|. +..+++..|.++++|++|+|++|.++..++ ++.+++|++|+|++| .++.+|. .++|
T Consensus 32 ~~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~-----~~~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV-----GPSI 101 (487)
T ss_dssp TGGGCCEEECCSSC---CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE-----CTTC
T ss_pred cCCCccEEEeeCCc---CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC-----CCCc
Confidence 34578888888886 566776678888888888888888877654 788888888888888 7877764 2678
Q ss_pred CEEeccCCCcc
Q 037935 592 EELYMGSCSIK 602 (1085)
Q Consensus 592 ~~L~L~~~~~~ 602 (1085)
++|++++|.+.
T Consensus 102 ~~L~L~~N~l~ 112 (487)
T 3oja_A 102 ETLHAANNNIS 112 (487)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECcCCcCC
Confidence 88888888773
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=1.9e-15 Score=161.78 Aligned_cols=62 Identities=21% Similarity=0.442 Sum_probs=40.4
Q ss_pred CCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccc
Q 037935 835 LPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSY 898 (1085)
Q Consensus 835 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 898 (1085)
+++|++|++++|.++.+++..|.. +++|++|++++|.++.++...+..+++|+.|++++|++
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDK--LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTT--CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcccceeEecCCcCcEeChhHhcc--CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 455666666666655555544443 56677777777777777666666777777777777764
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=2.2e-15 Score=164.27 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=38.7
Q ss_pred CCccceeeeccCCceeeecccCCcCccCCceEEEecCCcccccchhHHhhccccceEEeecccccE
Q 037935 835 LPNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYEV 900 (1085)
Q Consensus 835 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 900 (1085)
+++|+.|++++|.+++..+ +.. +++|++|++++|.++.+++ +..+++|+.|++++|+++.
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~--l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LAS--LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGG--CTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEECCCCccCcChh--hcC--CCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 4556666666666555433 222 5677777777777776663 5677788888888877654
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=2.4e-15 Score=157.72 Aligned_cols=202 Identities=15% Similarity=0.128 Sum_probs=155.1
Q ss_pred CccceeeeccCCceeeecccCCcCccCCceEEEecCCc-ccccchhHHhhccccceEEeec-ccccEEEecCCccccccc
Q 037935 836 PNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVGDDD-LACFPLDLLERFHNLEFLYLSD-CSYEVVFSNEGYLETHAR 913 (1085)
Q Consensus 836 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~l~ 913 (1085)
++|++|++++|.++.+++..|.. +++|++|++++|. ++.++...|..+++|+.|++++ |.++.+++ ..+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~--l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~------~~f~ 102 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSN--LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP------DALK 102 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTT--CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT------TSEE
T ss_pred CcccEEEEeCCcceEECHHHccC--CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH------HHhC
Confidence 58999999999999888777765 7999999999886 8998887888899999999998 77887642 3456
Q ss_pred cccccceeccCCcccccccccCCCchhhhHhhhhc---eeeeeccccccccCCCCcccccCcc-EEEeccccCcccccch
Q 037935 914 KLALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQ---ILRVLHCQNLLSLLPSSSVSFRNLT-RLETFACKKLMNLLTS 989 (1085)
Q Consensus 914 ~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~---~L~i~~c~~l~~~~~~~l~~l~~L~-~L~l~~c~~L~~l~~~ 989 (1085)
.+++|+.|++++ +.++.++. + ..+++|+ .|++++|+.+..+++..+..+++|+ +|+++++ +++.++ .
T Consensus 103 ~l~~L~~L~l~~-n~l~~lp~--~----~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~-~ 173 (239)
T 2xwt_C 103 ELPLLKFLGIFN-TGLKMFPD--L----TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQ-G 173 (239)
T ss_dssp CCTTCCEEEEEE-ECCCSCCC--C----TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEEC-T
T ss_pred CCCCCCEEeCCC-CCCccccc--c----ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccC-H
Confidence 688899999988 45666654 1 2456676 9999998788888887788899999 9999875 577663 3
Q ss_pred hhhhhcccccEEEEcCCcccccccccccccccccccceee-ccccccccccccccceecCCCccccCCCcCceeeccCCC
Q 037935 990 SKAKSLERLVSLRIFGCPAMTEVIISDEDETANLKEEIVF-SKLSALSLFDLDSLTSFSSGNYAFKLPSLQDLWVIGCPK 1068 (1085)
Q Consensus 990 ~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 1068 (1085)
..+.. ++|++|++++|++++.++... ...+ ++|+.|++++ +.++.+|.. .+++|+.|++.+|+.
T Consensus 174 ~~~~~-~~L~~L~L~~n~~l~~i~~~~---------~~~l~~~L~~L~l~~-N~l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 174 YAFNG-TKLDAVYLNKNKYLTVIDKDA---------FGGVYSGPSLLDVSQ-TSVTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTT-CEEEEEECTTCTTCCEECTTT---------TTTCSBCCSEEECTT-CCCCCCCCT----TCTTCSEEECTTC--
T ss_pred hhcCC-CCCCEEEcCCCCCcccCCHHH---------hhccccCCcEEECCC-CccccCChh----HhccCceeeccCccC
Confidence 33444 789999999987677764411 1125 8899999998 457888765 478999999999876
Q ss_pred c
Q 037935 1069 M 1069 (1085)
Q Consensus 1069 l 1069 (1085)
|
T Consensus 239 l 239 (239)
T 2xwt_C 239 L 239 (239)
T ss_dssp -
T ss_pred C
Confidence 4
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=2.7e-15 Score=167.12 Aligned_cols=100 Identities=19% Similarity=0.129 Sum_probs=74.5
Q ss_pred CccceeeeccCCceeeecccCCcCccCCceEEEec-CCcccccchhHHhhccccceEEeecccccEEEecCCcccccccc
Q 037935 836 PNLEGLALSGKDITMILQDDFPQHLFGSLKQLRVG-DDDLACFPLDLLERFHNLEFLYLSDCSYEVVFSNEGYLETHARK 914 (1085)
Q Consensus 836 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~l~~ 914 (1085)
..++.|++++|.++.++...|. ..+|++|+++ +|.++.+|...|..+++|+.|++++|+++.++.. .
T Consensus 154 ~~l~~L~L~~N~i~~i~~~~f~---~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---------~ 221 (350)
T 4ay9_X 154 FESVILWLNKNGIQEIHNSAFN---GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---------G 221 (350)
T ss_dssp SSCEEEECCSSCCCEECTTSST---TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---------S
T ss_pred hhhhhhccccccccCCChhhcc---ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---------h
Confidence 5688899999999988877665 4789999997 7899999988899999999999999998876531 1
Q ss_pred ccccceeccCCcccccccccCCCchhhhHhhhhceeeee
Q 037935 915 LALIKRLNLTRLNHLQQLWKHDSKELDFIFQHLQILRVL 953 (1085)
Q Consensus 915 l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~L~~L~i~ 953 (1085)
+.+|+.|.+.++++++.++.- ..+++|+.+++.
T Consensus 222 ~~~L~~L~~l~~~~l~~lP~l------~~l~~L~~l~l~ 254 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLPTL------EKLVALMEASLT 254 (350)
T ss_dssp CTTCCEEECTTCTTCCCCCCT------TTCCSCCEEECS
T ss_pred hccchHhhhccCCCcCcCCCc------hhCcChhhCcCC
Confidence 345666666666666666531 135566666654
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.7e-15 Score=158.97 Aligned_cols=134 Identities=19% Similarity=0.208 Sum_probs=94.2
Q ss_pred ccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCc-ccCCch-hhhccccccEEeccC-cccc
Q 037935 501 NSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVR-LFSLPS-SIGQLTKLRMLDLTD-CLQL 577 (1085)
Q Consensus 501 ~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~-i~~lp~-~i~~L~~L~~L~Ls~-~~~l 577 (1085)
...+..+|. + .++|+.|++.+|. +..++...|.++++|++|++++|. ++.+|. .+.++++|++|++++ | .+
T Consensus 20 c~~l~~ip~-~-~~~l~~L~l~~n~---l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l 93 (239)
T 2xwt_C 20 CKDIQRIPS-L-PPSTQTLKLIETH---LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NL 93 (239)
T ss_dssp ECSCSSCCC-C-CTTCCEEEEESCC---CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TC
T ss_pred ccCccccCC-C-CCcccEEEEeCCc---ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-Ce
Confidence 334666666 2 3578888888876 667777778888888888888886 777764 677888888888887 6 88
Q ss_pred cccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCc---EEEEEec-cCCCCCCcc--cccccc-e
Q 037935 578 KFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLT---TLEIDVE-DDSILPDGL--FTKKLE-R 650 (1085)
Q Consensus 578 ~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~---~L~l~~~-~~~~~~~~~--~l~~L~-~ 650 (1085)
+.+|+..|.++++|++|++++|.+... +. +..+++|+ +|++++| .+..++... .+++|+ .
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n~l~~l------------p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~ 160 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNTGLKMF------------PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEECCCSC------------CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE
T ss_pred eEcCHHHhCCCCCCCEEeCCCCCCccc------------cc-cccccccccccEEECCCCcchhhcCcccccchhcceeE
Confidence 888877678888888888888876321 11 45555665 8888887 776666542 444555 5
Q ss_pred eeE
Q 037935 651 FDI 653 (1085)
Q Consensus 651 L~l 653 (1085)
|++
T Consensus 161 L~l 163 (239)
T 2xwt_C 161 LKL 163 (239)
T ss_dssp EEC
T ss_pred EEc
Confidence 544
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=4.2e-15 Score=159.83 Aligned_cols=205 Identities=15% Similarity=0.115 Sum_probs=130.6
Q ss_pred ccccceEEEeeccCcccccc--cCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccc
Q 037935 490 ALKKCYAISLLNSSIHEVSL--EFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKL 566 (1085)
Q Consensus 490 ~~~~~r~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L 566 (1085)
.+..+++|++++|.+..++. ...+++|++|++.+|. +..++...|.++++|++|++++|.++.++ ..+.++++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc---CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 34567777887777777664 2367777788777775 55666666777777888888877777754 567777778
Q ss_pred cEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc--c
Q 037935 567 RMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL--F 644 (1085)
Q Consensus 567 ~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~ 644 (1085)
++|++++| .+..++...++++++|++|++++|.+.. ...+..+.++++|++|++++|.+..++... .
T Consensus 103 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 103 QKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS----------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCC----------CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred cEEECCCC-CccccCchhcccCCCCCEEECcCCccce----------ecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 88888777 7777766446777778888877777631 113456677777777777777776655432 3
Q ss_pred ccccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCC
Q 037935 645 TKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDK 724 (1085)
Q Consensus 645 l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 724 (1085)
+.+|+.+.+ .+++..+.... +|.......+|+.|++++|.
T Consensus 172 l~~L~~l~l--------------------------------------~L~ls~n~l~~-~~~~~~~~~~L~~L~L~~n~- 211 (276)
T 2z62_A 172 LHQMPLLNL--------------------------------------SLDLSLNPMNF-IQPGAFKEIRLKELALDTNQ- 211 (276)
T ss_dssp HHTCTTCCE--------------------------------------EEECCSSCCCE-ECTTSSCSCCEEEEECCSSC-
T ss_pred hhhccccce--------------------------------------eeecCCCcccc-cCccccCCCcccEEECCCCc-
Confidence 344442211 11122221111 22222233478888888865
Q ss_pred CccccchhhHhhcccccEEEecccc
Q 037935 725 LKYIFSASTIQSLEQLQHLEIRLCK 749 (1085)
Q Consensus 725 l~~l~~~~~l~~l~~L~~L~l~~~~ 749 (1085)
++.++ ...+..+++|+.|++++|+
T Consensus 212 l~~~~-~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 212 LKSVP-DGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSCCC-TTTTTTCCSCCEEECCSSC
T ss_pred eeecC-HhHhcccccccEEEccCCc
Confidence 45543 3456788888888888776
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=1e-14 Score=158.99 Aligned_cols=143 Identities=21% Similarity=0.252 Sum_probs=110.7
Q ss_pred ccccceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEE
Q 037935 490 ALKKCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRML 569 (1085)
Q Consensus 490 ~~~~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L 569 (1085)
...++++|++.++.+..++....+++|++|++++|. +..++. |.++++|++|++++|.++.+| .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~---i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ---ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCc---CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 355788899988888888766678889999998886 566665 788889999999999888876 68888999999
Q ss_pred eccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcccccccc
Q 037935 570 DLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLE 649 (1085)
Q Consensus 570 ~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~ 649 (1085)
++++| .++.+|. +.++++|++|++++|.+.. ...+..+++|++|++++|.+..++.-..+++|+
T Consensus 113 ~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 176 (308)
T 1h6u_A 113 DLTST-QITDVTP--LAGLSNLQVLYLDLNQITN-------------ISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT 176 (308)
T ss_dssp ECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCC-------------CGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCC
T ss_pred ECCCC-CCCCchh--hcCCCCCCEEECCCCccCc-------------CccccCCCCccEEEccCCcCCCChhhcCCCCCC
Confidence 99998 8888876 6888999999999888731 122778888888888888877665522455555
Q ss_pred eeeEE
Q 037935 650 RFDIS 654 (1085)
Q Consensus 650 ~L~l~ 654 (1085)
.|+++
T Consensus 177 ~L~l~ 181 (308)
T 1h6u_A 177 TLKAD 181 (308)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 55553
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=6.1e-16 Score=172.00 Aligned_cols=154 Identities=13% Similarity=0.149 Sum_probs=109.5
Q ss_pred CCcceeeeccCCCccccccChhhhcCC--CcceEEEecCCcccCCchhhhccccccEEeccCcccccc--cchhhhhccc
Q 037935 514 PQLEFLHIDPKITFAELNIPDNFFKGM--KKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKF--IVPNILSSFT 589 (1085)
Q Consensus 514 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l--~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~--lp~~~~~~L~ 589 (1085)
..++.+++.++.. .+..+..+ +++++|++++|.+...+..+.++++|++|++++| .+.. +|. .+.+++
T Consensus 47 ~~~~~l~l~~~~~------~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~-~~~~~~ 118 (336)
T 2ast_B 47 SLWQTLDLTGKNL------HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHG-ILSQCS 118 (336)
T ss_dssp TTSSEEECTTCBC------CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTC-EECHHHHHH-HHTTBC
T ss_pred hhheeeccccccC------CHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCC-CcCHHHHHH-HHhhCC
Confidence 3477888887652 24556666 8899999999998887767788999999999998 6764 444 458899
Q ss_pred cCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEec-cCCCCCCcccccccceeeEEecCCCccccccccc
Q 037935 590 RLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVE-DDSILPDGLFTKKLERFDISIGDGSFDSTKIIGN 668 (1085)
Q Consensus 590 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 668 (1085)
+|++|++++|.+ ....+..+.++++|++|++++| .++..
T Consensus 119 ~L~~L~L~~~~l-----------~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------------- 158 (336)
T 2ast_B 119 KLQNLSLEGLRL-----------SDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------------- 158 (336)
T ss_dssp CCSEEECTTCBC-----------CHHHHHHHTTCTTCSEEECTTCBSCCHH-----------------------------
T ss_pred CCCEEeCcCccc-----------CHHHHHHHhcCCCCCEEECCCCCCCCHH-----------------------------
Confidence 999999999976 3445667788888888888776 22210
Q ss_pred ccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchhhHhhcc-cccEEEecc
Q 037935 669 DWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLE-QLQHLEIRL 747 (1085)
Q Consensus 669 ~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~-~L~~L~l~~ 747 (1085)
.+|..+..+++|++|++++|..++.......+..++ +|++|++++
T Consensus 159 ----------------------------------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 159 ----------------------------------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp ----------------------------------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred ----------------------------------HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 011123456788888888884554321134577888 888888888
Q ss_pred cc
Q 037935 748 CK 749 (1085)
Q Consensus 748 ~~ 749 (1085)
|.
T Consensus 205 ~~ 206 (336)
T 2ast_B 205 YR 206 (336)
T ss_dssp CG
T ss_pred Cc
Confidence 85
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=8.2e-15 Score=157.99 Aligned_cols=196 Identities=18% Similarity=0.191 Sum_probs=143.3
Q ss_pred cccceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEe
Q 037935 491 LKKCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLD 570 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~ 570 (1085)
..+++.+++.++.++.+|..+. ++++.|++++|. +..++...|.++++|++|+|++|.++.+|.. +.+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENL---LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSC---CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCc---CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 4467888888888888887653 789999999887 6667767788999999999999999888754 7889999999
Q ss_pred ccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc--ccccc
Q 037935 571 LTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL--FTKKL 648 (1085)
Q Consensus 571 Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~l~~L 648 (1085)
+++| .++.+|.. +.++++|++|++++|.+.. ..+..+..+++|++|++++|.+..++... .+++|
T Consensus 84 Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~-----------l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 84 LSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTS-----------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCC-----------CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCC-cCCcCchh-hccCCCCCEEECCCCcCcc-----------cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 9999 88888876 4889999999999998842 23345788889999999999888777654 45666
Q ss_pred ceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccc
Q 037935 649 ERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYI 728 (1085)
Q Consensus 649 ~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l 728 (1085)
+.|+++.+. .....+..+..+++|+.|+|++|. ++.+
T Consensus 151 ~~L~L~~N~------------------------------------------l~~l~~~~~~~l~~L~~L~L~~N~-l~~i 187 (290)
T 1p9a_G 151 EKLSLANNN------------------------------------------LTELPAGLLNGLENLDTLLLQENS-LYTI 187 (290)
T ss_dssp CEEECTTSC------------------------------------------CSCCCTTTTTTCTTCCEEECCSSC-CCCC
T ss_pred CEEECCCCc------------------------------------------CCccCHHHhcCcCCCCEEECCCCc-CCcc
Confidence 666553221 111112234556777777777653 4444
Q ss_pred cchhhHhhcccccEEEecccc
Q 037935 729 FSASTIQSLEQLQHLEIRLCK 749 (1085)
Q Consensus 729 ~~~~~l~~l~~L~~L~l~~~~ 749 (1085)
|. .+..+++|+.|.+.+|+
T Consensus 188 p~--~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 188 PK--GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CT--TTTTTCCCSEEECCSCC
T ss_pred Ch--hhcccccCCeEEeCCCC
Confidence 32 35556677777777665
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=9.4e-15 Score=157.49 Aligned_cols=203 Identities=22% Similarity=0.267 Sum_probs=128.8
Q ss_pred hcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCcccccc
Q 037935 537 FKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNAS 616 (1085)
Q Consensus 537 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 616 (1085)
+.++++|+.+++++++++.+|..+. +++++|++++| .++.+++..|.++++|++|++++|.+...+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV---------- 72 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----------
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccC----------
Confidence 5667788888888888888876654 67888888888 7877776667888888888888887632211
Q ss_pred HHHhhcCCCCcEEEEEeccCCCCCCcccccccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccc
Q 037935 617 LDELMHLQRLTTLEIDVEDDSILPDGLFTKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVD 696 (1085)
Q Consensus 617 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~ 696 (1085)
...+++|++|++++|.+..+|.
T Consensus 73 ---~~~l~~L~~L~Ls~N~l~~l~~------------------------------------------------------- 94 (290)
T 1p9a_G 73 ---DGTLPVLGTLDLSHNQLQSLPL------------------------------------------------------- 94 (290)
T ss_dssp ---CSCCTTCCEEECCSSCCSSCCC-------------------------------------------------------
T ss_pred ---CCCCCcCCEEECCCCcCCcCch-------------------------------------------------------
Confidence 1466677777777776554332
Q ss_pred cccccCCCCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEe
Q 037935 697 EIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLK 776 (1085)
Q Consensus 697 ~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~ 776 (1085)
.+..+++|+.|++++|. ++.++ +..+..+++|++|++++|. +.
T Consensus 95 ----------~~~~l~~L~~L~l~~N~-l~~l~-~~~~~~l~~L~~L~L~~N~-l~------------------------ 137 (290)
T 1p9a_G 95 ----------LGQTLPALTVLDVSFNR-LTSLP-LGALRGLGELQELYLKGNE-LK------------------------ 137 (290)
T ss_dssp ----------CTTTCTTCCEEECCSSC-CCCCC-SSTTTTCTTCCEEECTTSC-CC------------------------
T ss_pred ----------hhccCCCCCEEECCCCc-CcccC-HHHHcCCCCCCEEECCCCC-CC------------------------
Confidence 23345667777776653 33332 2345556666666655543 10
Q ss_pred cCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccC
Q 037935 777 LDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDF 856 (1085)
Q Consensus 777 l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 856 (1085)
.+... .+..+++|+.|++++|.++.++...|
T Consensus 138 --------~~~~~-----------------------------------------~~~~l~~L~~L~L~~N~l~~l~~~~~ 168 (290)
T 1p9a_G 138 --------TLPPG-----------------------------------------LLTPTPKLEKLSLANNNLTELPAGLL 168 (290)
T ss_dssp --------CCCTT-----------------------------------------TTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred --------ccChh-----------------------------------------hcccccCCCEEECCCCcCCccCHHHh
Confidence 00000 01225667777777777776665555
Q ss_pred CcCccCCceEEEecCCcccccchhHHhhccccceEEeeccccc
Q 037935 857 PQHLFGSLKQLRVGDDDLACFPLDLLERFHNLEFLYLSDCSYE 899 (1085)
Q Consensus 857 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 899 (1085)
.. +++|+.|++++|+++.+|...+ .+++|+.|++++|++.
T Consensus 169 ~~--l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 169 NG--LENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TT--CTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBC
T ss_pred cC--cCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCcc
Confidence 44 6777777777777777775543 4567888888877743
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=1.7e-14 Score=152.41 Aligned_cols=133 Identities=22% Similarity=0.330 Sum_probs=110.3
Q ss_pred cceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEec
Q 037935 493 KCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDL 571 (1085)
Q Consensus 493 ~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L 571 (1085)
..++++++++.+..+|..+. ++++.|++.+|. +..++...|.++++|++|+|++|.++.++ ..+.++++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTG---LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCC---cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35678888888998887664 789999999987 67777777899999999999999998875 45789999999999
Q ss_pred cCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCC
Q 037935 572 TDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPD 641 (1085)
Q Consensus 572 s~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 641 (1085)
++| .++.+|+..|+++++|++|++++|.+.. .....+..+++|++|++++|.+..++.
T Consensus 91 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 91 ANN-QLASLPLGVFDHLTQLDKLYLGGNQLKS-----------LPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp TTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCC-cccccChhHhcccCCCCEEEcCCCcCCC-----------cChhHhccCCcccEEECcCCcCCccCH
Confidence 999 8999998888999999999999998842 223346788899999999888776554
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=1.3e-14 Score=161.66 Aligned_cols=107 Identities=14% Similarity=0.251 Sum_probs=64.7
Q ss_pred ceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCch-hhhccccccEEeccCcccc-cccchhhhhccccCCE-
Q 037935 517 EFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKLRMLDLTDCLQL-KFIVPNILSSFTRLEE- 593 (1085)
Q Consensus 517 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~Ls~~~~l-~~lp~~~~~~L~~L~~- 593 (1085)
++++.+++. ...+|.++ .+++++|+|++|+|+.+|. .|.++++|++|+|++| .+ +.+|.+.|.++++|++
T Consensus 12 ~~v~C~~~~---Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESK---VTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTT---CCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCC---CCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhh
Confidence 344444444 45566543 2456777777777777764 4677777777777777 44 4566666667776665
Q ss_pred EeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCC
Q 037935 594 LYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPD 641 (1085)
Q Consensus 594 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 641 (1085)
+.+.+|.+.. ..+..+..+++|++|++++|.+..++.
T Consensus 85 l~~~~N~l~~-----------l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 85 RIEKANNLLY-----------INPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp EEEEETTCCE-----------ECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred hcccCCcccc-----------cCchhhhhccccccccccccccccCCc
Confidence 3444555532 223446677777777777777665554
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=1.7e-15 Score=168.36 Aligned_cols=177 Identities=18% Similarity=0.152 Sum_probs=124.5
Q ss_pred cceEEEeeccCcccccccC-CC--CCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccC--Cchhhhcccccc
Q 037935 493 KCYAISLLNSSIHEVSLEF-EC--PQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFS--LPSSIGQLTKLR 567 (1085)
Q Consensus 493 ~~r~Lsl~~~~~~~l~~~~-~~--~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~ 567 (1085)
..++++++++.+. +..+ .+ ++++.|.+.++. ....+.. +.++++|++|++++|.++. +|..+..+++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~---l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF---MDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE---ECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCcc---ccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 3677888877654 2111 33 789999998886 4444444 4468999999999998875 788889999999
Q ss_pred EEeccCcccccccchhhhhccccCCEEeccCC-CcchhhcccCCcccc-ccHHHhhcCCCCcEEEEEec-cCCCCCCccc
Q 037935 568 MLDLTDCLQLKFIVPNILSSFTRLEELYMGSC-SIKWEVRKGNSERSN-ASLDELMHLQRLTTLEIDVE-DDSILPDGLF 644 (1085)
Q Consensus 568 ~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~-~~~~~~~~~~~~~~~-~~~~~l~~L~~L~~L~l~~~-~~~~~~~~~~ 644 (1085)
+|++++| .++......++++++|++|++++| .+ .. ..+..+.++++|++|++++| .+...
T Consensus 122 ~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l-----------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~----- 184 (336)
T 2ast_B 122 NLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGF-----------SEFALQTLLSSCSRLDELNLSWCFDFTEK----- 184 (336)
T ss_dssp EEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSC-----------CHHHHHHHHHHCTTCCEEECCCCTTCCHH-----
T ss_pred EEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCC-----------CHHHHHHHHhcCCCCCEEcCCCCCCcChH-----
Confidence 9999999 777443344688999999999999 44 22 23445788999999999887 54310
Q ss_pred ccccceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccc-cccEEEEcCCC
Q 037935 645 TKKLERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQ-SLTRLIVWGCD 723 (1085)
Q Consensus 645 l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~-~L~~L~L~~~~ 723 (1085)
.+|..+..++ +|++|++++|.
T Consensus 185 ----------------------------------------------------------~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 185 ----------------------------------------------------------HVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp ----------------------------------------------------------HHHHHHHHSCTTCCEEECCSCG
T ss_pred ----------------------------------------------------------HHHHHHHhcccCCCEEEeCCCc
Confidence 0112244677 99999999985
Q ss_pred -CCccccchhhHhhcccccEEEeccccc
Q 037935 724 -KLKYIFSASTIQSLEQLQHLEIRLCKS 750 (1085)
Q Consensus 724 -~l~~l~~~~~l~~l~~L~~L~l~~~~~ 750 (1085)
.+....-+..+..+++|+.|++++|..
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 333111123567888888888888863
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=1.1e-15 Score=167.43 Aligned_cols=150 Identities=15% Similarity=0.169 Sum_probs=100.4
Q ss_pred cceEEEeeccCccc--ccccC--------CCCCcceeeeccCCCccccccChhhh-cCCCcceEEEecCCcccCCchhhh
Q 037935 493 KCYAISLLNSSIHE--VSLEF--------ECPQLEFLHIDPKITFAELNIPDNFF-KGMKKLRVVDLTRVRLFSLPSSIG 561 (1085)
Q Consensus 493 ~~r~Lsl~~~~~~~--l~~~~--------~~~~Lr~L~l~~~~~~~~~~l~~~~~-~~l~~Lr~L~Ls~~~i~~lp~~i~ 561 (1085)
.+++|+++++.+.. ++... .+++|++|++++|.. ...+|..+| ..+++|++|+|++|.++.+|..++
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 141 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV--TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA 141 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC--BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc--cchhHHHHHHhcCCCccEEEccCCCCcchhHHHH
Confidence 36666666666643 23222 477888888887763 234565543 778888888888888887777777
Q ss_pred cc-----ccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHh--hcCCCCcEEEEEec
Q 037935 562 QL-----TKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDEL--MHLQRLTTLEIDVE 634 (1085)
Q Consensus 562 ~L-----~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~~L~l~~~ 634 (1085)
.+ ++|++|++++| .+..+++..|+++++|++|++++|.+.... ..+..+ ..+++|++|++++|
T Consensus 142 ~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 142 ELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGER---------GLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp HHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHH---------HHHHHSCTTSCTTCCEEECTTS
T ss_pred HHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcch---------HHHHHHHhccCCCCCEEECCCC
Confidence 77 78888888888 788777666688888888888888753110 012333 67788888888888
Q ss_pred cCCCCCCc---c--cccccceeeEE
Q 037935 635 DDSILPDG---L--FTKKLERFDIS 654 (1085)
Q Consensus 635 ~~~~~~~~---~--~l~~L~~L~l~ 654 (1085)
.+..++.. + .+++|+.|+++
T Consensus 212 ~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 212 GMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp CCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred cCcchHHHHHHHHhcCCCCCEEECC
Confidence 77644322 1 34566666664
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=9.5e-15 Score=156.34 Aligned_cols=147 Identities=24% Similarity=0.306 Sum_probs=105.2
Q ss_pred ccccceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCch-hhhccccccE
Q 037935 490 ALKKCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKLRM 568 (1085)
Q Consensus 490 ~~~~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~ 568 (1085)
...+++.+++.++.+..++....+++|++|++.+|. ...++ .+.++++|++|++++|.++.+|. .++++++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~---l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK---LHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC---CCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCC---CCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 455678888888888777766677888888888876 44443 37778888888888888887764 3678888888
Q ss_pred EeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc--ccc
Q 037935 569 LDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL--FTK 646 (1085)
Q Consensus 569 L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~l~ 646 (1085)
|++++| .++.+|+..++++++|++|++++|.+. ...+..+.++++|++|++++|.+..++... .++
T Consensus 114 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 181 (272)
T 3rfs_A 114 LVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQ-----------SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181 (272)
T ss_dssp EECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred EECCCC-cCCccCHHHhccCCCCCEEECCCCccC-----------ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc
Confidence 888888 788888776788888888888888773 222334667788888888888777655432 334
Q ss_pred ccceeeE
Q 037935 647 KLERFDI 653 (1085)
Q Consensus 647 ~L~~L~l 653 (1085)
+|+.|++
T Consensus 182 ~L~~L~L 188 (272)
T 3rfs_A 182 QLKDLRL 188 (272)
T ss_dssp TCCEEEC
T ss_pred cCCEEEC
Confidence 4444443
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=6.1e-15 Score=157.85 Aligned_cols=143 Identities=20% Similarity=0.264 Sum_probs=111.6
Q ss_pred ceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccC
Q 037935 494 CYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTD 573 (1085)
Q Consensus 494 ~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~ 573 (1085)
+..+.+..+.+........+++|+.|.+.++. +..++. +..+++|++|++++|.++.++ .++++++|++|++++
T Consensus 21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~---i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSD---IKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCCEEECTTSC---CCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccccccccccceeeeeeCCCC---cccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 33444444555444444467899999999887 555554 788999999999999999876 789999999999999
Q ss_pred cccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc--ccccccee
Q 037935 574 CLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL--FTKKLERF 651 (1085)
Q Consensus 574 ~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~l~~L~~L 651 (1085)
| .++.+|+..++++++|++|++++|.+. ...+..+..+++|++|++++|.+..++... .+++|+.|
T Consensus 95 n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 95 N-QLQSLPNGVFDKLTNLKELVLVENQLQ-----------SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECTTSCCC-----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred C-ccCccChhHhcCCcCCCEEECCCCcCC-----------ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 9 999999888899999999999999984 233344788999999999999888776643 45555555
Q ss_pred eEE
Q 037935 652 DIS 654 (1085)
Q Consensus 652 ~l~ 654 (1085)
+++
T Consensus 163 ~l~ 165 (272)
T 3rfs_A 163 DLS 165 (272)
T ss_dssp ECC
T ss_pred ECC
Confidence 553
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=9.3e-15 Score=165.62 Aligned_cols=257 Identities=15% Similarity=0.107 Sum_probs=143.1
Q ss_pred cccChhhhcCCCcceEEEecCCcccC-----CchhhhccccccEEeccCcccccc----cchhh------hhccccCCEE
Q 037935 530 LNIPDNFFKGMKKLRVVDLTRVRLFS-----LPSSIGQLTKLRMLDLTDCLQLKF----IVPNI------LSSFTRLEEL 594 (1085)
Q Consensus 530 ~~l~~~~~~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~L~~L~Ls~~~~l~~----lp~~~------~~~L~~L~~L 594 (1085)
..++. .+..+++|++|+|++|.+.. ++..+.++++|++|+|++| .+.. +|.++ +.++++|++|
T Consensus 22 ~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 22 KSVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HTTSH-HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHH-HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 34443 36667888888888887765 3334667888888888887 4442 34332 3577888888
Q ss_pred eccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcccccccceeeEEecCCCccccccccccccccc
Q 037935 595 YMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLERFDISIGDGSFDSTKIIGNDWFQTF 674 (1085)
Q Consensus 595 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 674 (1085)
+|++|.+... .....+..+.++++|++|++++|.+......
T Consensus 100 ~Ls~n~l~~~-------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-------------------------------- 140 (386)
T 2ca6_A 100 RLSDNAFGPT-------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-------------------------------- 140 (386)
T ss_dssp ECCSCCCCTT-------THHHHHHHHHHCTTCCEEECCSSCCHHHHHH--------------------------------
T ss_pred ECCCCcCCHH-------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHH--------------------------------
Confidence 8888876210 0012455667777888887777754311100
Q ss_pred ccccceeehhhhhhcccccccccccccCCCCCccccc---------ccccEEEEcCCCCC-ccccc-hhhHhhcccccEE
Q 037935 675 NIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCF---------QSLTRLIVWGCDKL-KYIFS-ASTIQSLEQLQHL 743 (1085)
Q Consensus 675 ~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l---------~~L~~L~L~~~~~l-~~l~~-~~~l~~l~~L~~L 743 (1085)
.++..+..+ ++|++|++++|... ..++. ...+..+++|++|
T Consensus 141 ----------------------------~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 141 ----------------------------KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred ----------------------------HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 000111122 68888888877543 12211 0245677788888
Q ss_pred EeccccchHH----HhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccCCCcccccCCCCCC
Q 037935 744 EIRLCKSLQE----IISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQ 819 (1085)
Q Consensus 744 ~l~~~~~l~~----i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~ 819 (1085)
++++|..-.. +... ....+++|+.|+++++. +.... ...++
T Consensus 193 ~L~~n~l~~~g~~~l~~~-------~l~~~~~L~~L~Ls~n~-l~~~g---------------------~~~l~------ 237 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLE-------GLAYCQELKVLDLQDNT-FTHLG---------------------SSALA------ 237 (386)
T ss_dssp ECCSSCCCHHHHHHHHHT-------TGGGCTTCCEEECCSSC-CHHHH---------------------HHHHH------
T ss_pred ECcCCCCCHhHHHHHHHH-------HhhcCCCccEEECcCCC-CCcHH---------------------HHHHH------
Confidence 8877752110 1000 01124445555544432 10000 01111
Q ss_pred CCCCCCCCcccccccCCccceeeeccCCceeeecccCCc----CccCCceEEEecCCcccc-----cchhHHhhccccce
Q 037935 820 FGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDFPQ----HLFGSLKQLRVGDDDLAC-----FPLDLLERFHNLEF 890 (1085)
Q Consensus 820 ~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~----~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~ 890 (1085)
..+..+++|++|++++|.+++.....++. ..+++|++|++++|.++. ++...+.++++|+.
T Consensus 238 ----------~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 238 ----------IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp ----------HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred ----------HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 11234677888888888876542221111 125778888888888877 66555466788888
Q ss_pred EEeecccccE
Q 037935 891 LYLSDCSYEV 900 (1085)
Q Consensus 891 L~l~~~~l~~ 900 (1085)
|++++|+++.
T Consensus 308 L~l~~N~l~~ 317 (386)
T 2ca6_A 308 LELNGNRFSE 317 (386)
T ss_dssp EECTTSBSCT
T ss_pred EEccCCcCCc
Confidence 8888888553
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=2e-13 Score=147.30 Aligned_cols=125 Identities=26% Similarity=0.309 Sum_probs=72.8
Q ss_pred cccceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEe
Q 037935 491 LKKCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLD 570 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~ 570 (1085)
..+++.|++.+|.+..++....+++|++|++++|. ...++. +.++++|++|++++|.++.+|. ++.+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~---l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK---LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCc---cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 34566666666666666554456666666666665 344443 5566666666666666666543 66666666666
Q ss_pred ccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC
Q 037935 571 LTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 571 Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 637 (1085)
+++| .++.++. +.++++|++|++++|.+. . +..+..+++|++|++++|.+.
T Consensus 119 L~~n-~i~~~~~--l~~l~~L~~L~l~~n~l~-----------~--~~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 119 LEHN-GISDING--LVHLPQLESLYLGNNKIT-----------D--ITVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CTTS-CCCCCGG--GGGCTTCCEEECCSSCCC-----------C--CGGGGGCTTCSEEECCSSCCC
T ss_pred CCCC-cCCCChh--hcCCCCCCEEEccCCcCC-----------c--chhhccCCCCCEEEccCCccc
Confidence 6666 5665542 466666666666666552 1 134555666666666655544
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=4.1e-14 Score=160.29 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=78.6
Q ss_pred cccccccC-CCCCcceeeeccCCCccccccC----hhhhcCCCcceEEEecCCcccC----Cchhh-------hcccccc
Q 037935 504 IHEVSLEF-ECPQLEFLHIDPKITFAELNIP----DNFFKGMKKLRVVDLTRVRLFS----LPSSI-------GQLTKLR 567 (1085)
Q Consensus 504 ~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~----~~~~~~l~~Lr~L~Ls~~~i~~----lp~~i-------~~L~~L~ 567 (1085)
+..++..+ .+++|++|++++|. +.... ...|.++++|++|+|++|.+.. +|..+ ..+++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~---i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNT---IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSE---ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHhcCCCccEEECCCCC---CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 33443333 56788888888875 22221 1236678888888888875543 34444 6788888
Q ss_pred EEeccCcccccc-----cchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcC---------CCCcEEEEEe
Q 037935 568 MLDLTDCLQLKF-----IVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHL---------QRLTTLEIDV 633 (1085)
Q Consensus 568 ~L~Ls~~~~l~~-----lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L---------~~L~~L~l~~ 633 (1085)
+|+|++| .++. +|.. +.++++|++|+|++|.+..... ......+..+ ++|++|++++
T Consensus 98 ~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~-------~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 98 TVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG-------AKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp EEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH-------HHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred EEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH-------HHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 8888888 7766 5544 4888888888888888732111 1122234444 7888888888
Q ss_pred ccCC
Q 037935 634 EDDS 637 (1085)
Q Consensus 634 ~~~~ 637 (1085)
|.+.
T Consensus 169 n~l~ 172 (386)
T 2ca6_A 169 NRLE 172 (386)
T ss_dssp SCCT
T ss_pred CCCC
Confidence 8765
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=5.7e-14 Score=157.30 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=53.6
Q ss_pred hhhhcCCCcceEEEecCCcccCCc-----hhhhccc-cccEEeccCcccccccchhhhhcc-----ccCCEEeccCCCcc
Q 037935 534 DNFFKGMKKLRVVDLTRVRLFSLP-----SSIGQLT-KLRMLDLTDCLQLKFIVPNILSSF-----TRLEELYMGSCSIK 602 (1085)
Q Consensus 534 ~~~~~~l~~Lr~L~Ls~~~i~~lp-----~~i~~L~-~L~~L~Ls~~~~l~~lp~~~~~~L-----~~L~~L~L~~~~~~ 602 (1085)
+.++...++|++|+|++|.++..+ ..+.+++ +|++|+|++| .++......+..+ ++|++|++++|.+.
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 344444555677777776666654 4555666 6777777766 6665544444554 66777777776652
Q ss_pred hhhcccCCccccccHH----HhhcC-CCCcEEEEEeccCCC
Q 037935 603 WEVRKGNSERSNASLD----ELMHL-QRLTTLEIDVEDDSI 638 (1085)
Q Consensus 603 ~~~~~~~~~~~~~~~~----~l~~L-~~L~~L~l~~~~~~~ 638 (1085)
...+. .+..+ ++|++|++++|.+..
T Consensus 94 -----------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 94 -----------YKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp -----------GSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred -----------hHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 22222 23344 567777776666543
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=7.9e-14 Score=152.50 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=57.9
Q ss_pred CCcceEEEecCCcccC--Cch--hhhccccccEEeccCcccccccchhhh--hccccCCEEeccCCCcchhhcccCCccc
Q 037935 540 MKKLRVVDLTRVRLFS--LPS--SIGQLTKLRMLDLTDCLQLKFIVPNIL--SSFTRLEELYMGSCSIKWEVRKGNSERS 613 (1085)
Q Consensus 540 l~~Lr~L~Ls~~~i~~--lp~--~i~~L~~L~~L~Ls~~~~l~~lp~~~~--~~L~~L~~L~L~~~~~~~~~~~~~~~~~ 613 (1085)
...++.|.+.++.+.. +.. ..-.+++|++|++++| .+....+..+ +++++|++|++++|.+....+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~------- 134 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRS------- 134 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS-------
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhh-------
Confidence 3457778888776643 111 1234567888888888 6665444334 778888888888888732100
Q ss_pred cccHHHhhcCCCCcEEEEEeccCCCCC
Q 037935 614 NASLDELMHLQRLTTLEIDVEDDSILP 640 (1085)
Q Consensus 614 ~~~~~~l~~L~~L~~L~l~~~~~~~~~ 640 (1085)
......+..+++|++|++++|.+..++
T Consensus 135 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 161 (310)
T 4glp_A 135 WLAELQQWLKPGLKVLSIAQAHSPAFS 161 (310)
T ss_dssp SHHHHHTTBCSCCCEEEEECCSSCCCC
T ss_pred hhHHHHhhhccCCCEEEeeCCCcchhh
Confidence 001133456788888888888765444
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=2.6e-14 Score=160.11 Aligned_cols=80 Identities=19% Similarity=0.113 Sum_probs=42.4
Q ss_pred EEecCCcccCC-chhhhccccccEEeccCcccccccch----hhhhccc-cCCEEeccCCCcchhhcccCCccccccHHH
Q 037935 546 VDLTRVRLFSL-PSSIGQLTKLRMLDLTDCLQLKFIVP----NILSSFT-RLEELYMGSCSIKWEVRKGNSERSNASLDE 619 (1085)
Q Consensus 546 L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~~~~l~~lp~----~~~~~L~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 619 (1085)
+++++|+++.. |..+....+|++|+|++| .++..+. ..+.+++ +|++|++++|.+ ....+..
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-----------~~~~~~~ 70 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSL-----------GFKNSDE 70 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCG-----------GGSCHHH
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCC-----------CHHHHHH
Confidence 45556666543 333333444666666666 5665554 3445555 566666666655 2223333
Q ss_pred hhcC-----CCCcEEEEEeccCC
Q 037935 620 LMHL-----QRLTTLEIDVEDDS 637 (1085)
Q Consensus 620 l~~L-----~~L~~L~l~~~~~~ 637 (1085)
+..+ ++|++|++++|.+.
T Consensus 71 l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 71 LVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhccCCCccEEECcCCcCC
Confidence 3332 56666666666544
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=1.2e-13 Score=142.05 Aligned_cols=146 Identities=16% Similarity=0.271 Sum_probs=121.9
Q ss_pred eEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccccEEeccC
Q 037935 495 YAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDLTD 573 (1085)
Q Consensus 495 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~ 573 (1085)
+.++..++.+..+|..+. ++++.|++.+|. +..++...|..+++|++|+|++|.++.+ |..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~---i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNT---IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSC---CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCc---CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 467777888888887654 789999999887 6778877789999999999999999886 67899999999999999
Q ss_pred cccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc--ccccccee
Q 037935 574 CLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL--FTKKLERF 651 (1085)
Q Consensus 574 ~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~l~~L~~L 651 (1085)
| .++.+|.++|.++++|++|+|++|.+. ...+..+..+++|++|++++|.+..++... .+++|+.|
T Consensus 90 N-~l~~l~~~~f~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 90 N-KITELPKSLFEGLFSLQLLLLNANKIN-----------CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred C-cCCccCHhHccCCCCCCEEECCCCCCC-----------EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 9 999999988889999999999999883 334456888999999999999998888753 67888888
Q ss_pred eEEec
Q 037935 652 DISIG 656 (1085)
Q Consensus 652 ~l~~~ 656 (1085)
++..+
T Consensus 158 ~L~~N 162 (220)
T 2v9t_B 158 HLAQN 162 (220)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 87543
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=3e-13 Score=142.78 Aligned_cols=163 Identities=20% Similarity=0.289 Sum_probs=137.3
Q ss_pred ecCccccCCCccccccceEEEeeccCccccccc--CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccC
Q 037935 478 RNDAVWEWPDGDALKKCYAISLLNSSIHEVSLE--FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFS 555 (1085)
Q Consensus 478 ~~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~ 555 (1085)
.+..+...|. ..+..++.|++++|.+..++.. ..+++|++|++++|. +..++...|.++++|++|+|++|.++.
T Consensus 22 ~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~ 97 (251)
T 3m19_A 22 QGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ---LQTLSAGVFDDLTELGTLGLANNQLAS 97 (251)
T ss_dssp TTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred CCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc---CCccCHhHhccCCcCCEEECCCCcccc
Confidence 3444444443 3457899999999999888753 378999999999997 677888889999999999999999999
Q ss_pred Cc-hhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEec
Q 037935 556 LP-SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVE 634 (1085)
Q Consensus 556 lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 634 (1085)
+| ..++.+++|++|+|++| .++.+|+..|.++++|++|++++|.+. ...+..+..+++|++|++++|
T Consensus 98 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 98 LPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQ-----------SIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSS
T ss_pred cChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCC-----------ccCHHHcCcCcCCCEEECCCC
Confidence 87 46799999999999999 999999988899999999999999984 223345888999999999999
Q ss_pred cCCCCCCcc--cccccceeeEEec
Q 037935 635 DDSILPDGL--FTKKLERFDISIG 656 (1085)
Q Consensus 635 ~~~~~~~~~--~l~~L~~L~l~~~ 656 (1085)
.+..++... .+++|+.|++..+
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCccCHHHHhCCCCCCEEEeeCC
Confidence 999888754 7889999988654
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=1.7e-13 Score=140.09 Aligned_cols=143 Identities=20% Similarity=0.305 Sum_probs=103.4
Q ss_pred eEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCch-hhhccccccEEeccC
Q 037935 495 YAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKLRMLDLTD 573 (1085)
Q Consensus 495 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~Ls~ 573 (1085)
+.+...++.+..+|... .++|+.|++.+|. +..++...|.++++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNS---LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCc---cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 34566666677776554 4678888888886 567777778888888888888888888765 457888888888888
Q ss_pred cccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc--ccccccee
Q 037935 574 CLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL--FTKKLERF 651 (1085)
Q Consensus 574 ~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~l~~L~~L 651 (1085)
| .++.+|...++++++|++|++++|.+.. .....+.++++|++|++++|.+..++... .+++|+.|
T Consensus 86 n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 86 N-QLQSLPNGVFDKLTQLKELALNTNQLQS-----------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred C-cCCccCHhHhcCccCCCEEEcCCCcCcc-----------cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 8 8888888777888888888888887732 22334677888888888888777665532 33444444
Q ss_pred eE
Q 037935 652 DI 653 (1085)
Q Consensus 652 ~l 653 (1085)
++
T Consensus 154 ~l 155 (208)
T 2o6s_A 154 WL 155 (208)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=1.3e-13 Score=148.63 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=100.1
Q ss_pred EEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCccc
Q 037935 497 ISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQ 576 (1085)
Q Consensus 497 Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~ 576 (1085)
+.+....+..+.....+++|+.|++.+|. +..++. +..+++|++|++++|.++.++. ++++++|++|++++| .
T Consensus 29 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~---i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~ 101 (291)
T 1h6t_A 29 DNLKKKSVTDAVTQNELNSIDQIIANNSD---IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-K 101 (291)
T ss_dssp HHTTCSCTTSEECHHHHHTCCEEECTTSC---CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-C
T ss_pred HHhcCCCcccccchhhcCcccEEEccCCC---cccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-c
Confidence 33444444444433467889999998886 566654 7788999999999999998876 889999999999999 8
Q ss_pred ccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcccccccceeeE
Q 037935 577 LKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLERFDI 653 (1085)
Q Consensus 577 l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 653 (1085)
++.+|. ++++++|++|++++|.+.. +..+..+++|+.|++++|.+..++.-..+++|+.|++
T Consensus 102 l~~~~~--l~~l~~L~~L~L~~n~i~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 102 VKDLSS--LKDLKKLKSLSLEHNGISD-------------INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 163 (291)
T ss_dssp CCCGGG--GTTCTTCCEEECTTSCCCC-------------CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred CCCChh--hccCCCCCEEECCCCcCCC-------------ChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEc
Confidence 888776 6899999999999998731 2457788899999999888776532224444444444
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=7.3e-13 Score=156.84 Aligned_cols=100 Identities=26% Similarity=0.286 Sum_probs=49.3
Q ss_pred cceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEecc
Q 037935 493 KCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLT 572 (1085)
Q Consensus 493 ~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls 572 (1085)
.++.|++.++.+..++....+++|+.|++++|. +..+++ |..+++|++|+|++|.+..+| .++.+++|++|+|+
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~---l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK---LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC---CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCC---CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 445555555555544443345555555555544 333333 444555555555555555444 34555555555555
Q ss_pred CcccccccchhhhhccccCCEEeccCCCc
Q 037935 573 DCLQLKFIVPNILSSFTRLEELYMGSCSI 601 (1085)
Q Consensus 573 ~~~~l~~lp~~~~~~L~~L~~L~L~~~~~ 601 (1085)
+| .+..++. +..|++|++|+|++|.+
T Consensus 118 ~N-~l~~l~~--l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 118 HN-GISDING--LVHLPQLESLYLGNNKI 143 (605)
T ss_dssp TS-CCCCCGG--GGGCTTCSEEECCSSCC
T ss_pred CC-CCCCCcc--ccCCCccCEEECCCCcc
Confidence 55 4444432 35555555555555544
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=5.7e-13 Score=148.91 Aligned_cols=177 Identities=17% Similarity=0.161 Sum_probs=141.0
Q ss_pred ceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhc-CCCcceEEEecCCcccCCc-hhhhccccccEEec
Q 037935 494 CYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFK-GMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDL 571 (1085)
Q Consensus 494 ~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~-~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L 571 (1085)
.+.++++++.+..+|..+ .+.++.|++++|. +..++...|. ++++|++|+|++|.|+.+| ..|.++++|++|+|
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~---l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNN---LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSC---CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCC---CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 357888889999998765 3579999999997 7788888787 8999999999999999986 56999999999999
Q ss_pred cCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCccccccccee
Q 037935 572 TDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLERF 651 (1085)
Q Consensus 572 s~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~~L 651 (1085)
++| .++.+++..|.++.+|++|+|++|.+. ...+..+..+++|+.|++++|.+..+|....
T Consensus 96 s~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~-----------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~------- 156 (361)
T 2xot_A 96 SSN-HLHTLDEFLFSDLQALEVLLLYNNHIV-----------VVDRNAFEDMAQLQKLYLSQNQISRFPVELI------- 156 (361)
T ss_dssp CSS-CCCEECTTTTTTCTTCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCCSCCGGGT-------
T ss_pred CCC-cCCcCCHHHhCCCcCCCEEECCCCccc-----------EECHHHhCCcccCCEEECCCCcCCeeCHHHh-------
Confidence 999 999999988899999999999999984 3344568899999999999998887665320
Q ss_pred eEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccch
Q 037935 652 DISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSA 731 (1085)
Q Consensus 652 ~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~ 731 (1085)
..+..+++|+.|+|++| .+..+ +.
T Consensus 157 ------------------------------------------------------~~~~~l~~L~~L~L~~N-~l~~l-~~ 180 (361)
T 2xot_A 157 ------------------------------------------------------KDGNKLPKLMLLDLSSN-KLKKL-PL 180 (361)
T ss_dssp ------------------------------------------------------C----CTTCCEEECCSS-CCCCC-CH
T ss_pred ------------------------------------------------------cCcccCCcCCEEECCCC-CCCcc-CH
Confidence 00124668888888876 45555 34
Q ss_pred hhHhhccc--ccEEEecccc
Q 037935 732 STIQSLEQ--LQHLEIRLCK 749 (1085)
Q Consensus 732 ~~l~~l~~--L~~L~l~~~~ 749 (1085)
..+..++. |+.|++.+|+
T Consensus 181 ~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 181 TDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHHSCHHHHTTEECCSSC
T ss_pred HHhhhccHhhcceEEecCCC
Confidence 56777776 4788888876
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=1.1e-12 Score=136.03 Aligned_cols=145 Identities=19% Similarity=0.249 Sum_probs=118.4
Q ss_pred ceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCch-hhhccccccEEecc
Q 037935 494 CYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKLRMLDLT 572 (1085)
Q Consensus 494 ~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~Ls 572 (1085)
...++.+++.+..+|..+. ++|+.|++++|. +..+++..|.++++|++|+|++|.+..+|. .+.++++|++|+|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCc---cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4557777888888887653 889999999887 667766778889999999999999988874 46889999999999
Q ss_pred CcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc--cccccce
Q 037935 573 DCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL--FTKKLER 650 (1085)
Q Consensus 573 ~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~l~~L~~ 650 (1085)
+| .++.+|+..|..+++|++|++++|.+. ..+..+..+++|++|++++|.+..++... .+++|+.
T Consensus 97 ~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 97 TN-QLTVLPSAVFDRLVHLKELFMCCNKLT------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCC------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CC-cCCccChhHhCcchhhCeEeccCCccc------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 99 899998887889999999999999873 23455688899999999999988888653 6788888
Q ss_pred eeEEe
Q 037935 651 FDISI 655 (1085)
Q Consensus 651 L~l~~ 655 (1085)
|++..
T Consensus 164 L~l~~ 168 (229)
T 3e6j_A 164 AYLFG 168 (229)
T ss_dssp EECTT
T ss_pred EEeeC
Confidence 87754
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=3.6e-13 Score=159.47 Aligned_cols=187 Identities=15% Similarity=0.180 Sum_probs=139.8
Q ss_pred cceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEecc
Q 037935 493 KCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLT 572 (1085)
Q Consensus 493 ~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls 572 (1085)
.+.++.+..+.+..+.....+++|+.|.+.+|. +..++. |..+++|++|+|++|.+..+|. ++.+++|++|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~---i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSD---IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCC---CCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCC---CCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 344445555555555554567899999999887 666664 7889999999999999999886 9999999999999
Q ss_pred CcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcccccccceee
Q 037935 573 DCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLERFD 652 (1085)
Q Consensus 573 ~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 652 (1085)
+| .+..+|. +.++++|++|+|++|.+.. +..+..+++|+.|++++|.+..++.-..+++|+.|+
T Consensus 96 ~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~-------------l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 96 EN-KIKDLSS--LKDLKKLKSLSLEHNGISD-------------INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 159 (605)
T ss_dssp SS-CCCCCTT--STTCTTCCEEECTTSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEE
T ss_pred CC-CCCCChh--hccCCCCCEEEecCCCCCC-------------CccccCCCccCEEECCCCccCCchhhcccCCCCEEE
Confidence 99 9998874 6999999999999998831 245889999999999999888774333666777766
Q ss_pred EEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCCccccchh
Q 037935 653 ISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKLKYIFSAS 732 (1085)
Q Consensus 653 l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~~~ 732 (1085)
++.+. .....| +..+++|+.|+|++|. +..++
T Consensus 160 Ls~N~------------------------------------------l~~~~~--l~~l~~L~~L~Ls~N~-i~~l~--- 191 (605)
T 1m9s_A 160 LEDNQ------------------------------------------ISDIVP--LAGLTKLQNLYLSKNH-ISDLR--- 191 (605)
T ss_dssp CCSSC------------------------------------------CCCCGG--GTTCTTCCEEECCSSC-CCBCG---
T ss_pred CcCCc------------------------------------------CCCchh--hccCCCCCEEECcCCC-CCCCh---
Confidence 64321 111112 5567788888888764 44442
Q ss_pred hHhhcccccEEEecccc
Q 037935 733 TIQSLEQLQHLEIRLCK 749 (1085)
Q Consensus 733 ~l~~l~~L~~L~l~~~~ 749 (1085)
.+..+++|+.|++++|.
T Consensus 192 ~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGTTCTTCSEEECCSEE
T ss_pred HHccCCCCCEEEccCCc
Confidence 37778888888888776
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=7.1e-13 Score=136.32 Aligned_cols=146 Identities=12% Similarity=0.195 Sum_probs=111.7
Q ss_pred eEEEeeccCcccccccCCCCCcceeeeccCCCcccccc-ChhhhcCCCcceEEEecCCcccCCch-hhhccccccEEecc
Q 037935 495 YAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNI-PDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKLRMLDLT 572 (1085)
Q Consensus 495 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l-~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~Ls 572 (1085)
+.++++++.+..+|..+ .+.++.|++++|. +..+ +..+|.++++|++|+|++|.++.++. .|+++++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~---l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNE---FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSC---CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCc---CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 46788888888887654 3567888888887 5555 44567888888888888888888764 78888888888888
Q ss_pred CcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCC-cc-cccccce
Q 037935 573 DCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPD-GL-FTKKLER 650 (1085)
Q Consensus 573 ~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~-~~-~l~~L~~ 650 (1085)
+| .++.+|++.|+++++|++|++++|.+. ...+..+..+++|++|++++|.+..++. .+ .+++|+.
T Consensus 90 ~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 90 SN-RLENVQHKMFKGLESLKTLMLRSNRIT-----------CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp SS-CCCCCCGGGGTTCSSCCEEECTTSCCC-----------CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CC-ccCccCHhHhcCCcCCCEEECCCCcCC-----------eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 88 888888877788888888888888873 3334557788888888888888887743 33 6778888
Q ss_pred eeEEec
Q 037935 651 FDISIG 656 (1085)
Q Consensus 651 L~l~~~ 656 (1085)
|++..+
T Consensus 158 L~L~~N 163 (220)
T 2v70_A 158 LNLLAN 163 (220)
T ss_dssp EECCSC
T ss_pred EEecCc
Confidence 877543
No 109
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.38 E-value=3.2e-11 Score=134.64 Aligned_cols=271 Identities=14% Similarity=0.119 Sum_probs=161.0
Q ss_pred CCCCccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc------CHHHHH
Q 037935 157 NKGYEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP------DIKKIQ 230 (1085)
Q Consensus 157 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~~~~~ 230 (1085)
...+..|+||+.+++++.+++..+ +++.|+|++|+|||||++++++.. + .+|+++.... +...+.
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHH
Confidence 344567999999999999988754 799999999999999999998764 2 6788775432 566777
Q ss_pred HHHHHHhCC-----------------CCC--CchHHHHHHHHHHHHHcCCcEEEEEeCCCCccc---------ccccc--
Q 037935 231 GEIAEKLGL-----------------ELS--DEAEYRRASRLYERLKNENKILVILDNIWKYLD---------LDTIG-- 280 (1085)
Q Consensus 231 ~~i~~~l~~-----------------~~~--~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~---------~~~~~-- 280 (1085)
+.+.+.+.. ... ..........+.+.....++++||+||++.... +..+.
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 777666542 000 011112222222222222499999999976432 11000
Q ss_pred -------------cc---cC------C-----CCC-CcEEEecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCC
Q 037935 281 -------------IP---FG------N-----DHE-GYNFLIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGG 332 (1085)
Q Consensus 281 -------------~~---~~------~-----~~~-gs~ilv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g 332 (1085)
.. +. . .+. ...+-+.||+.+|+.+++........ ...-.+.+..|++.++|
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~-~~~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN-LDVPENEIEEAVELLDG 237 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHHTT
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCC
Confidence 00 00 0 011 12566699999999999987642111 11225678899999999
Q ss_pred chHHHHHHHHHHh-cCCHHHHH-HHHHHhcCCCCCCCCCCcccchhhHHHHHhcC---ChHHHHHHHHhccccCCCCCHH
Q 037935 333 LPIALTTVARALR-NKSLHEWK-NALRELQTPSVVNFEGVPAETYSSIELSFKYL---KGEQLKKIFLLCSLIGNSFYLI 407 (1085)
Q Consensus 333 lPlai~~~~~~l~-~~~~~~w~-~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~~k~cf~~~s~fp~~i~~~ 407 (1085)
.|+++..++..+. ..+...+. .+.+. +...+.-.+..+ ++ ..+..+..+|. . .++..
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~l~~~~~-~~~~~l~~la~-g-~~~~~ 299 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEV---------------AKGLIMGELEELRRRSP-RYVDILRAIAL-G-YNRWS 299 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHCH-HHHHHHHHHHT-T-CCSHH
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHHH---------------HHHHHHHHHHHHHhCCh-hHHHHHHHHHh-C-CCCHH
Confidence 9999999887643 23333221 11111 111111112222 54 67888888887 2 25656
Q ss_pred HHHHHHhh-cCCCCCCchHHHHHHHHHHHHHHHhHcccceecCCcceEEE-cHHHHHHHH
Q 037935 408 DLLRYSMG-LGLFHGVNKMEDARNKLYALVHELRDCCLLLEGDRNETFYM-HDVVCDVAV 465 (1085)
Q Consensus 408 ~li~~w~~-~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~m-Hdl~~~~~~ 465 (1085)
.+....-. .| +.+..+ ...+++.|.+.+++...+ +.|++ |.+++++.+
T Consensus 300 ~l~~~~~~~~~----~~~~~~----~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 300 LIRDYLAVKGT----KIPEPR----LYALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHTTC----CCCHHH----HHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHhC----CCCHHH----HHHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 66554321 11 111222 334588999999997652 44554 778887654
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=1.5e-12 Score=133.12 Aligned_cols=134 Identities=19% Similarity=0.251 Sum_probs=116.6
Q ss_pred cccccceEEEeeccCccccccc--CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchh-hhcccc
Q 037935 489 DALKKCYAISLLNSSIHEVSLE--FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSS-IGQLTK 565 (1085)
Q Consensus 489 ~~~~~~r~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~ 565 (1085)
....++++|++++|.+..++.. ..+++|++|++.+|. ...++...|.++++|++|++++|.++.+|.. ++++++
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK---LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc---cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 3456899999999999988764 388999999999997 6788888899999999999999999998754 689999
Q ss_pred ccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC
Q 037935 566 LRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 566 L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 637 (1085)
|++|++++| .++.+|+..+.++++|++|++++|.+. ......+..+++|++|++++|.+.
T Consensus 102 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 102 LKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK-----------SVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc-----------eeCHHHhccCCCccEEEecCCCee
Confidence 999999999 999999987899999999999999884 222344788999999999999654
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=1.5e-12 Score=131.57 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=28.2
Q ss_pred hcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccc-cchhhhhccccCCEEeccCCCc
Q 037935 537 FKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKF-IVPNILSSFTRLEELYMGSCSI 601 (1085)
Q Consensus 537 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~-lp~~~~~~L~~L~~L~L~~~~~ 601 (1085)
+..+++|++|++++|.++.++ .+..+++|++|++++| .++. .|.. ++++++|++|++++|.+
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGK-DVTSDKIPN-LSGLTSLTLLDISHSAH 124 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECT-TCBGGGSCC-CTTCTTCCEEECCSSBC
T ss_pred HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECC-ccCcccChh-hcCCCCCCEEEecCCcc
Confidence 344444555555544444333 3444455555555554 4443 2222 34455555555555444
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=2.7e-12 Score=129.66 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=124.0
Q ss_pred cccccceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccC-Cchhhhcccccc
Q 037935 489 DALKKCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFS-LPSSIGQLTKLR 567 (1085)
Q Consensus 489 ~~~~~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~L~ 567 (1085)
....++++|+++++.+..++....+++|++|++.+|. ...++ .+..+++|++|++++|.++. .|..++++++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~---~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH---ATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC---CSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCC---CCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 3456799999999999988866689999999999985 45544 48889999999999999986 677899999999
Q ss_pred EEeccCcccccccchhhhhccccCCEEeccCCC-cchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCccccc
Q 037935 568 MLDLTDCLQLKFIVPNILSSFTRLEELYMGSCS-IKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTK 646 (1085)
Q Consensus 568 ~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~ 646 (1085)
+|++++| .++......++++++|++|++++|. +. .. ..+..+++|++|++++|.+..++.-..++
T Consensus 116 ~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~------------~~-~~l~~l~~L~~L~l~~n~i~~~~~l~~l~ 181 (197)
T 4ezg_A 116 LLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAIT------------DI-MPLKTLPELKSLNIQFDGVHDYRGIEDFP 181 (197)
T ss_dssp EEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCC------------CC-GGGGGCSSCCEEECTTBCCCCCTTGGGCS
T ss_pred EEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCcc------------cc-HhhcCCCCCCEEECCCCCCcChHHhccCC
Confidence 9999999 8886444456999999999999998 42 12 35889999999999999998887444888
Q ss_pred ccceeeEEec
Q 037935 647 KLERFDISIG 656 (1085)
Q Consensus 647 ~L~~L~l~~~ 656 (1085)
+|+.|++..+
T Consensus 182 ~L~~L~l~~N 191 (197)
T 4ezg_A 182 KLNQLYAFSQ 191 (197)
T ss_dssp SCCEEEECBC
T ss_pred CCCEEEeeCc
Confidence 9999988643
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=5.6e-13 Score=141.30 Aligned_cols=125 Identities=20% Similarity=0.234 Sum_probs=74.0
Q ss_pred cccceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEe
Q 037935 491 LKKCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLD 570 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~ 570 (1085)
..++..+.+..+.+..++....+++|++|++.+|. +..++ .+..+++|++|++++|.++.+|. ++++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~---i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN---IQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSC---CCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCC---cccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 33444555555555555543455666666666665 44555 25666666666666666666665 66666666666
Q ss_pred ccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCC
Q 037935 571 LTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSI 638 (1085)
Q Consensus 571 Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 638 (1085)
+++| .++.+|.. .. .+|++|++++|.+.. +..+..+++|+.|++++|.++.
T Consensus 92 L~~N-~l~~l~~~--~~-~~L~~L~L~~N~l~~-------------~~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 92 VNRN-RLKNLNGI--PS-ACLSRLFLDNNELRD-------------TDSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CCSS-CCSCCTTC--CC-SSCCEEECCSSCCSB-------------SGGGTTCTTCCEEECTTSCCCB
T ss_pred CCCC-ccCCcCcc--cc-CcccEEEccCCccCC-------------ChhhcCcccccEEECCCCcCCC
Confidence 6666 66666652 33 666666666666521 1235566666666666665543
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=6.1e-12 Score=147.05 Aligned_cols=180 Identities=21% Similarity=0.242 Sum_probs=128.4
Q ss_pred cceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEecc
Q 037935 493 KCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLT 572 (1085)
Q Consensus 493 ~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls 572 (1085)
+++.|++++|.+..+|..+ +++|++|++++|. +..+| ..+++|++|++++|.++.+|. +++ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~---l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNA---LISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSC---CSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCC---Ccccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 5778888888888887755 4788999998887 56777 346888899999998888887 655 88999999
Q ss_pred CcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcccccccceee
Q 037935 573 DCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKLERFD 652 (1085)
Q Consensus 573 ~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 652 (1085)
+| .++.+|. .+++|++|++++|.+.. .+. .+++|++|++++|.+..+|. +. ++|+.|+
T Consensus 129 ~N-~l~~lp~----~l~~L~~L~Ls~N~l~~------------lp~---~l~~L~~L~Ls~N~L~~lp~-l~-~~L~~L~ 186 (571)
T 3cvr_A 129 NN-QLTMLPE----LPALLEYINADNNQLTM------------LPE---LPTSLEVLSVRNNQLTFLPE-LP-ESLEALD 186 (571)
T ss_dssp SS-CCSCCCC----CCTTCCEEECCSSCCSC------------CCC---CCTTCCEEECCSSCCSCCCC-CC-TTCCEEE
T ss_pred CC-cCCCCCC----cCccccEEeCCCCccCc------------CCC---cCCCcCEEECCCCCCCCcch-hh-CCCCEEE
Confidence 88 8888886 57888999999888732 111 46788889999888888877 54 7777777
Q ss_pred EEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccc-----cccccEEEEcCCCCCcc
Q 037935 653 ISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPC-----FQSLTRLIVWGCDKLKY 727 (1085)
Q Consensus 653 l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~-----l~~L~~L~L~~~~~l~~ 727 (1085)
++.+. . ..+|. +.. .+.|+.|+|++| .++.
T Consensus 187 Ls~N~------------------------------------------L-~~lp~-~~~~L~~~~~~L~~L~Ls~N-~l~~ 221 (571)
T 3cvr_A 187 VSTNL------------------------------------------L-ESLPA-VPVRNHHSEETEIFFRCREN-RITH 221 (571)
T ss_dssp CCSSC------------------------------------------C-SSCCC-CC--------CCEEEECCSS-CCCC
T ss_pred CcCCC------------------------------------------C-Cchhh-HHHhhhcccccceEEecCCC-ccee
Confidence 75331 0 01232 221 122388888776 4455
Q ss_pred ccchhhHhhcccccEEEeccccchH
Q 037935 728 IFSASTIQSLEQLQHLEIRLCKSLQ 752 (1085)
Q Consensus 728 l~~~~~l~~l~~L~~L~l~~~~~l~ 752 (1085)
+|. .+..+++|+.|++++|....
T Consensus 222 lp~--~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 222 IPE--NILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCG--GGGGSCTTEEEECCSSSCCH
T ss_pred cCH--HHhcCCCCCEEEeeCCcCCC
Confidence 533 35668888888888887433
No 115
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.34 E-value=2.5e-12 Score=140.46 Aligned_cols=151 Identities=11% Similarity=0.066 Sum_probs=108.5
Q ss_pred ccceEEEeeccCcccc-ccc---CCCCCcceeeeccCCCccccc---cChhhhcCCCcceEEEecCCcccCCc-hhhhcc
Q 037935 492 KKCYAISLLNSSIHEV-SLE---FECPQLEFLHIDPKITFAELN---IPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQL 563 (1085)
Q Consensus 492 ~~~r~Lsl~~~~~~~l-~~~---~~~~~Lr~L~l~~~~~~~~~~---l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L 563 (1085)
..++.|++++|.+... +.. ..+++|++|++++|.. ... ++...+..+++|++|+|++|.+..+| ..++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i--~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSW--ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCC--SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccc--cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3589999999988654 333 4688999999999873 112 22234557999999999999998875 678899
Q ss_pred ccccEEeccCcccccc---cchh-hhhccccCCEEeccCCCcchhhcccCCccccccHHH-hhcCCCCcEEEEEeccCCC
Q 037935 564 TKLRMLDLTDCLQLKF---IVPN-ILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDE-LMHLQRLTTLEIDVEDDSI 638 (1085)
Q Consensus 564 ~~L~~L~Ls~~~~l~~---lp~~-~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~L~l~~~~~~~ 638 (1085)
++|++|+|++| .+.. ++.. .++++++|++|++++|.+...+ ..+.. +..+++|++|++++|.+..
T Consensus 169 ~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---------~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 169 PALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTGMETPT---------GVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp TTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH---------HHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred CCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCCCCchH---------HHHHHHHhcCCCCCEEECCCCCCCc
Confidence 99999999999 6543 3322 2378999999999999884211 11222 5788999999999999887
Q ss_pred C-CCcc-c---ccccceeeEE
Q 037935 639 L-PDGL-F---TKKLERFDIS 654 (1085)
Q Consensus 639 ~-~~~~-~---l~~L~~L~l~ 654 (1085)
. |..+ . +++|+.|+++
T Consensus 239 ~~p~~~~~~~~~~~L~~L~Ls 259 (310)
T 4glp_A 239 TVNPSAPRCMWSSALNSLNLS 259 (310)
T ss_dssp CCCSCCSSCCCCTTCCCEECC
T ss_pred cchhhHHhccCcCcCCEEECC
Confidence 6 4443 2 2455555553
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=3.5e-12 Score=125.20 Aligned_cols=139 Identities=22% Similarity=0.233 Sum_probs=113.2
Q ss_pred ccccceEEEeeccCcc--cccccC-CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccC-Cchhhhcccc
Q 037935 490 ALKKCYAISLLNSSIH--EVSLEF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFS-LPSSIGQLTK 565 (1085)
Q Consensus 490 ~~~~~r~Lsl~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~ 565 (1085)
.+.++++|++++|.+. .+|..+ .+++|++|++.+|. +..+ ..|..+++|++|++++|.++. +|..++++++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG---LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC---CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC---CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 3467999999999988 788764 78999999999987 4555 458889999999999999998 7888888999
Q ss_pred ccEEeccCcccccccch-hhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCc
Q 037935 566 LRMLDLTDCLQLKFIVP-NILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDG 642 (1085)
Q Consensus 566 L~~L~Ls~~~~l~~lp~-~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 642 (1085)
|++|++++| .++.+|. ..++++++|++|++++|.+...++ .....+..+++|++|+++.|....+|..
T Consensus 97 L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 97 LTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLND--------YRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT--------HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH--------HHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999999 9998873 346899999999999998742110 0114688899999999999988877754
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=3.3e-12 Score=131.29 Aligned_cols=144 Identities=15% Similarity=0.215 Sum_probs=121.2
Q ss_pred ecCccccCCCccccccceEEEeeccCccccccc--CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccC
Q 037935 478 RNDAVWEWPDGDALKKCYAISLLNSSIHEVSLE--FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFS 555 (1085)
Q Consensus 478 ~~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~ 555 (1085)
.+..+...|. ..+..++.|++++|.+..++.. ..+++|+.|++++|. +..+++..|.++++|++|+|++|.++.
T Consensus 19 ~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 94 (220)
T 2v9t_B 19 RGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLYGNKITE 94 (220)
T ss_dssp TTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC---CCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc---CCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence 3444444443 3457899999999999988753 378999999999998 677777779999999999999999999
Q ss_pred Cchh-hhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEec
Q 037935 556 LPSS-IGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVE 634 (1085)
Q Consensus 556 lp~~-i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 634 (1085)
+|.. +.++++|++|+|++| .++.+++..|.++++|++|+|++|.+.. .....+..+++|+.|++++|
T Consensus 95 l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 95 LPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQT-----------IAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-----------CCTTTTTTCTTCCEEECCSS
T ss_pred cCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCE-----------ECHHHHhCCCCCCEEEeCCC
Confidence 9865 689999999999999 9999988888999999999999999843 23345788999999999998
Q ss_pred cCC
Q 037935 635 DDS 637 (1085)
Q Consensus 635 ~~~ 637 (1085)
.+.
T Consensus 163 ~~~ 165 (220)
T 2v9t_B 163 PFI 165 (220)
T ss_dssp CEE
T ss_pred CcC
Confidence 764
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=5.1e-12 Score=129.88 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=121.2
Q ss_pred ecCccccCCCccccccceEEEeeccCcccccc---cCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCccc
Q 037935 478 RNDAVWEWPDGDALKKCYAISLLNSSIHEVSL---EFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLF 554 (1085)
Q Consensus 478 ~~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~ 554 (1085)
.+..+...|. ..+..++.|++++|.+..++. ...+++|++|++.+|. +..++...|.++++|++|+|++|.++
T Consensus 19 s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 19 SNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK---ITDIEEGAFEGASGVNEILLTSNRLE 94 (220)
T ss_dssp CSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc---CCEECHHHhCCCCCCCEEECCCCccC
Confidence 3444444443 456678999999999998843 2388999999999998 77888878999999999999999999
Q ss_pred CCch-hhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEe
Q 037935 555 SLPS-SIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDV 633 (1085)
Q Consensus 555 ~lp~-~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 633 (1085)
.+|. .++++++|++|+|++| .++.+++..|.++++|++|+|++|.+. ...+..+..+++|+.|++++
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQIT-----------TVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCC-----------CBCTTTTTTCTTCCEEECCS
T ss_pred ccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCC-----------EECHHHhcCCCCCCEEEecC
Confidence 9865 5899999999999999 999997777899999999999999984 33456688999999999999
Q ss_pred ccCC
Q 037935 634 EDDS 637 (1085)
Q Consensus 634 ~~~~ 637 (1085)
|.+.
T Consensus 163 N~l~ 166 (220)
T 2v70_A 163 NPFN 166 (220)
T ss_dssp CCEE
T ss_pred cCCc
Confidence 9765
No 119
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.31 E-value=7.8e-11 Score=134.75 Aligned_cols=281 Identities=14% Similarity=0.098 Sum_probs=167.7
Q ss_pred CccccchHHHHHHHHHHh-c----c--CCceEEEE--EcCCCCcHHHHHHHHHHHHhhc---cCCC-EEEEEEeCCCcCH
Q 037935 160 YEAFESRVSTLKSIQNAL-T----D--VNVSIIGV--YGMGGIGKTTLVKEFARQAREK---KLFD-RVVFSEVSQTPDI 226 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~~G~GKTtLa~~v~~~~~~~---~~f~-~~~wv~~~~~~~~ 226 (1085)
+..|+||+.+++++.+++ . . ...+.+.| +|++|+||||||+.+++..... .+|+ .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 4 2 24567777 9999999999999999876542 1233 3678888777889
Q ss_pred HHHHHHHHHHhCCCCCC--chHHHHHHHHHHHHH-cCCcEEEEEeCCCCccc--------ccccccccCC----C-----
Q 037935 227 KKIQGEIAEKLGLELSD--EAEYRRASRLYERLK-NENKILVILDNIWKYLD--------LDTIGIPFGN----D----- 286 (1085)
Q Consensus 227 ~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~~~--------~~~~~~~~~~----~----- 286 (1085)
..++..++.+++..... .+.......+.+.+. .+++++||+||++.... +..+...+.. +
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 99999999999765321 122233344444443 37899999999976321 1111111100 0
Q ss_pred ------------------------CCCcEEEecCCCHHHHHHHHHHhcCCC-CCCCCchHHHHHHHHHhC------CchH
Q 037935 287 ------------------------HEGYNFLIGNLSEEEAWRLFKIMNGDD-VENCKFKPTAINVAQACG------GLPI 335 (1085)
Q Consensus 287 ------------------------~~gs~ilv~~l~~~~~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~~------glPl 335 (1085)
.-+.++-+.|++.++++++|..++... ....-..+....|++.++ |.|.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 012234458999999999998764210 111223567889999999 9997
Q ss_pred HHHHHHHHH---h---c---CCHHHHHHHHHHhcCCCCCCCCCCcccchhhHHHHHhcCChHHHHHHHHhccccC---C-
Q 037935 336 ALTTVARAL---R---N---KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIG---N- 402 (1085)
Q Consensus 336 ai~~~~~~l---~---~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp---~- 402 (1085)
.+..++... . + .+...+..++..... ...+.-++..||+ +.+.++..++.+. .
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSI-HELIILRLIAEATLGGME 326 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCC
Confidence 655554322 1 1 145555555543210 1122335677886 6788888887643 2
Q ss_pred CCCHHHHHHHHh--h---cCCCCCCchHHHHHHHHHHHHHHHhHcccceec----CCcceEEEcHHH
Q 037935 403 SFYLIDLLRYSM--G---LGLFHGVNKMEDARNKLYALVHELRDCCLLLEG----DRNETFYMHDVV 460 (1085)
Q Consensus 403 ~i~~~~li~~w~--~---~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~----~~~~~~~mHdl~ 460 (1085)
.++..++...+. + .|. ..-+. ..+.+++++|.+.+++... ++.+.|++|++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNV--KPRGY----TQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCC--CCCCH----HHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CccHHHHHHHHHHHHHhhcCC--CCCCH----HHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 277766655442 2 121 00111 2234568999999999653 233345455433
No 120
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.30 E-value=1.1e-10 Score=130.83 Aligned_cols=270 Identities=16% Similarity=0.178 Sum_probs=155.3
Q ss_pred CCCccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-----cCHHHHHHH
Q 037935 158 KGYEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-----PDIKKIQGE 232 (1085)
Q Consensus 158 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~ 232 (1085)
..+..|+||+.+++.+.+ +.. +++.|+|++|+|||||++++.+.... ..+|+++... .+...+...
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHH
Confidence 345679999999999999 765 69999999999999999999987642 2578888643 344555555
Q ss_pred HHHHhC--------------C------CC-C-Cch----HHHHHHHHHHHHHc-C-CcEEEEEeCCCCcc-----cc---
Q 037935 233 IAEKLG--------------L------EL-S-DEA----EYRRASRLYERLKN-E-NKILVILDNIWKYL-----DL--- 276 (1085)
Q Consensus 233 i~~~l~--------------~------~~-~-~~~----~~~~~~~~~~~l~~-~-~~~LlvlDdv~~~~-----~~--- 276 (1085)
+.+.+. . +. . ... .......+.+.+.. . ++++||+||++... +|
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 544331 0 00 0 000 00113334444432 1 49999999997631 11
Q ss_pred -----c---cccc-----c---c------CC-----CCC-CcEEEecCCCHHHHHHHHHHhcCC-CCCCCCchHHHHHHH
Q 037935 277 -----D---TIGI-----P---F------GN-----DHE-GYNFLIGNLSEEEAWRLFKIMNGD-DVENCKFKPTAINVA 327 (1085)
Q Consensus 277 -----~---~~~~-----~---~------~~-----~~~-gs~ilv~~l~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~ 327 (1085)
+ .+.. . + .. .+. ...|-+.||+.+++.+++...... ...... . ..|+
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~-~~i~ 236 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---Y-EVVY 236 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC---H-HHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc---H-HHHH
Confidence 1 0000 0 0 00 011 235666999999999999876421 111111 1 8899
Q ss_pred HHhCCchHHHHHHHHHHh-cCCHHHHHHH-HHHhcCCCCCCCCCCcccchhhHH-HHHh--cCChHHHHHHHHhccccCC
Q 037935 328 QACGGLPIALTTVARALR-NKSLHEWKNA-LRELQTPSVVNFEGVPAETYSSIE-LSFK--YLKGEQLKKIFLLCSLIGN 402 (1085)
Q Consensus 328 ~~~~glPlai~~~~~~l~-~~~~~~w~~~-~~~l~~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~~k~cf~~~s~fp~ 402 (1085)
+.++|.|+++..++..+. ..+...|..- .+.. ...+...+. +.++ .+++ ..+..+..+|.-+
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~g~- 303 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-----------KKLILKEFENFLHGREIARK-RYLNIMRTLSKCG- 303 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTTCB-
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-----------HHHHHHHHHHHhhccccccH-HHHHHHHHHHcCC-
Confidence 999999999999987764 3344444211 1100 000111111 1111 5775 6788888888732
Q ss_pred CCCHHHHHHHHh-hcCCCCCCchHHHHHHHHHHHHHHHhHcccceecCCcceEE-EcHHHHHHH
Q 037935 403 SFYLIDLLRYSM-GLGLFHGVNKMEDARNKLYALVHELRDCCLLLEGDRNETFY-MHDVVCDVA 464 (1085)
Q Consensus 403 ~i~~~~li~~w~-~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~-mHdl~~~~~ 464 (1085)
+...+....- ..|. ..+.. ...++++.|.+.+++...+ +.|+ .|++++++.
T Consensus 304 --~~~~l~~~~~~~~g~---~~~~~----~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 --KWSDVKRALELEEGI---EISDS----EIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp --CHHHHHHHHHHHHCS---CCCHH----HHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred --CHHHHHHHHHHhcCC---CCCHH----HHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 5555443210 1121 01112 2334589999999987653 4465 578888764
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.29 E-value=7.8e-12 Score=129.50 Aligned_cols=142 Identities=20% Similarity=0.187 Sum_probs=120.1
Q ss_pred CccccCCCccccccceEEEeeccCcccccc-cC-CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc
Q 037935 480 DAVWEWPDGDALKKCYAISLLNSSIHEVSL-EF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP 557 (1085)
Q Consensus 480 ~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp 557 (1085)
..+...|. ..+.+++.|++++|.+..++. .+ .+++|++|++.+|. +..++...|.++++|++|+|++|.++.+|
T Consensus 29 ~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~---l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 104 (229)
T 3e6j_A 29 KRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ---LGALPVGVFDSLTQLTVLDLGTNQLTVLP 104 (229)
T ss_dssp SCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC---CCCcChhhcccCCCcCEEECCCCcCCccC
Confidence 33444443 456789999999999998854 33 88999999999998 78888888999999999999999999987
Q ss_pred h-hhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccC
Q 037935 558 S-SIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDD 636 (1085)
Q Consensus 558 ~-~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 636 (1085)
. .+..+++|++|+|++| .++.+|..+ .++++|++|++++|.+.. .....+..+++|+.|++++|.+
T Consensus 105 ~~~~~~l~~L~~L~Ls~N-~l~~lp~~~-~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCN-KLTELPRGI-ERLTHLTHLALDQNQLKS-----------IPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCSCCTTG-GGCTTCSEEECCSSCCCC-----------CCTTTTTTCTTCCEEECTTSCB
T ss_pred hhHhCcchhhCeEeccCC-cccccCccc-ccCCCCCEEECCCCcCCc-----------cCHHHHhCCCCCCEEEeeCCCc
Confidence 5 4689999999999999 999999885 999999999999999842 2234578899999999999976
Q ss_pred CC
Q 037935 637 SI 638 (1085)
Q Consensus 637 ~~ 638 (1085)
..
T Consensus 172 ~c 173 (229)
T 3e6j_A 172 DC 173 (229)
T ss_dssp CT
T ss_pred cC
Confidence 54
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.26 E-value=9.2e-12 Score=139.05 Aligned_cols=166 Identities=16% Similarity=0.181 Sum_probs=130.5
Q ss_pred EecCccccCCCccccccceEEEeeccCcccccccC---CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcc
Q 037935 477 VRNDAVWEWPDGDALKKCYAISLLNSSIHEVSLEF---ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRL 553 (1085)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i 553 (1085)
..+..+...|. ..+..++.|++++|.+..++... .+++|++|++++|. +..++...|.++++|++|+|++|.+
T Consensus 25 c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 25 CSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH---LNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp CCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc---CCccChhhccCCCCCCEEECCCCcC
Confidence 34445555543 45667999999999999887643 78999999999998 7888888899999999999999999
Q ss_pred cCCch-hhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEE
Q 037935 554 FSLPS-SIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEID 632 (1085)
Q Consensus 554 ~~lp~-~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 632 (1085)
+.+|. .|.++++|++|+|++| .+..+++..|.++++|++|+|++|.+...+. .....+..+++|+.|+++
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--------~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPV--------ELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCG--------GGTC----CTTCCEEECC
T ss_pred CcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCH--------HHhcCcccCCcCCEEECC
Confidence 99864 6899999999999999 9999987778999999999999999853322 111122679999999999
Q ss_pred eccCCCCCCcc--cccc--cceeeEEe
Q 037935 633 VEDDSILPDGL--FTKK--LERFDISI 655 (1085)
Q Consensus 633 ~~~~~~~~~~~--~l~~--L~~L~l~~ 655 (1085)
+|.+..++... .+.. ++.|++..
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCCccCHHHhhhccHhhcceEEecC
Confidence 99999888543 3443 35666643
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.24 E-value=2.2e-11 Score=128.93 Aligned_cols=145 Identities=21% Similarity=0.170 Sum_probs=119.9
Q ss_pred cccccceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccE
Q 037935 489 DALKKCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRM 568 (1085)
Q Consensus 489 ~~~~~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~ 568 (1085)
....+++.|++.+|.+..++....+++|++|++++|. +..++. |.++++|++|++++|+++.+|... . ++|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~---i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~ 110 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ---ISDLSP--LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSR 110 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG--GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCE
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc---cCCChh--hccCCCCCEEECCCCccCCcCccc-c-CcccE
Confidence 3456789999999999988866688999999999987 666766 888999999999999999987533 3 99999
Q ss_pred EeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCccccccc
Q 037935 569 LDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKL 648 (1085)
Q Consensus 569 L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L 648 (1085)
|++++| .++.++. ++++++|++|++++|.+. . +..+..+++|+.|++++|.+..++.-..+++|
T Consensus 111 L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~-----------~--~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L 174 (263)
T 1xeu_A 111 LFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLK-----------S--IVMLGFLSKLEVLDLHGNEITNTGGLTRLKKV 174 (263)
T ss_dssp EECCSS-CCSBSGG--GTTCTTCCEEECTTSCCC-----------B--CGGGGGCTTCCEEECTTSCCCBCTTSTTCCCC
T ss_pred EEccCC-ccCCChh--hcCcccccEEECCCCcCC-----------C--ChHHccCCCCCEEECCCCcCcchHHhccCCCC
Confidence 999999 8998874 699999999999999873 1 13588899999999999998887433378889
Q ss_pred ceeeEEec
Q 037935 649 ERFDISIG 656 (1085)
Q Consensus 649 ~~L~l~~~ 656 (1085)
+.|+++.+
T Consensus 175 ~~L~l~~N 182 (263)
T 1xeu_A 175 NWIDLTGQ 182 (263)
T ss_dssp CEEEEEEE
T ss_pred CEEeCCCC
Confidence 99988754
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=9e-12 Score=125.03 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=107.8
Q ss_pred eEEEeeccCcccccccCCCCCcceeeeccCCCccccccCh-hhhcCCCcceEEEecCCcccCC-chhhhccccccEEecc
Q 037935 495 YAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPD-NFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDLT 572 (1085)
Q Consensus 495 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~-~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls 572 (1085)
+.++++++.+..+|..+. .++++|++.+|. +..++. .+|.++++|++|+|++|.++.+ |..++++++|++|+|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~---i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNE---LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCC---CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCc---CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 678888999998887653 489999999987 666665 3588999999999999999987 6789999999999999
Q ss_pred CcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC
Q 037935 573 DCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 573 ~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 637 (1085)
+| .++.+++..|+++++|++|++++|.+. ...+..+..+++|++|++++|.+.
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 EN-KIKEISNKMFLGLHQLKTLNLYDNQIS-----------CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SC-CCCEECSSSSTTCTTCCEEECCSSCCC-----------EECTTSSTTCTTCCEEECTTCCBC
T ss_pred CC-cCCccCHHHhcCCCCCCEEECCCCcCC-----------eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99 999998887799999999999999984 334556788899999999988765
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=1.7e-11 Score=117.45 Aligned_cols=128 Identities=20% Similarity=0.171 Sum_probs=96.2
Q ss_pred cccceEEEeeccCcc--cccccC-CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccC-Cchhhhccccc
Q 037935 491 LKKCYAISLLNSSIH--EVSLEF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFS-LPSSIGQLTKL 566 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~L 566 (1085)
+.++++|++++|.+. .+|..+ .+++|+.|++.+|. +..+ ..|.++++|++|++++|.++. +|..++++++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG---LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC---CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC---CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 356888999998887 677654 78889999998886 4555 447888889999999998888 78777888899
Q ss_pred cEEeccCcccccccch-hhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEE
Q 037935 567 RMLDLTDCLQLKFIVP-NILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEID 632 (1085)
Q Consensus 567 ~~L~Ls~~~~l~~lp~-~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 632 (1085)
++|++++| .++.+|. ..++++++|++|++++|.+...++ .....+..+++|+.|+++
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLND--------YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT--------HHHHHHHHCTTCCEETTB
T ss_pred CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHH--------HHHHHHHHCCCcccccCC
Confidence 99999988 7887652 335888889999998888732110 011457778888887653
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.21 E-value=1.1e-11 Score=150.88 Aligned_cols=151 Identities=16% Similarity=0.143 Sum_probs=92.7
Q ss_pred cccceEEEeeccCcccccccC-CCCCcceeeeccCCCc-cccccChhhhcCCCcceEEEecCCcccCCchhhhccccccE
Q 037935 491 LKKCYAISLLNSSIHEVSLEF-ECPQLEFLHIDPKITF-AELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRM 568 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~-~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~ 568 (1085)
...++++++..+.+...+... ....|+.+.+...... ....++...|..+..|++|+|++|.+..+|..+.++++|++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 346888999888887765432 3344444443321100 01235667789999999999999999999999999999999
Q ss_pred EeccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc-cccc
Q 037935 569 LDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL-FTKK 647 (1085)
Q Consensus 569 L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~l~~ 647 (1085)
|+|++| .++.+|..+ ++|++|++|+|++|.+. ..+..+++|++|++|++++|.+..+|..+ .+++
T Consensus 252 L~Ls~N-~l~~lp~~~-~~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~ 317 (727)
T 4b8c_D 252 LYLNGN-SLTELPAEI-KNLSNLRVLDLSHNRLT------------SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCN 317 (727)
T ss_dssp CBCTTS-CCSCCCGGG-GGGTTCCEEECTTSCCS------------SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTT
T ss_pred EEeeCC-cCcccChhh-hCCCCCCEEeCcCCcCC------------ccChhhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 999999 999999875 99999999999999983 34556889999999999999999999887 7889
Q ss_pred cceeeEEe
Q 037935 648 LERFDISI 655 (1085)
Q Consensus 648 L~~L~l~~ 655 (1085)
|+.|+++.
T Consensus 318 L~~L~L~~ 325 (727)
T 4b8c_D 318 LQFLGVEG 325 (727)
T ss_dssp CCCEECTT
T ss_pred ccEEeCCC
Confidence 99998854
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=3.2e-11 Score=120.86 Aligned_cols=126 Identities=20% Similarity=0.229 Sum_probs=91.2
Q ss_pred eEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEeccC
Q 037935 495 YAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTD 573 (1085)
Q Consensus 495 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~ 573 (1085)
+.++++++.+..+|..+ .++|++|++.+|. +..+|. .|.++++|++|+|++|.|+.++ ..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~---i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQ---FTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSC---CCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCc---CchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45677777777777654 3678888888776 566763 5777888888888888887765 4577888888888888
Q ss_pred cccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC
Q 037935 574 CLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 574 ~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 637 (1085)
| .++.+++..|.++++|++|+|++|.+... ....+..+++|+.|++++|.+.
T Consensus 88 N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 N-RLRCIPPRTFDGLKSLRLLSLHGNDISVV-----------PEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp S-CCCBCCTTTTTTCTTCCEEECCSSCCCBC-----------CTTTTTTCTTCCEEECCSSCEE
T ss_pred C-ccCEeCHHHhCCCCCCCEEECCCCCCCee-----------ChhhhhcCccccEEEeCCCCee
Confidence 8 78887777678888888888888877422 2234667777888877777543
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=8.8e-12 Score=123.27 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=56.5
Q ss_pred ccceEEEeeccCcccccccCCCC-CcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhh-hccccccEE
Q 037935 492 KKCYAISLLNSSIHEVSLEFECP-QLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSI-GQLTKLRML 569 (1085)
Q Consensus 492 ~~~r~Lsl~~~~~~~l~~~~~~~-~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L 569 (1085)
.+++.|++.+|.+..++....+. +|++|++++|. +..++ .|.++++|++|++++|.++.+|..+ +.+++|++|
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~---l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE---IRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC---CCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC---CCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 34566666666655554433333 56666666554 33332 2555566666666666665555333 556666666
Q ss_pred eccCcccccccch-hhhhccccCCEEeccCCCc
Q 037935 570 DLTDCLQLKFIVP-NILSSFTRLEELYMGSCSI 601 (1085)
Q Consensus 570 ~Ls~~~~l~~lp~-~~~~~L~~L~~L~L~~~~~ 601 (1085)
++++| .++.+|. ..++++++|++|++++|.+
T Consensus 94 ~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 94 ILTNN-SLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred ECCCC-cCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 66666 5555554 1235556666666666655
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=4.8e-11 Score=118.13 Aligned_cols=129 Identities=19% Similarity=0.262 Sum_probs=103.6
Q ss_pred ceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchh-hhccccccEEecc
Q 037935 494 CYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSS-IGQLTKLRMLDLT 572 (1085)
Q Consensus 494 ~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~Ls 572 (1085)
.+.+++.++.+..+|... .++|++|++.+|. ...++...|.++++|++|++++|.++.+|.. ++.+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCc---ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 356777788888887554 3789999999887 6677877788899999999999999888754 6889999999999
Q ss_pred CcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCC
Q 037935 573 DCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSI 638 (1085)
Q Consensus 573 ~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 638 (1085)
+| .++.+|+..+.++++|++|++++|.+... ....+..+++|++|++++|.+..
T Consensus 85 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-----------~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 EN-KLQSLPNGVFDKLTQLKELALDTNQLKSV-----------PDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC-----------CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CC-CccccCHHHhhCCcccCEEECcCCcceEe-----------CHHHhcCCcccCEEEecCCCeec
Confidence 99 89998888778899999999999987422 22335778889999998887653
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=4.1e-11 Score=120.11 Aligned_cols=122 Identities=16% Similarity=0.255 Sum_probs=106.0
Q ss_pred ceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCEEec
Q 037935 517 EFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYM 596 (1085)
Q Consensus 517 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L 596 (1085)
+++++.++. ...+|..++ ++|++|++++|.++.+|..+.++++|++|+|++| .++.+++..|.++++|++|+|
T Consensus 13 ~~l~~~~~~---l~~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKG---LKVLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSC---CSSCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCC---CCcCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEEC
Confidence 577888776 678887643 5899999999999999999999999999999999 999999888899999999999
Q ss_pred cCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc--cccccceeeEEec
Q 037935 597 GSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL--FTKKLERFDISIG 656 (1085)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~ 656 (1085)
++|.+. ...+..+..+++|++|++++|.+..++... .+++|+.|++..+
T Consensus 86 s~N~l~-----------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 86 SYNRLR-----------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CSSCCC-----------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccC-----------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 999984 334456889999999999999999998864 6889999988643
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.18 E-value=6.1e-11 Score=138.59 Aligned_cols=171 Identities=15% Similarity=0.160 Sum_probs=133.6
Q ss_pred ccccceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEE
Q 037935 490 ALKKCYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRML 569 (1085)
Q Consensus 490 ~~~~~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L 569 (1085)
...+++.|++++|.+..+| ..+++|++|++++|. +..+|. |.+ +|++|+|++|.++.+|. .+++|++|
T Consensus 78 l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~---l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L 145 (571)
T 3cvr_A 78 LPPQITVLEITQNALISLP--ELPASLEYLDACDNR---LSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYI 145 (571)
T ss_dssp CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSC---CSCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEE
T ss_pred HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCC---CCCcch--hhc--CCCEEECCCCcCCCCCC---cCccccEE
Confidence 3468999999999999998 447999999999997 666887 544 99999999999999997 78999999
Q ss_pred eccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCccccccc-
Q 037935 570 DLTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGLFTKKL- 648 (1085)
Q Consensus 570 ~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~l~~L- 648 (1085)
++++| .++.+|. .+++|++|++++|.+.. .+. +. ++|+.|++++|.++.+|. +. .+|
T Consensus 146 ~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~~------------lp~-l~--~~L~~L~Ls~N~L~~lp~-~~-~~L~ 203 (571)
T 3cvr_A 146 NADNN-QLTMLPE----LPTSLEVLSVRNNQLTF------------LPE-LP--ESLEALDVSTNLLESLPA-VP-VRNH 203 (571)
T ss_dssp ECCSS-CCSCCCC----CCTTCCEEECCSSCCSC------------CCC-CC--TTCCEEECCSSCCSSCCC-CC-----
T ss_pred eCCCC-ccCcCCC----cCCCcCEEECCCCCCCC------------cch-hh--CCCCEEECcCCCCCchhh-HH-Hhhh
Confidence 99999 9999986 57899999999999842 122 33 899999999999998888 42 255
Q ss_pred ------ceeeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCC
Q 037935 649 ------ERFDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGC 722 (1085)
Q Consensus 649 ------~~L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~ 722 (1085)
+.|+++. +... .+|.++..+++|+.|+|++|
T Consensus 204 ~~~~~L~~L~Ls~------------------------------------------N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 204 HSEETEIFFRCRE------------------------------------------NRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp ----CCEEEECCS------------------------------------------SCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred cccccceEEecCC------------------------------------------Ccce-ecCHHHhcCCCCCEEEeeCC
Confidence 5555532 2222 46777778999999999998
Q ss_pred CCCccccchhhHhhccc
Q 037935 723 DKLKYIFSASTIQSLEQ 739 (1085)
Q Consensus 723 ~~l~~l~~~~~l~~l~~ 739 (1085)
+..... +..+..++.
T Consensus 241 ~l~~~~--p~~l~~l~~ 255 (571)
T 3cvr_A 241 PLSSRI--RESLSQQTA 255 (571)
T ss_dssp SCCHHH--HHHHHHHHH
T ss_pred cCCCcC--HHHHHHhhc
Confidence 765554 334555543
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=2.4e-11 Score=133.86 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=66.8
Q ss_pred CCCcceeeeccCCCccccccChhhhcC-CCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhc----
Q 037935 513 CPQLEFLHIDPKITFAELNIPDNFFKG-MKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSS---- 587 (1085)
Q Consensus 513 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~-l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~---- 587 (1085)
..+++.|.+.++-. ...+ ..+.. +++|++|||++|.|......-+.++.++++.+..+ .+|...|.+
T Consensus 24 ~~~l~~L~l~g~i~--~~~~--~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLN--AEDF--RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEEC--HHHH--HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEecccc--HHHH--HHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccc
Confidence 34566666665421 1111 12333 67788888888888732111223333555555555 567777778
Q ss_pred ----cccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc
Q 037935 588 ----FTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL 643 (1085)
Q Consensus 588 ----L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 643 (1085)
+++|+.|++.+ .+.. .....|..+++|+.++++.|.+..++...
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~-----------I~~~aF~~~~~L~~l~l~~n~i~~i~~~a 143 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKN-----------IEDAAFKGCDNLKICQIRKKTAPNLLPEA 143 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCE-----------ECTTTTTTCTTCCEEEBCCSSCCEECTTS
T ss_pred cccccCCCcEEECCc-cccc-----------hhHHHhhcCcccceEEcCCCCccccchhh
Confidence 88888888887 5532 23345778888888888888777666654
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=4.2e-11 Score=117.42 Aligned_cols=130 Identities=20% Similarity=0.200 Sum_probs=108.6
Q ss_pred CCCCcceeeeccCCCcccc--ccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccc
Q 037935 512 ECPQLEFLHIDPKITFAEL--NIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFT 589 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~~~~--~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~ 589 (1085)
..++|++|++.+|. +. .+|.. |..+++|++|++++|.++.+ ..++.+++|++|++++| .+...++..+.+++
T Consensus 22 ~~~~L~~L~l~~n~---l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCK---SNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCB---CBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCT
T ss_pred CcccCCEEECCCCC---CChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCC
Confidence 34889999999997 44 67764 78899999999999999998 78999999999999999 88884455568899
Q ss_pred cCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCC----cc-cccccceeeEEecC
Q 037935 590 RLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPD----GL-FTKKLERFDISIGD 657 (1085)
Q Consensus 590 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~----~~-~l~~L~~L~l~~~~ 657 (1085)
+|++|++++|.+... ..+..+..+++|++|++++|.+..++. .+ .+++|+.|++..+.
T Consensus 96 ~L~~L~Ls~N~l~~~----------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 NLTHLNLSGNKLKDI----------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TCCEEECBSSSCCSS----------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEeccCCccCcc----------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 999999999998421 123678899999999999999998887 33 78899999887653
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=4.6e-11 Score=118.09 Aligned_cols=135 Identities=16% Similarity=0.094 Sum_probs=110.9
Q ss_pred cccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhh
Q 037935 506 EVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNIL 585 (1085)
Q Consensus 506 ~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~ 585 (1085)
..+....+++|+.|++.+|. +..++. +....++|++|++++|.++.+ ..++.+++|++|++++| .++.+|++++
T Consensus 11 ~~~~~~~~~~L~~L~l~~n~---l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~ 84 (176)
T 1a9n_A 11 QAAQYTNAVRDRELDLRGYK---IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLD 84 (176)
T ss_dssp TSCEEECTTSCEEEECTTSC---CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHH
T ss_pred HHHhcCCcCCceEEEeeCCC---CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchh
Confidence 33445578999999999997 566654 334344999999999999988 57899999999999999 9999998878
Q ss_pred hccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCc----c-cccccceeeEEec
Q 037935 586 SSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDG----L-FTKKLERFDISIG 656 (1085)
Q Consensus 586 ~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~----~-~l~~L~~L~l~~~ 656 (1085)
+++++|++|++++|.+...+ ....+..+++|+.|++++|.+..+|.. + .+++|+.|++..+
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~----------~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELG----------DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGG----------GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hcCCCCCEEECCCCcCCcch----------hhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 99999999999999983211 123688999999999999999988875 3 7889999988654
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.12 E-value=4.8e-11 Score=114.34 Aligned_cols=126 Identities=19% Similarity=0.250 Sum_probs=104.5
Q ss_pred CCCCcceeeeccCCCcccc--ccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccc
Q 037935 512 ECPQLEFLHIDPKITFAEL--NIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFT 589 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~~~~--~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~ 589 (1085)
..++|+.|++.+|. .. .+|. .|..+++|++|++++|.++.+ ..++++++|++|++++| .++...+..+++++
T Consensus 15 ~~~~l~~L~l~~n~---l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 15 TPSDVKELVLDNSR---SNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCP 88 (149)
T ss_dssp CGGGCSEEECTTCB---CBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCT
T ss_pred CCccCeEEEccCCc---CChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCC
Confidence 34789999999997 44 6775 578999999999999999998 78999999999999999 89884444568899
Q ss_pred cCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCC---c-c-cccccceeeE
Q 037935 590 RLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPD---G-L-FTKKLERFDI 653 (1085)
Q Consensus 590 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~---~-~-~l~~L~~L~l 653 (1085)
+|++|++++|.+... ..+..+..+++|++|++++|.+..++. . + .+++|+.|++
T Consensus 89 ~L~~L~ls~N~i~~~----------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 NLTHLNLSGNKIKDL----------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTSCCCSH----------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCEEECCCCcCCCh----------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 999999999998421 123678999999999999999998887 2 2 6778887765
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.09 E-value=5.1e-09 Score=118.21 Aligned_cols=264 Identities=12% Similarity=0.039 Sum_probs=157.7
Q ss_pred ccccchHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhcc----C--CCEEEEEEeCCCc-CHHHH
Q 037935 161 EAFESRVSTLKSIQNALT----DVNVSIIGVYGMGGIGKTTLVKEFARQAREKK----L--FDRVVFSEVSQTP-DIKKI 229 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~--f~~~~wv~~~~~~-~~~~~ 229 (1085)
+.++||+.+++++.+++. ....+.+.|+|++|+||||+|+.+++...... . ...++|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 669999999999987775 34457899999999999999999999764321 1 2357888887767 88899
Q ss_pred HHHHHHHh-CCCCC--CchHHHHHHHHHHHHHcCCcEEEEEeCCCCccc--cccc-ccccCCCCC---------------
Q 037935 230 QGEIAEKL-GLELS--DEAEYRRASRLYERLKNENKILVILDNIWKYLD--LDTI-GIPFGNDHE--------------- 288 (1085)
Q Consensus 230 ~~~i~~~l-~~~~~--~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~--~~~~-~~~~~~~~~--------------- 288 (1085)
+..++.++ +.... ..........+.+.+. .++.+||+||++.... +... ...+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 99999888 32211 1122333455555554 4445999999976421 1111 000000001
Q ss_pred ----------CcEEEecCCCHHHHHHHHHHhcCC-CCCCCCchHHHHHHHHHhC---CchH-HHHHHHHHH--h----cC
Q 037935 289 ----------GYNFLIGNLSEEEAWRLFKIMNGD-DVENCKFKPTAINVAQACG---GLPI-ALTTVARAL--R----NK 347 (1085)
Q Consensus 289 ----------gs~ilv~~l~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPl-ai~~~~~~l--~----~~ 347 (1085)
+..|-+.|++.++..+++..++.. -....-..+..+.+++.++ |.|. |+..+.... . ..
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 124445999999999999987521 0111222566788888888 8876 444433332 1 23
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCCcccchhhHHHHHhcCChHHHHHHHHhccccCC-C-CCHHHHHHHHhhcCCCCCCchH
Q 037935 348 SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGN-S-FYLIDLLRYSMGLGLFHGVNKM 425 (1085)
Q Consensus 348 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~-~-i~~~~li~~w~~~g~~~~~~~~ 425 (1085)
+.+++..+++... ...+.-+++.|++ +.+..+..++.... + +. +......-..| ... .+.
T Consensus 259 ~~~~v~~~~~~~~--------------~~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~-~~~ 320 (384)
T 2qby_B 259 RKEHVDKAIVDYE--------------QERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP-LSY 320 (384)
T ss_dssp CHHHHHHHHHHHH--------------HHHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC-CCH
T ss_pred CHHHHHHHHHHHh--------------cchHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC-CCH
Confidence 7778877776431 1345567788986 45555554554111 1 11 11111122223 111 112
Q ss_pred HHHHHHHHHHHHHHhHccccee
Q 037935 426 EDARNKLYALVHELRDCCLLLE 447 (1085)
Q Consensus 426 ~~~~~~~~~~~~~L~~~~ll~~ 447 (1085)
..+.++++.|...+++..
T Consensus 321 ----~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 321 ----RRFSDIISELDMFGIVKI 338 (384)
T ss_dssp ----HHHHHHHHHHHHTTSEEE
T ss_pred ----HHHHHHHHHHHhCCCEEE
Confidence 234456889999999875
No 137
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.08 E-value=1.2e-10 Score=103.46 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=61.5
Q ss_pred HHHHhhhhhHHhhhchhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHHHHHHHH
Q 037935 17 ELVKCLAPPTERQLVYLRKRNYNANLENLKAEMEKLKAERTSIQRRVSEAKEKG-EEIEEKVEKWLVSANGIIDQAAKFV 95 (1085)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~-~~~~~~~~~wl~~~~~~~~~~ed~l 95 (1085)
.++++|.+.+.+++..+ .+++++++.|+++|..|++++.+|+.+. +..++.++.|+++||+++||+||++
T Consensus 5 ~ll~KL~~ll~~E~~l~---------~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~i 75 (115)
T 3qfl_A 5 NLIPKLGELLTEEFKLH---------KGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVV 75 (115)
T ss_dssp SHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------hchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555544 4899999999999999999999998763 3468999999999999999999999
Q ss_pred HhHhhc
Q 037935 96 EDEEST 101 (1085)
Q Consensus 96 d~~~~~ 101 (1085)
|+|...
T Consensus 76 D~f~~~ 81 (115)
T 3qfl_A 76 DKFLVQ 81 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999643
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=3.5e-10 Score=124.46 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=23.2
Q ss_pred cccccEEEEcCCCCCccccchhhHhhcccccEEEecccc
Q 037935 711 FQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCK 749 (1085)
Q Consensus 711 l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~ 749 (1085)
+++|+.|.|.+ .++.+ +...|..+++|+.|.+.++.
T Consensus 100 ~~~L~~l~L~~--~i~~I-~~~aF~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNI-EDAAFKGCDNLKICQIRKKT 135 (329)
T ss_dssp CTTCCC-CBCT--TCCEE-CTTTTTTCTTCCEEEBCCSS
T ss_pred cCCCcEEECCc--cccch-hHHHhhcCcccceEEcCCCC
Confidence 67777777765 45554 33557777777777777665
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=3.5e-10 Score=111.02 Aligned_cols=102 Identities=19% Similarity=0.290 Sum_probs=71.1
Q ss_pred eEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchh-hhccccccEEeccC
Q 037935 495 YAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSS-IGQLTKLRMLDLTD 573 (1085)
Q Consensus 495 r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~Ls~ 573 (1085)
+.++++++.+..+|..+. ++|+.|++++|. +..+++..|.++++|++|+|++|+++.+|.. +.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 456777777777766543 677777777776 5566556677777777777777777777654 46777777777777
Q ss_pred cccccccchhhhhccccCCEEeccCCCc
Q 037935 574 CLQLKFIVPNILSSFTRLEELYMGSCSI 601 (1085)
Q Consensus 574 ~~~l~~lp~~~~~~L~~L~~L~L~~~~~ 601 (1085)
| .++.+|++.|.++++|++|++++|.+
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCCc
Confidence 7 77777776567777777777777766
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.05 E-value=1.6e-10 Score=115.89 Aligned_cols=122 Identities=23% Similarity=0.261 Sum_probs=102.1
Q ss_pred ceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchh--hhccccccEEeccCcccccccchhhhhccccCCEE
Q 037935 517 EFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSS--IGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEEL 594 (1085)
Q Consensus 517 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~--i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L 594 (1085)
++++++++. ...+|..++. +|++|++++|.++.+|.. ++++++|++|+|++| .++.+++..|+++++|++|
T Consensus 11 ~~l~~s~~~---l~~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRG---LKEIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSC---CSSCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCC---cCcCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEE
Confidence 788898887 6788876433 899999999999998753 899999999999999 9999977778999999999
Q ss_pred eccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCc-c-cccccceeeEEec
Q 037935 595 YMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDG-L-FTKKLERFDISIG 656 (1085)
Q Consensus 595 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~ 656 (1085)
++++|.+.. ..+..+.++++|++|++++|.+..++.. + .+++|+.|++..+
T Consensus 84 ~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 84 QLGENKIKE-----------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp ECCSCCCCE-----------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred ECCCCcCCc-----------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 999999843 3334578899999999999999877543 4 7888999988543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=3.8e-10 Score=110.42 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=74.0
Q ss_pred ceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchh-hhccccccEEecc
Q 037935 494 CYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSS-IGQLTKLRMLDLT 572 (1085)
Q Consensus 494 ~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~Ls 572 (1085)
.+.++++++.+..+|..+ .++|++|++++|. +..+++..|.++++|++|+|++|+++.+|.. +.++++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCc---CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 356777777777777655 3677777777776 5666666677777777777777777777643 4677777777777
Q ss_pred CcccccccchhhhhccccCCEEeccCCCc
Q 037935 573 DCLQLKFIVPNILSSFTRLEELYMGSCSI 601 (1085)
Q Consensus 573 ~~~~l~~lp~~~~~~L~~L~~L~L~~~~~ 601 (1085)
+| .++.+|++.|.++++|++|+|++|.+
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 77 77777776667777777777777766
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.05 E-value=2.7e-10 Score=134.11 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=50.0
Q ss_pred ceEEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccC
Q 037935 494 CYAISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTD 573 (1085)
Q Consensus 494 ~r~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~ 573 (1085)
++.|++++|.++.+|....+++|+.|++++|. +..+|. .|.++++|++|+|++|.++.+| .++++++|++|+|++
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~---l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR---LRALPP-ALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSSC---CCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCccc---ccccch-hhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 44555555555555443344555555555544 334443 2444555555555555555554 455555555555555
Q ss_pred ccccccc--chhhhhccccCCEEeccCCCc
Q 037935 574 CLQLKFI--VPNILSSFTRLEELYMGSCSI 601 (1085)
Q Consensus 574 ~~~l~~l--p~~~~~~L~~L~~L~L~~~~~ 601 (1085)
| .++.+ |.. ++++++|++|++++|.+
T Consensus 518 N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 518 N-RLQQSAAIQP-LVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp S-CCCSSSTTGG-GGGCTTCCEEECTTSGG
T ss_pred C-CCCCCCCcHH-HhcCCCCCEEEecCCcC
Confidence 5 45444 222 35555555555555544
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.04 E-value=7.8e-10 Score=109.34 Aligned_cols=119 Identities=22% Similarity=0.336 Sum_probs=102.7
Q ss_pred cCccccCCCccccccceEEEeeccCccccccc--CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC
Q 037935 479 NDAVWEWPDGDALKKCYAISLLNSSIHEVSLE--FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL 556 (1085)
Q Consensus 479 ~~~~~~~~~~~~~~~~r~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l 556 (1085)
+..+...+ ......+++|++.+|.+..++.. ..+++|++|++.+|. +..++...|..+++|++|++++|.++.+
T Consensus 16 ~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 91 (177)
T 2o6r_A 16 SKGLTSVP-TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ---IQSLPDGVFDKLTKLTILYLHENKLQSL 91 (177)
T ss_dssp SSCCSSCC-TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCccCC-CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc---ceEeChhHccCCCccCEEECCCCCcccc
Confidence 33444444 34557899999999999988764 378999999999997 7788888899999999999999999998
Q ss_pred chh-hhccccccEEeccCcccccccchhhhhccccCCEEeccCCCcc
Q 037935 557 PSS-IGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSIK 602 (1085)
Q Consensus 557 p~~-i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~ 602 (1085)
|.. ++++++|++|++++| .++.+|..++.++++|++|++++|.+.
T Consensus 92 ~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 92 PNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 754 689999999999999 999999988899999999999999874
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=9.3e-10 Score=129.48 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=112.3
Q ss_pred EEEeeccCcccccccCCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcc
Q 037935 496 AISLLNSSIHEVSLEFECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCL 575 (1085)
Q Consensus 496 ~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~ 575 (1085)
.+.+.+|.+..++. ..|++|++++|. +..+|. |.++++|++|+|++|.++.+|..++++++|++|+|++|
T Consensus 427 ~l~l~~n~i~~l~~----~~L~~L~Ls~n~---l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N- 496 (567)
T 1dce_A 427 SKFLLENSVLKMEY----ADVRVLHLAHKD---LTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN- 496 (567)
T ss_dssp HHHHHHHHHHHHHH----TTCSEEECTTSC---CSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-
T ss_pred hhhhhcccccccCc----cCceEEEecCCC---CCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-
Confidence 33344455555543 359999999997 677886 89999999999999999999999999999999999999
Q ss_pred cccccchhhhhccccCCEEeccCCCcchhhcccCCcccccc-HHHhhcCCCCcEEEEEeccCCCCCCcc-----cccccc
Q 037935 576 QLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNAS-LDELMHLQRLTTLEIDVEDDSILPDGL-----FTKKLE 649 (1085)
Q Consensus 576 ~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~-----~l~~L~ 649 (1085)
.++.+| . ++++++|++|+|++|.+. ... +..++.+++|+.|++++|.+..+|... .+++|+
T Consensus 497 ~l~~lp-~-l~~l~~L~~L~Ls~N~l~-----------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 497 ALENVD-G-VANLPRLQELLLCNNRLQ-----------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp CCCCCG-G-GTTCSSCCEEECCSSCCC-----------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCCc-c-cCCCCCCcEEECCCCCCC-----------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 999998 4 699999999999999983 333 678999999999999999998887654 367787
Q ss_pred eee
Q 037935 650 RFD 652 (1085)
Q Consensus 650 ~L~ 652 (1085)
.|+
T Consensus 564 ~L~ 566 (567)
T 1dce_A 564 SIL 566 (567)
T ss_dssp EEE
T ss_pred ccC
Confidence 775
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.98 E-value=2.5e-10 Score=138.96 Aligned_cols=109 Identities=23% Similarity=0.242 Sum_probs=62.8
Q ss_pred CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccC
Q 037935 512 ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRL 591 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L 591 (1085)
.++.|+.|++++|. +..+|..+| ++++|++|+|++|.|+.+|..|++|++|++|+|++| .++.+|..+ ++|++|
T Consensus 222 ~l~~L~~L~Ls~n~---l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~-~~l~~L 295 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ---IFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAEL-GSCFQL 295 (727)
T ss_dssp CCCCCCEEECTTSC---CSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSG-GGGTTC
T ss_pred cCCCCcEEECCCCC---CCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhh-cCCCCC
Confidence 45566666666555 445555544 466666666666666666666666666666666666 565665553 666666
Q ss_pred CEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCC
Q 037935 592 EELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSI 638 (1085)
Q Consensus 592 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 638 (1085)
++|+|++|.+. ..+..+++|++|++|++++|.+..
T Consensus 296 ~~L~L~~N~l~------------~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 296 KYFYFFDNMVT------------TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SEEECCSSCCC------------CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CEEECCCCCCC------------ccChhhhcCCCccEEeCCCCccCC
Confidence 66666666552 122335556666666666665543
No 146
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.97 E-value=5.3e-08 Score=110.05 Aligned_cols=267 Identities=14% Similarity=0.110 Sum_probs=161.5
Q ss_pred CccccchHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhcc---CC-CEEEEEEeCCCcCHHHHHH
Q 037935 160 YEAFESRVSTLKSIQNALT----DVNVSIIGVYGMGGIGKTTLVKEFARQAREKK---LF-DRVVFSEVSQTPDIKKIQG 231 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~~ 231 (1085)
++.++||+.+++++.+++. ....+.+.|+|++|+||||+|+.+++...... .. ...+|+++....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 3679999999999999885 24567899999999999999999998764320 11 2467888888889999999
Q ss_pred HHHHHhCCCCCC--chHHHHHHHHHHHHH-cCCcEEEEEeCCCCcccc----cccccccC--CC---CCCc---------
Q 037935 232 EIAEKLGLELSD--EAEYRRASRLYERLK-NENKILVILDNIWKYLDL----DTIGIPFG--ND---HEGY--------- 290 (1085)
Q Consensus 232 ~i~~~l~~~~~~--~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~~~~----~~~~~~~~--~~---~~gs--------- 290 (1085)
.++.+++..... ....+....+.+.+. .+++.+||+||++..... +.+...+. .. ..+.
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 999999764322 223333455555553 356899999999864211 11110000 00 1111
Q ss_pred -----------------EEEecCCCHHHHHHHHHHhcCCC-CCCCCchHHHHHHHHHhC---CchHHH-HHHHHHHh---
Q 037935 291 -----------------NFLIGNLSEEEAWRLFKIMNGDD-VENCKFKPTAINVAQACG---GLPIAL-TTVARALR--- 345 (1085)
Q Consensus 291 -----------------~ilv~~l~~~~~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~~---glPlai-~~~~~~l~--- 345 (1085)
.|-+.|++.++..+++..++... ....-..+..+.+++.++ |.|..+ .++.....
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 22238999999999998875210 011112345678888888 999433 33222221
Q ss_pred --c---CCHHHHHHHHHHhcCCCCCCCCCCcccchhhHHHHHhcCChHHHHHHHHhcc-ccC-CC-CCHHHHHHHH----
Q 037935 346 --N---KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCS-LIG-NS-FYLIDLLRYS---- 413 (1085)
Q Consensus 346 --~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s-~fp-~~-i~~~~li~~w---- 413 (1085)
+ .+.+.+..+++... ...+.-++..|++ +.+..+..++ ++. ++ +....+.+..
T Consensus 258 ~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 258 RRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 1 26777777766431 1234556788986 4454444444 332 22 5556444432
Q ss_pred hhcCCCCCCchHHHHHHHHHHHHHHHhHccccee
Q 037935 414 MGLGLFHGVNKMEDARNKLYALVHELRDCCLLLE 447 (1085)
Q Consensus 414 ~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 447 (1085)
-..|. .. .+ ...+.++++.|...+++..
T Consensus 323 ~~~~~-~~-~~----~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 323 STLGL-EH-VT----LRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHTTC-CC-CC----HHHHHHHHHHHHHTTSEEE
T ss_pred HhcCC-CC-CC----HHHHHHHHHHHHhCCCeEE
Confidence 22231 11 11 1233456889999999875
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=7.2e-10 Score=108.76 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=92.1
Q ss_pred cceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccccEEeccCcccccccchhhhhccccCCEE
Q 037935 516 LEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEEL 594 (1085)
Q Consensus 516 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L 594 (1085)
-+.+++.++. ...+|..++ ++|++|+|++|.++.+ |..|+++++|++|+|++| .++.+|..+|.++++|++|
T Consensus 14 ~~~l~~~~n~---l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 14 QTLVNCQNIR---LASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SSEEECCSSC---CSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CcEEEeCCCC---CCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEE
Confidence 3678888887 678887643 7899999999999998 568999999999999999 9999999888999999999
Q ss_pred eccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCc
Q 037935 595 YMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDG 642 (1085)
Q Consensus 595 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 642 (1085)
+|++|.+... ....+..+++|++|++++|.+...+..
T Consensus 87 ~L~~N~l~~l-----------~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 87 DLNDNHLKSI-----------PRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp ECCSSCCCCC-----------CTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred ECCCCcccee-----------CHHHhccccCCCEEEeCCCCccccccc
Confidence 9999998422 223478899999999999988766553
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=3.4e-11 Score=121.66 Aligned_cols=128 Identities=18% Similarity=0.187 Sum_probs=99.4
Q ss_pred ceEEEeecc--CcccccccC-CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEe
Q 037935 494 CYAISLLNS--SIHEVSLEF-ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLD 570 (1085)
Q Consensus 494 ~r~Lsl~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~ 570 (1085)
++...+.+. .++.++..+ .+++|++|++++|. +..+| .|.++++|++|++++|.++.+|..+..+++|++|+
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~---l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN---IEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE---ESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC---Ccccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence 444444443 455555443 78899999999887 56677 47889999999999999999998888889999999
Q ss_pred ccCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCC
Q 037935 571 LTDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSIL 639 (1085)
Q Consensus 571 Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 639 (1085)
+++| .++.+|. ++++++|++|++++|.+... ..+..+..+++|++|++++|.+...
T Consensus 100 L~~N-~l~~l~~--~~~l~~L~~L~l~~N~i~~~----------~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 100 ISYN-QIASLSG--IEKLVNLRVLYMSNNKITNW----------GEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEE-ECCCHHH--HHHHHHSSEEEESEEECCCH----------HHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CcCC-cCCcCCc--cccCCCCCEEECCCCcCCch----------hHHHHHhcCCCCCEEEecCCccccc
Confidence 9999 8888873 68999999999999987311 1234688899999999998877544
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=9.4e-10 Score=107.60 Aligned_cols=109 Identities=19% Similarity=0.218 Sum_probs=91.5
Q ss_pred CcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCC-chhhhccccccEEeccCcccccccchhhhhccccCCE
Q 037935 515 QLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSL-PSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEE 593 (1085)
Q Consensus 515 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~ 593 (1085)
..++++++++. ...+|..+ .++|++|+|++|.|+.+ |..|+++++|++|+|++| .++.+|++.|.++++|++
T Consensus 10 ~~~~l~~s~n~---l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDCSGKS---LASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEECTTSC---CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEeCCCC---cCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCE
Confidence 35788898887 67788754 37899999999999998 567999999999999999 999999998899999999
Q ss_pred EeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCC
Q 037935 594 LYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPD 641 (1085)
Q Consensus 594 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 641 (1085)
|+|++|.+.. .....+..+++|++|++++|.+...+.
T Consensus 83 L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 83 LSLNDNQLKS-----------IPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp EECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred EECCCCccCE-----------eCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999843 233457889999999999998765543
No 150
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.94 E-value=1.5e-08 Score=114.57 Aligned_cols=267 Identities=15% Similarity=0.128 Sum_probs=157.7
Q ss_pred CccccchHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccC-CCEEEEEEeCCCcCHHHHHHHHH
Q 037935 160 YEAFESRVSTLKSIQNALT----DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKL-FDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
++.|+||+.+++.+.+++. ....+.+.|+|++|+||||||+.+++....... -..++|+++....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999886 345678999999999999999999997754311 12477888877778888888888
Q ss_pred HHhCCCCCC--chHHHHHHHHHHHHHc-CCcEEEEEeCCCCcc------cccccccccCC-CC-----------------
Q 037935 235 EKLGLELSD--EAEYRRASRLYERLKN-ENKILVILDNIWKYL------DLDTIGIPFGN-DH----------------- 287 (1085)
Q Consensus 235 ~~l~~~~~~--~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~~------~~~~~~~~~~~-~~----------------- 287 (1085)
.+++..... ....+....+.+.+.. +++.+||+|+++... .+..+...+.. ..
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 887654321 1223334445555542 458999999987532 11111100100 00
Q ss_pred ---------CCcEEEecCCCHHHHHHHHHHhcCCC-CCCCCchHHHHHHHHHhC---CchHHHHHHHHH-Hh-----c--
Q 037935 288 ---------EGYNFLIGNLSEEEAWRLFKIMNGDD-VENCKFKPTAINVAQACG---GLPIALTTVARA-LR-----N-- 346 (1085)
Q Consensus 288 ---------~gs~ilv~~l~~~~~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~~---glPlai~~~~~~-l~-----~-- 346 (1085)
.+..|-+.|++.++..+++..++... ....-..+..+.+++.++ |.|..+..+... .. +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 01234449999999999999865211 112233567788888887 998744333222 11 1
Q ss_pred -CCHHHHHHHHHHhcCCCCCCCCCCcccchhhHHHHHhcCChHHHHHHHHhcccc---CCC-CCHHHHHHHH----hhcC
Q 037935 347 -KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLI---GNS-FYLIDLLRYS----MGLG 417 (1085)
Q Consensus 347 -~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~f---p~~-i~~~~li~~w----~~~g 417 (1085)
.+.+.++.+++... ...+.-.+..+|+ ..+..+..++.. .+. +....+.+.. -..|
T Consensus 259 ~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 259 KVKEEYVYMAKEEIE--------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp SCCHHHHHHHHHHHH--------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHh--------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 26666666665421 1245556778886 455555544422 112 4444443321 1112
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhHccccee
Q 037935 418 LFHGVNKMEDARNKLYALVHELRDCCLLLE 447 (1085)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 447 (1085)
. .. .+. ..+..+++.|...+++..
T Consensus 324 ~-~~-~~~----~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 V-EA-VTQ----RRVSDIINELDMVGILTA 347 (386)
T ss_dssp C-CC-CCH----HHHHHHHHHHHHHTSEEE
T ss_pred C-CC-CCH----HHHHHHHHHHHhCCCEEE
Confidence 1 11 011 233446788888998864
No 151
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.92 E-value=1.2e-07 Score=107.21 Aligned_cols=266 Identities=14% Similarity=0.096 Sum_probs=162.1
Q ss_pred ccccchHHHHHHHHHHhcc----CCce--EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHH
Q 037935 161 EAFESRVSTLKSIQNALTD----VNVS--IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
+.++||+.+++++.+++.. .... .+.|+|++|+||||+++.+++....... ..++|++++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 6799999999999988863 2333 8999999999999999999998764311 2477888888888999999999
Q ss_pred HHhCCCCCC--chHHHHHHHHHHHHH-cCCcEEEEEeCCCCcc--cccccccccCCCC----CCc---------------
Q 037935 235 EKLGLELSD--EAEYRRASRLYERLK-NENKILVILDNIWKYL--DLDTIGIPFGNDH----EGY--------------- 290 (1085)
Q Consensus 235 ~~l~~~~~~--~~~~~~~~~~~~~l~-~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~----~gs--------------- 290 (1085)
..++..... .........+.+.+. .+++.+||+||++... .+..+...+.... .+.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 998764321 122333334444433 3678999999997641 1122211110000 111
Q ss_pred -----------EEEecCCCHHHHHHHHHHhcCCC-CCCCCchHHHHHHHHHh---------CCchHHHHHHHHHHh----
Q 037935 291 -----------NFLIGNLSEEEAWRLFKIMNGDD-VENCKFKPTAINVAQAC---------GGLPIALTTVARALR---- 345 (1085)
Q Consensus 291 -----------~ilv~~l~~~~~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~---------~glPlai~~~~~~l~---- 345 (1085)
.|-+.|++.++..+++...+... ....--.+....+++.+ +|.|..+..+.....
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 23348999999999998876310 01122356788899999 788754444333211
Q ss_pred --c---CCHHHHHHHHHHhcCCCCCCCCCCcccchhhHHHHHhcCChHHHHHHHHhccccC---C--CCCHHHHHHHHhh
Q 037935 346 --N---KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIG---N--SFYLIDLLRYSMG 415 (1085)
Q Consensus 346 --~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp---~--~i~~~~li~~w~~ 415 (1085)
+ .+.+....+.+.... ..+.-.+..|+. +.+.++..++.+. . .+....+...+..
T Consensus 256 ~~~~~~i~~~~v~~~~~~~~~--------------~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKEVLF--------------GISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HTTCSSCCHHHHHHHHHHHSC--------------CCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHHHHhh--------------hhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 1 145555555554321 123344677886 5666666666443 1 2555555554321
Q ss_pred ----cCCCCCCchHHHHHHHHHHHHHHHhHcccceec
Q 037935 416 ----LGLFHGVNKMEDARNKLYALVHELRDCCLLLEG 448 (1085)
Q Consensus 416 ----~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 448 (1085)
.|... -+ ...+.+++++|...+++...
T Consensus 321 ~~~~~~~~~--~~----~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 321 VCEEYGERP--RV----HSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHTTCCC--CC----HHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHcCCCC--CC----HHHHHHHHHHHHhCCCeEEe
Confidence 22111 01 13345678999999999753
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.91 E-value=1.5e-10 Score=116.86 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=75.8
Q ss_pred CcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccccccEEeccCcccccccchhhhhccccCCEE
Q 037935 515 QLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEEL 594 (1085)
Q Consensus 515 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L 594 (1085)
.++.+.+.+... .+..+|. .|..+++|++|++++|.++.+| .++++++|++|++++| .++.+|.. +..+++|++|
T Consensus 24 ~l~~~~l~~~~~-~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~~~L~~L 98 (198)
T 1ds9_A 24 EAEKVELHGMIP-PIEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENL-DAVADTLEEL 98 (198)
T ss_dssp TCSEEECCBCCT-TCCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSH-HHHHHHCSEE
T ss_pred chheeEeccccC-cHhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-Ccccccch-hhcCCcCCEE
Confidence 444555544321 1344444 4777888888888888888888 7888888888888888 88888865 4777888888
Q ss_pred eccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCC
Q 037935 595 YMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSI 638 (1085)
Q Consensus 595 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 638 (1085)
++++|.+. .+..+..+++|++|++++|.+..
T Consensus 99 ~L~~N~l~-------------~l~~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 99 WISYNQIA-------------SLSGIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp EEEEEECC-------------CHHHHHHHHHSSEEEESEEECCC
T ss_pred ECcCCcCC-------------cCCccccCCCCCEEECCCCcCCc
Confidence 88888763 12356777778888887776654
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.85 E-value=2.1e-08 Score=105.42 Aligned_cols=177 Identities=12% Similarity=0.143 Sum_probs=102.1
Q ss_pred CccccchHHHHHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhC
Q 037935 160 YEAFESRVSTLKSIQNALTDVN-VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLG 238 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 238 (1085)
...++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++.......+.. ..+... .. ...+.....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~~---~~-~~~~~~~~~ 94 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC---DN-CREIEQGRF 94 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSCS---HH-HHHHHTTCC
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCccc---HH-HHHHhccCC
Confidence 3568999999999999987543 358899999999999999999987754321100 000000 00 000000000
Q ss_pred -----CCCCCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--ccccccccccCCCCCCcEEE--------------
Q 037935 239 -----LELSDEAEYRRASRLYERLK----NENKILVILDNIWKY--LDLDTIGIPFGNDHEGYNFL-------------- 293 (1085)
Q Consensus 239 -----~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~il-------------- 293 (1085)
..............+.+.+. .+++.+||+||++.. ..++.+...+.....+.+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 00000011111222222221 356899999999763 23333333222222233333
Q ss_pred -------ecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHHHH
Q 037935 294 -------IGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVARAL 344 (1085)
Q Consensus 294 -------v~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 344 (1085)
+.+++.++..+++...+.... ..--.+....|++.|+|.|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 389999999999998773211 12225677899999999999988776543
No 154
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.84 E-value=2.8e-08 Score=102.55 Aligned_cols=168 Identities=11% Similarity=0.064 Sum_probs=102.4
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
...++||+..++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 35689999999999999986655569999999999999999999876433111224445554444433332222211111
Q ss_pred CCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCCCcE---------------------EEecC
Q 037935 240 ELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHEGYN---------------------FLIGN 296 (1085)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~---------------------ilv~~ 296 (1085)
.. ...+++.+||+||++... .++.+...+.....+.+ +-+.+
T Consensus 96 ~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~ 160 (226)
T 2chg_A 96 AP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKP 160 (226)
T ss_dssp CC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred cC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCC
Confidence 00 002567888888887642 22222222211122222 33389
Q ss_pred CCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHHH
Q 037935 297 LSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVARA 343 (1085)
Q Consensus 297 l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~ 343 (1085)
++.++..+++...+.... ..--.+....+++.++|.|..+..+...
T Consensus 161 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEG-VKITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp CCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999988763111 1122567788999999999866554443
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.71 E-value=1.5e-07 Score=105.56 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=52.0
Q ss_pred CCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEeccCcccccccchhhhhccccC
Q 037935 513 CPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRL 591 (1085)
Q Consensus 513 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L 591 (1085)
+..+..+.+... ...++...|.++ +|+.+++.++ ++.++ .+|.+ .+|+.+.+.. .++.++...|.++.+|
T Consensus 112 ~~~l~~i~ip~~----i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 112 LKGYNEIILPNS----VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp CSSCSEEECCTT----CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTC
T ss_pred cCCccEEEECCc----cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccC
Confidence 355556555443 456666677764 5777777655 55554 34555 3577777775 5677777777777777
Q ss_pred CEEeccCCCcc
Q 037935 592 EELYMGSCSIK 602 (1085)
Q Consensus 592 ~~L~L~~~~~~ 602 (1085)
+.+++.+|.+.
T Consensus 183 ~~l~l~~n~l~ 193 (401)
T 4fdw_A 183 KKADLSKTKIT 193 (401)
T ss_dssp CEEECTTSCCS
T ss_pred CeeecCCCcce
Confidence 77777776653
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.67 E-value=2.9e-07 Score=103.93 Aligned_cols=68 Identities=16% Similarity=0.283 Sum_probs=51.3
Q ss_pred ccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEeccCcccccccchhhhhccccCCEEeccCC
Q 037935 529 ELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSC 599 (1085)
Q Consensus 529 ~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~ 599 (1085)
...|...+|.++.+|+.+.|.. .++.++ .+|.++.+|+.+++.. .++.++...|.++.+|+.+.+..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLM 127 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCc
Confidence 5667788888888899888864 366664 4678888888888876 477788777888888877655443
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=3.9e-08 Score=109.14 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=64.3
Q ss_pred EEeecc-CcccccccCCCCCcceeeecc-CCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEeccC
Q 037935 497 ISLLNS-SIHEVSLEFECPQLEFLHIDP-KITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTD 573 (1085)
Q Consensus 497 Lsl~~~-~~~~l~~~~~~~~Lr~L~l~~-~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~ 573 (1085)
++.+++ .+..+|....+.+|+.|+|++ |. +..+++..|.++++|++|+|++|.|+.+| ..|++|++|++|+|++
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQH---LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCC---CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455555 566666622556677777765 54 56666666677777777777777776654 3566777777777777
Q ss_pred cccccccchhhhhccccCCEEeccCCCc
Q 037935 574 CLQLKFIVPNILSSFTRLEELYMGSCSI 601 (1085)
Q Consensus 574 ~~~l~~lp~~~~~~L~~L~~L~L~~~~~ 601 (1085)
| .++.+|+.+|..+. |++|+|.+|.+
T Consensus 90 N-~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp S-CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred C-ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 7 67777766555444 77777776665
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.61 E-value=4.7e-07 Score=96.21 Aligned_cols=113 Identities=11% Similarity=0.102 Sum_probs=80.7
Q ss_pred cccchHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccC---C-C-EEEEEEeCCCcCHHHHHHH
Q 037935 162 AFESRVSTLKSIQNALT----DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKL---F-D-RVVFSEVSQTPDIKKIQGE 232 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f-~-~~~wv~~~~~~~~~~~~~~ 232 (1085)
.+.|||+++++|...|. .+..+.+.|+|++|+|||++++.|.++...... . + .++.|++..-.+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 37899999999988776 466788999999999999999999998864211 1 1 3567777777889999999
Q ss_pred HHHHhCCCCC-CchHHHHHHHHHHHH--HcCCcEEEEEeCCCCcc
Q 037935 233 IAEKLGLELS-DEAEYRRASRLYERL--KNENKILVILDNIWKYL 274 (1085)
Q Consensus 233 i~~~l~~~~~-~~~~~~~~~~~~~~l--~~~~~~LlvlDdv~~~~ 274 (1085)
|++++.+... .......+...++.+ ..++++++++|+++...
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 9999965321 111223344455543 24678999999998753
No 159
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=2.8e-07 Score=101.07 Aligned_cols=168 Identities=17% Similarity=0.128 Sum_probs=101.1
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
.+.++||+..++.+.+++..+..+.+.|+|++|+||||+|+.+++.......-..+++++.+.......+ +++++.+..
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~ 98 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQ 98 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHHh
Confidence 3568999999999999988766666999999999999999999998643211112444544443333222 222221110
Q ss_pred CCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc--ccccccccccCCCCCCcEE---------------------EecC
Q 037935 240 ELSDEAEYRRASRLYERLKNENKILVILDNIWKY--LDLDTIGIPFGNDHEGYNF---------------------LIGN 296 (1085)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~i---------------------lv~~ 296 (1085)
... .+..+++.++|+||++.. ..++.+...+.....+.++ -+.+
T Consensus 99 ~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~ 165 (323)
T 1sxj_B 99 KKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSK 165 (323)
T ss_dssp BCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred ccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecC
Confidence 000 000256889999998764 2233332222221222232 2389
Q ss_pred CCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHH-HHHHHH
Q 037935 297 LSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIA-LTTVAR 342 (1085)
Q Consensus 297 l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla-i~~~~~ 342 (1085)
++.++..+++...+.... ..--.+....+++.++|.|.. +..+..
T Consensus 166 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 166 LSDEDVLKRLLQIIKLED-VKYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999988763110 112256778999999999954 444433
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.52 E-value=8.8e-08 Score=106.27 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=78.9
Q ss_pred eeeeccCCCccccccChhhhcCCCcceEEEecC-CcccCCc-hhhhccccccEEeccCcccccccchhhhhccccCCEEe
Q 037935 518 FLHIDPKITFAELNIPDNFFKGMKKLRVVDLTR-VRLFSLP-SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELY 595 (1085)
Q Consensus 518 ~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~-~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~ 595 (1085)
.+++.+++. ...+|. +..+++|++|+|++ |.++.+| ..|++|++|++|+|++| .++.+|+..|++|++|++|+
T Consensus 12 ~v~~~~~n~--l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGA--LDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCC--CTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCC--CCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEe
Confidence 456666522 667887 78888899999986 8888876 57888999999999998 88888888788899999999
Q ss_pred ccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCC
Q 037935 596 MGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSI 638 (1085)
Q Consensus 596 L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 638 (1085)
|++|.+...++ ..+..++ |+.|++.+|.+..
T Consensus 87 l~~N~l~~~~~-----------~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSW-----------KTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCS-----------TTTCSCC-CCEEECCSSCCCC
T ss_pred CCCCccceeCH-----------HHcccCC-ceEEEeeCCCccC
Confidence 99998743322 2234444 8888888887653
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.50 E-value=1.8e-06 Score=96.79 Aligned_cols=234 Identities=14% Similarity=0.158 Sum_probs=129.7
Q ss_pred ceEEEeeccCccccccc-CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEec
Q 037935 494 CYAISLLNSSIHEVSLE-FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDL 571 (1085)
Q Consensus 494 ~r~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L 571 (1085)
+..+.+.+ .+..++.. +.-.+|+.+.+..+ ...++...|.++ +|+.+.+.. .++.++ .+|.+|.+|+.+++
T Consensus 115 l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~----i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 115 YNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG----LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp CSEEECCT-TCCEECTTTTTTCCCSEEECCTT----CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred ccEEEECC-ccCEehHhhcccCCccEEEeCCC----ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44444433 34444432 22236777777554 556777777774 578887775 566654 56777888888888
Q ss_pred cCcccccccchhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc-cccccce
Q 037935 572 TDCLQLKFIVPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL-FTKKLER 650 (1085)
Q Consensus 572 s~~~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~l~~L~~ 650 (1085)
++| .++.+|.+.|. ..+|+.+.+..+ +. ......|.++++|+.+.+..+ +..++... .-.+|+.
T Consensus 188 ~~n-~l~~I~~~aF~-~~~L~~l~lp~~-l~-----------~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~ 252 (401)
T 4fdw_A 188 SKT-KITKLPASTFV-YAGIEEVLLPVT-LK-----------EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITT 252 (401)
T ss_dssp TTS-CCSEECTTTTT-TCCCSEEECCTT-CC-----------EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSE
T ss_pred CCC-cceEechhhEe-ecccCEEEeCCc-hh-----------eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccE
Confidence 877 77888877765 577888877644 32 222345677777777777653 45555444 2256666
Q ss_pred eeEEecCCCcccccccccccccccccccceeehhhhhhcccccccccccccCCCCCcccccccccEEEEcCCCCC----c
Q 037935 651 FDISIGDGSFDSTKIIGNDWFQTFNIQSIYIFCIVMALELNAINVDEIWHYNQLPAMVPCFQSLTRLIVWGCDKL----K 726 (1085)
Q Consensus 651 L~l~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~L~~l~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l----~ 726 (1085)
+.+... +.. .-+..|..+++|+.+.+.++... .
T Consensus 253 i~lp~~-------------------i~~------------------------I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 253 VKLPNG-------------------VTN------------------------IASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp EEEETT-------------------CCE------------------------ECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred EEeCCC-------------------ccE------------------------EChhHhhCCCCCCEEEeCCccccCCccc
Confidence 665210 000 01223455667777776654221 1
Q ss_pred cccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCccccccCCCcccCCCcccceeeccC
Q 037935 727 YIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNC 806 (1085)
Q Consensus 727 ~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 806 (1085)
.+ +...+..+++|+.+.+.+. +..+....+ ..+++|+.+.|.+ ++..+.... +..+ +|+.+.+.+.
T Consensus 290 ~I-~~~aF~~c~~L~~l~l~~~--i~~I~~~aF-------~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 290 MI-HPYCLEGCPKLARFEIPES--IRILGQGLL-------GGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGT 355 (401)
T ss_dssp EE-CTTTTTTCTTCCEECCCTT--CCEECTTTT-------TTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCS
T ss_pred EE-CHHHhhCCccCCeEEeCCc--eEEEhhhhh-------cCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCC
Confidence 22 2345666777777776532 333322211 1345666666643 344433322 2334 6777776655
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.45 E-value=1.9e-06 Score=97.18 Aligned_cols=129 Identities=14% Similarity=0.160 Sum_probs=86.1
Q ss_pred ccccccc--CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEeccCccccccc
Q 037935 504 IHEVSLE--FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDCLQLKFI 580 (1085)
Q Consensus 504 ~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~l 580 (1085)
+..+... ..|.+|+++.+..+ ...+.+..|.++.+|+.+++..+ ++.++ .++.++..|+.+.+.. .+..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~----i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--~l~~i 131 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST----VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL--MLKSI 131 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT----CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEE
T ss_pred EeEhHHHHhhCCCCceEEEeCCC----ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC--ceeee
Confidence 3445443 37899999999643 67888889999999999999765 66664 5778899999888876 47777
Q ss_pred chhhhhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCCCCCCcc--cccccceeeE
Q 037935 581 VPNILSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDSILPDGL--FTKKLERFDI 653 (1085)
Q Consensus 581 p~~~~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l 653 (1085)
....|.++..+.......... .....|.++++|+.+.+..+ +..++... ...+|+.+.+
T Consensus 132 ~~~aF~~~~~~~~~~~~~~~~-------------i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGVTV-------------IGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp CTTTTTTCCCSEEECCTTCCE-------------ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cceeeecccccccccCccccc-------------cchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEc
Confidence 777777766544443332221 12245778888888887643 33444443 4455665554
No 163
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=8e-07 Score=97.60 Aligned_cols=167 Identities=12% Similarity=0.103 Sum_probs=99.4
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
-+.++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++.......-...+.+..+.......+ ++.+..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 99 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKE--- 99 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHHHH---
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHHHH---
Confidence 3568999999999999988766667999999999999999999998643210011333443321111111 111110
Q ss_pred CCCCchHHHHHHHHHHH--HHcCCcEEEEEeCCCCc--ccccccccccCCCCCCcEEEe---------------------
Q 037935 240 ELSDEAEYRRASRLYER--LKNENKILVILDNIWKY--LDLDTIGIPFGNDHEGYNFLI--------------------- 294 (1085)
Q Consensus 240 ~~~~~~~~~~~~~~~~~--l~~~~~~LlvlDdv~~~--~~~~~~~~~~~~~~~gs~ilv--------------------- 294 (1085)
.... +..+++.++|+||++.. ..++.+...+.....+.++++
T Consensus 100 -------------~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~ 166 (327)
T 1iqp_A 100 -------------FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRF 166 (327)
T ss_dssp -------------HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEEC
T ss_pred -------------HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEe
Confidence 0000 11256788889998764 223333222222122333332
Q ss_pred cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHHHH
Q 037935 295 GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVARAL 344 (1085)
Q Consensus 295 ~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 344 (1085)
.+++.++..+++...+.... ..--.+....|++.++|.|..+..+...+
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYIAENEG-LELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp CCCCHHHHHHHHHHHHHTTT-CEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 88999999999988763211 11225677889999999998765544433
No 164
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.39 E-value=6.5e-07 Score=98.10 Aligned_cols=156 Identities=14% Similarity=0.117 Sum_probs=94.4
Q ss_pred CccccchHHHHHHHHHHhc-----cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHH
Q 037935 160 YEAFESRVSTLKSIQNALT-----DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
-+.++|++..++.+..++. ......+.|+|++|+|||++|+.+++.... ..++++.+......++...+.
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAAILA 85 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHHHHT
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHHHHH
Confidence 3568999999888887775 134467889999999999999999987642 234555544333333322221
Q ss_pred HHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccc-----------------------------------
Q 037935 235 EKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLD----------------------------------- 277 (1085)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~----------------------------------- 277 (1085)
..+ .+..+|++||++... ..+
T Consensus 86 ~~~----------------------~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 86 NSL----------------------EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp TTC----------------------CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred Hhc----------------------cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 101 233344555544321 000
Q ss_pred ------ccccccCCCCCCcEEEecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHHHH
Q 037935 278 ------TIGIPFGNDHEGYNFLIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVARAL 344 (1085)
Q Consensus 278 ------~~~~~~~~~~~gs~ilv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 344 (1085)
.+...+.. .-+..+-+.+++.++..+++...+.... ..--.+....+++.++|.|..+..+...+
T Consensus 144 ~t~~~~~~~~~l~~-R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 144 ATTRPGLITAPLLS-RFGIVEHLEYYTPEELAQGVMRDARLLG-VRITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EESCCSSCSCSTTT-TCSCEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred eCCCcccCCHHHHh-cccEEEecCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 01011110 1123455699999999999988773211 12235678899999999998877665554
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.38 E-value=6.5e-08 Score=107.39 Aligned_cols=88 Identities=16% Similarity=0.083 Sum_probs=41.6
Q ss_pred CcceEEEecCCcccC--CchhhhccccccEEeccCcccccccchhhhh-----ccccCCEEeccCCCcchhhcccCCccc
Q 037935 541 KKLRVVDLTRVRLFS--LPSSIGQLTKLRMLDLTDCLQLKFIVPNILS-----SFTRLEELYMGSCSIKWEVRKGNSERS 613 (1085)
Q Consensus 541 ~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~-----~L~~L~~L~L~~~~~~~~~~~~~~~~~ 613 (1085)
++|++|+|++|.++. +..-...+.+|++|+|++| .++......++ ..++|++|+|++|.+.... .
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~-------~ 172 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG-------V 172 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH-------H
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH-------H
Confidence 456666666665543 1112233455666666666 55443322221 2355666666666552110 0
Q ss_pred cccHHHhhcCCCCcEEEEEeccC
Q 037935 614 NASLDELMHLQRLTTLEIDVEDD 636 (1085)
Q Consensus 614 ~~~~~~l~~L~~L~~L~l~~~~~ 636 (1085)
......+..+++|++|++++|.+
T Consensus 173 ~~l~~~L~~~~~L~~L~Ls~N~l 195 (372)
T 3un9_A 173 AVLMEGLAGNTSVTHLSLLHTGL 195 (372)
T ss_dssp HHHHHHHHTCSSCCEEECTTSSC
T ss_pred HHHHHHHhcCCCcCEEeCCCCCC
Confidence 11222334555566666655543
No 166
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=1.6e-07 Score=89.76 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=20.7
Q ss_pred hhhceeeeeccccccccCCCCcccccCccEEEeccccCccc
Q 037935 945 QHLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMN 985 (1085)
Q Consensus 945 ~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~ 985 (1085)
++|++|++++|+++++.--..+..+++|++|+|++|+++++
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 45555555555544332111234455566666666665554
No 167
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=5.2e-07 Score=86.23 Aligned_cols=90 Identities=14% Similarity=0.235 Sum_probs=49.1
Q ss_pred hhceeeeeccccccccCCCCcccccCccEEEeccccCcccccchhhhh---hcccccEEEEcCCcccccccccccccccc
Q 037935 946 HLQILRVLHCQNLLSLLPSSSVSFRNLTRLETFACKKLMNLLTSSKAK---SLERLVSLRIFGCPAMTEVIISDEDETAN 1022 (1085)
Q Consensus 946 ~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~---~l~~L~~L~i~~c~~l~~l~~~~~~~~~~ 1022 (1085)
.|++|++++|. ++..--..+..+++|++|++++|.++++........ ..++|++|+|++|+++++- ++..
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~------Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK------GIIA 134 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH------HHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH------HHHH
Confidence 46666666664 433222224456677777777777776542222221 1246777777777766553 2211
Q ss_pred cccceeeccccccccccccccce
Q 037935 1023 LKEEIVFSKLSALSLFDLDSLTS 1045 (1085)
Q Consensus 1023 ~~~~~~~~~L~~L~l~~c~~L~~ 1045 (1085)
+ ..+++|++|++++|+.++.
T Consensus 135 L---~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 L---HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp G---GGCTTCCEEEEESCTTCCC
T ss_pred H---hcCCCCCEEECCCCCCCCc
Confidence 1 1256666666666666654
No 168
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.17 E-value=8.8e-06 Score=88.82 Aligned_cols=163 Identities=10% Similarity=0.094 Sum_probs=98.0
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCC-EEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFD-RVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
..++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++...... +. ..+.++.+.......+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~--------- 86 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVVR--------- 86 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTSTTCTTTSS---------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccCCeEEEeCccccChHHHH---------
Confidence 45899999999999998866666699999999999999999998763211 11 12334443321111000
Q ss_pred CCCCchHHHHHHHHHHH--HHcCCcEEEEEeCCCCcc--cccccccccCCCCCCcEEEe---------------------
Q 037935 240 ELSDEAEYRRASRLYER--LKNENKILVILDNIWKYL--DLDTIGIPFGNDHEGYNFLI--------------------- 294 (1085)
Q Consensus 240 ~~~~~~~~~~~~~~~~~--l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs~ilv--------------------- 294 (1085)
+........ +..+++.++|+||++... ..+.+...+.....+.++++
T Consensus 87 --------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~ 158 (319)
T 2chq_A 87 --------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (319)
T ss_dssp --------HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEEC
T ss_pred --------HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEe
Confidence 001111100 112568899999987642 23334333332223333333
Q ss_pred cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHH
Q 037935 295 GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVAR 342 (1085)
Q Consensus 295 ~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 342 (1085)
.+++.++..+++...+.... ..--.+....+++.++|.+..+.....
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~-~~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 159 KPVPKEAMKKRLLEICEKEG-VKITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp CCCCHHHHHHHHHHHHHTTC-CCBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88999999999887763211 112256678889999998876554433
No 169
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.11 E-value=1.5e-05 Score=79.50 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=42.7
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
-+.++||+.+++++.+++.....+.+.|+|++|+|||++|+.+++....
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999988666677899999999999999999997643
No 170
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.11 E-value=8.7e-07 Score=98.29 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=14.9
Q ss_pred CcceEEEecCCcccC-----CchhhhccccccEEeccCc
Q 037935 541 KKLRVVDLTRVRLFS-----LPSSIGQLTKLRMLDLTDC 574 (1085)
Q Consensus 541 ~~Lr~L~Ls~~~i~~-----lp~~i~~L~~L~~L~Ls~~ 574 (1085)
+.|++|+|++|.++. ++..+..+++|++|+|++|
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 444444444444432 2233344444444444444
No 171
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.08 E-value=2e-05 Score=88.17 Aligned_cols=174 Identities=11% Similarity=0.125 Sum_probs=94.8
Q ss_pred ccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 161 EAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
+.++||+..++.+..++..+.. ..+.|+|++|+||||+|+.+.+.......+.. ..+........+...-..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 88 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQGRFV 88 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTSCCS
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhccCCC
Confidence 4589999999999998875443 56889999999999999999987753221100 000000000111000000
Q ss_pred C-----CCCchHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--cccccccccCCCCCC-------------------
Q 037935 240 E-----LSDEAEYRRASRLYERLK----NENKILVILDNIWKYL--DLDTIGIPFGNDHEG------------------- 289 (1085)
Q Consensus 240 ~-----~~~~~~~~~~~~~~~~l~----~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~g------------------- 289 (1085)
. .......+.+..+.+.+. .+++.++|+||++... .++.+...+.....+
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 168 (373)
T 1jr3_A 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 (373)
T ss_dssp SCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHT
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHh
Confidence 0 000000001122222222 2567788888886542 222222222111112
Q ss_pred --cEEEecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHH
Q 037935 290 --YNFLIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVAR 342 (1085)
Q Consensus 290 --s~ilv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 342 (1085)
..+-+.+++.++..+++...+.... ..--.+....|++.++|.|..+..+..
T Consensus 169 r~~~i~~~~l~~~~~~~~l~~~~~~~~-~~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 169 RCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred heeEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2233389999999999987662110 111256678899999999987765543
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.00 E-value=0.00014 Score=77.52 Aligned_cols=49 Identities=27% Similarity=0.324 Sum_probs=40.2
Q ss_pred CCccccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 159 GYEAFESRVSTLKSIQNALTD-------------VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.-+.++|.+..++++.+.+.. ...+.+.|+|++|+|||++|+.+++...
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 345689999999999887641 3456789999999999999999998764
No 173
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.93 E-value=2.6e-05 Score=77.30 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=42.6
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.+.++||+.+++.+.+.+.....+.+.|+|++|+|||++|+.+++....
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999988766677899999999999999999987643
No 174
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.91 E-value=9.6e-05 Score=83.08 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=50.0
Q ss_pred CcceeeeccCCCccccccChhhhcCCCcceEEEecCCc---ccCCc-hhhhccccccEEeccCcccccccchhhhhcccc
Q 037935 515 QLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVR---LFSLP-SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTR 590 (1085)
Q Consensus 515 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~---i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~ 590 (1085)
.|+++.+-.. ...+.+..|.++.+|+.+.+..+. ++.++ .+|.++.+|+.+.+.. .++.++...|.++.+
T Consensus 65 ~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF~~c~~ 138 (394)
T 4gt6_A 65 VLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAFHHCEE 138 (394)
T ss_dssp CCCEEEECTT----CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTTTTCTT
T ss_pred cCEEEEECCC----eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhhhhhcc
Confidence 4677766433 456666777777777777776542 44443 3566667777666655 366666666677777
Q ss_pred CCEEeccCC
Q 037935 591 LEELYMGSC 599 (1085)
Q Consensus 591 L~~L~L~~~ 599 (1085)
|+.+.+..+
T Consensus 139 L~~i~lp~~ 147 (394)
T 4gt6_A 139 LDTVTIPEG 147 (394)
T ss_dssp CCEEECCTT
T ss_pred cccccccce
Confidence 777766543
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.91 E-value=0.00013 Score=82.40 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=96.0
Q ss_pred CccccchHHHH---HHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-cCHHHHHHHHHH
Q 037935 160 YEAFESRVSTL---KSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-PDIKKIQGEIAE 235 (1085)
Q Consensus 160 ~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~ 235 (1085)
-+.++|.+..+ ..+...+..+....+.|+|++|+||||+|+.+.+..... | +.++.. .....+ ++++.
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~--f-----~~l~a~~~~~~~i-r~~~~ 96 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD--V-----ERISAVTSGVKEI-REAIE 96 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE--E-----EEEETTTCCHHHH-HHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC--e-----EEEEeccCCHHHH-HHHHH
Confidence 45689998888 677777777777889999999999999999999976532 2 233221 122221 11111
Q ss_pred HhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCC---------------------CCCcEE
Q 037935 236 KLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGND---------------------HEGYNF 292 (1085)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~---------------------~~gs~i 292 (1085)
........+++.+|++|+++... ..+.+...+..+ .....+
T Consensus 97 ----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~ 160 (447)
T 3pvs_A 97 ----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY 160 (447)
T ss_dssp ----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEE
T ss_pred ----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeEE
Confidence 11111124788999999997642 222222111110 112233
Q ss_pred EecCCCHHHHHHHHHHhcCCC------CCCCCchHHHHHHHHHhCCchHHHHHHHH
Q 037935 293 LIGNLSEEEAWRLFKIMNGDD------VENCKFKPTAINVAQACGGLPIALTTVAR 342 (1085)
Q Consensus 293 lv~~l~~~~~~~lf~~~~~~~------~~~~~~~~~~~~i~~~~~glPlai~~~~~ 342 (1085)
.+.+++.++..+++....... ....--.+....+++.++|.+-.+..+..
T Consensus 161 ~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 161 LLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp ECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 349999999999998876321 11123356778899999998865554433
No 176
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.89 E-value=9.5e-06 Score=89.01 Aligned_cols=64 Identities=16% Similarity=0.292 Sum_probs=32.6
Q ss_pred CCccceeeeccCCceeeecccCC-cCccCCceEEEecCCcccccch----hHHhhccccceEEeecccc
Q 037935 835 LPNLEGLALSGKDITMILQDDFP-QHLFGSLKQLRVGDDDLACFPL----DLLERFHNLEFLYLSDCSY 898 (1085)
Q Consensus 835 l~~L~~L~ls~n~l~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~~~l 898 (1085)
+|+|+.|++++|.+.+.....+. ...+++|++|++++|.++.... ..+.++++|+.|++++|.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 56666666666665432111110 1125666666666666654321 1123456666666666653
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.87 E-value=0.0002 Score=75.22 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=54.5
Q ss_pred ccccchHHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHH
Q 037935 161 EAFESRVSTLKSIQNALT---D---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKK 228 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 228 (1085)
+.++|.+..++.+.+.+. . ...+.+.|+|++|+|||++|+.+++..... .+.++.+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHh---
Confidence 457898888777765542 1 233568899999999999999999976532 33444433111
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 229 IQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 229 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
.... ........+.+......+.+|++||++..
T Consensus 78 -----------~~~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 78 -----------VIGG-LGAARVRSLFKEARARAPCIVYIDEIDAV 110 (262)
T ss_dssp -----------SSTT-HHHHHHHHHHHHHHHTCSEEEEEECC---
T ss_pred -----------hccC-hhHHHHHHHHHHHHhcCCeEEEEeCcchh
Confidence 0011 11122333444444456788888888653
No 178
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.86 E-value=0.0002 Score=80.38 Aligned_cols=91 Identities=18% Similarity=0.197 Sum_probs=54.2
Q ss_pred ccccChhhhcCCC-cceEEEecCCcccCCc-hhhhccccccEEeccCc--ccccccchhhhhccccCCEEeccCCCcchh
Q 037935 529 ELNIPDNFFKGMK-KLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDC--LQLKFIVPNILSSFTRLEELYMGSCSIKWE 604 (1085)
Q Consensus 529 ~~~l~~~~~~~l~-~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~--~~l~~lp~~~~~~L~~L~~L~L~~~~~~~~ 604 (1085)
...|.+..|.+++ .|+.+.+-.+ ++.+. .+|.++.+|+.+.+..+ ..++.++...|.++.+|+.+.+..+--
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~--- 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVT--- 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCS---
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccc---
Confidence 3456666676664 4777777543 55553 46677777777777654 136666666677777777666544321
Q ss_pred hcccCCccccccHHHhhcCCCCcEEEEE
Q 037935 605 VRKGNSERSNASLDELMHLQRLTTLEID 632 (1085)
Q Consensus 605 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 632 (1085)
......+..+.+|+.+.+.
T Consensus 127 ---------~I~~~aF~~c~~L~~i~lp 145 (394)
T 4gt6_A 127 ---------EIDSEAFHHCEELDTVTIP 145 (394)
T ss_dssp ---------EECTTTTTTCTTCCEEECC
T ss_pred ---------eehhhhhhhhccccccccc
Confidence 1122345566677766664
No 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=8.2e-06 Score=89.52 Aligned_cols=168 Identities=19% Similarity=0.160 Sum_probs=100.1
Q ss_pred CCCcccccccccEEEEcCCCCCccccchhhHhhcccccEEEeccccchHHHhccCCcccccccccCCcccEEecCCCCc-
Q 037935 704 LPAMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISENRTDQVTAYFVFPRVTTLKLDGLPE- 782 (1085)
Q Consensus 704 ~p~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~- 782 (1085)
++.++..+|+|+.|.|++|..+. +++ + .+++|+.|.+..|..-....... ....+|+|+.|+|+...+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~-l~~---~-~~~~L~~L~L~~~~l~~~~l~~l------~~~~lp~L~~L~L~~~~~~ 232 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS-IGK---K-PRPNLKSLEIISGGLPDSVVEDI------LGSDLPNLEKLVLYVGVED 232 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB-CCS---C-BCTTCSEEEEECSBCCHHHHHHH------HHSBCTTCCEEEEECBCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce-ecc---c-cCCCCcEEEEecCCCChHHHHHH------HHccCCCCcEEEEeccccc
Confidence 33455678899999999874332 222 3 38999999998776322111000 011489999999853211
Q ss_pred ------cccccCCCcccCCCcccceeeccCCCcccccCCCCCCCCCCCCCCcccccccCCccceeeeccCCceeeecccC
Q 037935 783 ------LRCLYPGMHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLFSFKKILPNLEGLALSGKDITMILQDDF 856 (1085)
Q Consensus 783 ------l~~~~~~~~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 856 (1085)
+..+........+|+|+.|.+.+|........ .+ .-...+++|++|+|+.|.+.+.....+
T Consensus 233 ~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~------------~l-a~a~~~~~L~~LdLs~n~L~d~G~~~L 299 (362)
T 2ra8_A 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE------------MF-LESDILPQLETMDISAGVLTDEGARLL 299 (362)
T ss_dssp GTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH------------HH-HHCSSGGGCSEEECCSSCCBHHHHHHH
T ss_pred cccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH------------HH-HhCccCCCCCEEECCCCCCChHHHHHH
Confidence 11111111124589999999998865432110 00 001247999999999999877433222
Q ss_pred Cc--CccCCceEEEecCCcccccchhHHhh-ccccceEEeeccc
Q 037935 857 PQ--HLFGSLKQLRVGDDDLACFPLDLLER-FHNLEFLYLSDCS 897 (1085)
Q Consensus 857 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~~~ 897 (1085)
.. ..+++|+.|++++|.++......+.. + ...+++++++
T Consensus 300 ~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 300 LDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 21 23789999999999887654333332 2 3567777766
No 180
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=3.5e-05 Score=85.34 Aligned_cols=173 Identities=13% Similarity=0.120 Sum_probs=95.5
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhc--cCCCEEEEEEeCCCcCHHHHHHHHHHHh
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREK--KLFDRVVFSEVSQTPDIKKIQGEIAEKL 237 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l 237 (1085)
-..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+.+..... ..+ .++.++.+.......+.. ....+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ 113 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVRE-KVKNF 113 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTT-HHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHH-HHHHH
Confidence 35689999999999999886655558999999999999999999875421 112 133344444333333222 11111
Q ss_pred C-CCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCCCc---------------------EEE
Q 037935 238 G-LELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHEGY---------------------NFL 293 (1085)
Q Consensus 238 ~-~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs---------------------~il 293 (1085)
. ......... .......+++-+|++|+++... ..+.+...+....... .+-
T Consensus 114 ~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 114 ARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp HHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred hhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 1 000000000 0000001344577777765431 1122211111111122 223
Q ss_pred ecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHH
Q 037935 294 IGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTV 340 (1085)
Q Consensus 294 v~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 340 (1085)
+.+++.++..+.+...+.... ..--++....|++.++|.|..+..+
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~-~~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQEN-VKCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 389999999999988763211 1223577889999999998765443
No 181
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.72 E-value=0.00063 Score=72.97 Aligned_cols=94 Identities=11% Similarity=0.176 Sum_probs=59.6
Q ss_pred CccccchHHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 160 YEAFESRVSTLKSIQNALTD------------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
-+.++|.+..++.+.+++.. ...+.+.|+|++|+||||+|+.+++..... .+.++.+.-..
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~-----~~~i~~~~l~~-- 92 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT-----FLNISAASLTS-- 92 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE-----EEEEESTTTSS--
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEeeHHHHhh--
Confidence 35689999999998887631 234688999999999999999999876421 23344432110
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
.... ........+.......++.+|++|+++..
T Consensus 93 ------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 93 ------------KYVG-DGEKLVRALFAVARHMQPSIIFIDEVDSL 125 (297)
T ss_dssp ------------SSCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred ------------cccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHh
Confidence 1111 11222333334444467889999998654
No 182
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.69 E-value=0.00061 Score=74.91 Aligned_cols=47 Identities=23% Similarity=0.187 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHHhc------------cCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALT------------DVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+.++|.+..++.+.+.+. ....+.|.|+|++|+|||++|+.+++...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 468999999998888764 13456889999999999999999998754
No 183
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.66 E-value=0.00051 Score=72.51 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=33.7
Q ss_pred cccchHHHHHHHHH-------Hhc---cCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 162 AFESRVSTLKSIQN-------ALT---DVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~-------~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.++|++...+++.. .+. ....+.+.|+|++|+|||++|+.+++...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45666665555544 232 34567889999999999999999999754
No 184
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=4e-05 Score=79.32 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=59.5
Q ss_pred hcCCCcceEEEecCCcccCCc---hhhhccccccEEeccCcccccccchhhhhccc--cCCEEeccCCCcchhhcccCCc
Q 037935 537 FKGMKKLRVVDLTRVRLFSLP---SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFT--RLEELYMGSCSIKWEVRKGNSE 611 (1085)
Q Consensus 537 ~~~l~~Lr~L~Ls~~~i~~lp---~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~--~L~~L~L~~~~~~~~~~~~~~~ 611 (1085)
..++++|++|+|++|.|+.++ ..++.+++|++|+|++| .++.+.. +..+. +|++|+|++|.+....+..
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l~L~~L~L~~Npl~~~~~~~--- 239 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGLKLEELWLDGNSLCDTFRDQ--- 239 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTSCCSEEECTTSTTGGGCSSH---
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccCCcceEEccCCcCccccCcc---
Confidence 356788999999999887754 56678899999999998 8887733 35555 8899999998874211100
Q ss_pred cccccHHHhhcCCCCcEEE
Q 037935 612 RSNASLDELMHLQRLTTLE 630 (1085)
Q Consensus 612 ~~~~~~~~l~~L~~L~~L~ 630 (1085)
......-+..+++|+.|+
T Consensus 240 -~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 240 -STYISAIRERFPKLLRLD 257 (267)
T ss_dssp -HHHHHHHHHHCTTCCEES
T ss_pred -hhHHHHHHHHCcccCeEC
Confidence 011123466777887765
No 185
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.64 E-value=8.4e-05 Score=86.29 Aligned_cols=173 Identities=12% Similarity=0.051 Sum_probs=96.3
Q ss_pred CCccccchHHHHHHHHHHhcc-----------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeC
Q 037935 159 GYEAFESRVSTLKSIQNALTD-----------------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVS 221 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~ 221 (1085)
.-..++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++... + .++.++++
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~s 111 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNAS 111 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECTT
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeCC
Confidence 345689999999999999863 1347899999999999999999999873 2 24445555
Q ss_pred CCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHH-HHcCCcEEEEEeCCCCccc-----cccccccc------------
Q 037935 222 QTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYER-LKNENKILVILDNIWKYLD-----LDTIGIPF------------ 283 (1085)
Q Consensus 222 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-l~~~~~~LlvlDdv~~~~~-----~~~~~~~~------------ 283 (1085)
....... ....+........-... .....+. ...+++.+||+|+++.... +..+...+
T Consensus 112 ~~~~~~~-~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~ 187 (516)
T 1sxj_A 112 DVRSKTL-LNAGVKNALDNMSVVGY---FKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICN 187 (516)
T ss_dssp SCCCHHH-HHHTGGGGTTBCCSTTT---TTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEES
T ss_pred CcchHHH-HHHHHHHHhccccHHHH---HhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEc
Confidence 5444332 22222221110000000 0000000 0136778888998865421 11110000
Q ss_pred -------CC-CCCCcEEEecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCC-chHHHHHHH
Q 037935 284 -------GN-DHEGYNFLIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGG-LPIALTTVA 341 (1085)
Q Consensus 284 -------~~-~~~gs~ilv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~ 341 (1085)
+. ...+..|-+.+++.++..+.+...+.... ..--.+....|++.++| ++-++..+.
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~-~~i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREK-FKLDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHT-CCCCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 00 11223344588999999988877663111 01113457889999999 455555543
No 186
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.64 E-value=0.0022 Score=71.52 Aligned_cols=79 Identities=10% Similarity=0.174 Sum_probs=48.4
Q ss_pred CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCc-hhhhccccccEEeccCcccccccchhhhhcccc
Q 037935 512 ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLP-SSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTR 590 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~ 590 (1085)
...+|+++.+... ...|++..|.++.+|+.++|..+ ++.++ .+|.++ .|..+.+.. .++.++...|... +
T Consensus 44 ~~~~i~~v~ip~~----vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 44 DRDRISEVRVNSG----ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGT-D 114 (379)
T ss_dssp GGGGCSEEEECTT----EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTC-C
T ss_pred cccCCEEEEeCCC----ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceeccC-C
Confidence 4456777766533 56677777888888888877543 55554 345554 466666554 4666666665443 6
Q ss_pred CCEEeccCC
Q 037935 591 LEELYMGSC 599 (1085)
Q Consensus 591 L~~L~L~~~ 599 (1085)
|+.+.+..+
T Consensus 115 L~~i~lp~~ 123 (379)
T 4h09_A 115 LDDFEFPGA 123 (379)
T ss_dssp CSEEECCTT
T ss_pred cccccCCCc
Confidence 666666543
No 187
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.63 E-value=4.1e-05 Score=79.49 Aligned_cols=173 Identities=13% Similarity=0.095 Sum_probs=86.5
Q ss_pred ccccch---HHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHh
Q 037935 161 EAFESR---VSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKL 237 (1085)
Q Consensus 161 ~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 237 (1085)
+.|+|+ +..++.+..+...+..+.+.|+|++|+||||+|+.+++..... ...+.|++++.-... ..+++..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~ 102 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI---STALLEGL 102 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS---CGGGGTTG
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH---HHHHHHhc
Confidence 456653 3556666666555466889999999999999999999987654 334677776542210 00111111
Q ss_pred CCCC----CC-----chH--HHHHHHHHHHHHc-CCcEEEEEeCCCCcccccccccccCC-CCCCcEEEecCCCHHHHHH
Q 037935 238 GLEL----SD-----EAE--YRRASRLYERLKN-ENKILVILDNIWKYLDLDTIGIPFGN-DHEGYNFLIGNLSEEEAWR 304 (1085)
Q Consensus 238 ~~~~----~~-----~~~--~~~~~~~~~~l~~-~~~~LlvlDdv~~~~~~~~~~~~~~~-~~~gs~ilv~~l~~~~~~~ 304 (1085)
.... ++ ... ...+..+.+.... ++..+++.-+-. ...|......+.. ...|..+-+.+++.++..+
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~-~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~ 181 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS-PMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLA 181 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC-TTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC-HHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHH
Confidence 1000 00 000 1112222222221 222122222211 1111111000000 0123455568888888888
Q ss_pred HHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHH
Q 037935 305 LFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTV 340 (1085)
Q Consensus 305 lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 340 (1085)
++...+... ...--.+....+++.++|.+-.+..+
T Consensus 182 ~l~~~~~~~-~~~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 182 ALQRRAAMR-GLQLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHHT-TCCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHccCCHHHHHHH
Confidence 888776311 11223567788888888887665543
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.60 E-value=0.00085 Score=72.69 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=92.1
Q ss_pred CCccccchHHHHHHHHHHhc------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCH
Q 037935 159 GYEAFESRVSTLKSIQNALT------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDI 226 (1085)
Q Consensus 159 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 226 (1085)
.-+.++|.+..++.+.+++. ....+-+.++|++|+|||++|+++++..... .+.++.+
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~----- 85 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS----- 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH-----
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH-----
Confidence 34568999999999988773 1123578999999999999999999986532 2233321
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------ccccccccC---CCCCCc
Q 037935 227 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYLD-------------LDTIGIPFG---NDHEGY 290 (1085)
Q Consensus 227 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~-------------~~~~~~~~~---~~~~gs 290 (1085)
.+ .. ... ......+..+.+.....++.+|++|+++.... ...+...+. ....+.
T Consensus 86 -~l----~~----~~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 -DL----VS----KWM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp -HH----HT----TTG-GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred -HH----hh----ccc-chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 11 000 11223344455555557788999999975411 111111111 111222
Q ss_pred EEEe----------------------cCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCc-hHHHHHHH
Q 037935 291 NFLI----------------------GNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGL-PIALTTVA 341 (1085)
Q Consensus 291 ~ilv----------------------~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 341 (1085)
.||. .+.+.++-.++++.++.... ...-......|++.+.|. +-.|..+.
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-CVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC-CCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2221 66677777888887774321 111245567888888774 44444333
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.60 E-value=0.0016 Score=70.31 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=58.9
Q ss_pred CccccchHHHHHHHHHHhc------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 160 YEAFESRVSTLKSIQNALT------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
-+.++|.+..++.+.+.+. ....+.|.++|++|+|||++|+++++..... ..+.++.+.-.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~--- 83 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLV--- 83 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHH---
Confidence 3567898888888877653 1123678999999999999999999976211 12333433211
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
....... ......+.+.....++.+|++|+++..
T Consensus 84 -----------~~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 84 -----------SKWLGES-EKLVKNLFQLARENKPSIIFIDEIDSL 117 (322)
T ss_dssp -----------CSSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGG
T ss_pred -----------hhhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHh
Confidence 1111111 222344444444577889999998754
No 190
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.54 E-value=6.1e-05 Score=74.18 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=74.6
Q ss_pred CCCCcceeeeccC-CCcc--ccccChhhhcCCCcceEEEecCCcccC-----CchhhhccccccEEeccCcccccc----
Q 037935 512 ECPQLEFLHIDPK-ITFA--ELNIPDNFFKGMKKLRVVDLTRVRLFS-----LPSSIGQLTKLRMLDLTDCLQLKF---- 579 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~-~~~~--~~~l~~~~~~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~L~~L~Ls~~~~l~~---- 579 (1085)
..+.|++|++.+| .... ...+ ...+...+.|++|+|++|.|.. +...+...++|++|+|++| .+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~ 111 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL 111 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHH
Confidence 4678888888877 4100 0111 2345667888888888888764 4456667788888888888 7765
Q ss_pred -cchhhhhccccCCEEec--cCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEeccCC
Q 037935 580 -IVPNILSSFTRLEELYM--GSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVEDDS 637 (1085)
Q Consensus 580 -lp~~~~~~L~~L~~L~L--~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 637 (1085)
+... +...++|++|+| ++|.+.... .......+...++|++|++++|.+.
T Consensus 112 ~l~~~-L~~n~~L~~L~L~~~~N~i~~~g-------~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEA-LQSNTSLIELRIDNQSQPLGNNV-------EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHG-GGGCSSCCEEECCCCSSCCCHHH-------HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHH-HHhCCCceEEEecCCCCCCCHHH-------HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2222 466778888888 778773110 0113344566678888888877653
No 191
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.54 E-value=0.00045 Score=75.71 Aligned_cols=153 Identities=13% Similarity=0.167 Sum_probs=89.3
Q ss_pred CccccchHHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHH
Q 037935 160 YEAFESRVSTLKSIQNALTD-----VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
-+.++|++..++++..++.. .....|.|+|++|+|||++|+.+++..... .+.++.+.......+. ..+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~~~-~~~ 101 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGDLA-AIL 101 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHHHH-HHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhHHH-HHH
Confidence 35689999999998888762 344678999999999999999998875422 2334433222222211 111
Q ss_pred HHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccc---------------------------------
Q 037935 235 EKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTI--------------------------------- 279 (1085)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~--------------------------------- 279 (1085)
.. ..+..+|++|+++... ....+
T Consensus 102 ~~----------------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 102 TN----------------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp HT----------------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred Hh----------------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 11 1344556666655431 00000
Q ss_pred --------ccccCCCCCCcEEEecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHHHHH
Q 037935 280 --------GIPFGNDHEGYNFLIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTTVAR 342 (1085)
Q Consensus 280 --------~~~~~~~~~gs~ilv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 342 (1085)
..++.. .-+..|-+.+++.++..+++...+.... ..--.+....+++.+.|.|-.+..+..
T Consensus 160 atn~~~~l~~~L~~-R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 160 ATTRAGMLSNPLRD-RFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EESCGGGSCHHHHT-TCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred eCCCccccCHHHHh-hcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 000100 1123444589999999999987763211 112256778899999999865554433
No 192
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.0012 Score=71.97 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=60.7
Q ss_pred CccccchHHHHHHHHHHhc-------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCH
Q 037935 160 YEAFESRVSTLKSIQNALT-------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDI 226 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 226 (1085)
-+++.|-+..+++|.+.+. -...+-|-++|++|+|||.+|+++++..... .+.|+.+.-
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l--- 218 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAEL--- 218 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGG---
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHh---
Confidence 3557888888888877654 1234678899999999999999999988743 233444321
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 227 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 227 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
...... .....+..++...+...+++|++|+++..
T Consensus 219 -----------~sk~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai 253 (405)
T 4b4t_J 219 -----------VQKYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSI 253 (405)
T ss_dssp -----------SCSSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCC
T ss_pred -----------hccccc-hHHHHHHHHHHHHHHhCCceEeeecchhh
Confidence 111111 12223445555555577888888888753
No 193
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.53 E-value=0.0003 Score=77.80 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHHh-ccCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 161 EAFESRVSTLKSIQNAL-TDVNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
+.++|++...+.+..++ ..+....+.|+|+.|+||||+|+.+....
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 55889999999999988 65555559999999999999999998854
No 194
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.53 E-value=0.00032 Score=75.86 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHhc---------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 162 AFESRVSTLKSIQNALT---------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47888888887776543 2334578999999999999999999887643
No 195
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=0.00049 Score=75.38 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=40.6
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
-..++|.+..++.+..++..++.+.+.++|+.|+||||+|+.+.....
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 345789988888888888776666699999999999999999998764
No 196
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.47 E-value=0.00072 Score=75.11 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=38.1
Q ss_pred CccccchHHHHHHH---HHHhccCCc--eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 160 YEAFESRVSTLKSI---QNALTDVNV--SIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l---~~~l~~~~~--~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.+.|+|++..++.+ .+.+..+.. +.+.|+|++|+|||++|+.+.+....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35689999887664 444444333 58999999999999999999998763
No 197
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.47 E-value=0.0014 Score=71.29 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHhhcc--------------------CCCEEEEEEeC---C
Q 037935 167 VSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAREKK--------------------LFDRVVFSEVS---Q 222 (1085)
Q Consensus 167 ~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~~---~ 222 (1085)
+...+.+...+..++. ..+.++|+.|+|||++|+.+.+...... |+|. .++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccCC
Confidence 4556677777766554 4689999999999999999998765321 2332 333332 2
Q ss_pred CcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--cccccccccCCCCCCc----------
Q 037935 223 TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYL--DLDTIGIPFGNDHEGY---------- 290 (1085)
Q Consensus 223 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~--~~~~~~~~~~~~~~gs---------- 290 (1085)
...+.++ +++.+.+..... .+++-++|+|+++... ..+.+...+.....+.
T Consensus 87 ~~~i~~i-r~l~~~~~~~~~----------------~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 87 TLGVDAV-REVTEKLNEHAR----------------LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SBCHHHH-HHHHHHTTSCCT----------------TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCCHHHH-HHHHHHHhhccc----------------cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 2233322 333333322110 1456677777776542 1222222221111122
Q ss_pred -----------EEEecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHHH
Q 037935 291 -----------NFLIGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALTT 339 (1085)
Q Consensus 291 -----------~ilv~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 339 (1085)
++-+.++++++..+.+..... -..+.+..+++.++|.|..+..
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~------~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREVT------MSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC------CCHHHHHHHHHHTTTCHHHHHH
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHH
Confidence 222389999999999988761 1245668899999999976644
No 198
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.46 E-value=0.0017 Score=72.41 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=39.3
Q ss_pred CccccchHHHHHHHHHHhc------------cCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 160 YEAFESRVSTLKSIQNALT------------DVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
-+.++|++..++.+.+++. ....+-|.|+|.+|+|||++|+.+++...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 4568999999999988773 12346889999999999999999988754
No 199
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.002 Score=71.18 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=60.9
Q ss_pred ccccchHHHHHHHHHHhc-------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 161 EAFESRVSTLKSIQNALT-------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
+++.|-+..+++|.+.+. -...+-|-++|++|+|||++|+++++..... .+.|..+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~----- 278 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSE----- 278 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG-----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHH-----
Confidence 457888888888877543 1345788899999999999999999988743 33344332
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
+....... ....+..++...+...+++|++|+++..
T Consensus 279 ---------L~sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai 314 (467)
T 4b4t_H 279 ---------LVQKYVGE-GARMVRELFEMARTKKACIIFFDEIDAV 314 (467)
T ss_dssp ---------GCCCSSSH-HHHHHHHHHHHHHHTCSEEEEEECCTTT
T ss_pred ---------hhcccCCH-HHHHHHHHHHHHHhcCCceEeecccccc
Confidence 11111111 1223444555555678899999988753
No 200
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.39 E-value=0.006 Score=67.91 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=65.8
Q ss_pred cccceEEEeeccCccccccc--CCCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCch-hhhcccccc
Q 037935 491 LKKCYAISLLNSSIHEVSLE--FECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPS-SIGQLTKLR 567 (1085)
Q Consensus 491 ~~~~r~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~ 567 (1085)
..+++.+.+.. .++.++.. ..|.+|+.+.+..+ ...+...+|.++ .|..+.+..+ ++.++. ++.. .+|+
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~----v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST----VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT----CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc----ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 34677777753 56777654 38999999999644 678888899987 5777776543 555553 4444 4899
Q ss_pred EEeccCcccccccchhhhhccccCCEEeccC
Q 037935 568 MLDLTDCLQLKFIVPNILSSFTRLEELYMGS 598 (1085)
Q Consensus 568 ~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~ 598 (1085)
.+.+..+ ++.+....|.+. +|....+..
T Consensus 117 ~i~lp~~--~~~i~~~~F~~~-~l~~~~~~~ 144 (379)
T 4h09_A 117 DFEFPGA--TTEIGNYIFYNS-SVKRIVIPK 144 (379)
T ss_dssp EEECCTT--CCEECTTTTTTC-CCCEEEECT
T ss_pred cccCCCc--cccccccccccc-eeeeeeccc
Confidence 9999874 666776666554 455555443
No 201
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.35 E-value=0.00098 Score=72.45 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=39.9
Q ss_pred CccccchHHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 160 YEAFESRVSTLKSIQNALTDVNV-SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
-+.++|++..++.+.+++..+.. .++.+.|++|+|||++|+.+.+...
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 45689999999999999886554 5667778899999999999988764
No 202
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.34 E-value=0.0024 Score=69.93 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=88.3
Q ss_pred CccccchHHHHHHHHHHhc------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 160 YEAFESRVSTLKSIQNALT------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
-+.++|.+..++.+.+.+. ....+-|.|+|++|+|||++|+.+++..... .+.++.+
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~------ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS------ 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH------
Confidence 3568899988888887763 0123458899999999999999999987532 2223322
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------ccccccccC---CCCCCcE
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKYLD-------------LDTIGIPFG---NDHEGYN 291 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~~~-------------~~~~~~~~~---~~~~gs~ 291 (1085)
.+ .... .... ......+.......++.+|++|+++.... ...+...+. ....+..
T Consensus 119 ~l----~~~~----~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 DL----VSKW----MGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HH----HSCC-------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred HH----hhhh----cchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 11 1110 0111 12233444444456789999999875420 111111110 0011212
Q ss_pred EE----------------------ecCCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCc-hHHHHHHH
Q 037935 292 FL----------------------IGNLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGL-PIALTTVA 341 (1085)
Q Consensus 292 il----------------------v~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 341 (1085)
|| +.+.+.++-.+++..+...... ..-......|++.+.|. +-.|..+.
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS-VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB-CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 22 2666777778888777642211 11245567888888884 44444443
No 203
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.33 E-value=0.00096 Score=75.40 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=78.5
Q ss_pred HHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHH
Q 037935 170 LKSIQNALTDVN-VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYR 248 (1085)
Q Consensus 170 ~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 248 (1085)
...+.......+ ...+.|+|++|+||||||+.+++.......-..+++++.. .+..++...+....
T Consensus 117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~------- 183 (440)
T 2z4s_A 117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEGK------- 183 (440)
T ss_dssp HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHccc-------
Confidence 344444443333 6789999999999999999999977543101124555543 23334443332210
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCCccc----ccccccccCC-CCCCcEEEe----------------------------c
Q 037935 249 RASRLYERLKNENKILVILDNIWKYLD----LDTIGIPFGN-DHEGYNFLI----------------------------G 295 (1085)
Q Consensus 249 ~~~~~~~~l~~~~~~LlvlDdv~~~~~----~~~~~~~~~~-~~~gs~ilv----------------------------~ 295 (1085)
...+.... ..+.-+|++||++.... .+.+...+.. ...|..|++ +
T Consensus 184 -~~~~~~~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~ 261 (440)
T 2z4s_A 184 -LNEFREKY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE 261 (440)
T ss_dssp -HHHHHHHH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCC
T ss_pred -HHHHHHHh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeC
Confidence 11222222 12566888888765421 1111111100 012333333 6
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhCCchHHHH
Q 037935 296 NLSEEEAWRLFKIMNGDDVENCKFKPTAINVAQACGGLPIALT 338 (1085)
Q Consensus 296 ~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 338 (1085)
+++.++-.+++...+.... ..--.++...|++.++|.+-.+.
T Consensus 262 ~p~~e~r~~iL~~~~~~~~-~~i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 262 PPDEETRKSIARKMLEIEH-GELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp CCCHHHHHHHHHHHHHHHT-CCCCTTHHHHHHHHCCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHH
Confidence 6777777777766652100 01113446677778887775443
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.29 E-value=0.0049 Score=69.75 Aligned_cols=95 Identities=18% Similarity=0.289 Sum_probs=57.7
Q ss_pred CccccchHHHHHHHHHHhc------------cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 160 YEAFESRVSTLKSIQNALT------------DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
-+.++|.+..++.+.+.+. ....+.|.++|++|+|||++|+.+++.... .-++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeHHH---
Confidence 3568899998888887663 123468899999999999999999997621 1223333221
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
+... ..+.. .. .+..+.+.....++.+|++|+++..
T Consensus 204 -l~~~---~~g~~-~~-----~~~~~f~~a~~~~~~vl~iDEid~l 239 (444)
T 2zan_A 204 -LVSK---WLGES-EK-----LVKNLFQLARENKPSIIFIDEIDSL 239 (444)
T ss_dssp ------------C-CC-----THHHHHHHHHHSCSEEEEESCTTTT
T ss_pred -HHhh---hcchH-HH-----HHHHHHHHHHHcCCeEEEEechHhh
Confidence 1110 01111 11 1233444444578899999999854
No 205
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.27 E-value=0.00031 Score=72.71 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=59.1
Q ss_pred CCCCcceeeeccCCCccccccChhhhcCCCcceEEEecCCcccCCchhhhccc--cccEEeccCccccc-ccc------h
Q 037935 512 ECPQLEFLHIDPKITFAELNIPDNFFKGMKKLRVVDLTRVRLFSLPSSIGQLT--KLRMLDLTDCLQLK-FIV------P 582 (1085)
Q Consensus 512 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~--~L~~L~Ls~~~~l~-~lp------~ 582 (1085)
.+++|++|++++|.......++ ..+..+++|++|+|++|.|+.+. .+..+. +|++|+|++| .+. .+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~N-pl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGN-SLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTS-TTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCC-cCccccCcchhHHH
Confidence 3577888888888731122333 35678999999999999998873 466666 9999999999 554 344 2
Q ss_pred hhhhccccCCEEe
Q 037935 583 NILSSFTRLEELY 595 (1085)
Q Consensus 583 ~~~~~L~~L~~L~ 595 (1085)
.++..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3468899999986
No 206
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.003 Score=68.98 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=58.4
Q ss_pred ccccchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 161 EAFESRVSTLKSIQNALT----D---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
+++.|-+..+++|.+.+. . ...+-|-++|++|+|||.+|+++++..... | +.++.+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s~----- 251 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGSE----- 251 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESGG-----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHHH-----
Confidence 457788888888776553 1 234789999999999999999999988743 2 3333322
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
+...... .....+..++.......+++|++|+++.
T Consensus 252 ---------l~sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 252 ---------LIQKYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDA 286 (437)
T ss_dssp ---------GCCSSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESS
T ss_pred ---------hhhccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhh
Confidence 1111111 1122344444444456788888888764
No 207
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.23 E-value=0.00046 Score=67.60 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCC
Q 037935 166 RVSTLKSIQNALTD---VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS 242 (1085)
Q Consensus 166 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 242 (1085)
+...++.+.+++.+ .....+.|+|+.|+||||||+.++........+. +++++ ..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH
Confidence 44455555555542 2347899999999999999999999875332232 23333 34445444443322111
Q ss_pred CchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 243 DEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
. ...+.+ .+.-+||+||++.
T Consensus 92 ~--------~~~~~~--~~~~llilDE~~~ 111 (180)
T 3ec2_A 92 T--------KFLKTV--LNSPVLVLDDLGS 111 (180)
T ss_dssp S--------HHHHHH--HTCSEEEEETCSS
T ss_pred H--------HHHHHh--cCCCEEEEeCCCC
Confidence 1 223333 3556899999974
No 208
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.21 E-value=0.00017 Score=70.91 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=81.2
Q ss_pred hhhcCCCcceEEEecCC-cccC-----CchhhhccccccEEeccCcccccccch----hhhhccccCCEEeccCCCcchh
Q 037935 535 NFFKGMKKLRVVDLTRV-RLFS-----LPSSIGQLTKLRMLDLTDCLQLKFIVP----NILSSFTRLEELYMGSCSIKWE 604 (1085)
Q Consensus 535 ~~~~~l~~Lr~L~Ls~~-~i~~-----lp~~i~~L~~L~~L~Ls~~~~l~~lp~----~~~~~L~~L~~L~L~~~~~~~~ 604 (1085)
..+...+.|++|+|++| .+.. +...+...++|++|+|++| .+..-.. ..+...++|++|+|++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 45778899999999999 8864 4566778899999999999 7764221 2246668999999999998321
Q ss_pred hcccCCccccccHHHhhcCCCCcEEEE--EeccCCCCC-----Ccc-cccccceeeEEec
Q 037935 605 VRKGNSERSNASLDELMHLQRLTTLEI--DVEDDSILP-----DGL-FTKKLERFDISIG 656 (1085)
Q Consensus 605 ~~~~~~~~~~~~~~~l~~L~~L~~L~l--~~~~~~~~~-----~~~-~l~~L~~L~l~~~ 656 (1085)
. .......+...++|++|++ ++|.+..-. ..+ ..++|+.|+++.+
T Consensus 109 g-------~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 109 G-------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp H-------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred H-------HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 1 1123455777889999999 778775422 111 3467888887543
No 209
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.19 E-value=0.00091 Score=66.91 Aligned_cols=89 Identities=15% Similarity=0.212 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhccC----CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCC
Q 037935 167 VSTLKSIQNALTDV----NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS 242 (1085)
Q Consensus 167 ~~~~~~l~~~l~~~----~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 242 (1085)
...++.+.+++... ..+.+.|+|.+|+|||+||+.+++....+ ...++|++++ .+...+...+...
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~-- 104 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQDQ-- 104 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC---C--
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhccc--
Confidence 33455555555432 12688999999999999999999987643 3346666653 3444443322211
Q ss_pred CchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 243 DEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
. .....+.+.+ . -+||+||++..
T Consensus 105 ~------~~~~~~~~~~-~-~~lilDei~~~ 127 (202)
T 2w58_A 105 T------MNEKLDYIKK-V-PVLMLDDLGAE 127 (202)
T ss_dssp C------CHHHHHHHHH-S-SEEEEEEECCC
T ss_pred h------HHHHHHHhcC-C-CEEEEcCCCCC
Confidence 1 1122333332 2 39999999653
No 210
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.14 E-value=0.0013 Score=75.07 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=41.6
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
-+.++||+.+++.+...+......-+.++|.+|+|||++|+.+++...
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999998765556678999999999999999999864
No 211
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0032 Score=69.77 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=62.2
Q ss_pred CccccchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCH
Q 037935 160 YEAFESRVSTLKSIQNALT----D---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDI 226 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 226 (1085)
-+++.|-+..+++|.+.+. . ...+-|-++|++|+|||++|+++++..... .+.|+.+.-
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l--- 251 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGI--- 251 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGT---
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhh---
Confidence 3457788888888776654 1 234788999999999999999999988743 233444321
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 227 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 227 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
...... .....+..++.......+++|++|+++..
T Consensus 252 -----------~sk~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai 286 (437)
T 4b4t_L 252 -----------VDKYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAI 286 (437)
T ss_dssp -----------CCSSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSS
T ss_pred -----------ccccch-HHHHHHHHHHHHHHhcCCceeeeeccccc
Confidence 111111 12233445555555688999999998753
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0034 Score=69.49 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=62.0
Q ss_pred CccccchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCH
Q 037935 160 YEAFESRVSTLKSIQNALT----D---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDI 226 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 226 (1085)
-+++.|-+..+++|.+.+. . ...+-|.++|++|+|||++|+++++..... .+.|+.+.-.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~-- 243 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFV-- 243 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTC--
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhh--
Confidence 3567889988888877654 1 234678999999999999999999988643 3344443211
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 227 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 227 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
..... .....+..++...+...++++++|+++.
T Consensus 244 ------------~~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 244 ------------HKYLG-EGPRMVRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp ------------CSSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred ------------ccccc-hhHHHHHHHHHHHHHcCCCeeechhhhh
Confidence 11111 1223345555555568899999999853
No 213
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.01 E-value=0.0014 Score=81.15 Aligned_cols=101 Identities=14% Similarity=0.233 Sum_probs=61.3
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhccC-----CCEEEEEEeCCCcCHHHHHHHHH
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKKL-----FDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
-+.++||+.+++++++.+.......+.++|.+|+|||++|+.+++....... -..+++++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 4568999999999999987655567889999999999999999998643110 11244444322110
Q ss_pred HHhCCCCCCchHHHHHHHHHHHHHc-CCcEEEEEeCCCCc
Q 037935 235 EKLGLELSDEAEYRRASRLYERLKN-ENKILVILDNIWKY 273 (1085)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDdv~~~ 273 (1085)
+.... ......+..+.+.+.. +++.+|++|++...
T Consensus 240 ---g~~~~-g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l 275 (854)
T 1qvr_A 240 ---GAKYR-GEFEERLKAVIQEVVQSQGEVILFIDELHTV 275 (854)
T ss_dssp ----------CHHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred ---cCccc-hHHHHHHHHHHHHHHhcCCCeEEEEecHHHH
Confidence 00000 1112234445555543 46889999998754
No 214
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0028 Score=70.14 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=61.2
Q ss_pred CccccchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCH
Q 037935 160 YEAFESRVSTLKSIQNALT----D---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDI 226 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 226 (1085)
-+.+.|-+..+++|.+.+. . ...+-|-++|++|+|||.+|+++++..... .+.++.+.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~---- 250 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQ---- 250 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG----
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhh----
Confidence 3567889998888877643 1 235788999999999999999999988643 33344332
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 227 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 227 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
+....... ....+..++.......+++|++|+++.
T Consensus 251 ----------l~~~~vGe-se~~ir~lF~~A~~~aP~IifiDEiDa 285 (434)
T 4b4t_M 251 ----------LVQMYIGE-GAKLVRDAFALAKEKAPTIIFIDELDA 285 (434)
T ss_dssp ----------GCSSCSSH-HHHHHHHHHHHHHHHCSEEEEEECTHH
T ss_pred ----------hhhcccch-HHHHHHHHHHHHHhcCCeEEeecchhh
Confidence 11111111 223344455555557899999999863
No 215
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.95 E-value=0.0026 Score=67.97 Aligned_cols=93 Identities=14% Similarity=0.245 Sum_probs=58.8
Q ss_pred CccccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCH
Q 037935 160 YEAFESRVSTLKSIQNALTD-------------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDI 226 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 226 (1085)
-+.++|.+..++++.+++.. ...+.+.|+|++|+|||++|+.+++..... . +.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-----~--i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----F--ISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-----E--EEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-----E--EEEE----h
Confidence 34588998888887776541 344678999999999999999999876421 2 2332 1
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 227 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 227 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
..+.... ++.. . ..+..+.+......+.+|++|+++.
T Consensus 83 ~~l~~~~---~g~~-~-----~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 83 PELLTMW---FGES-E-----ANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp HHHHHHH---HTTC-T-----THHHHHHHHHHHTCSEEEEECSTTH
T ss_pred HHHHhhh---cCch-H-----HHHHHHHHHHHhcCCeEEEEEChHH
Confidence 2222221 2211 1 1133444444456789999999974
No 216
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.94 E-value=0.00041 Score=65.07 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 162 AFESRVSTLKSIQNALT--DVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.++|++..++++.+.+. ...-.-|.|+|.+|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 47888888888888765 22334567999999999999999988643
No 217
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.84 E-value=0.0052 Score=66.63 Aligned_cols=49 Identities=29% Similarity=0.516 Sum_probs=32.9
Q ss_pred HHHHHHHhccC--CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 170 LKSIQNALTDV--NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 170 ~~~l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
...+..++... ....+.|+|++|+||||+|+.+++..... .+ .++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~ 73 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA 73 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH
Confidence 34444444432 34678999999999999999999977543 12 2455554
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.79 E-value=0.0043 Score=76.01 Aligned_cols=101 Identities=16% Similarity=0.263 Sum_probs=64.3
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhcc----CCCEEEE-EEeCCCcCHHHHHHHHH
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREKK----LFDRVVF-SEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~w-v~~~~~~~~~~~~~~i~ 234 (1085)
-+.++||+.+++++.+.+......-+.|+|.+|+|||++|+.+++...... .....+| ++++.- .
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------~ 254 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------L 254 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------h
Confidence 356899999999999999866666788999999999999999998764321 1122222 221110 0
Q ss_pred HHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 235 EKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
.+... .......+..+.+.+...++.+|++||++..
T Consensus 255 --~~~~~-~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l 290 (758)
T 1r6b_X 255 --AGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTI 290 (758)
T ss_dssp --CCCCC-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTT
T ss_pred --ccccc-cchHHHHHHHHHHHHHhcCCeEEEEechHHH
Confidence 01111 1122233455555665556799999999754
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.58 E-value=0.0049 Score=75.35 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=41.8
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+.++||+.+++++...+......-+.++|.+|+|||++|+.+++...
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999765556688999999999999999999863
No 220
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.54 E-value=0.007 Score=63.02 Aligned_cols=93 Identities=17% Similarity=0.211 Sum_probs=55.0
Q ss_pred CccccchHHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 160 YEAFESRVSTLKSIQNALT---D---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
-+.++|.+..++++.+.+. . ...+-+.|+|++|+||||+|+.+++..... | +.++.+.-.+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSDFVE-- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--E---EEECSCSSTT--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC--E---EEEeHHHHHH--
Confidence 3568898887776655432 1 123458899999999999999999876422 2 3333222100
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
...... ......+.+......+.++++|+++.
T Consensus 84 ------------~~~~~~-~~~~~~~~~~a~~~~~~il~iDeid~ 115 (257)
T 1lv7_A 84 ------------MFVGVG-ASRVRDMFEQAKKAAPCIIFIDEIDA 115 (257)
T ss_dssp ------------SCCCCC-HHHHHHHHHHHHTTCSEEEEETTHHH
T ss_pred ------------Hhhhhh-HHHHHHHHHHHHHcCCeeehhhhhhh
Confidence 000111 12233444554456778999999843
No 221
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.44 E-value=0.0094 Score=63.30 Aligned_cols=70 Identities=14% Similarity=0.055 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh-hc-cCCCEEEEEEeCC-CcCHHHHHHHHHHHhC
Q 037935 167 VSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR-EK-KLFDRVVFSEVSQ-TPDIKKIQGEIAEKLG 238 (1085)
Q Consensus 167 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~ 238 (1085)
+..++.+...+..++...+.++|+.|+||||+|+.+.+... .. .+.+. .+++.+. ...+.++ +++.+.+.
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~ 75 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLN 75 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHh
Confidence 44556677777666678899999999999999999988632 11 23343 4555443 3444443 34555443
No 222
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.42 E-value=0.018 Score=60.31 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=53.4
Q ss_pred ccccchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 161 EAFESRVSTLKSIQNALT----D---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
+++.|-+..++.+.+.+. . .-.+-+.++|++|+||||||+.++..... ..+++..+.-.+
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~-- 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN-- 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS--
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh--
Confidence 456787777777766442 0 11123999999999999999999987543 234444322110
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
.. .......+..+.+......++++++|+++.
T Consensus 83 ------------~~-~~~~~~~i~~vf~~a~~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 83 ------------MY-VGESERAVRQVFQRAKNSAPCVIFFDEVDA 114 (274)
T ss_dssp ------------ST-THHHHHHHHHHHHHHHHTCSEEEEEETCTT
T ss_pred ------------hh-hhHHHHHHHHHHHHHHhcCCCeEeeehhhh
Confidence 00 001112233444444346789999999864
No 223
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.42 E-value=0.0008 Score=62.81 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=32.8
Q ss_pred cccchHHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 162 AFESRVSTLKSIQNALTD--VNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.++|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 468888888888777651 233457799999999999999997753
No 224
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.30 E-value=0.016 Score=65.25 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=56.1
Q ss_pred ccccchHHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHH
Q 037935 161 EAFESRVSTLKSIQNALT---D---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKK 228 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 228 (1085)
+.++|.+..++++.+... . .-.+-|.|+|++|+|||++|+.++...... | +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~--f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP--F---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC--E---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC--e---eeCCHHHHHHH--
Confidence 457888887766655432 1 112457899999999999999999976532 2 33443321110
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 229 IQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 229 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
... ........++.......+.+|++|+++.
T Consensus 89 ------------~~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 89 ------------FVG-VGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp ------------CTT-HHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred ------------Hhc-ccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 001 1122233444545457899999999965
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.26 E-value=0.0048 Score=66.51 Aligned_cols=105 Identities=14% Similarity=0.215 Sum_probs=60.2
Q ss_pred cccchHHHHHHHHHHhccC---------CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHH
Q 037935 162 AFESRVSTLKSIQNALTDV---------NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGE 232 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 232 (1085)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++++.-..... ..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~~- 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-VS- 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-HH-
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-HH-
Confidence 4678888888887776521 23689999999999999999999976432 11245556554322111 11
Q ss_pred HHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 233 IAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 233 i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
..++........ .....+...+.....-++++|+++..
T Consensus 94 --~l~g~~~~~~~~-~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 94 --RLIGAPPGYVGY-EEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp --HHHCCCTTSTTT-TTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred --HhcCCCCccccc-cccchHHHHHHhCCCeEEEEeChhhc
Confidence 112221110000 00012223333355679999999764
No 226
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.25 E-value=0.0038 Score=56.81 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=46.5
Q ss_pred eEEEecCCccc--CCchhhhccccccEEeccCcccccccchhhhhccccCCEEeccCCCc
Q 037935 544 RVVDLTRVRLF--SLPSSIGQLTKLRMLDLTDCLQLKFIVPNILSSFTRLEELYMGSCSI 601 (1085)
Q Consensus 544 r~L~Ls~~~i~--~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~~~~L~~L~~L~L~~~~~ 601 (1085)
.+++.++++++ .+|..+. .+|++|+|++| .|+.+|.+.|..+.+|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 36788888888 8886432 46899999999 99999999889999999999999987
No 227
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.12 E-value=0.011 Score=61.83 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=42.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe--CCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcC
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV--SQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 260 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 260 (1085)
+++.|+|++|+|||+||.++...... .++|+++ ....+. - . ......+..+.+.+. .
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~-----~VlyIs~~~eE~v~~-------------~-~-~~le~~l~~i~~~l~-~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSG-------------Y-N-TDFNVFVDDIARAML-Q 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTT-------------C-B-CCHHHHHHHHHHHHH-H
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCC-----CEEEEEecchhhhhh-------------h-h-cCHHHHHHHHHHHHh-h
Confidence 57789999999999999999886221 2456666 222110 0 0 112223444555554 3
Q ss_pred CcEEEEEeCCCCc
Q 037935 261 NKILVILDNIWKY 273 (1085)
Q Consensus 261 ~~~LlvlDdv~~~ 273 (1085)
.+ +||+|++...
T Consensus 183 ~~-LLVIDsI~aL 194 (331)
T 2vhj_A 183 HR-VIVIDSLKNV 194 (331)
T ss_dssp CS-EEEEECCTTT
T ss_pred CC-EEEEeccccc
Confidence 34 9999998643
No 228
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.08 E-value=0.012 Score=67.07 Aligned_cols=91 Identities=18% Similarity=0.243 Sum_probs=58.1
Q ss_pred ccccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 161 EAFESRVSTLKSIQNALTD-------------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
+.++|.+..++++.+++.. ...+-|.|+|.+|+|||++|+.+++.... ..+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEch------
Confidence 4589999999988877641 33457889999999999999999887532 12334321
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCC
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIW 271 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~ 271 (1085)
++... ... ........+++....+++.+|+||+++
T Consensus 273 ----~l~~~----~~g-~~~~~~~~~f~~A~~~~p~iLfLDEId 307 (489)
T 3hu3_A 273 ----EIMSK----LAG-ESESNLRKAFEEAEKNAPAIIFIDELD 307 (489)
T ss_dssp ----HHHTS----CTT-HHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred ----Hhhhh----hcc-hhHHHHHHHHHHHHhcCCcEEEecchh
Confidence 11111 111 112223344444445788999999984
No 229
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.07 E-value=0.028 Score=57.84 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhcc----CCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCC----------CchHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKK----LFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS----------DEAEY 247 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~ 247 (1085)
-.++.|+|.+|+|||||++.+........ .-..++|++....+....+. ++++.++.... ..+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36999999999999999999987532211 12568899887765555443 34455554320 11111
Q ss_pred ---HHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 248 ---RRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 248 ---~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
.....+.+.+...+.-+||+|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1122334444446788999998754
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.01 E-value=0.0057 Score=64.96 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
..+.+.++|++|+|||++|+.+++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467889999999999999999998853
No 231
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.97 E-value=0.03 Score=56.47 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQG 231 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 231 (1085)
-.++.|+|.+|+||||++..+.. .. -..++|++....++...+.+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHHH
Confidence 46999999999999999999988 21 24688888877566655543
No 232
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.94 E-value=0.012 Score=66.90 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHHhc---cC--CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 161 EAFESRVSTLKSIQNALT---DV--NVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~---~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
+.++|.+..++.+..++. .+ ..+-+.++|++|+|||++|+.+.+....
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 568999988776554433 22 2357889999999999999999998763
No 233
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.91 E-value=0.033 Score=58.10 Aligned_cols=86 Identities=9% Similarity=0.096 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCC-----chHHHHH-HHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD-----EAEYRRA-SRLYER 256 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~~~~ 256 (1085)
+++-|+|.+|+||||||.++......+..=..++||+....++.. .++.++.+.+. ....+.+ ..+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999999887766533112468999998888764 37778765432 1112222 233333
Q ss_pred H---HcCCcEEEEEeCCCCc
Q 037935 257 L---KNENKILVILDNIWKY 273 (1085)
Q Consensus 257 l---~~~~~~LlvlDdv~~~ 273 (1085)
+ .+++.-++|+|-|...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 3 4577899999998655
No 234
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.84 E-value=0.011 Score=70.81 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=58.4
Q ss_pred ccccchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 161 EAFESRVSTLKSIQNALT----D---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
+.+.|-+..+++|.+.+. . ...+-|.++|++|+|||+||+++++..... .+.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH-----
Confidence 346677766666665542 1 234678999999999999999999876532 34444321
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
+. ..... .....+..+++......+++|++|+++..
T Consensus 274 -----l~----sk~~g-ese~~lr~lF~~A~~~~PsIIfIDEiDal 309 (806)
T 3cf2_A 274 -----IM----SKLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAI 309 (806)
T ss_dssp -----HH----SSCTT-HHHHHHHHHHHHHTTSCSEEEEEESGGGT
T ss_pred -----hh----cccch-HHHHHHHHHHHHHHHcCCeEEEEehhccc
Confidence 11 11111 12233455566665688999999998643
No 235
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.73 E-value=0.012 Score=55.11 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ 222 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 222 (1085)
.-..++|+|..|+|||||++.++...... .+. +++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~-~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKN-AAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCC-EEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCc-EEEEcHHH
Confidence 45789999999999999999999977643 222 55665543
No 236
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.72 E-value=0.041 Score=59.30 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCC------CchHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS------DEAEYRRASRLYE 255 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~ 255 (1085)
-+++.|+|.+|+||||||.++.......+ ..++|++....++.. .++.++.... ..+..+....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 37999999999999999999998765432 347888887777654 4566665432 1122222222222
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 037935 256 RLKNENKILVILDNIWKY 273 (1085)
Q Consensus 256 ~l~~~~~~LlvlDdv~~~ 273 (1085)
.+...+.-++|+|.+...
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 233355668999998654
No 237
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.70 E-value=0.052 Score=58.88 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhcc----CCCEEEEEEeCCCcCHHHHHHHHHHHhCC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKK----LFDRVVFSEVSQTPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 239 (1085)
.-.++.|+|.+|+||||+|..++....... .-..++|++....++...+. +++..++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~ 182 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNV 182 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 347999999999999999999988643211 12468999998887776654 34555554
No 238
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.58 E-value=0.067 Score=62.03 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHHhc------cCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALT------DVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|-+...+.+.+.+. .....++.++|++|+||||+|+.++....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346787777776655433 22456899999999999999999999875
No 239
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.54 E-value=0.051 Score=58.53 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=42.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhc------------cCC--CEEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREK------------KLF--DRVVFSEVSQTPDIKKIQGEIAEKLGLE 240 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~------------~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 240 (1085)
-.++.|+|.+|+||||+|.+++...... +.. ..++|++....++..++.+ +++.++.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~ 169 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGID 169 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCC
Confidence 4799999999999999999988763211 111 4689999988887776664 45566543
No 240
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.52 E-value=0.019 Score=61.29 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhccC---CceEEEEEcCCCCcHHHHHHHHHHHHh-hccCCCEEEEEEe
Q 037935 166 RVSTLKSIQNALTDV---NVSIIGVYGMGGIGKTTLVKEFARQAR-EKKLFDRVVFSEV 220 (1085)
Q Consensus 166 r~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~~~f~~~~wv~~ 220 (1085)
+...++.+.+++... ....+.|+|.+|+|||+||+.+++... .+ .+ .+.++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g~-~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-GV-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-CC-CEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEH
Confidence 444555555665531 246888999999999999999999876 43 23 3455554
No 241
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.41 E-value=0.028 Score=59.12 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=33.7
Q ss_pred CccccchHHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 160 YEAFESRVSTLKSIQNALT---D---------VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
-++++|.+..++++.+... . .-.+-+.|+|+.|+||||||+.++....
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 4567888776665544322 1 0112389999999999999999998764
No 242
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.41 E-value=0.056 Score=58.14 Aligned_cols=58 Identities=22% Similarity=0.360 Sum_probs=42.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhcc---C-CCEEEEEEeCCCcCHHHHHHHHHHHhCCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKK---L-FDRVVFSEVSQTPDIKKIQGEIAEKLGLE 240 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 240 (1085)
-.++.|+|.+|+||||+|.++........ . -..++|++....++..++. ++++.++..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~ 168 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLD 168 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCC
Confidence 36999999999999999999987643211 0 2468999998887777665 345666543
No 243
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.32 E-value=0.054 Score=59.64 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhc----cCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCC----------Cc---
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREK----KLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS----------DE--- 244 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~--- 244 (1085)
-.++.|+|.+|+|||||+..++-..... ..-..++|++....+....+ +.+++.++.... ..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 3699999999999999999876443221 12346889988776666554 336666664321 00
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEeCCC
Q 037935 245 AEYRRASRLYERLKNENKILVILDNIW 271 (1085)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~LlvlDdv~ 271 (1085)
.....+..+...+...+.-+||+|.+.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchh
Confidence 111223333444444677899999864
No 244
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.16 E-value=0.069 Score=58.05 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=53.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCC-----CchHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS-----DEAEYRRASRLYER 256 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~ 256 (1085)
-+++.|+|.+|+||||||.++.......+ ..++|++....++.. .++.++.+.. .....+.+....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 36889999999999999999887765332 368999998777654 2455554321 11112222233333
Q ss_pred HH-cCCcEEEEEeCCCC
Q 037935 257 LK-NENKILVILDNIWK 272 (1085)
Q Consensus 257 l~-~~~~~LlvlDdv~~ 272 (1085)
+. ..+.-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 33 34556899999854
No 245
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.09 E-value=0.51 Score=58.18 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 162 AFESRVSTLKSIQNALTD---------VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.++|.+..++.+...+.. .....+.|+|+.|+|||++|+.+.+...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999988888777652 1235889999999999999999999764
No 246
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.07 E-value=0.067 Score=59.35 Aligned_cols=88 Identities=22% Similarity=0.368 Sum_probs=53.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc-CHHHHHHHHHHHhC--------CCCCCchHHHH----
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP-DIKKIQGEIAEKLG--------LELSDEAEYRR---- 249 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~--------~~~~~~~~~~~---- 249 (1085)
..++|+|.+|+|||||++.+......+. -+.++++-+.+.. ...++.+++...-. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 4689999999999999999988766442 2445667776654 45566665543210 01111111111
Q ss_pred -HHHHHHHHH--cCCcEEEEEeCCC
Q 037935 250 -ASRLYERLK--NENKILVILDNIW 271 (1085)
Q Consensus 250 -~~~~~~~l~--~~~~~LlvlDdv~ 271 (1085)
...+.+++. ++++.|+++||+.
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHH
Confidence 123334443 4899999999984
No 247
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.03 E-value=0.074 Score=57.54 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCC-----chHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD-----EAEYRRASRLYER 256 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~ 256 (1085)
-+++.|+|.+|+||||||.++.......+ ..++|++....++.. .++.++..... ....+....+.+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 47899999999999999999987665332 358899988777653 25556643221 1112222233333
Q ss_pred HH-cCCcEEEEEeCCCC
Q 037935 257 LK-NENKILVILDNIWK 272 (1085)
Q Consensus 257 l~-~~~~~LlvlDdv~~ 272 (1085)
+. ..+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 32 34567899998754
No 248
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.03 E-value=0.072 Score=57.70 Aligned_cols=84 Identities=21% Similarity=0.353 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCC-----chHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD-----EAEYRRASRLYER 256 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~ 256 (1085)
-+++.|+|.+|+||||||.++.......+ ..++|++....++.. .+..++..... ....+.+..+.+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 46899999999999999999888765432 358899998777644 24556543211 1112222233333
Q ss_pred H-HcCCcEEEEEeCCCC
Q 037935 257 L-KNENKILVILDNIWK 272 (1085)
Q Consensus 257 l-~~~~~~LlvlDdv~~ 272 (1085)
+ ...+.-+||+|.+..
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 3 235556899998743
No 249
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.97 E-value=0.026 Score=56.04 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 165 SRVSTLKSIQNALTD---VNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 165 gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.|+..++++.+.+.. ....+|+|+|..|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356677777777653 34579999999999999999999886643
No 250
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.93 E-value=0.02 Score=61.43 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=37.9
Q ss_pred ccccchHHHHHHHHHHhcc--------------CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTD--------------VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|++..++.+...+.. .....+.++|.+|+|||++|+.+.+...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999988888876642 2345688999999999999999998774
No 251
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.89 E-value=0.039 Score=59.04 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=53.8
Q ss_pred HHHHHhc-cCCceEEEEEcCCCCcHHHHHHHHHHHHhhc-cCCCEEEEEEeCCCc-CHHHHHHHHHHHhC-CCCCCchHH
Q 037935 172 SIQNALT-DVNVSIIGVYGMGGIGKTTLVKEFARQAREK-KLFDRVVFSEVSQTP-DIKKIQGEIAEKLG-LELSDEAEY 247 (1085)
Q Consensus 172 ~l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~-~~~~~~~~~ 247 (1085)
++++.+. -..-..++|+|.+|+|||||++.+.+....+ ..+++ +++-+.+.. .+.++.+.+-..+- ...++....
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~ 241 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVTEMQRLVKGEVVASTFDEPASR 241 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHH
Confidence 3455544 2344689999999999999999988765432 23434 346666543 23333332200000 011111111
Q ss_pred H-----HHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 248 R-----RASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 248 ~-----~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
. ......+++. +++.+||++||+..
T Consensus 242 r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 242 HVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 1 1112223332 58999999999854
No 252
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.82 E-value=0.024 Score=69.12 Aligned_cols=92 Identities=14% Similarity=0.199 Sum_probs=57.0
Q ss_pred ccccchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHH
Q 037935 161 EAFESRVSTLKSIQNALTD-------------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIK 227 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 227 (1085)
+.++|.+..++++.+++.. .....|.|+|.+|+||||||+.+....... .+.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~-----~i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE-----EEEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc-----EEEEEchH-----
Confidence 4578888888887776541 234579999999999999999998765321 23333211
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 228 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
+...... .....+..+.+......+.++++|+++.
T Consensus 274 ---------l~~~~~g-~~~~~l~~vf~~a~~~~p~il~iDEid~ 308 (806)
T 1ypw_A 274 ---------IMSKLAG-ESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp ---------HSSSSTT-HHHHHHHHHHHHHHHHCSEEEEEESGGG
T ss_pred ---------hhhhhhh-hHHHHHHHHHHHHHhcCCcEEEeccHHH
Confidence 1111111 1122334445544446789999999853
No 253
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.82 E-value=0.02 Score=62.05 Aligned_cols=48 Identities=25% Similarity=0.303 Sum_probs=37.7
Q ss_pred CccccchHHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 160 YEAFESRVSTLKSIQNALTD-----VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
-+.++|.+..++.+...+.. .....+.++|++|+||||||+.++....
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35578888777776655542 2447899999999999999999999874
No 254
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.77 E-value=0.069 Score=56.34 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=46.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 259 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 259 (1085)
..++++|+|.+|+||||++..+......+... .+..+.... .....+.++...+..+.+.........+......+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--
Confidence 45799999999999999999998877642222 345555432 22333334444444444321111112222223333
Q ss_pred CCcEEEEEeC
Q 037935 260 ENKILVILDN 269 (1085)
Q Consensus 260 ~~~~LlvlDd 269 (1085)
.+.=++|+|-
T Consensus 181 ~~~dlvIiDT 190 (296)
T 2px0_A 181 SEYDHVFVDT 190 (296)
T ss_dssp GGSSEEEEEC
T ss_pred cCCCEEEEeC
Confidence 3344677883
No 255
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.75 E-value=0.06 Score=61.05 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=34.8
Q ss_pred CccccchHHHHHHHHHHhc---cC---------CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 160 YEAFESRVSTLKSIQNALT---DV---------NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
-++++|.+..++++.+... .. -.+-+.|+|++|+||||||+.++....
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3568898877666655432 11 123489999999999999999998764
No 256
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.73 E-value=0.1 Score=53.04 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGE 232 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 232 (1085)
-.+++|+|.+|+|||||++.+.......+ ..++|+.... ...++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHH
Confidence 36899999999999999999986654332 2466666543 34444433
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.64 E-value=0.038 Score=55.18 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeC
Q 037935 168 STLKSIQNALTD--VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVS 221 (1085)
Q Consensus 168 ~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~ 221 (1085)
..+++|.+.+.. +...+|+|+|..|.|||||++.+.......+ ....+|...
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g--~~~g~v~~d 59 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG--LPAEVVPMD 59 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT--CCEEEEESG
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC--CceEEEecC
Confidence 455666666552 4567999999999999999999988765321 124555553
No 258
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.59 E-value=0.15 Score=51.68 Aligned_cols=56 Identities=29% Similarity=0.339 Sum_probs=36.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhc---c-CCCEEEEEEeCCCcCHHHHHHHHHHHhC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREK---K-LFDRVVFSEVSQTPDIKKIQGEIAEKLG 238 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 238 (1085)
-.+++|+|..|+|||||++.+....... . .-..++|+.-...+.... ...+.+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 3799999999999999999998754321 1 134578887655444333 233444443
No 259
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.59 E-value=0.02 Score=59.78 Aligned_cols=60 Identities=7% Similarity=0.107 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC
Q 037935 161 EAFESRVSTLKSIQNALT--DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ 222 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 222 (1085)
+.++|++..+.++.+.+. ......|.|+|.+|+|||++|+.+++...... ...+.++++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~--~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ--GPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT--SCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC--CCeEEEecCC
Confidence 347898888888776654 12335677999999999999999998654221 1234455554
No 260
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.17 E-value=0.038 Score=67.49 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=43.2
Q ss_pred ccccchHHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC
Q 037935 161 EAFESRVSTLKSIQNALTD---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ 222 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 222 (1085)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..... -...+-++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechh
Confidence 3578999988888877751 123479999999999999999999986422 12344555543
No 261
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.13 E-value=0.061 Score=57.34 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=33.4
Q ss_pred cchHHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 164 ESRVSTLKSIQNALT----DVNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 164 ~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
++-+...+++++.+. .+....|.|+|+.|+||||+++.++.....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344555566666553 455677999999999999999999887653
No 262
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.13 E-value=0.14 Score=55.57 Aligned_cols=57 Identities=28% Similarity=0.351 Sum_probs=37.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhc---cCC-CEEEEEEeCCCcCHHHHHHHHHHHhC
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREK---KLF-DRVVFSEVSQTPDIKKIQGEIAEKLG 238 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~ 238 (1085)
.-.++.|+|..|+|||||+..+....... +.. ..++|++....+....+ ..+++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~ 190 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 190 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcC
Confidence 34799999999999999999998865211 111 24688888666544433 33444443
No 263
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.09 E-value=0.34 Score=51.16 Aligned_cols=38 Identities=29% Similarity=0.376 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
...+|+|+|.+|+||||++..++.....++ ..+.++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~ 140 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAA 140 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEcc
Confidence 457999999999999999999988776432 23555554
No 264
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.08 E-value=0.05 Score=55.13 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=30.8
Q ss_pred HHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 168 STLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 168 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+.+...+......+|+|+|.+|+|||||+..+.....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344455554455678999999999999999999988754
No 265
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.07 E-value=0.065 Score=58.02 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=37.4
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|++..++.+...+..+ .-+.++|.+|+|||++|+.+.+...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34789999998888877653 4688999999999999999988764
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.06 E-value=0.029 Score=54.34 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+|.|.|++|+||||+|+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999988764
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.01 E-value=0.032 Score=53.73 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 268
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.00 E-value=0.034 Score=55.10 Aligned_cols=27 Identities=44% Similarity=0.479 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|.|+|+.|+||||+|+.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998764
No 269
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.98 E-value=0.41 Score=53.23 Aligned_cols=88 Identities=20% Similarity=0.298 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCCC----CchHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELS----DEAEYRRASRLYE 255 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~ 255 (1085)
..++|.|+|.+|+||||++..+......+... .+..|++.. .......+.......+.+.- ..+....+.....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 46899999999999999999999887654123 344555532 22333333334444443211 1122333344455
Q ss_pred HHH-cCCcEEEEEeCC
Q 037935 256 RLK-NENKILVILDNI 270 (1085)
Q Consensus 256 ~l~-~~~~~LlvlDdv 270 (1085)
.+. .+.. ++|+|-.
T Consensus 178 ~~~~~~~D-~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYD-VLLVDTA 192 (433)
T ss_dssp HHHHTTCS-EEEEECC
T ss_pred HHHhCCCC-EEEEECC
Confidence 554 2333 5666764
No 270
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.97 E-value=0.036 Score=59.03 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=36.6
Q ss_pred ccccchHHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTD--VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+.++|++..+.++.+.+.. .....|.|+|.+|+|||++|+.+++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 3578988888888877652 3345677999999999999999998653
No 271
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.92 E-value=0.082 Score=64.59 Aligned_cols=102 Identities=14% Similarity=0.196 Sum_probs=59.4
Q ss_pred cccchHHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHH
Q 037935 162 AFESRVSTLKSIQNALTD---------VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGE 232 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 232 (1085)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+.+... ...+-++++.-.... .
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~----~ 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH----T 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSS----C
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchh----h
Confidence 478988888888776651 1235799999999999999999999773 224445554322110 0
Q ss_pred HHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 037935 233 IAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKY 273 (1085)
Q Consensus 233 i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~~ 273 (1085)
+.+.+|.+.. -...+....+.+.+......+|+||+++..
T Consensus 530 ~~~l~g~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 VSRLIGAPPG-YVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp CSSSCCCCSC-SHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred HhhhcCCCCC-CcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 0011122111 111111122334444456789999999764
No 272
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.85 E-value=0.043 Score=58.41 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=31.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ 222 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 222 (1085)
++.+||+|.|-|||||||.+..+..-....+ + .+.-|.+-.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G-k-kVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG-K-RVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC-C-eEEEEecCC
Confidence 4679999999999999999999888776543 2 355667653
No 273
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.77 E-value=0.079 Score=54.79 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=32.8
Q ss_pred CccccchHHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 160 YEAFESRVSTLKSIQNALT---D---------VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
-++++|.+..++++.+... . .-.+-+.|+|++|+||||||+.++....
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457787766555543321 1 0112389999999999999999998764
No 274
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.76 E-value=0.43 Score=52.79 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
...+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999998877654
No 275
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.75 E-value=0.023 Score=59.46 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=34.4
Q ss_pred ccccchHHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 161 EAFESRVSTLKSIQNALT---D---------VNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
+.++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++....
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 457787766666655443 1 11234779999999999999999998653
No 276
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.72 E-value=0.087 Score=63.10 Aligned_cols=93 Identities=16% Similarity=0.277 Sum_probs=60.8
Q ss_pred CccccchHHHHHHHHHHhc----------c---CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCH
Q 037935 160 YEAFESRVSTLKSIQNALT----------D---VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDI 226 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~----------~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 226 (1085)
-+.+.|.+..++++.+.+. . ...+-|.++|++|+|||.+|+++++..... ++.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc----
Confidence 3456788888887776553 0 123567899999999999999999987632 233332
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 037935 227 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 272 (1085)
Q Consensus 227 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDdv~~ 272 (1085)
.+++.... ..+ ...+..+++..++..+++|++|+++.
T Consensus 545 ----~~l~s~~v----Ges-e~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 ----PELLTMWF----GES-EANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp ----HHHHTTTC----SSC-HHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ----chhhcccc----chH-HHHHHHHHHHHHHcCCceeechhhhH
Confidence 12222211 122 23466677777778899999999864
No 277
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.67 E-value=0.036 Score=53.78 Aligned_cols=24 Identities=13% Similarity=0.380 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998864
No 278
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.64 E-value=0.041 Score=53.70 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+.|.|+|+.|+||||+|+.+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998764
No 279
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.63 E-value=0.42 Score=50.93 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=39.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKL 237 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 237 (1085)
-.++.|.|.+|+||||+|..++.....++ ..++|++.. .+..++...+....
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 46899999999999999999987765443 567887765 56677777766543
No 280
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.61 E-value=0.034 Score=53.79 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEF 202 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v 202 (1085)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 281
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.60 E-value=0.037 Score=60.60 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=35.5
Q ss_pred CccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 160 YEAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 160 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
-+.++|.+..++.+.........+-+.|+|.+|+|||++|+.+++...
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred chhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 345889988666554444333334588999999999999999998764
No 282
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.48 E-value=0.056 Score=51.21 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
..++++|+|..|+||||++..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 4679999999999999999999987764
No 283
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.45 E-value=0.054 Score=53.63 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
....+|+|+|+.|+||||+++.+.....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999998776
No 284
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.44 E-value=0.38 Score=53.20 Aligned_cols=98 Identities=21% Similarity=0.327 Sum_probs=63.1
Q ss_pred HHHHhc-cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc-CHHHHHHHHHHHhCCC------C---
Q 037935 173 IQNALT-DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE------L--- 241 (1085)
Q Consensus 173 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~--- 241 (1085)
.++.+. =.+-..++|+|.+|+|||+|++.+.+.... .+-+.++++-+.+.. .+.++.+++...-... .
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 455554 234468999999999999999999887532 234677888887654 5677777777653221 0
Q ss_pred ----CCchHH------HHHHHHHHHHH--cCCcEEEEEeCCC
Q 037935 242 ----SDEAEY------RRASRLYERLK--NENKILVILDNIW 271 (1085)
Q Consensus 242 ----~~~~~~------~~~~~~~~~l~--~~~~~LlvlDdv~ 271 (1085)
.+.+.. .....+.++++ +++.+|+++||+.
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 111111 11223344444 4899999999984
No 285
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.44 E-value=0.094 Score=47.42 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=19.8
Q ss_pred cceEEEecCCcccCCch-hhhccccccEEeccCc
Q 037935 542 KLRVVDLTRVRLFSLPS-SIGQLTKLRMLDLTDC 574 (1085)
Q Consensus 542 ~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~Ls~~ 574 (1085)
+|++|+|++|+|+.+|. .|..+++|++|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 45666666666666653 3455666666666666
No 286
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.41 E-value=0.74 Score=52.12 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
..++|+|+|.+|+||||++..+......+ ... +..|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~k-VllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK-GWK-TCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT-TCC-EEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCe-EEEEec
Confidence 46799999999999999999998877643 232 444554
No 287
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.39 E-value=0.059 Score=54.32 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 166 RVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 166 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.++..+.+.+.+.....++|+|+|.+|+|||||+..+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344455555555455778999999999999999999988764
No 288
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.37 E-value=0.046 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.-.+++|+|+.|+||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999764
No 289
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.36 E-value=0.047 Score=52.96 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFAR 204 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~ 204 (1085)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.34 E-value=0.037 Score=53.30 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988654
No 291
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.30 E-value=0.5 Score=49.65 Aligned_cols=87 Identities=21% Similarity=0.267 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-cCHHHHHHHHHHHhCCCCC----CchHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLELS----DEAEYRRASRLYER 256 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~ 256 (1085)
..+++++|.+|+||||++..+......++ ..+.++..... ......++...+..+.+.- ..+....+....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 57999999999999999999988776432 24566665432 2233334445555554321 11223333345555
Q ss_pred HHcCCcEEEEEeCC
Q 037935 257 LKNENKILVILDNI 270 (1085)
Q Consensus 257 l~~~~~~LlvlDdv 270 (1085)
+.....=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 53222236777753
No 292
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.24 E-value=0.22 Score=52.74 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+|+|.|..|+||||+++.+..-..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999987664
No 293
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.22 E-value=0.1 Score=54.69 Aligned_cols=29 Identities=21% Similarity=0.071 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
+...+|+|+|..|+||||||+.+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999998887654
No 294
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.21 E-value=0.054 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.+|.|.|+.|+||||+|+.+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999998763
No 295
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.16 E-value=0.057 Score=53.46 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998866
No 296
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.09 E-value=0.046 Score=54.28 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..+|+|.|+.|+||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988763
No 297
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.04 E-value=0.47 Score=52.46 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCCCCC----CchHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELS----DEAEYRRASRLYE 255 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~ 255 (1085)
..++|.++|.+|+||||++..+......++ . .+..+.... .....+.+....+..+.+.. ..+..........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G-~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG-Y-KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 368999999999999999999988776542 2 344444432 12233334444455554321 1122222333333
Q ss_pred HHHcCCcEEEEEeCC
Q 037935 256 RLKNENKILVILDNI 270 (1085)
Q Consensus 256 ~l~~~~~~LlvlDdv 270 (1085)
.+.....=++|+|-.
T Consensus 174 ~a~~~~~DvvIIDTa 188 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTA 188 (433)
T ss_dssp HTTTTTCSEEEEEEC
T ss_pred HHHhcCCCEEEEECC
Confidence 433223345577754
No 298
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.00 E-value=0.2 Score=51.43 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
-.+++|+|+.|+|||||++.+...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 479999999999999999998843
No 299
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.99 E-value=1.3 Score=47.19 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC-CcCHHHHHHHHHHHhCC
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGL 239 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 239 (1085)
....+++|+|..|+||||+++.+....+..+ ..+.++...- .....+-++...+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 4568999999999999999999988766432 2345544432 22344445556666664
No 300
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.98 E-value=0.06 Score=52.81 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.+|.|.|++|+||||+|+.+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987653
No 301
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.96 E-value=0.23 Score=55.24 Aligned_cols=98 Identities=26% Similarity=0.347 Sum_probs=63.2
Q ss_pred HHHHhc-cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc-CHHHHHHHHHHHhCCC-------C--
Q 037935 173 IQNALT-DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE-------L-- 241 (1085)
Q Consensus 173 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~-- 241 (1085)
.++.|. =.+-..++|+|.+|+|||+|++.+.+.... .+-+.++++-+.+.. ...++.+++...-... .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 345554 234467899999999999999999987532 234778888887655 5677777776542221 0
Q ss_pred -----CCchHH------HHHHHHHHHHH--cCCcEEEEEeCCC
Q 037935 242 -----SDEAEY------RRASRLYERLK--NENKILVILDNIW 271 (1085)
Q Consensus 242 -----~~~~~~------~~~~~~~~~l~--~~~~~LlvlDdv~ 271 (1085)
.+.+.. .....+.++++ +++.+|+++||+.
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 111111 12233445555 3899999999984
No 302
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.95 E-value=0.084 Score=57.96 Aligned_cols=46 Identities=26% Similarity=0.216 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHHHhc-------------c--CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 162 AFESRVSTLKSIQNALT-------------D--VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.++|.+..++.+...+. . ...+.+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36888888888877762 0 1346789999999999999999998764
No 303
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.91 E-value=0.053 Score=52.32 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+.|.|+|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.90 E-value=0.069 Score=51.50 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 305
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.89 E-value=0.053 Score=52.62 Aligned_cols=26 Identities=42% Similarity=0.528 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.++|.|+|++|+||||+|+.+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46788999999999999999998764
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.89 E-value=0.07 Score=52.41 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..+|.|.|++|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999988763
No 307
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.88 E-value=0.065 Score=51.25 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+|+|.|+.|+||||+|+.+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998765
No 308
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.87 E-value=0.065 Score=55.23 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
++|.|+|+.|+||||+|+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5789999999999999999988764
No 309
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.79 E-value=0.08 Score=51.63 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
...+|.|+|++|+||||+++.+.......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999887643
No 310
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.77 E-value=0.41 Score=48.93 Aligned_cols=47 Identities=13% Similarity=0.262 Sum_probs=32.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGE 232 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 232 (1085)
-.++.|+|.+|+||||+|.+++......+ ..++|++.... ..++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~--~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMG--EPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEESSSC--HHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEccCC--HHHHHHH
Confidence 36899999999999999988876654321 35777776543 4444433
No 311
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.77 E-value=0.097 Score=57.82 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998763
No 312
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.69 E-value=0.069 Score=60.68 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 162 AFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.++|++..++.+...+..+ +-|.++|++|+|||++|+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4789999888888777643 4688999999999999999988654
No 313
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.68 E-value=0.067 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.65 E-value=0.075 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
....|.|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999886
No 315
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.65 E-value=0.069 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFAR 204 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~ 204 (1085)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 316
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.64 E-value=0.07 Score=53.16 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+|+|+|+.|+||||+++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987653
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.61 E-value=0.06 Score=53.50 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
..++|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998865
No 318
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.58 E-value=0.075 Score=56.78 Aligned_cols=51 Identities=18% Similarity=0.097 Sum_probs=34.9
Q ss_pred HHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHhhc-cCCCEEEEEEeCCC
Q 037935 172 SIQNALTD-VNVSIIGVYGMGGIGKTTLVKEFARQAREK-KLFDRVVFSEVSQT 223 (1085)
Q Consensus 172 ~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 223 (1085)
++++.+.. ..-..++|+|.+|+|||+|++.+.+....+ ..+.+ +++-+.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 45666652 344688999999999999999998876532 22333 45666544
No 319
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.55 E-value=0.12 Score=54.33 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 320
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.52 E-value=0.074 Score=51.85 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987643
No 321
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.45 E-value=0.068 Score=53.10 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998763
No 322
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.45 E-value=0.086 Score=50.84 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.++|+|..|+|||||++.+.....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987753
No 323
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.41 E-value=0.059 Score=52.59 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998664
No 324
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.39 E-value=0.063 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988764
No 325
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.34 E-value=0.067 Score=51.74 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+.|.|+|++|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4578999999999999999987643
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.34 E-value=0.083 Score=51.99 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+|+|.|+.|+||||+|+.+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988764
No 327
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.31 E-value=0.092 Score=52.05 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
....+|+|.|+.|+||||+|+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998764
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.29 E-value=0.081 Score=53.57 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988654
No 329
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.24 E-value=0.072 Score=52.92 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFAR 204 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~ 204 (1085)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 330
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.24 E-value=0.086 Score=54.17 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+|+|+|+.|+||||+++.+.+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999997764
No 331
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.22 E-value=0.086 Score=52.23 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.+..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999999875
No 332
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.20 E-value=0.1 Score=51.88 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+||.|.|++|+||||.|+.+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3568999999999999999999998764
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.20 E-value=0.095 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988654
No 334
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.20 E-value=0.065 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36799999999999999999987653
No 335
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.17 E-value=0.075 Score=51.06 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
++|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 336
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.16 E-value=0.094 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988653
No 337
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.15 E-value=0.099 Score=52.21 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+|+|+|..|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988654
No 338
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.12 E-value=0.31 Score=63.95 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCC------CchHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS------DEAEYRRASRLY 254 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~ 254 (1085)
.-++|.|+|++|+|||+||.++......++ ..++|+++...++... ++.++.+.. ..........+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 457999999999999999999988765432 3578888888777666 455663321 112222233333
Q ss_pred HHHHcCCcEEEEEeCCC
Q 037935 255 ERLKNENKILVILDNIW 271 (1085)
Q Consensus 255 ~~l~~~~~~LlvlDdv~ 271 (1085)
+..++.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 34445788899999985
No 339
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.12 E-value=0.47 Score=49.91 Aligned_cols=88 Identities=20% Similarity=0.275 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcC-HHHHHHHHHHHhCCCCC----CchHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPD-IKKIQGEIAEKLGLELS----DEAEYRRASRLYE 255 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~ 255 (1085)
..++++|+|.+|+||||++..++.....++ ..+.++....... ....+....+..+.+.- .....+.......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999988776432 2355555532221 11223344555554321 1122222233344
Q ss_pred HHHcCCcEEEEEeCC
Q 037935 256 RLKNENKILVILDNI 270 (1085)
Q Consensus 256 ~l~~~~~~LlvlDdv 270 (1085)
.+...+.=++|+|--
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 442133346777864
No 340
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.08 E-value=0.09 Score=52.29 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998754
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.01 E-value=0.1 Score=52.20 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
.+|+|.|+.|+||||+|+.+.+.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 589999999999999999999987643
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.00 E-value=0.089 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+|+|.|+.|+||||+|+.+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998764
No 343
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.91 E-value=0.079 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFA 203 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~ 203 (1085)
.-.+++|+|..|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34789999999999999999854
No 344
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.89 E-value=0.21 Score=51.06 Aligned_cols=28 Identities=18% Similarity=0.067 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
....+|.|.|++|+||||+|+.+.+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3557899999999999999999988763
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.88 E-value=0.1 Score=54.05 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.87 E-value=0.11 Score=49.72 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 347
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.86 E-value=0.096 Score=52.11 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
...+|+|+|+.|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999764
No 348
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.80 E-value=0.11 Score=50.72 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
..-.+|+|+|+.|+||||+|+.+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999998864
No 349
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.74 E-value=0.11 Score=51.48 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..+|.|.|+.|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988764
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.73 E-value=0.11 Score=51.02 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..+|+|.|+.|+||||+|+.+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988754
No 351
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.71 E-value=0.11 Score=48.93 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345799999999999999999998865
No 352
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.70 E-value=0.098 Score=52.01 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFAR 204 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~ 204 (1085)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 353
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.63 E-value=0.093 Score=52.20 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34799999999999999999998765
No 354
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.53 E-value=0.32 Score=47.67 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHH
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAE 235 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 235 (1085)
.|+|.|..|+||||+++.+.+..... .+.. +...-.......+..++++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-g~~v-~~~~~~~~~~~g~~~~~~~~ 51 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-GKKV-ILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC-CC-E-EEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeE-EEeeCCCCCcHHHHHHHHHH
Confidence 68999999999999999999877532 2433 22222222234444455544
No 355
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.53 E-value=0.1 Score=53.76 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+|+|+|+.|+||||+++.+.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346999999999999999999998764
No 356
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.47 E-value=0.082 Score=51.36 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999987654
No 357
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.46 E-value=0.68 Score=46.15 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
-.++|.|++|+||||+|+.+.+...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998775
No 358
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.44 E-value=0.12 Score=51.95 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...|.|.|+.|+||||+|+.+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999988764
No 359
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.39 E-value=1.1 Score=49.58 Aligned_cols=87 Identities=22% Similarity=0.269 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHH--HHHHHHHHhCCCCC----CchHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKK--IQGEIAEKLGLELS----DEAEYRRASRLY 254 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~~----~~~~~~~~~~~~ 254 (1085)
...+++|+|.+|+||||++..+......++ ..+..+.. ..+.... .++...+..+.+.- ..+..+.+....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 357999999999999999999998776442 23555555 3333322 23445555554321 112223334445
Q ss_pred HHHHcCCcEEEEEeCC
Q 037935 255 ERLKNENKILVILDNI 270 (1085)
Q Consensus 255 ~~l~~~~~~LlvlDdv 270 (1085)
+.++...-=++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 5553122225666743
No 360
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.39 E-value=0.12 Score=55.02 Aligned_cols=42 Identities=24% Similarity=0.202 Sum_probs=29.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeC
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVS 221 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~ 221 (1085)
....+|+|+|..|+|||||++.+..-......-..+.+|.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 345799999999999999999998866532111235555543
No 361
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.39 E-value=0.098 Score=49.89 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
.++++|+|..|+|||||++.+..-...+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3689999999999999999998876643
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.36 E-value=0.12 Score=50.64 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998774
No 363
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.34 E-value=0.092 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998754
No 364
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.32 E-value=0.24 Score=52.75 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=32.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCc
Q 037935 179 DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTP 224 (1085)
Q Consensus 179 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 224 (1085)
....++|+|+|-||+||||+|..+......++ . .++-|+.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G-~-~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG-K-RVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC-C-eEEEEeCCCCC
Confidence 45678999999999999999999988776542 2 46667765433
No 365
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.28 E-value=0.16 Score=52.32 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988653
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.28 E-value=0.15 Score=53.95 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
...+++|+|.+|+||||+++.+..-....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999998876643
No 367
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.25 E-value=0.15 Score=48.67 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 3579999999999999999999887653
No 368
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.25 E-value=0.14 Score=56.82 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=36.8
Q ss_pred ccccchHHHHHHHHHHhcc--------------CCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 161 EAFESRVSTLKSIQNALTD--------------VNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
..++|.+..++.+..++.. ...+-|.++|++|+||||+|+.++.....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3478888888877665521 13466889999999999999999998753
No 369
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.19 E-value=0.12 Score=51.52 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCE
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDR 214 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~ 214 (1085)
..+|+|.|+.|+||||+|+.+.+..... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999877643 4555
No 370
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.15 E-value=0.14 Score=51.27 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCE
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDR 214 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~ 214 (1085)
..+|+|.|+.|+||||+|+.+.+..... +++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999887643 3554
No 371
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.06 E-value=0.11 Score=52.99 Aligned_cols=26 Identities=38% Similarity=0.342 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
-.+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999998765
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.05 E-value=0.075 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
.+|+|.|..|+||||+|+.+......
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999987753
No 373
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.97 E-value=0.15 Score=52.36 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
...+|+|.|..|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44799999999999999999998865
No 374
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.96 E-value=0.14 Score=52.78 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
....+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3557999999999999999999988654
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.94 E-value=0.14 Score=51.28 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 376
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.93 E-value=0.13 Score=51.51 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.-.+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 347999999999999999999988654
No 377
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.91 E-value=0.19 Score=48.71 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=27.8
Q ss_pred HHHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 170 LKSIQNALTD-VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 170 ~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+..+..++.. +....+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444444432 2234799999999999999999998764
No 378
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.89 E-value=0.31 Score=53.10 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=29.9
Q ss_pred HHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 170 LKSIQNALT--DVNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 170 ~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
..++.+.+. .++..+|+|+|.+|+||||++..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444454444 456789999999999999999999877643
No 379
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.82 E-value=0.16 Score=50.63 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988765
No 380
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.75 E-value=0.16 Score=51.11 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..+|+|.|++|+||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988764
No 381
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.74 E-value=0.13 Score=51.91 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998765
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.72 E-value=0.13 Score=51.95 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...|.|.|+.|+||||+|+.+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999988653
No 383
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.69 E-value=0.66 Score=47.46 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=32.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEI 233 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 233 (1085)
-.++.|.|.+|+|||++|.+++.+...+. -..+++++.. .+..++.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESS--SCHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeeccc--CCHHHHHHHH
Confidence 36899999999999999988765432221 2345666554 3455555444
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.65 E-value=0.15 Score=49.17 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
-.+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468899999999999999999887643
No 385
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.64 E-value=0.33 Score=48.91 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCE
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDR 214 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~ 214 (1085)
...+|+|.|+.|+||||+++.+.+.... +++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~ 56 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV 56 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc
Confidence 4478999999999999999999998865 3544
No 386
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.63 E-value=0.14 Score=49.87 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+++|+|..|+||||+++.+....+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999988766
No 387
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.60 E-value=0.7 Score=49.28 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=38.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKL 237 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 237 (1085)
-.++.|.|.+|+||||+|..++......+ ..++|++. +.+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC--CCCHHHHHHHHHHHh
Confidence 36899999999999999999988765421 35677655 456777777765543
No 388
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.59 E-value=0.17 Score=49.10 Aligned_cols=115 Identities=11% Similarity=-0.015 Sum_probs=58.9
Q ss_pred CCCcceeeeccCCCccccc----cChhhhcCCCcceEEEecCCcccC-----CchhhhccccccEEeccCcccccccchh
Q 037935 513 CPQLEFLHIDPKITFAELN----IPDNFFKGMKKLRVVDLTRVRLFS-----LPSSIGQLTKLRMLDLTDCLQLKFIVPN 583 (1085)
Q Consensus 513 ~~~Lr~L~l~~~~~~~~~~----l~~~~~~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~L~~L~Ls~~~~l~~lp~~ 583 (1085)
-+.|++|++.+++. +.. .....+..-+.|+.|+|++|.|.. +...+..-+.|++|+|++| .|..--..
T Consensus 40 n~~L~~L~L~~nn~--igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ 116 (197)
T 1pgv_A 40 DTDLKEVNINNMKR--VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA 116 (197)
T ss_dssp CSSCCEEECTTCCS--SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred CCCccEEECCCCCC--CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence 35667777765421 111 112234556677777777777753 3445566677777777777 66532111
Q ss_pred h----hhccccCCEEeccCCCcchhhcccCCccccccHHHhhcCCCCcEEEEEec
Q 037935 584 I----LSSFTRLEELYMGSCSIKWEVRKGNSERSNASLDELMHLQRLTTLEIDVE 634 (1085)
Q Consensus 584 ~----~~~L~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 634 (1085)
. +..=+.|++|+|+++....... .......+.+..-+.|+.|+++.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~----~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGN----QVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCH----HHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCH----HHHHHHHHHHHhCCCcCeEeccCC
Confidence 1 2333457777776542200000 000112334555566776666544
No 389
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.45 E-value=0.16 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 390
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.44 E-value=0.13 Score=51.43 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHc-
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN- 259 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~- 259 (1085)
.-.++.|+|..|.||||++..+.++...++ . .++.+...... + ....+++.++....... ......+++.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~-~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-V-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVE-VESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEE-ESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-C-EEEEEEeccCc--h-HHHHHHHhcCCCccccc-cCCHHHHHHHHHHH
Confidence 457899999999999999998888776542 2 23334333221 1 22344555554332211 0011223333332
Q ss_pred ---CCcEEEEEeCCCC
Q 037935 260 ---ENKILVILDNIWK 272 (1085)
Q Consensus 260 ---~~~~LlvlDdv~~ 272 (1085)
++.-+||+|.+..
T Consensus 85 ~~~~~~dvViIDEaQ~ 100 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQF 100 (223)
T ss_dssp TSCTTCCEEEECSGGG
T ss_pred hhCCCCCEEEEecCcc
Confidence 2344999999864
No 391
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.32 E-value=0.15 Score=50.41 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
..+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998865
No 392
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.25 E-value=0.18 Score=53.72 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.+|+|.|+.|+||||||+.+.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988653
No 393
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.23 E-value=0.16 Score=51.62 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.. .+++|+|+.|+|||||.+.+.--.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999999997643
No 394
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.18 E-value=0.18 Score=59.54 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=37.7
Q ss_pred ccccchHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 161 EAFESRVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 161 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..++|.+..++.+...+..+ ..+.|+|++|+||||+|+.+.....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45789988888877777644 5889999999999999999998654
No 395
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.15 E-value=0.38 Score=53.80 Aligned_cols=28 Identities=36% Similarity=0.535 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
...+++|+|..|+||||+++.+......
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 4579999999999999999999887654
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.00 E-value=0.17 Score=52.95 Aligned_cols=24 Identities=21% Similarity=0.632 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFAR 204 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~ 204 (1085)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.99 E-value=0.18 Score=50.54 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFAR 204 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~ 204 (1085)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 398
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.99 E-value=0.23 Score=52.36 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
...+++|+|..|+||||+++.++.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3479999999999999999999887664
No 399
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.92 E-value=0.2 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988764
No 400
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.90 E-value=0.51 Score=49.90 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=35.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEK 236 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 236 (1085)
.-.+++|+|.+|+|||||++.+......... ..++|+.... +..++.+.+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCcC--CHHHHHHHHHHH
Confidence 3469999999999999999999887664311 1466665532 344454444443
No 401
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.88 E-value=0.64 Score=52.14 Aligned_cols=96 Identities=14% Similarity=0.202 Sum_probs=58.8
Q ss_pred HHHHhc-cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcC-HHHHHHHHHH----HhCC-------
Q 037935 173 IQNALT-DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPD-IKKIQGEIAE----KLGL------- 239 (1085)
Q Consensus 173 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~----~l~~------- 239 (1085)
.++.|. -.+-..++|.|..|+|||+|++.+.+.. +-+.++++-+.+... +.++.+++-+ ..+.
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtv 292 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTV 292 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEE
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceE
Confidence 456554 2344689999999999999999987653 346788888876654 5666666432 1110
Q ss_pred ---CCCCchHHH------HHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 240 ---ELSDEAEYR------RASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 240 ---~~~~~~~~~------~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
...+..... ....+.++++ +++.+|+++|++..
T Consensus 293 vV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR 335 (588)
T 3mfy_A 293 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSR 335 (588)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTT
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHH
Confidence 011111111 1122333343 58999999999853
No 402
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.78 E-value=0.2 Score=52.89 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
++|.|+|+.|+||||||+.+.....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999988643
No 403
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.62 E-value=0.53 Score=47.44 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=34.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
...|.|.|..|+||||+++.+.+..... ++..+....-+......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeecCCCCCHHHHHHHHHH
Confidence 3689999999999999999999988754 465344444333323333334433
No 404
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.60 E-value=1.6 Score=49.08 Aligned_cols=52 Identities=15% Similarity=0.036 Sum_probs=37.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEK 236 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 236 (1085)
-.++.|.|.+|+||||+|..++.....+.. ..++|++.. .+..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 368999999999999999999887654311 247776654 4566777766543
No 405
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.60 E-value=0.22 Score=49.11 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+|.|.|++|+||+|.|+.+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998764
No 406
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.58 E-value=0.2 Score=50.14 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..|.|.|+.|+||||+|+.+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998764
No 407
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.55 E-value=0.12 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-HHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFA-RQA 206 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~-~~~ 206 (1085)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 653
No 408
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.54 E-value=0.16 Score=50.36 Aligned_cols=24 Identities=38% Similarity=0.283 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
-.+++|+|..|+|||||++.+.--
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999876
No 409
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.54 E-value=0.34 Score=53.62 Aligned_cols=99 Identities=23% Similarity=0.279 Sum_probs=60.2
Q ss_pred HHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHhhccC--CCEEEEEEeCCCc-CHHHHHHHHHHHhCCC-------C
Q 037935 173 IQNALTD-VNVSIIGVYGMGGIGKTTLVKEFARQAREKKL--FDRVVFSEVSQTP-DIKKIQGEIAEKLGLE-------L 241 (1085)
Q Consensus 173 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~ 241 (1085)
.++.+.. ..-..++|.|.+|+|||+|+..+.+.....+. =+.++++-+.+.. .+.++.+++...=... .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 4555541 23356788999999999999999998764211 1356677776544 5667777776542111 1
Q ss_pred CCchHH------HHHHHHHHHHH--cCCcEEEEEeCCC
Q 037935 242 SDEAEY------RRASRLYERLK--NENKILVILDNIW 271 (1085)
Q Consensus 242 ~~~~~~------~~~~~~~~~l~--~~~~~LlvlDdv~ 271 (1085)
.+.+.. .....+.++++ +++.+|+++||+.
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 111111 11223344554 5899999999974
No 410
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.48 E-value=0.22 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988763
No 411
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.46 E-value=0.54 Score=46.85 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=35.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAE 235 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 235 (1085)
.....|.|.|..|+||||+++.+.+.......+..+....-+.....-+.+++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 34578999999999999999999998775123444332223333333444455544
No 412
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.46 E-value=0.18 Score=51.07 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|+.|+|||||.+.+.--.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44799999999999999999987543
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.46 E-value=0.24 Score=50.23 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...|.|.|+.|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 414
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.42 E-value=0.21 Score=49.84 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988763
No 415
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.41 E-value=0.15 Score=51.20 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.-.+++|+|..|+|||||.+.+.--
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998754
No 416
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.38 E-value=0.22 Score=52.00 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.++|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998754
No 417
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.34 E-value=0.81 Score=51.56 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=58.0
Q ss_pred HHHHhc-cCCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCC-cCHHHHHHHHHH----HhCCC------
Q 037935 173 IQNALT-DVNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQT-PDIKKIQGEIAE----KLGLE------ 240 (1085)
Q Consensus 173 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~----~l~~~------ 240 (1085)
.++.|. =.+-..++|.|..|+|||+|+.++.+.. +-+.++++-+.+. ..+.++++++-+ ..+..
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtv 297 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTV 297 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEE
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceE
Confidence 456555 2345789999999999999999998763 2467888888765 345555555422 11210
Q ss_pred ----CCCchHHH------HHHHHHHHHH-cCCcEEEEEeCCC
Q 037935 241 ----LSDEAEYR------RASRLYERLK-NENKILVILDNIW 271 (1085)
Q Consensus 241 ----~~~~~~~~------~~~~~~~~l~-~~~~~LlvlDdv~ 271 (1085)
..+..... ....+.++++ .++.+|+++|++.
T Consensus 298 vV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 298 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 01111111 1223334444 5899999999974
No 418
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.33 E-value=0.8 Score=59.37 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCC------CchHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS------DEAEYRRASRLYE 255 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~ 255 (1085)
-.+|.|.|.+|+||||||.++......++ ..++|++........ .++.++.+.. ..+..+....+..
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 36899999999999999999988776432 357888887766543 1566664321 1122222222222
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 037935 256 RLKNENKILVILDNIWKY 273 (1085)
Q Consensus 256 ~l~~~~~~LlvlDdv~~~ 273 (1085)
.....+.-+||+|.+...
T Consensus 805 lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHccCCCEEEEechhhh
Confidence 222456679999998643
No 419
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.31 E-value=0.27 Score=50.94 Aligned_cols=27 Identities=41% Similarity=0.524 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...++.++|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457888999999999999999988776
No 420
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.31 E-value=0.22 Score=52.97 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
....+|+|+|..|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 421
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.24 E-value=0.29 Score=52.09 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
..++|+|+|.+|+||||++..++.....++ ..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g--~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG--YKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeC
Confidence 458999999999999999999988766432 23555554
No 422
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.22 E-value=0.63 Score=51.16 Aligned_cols=97 Identities=22% Similarity=0.279 Sum_probs=59.1
Q ss_pred HHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCC----EEEEEEeCCC-cCHHHHHHHHHHHhCC-------
Q 037935 173 IQNALTD-VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFD----RVVFSEVSQT-PDIKKIQGEIAEKLGL------- 239 (1085)
Q Consensus 173 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~-~~~~~~~~~i~~~l~~------- 239 (1085)
.++.+.. .+-..++|.|.+|+|||+|+.++.+..... -+ .++++-+.+. ..+.++.+++...=..
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~--~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ 218 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVL--DSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFM 218 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCS--SCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhc--cCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEE
Confidence 4555541 223457899999999999999998876532 23 5667777654 3566777776553111
Q ss_pred CCCCchHH------HHHHHHHHHHH--cCCcEEEEEeCCC
Q 037935 240 ELSDEAEY------RRASRLYERLK--NENKILVILDNIW 271 (1085)
Q Consensus 240 ~~~~~~~~------~~~~~~~~~l~--~~~~~LlvlDdv~ 271 (1085)
...+.+.. .....+.++++ .++.+|+++||+.
T Consensus 219 atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 219 NLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11111111 12234455665 3899999999984
No 423
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.10 E-value=0.18 Score=51.24 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999997643
No 424
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.09 E-value=0.65 Score=46.00 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAE 235 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 235 (1085)
..|.|-|..|+||||+++.+.+..... ++..+.+..-+....+.+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999988754 3433444443333344555555554
No 425
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=89.04 E-value=1.3 Score=47.92 Aligned_cols=53 Identities=9% Similarity=-0.063 Sum_probs=35.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEI 233 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 233 (1085)
.-.++..++|..|.||++.++.+.+..... .|+....+.+....++.++...+
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 68 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLC 68 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHH
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHh
Confidence 345789999999999999999998876533 35432223344455665555443
No 426
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.03 E-value=0.22 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998753
No 427
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=89.03 E-value=4.6 Score=43.68 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.....|+|+|.+|+|||||...+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35578999999999999999998764
No 428
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.84 E-value=1.6 Score=49.20 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=36.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIA 234 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 234 (1085)
-.++.|.|.+|+||||+|..+......+.. ..++|++.. .+..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESS--SCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECC--CCHHHHHHHHH
Confidence 368999999999999999999887764321 247777654 34566666554
No 429
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.84 E-value=0.16 Score=53.34 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
+..+|+|.|..|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 430
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.83 E-value=0.21 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
..++|.|+|+.|+||||||..+++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34699999999999999999998754
No 431
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.82 E-value=0.36 Score=53.01 Aligned_cols=99 Identities=22% Similarity=0.285 Sum_probs=58.4
Q ss_pred HHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHHHHhhc--------cCCC-EEEEEEeCCCc-CHHHHHHHHHHHhCC--
Q 037935 173 IQNALTD-VNVSIIGVYGMGGIGKTTLVKEFARQAREK--------KLFD-RVVFSEVSQTP-DIKKIQGEIAEKLGL-- 239 (1085)
Q Consensus 173 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-- 239 (1085)
.++.+.. .+-..++|.|.+|+|||+|+.++.+..... ++=+ .++++-+.+.. .+.++.+++...=..
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 3555541 233567899999999999999998876531 1122 56667776543 566666665442101
Q ss_pred ------CCCCchHH-----HHHHHHHHHHH--cCCcEEEEEeCCC
Q 037935 240 ------ELSDEAEY-----RRASRLYERLK--NENKILVILDNIW 271 (1085)
Q Consensus 240 ------~~~~~~~~-----~~~~~~~~~l~--~~~~~LlvlDdv~ 271 (1085)
..++.... .....+.++++ +++.+|+++||+.
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 01111111 12234455555 3899999999984
No 432
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.80 E-value=0.32 Score=52.50 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
...+++|+|..|+||||+++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3479999999999999999999887664
No 433
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.78 E-value=0.27 Score=46.18 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 434
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.78 E-value=0.19 Score=51.92 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|+.|+|||||.+.+.--.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44799999999999999999987643
No 435
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.77 E-value=0.22 Score=50.99 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.-.+++|+|..|+|||||.+.+.--
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999864
No 436
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.77 E-value=0.27 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
..++|.|+|+.|+||||||..+++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34789999999999999999998864
No 437
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.71 E-value=0.42 Score=46.34 Aligned_cols=93 Identities=13% Similarity=0.155 Sum_probs=63.7
Q ss_pred hhhcCCCcceEEEecCC-cccC-----CchhhhccccccEEeccCcccccccch----hhhhccccCCEEeccCCCcchh
Q 037935 535 NFFKGMKKLRVVDLTRV-RLFS-----LPSSIGQLTKLRMLDLTDCLQLKFIVP----NILSSFTRLEELYMGSCSIKWE 604 (1085)
Q Consensus 535 ~~~~~l~~Lr~L~Ls~~-~i~~-----lp~~i~~L~~L~~L~Ls~~~~l~~lp~----~~~~~L~~L~~L~L~~~~~~~~ 604 (1085)
....+-+.|+.|+|+++ .|.. +-..+..-+.|+.|+|++| .+..--. +.+..=+.|++|+|++|.+...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 34566788999999986 6643 4556777899999999999 7764222 2245667899999999998311
Q ss_pred hcccCCccccccHHHhhcCCCCcEEEEEecc
Q 037935 605 VRKGNSERSNASLDELMHLQRLTTLEIDVED 635 (1085)
Q Consensus 605 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 635 (1085)
. .....+.+..-+.|+.|+++++.
T Consensus 114 G-------a~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 114 L-------LARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp H-------HHHHHHHTTTTCCCSEEECCCCS
T ss_pred H-------HHHHHHHHhhCCceeEEECCCCc
Confidence 0 11233445556678888887653
No 438
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.63 E-value=0.22 Score=51.66 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|+.|+|||||++.+.--.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34799999999999999999997643
No 439
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.48 E-value=0.2 Score=51.57 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|..|+|||||.+.+.--.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44799999999999999999987643
No 440
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.48 E-value=0.28 Score=46.56 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFAR 204 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~ 204 (1085)
..|+|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999875
No 441
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.45 E-value=0.21 Score=50.86 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|..|+|||||.+.++--.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999997643
No 442
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.45 E-value=0.24 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.-.+++|+|..|+|||||.+.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4479999999999999999999874
No 443
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.44 E-value=0.21 Score=50.43 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999997643
No 444
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.41 E-value=0.22 Score=50.74 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|..|+|||||.+.+.--.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44799999999999999999997643
No 445
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.40 E-value=0.18 Score=50.14 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
-.+++|+|..|+|||||.+.++--.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987643
No 446
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.36 E-value=1.5 Score=42.74 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHH
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEK 236 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 236 (1085)
.|+|=|.-|+||||.++.+++..+.++ .+ +++..-+......+..+.++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~~-v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-KK-VILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-Cc-EEEEECCCCCcHHHHHHHHhhc
Confidence 367889999999999999999887653 33 4444444444455555555543
No 447
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.32 E-value=0.21 Score=50.97 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|..|+|||||.+.+.--.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999987643
No 448
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.27 E-value=0.88 Score=45.07 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEE
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRV 215 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~ 215 (1085)
...|.|-|..|+||||+++.+.+..... .+..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcc
Confidence 3688999999999999999999988654 35543
No 449
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.25 E-value=0.24 Score=51.23 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|..|+|||||++.+.--.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34799999999999999999997643
No 450
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.21 E-value=0.24 Score=48.08 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 037935 184 IIGVYGMGGIGKTTLVKEFAR 204 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~ 204 (1085)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 451
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.17 E-value=0.22 Score=51.24 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|..|+|||||.+.+.--.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999997643
No 452
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.15 E-value=0.28 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 453
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.04 E-value=0.52 Score=45.89 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4458899999999999999998764
No 454
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.03 E-value=0.7 Score=51.54 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=58.1
Q ss_pred HHHHhc-cCCceEEEEEcCCCCcHHHHH-HHHHHHHhh----ccCCC-EEEEEEeCCCc-CHHHHHHHHHHHhCCC----
Q 037935 173 IQNALT-DVNVSIIGVYGMGGIGKTTLV-KEFARQARE----KKLFD-RVVFSEVSQTP-DIKKIQGEIAEKLGLE---- 240 (1085)
Q Consensus 173 l~~~l~-~~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~---- 240 (1085)
.++.+. =.+-..++|+|.+|+|||+|| ..+.+.... ..+-+ .++++-+.+.. .+.++.+++...=...
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 455554 233467899999999999995 466665542 11234 46777777654 4666777666522111
Q ss_pred ----CCCchHHH-----HHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 241 ----LSDEAEYR-----RASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 241 ----~~~~~~~~-----~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
.++..... ....+.++++ +++.+|+++||+..
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 11111111 1223334444 58999999999753
No 455
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.99 E-value=0.3 Score=50.28 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
..-.+++|+|+.|+||||+.+.+.....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3457999999999999999999887654
No 456
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.97 E-value=1.1 Score=58.89 Aligned_cols=84 Identities=21% Similarity=0.347 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCC-----chHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD-----EAEYRRASRLYER 256 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~ 256 (1085)
-+++.|+|.+|+||||||.++.......+ ..++|++....++... ++.++.+... ....+.+....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 46999999999999999999988776432 3588998888776542 5666654321 1112222222222
Q ss_pred H-HcCCcEEEEEeCCCC
Q 037935 257 L-KNENKILVILDNIWK 272 (1085)
Q Consensus 257 l-~~~~~~LlvlDdv~~ 272 (1085)
+ .+.+.-+||+|-+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 2 245667999998764
No 457
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.96 E-value=0.3 Score=51.31 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345799999999999999999998765
No 458
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.94 E-value=0.23 Score=51.52 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|..|+|||||.+.+.--.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44799999999999999999997644
No 459
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.93 E-value=0.23 Score=51.16 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|..|+|||||.+.+.--.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44699999999999999999997643
No 460
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.91 E-value=0.35 Score=50.29 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ 222 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 222 (1085)
++|+|.|-||+||||+|..+......++ . .++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G-~-~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG-K-TIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT-C-CEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC-C-cEEEEcCCC
Confidence 6788899999999999999998876432 2 456666643
No 461
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.83 E-value=0.24 Score=50.81 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|..|+|||||.+.++--.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999987643
No 462
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.83 E-value=0.3 Score=51.86 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 463
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.82 E-value=0.55 Score=53.17 Aligned_cols=46 Identities=9% Similarity=-0.053 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHHHHhh
Q 037935 163 FESRVSTLKSIQNALT--DVNVSIIGVYGMGGIGKTTLVKEFARQARE 208 (1085)
Q Consensus 163 ~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 208 (1085)
-+.|.+..+.+.+... ..+..+|.+.|+.|+||||+|+.+.+....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3455555666666552 335578999999999999999999999864
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.76 E-value=0.36 Score=49.00 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...+|+|+|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988654
No 465
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.74 E-value=0.24 Score=50.53 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
-.+++|+|..|+|||||.+.+.--.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999987643
No 466
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.72 E-value=0.38 Score=50.65 Aligned_cols=39 Identities=26% Similarity=0.442 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ 222 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 222 (1085)
.++|+|.|-||+||||+|..+......++ . .++-|+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G-~-rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG-K-KVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT-C-CEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEecCC
Confidence 47889999999999999999988776432 2 355666654
No 467
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.61 E-value=0.39 Score=47.51 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCC
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQ 222 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 222 (1085)
.|.+.|.||+||||+|..+......+ .++. ..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V-~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRV-MAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCCE-EEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCCE-EEEEeCC
Confidence 47788999999999999988877654 3443 3445543
No 468
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.44 E-value=1.2 Score=57.70 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=60.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHHhCCCCCC------chHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD------EAEYRRASRLYE 255 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~ 255 (1085)
-++|-|+|+.|+||||||.++......+ =..++|+.+....++.. ++.+|.+.+. +.....+.....
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 3799999999999999999998765543 25689999988888765 7788876432 222333444444
Q ss_pred HHHcCCcEEEEEeCCCC
Q 037935 256 RLKNENKILVILDNIWK 272 (1085)
Q Consensus 256 ~l~~~~~~LlvlDdv~~ 272 (1085)
.++++..-+||+|-|..
T Consensus 1504 ~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHcCCCCEEEEccHHh
Confidence 45567788999998853
No 469
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=87.43 E-value=0.78 Score=45.44 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=31.8
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHH
Q 037935 184 IIGVY-GMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKI 229 (1085)
Q Consensus 184 vi~I~-G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 229 (1085)
+|+|+ +-||+||||+|..+......++ .++-|+.....+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHH
Confidence 67776 6889999999999998887543 5777777665544433
No 470
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.38 E-value=0.26 Score=51.01 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.-.+++|+|..|+|||||.+.++--
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4469999999999999999998754
No 471
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.30 E-value=0.27 Score=51.22 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|..|+|||||.+.+.--.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999997643
No 472
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.26 E-value=0.26 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 181 NVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 181 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-.+++|+|..|+|||||.+.+.--.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999987643
No 473
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.20 E-value=0.82 Score=45.70 Aligned_cols=54 Identities=22% Similarity=0.227 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhc---cCCCEEEEEEeCCCcCHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREK---KLFDRVVFSEVSQTPDIKKIQGEIAEK 236 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~ 236 (1085)
-..|.|-|+.|+||||+++.+.+..... ..+..+ ...-+.....-+.+++++..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~-~~rep~~t~~g~~ir~~l~~ 81 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVV-VTREPGGTRLGETLREILLN 81 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEE-EEESSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeee-eecCCCCChHHHHHHHHHHc
Confidence 4689999999999999999999987653 035543 33333222233444555443
No 474
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.13 E-value=0.34 Score=45.86 Aligned_cols=24 Identities=21% Similarity=0.559 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.-.|+|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998864
No 475
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.11 E-value=0.32 Score=45.82 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 476
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.05 E-value=0.37 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 6899999999999999999998754
No 477
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=87.05 E-value=0.58 Score=52.12 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=56.6
Q ss_pred HHHHhc-cCCceEEEEEcCCCCcHHHHH-HHHHHHHhhccCCCE-EEEEEeCCCc-CHHHHHHHHHHHhCC--------C
Q 037935 173 IQNALT-DVNVSIIGVYGMGGIGKTTLV-KEFARQAREKKLFDR-VVFSEVSQTP-DIKKIQGEIAEKLGL--------E 240 (1085)
Q Consensus 173 l~~~l~-~~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~--------~ 240 (1085)
.++.+. =.+-..++|+|.+|+|||+|| ..+.+... -+. ++++-+.+.. .+.++.+++...=.. .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 455554 123467899999999999996 46666432 453 5677777654 466677766542211 1
Q ss_pred CCCchHHH-----HHHHHHHHHH-cCCcEEEEEeCCCC
Q 037935 241 LSDEAEYR-----RASRLYERLK-NENKILVILDNIWK 272 (1085)
Q Consensus 241 ~~~~~~~~-----~~~~~~~~l~-~~~~~LlvlDdv~~ 272 (1085)
.++..... ....+.++++ +++.+|+++||+..
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 11111111 1223334444 58999999999743
No 478
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.04 E-value=0.44 Score=52.49 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFAR 204 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~ 204 (1085)
....+++|+|..|+|||||.+.+..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3557999999999999999999987
No 479
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.03 E-value=0.67 Score=50.40 Aligned_cols=27 Identities=22% Similarity=0.062 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
....+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345799999999999999999999754
No 480
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.91 E-value=0.35 Score=47.07 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
-.|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999864
No 481
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.80 E-value=0.31 Score=51.01 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
-.++.|+|.+|+|||||+..+.....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 47999999999999999999887554
No 482
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.76 E-value=0.33 Score=46.78 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
-+.|.|.|..|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999997753
No 483
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=86.71 E-value=0.59 Score=52.04 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=56.8
Q ss_pred HHHHhc-cCCceEEEEEcCCCCcHHHHHH-HHHHHHhhccCCCE-EEEEEeCCCc-CHHHHHHHHHHHhCCCC-------
Q 037935 173 IQNALT-DVNVSIIGVYGMGGIGKTTLVK-EFARQAREKKLFDR-VVFSEVSQTP-DIKKIQGEIAEKLGLEL------- 241 (1085)
Q Consensus 173 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~-~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~------- 241 (1085)
.++.+. =.+-..++|+|.+|+|||+||. .+.+.. +-+. ++++-+.+.. .+.++.+++...-....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 455554 1334678999999999999964 666643 2453 5677777654 46667777665322211
Q ss_pred CCch-HHH-----HHHHHHHHHH-cCCcEEEEEeCCC
Q 037935 242 SDEA-EYR-----RASRLYERLK-NENKILVILDNIW 271 (1085)
Q Consensus 242 ~~~~-~~~-----~~~~~~~~l~-~~~~~LlvlDdv~ 271 (1085)
.+++ ... ....+-++++ +++.+|+++||+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1111 111 1123334444 5899999999974
No 484
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=86.71 E-value=0.28 Score=54.56 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEe
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEV 220 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 220 (1085)
.++|+|+|.+|+||||++..+......++ + .++.|+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G-~-kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG-L-KPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH-C-CEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEec
Confidence 46999999999999999999888765432 2 2444544
No 485
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.68 E-value=0.39 Score=45.22 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 037935 185 IGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 185 i~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
|+|+|.+|+|||||...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997653
No 486
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.62 E-value=1.9 Score=49.47 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=39.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhhccCCCEEEEEEeCCCcCHHHHHHHHHHH-hCCC
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAREKKLFDRVVFSEVSQTPDIKKIQGEIAEK-LGLE 240 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~ 240 (1085)
-.++.|.|.+|+||||+|.++..+...+.. ..++|++.. .+..++...++.. .+.+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~E--~s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAMLE--ESVEETAEDLIGLHNRVR 298 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEESS--SCHHHHHHHHHHHHTTSC
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEecc--CCHHHHHHHHHHHHcCCC
Confidence 368899999999999999999887764311 247777664 4566777766543 3443
No 487
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=86.61 E-value=0.2 Score=58.69 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=31.6
Q ss_pred cccchHHHHHHHHHHhccCCce-----------EEEEEcCCCCcHHHHHHHHHHHH
Q 037935 162 AFESRVSTLKSIQNALTDVNVS-----------IIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 162 ~~~gr~~~~~~l~~~l~~~~~~-----------vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.++|.+..++.+.-.+..+..+ -|.++|.+|+|||+||+.+++..
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 3567776655554444433211 58899999999999999998754
No 488
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.60 E-value=0.36 Score=50.04 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
.++|+|..|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998654
No 489
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.59 E-value=0.42 Score=46.31 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999763
No 490
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=86.57 E-value=1.2 Score=50.37 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 037935 166 RVSTLKSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQAREK 209 (1085)
Q Consensus 166 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 209 (1085)
....++.+...+.+++ +.+.|.|.+|+||||++..+.......
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 3344555555555433 489999999999999999999887654
No 491
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=86.38 E-value=0.42 Score=47.21 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=20.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 179 DVNVSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 179 ~~~~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
..+.-.|+|+|.+|+|||||...+...
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 344457789999999999999988864
No 492
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.32 E-value=0.39 Score=46.50 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.--|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999888764
No 493
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.29 E-value=0.4 Score=45.28 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 037935 184 IIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 184 vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
-|+|+|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 494
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.29 E-value=0.62 Score=45.09 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=25.9
Q ss_pred HHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 171 KSIQNALTDVNVSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 171 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.++.+ +.......|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33455678899999999999999998753
No 495
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.24 E-value=0.28 Score=51.66 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 180 VNVSIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 180 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
..-.+++|+|..|.|||||++.+..-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 345799999999999999999987643
No 496
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.24 E-value=0.4 Score=45.25 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQA 206 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~~ 206 (1085)
.-|+|+|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999988643
No 497
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.23 E-value=0.46 Score=48.42 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQAR 207 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 207 (1085)
...|+|.|..|+||||+++.+.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998763
No 498
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.19 E-value=0.38 Score=45.91 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999988753
No 499
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.11 E-value=0.34 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 037935 182 VSIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 182 ~~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
-.+++|+|..|+|||||.+.++--
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998754
No 500
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.07 E-value=0.41 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 037935 183 SIIGVYGMGGIGKTTLVKEFARQ 205 (1085)
Q Consensus 183 ~vi~I~G~~G~GKTtLa~~v~~~ 205 (1085)
-.|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998864
Done!