BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037937
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 2 DRVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQ-DANGREIEWALRALG 60
+ +R ++ VI++K+ C C +KTLF LG P + ELDQ G +++ L L
Sbjct: 10 ESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLT 69
Query: 61 CNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQMLIDARA 99
+VP VF+ G+++G D + L+ G L+ ML +A
Sbjct: 70 GQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANG 108
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%)
Query: 1 MDRVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALG 60
+ + ++LAS V+F+K+ C C+ +K L ++GAS + ELD+ ++G +++ AL
Sbjct: 10 LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT 69
Query: 61 CNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQMLIDARA 99
+VP VFIGG+ +G V+ H L +L DA A
Sbjct: 70 GRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 108
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%)
Query: 1 MDRVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALG 60
+ + ++LAS V+F+K+ C C+ +K L ++GAS + ELD+ ++G +++ AL
Sbjct: 11 LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT 70
Query: 61 CNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQMLIDARA 99
+VP VFIGG+ +G V+ H L +L DA A
Sbjct: 71 GRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 109
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 2 DRVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQ-DANGREIEWALRALG 60
D V+ ++ V+++K+ C +K+LF L P + ELD+ A G +I+ L L
Sbjct: 9 DAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLT 68
Query: 61 CNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQMLIDARA 99
+VP VFIGG+++G D + L+ G L+ +L +A A
Sbjct: 69 GQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANA 107
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 1 MDRVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALG 60
++++++ S VIF+K+SC C K LF+++ + + ELD G + + AL +
Sbjct: 25 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 84
Query: 61 CNPSVPAVFIGGRYVGSAKDVISLHVDGSL 90
+VP +F+ G ++G A D LH +G L
Sbjct: 85 GERTVPRIFVNGTFIGGATDTHRLHKEGKL 114
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 1 MDRVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALG 60
++++++ S VIF+K+SC C K LF+++ + + ELD G + + AL +
Sbjct: 39 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 98
Query: 61 CNPSVPAVFIGGRYVGSAKDVISLHVDGSL 90
+VP +F+ G ++G A D LH +G L
Sbjct: 99 GERTVPRIFVNGTFIGGATDTHRLHKEGKL 128
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 1 MDRVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALG 60
++++++ S VIF+K+SC C K LF+++ + + ELD G + + AL +
Sbjct: 17 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 76
Query: 61 CNPSVPAVFIGGRYVGSAKDVISLHVDGSL 90
+VP +F+ G ++G A D LH +G L
Sbjct: 77 GERTVPRIFVNGTFIGGATDTHRLHKEGKL 106
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 3 RVRDLASKKAAVIFTKSSCCMCH-SIKTLFYELGASPA---IHELDQDANGREIEWALRA 58
V+DL +K + K+ C C ++ TLF EL + + ELD+ +NG EI+ AL
Sbjct: 9 HVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEE 68
Query: 59 LGCNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQML 94
+ +VP V+I G+++G D+ +L +G L ++L
Sbjct: 69 ISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 104
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 3 RVRDLASKKAAVIFTKSSCCMCH-SIKTLFYELGASPA---IHELDQDANGREIEWALRA 58
V+DL +K + K+ C C ++ TLF EL + + ELD+ +NG EI+ AL
Sbjct: 29 HVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEE 88
Query: 59 LGCNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQML 94
+ +VP V+I G+++G D+ +L +G L ++L
Sbjct: 89 ISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 124
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 3 RVRDLASKKAAVIFTKSSCCMCH-SIKTLFYELGASPA---IHELDQDANGREIEWALRA 58
V+DL +K + K+ C ++ TLF EL + + ELD+ +NG EI+ AL
Sbjct: 12 HVKDLIGQKEVFVAAKTYCPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEE 71
Query: 59 LGCNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQML 94
+ +VP V+I G+++G D+ +L +G L ++L
Sbjct: 72 ISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 107
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 51/95 (53%)
Query: 4 VRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNP 63
+R A ++F+K++C C +K + E A ELDQ +NG I+ L +
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIE 70
Query: 64 SVPAVFIGGRYVGSAKDVISLHVDGSLKQMLIDAR 98
+VP +F+ G+++G ++ V+ + + L ++ +++
Sbjct: 71 TVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESK 105
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 51/95 (53%)
Query: 4 VRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNP 63
+R A ++F+K++C C +K + E A ELDQ +NG I+ L +
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIE 70
Query: 64 SVPAVFIGGRYVGSAKDVISLHVDGSLKQMLIDAR 98
+VP +F+ G+++G ++ V+ + + L ++ +++
Sbjct: 71 TVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESK 105
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 51/95 (53%)
Query: 4 VRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNP 63
+R A ++F+K++C C +K + E A ELDQ +NG I+ L +
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIE 70
Query: 64 SVPAVFIGGRYVGSAKDVISLHVDGSLKQMLIDAR 98
+VP +F+ G+++G ++ V+ + + L ++ +++
Sbjct: 71 TVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESK 105
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 7 LASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVP 66
L + VIF+KS C +K LF LG + ELDQ +G ++ L + +VP
Sbjct: 13 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP 72
Query: 67 AVFIGGRYVGSAKDVISLHVDGSLKQML-----IDARAIWF 102
+F+ +VG + G L+++L DA ++F
Sbjct: 73 NIFVNKVHVGGCDQTFQAYQSGLLQKLLQEDLAYDAENLYF 113
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully
Oxidized Form
Length = 82
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 15 IFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRY 74
I+TK +C CH K L G S EL D N + E ++ G +VP +FI ++
Sbjct: 5 IYTKETCPYCHRAKALLSSKGVS--FQELPIDGNAAKREEMIKRSG-RTTVPQIFIDAQH 61
Query: 75 VGSAKDVISLHVDGSLKQML 94
+G D+ +L G L +L
Sbjct: 62 IGGYDDLYALDARGGLDPLL 81
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 14 VIFTKSSCCMCHSIKTLF---YELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70
+IF+KS+C K L Y+ + I ELD+ +G E++ ++ + +VP + +
Sbjct: 17 IIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLV 76
Query: 71 GGRYVGSAKDVISLHVDGSLKQMLIDARAIW 101
G G +++ LH G L+++ +W
Sbjct: 77 NGVSRGGNEEIKKLHTQGK----LLESLQVW 103
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 1 MDRVRDLASKKAAVIFTKSSCCMCHS-IKTLFYELGASPA---IHELDQDANGREIEWAL 56
+ V+DL ++ + +K+ C CH+ + TLF +L + + +L+ G +I+ AL
Sbjct: 15 IKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAAL 74
Query: 57 RALGCNPSVPAVFIGGRYVGSAKDV 81
+ +VP ++I G+++G D+
Sbjct: 75 YEINGQRTVPNIYINGKHIGGNDDL 99
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 15 IFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRY 74
I+TK +C H K L G S EL D N + E ++ G +VP +FI ++
Sbjct: 5 IYTKETCPYSHRAKALLSSKGVS--FQELPIDGNAAKREEMIKRSG-RTTVPQIFIDAQH 61
Query: 75 VGSAKDVISLHVDGSLKQML 94
+G D+ +L G L +L
Sbjct: 62 IGGYDDLYALDARGGLDPLL 81
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 14 VIFTKSSCCMCHSIKTLFYELGASPAIHE---LDQDANGREIEWALRALGCNPSVPAVFI 70
V+F K +C C + L +L + E + ++ EI+ L+ L +VP VFI
Sbjct: 15 VVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI 74
Query: 71 GGRYVGSAKDVISLHVDGSLKQMLIDARAI 100
G +G D+ S+H G L L A+
Sbjct: 75 GKECIGGCTDLESMHKRGELLTRLQQVGAV 104
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 10 KKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVF 69
+++ IFTK C C K L ++ G S L DA ++RA+ +VP VF
Sbjct: 169 QESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDAT----IVSVRAVSGRTTVPQVF 224
Query: 70 IGGRYVGSAKDV 81
IGG+++G + D+
Sbjct: 225 IGGKHIGGSDDL 236
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 8 ASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPA 67
S K +++T+ +C C + L + G ++D + R+ E RA G N + P
Sbjct: 3 GSMKEIILYTRPNCPYCKRARDLLDKKGVK--YTDIDASTSLRQ-EMVQRANGRN-TFPQ 58
Query: 68 VFIGGRYVGSAKDVISLHVDGSLKQMLID 96
+FIG +VG D+ +L G L +L D
Sbjct: 59 IFIGDYHVGGCDDLYALENKGKLDSLLQD 87
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGR 73
+I+T+ C C K L GA +E+D A E+ ++ + P +FIG
Sbjct: 9 IIYTRPGCPYCARAKALLARKGAE--FNEIDASAT-PELRAEMQERSGRNTFPQIFIGSV 65
Query: 74 YVGSAKDVISLHVDGSLKQMLIDARAI 100
+VG D+ +L +G L +L + I
Sbjct: 66 HVGGCDDLYALEDEGKLDSLLKTGKLI 92
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 1 MDRVRDLASKKAAVIFTKSSCCMCHS-IKTLFYELGASPA---IHELDQDANGREIEWAL 56
+ V+DL ++ + +K+ C H+ + TLF +L + + +L+ G +I+ AL
Sbjct: 7 IKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAAL 66
Query: 57 RALGCNPSVPAVFIGGRYVGSAKDV 81
+ +VP ++I G+++G D+
Sbjct: 67 YEINGQRTVPNIYINGKHIGGNDDL 91
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHE---LDQDANGREIEWALRALGCNPSVPAVF 69
V+F K +C C + + +L + E + + EI+ L+ L +VP VF
Sbjct: 15 VVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVF 74
Query: 70 IGGRYVGSAKDVISLHVDGSL 90
IG +G D++SL G L
Sbjct: 75 IGKDCIGGCSDLVSLQQSGEL 95
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 1 MDRVRDLASKKAAVIFTKSSCCMCHS-IKTLFYELGASPA---IHELDQDANGREIEWAL 56
+ V+DL ++ + +K+ C H+ + TLF +L + + +L+ G +I+ AL
Sbjct: 251 IKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAAL 310
Query: 57 RALGCNPSVPAVFIGGRYVGSAKDV 81
+ +VP ++I G+++G D+
Sbjct: 311 YEINGQRTVPNIYINGKHIGGNDDL 335
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex
With Glutathione
Length = 105
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 14 VIFTKSSCCMCHSIKTLFYELGASPAIHE---LDQDANGREIEWALRALGCNPSVPAVFI 70
V+F K +C + + +L + E + + EI+ L+ L +VP VFI
Sbjct: 15 VVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFI 74
Query: 71 GGRYVGSAKDVISLHVDGSL 90
G +G + D++SL G L
Sbjct: 75 GKDSIGGSSDLVSLQQSGEL 94
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 51 EIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQML 94
E+ ++ P++P V++ G +VG ++ +H +G L + L
Sbjct: 63 ELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEEL 106
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 4 VRDLASKKAAVIFTKSS-----CCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRA 58
+ D V+F K + C + L G PA E+ ++
Sbjct: 9 IEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68
Query: 59 LGCNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQMLIDARAI 100
P++P +++ ++G + S+ G L +L +A+A+
Sbjct: 69 FSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQAL 110
>pdb|1TDI|A Chain A, Crystal Structure Of Hgsta3-3 In Complex With
Glutathione
pdb|1TDI|B Chain B, Crystal Structure Of Hgsta3-3 In Complex With
Glutathione
pdb|2VCV|A Chain A, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|B Chain B, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|C Chain C, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|D Chain D, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|E Chain E, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|F Chain F, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|G Chain G, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|H Chain H, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|I Chain I, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|J Chain J, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|K Chain K, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|L Chain L, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|M Chain M, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|N Chain N, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|O Chain O, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|P Chain P, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
Length = 222
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 34 LGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDGSL 90
+ P +H + I W L A G V +++GSA+D+ L DGSL
Sbjct: 1 MAGKPKLHYFNGRGRMEPIRWLLAAAG-------VEFEEKFIGSAEDLGKLRNDGSL 50
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 15 IFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRY 74
I+T S+C C L G E D + E S+P +FI ++
Sbjct: 20 IYTWSTCPFCMRALALLKRKGVE--FQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQH 77
Query: 75 VGSAKDVISLHVDGSLKQML 94
+G D+ +L G L +L
Sbjct: 78 IGGCDDIYALDGAGKLDPLL 97
>pdb|1H75|A Chain A, Structural Basis For The Thioredoxin-Like Activity
Profile Of The Glutaredoxin-Like Protein Nrdh-Redoxin
From Escherichia Coli
Length = 81
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIG 71
I+T++ C CH+ K G + +D+ E ALRA G +P V G
Sbjct: 4 TIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAE---ALRAQGFR-QLPVVIAG 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,860,664
Number of Sequences: 62578
Number of extensions: 104591
Number of successful extensions: 481
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 33
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)