Query 037937
Match_columns 102
No_of_seqs 173 out of 1081
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:53:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 100.0 1E-36 2.2E-41 181.4 11.7 99 4-102 1-99 (99)
2 PHA03050 glutaredoxin; Provisi 100.0 2.4E-35 5.2E-40 177.8 12.7 100 2-101 4-106 (108)
3 KOG1752 Glutaredoxin and relat 100.0 3E-34 6.6E-39 171.2 12.1 100 2-101 5-104 (104)
4 PRK10824 glutaredoxin-4; Provi 100.0 7.2E-34 1.6E-38 172.5 11.8 97 2-101 6-107 (115)
5 TIGR00365 monothiol glutaredox 100.0 1E-30 2.2E-35 155.1 11.1 90 2-94 3-97 (97)
6 cd03028 GRX_PICOT_like Glutare 100.0 9.4E-29 2E-33 144.8 10.0 85 4-91 1-90 (90)
7 PTZ00062 glutaredoxin; Provisi 99.9 7.1E-27 1.5E-31 154.3 11.4 92 2-96 104-200 (204)
8 PRK10638 glutaredoxin 3; Provi 99.9 6.5E-27 1.4E-31 135.0 9.8 82 11-95 2-83 (83)
9 TIGR02181 GRX_bact Glutaredoxi 99.9 1.6E-26 3.6E-31 132.0 9.1 79 13-94 1-79 (79)
10 TIGR02180 GRX_euk Glutaredoxin 99.9 3.9E-26 8.4E-31 131.2 10.0 82 13-94 1-84 (84)
11 COG0695 GrxC Glutaredoxin and 99.9 5.6E-26 1.2E-30 130.4 9.2 78 12-90 2-79 (80)
12 cd03419 GRX_GRXh_1_2_like Glut 99.9 1.5E-25 3.3E-30 128.3 9.4 81 12-92 1-81 (82)
13 COG0278 Glutaredoxin-related p 99.9 2.9E-25 6.3E-30 129.6 10.4 94 2-98 6-105 (105)
14 cd03031 GRX_GRX_like Glutaredo 99.9 1.9E-25 4.1E-30 140.9 9.8 83 12-97 1-93 (147)
15 cd03418 GRX_GRXb_1_3_like Glut 99.9 2E-24 4.3E-29 121.9 9.8 74 12-88 1-75 (75)
16 TIGR02190 GlrX-dom Glutaredoxi 99.9 3E-24 6.6E-29 122.8 8.7 76 6-85 3-78 (79)
17 cd03027 GRX_DEP Glutaredoxin ( 99.9 5.4E-24 1.2E-28 120.0 7.9 71 12-85 2-72 (73)
18 cd03029 GRX_hybridPRX5 Glutare 99.9 1.1E-23 2.4E-28 118.4 8.8 70 12-85 2-71 (72)
19 PRK12759 bifunctional gluaredo 99.9 2.5E-23 5.3E-28 149.6 10.2 88 11-100 2-94 (410)
20 TIGR02183 GRXA Glutaredoxin, G 99.9 1.6E-22 3.5E-27 117.4 8.5 73 13-88 2-81 (86)
21 PRK11200 grxA glutaredoxin 1; 99.9 1.7E-22 3.6E-27 116.9 8.5 73 12-87 2-81 (85)
22 cd02066 GRX_family Glutaredoxi 99.9 3.8E-21 8.2E-26 106.6 8.5 71 12-85 1-71 (72)
23 PF00462 Glutaredoxin: Glutare 99.8 1.1E-20 2.5E-25 102.6 6.7 60 13-75 1-60 (60)
24 KOG0911 Glutaredoxin-related p 99.8 3.6E-20 7.9E-25 122.2 10.1 92 3-97 131-227 (227)
25 cd03030 GRX_SH3BGR Glutaredoxi 99.8 3.3E-20 7.2E-25 108.8 8.2 80 13-95 2-91 (92)
26 PRK10329 glutaredoxin-like pro 99.8 1E-18 2.2E-23 100.4 7.3 64 12-79 2-65 (81)
27 TIGR02194 GlrX_NrdH Glutaredox 99.8 7.2E-19 1.6E-23 98.8 6.4 64 13-80 1-65 (72)
28 KOG2824 Glutaredoxin-related p 99.6 5.4E-16 1.2E-20 105.1 7.5 88 10-97 130-224 (281)
29 TIGR02196 GlrX_YruB Glutaredox 99.6 8.4E-16 1.8E-20 85.4 6.8 65 12-79 1-65 (74)
30 cd02976 NrdH NrdH-redoxin (Nrd 99.6 4.7E-15 1E-19 82.2 7.3 66 12-80 1-66 (73)
31 TIGR02200 GlrX_actino Glutared 99.6 1.1E-14 2.3E-19 81.9 6.8 65 12-79 1-67 (77)
32 cd02973 TRX_GRX_like Thioredox 99.5 4E-14 8.7E-19 78.0 6.2 58 12-76 2-64 (67)
33 PF04908 SH3BGR: SH3-binding, 99.5 2.5E-13 5.5E-18 80.5 8.3 81 12-95 2-97 (99)
34 cd00570 GST_N_family Glutathio 99.4 8.2E-12 1.8E-16 67.9 8.7 68 14-84 2-69 (71)
35 cd03041 GST_N_2GST_N GST_N fam 99.4 1.1E-11 2.3E-16 70.2 8.5 71 13-86 2-74 (77)
36 cd03037 GST_N_GRX2 GST_N famil 99.3 2.2E-11 4.7E-16 67.7 7.9 68 14-86 2-70 (71)
37 cd03040 GST_N_mPGES2 GST_N fam 99.3 2.5E-11 5.5E-16 68.4 7.8 69 12-86 1-73 (77)
38 cd03060 GST_N_Omega_like GST_N 99.2 1.9E-10 4E-15 64.0 9.0 67 14-84 2-69 (71)
39 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 7.3E-11 1.6E-15 68.8 7.3 68 2-76 5-77 (89)
40 cd03059 GST_N_SspA GST_N famil 99.2 3.9E-10 8.4E-15 62.7 9.1 70 13-86 1-70 (73)
41 TIGR00411 redox_disulf_1 small 99.2 2.5E-10 5.5E-15 64.6 7.9 57 12-73 2-62 (82)
42 cd03055 GST_N_Omega GST_N fami 99.2 6.6E-10 1.4E-14 64.5 9.4 71 10-84 16-87 (89)
43 cd03051 GST_N_GTT2_like GST_N 99.2 3.2E-10 7E-15 62.9 7.3 70 14-84 2-72 (74)
44 cd03045 GST_N_Delta_Epsilon GS 99.1 1.2E-09 2.6E-14 60.9 8.2 72 13-85 1-72 (74)
45 PF13417 GST_N_3: Glutathione 99.1 1.8E-09 3.8E-14 60.7 8.0 68 15-86 1-68 (75)
46 TIGR00412 redox_disulf_2 small 99.1 5.7E-10 1.2E-14 63.1 5.8 55 12-75 2-60 (76)
47 cd03036 ArsC_like Arsenate Red 99.1 4.9E-10 1.1E-14 67.7 5.8 45 13-57 1-46 (111)
48 cd02977 ArsC_family Arsenate R 99.0 7.9E-10 1.7E-14 66.0 6.2 45 13-57 1-46 (105)
49 cd03056 GST_N_4 GST_N family, 99.0 3.7E-09 8E-14 58.5 8.3 70 14-84 2-71 (73)
50 PHA02125 thioredoxin-like prot 99.0 1.5E-09 3.3E-14 61.1 6.6 55 13-75 2-56 (75)
51 TIGR01295 PedC_BrcD bacterioci 99.0 3.7E-09 8.1E-14 64.9 7.8 76 3-78 15-106 (122)
52 PRK01655 spxA transcriptional 99.0 2.4E-09 5.2E-14 66.5 6.1 45 13-57 2-47 (131)
53 TIGR01617 arsC_related transcr 98.9 2.4E-09 5.3E-14 65.2 4.9 46 13-58 1-47 (117)
54 PRK12559 transcriptional regul 98.9 1.2E-08 2.6E-13 63.4 6.7 45 13-57 2-47 (131)
55 PRK13344 spxA transcriptional 98.9 1E-08 2.2E-13 63.8 6.4 46 13-58 2-48 (132)
56 cd03032 ArsC_Spx Arsenate Redu 98.9 1.1E-08 2.4E-13 62.1 6.2 45 13-57 2-47 (115)
57 cd03054 GST_N_Metaxin GST_N fa 98.9 3.8E-08 8.2E-13 54.7 7.9 57 19-86 14-70 (72)
58 cd03053 GST_N_Phi GST_N family 98.8 6.1E-08 1.3E-12 54.2 8.7 73 13-86 2-74 (76)
59 cd03052 GST_N_GDAP1 GST_N fami 98.8 4.3E-08 9.4E-13 54.9 8.0 71 13-84 1-71 (73)
60 cd03035 ArsC_Yffb Arsenate Red 98.8 1.2E-08 2.5E-13 61.2 5.9 46 13-58 1-47 (105)
61 cd03061 GST_N_CLIC GST_N famil 98.8 4.7E-08 1E-12 57.2 8.2 64 19-86 20-83 (91)
62 cd03058 GST_N_Tau GST_N family 98.8 1.1E-07 2.4E-12 53.0 9.1 70 13-86 1-71 (74)
63 cd02975 PfPDO_like_N Pyrococcu 98.8 3E-08 6.4E-13 60.0 7.2 59 5-70 17-81 (113)
64 PF05768 DUF836: Glutaredoxin- 98.7 1.5E-07 3.3E-12 53.7 8.4 53 12-72 1-57 (81)
65 TIGR03140 AhpF alkyl hydropero 98.7 9.2E-09 2E-13 76.3 4.1 74 2-77 110-183 (515)
66 PRK15317 alkyl hydroperoxide r 98.7 1.1E-08 2.3E-13 75.9 4.2 68 2-76 109-181 (517)
67 cd03049 GST_N_3 GST_N family, 98.7 2E-07 4.4E-12 51.7 8.2 67 14-84 2-71 (73)
68 cd03033 ArsC_15kD Arsenate Red 98.7 6.9E-08 1.5E-12 58.6 6.5 46 12-57 1-47 (113)
69 cd03042 GST_N_Zeta GST_N famil 98.7 1.9E-07 4.2E-12 51.6 7.5 70 14-84 2-71 (73)
70 PF13409 GST_N_2: Glutathione 98.7 7.4E-08 1.6E-12 53.5 5.7 67 20-86 1-68 (70)
71 cd03076 GST_N_Pi GST_N family, 98.7 5E-07 1.1E-11 50.4 9.1 71 12-86 1-71 (73)
72 PF13192 Thioredoxin_3: Thiore 98.7 5.6E-08 1.2E-12 54.9 4.5 54 12-74 2-59 (76)
73 PHA02278 thioredoxin-like prot 98.6 4.4E-07 9.5E-12 54.2 8.3 69 4-75 7-85 (103)
74 cd03080 GST_N_Metaxin_like GST 98.6 6.3E-07 1.4E-11 50.2 8.2 63 13-86 2-71 (75)
75 KOG4023 Uncharacterized conser 98.6 1.1E-07 2.4E-12 55.8 4.8 86 11-96 2-98 (108)
76 TIGR02187 GlrX_arch Glutaredox 98.6 8.1E-08 1.7E-12 64.0 4.9 59 8-73 132-195 (215)
77 TIGR02182 GRXB Glutaredoxin, G 98.6 4.4E-07 9.6E-12 60.1 7.7 69 14-87 1-70 (209)
78 cd03038 GST_N_etherase_LigE GS 98.6 4.9E-07 1.1E-11 51.6 6.7 66 19-86 14-80 (84)
79 cd03039 GST_N_Sigma_like GST_N 98.6 8.4E-07 1.8E-11 49.1 7.4 69 14-85 2-70 (72)
80 COG1393 ArsC Arsenate reductas 98.5 4.7E-07 1E-11 55.3 6.7 47 12-58 2-49 (117)
81 TIGR03143 AhpF_homolog putativ 98.5 2.2E-07 4.8E-12 69.6 6.3 65 3-74 470-539 (555)
82 cd02954 DIM1 Dim1 family; Dim1 98.5 7.3E-07 1.6E-11 54.2 7.1 60 12-76 17-82 (114)
83 cd03048 GST_N_Ure2p_like GST_N 98.5 1.7E-06 3.8E-11 48.9 8.4 72 13-86 2-76 (81)
84 PRK10026 arsenate reductase; P 98.5 6.5E-07 1.4E-11 56.3 6.8 48 11-58 2-50 (141)
85 cd02953 DsbDgamma DsbD gamma f 98.5 1.2E-06 2.6E-11 51.7 7.6 66 4-70 4-78 (104)
86 PRK10387 glutaredoxin 2; Provi 98.5 1.1E-06 2.4E-11 57.7 7.9 70 13-87 1-71 (210)
87 cd03050 GST_N_Theta GST_N fami 98.5 2.8E-06 6.1E-11 47.5 8.3 72 13-85 1-72 (76)
88 TIGR01616 nitro_assoc nitrogen 98.5 7.9E-07 1.7E-11 54.9 6.6 46 12-57 2-48 (126)
89 PRK09481 sspA stringent starva 98.5 2.4E-06 5.3E-11 56.5 9.4 70 12-85 10-79 (211)
90 KOG3029 Glutathione S-transfer 98.5 9.6E-07 2.1E-11 61.0 7.4 69 11-85 89-157 (370)
91 PRK10853 putative reductase; P 98.5 6.3E-07 1.4E-11 54.8 5.9 46 13-58 2-48 (118)
92 TIGR00014 arsC arsenate reduct 98.5 7.1E-07 1.5E-11 54.2 6.0 46 13-58 1-47 (114)
93 cd03034 ArsC_ArsC Arsenate Red 98.5 7.8E-07 1.7E-11 53.8 6.0 46 13-58 1-47 (112)
94 TIGR02187 GlrX_arch Glutaredox 98.4 1.2E-06 2.7E-11 58.3 7.3 65 6-75 16-90 (215)
95 cd03044 GST_N_EF1Bgamma GST_N 98.4 2.7E-06 5.8E-11 47.6 7.6 70 14-85 2-72 (75)
96 cd02994 PDI_a_TMX PDIa family, 98.4 2.5E-06 5.5E-11 50.0 7.4 65 4-73 11-82 (101)
97 cd02985 TRX_CDSP32 TRX family, 98.4 2.6E-06 5.6E-11 50.5 7.4 62 12-75 18-84 (103)
98 cd02947 TRX_family TRX family; 98.4 2.7E-06 5.8E-11 47.9 6.8 57 12-75 13-76 (93)
99 cd02989 Phd_like_TxnDC9 Phosdu 98.4 3.8E-06 8.2E-11 50.8 7.8 70 4-78 15-91 (113)
100 cd01659 TRX_superfamily Thiore 98.4 1.4E-06 3E-11 45.3 5.0 56 13-72 1-61 (69)
101 cd03047 GST_N_2 GST_N family, 98.3 9E-06 1.9E-10 45.1 8.2 70 14-84 2-71 (73)
102 PRK09381 trxA thioredoxin; Pro 98.3 4.1E-06 9E-11 49.8 7.0 62 12-78 24-91 (109)
103 COG4545 Glutaredoxin-related p 98.3 2E-06 4.3E-11 48.2 5.0 69 13-82 4-82 (85)
104 cd03057 GST_N_Beta GST_N famil 98.3 8.8E-06 1.9E-10 45.5 7.6 70 14-85 2-72 (77)
105 cd02949 TRX_NTR TRX domain, no 98.3 3.4E-06 7.4E-11 49.3 5.9 60 13-77 17-82 (97)
106 cd02957 Phd_like Phosducin (Ph 98.3 2.5E-06 5.3E-11 51.4 5.2 65 13-83 28-97 (113)
107 PRK10996 thioredoxin 2; Provis 98.3 1E-05 2.2E-10 50.5 7.8 67 4-75 45-119 (139)
108 COG2999 GrxB Glutaredoxin 2 [P 98.2 2.2E-06 4.8E-11 55.7 4.6 69 14-87 2-71 (215)
109 KOG0910 Thioredoxin-like prote 98.2 2.4E-06 5.3E-11 54.0 4.7 58 13-75 65-128 (150)
110 cd02951 SoxW SoxW family; SoxW 98.2 6.5E-06 1.4E-10 50.2 6.2 70 3-72 5-93 (125)
111 KOG0406 Glutathione S-transfer 98.2 1.7E-05 3.6E-10 53.6 8.6 74 11-87 8-81 (231)
112 cd02996 PDI_a_ERp44 PDIa famil 98.2 1.1E-05 2.3E-10 48.0 6.6 65 4-73 11-89 (108)
113 PTZ00051 thioredoxin; Provisio 98.2 2.5E-05 5.4E-10 45.3 8.0 68 4-76 11-85 (98)
114 cd02959 ERp19 Endoplasmic reti 98.2 1.6E-05 3.4E-10 48.4 7.3 60 13-76 23-91 (117)
115 cd03043 GST_N_1 GST_N family, 98.2 3.5E-05 7.5E-10 42.9 8.2 65 18-84 7-71 (73)
116 PRK15113 glutathione S-transfe 98.2 2.9E-05 6.2E-10 51.5 9.1 74 11-85 4-79 (214)
117 TIGR00862 O-ClC intracellular 98.2 2E-05 4.3E-10 53.5 8.4 64 19-86 17-80 (236)
118 PF00085 Thioredoxin: Thioredo 98.2 2.3E-05 4.9E-10 45.5 7.6 60 12-76 20-85 (103)
119 cd02984 TRX_PICOT TRX domain, 98.2 1.1E-05 2.5E-10 46.7 6.2 58 13-75 18-81 (97)
120 COG3118 Thioredoxin domain-con 98.2 4.6E-06 9.9E-11 58.0 5.1 61 12-79 46-114 (304)
121 cd03046 GST_N_GTT1_like GST_N 98.1 3.4E-05 7.3E-10 42.8 7.7 71 14-86 2-72 (76)
122 PF13098 Thioredoxin_2: Thiore 98.1 1.2E-05 2.6E-10 47.8 6.2 72 10-81 6-105 (112)
123 cd02965 HyaE HyaE family; HyaE 98.1 1.3E-05 2.9E-10 48.5 6.3 64 10-78 28-99 (111)
124 cd02956 ybbN ybbN protein fami 98.1 2.9E-05 6.2E-10 45.0 7.4 59 12-75 15-79 (96)
125 cd02952 TRP14_like Human TRX-r 98.1 7.4E-06 1.6E-10 50.1 5.1 58 13-70 25-96 (119)
126 cd02999 PDI_a_ERp44_like PDIa 98.1 9.2E-06 2E-10 48.0 5.3 54 12-69 21-77 (100)
127 cd02961 PDI_a_family Protein D 98.1 3.5E-05 7.6E-10 44.1 7.5 61 4-69 8-76 (101)
128 cd02993 PDI_a_APS_reductase PD 98.1 2.9E-05 6.2E-10 46.3 7.2 57 10-69 22-83 (109)
129 cd02987 Phd_like_Phd Phosducin 98.1 6.4E-06 1.4E-10 53.5 4.5 80 13-98 87-175 (175)
130 cd02948 TRX_NDPK TRX domain, T 98.1 3.5E-05 7.6E-10 45.5 7.3 65 5-75 11-84 (102)
131 TIGR01068 thioredoxin thioredo 98.1 4.5E-05 9.7E-10 44.0 7.7 60 11-75 16-81 (101)
132 cd02963 TRX_DnaJ TRX domain, D 98.1 2E-05 4.3E-10 47.3 6.2 57 12-75 27-92 (111)
133 PLN02378 glutathione S-transfe 98.0 4.7E-05 1E-09 50.5 8.2 64 19-86 18-81 (213)
134 TIGR01262 maiA maleylacetoacet 98.0 2.1E-05 4.6E-10 51.6 6.5 72 15-86 2-73 (210)
135 PF03960 ArsC: ArsC family; I 98.0 1.3E-05 2.8E-10 48.2 5.0 45 16-60 1-46 (110)
136 cd02962 TMX2 TMX2 family; comp 98.0 3.1E-05 6.6E-10 49.3 6.9 64 13-77 51-123 (152)
137 PRK10877 protein disulfide iso 98.0 2.6E-05 5.6E-10 52.8 6.9 24 11-34 109-132 (232)
138 cd03006 PDI_a_EFP1_N PDIa fami 98.0 1.3E-05 2.9E-10 48.5 4.8 58 12-73 32-95 (113)
139 cd03003 PDI_a_ERdj5_N PDIa fam 98.0 4.1E-05 8.9E-10 44.8 6.7 65 5-74 12-84 (101)
140 PLN02473 glutathione S-transfe 98.0 6.8E-05 1.5E-09 49.4 8.4 73 12-85 2-74 (214)
141 cd03002 PDI_a_MPD1_like PDI fa 98.0 3.3E-05 7.2E-10 45.6 6.2 56 12-70 21-80 (109)
142 TIGR01126 pdi_dom protein disu 98.0 1.4E-05 3.1E-10 46.4 4.5 53 12-69 16-74 (102)
143 PLN02817 glutathione dehydroge 98.0 7.3E-05 1.6E-09 51.5 8.3 63 19-85 71-133 (265)
144 cd03004 PDI_a_ERdj5_C PDIa fam 98.0 2.3E-05 5.1E-10 46.0 5.2 56 12-72 22-83 (104)
145 cd02998 PDI_a_ERp38 PDIa famil 98.0 4.5E-05 9.8E-10 44.4 6.3 55 12-70 21-81 (105)
146 cd03000 PDI_a_TMX3 PDIa family 97.9 4.3E-05 9.3E-10 45.1 5.9 53 12-69 18-77 (104)
147 cd02955 SSP411 TRX domain, SSP 97.9 4.4E-05 9.5E-10 47.0 6.0 72 4-75 8-94 (124)
148 cd02950 TxlA TRX-like protein 97.9 6.7E-05 1.5E-09 47.1 6.9 66 5-75 14-90 (142)
149 PF13728 TraF: F plasmid trans 97.9 3.7E-05 8.1E-10 51.5 6.0 68 3-70 114-189 (215)
150 TIGR02740 TraF-like TraF-like 97.9 6.4E-05 1.4E-09 52.0 7.1 67 4-70 161-235 (271)
151 cd03001 PDI_a_P5 PDIa family, 97.9 9.4E-05 2E-09 43.1 6.6 53 12-69 21-77 (103)
152 KOG0907 Thioredoxin [Posttrans 97.9 5E-05 1.1E-09 45.6 5.4 57 13-74 25-86 (106)
153 PF06764 DUF1223: Protein of u 97.9 3.1E-05 6.8E-10 51.4 4.7 67 13-79 2-86 (202)
154 cd02997 PDI_a_PDIR PDIa family 97.8 3.2E-05 6.9E-10 45.1 4.2 60 12-75 20-88 (104)
155 PRK13728 conjugal transfer pro 97.8 0.00011 2.4E-09 48.1 6.7 35 12-46 72-110 (181)
156 cd03005 PDI_a_ERp46 PDIa famil 97.8 8.9E-05 1.9E-09 43.1 5.8 59 12-75 19-86 (102)
157 PF14595 Thioredoxin_9: Thiore 97.8 5.7E-06 1.2E-10 51.3 0.2 64 3-70 35-103 (129)
158 COG0625 Gst Glutathione S-tran 97.8 0.00016 3.4E-09 47.7 7.1 71 14-86 2-73 (211)
159 cd02986 DLP Dim1 family, Dim1- 97.8 0.00012 2.7E-09 44.4 6.0 56 13-75 18-81 (114)
160 cd03077 GST_N_Alpha GST_N fami 97.8 0.00032 6.9E-09 39.6 7.3 69 13-85 2-72 (79)
161 cd02988 Phd_like_VIAF Phosduci 97.7 5.6E-05 1.2E-09 49.8 4.5 78 13-98 106-192 (192)
162 KOG1422 Intracellular Cl- chan 97.7 0.00037 7.9E-09 46.4 7.7 63 19-85 19-81 (221)
163 cd03020 DsbA_DsbC_DsbG DsbA fa 97.7 0.00039 8.4E-09 45.6 7.8 24 10-33 78-101 (197)
164 TIGR02738 TrbB type-F conjugat 97.6 0.00032 7E-09 44.6 6.8 39 8-46 49-91 (153)
165 cd03008 TryX_like_RdCVF Trypar 97.6 0.00073 1.6E-08 42.8 8.3 22 12-33 28-49 (146)
166 PTZ00443 Thioredoxin domain-co 97.6 0.00031 6.7E-09 47.4 6.8 60 11-75 54-119 (224)
167 PRK10357 putative glutathione 97.6 0.00046 9.9E-09 45.1 7.5 68 14-85 2-70 (202)
168 cd02992 PDI_a_QSOX PDIa family 97.6 9.3E-05 2E-09 44.7 3.8 56 12-70 22-84 (114)
169 cd03009 TryX_like_TryX_NRX Try 97.6 0.00083 1.8E-08 41.0 7.9 21 12-32 21-41 (131)
170 PRK13703 conjugal pilus assemb 97.6 0.00028 6E-09 48.3 6.2 68 3-70 137-212 (248)
171 PTZ00062 glutaredoxin; Provisi 97.6 0.00033 7.3E-09 46.6 6.4 64 3-79 8-79 (204)
172 TIGR02739 TraF type-F conjugat 97.6 0.00028 6E-09 48.5 6.2 68 3-70 144-219 (256)
173 cd03065 PDI_b_Calsequestrin_N 97.6 0.00061 1.3E-08 41.7 7.0 58 12-76 29-101 (120)
174 PLN02395 glutathione S-transfe 97.6 0.00081 1.8E-08 44.2 8.2 73 12-86 2-74 (215)
175 PLN00410 U5 snRNP protein, DIM 97.6 0.00041 8.9E-09 43.7 6.3 54 13-73 27-89 (142)
176 cd02972 DsbA_family DsbA famil 97.6 0.00049 1.1E-08 39.0 6.1 60 13-72 1-91 (98)
177 PF13899 Thioredoxin_7: Thiore 97.6 0.00027 5.8E-09 40.1 4.9 52 13-70 21-79 (82)
178 KOG0868 Glutathione S-transfer 97.5 0.00051 1.1E-08 44.9 6.0 70 16-87 11-80 (217)
179 cd02995 PDI_a_PDI_a'_C PDIa fa 97.5 0.00017 3.6E-09 42.0 3.5 53 12-70 21-79 (104)
180 cd02964 TryX_like_family Trypa 97.5 0.00098 2.1E-08 40.9 7.0 21 12-32 20-40 (132)
181 cd03010 TlpA_like_DsbE TlpA-li 97.5 0.00085 1.8E-08 40.7 6.7 33 12-44 28-62 (127)
182 cd03078 GST_N_Metaxin1_like GS 97.4 0.0014 3E-08 36.6 6.9 57 19-86 14-70 (73)
183 PRK13972 GSH-dependent disulfi 97.4 0.0017 3.6E-08 42.9 8.3 71 13-85 2-79 (215)
184 TIGR00424 APS_reduc 5'-adenyly 97.3 0.00073 1.6E-08 50.0 6.1 57 12-73 374-439 (463)
185 TIGR01130 ER_PDI_fam protein d 97.3 0.0017 3.7E-08 47.0 7.7 66 4-74 11-87 (462)
186 PF02798 GST_N: Glutathione S- 97.3 0.0063 1.4E-07 33.9 8.2 71 12-85 2-74 (76)
187 PRK11752 putative S-transferas 97.3 0.0034 7.4E-08 43.1 8.4 75 9-85 41-125 (264)
188 cd03007 PDI_a_ERp29_N PDIa fam 97.2 0.0076 1.7E-07 36.7 9.0 68 4-73 11-91 (116)
189 cd03011 TlpA_like_ScsD_MtbDsbE 97.2 0.00081 1.8E-08 40.4 4.7 34 10-43 21-54 (123)
190 cd03075 GST_N_Mu GST_N family, 97.2 0.0078 1.7E-07 34.1 8.3 71 15-85 3-78 (82)
191 cd03079 GST_N_Metaxin2 GST_N f 97.2 0.006 1.3E-07 34.3 7.6 58 19-86 15-72 (74)
192 PTZ00102 disulphide isomerase; 97.2 0.0025 5.5E-08 46.7 7.7 64 5-73 43-117 (477)
193 PLN02309 5'-adenylylsulfate re 97.2 0.0019 4.2E-08 47.8 6.9 58 12-72 368-432 (457)
194 PF13905 Thioredoxin_8: Thiore 97.2 0.0017 3.8E-08 37.3 5.5 48 12-59 4-57 (95)
195 KOG0190 Protein disulfide isom 97.1 0.0016 3.4E-08 48.5 6.1 66 4-74 35-111 (493)
196 PRK15412 thiol:disulfide inter 97.1 0.0029 6.4E-08 41.1 6.8 34 12-45 71-105 (185)
197 PRK00293 dipZ thiol:disulfide 97.1 0.005 1.1E-07 46.8 8.2 60 13-74 478-547 (571)
198 TIGR02661 MauD methylamine deh 97.0 0.0045 9.8E-08 40.5 7.0 21 12-32 77-97 (189)
199 PF07315 DUF1462: Protein of u 97.0 0.0041 8.9E-08 36.1 5.8 65 14-78 1-81 (93)
200 PRK03147 thiol-disulfide oxido 97.0 0.0028 6.2E-08 40.2 5.8 65 11-75 63-152 (173)
201 TIGR00385 dsbE periplasmic pro 97.0 0.0045 9.8E-08 39.8 6.7 23 12-34 66-88 (173)
202 PRK10542 glutathionine S-trans 96.9 0.005 1.1E-07 40.0 6.7 71 14-85 2-73 (201)
203 cd02966 TlpA_like_family TlpA- 96.9 0.0038 8.2E-08 36.1 5.5 48 9-56 19-72 (116)
204 COG5494 Predicted thioredoxin/ 96.9 0.0045 9.8E-08 41.5 6.0 61 10-75 10-70 (265)
205 cd02960 AGR Anterior Gradient 96.9 0.0035 7.5E-08 39.0 5.2 19 13-31 27-45 (130)
206 KOG4244 Failed axon connection 96.9 0.0022 4.8E-08 44.2 4.7 53 20-83 60-112 (281)
207 KOG3425 Uncharacterized conser 96.9 0.0017 3.7E-08 39.7 3.5 52 19-70 43-101 (128)
208 cd02967 mauD Methylamine utili 96.8 0.0034 7.4E-08 37.1 4.8 57 11-69 23-83 (114)
209 PTZ00102 disulphide isomerase; 96.8 0.0019 4.1E-08 47.3 4.4 23 12-34 378-400 (477)
210 COG4837 Uncharacterized protei 96.8 0.0032 6.8E-08 36.9 4.3 71 8-78 2-88 (106)
211 COG3019 Predicted metal-bindin 96.8 0.016 3.4E-07 36.4 7.6 77 9-88 24-103 (149)
212 PTZ00057 glutathione s-transfe 96.8 0.023 4.9E-07 37.4 8.8 72 12-85 4-79 (205)
213 COG5429 Uncharacterized secret 96.8 0.0017 3.7E-08 44.0 3.3 61 13-73 45-122 (261)
214 KOG2501 Thioredoxin, nucleored 96.7 0.0053 1.1E-07 39.3 5.2 44 15-58 39-89 (157)
215 PRK11657 dsbG disulfide isomer 96.7 0.0018 4E-08 44.3 3.3 23 11-33 119-141 (251)
216 cd02982 PDI_b'_family Protein 96.7 0.0091 2E-07 34.6 5.8 56 10-70 13-74 (103)
217 cd03012 TlpA_like_DipZ_like Tl 96.5 0.029 6.2E-07 34.0 7.4 23 12-34 26-48 (126)
218 cd02958 UAS UAS family; UAS is 96.5 0.031 6.7E-07 33.3 7.4 53 13-69 21-81 (114)
219 KOG0867 Glutathione S-transfer 96.4 0.026 5.7E-07 37.9 7.5 74 12-86 2-75 (226)
220 KOG0908 Thioredoxin-like prote 96.3 0.01 2.2E-07 40.8 5.0 57 12-75 24-87 (288)
221 PF08534 Redoxin: Redoxin; In 96.3 0.038 8.2E-07 34.1 7.2 22 12-33 31-53 (146)
222 KOG4277 Uncharacterized conser 96.2 0.0056 1.2E-07 43.3 3.0 60 13-74 47-111 (468)
223 PF06110 DUF953: Eukaryotic pr 96.1 0.0016 3.6E-08 39.8 0.1 52 19-70 36-95 (119)
224 PRK14018 trifunctional thiored 96.0 0.016 3.5E-07 43.7 5.1 22 13-34 60-81 (521)
225 smart00594 UAS UAS domain. 96.0 0.078 1.7E-06 32.2 7.4 55 12-70 30-92 (122)
226 COG2143 Thioredoxin-related pr 96.0 0.024 5.1E-07 36.5 5.1 19 13-31 46-64 (182)
227 PHA03075 glutaredoxin-like pro 96.0 0.014 3.1E-07 35.5 3.9 34 11-44 3-36 (123)
228 cd05295 MDH_like Malate dehydr 95.8 0.036 7.9E-07 41.1 6.1 69 18-86 1-82 (452)
229 PF06953 ArsD: Arsenical resis 95.8 0.05 1.1E-06 33.5 5.7 58 26-84 31-94 (123)
230 KOG0190 Protein disulfide isom 95.8 0.0056 1.2E-07 45.7 1.8 27 12-38 387-413 (493)
231 cd03023 DsbA_Com1_like DsbA fa 95.8 0.011 2.3E-07 36.4 2.9 24 10-33 6-29 (154)
232 PF10568 Tom37: Outer mitochon 95.8 0.096 2.1E-06 29.2 6.4 55 20-85 13-71 (72)
233 TIGR01626 ytfJ_HI0045 conserve 95.7 0.07 1.5E-06 35.1 6.5 40 7-46 57-105 (184)
234 PLN02412 probable glutathione 95.6 0.1 2.3E-06 33.3 7.1 20 12-31 32-51 (167)
235 TIGR01130 ER_PDI_fam protein d 95.5 0.045 9.7E-07 39.7 5.7 23 12-34 367-389 (462)
236 KOG0912 Thiol-disulfide isomer 95.4 0.058 1.2E-06 38.3 5.6 67 4-75 6-85 (375)
237 PTZ00056 glutathione peroxidas 95.4 0.085 1.9E-06 34.8 6.2 21 12-32 42-62 (199)
238 cd00340 GSH_Peroxidase Glutath 95.3 0.067 1.5E-06 33.5 5.4 21 12-33 25-45 (152)
239 KOG1695 Glutathione S-transfer 95.3 0.23 4.9E-06 33.3 8.0 71 11-85 2-72 (206)
240 PLN02919 haloacid dehalogenase 95.3 0.094 2E-06 42.7 7.2 23 12-34 423-445 (1057)
241 COG3634 AhpF Alkyl hydroperoxi 95.1 0.047 1E-06 39.7 4.6 72 2-78 109-183 (520)
242 cd02968 SCO SCO (an acronym fo 95.1 0.16 3.6E-06 30.9 6.5 23 10-32 23-46 (142)
243 PF03190 Thioredox_DsbH: Prote 95.0 0.048 1E-06 35.2 3.9 63 13-75 41-116 (163)
244 PTZ00256 glutathione peroxidas 94.8 0.14 3.1E-06 33.2 6.0 19 14-32 46-64 (183)
245 cd02969 PRX_like1 Peroxiredoxi 94.8 0.24 5.2E-06 31.5 6.9 22 11-32 27-48 (171)
246 KOG0191 Thioredoxin/protein di 94.8 0.057 1.2E-06 39.0 4.4 57 9-70 47-107 (383)
247 cd03019 DsbA_DsbA DsbA family, 94.8 0.035 7.6E-07 35.2 2.9 25 9-33 15-39 (178)
248 PLN02399 phospholipid hydroper 94.7 0.2 4.3E-06 34.2 6.5 22 10-31 100-121 (236)
249 COG4232 Thiol:disulfide interc 94.6 0.076 1.7E-06 40.4 4.8 91 3-97 464-567 (569)
250 PF00578 AhpC-TSA: AhpC/TSA fa 94.4 0.32 7E-06 28.8 6.6 63 5-70 21-89 (124)
251 PF13462 Thioredoxin_4: Thiore 94.4 0.044 9.6E-07 34.1 2.7 22 10-31 13-34 (162)
252 cd02970 PRX_like2 Peroxiredoxi 94.3 0.17 3.7E-06 31.0 5.3 22 12-33 26-48 (149)
253 PF04134 DUF393: Protein of un 94.3 0.15 3.2E-06 30.3 4.8 71 15-87 1-76 (114)
254 PF02114 Phosducin: Phosducin; 94.1 0.088 1.9E-06 36.5 4.0 82 13-100 150-240 (265)
255 COG0526 TrxA Thiol-disulfide i 94.0 0.048 1E-06 30.9 2.2 20 16-35 39-58 (127)
256 cd03015 PRX_Typ2cys Peroxiredo 93.8 0.25 5.4E-06 31.6 5.4 22 11-32 30-53 (173)
257 TIGR03137 AhpC peroxiredoxin. 93.4 0.29 6.3E-06 31.9 5.3 20 12-31 33-54 (187)
258 KOG4420 Uncharacterized conser 93.1 0.092 2E-06 36.5 2.6 75 12-87 26-100 (325)
259 TIGR02540 gpx7 putative glutat 92.9 0.14 3E-06 32.1 3.1 19 13-31 26-44 (153)
260 cd03023 DsbA_Com1_like DsbA fa 92.5 0.18 3.9E-06 30.9 3.2 26 59-84 124-149 (154)
261 PRK13190 putative peroxiredoxi 92.2 0.35 7.5E-06 32.0 4.5 16 16-31 35-50 (202)
262 TIGR03143 AhpF_homolog putativ 92.0 0.49 1.1E-05 35.9 5.5 58 6-70 363-425 (555)
263 PF13462 Thioredoxin_4: Thiore 91.9 0.2 4.3E-06 31.1 2.9 25 59-83 131-155 (162)
264 cd03022 DsbA_HCCA_Iso DsbA fam 91.7 0.53 1.1E-05 30.1 4.8 26 59-84 162-187 (192)
265 TIGR03759 conj_TIGR03759 integ 91.6 0.89 1.9E-05 30.3 5.7 45 9-53 108-152 (200)
266 KOG0191 Thioredoxin/protein di 91.4 0.51 1.1E-05 34.1 4.9 26 9-34 162-187 (383)
267 cd03016 PRX_1cys Peroxiredoxin 91.3 0.49 1.1E-05 31.2 4.4 30 15-44 32-68 (203)
268 KOG1731 FAD-dependent sulfhydr 91.2 0.097 2.1E-06 39.9 1.0 59 12-70 60-122 (606)
269 COG0041 PurE Phosphoribosylcar 90.8 1.6 3.5E-05 28.0 6.0 72 13-84 7-102 (162)
270 cd03017 PRX_BCP Peroxiredoxin 90.6 0.69 1.5E-05 28.0 4.4 19 13-31 27-46 (140)
271 cd03014 PRX_Atyp2cys Peroxired 90.5 0.94 2E-05 27.7 4.9 28 6-33 23-51 (143)
272 PRK10954 periplasmic protein d 90.3 0.32 7E-06 32.1 2.8 22 59-80 162-183 (207)
273 PF10865 DUF2703: Domain of un 90.1 1.2 2.6E-05 27.3 5.0 48 20-75 14-72 (120)
274 cd03018 PRX_AhpE_like Peroxire 90.0 0.53 1.1E-05 28.9 3.5 20 13-32 32-52 (149)
275 PRK15000 peroxidase; Provision 89.7 1.4 3.1E-05 29.0 5.5 22 10-31 34-57 (200)
276 PRK13189 peroxiredoxin; Provis 89.6 0.96 2.1E-05 30.4 4.7 12 16-27 43-54 (222)
277 cd02971 PRX_family Peroxiredox 89.3 0.57 1.2E-05 28.4 3.2 21 12-32 25-46 (140)
278 cd03019 DsbA_DsbA DsbA family, 89.1 0.55 1.2E-05 29.6 3.2 22 59-80 138-159 (178)
279 PRK13599 putative peroxiredoxi 88.9 1.1 2.3E-05 30.1 4.5 13 15-27 35-47 (215)
280 PF01323 DSBA: DSBA-like thior 88.9 0.49 1.1E-05 30.3 2.8 34 12-45 1-39 (193)
281 PRK10382 alkyl hydroperoxide r 88.3 1.4 3.1E-05 28.9 4.7 17 13-29 35-52 (187)
282 PRK00522 tpx lipid hydroperoxi 88.3 1.9 4E-05 27.5 5.2 35 12-46 47-85 (167)
283 PRK10606 btuE putative glutath 88.0 3 6.5E-05 27.3 6.1 65 9-74 25-103 (183)
284 PRK09437 bcp thioredoxin-depen 87.5 4.7 0.0001 24.9 6.6 16 13-28 34-50 (154)
285 PRK13191 putative peroxiredoxi 87.4 1.6 3.4E-05 29.2 4.6 17 15-31 40-56 (215)
286 KOG3171 Conserved phosducin-li 87.1 4.4 9.5E-05 27.7 6.4 81 14-100 164-253 (273)
287 COG3340 PepE Peptidase E [Amin 86.9 3.6 7.8E-05 27.9 6.0 73 19-101 46-121 (224)
288 COG2761 FrnE Predicted dithiol 85.7 1.7 3.6E-05 29.6 4.0 23 11-33 6-28 (225)
289 PF09413 DUF2007: Domain of un 85.6 1 2.2E-05 24.2 2.4 53 13-73 1-53 (67)
290 TIGR01162 purE phosphoribosyla 85.5 3.5 7.6E-05 26.5 5.2 74 13-86 3-100 (156)
291 PRK11509 hydrogenase-1 operon 85.1 5.8 0.00012 24.7 5.9 54 20-78 47-107 (132)
292 PTZ00253 tryparedoxin peroxida 85.0 3.3 7.2E-05 27.1 5.2 32 13-44 40-79 (199)
293 KOG0913 Thiol-disulfide isomer 84.3 0.33 7.2E-06 33.2 0.2 62 6-74 36-106 (248)
294 PRK10954 periplasmic protein d 84.2 0.76 1.7E-05 30.3 1.9 20 10-29 38-57 (207)
295 PF11009 DUF2847: Protein of u 84.2 6.9 0.00015 23.4 7.2 63 10-75 19-91 (105)
296 PF15643 Tox-PL-2: Papain fold 83.8 3.9 8.5E-05 24.2 4.5 27 20-46 20-47 (100)
297 PF03227 GILT: Gamma interfero 83.1 1.2 2.5E-05 26.6 2.2 16 12-27 2-17 (108)
298 PTZ00137 2-Cys peroxiredoxin; 82.6 5.9 0.00013 27.5 5.7 22 6-27 94-117 (261)
299 KOG0914 Thioredoxin-like prote 82.2 2.1 4.6E-05 29.2 3.3 62 13-75 148-218 (265)
300 PF04566 RNA_pol_Rpb2_4: RNA p 82.1 1.1 2.4E-05 24.3 1.6 18 68-85 1-18 (63)
301 KOG1672 ATP binding protein [P 81.1 12 0.00025 25.2 6.4 91 5-100 79-180 (211)
302 PF11287 DUF3088: Protein of u 80.9 2.5 5.5E-05 25.6 3.0 52 20-73 23-77 (112)
303 COG1651 DsbG Protein-disulfide 80.5 2.4 5.1E-05 28.5 3.2 22 60-81 211-232 (244)
304 cd03025 DsbA_FrnE_like DsbA fa 80.1 1.4 3.1E-05 28.2 1.9 21 12-32 2-22 (193)
305 PF03575 Peptidase_S51: Peptid 79.9 6.5 0.00014 24.6 4.9 64 23-96 1-64 (154)
306 KOG2454 Betaine aldehyde dehyd 79.6 5.1 0.00011 29.8 4.7 65 6-75 212-282 (583)
307 PF01323 DSBA: DSBA-like thior 79.0 2.9 6.3E-05 26.6 3.1 58 27-84 126-188 (193)
308 TIGR03865 PQQ_CXXCW PQQ-depend 78.2 4.3 9.4E-05 25.9 3.7 29 9-37 115-143 (162)
309 cd06387 PBP1_iGluR_AMPA_GluR3 77.7 11 0.00025 27.2 6.1 83 3-85 55-147 (372)
310 cd03021 DsbA_GSTK DsbA family, 77.7 5.4 0.00012 26.2 4.2 31 12-42 2-36 (209)
311 cd03024 DsbA_FrnE DsbA family, 76.1 4.5 9.8E-05 26.0 3.5 19 13-31 1-19 (201)
312 cd03013 PRX5_like Peroxiredoxi 76.1 6.7 0.00014 24.7 4.1 19 9-27 28-48 (155)
313 COG1331 Highly conserved prote 75.3 15 0.00032 29.0 6.4 50 16-68 50-112 (667)
314 cd02974 AhpF_NTD_N Alkyl hydro 75.1 5.9 0.00013 23.1 3.4 29 6-35 16-44 (94)
315 COG3011 Predicted thiol-disulf 74.7 12 0.00026 23.5 4.9 35 9-43 6-42 (137)
316 cd06388 PBP1_iGluR_AMPA_GluR4 74.1 22 0.00048 25.6 6.8 82 3-85 55-147 (371)
317 cd03024 DsbA_FrnE DsbA family, 74.1 11 0.00023 24.3 4.8 23 60-82 171-194 (201)
318 cd03022 DsbA_HCCA_Iso DsbA fam 73.5 3.5 7.6E-05 26.3 2.4 29 13-41 1-33 (192)
319 TIGR03190 benz_CoA_bzdN benzoy 73.2 12 0.00025 27.2 5.2 47 27-77 305-356 (377)
320 cd04911 ACT_AKiii-YclM-BS_1 AC 72.5 5.4 0.00012 22.4 2.7 23 20-42 14-36 (76)
321 TIGR00385 dsbE periplasmic pro 72.3 22 0.00048 22.6 6.1 55 13-74 93-150 (173)
322 COG1651 DsbG Protein-disulfide 72.2 5.3 0.00011 26.7 3.1 20 12-31 87-106 (244)
323 cd03146 GAT1_Peptidase_E Type 72.0 18 0.0004 23.9 5.6 63 22-96 46-109 (212)
324 KOG3027 Mitochondrial outer me 71.2 17 0.00037 24.8 5.2 66 19-94 32-99 (257)
325 PF00731 AIRC: AIR carboxylase 70.5 9.4 0.0002 24.3 3.8 41 19-59 11-51 (150)
326 PF00004 AAA: ATPase family as 70.3 7 0.00015 22.9 3.1 61 13-73 1-67 (132)
327 TIGR01689 EcbF-BcbF capsule bi 70.0 17 0.00036 22.4 4.7 36 10-45 40-87 (126)
328 KOG1734 Predicted RING-contain 66.5 2.9 6.3E-05 29.4 0.9 10 18-27 270-279 (328)
329 cd06381 PBP1_iGluR_delta_like 66.2 47 0.001 23.9 7.2 38 3-40 54-91 (363)
330 PF10087 DUF2325: Uncharacteri 66.1 23 0.0005 20.3 4.9 38 4-41 42-81 (97)
331 cd06389 PBP1_iGluR_AMPA_GluR2 66.0 30 0.00066 24.8 6.1 83 2-85 48-141 (370)
332 KOG3414 Component of the U4/U6 65.7 21 0.00046 22.3 4.4 56 13-75 27-90 (142)
333 cd08183 Fe-ADH2 Iron-containin 65.4 39 0.00084 24.4 6.5 47 11-57 23-69 (374)
334 PF00282 Pyridoxal_deC: Pyrido 63.2 17 0.00036 26.4 4.3 73 10-84 139-216 (373)
335 COG0602 NrdG Organic radical a 62.9 5.5 0.00012 26.7 1.7 82 12-100 22-110 (212)
336 cd03035 ArsC_Yffb Arsenate Red 62.9 8.8 0.00019 22.7 2.4 60 21-80 35-105 (105)
337 PRK00766 hypothetical protein; 62.8 16 0.00035 24.3 3.8 44 36-79 43-86 (194)
338 PF13905 Thioredoxin_8: Thiore 62.6 25 0.00054 19.5 7.0 56 10-70 33-88 (95)
339 PF09822 ABC_transp_aux: ABC-t 62.4 24 0.00052 24.1 4.8 45 4-48 20-75 (271)
340 PF12689 Acid_PPase: Acid Phos 62.2 17 0.00037 23.6 3.8 65 9-74 58-134 (169)
341 cd05565 PTS_IIB_lactose PTS_II 62.0 19 0.00041 21.2 3.7 54 23-76 16-84 (99)
342 cd03129 GAT1_Peptidase_E_like 61.0 44 0.00096 21.9 9.7 77 10-95 29-109 (210)
343 TIGR00853 pts-lac PTS system, 60.5 31 0.00067 20.0 4.7 69 11-79 4-90 (95)
344 PF02288 Dehydratase_MU: Dehyd 60.4 25 0.00053 21.3 4.1 41 11-51 3-46 (112)
345 PF07728 AAA_5: AAA domain (dy 60.3 31 0.00066 20.7 4.6 40 12-51 1-40 (139)
346 PF00763 THF_DHG_CYH: Tetrahyd 59.5 27 0.00059 21.0 4.2 59 12-70 31-93 (117)
347 cd05564 PTS_IIB_chitobiose_lic 59.0 33 0.00072 19.8 4.5 58 22-79 14-86 (96)
348 cd02127 PA_hPAP21_like PA_hPAP 58.8 38 0.00083 20.4 4.8 62 10-73 34-97 (118)
349 PRK15317 alkyl hydroperoxide r 58.7 13 0.00029 28.0 3.3 30 5-35 15-44 (517)
350 PF13743 Thioredoxin_5: Thiore 58.6 10 0.00023 24.4 2.4 32 15-46 2-39 (176)
351 cd00897 UGPase_euk Eukaryotic 58.2 65 0.0014 22.9 7.1 76 24-100 39-138 (300)
352 TIGR00014 arsC arsenate reduct 57.0 27 0.00059 20.8 3.9 30 50-79 77-106 (114)
353 TIGR03757 conj_TIGR03757 integ 56.5 9.7 0.00021 23.1 1.8 22 60-81 80-102 (113)
354 cd03145 GAT1_cyanophycinase Ty 56.4 57 0.0012 21.7 8.1 78 10-96 29-112 (217)
355 KOG3028 Translocase of outer m 55.7 75 0.0016 22.9 7.6 65 12-87 3-73 (313)
356 PRK15348 type III secretion sy 55.7 28 0.00061 24.1 4.2 89 8-97 16-119 (249)
357 cd06390 PBP1_iGluR_AMPA_GluR1 55.7 75 0.0016 22.9 7.0 82 3-85 48-140 (364)
358 cd04336 YeaK YeaK is an unchar 55.4 37 0.0008 21.0 4.5 27 25-51 2-28 (153)
359 PRK08118 topology modulation p 55.1 52 0.0011 20.9 6.4 65 11-78 2-72 (167)
360 KOG3160 Gamma-interferon induc 54.3 12 0.00027 25.3 2.3 18 10-27 40-57 (220)
361 cd03082 TRX_Fd_NuoE_W_FDH_beta 54.3 24 0.00051 19.3 3.1 18 62-79 44-61 (72)
362 PLN02948 phosphoribosylaminoim 53.8 48 0.001 25.7 5.6 71 17-87 419-513 (577)
363 cd04335 PrdX_deacylase This CD 53.6 51 0.0011 20.5 4.9 45 25-70 2-46 (156)
364 PLN00020 ribulose bisphosphate 53.1 53 0.0011 24.5 5.4 34 12-45 150-183 (413)
365 PF11238 DUF3039: Protein of u 52.7 9.1 0.0002 20.4 1.1 13 19-31 45-57 (58)
366 cd08193 HVD 5-hydroxyvalerate 52.4 84 0.0018 22.7 6.4 48 11-58 27-78 (376)
367 cd01520 RHOD_YbbB Member of th 52.4 43 0.00093 20.1 4.3 34 9-44 85-118 (128)
368 PF15616 TerY-C: TerY-C metal 52.3 4.6 9.9E-05 25.2 -0.0 15 15-29 74-88 (131)
369 TIGR03167 tRNA_sel_U_synt tRNA 52.3 74 0.0016 22.7 6.0 73 12-88 76-150 (311)
370 PF08874 DUF1835: Domain of un 51.9 48 0.001 19.7 4.5 40 4-44 80-123 (124)
371 PF13364 BetaGal_dom4_5: Beta- 51.5 12 0.00027 22.2 1.8 19 61-79 60-78 (111)
372 TIGR03140 AhpF alkyl hydropero 51.3 21 0.00045 26.9 3.2 29 6-35 16-44 (515)
373 TIGR03567 FMN_reduc_SsuE FMN r 50.9 56 0.0012 20.7 4.9 34 2-35 57-92 (171)
374 PF06053 DUF929: Domain of unk 50.9 11 0.00023 26.1 1.6 24 13-36 62-89 (249)
375 PF01949 DUF99: Protein of unk 50.7 12 0.00025 24.8 1.7 49 36-85 37-87 (187)
376 cd00755 YgdL_like Family of ac 50.6 31 0.00068 23.4 3.8 23 15-37 150-172 (231)
377 COG1163 DRG Predicted GTPase [ 50.4 80 0.0017 23.1 5.8 60 24-85 201-261 (365)
378 PF07511 DUF1525: Protein of u 50.3 14 0.00031 22.5 1.9 24 60-83 79-103 (114)
379 PLN02790 transketolase 49.7 70 0.0015 25.2 6.0 88 12-99 542-641 (654)
380 PF04805 Pox_E10: E10-like pro 49.6 17 0.00036 20.1 1.9 18 19-36 16-34 (70)
381 PF13353 Fer4_12: 4Fe-4S singl 49.3 21 0.00046 21.4 2.6 14 12-25 7-23 (139)
382 cd08192 Fe-ADH7 Iron-containin 49.3 97 0.0021 22.3 6.4 48 11-58 25-76 (370)
383 PF07908 D-aminoacyl_C: D-amin 48.7 16 0.00035 18.4 1.7 16 63-78 18-33 (48)
384 PRK04195 replication factor C 48.5 1.1E+02 0.0025 22.9 8.5 35 10-44 39-73 (482)
385 cd08170 GlyDH Glycerol dehydro 48.4 96 0.0021 22.1 6.2 47 11-57 23-71 (351)
386 PRK05282 (alpha)-aspartyl dipe 48.1 87 0.0019 21.4 8.6 80 3-96 23-108 (233)
387 cd08186 Fe-ADH8 Iron-containin 48.0 98 0.0021 22.4 6.2 47 11-57 27-78 (383)
388 cd03034 ArsC_ArsC Arsenate Red 47.9 49 0.0011 19.6 4.0 58 22-79 36-105 (112)
389 PRK01655 spxA transcriptional 47.6 26 0.00055 21.5 2.8 56 25-80 40-107 (131)
390 PF11399 DUF3192: Protein of u 47.3 17 0.00038 21.7 1.9 17 63-79 80-96 (102)
391 cd08185 Fe-ADH1 Iron-containin 47.3 1.1E+02 0.0023 22.2 6.3 46 11-56 26-76 (380)
392 COG1628 Endonuclease V homolog 47.3 47 0.001 22.0 4.0 50 35-85 41-92 (185)
393 TIGR00734 hisAF_rel hisA/hisF 47.2 63 0.0014 21.7 4.8 63 23-88 142-206 (221)
394 PF14237 DUF4339: Domain of un 47.2 28 0.00062 17.0 2.5 24 68-91 4-29 (45)
395 PLN02958 diacylglycerol kinase 47.1 1.1E+02 0.0025 23.1 6.5 43 9-51 110-159 (481)
396 cd03032 ArsC_Spx Arsenate Redu 46.7 29 0.00064 20.6 2.9 31 50-80 77-107 (115)
397 TIGR01616 nitro_assoc nitrogen 46.6 42 0.0009 20.6 3.6 59 22-80 38-106 (126)
398 PF15379 DUF4606: Domain of un 46.5 19 0.00041 21.6 1.9 19 14-32 27-45 (104)
399 PF08599 Nbs1_C: DNA damage re 46.5 26 0.00057 19.0 2.3 31 60-96 13-44 (65)
400 cd06392 PBP1_iGluR_delta_1 N-t 46.4 1.2E+02 0.0025 22.4 6.7 82 3-84 54-160 (400)
401 PF05673 DUF815: Protein of un 46.1 87 0.0019 21.8 5.4 62 10-74 52-116 (249)
402 cd01444 GlpE_ST GlpE sulfurtra 45.9 52 0.0011 18.1 4.2 28 9-37 55-82 (96)
403 cd01521 RHOD_PspE2 Member of t 45.8 59 0.0013 18.8 4.3 28 10-37 64-92 (110)
404 PLN02590 probable tyrosine dec 45.2 1.4E+02 0.0031 23.0 7.1 73 11-85 228-310 (539)
405 PRK02935 hypothetical protein; 45.0 4.6 0.0001 24.2 -0.8 17 20-36 72-88 (110)
406 PF01704 UDPGP: UTP--glucose-1 45.0 1.1E+02 0.0023 22.9 6.1 76 24-100 92-193 (420)
407 TIGR00011 YbaK_EbsC ybaK/ebsC 44.7 55 0.0012 20.3 4.0 23 26-48 2-24 (152)
408 TIGR02263 benz_CoA_red_C benzo 44.4 59 0.0013 23.7 4.6 6 65-70 352-357 (380)
409 PLN02204 diacylglycerol kinase 44.0 1.3E+02 0.0027 23.8 6.4 44 9-52 158-207 (601)
410 PF01522 Polysacc_deac_1: Poly 43.2 19 0.00041 21.0 1.7 34 4-38 89-122 (123)
411 cd08176 LPO Lactadehyde:propan 42.8 1E+02 0.0023 22.2 5.7 47 11-57 29-79 (377)
412 TIGR02069 cyanophycinase cyano 42.8 1.1E+02 0.0024 21.0 6.6 34 12-45 30-67 (250)
413 PRK09590 celB cellobiose phosp 42.7 72 0.0016 18.9 5.2 66 12-77 3-88 (104)
414 TIGR00635 ruvB Holliday juncti 42.6 1.1E+02 0.0024 21.0 7.3 59 12-73 32-90 (305)
415 PRK01415 hypothetical protein; 42.6 49 0.0011 22.8 3.8 30 7-37 168-197 (247)
416 cd08188 Fe-ADH4 Iron-containin 42.5 1.3E+02 0.0028 21.8 6.2 47 11-57 29-79 (377)
417 PRK12559 transcriptional regul 42.0 37 0.0008 20.9 2.9 59 22-80 37-107 (131)
418 PF11008 DUF2846: Protein of u 41.8 24 0.00052 21.0 2.0 17 62-78 39-55 (117)
419 PRK14189 bifunctional 5,10-met 41.5 1.3E+02 0.0027 21.3 5.9 48 21-68 47-94 (285)
420 PF00403 HMA: Heavy-metal-asso 41.3 51 0.0011 16.8 4.0 18 19-36 7-26 (62)
421 PF08308 PEGA: PEGA domain; I 41.3 24 0.00051 18.8 1.8 12 67-78 14-25 (71)
422 PRK10670 hypothetical protein; 40.9 61 0.0013 20.5 3.8 22 26-47 3-24 (159)
423 PF03691 UPF0167: Uncharacteri 40.8 46 0.001 21.8 3.3 72 20-96 51-135 (176)
424 PRK14180 bifunctional 5,10-met 40.4 1.3E+02 0.0028 21.2 5.8 59 12-70 33-95 (282)
425 COG4822 CbiK Cobalamin biosynt 39.8 1.3E+02 0.0027 20.9 6.4 73 3-75 126-209 (265)
426 PLN02880 tyrosine decarboxylas 39.5 1E+02 0.0022 23.4 5.3 71 11-84 180-261 (490)
427 TIGR03191 benz_CoA_bzdO benzoy 39.5 51 0.0011 24.6 3.7 46 26-75 352-402 (430)
428 PHA00729 NTP-binding motif con 39.1 1.2E+02 0.0027 20.6 6.3 24 12-35 19-42 (226)
429 cd02991 UAS_ETEA UAS family, E 38.9 87 0.0019 18.7 6.6 15 56-70 68-82 (116)
430 PRK07758 hypothetical protein; 38.6 31 0.00066 20.3 2.0 12 26-37 45-56 (95)
431 KOG4700 Uncharacterized homolo 38.5 34 0.00073 22.7 2.3 35 52-86 101-136 (207)
432 PF14606 Lipase_GDSL_3: GDSL-l 38.5 1.1E+02 0.0025 20.0 5.8 60 13-72 36-101 (178)
433 CHL00195 ycf46 Ycf46; Provisio 38.3 1.3E+02 0.0028 23.0 5.7 36 10-45 259-294 (489)
434 PF14424 Toxin-deaminase: The 38.1 51 0.0011 20.4 3.1 23 11-33 97-120 (133)
435 PRK14174 bifunctional 5,10-met 38.0 1.5E+02 0.0032 21.1 5.8 57 12-68 33-93 (295)
436 cd01448 TST_Repeat_1 Thiosulfa 37.8 84 0.0018 18.3 4.0 26 12-37 81-106 (122)
437 PF02662 FlpD: Methyl-viologen 37.6 96 0.0021 18.9 6.4 81 12-99 1-91 (124)
438 COG1631 RPL42A Ribosomal prote 37.4 9.2 0.0002 22.4 -0.3 9 18-26 8-16 (94)
439 PF04512 Baculo_PEP_N: Baculov 37.3 50 0.0011 19.5 2.8 24 63-86 3-27 (97)
440 smart00450 RHOD Rhodanese Homo 37.2 71 0.0015 17.2 3.8 26 11-37 57-82 (100)
441 PRK14167 bifunctional 5,10-met 36.8 1.6E+02 0.0034 21.0 5.8 51 20-70 45-95 (297)
442 PRK14190 bifunctional 5,10-met 36.7 1.5E+02 0.0033 20.9 5.9 57 12-68 34-94 (284)
443 PF14437 MafB19-deam: MafB19-l 36.2 53 0.0012 20.9 2.9 34 10-43 99-135 (146)
444 cd00002 YbaK_deacylase This CD 36.2 81 0.0017 19.5 3.8 23 26-48 3-25 (152)
445 COG4107 PhnK ABC-type phosphon 36.0 81 0.0018 21.3 3.8 71 26-98 130-202 (258)
446 TIGR03439 methyl_EasF probable 36.0 1.6E+02 0.0035 21.1 5.6 62 16-81 80-144 (319)
447 PRK14169 bifunctional 5,10-met 35.9 1.6E+02 0.0034 20.8 5.9 59 12-70 32-94 (282)
448 PRK14191 bifunctional 5,10-met 35.8 1.6E+02 0.0034 20.9 5.9 50 20-69 45-94 (285)
449 PRK14175 bifunctional 5,10-met 35.5 1.6E+02 0.0035 20.8 5.9 59 12-70 34-96 (286)
450 KOG2603 Oligosaccharyltransfer 35.5 1.7E+02 0.0038 21.2 6.1 20 13-32 64-87 (331)
451 PHA03005 sulfhydryl oxidase; P 35.4 33 0.00073 20.1 1.8 18 19-36 41-59 (96)
452 KOG0629 Glutamate decarboxylas 35.3 2E+02 0.0044 22.0 8.0 78 7-85 192-276 (510)
453 COG1927 Mtd Coenzyme F420-depe 35.2 1.5E+02 0.0032 20.4 7.0 84 12-102 62-152 (277)
454 cd01896 DRG The developmentall 35.1 1.4E+02 0.003 20.0 5.0 49 23-73 137-185 (233)
455 cd08182 HEPD Hydroxyethylphosp 35.1 1.7E+02 0.0037 21.0 6.3 46 11-56 24-70 (367)
456 cd03081 TRX_Fd_NuoE_FDH_gamma 35.1 67 0.0014 17.8 3.0 18 62-79 52-69 (80)
457 PF11023 DUF2614: Protein of u 35.1 11 0.00024 22.9 -0.2 31 21-51 72-105 (114)
458 CHL00144 odpB pyruvate dehydro 33.8 1.7E+02 0.0036 21.0 5.5 65 12-80 203-270 (327)
459 PRK14166 bifunctional 5,10-met 33.5 1.7E+02 0.0038 20.6 5.9 50 21-70 45-94 (282)
460 PF04900 Fcf1: Fcf1; InterPro 33.4 68 0.0015 18.5 3.0 21 50-73 74-94 (101)
461 PRK15116 sulfur acceptor prote 33.3 49 0.0011 23.1 2.7 23 15-37 169-192 (268)
462 COG5561 Predicted metal-bindin 33.3 57 0.0012 19.1 2.5 9 28-36 83-91 (101)
463 cd04723 HisA_HisF Phosphoribos 32.9 1.4E+02 0.0029 20.1 4.7 61 26-88 39-100 (233)
464 PRK14179 bifunctional 5,10-met 32.6 1.8E+02 0.0039 20.6 5.9 57 12-68 34-94 (284)
465 COG1154 Dxs Deoxyxylulose-5-ph 32.6 1.4E+02 0.0029 23.7 5.0 66 12-80 503-570 (627)
466 PRK14173 bifunctional 5,10-met 32.5 1.8E+02 0.004 20.6 5.9 58 12-69 31-92 (287)
467 PF07449 HyaE: Hydrogenase-1 e 32.5 93 0.002 18.6 3.4 73 4-81 19-101 (107)
468 PRK13669 hypothetical protein; 32.4 97 0.0021 17.6 3.3 18 62-79 43-60 (78)
469 PF00781 DAGK_cat: Diacylglyce 32.4 1.1E+02 0.0025 18.2 5.7 40 13-52 2-45 (130)
470 KOG3490 Transcription elongati 32.4 42 0.0009 20.2 1.9 28 13-44 20-47 (111)
471 cd02123 PA_C_RZF_like PA_C-RZF 32.3 1.3E+02 0.0029 18.9 4.5 60 10-73 67-128 (153)
472 PF06189 5-nucleotidase: 5'-nu 32.1 1.1E+02 0.0023 21.6 4.1 27 12-38 188-214 (264)
473 PF05728 UPF0227: Uncharacteri 32.1 1E+02 0.0022 20.2 3.8 56 20-79 10-72 (187)
474 PRK15454 ethanol dehydrogenase 32.0 2.1E+02 0.0045 21.0 6.2 47 11-57 50-100 (395)
475 PRK10624 L-1,2-propanediol oxi 31.9 2E+02 0.0043 20.8 6.3 46 11-56 31-80 (382)
476 PF12156 ATPase-cat_bd: Putati 31.9 40 0.00087 19.3 1.7 18 20-37 28-45 (88)
477 PF01257 2Fe-2S_thioredx: Thio 31.6 52 0.0011 20.5 2.4 18 62-79 116-133 (145)
478 COG3783 CybC Soluble cytochrom 31.6 22 0.00048 21.0 0.6 26 73-98 61-86 (100)
479 KOG3170 Conserved phosducin-li 31.5 1.1E+02 0.0024 20.8 4.0 55 13-72 115-169 (240)
480 KOG2949 Ketopantoate hydroxyme 31.5 98 0.0021 21.6 3.8 34 12-45 107-140 (306)
481 PF09248 DUF1965: Domain of un 31.3 87 0.0019 17.6 2.9 32 64-95 26-57 (74)
482 cd04732 HisA HisA. Phosphorib 31.3 1.6E+02 0.0034 19.4 4.9 60 27-88 34-95 (234)
483 TIGR03239 GarL 2-dehydro-3-deo 31.2 1.8E+02 0.0038 20.0 6.6 68 4-72 3-71 (249)
484 PRK14177 bifunctional 5,10-met 31.2 1.9E+02 0.0042 20.4 5.7 54 12-65 35-92 (284)
485 TIGR01241 FtsH_fam ATP-depende 31.1 2.1E+02 0.0046 21.5 5.9 62 11-73 89-156 (495)
486 COG5309 Exo-beta-1,3-glucanase 31.1 2E+02 0.0043 20.6 6.6 84 12-98 78-169 (305)
487 COG3529 Predicted nucleic-acid 31.0 45 0.00098 18.0 1.7 22 18-39 10-33 (66)
488 PLN02683 pyruvate dehydrogenas 30.7 1.9E+02 0.004 21.0 5.3 65 12-80 230-297 (356)
489 PF12949 HeH: HeH/LEM domain; 30.6 39 0.00084 16.0 1.3 14 25-38 7-20 (35)
490 PLN02907 glutamate-tRNA ligase 30.5 2.9E+02 0.0063 22.3 7.8 54 13-84 3-58 (722)
491 PRK14172 bifunctional 5,10-met 30.3 2E+02 0.0043 20.3 5.8 58 12-69 34-95 (278)
492 cd04816 PA_SaNapH_like PA_SaNa 29.8 1.3E+02 0.0028 17.9 5.8 61 10-73 43-103 (122)
493 PLN02897 tetrahydrofolate dehy 29.7 2.3E+02 0.0049 20.8 5.8 49 22-70 102-150 (345)
494 TIGR02652 conserved hypothetic 29.5 18 0.00038 23.0 -0.0 17 15-31 5-22 (163)
495 cd06340 PBP1_ABC_ligand_bindin 29.5 1.1E+02 0.0024 21.4 4.0 37 3-39 61-98 (347)
496 PF02837 Glyco_hydro_2_N: Glyc 29.4 49 0.0011 20.5 2.0 21 59-79 91-111 (167)
497 PRK14188 bifunctional 5,10-met 29.3 2.1E+02 0.0046 20.3 5.9 58 12-69 34-95 (296)
498 cd01532 4RHOD_Repeat_1 Member 29.3 1.1E+02 0.0024 17.0 3.8 28 10-37 50-78 (92)
499 TIGR02638 lactal_redase lactal 29.3 2.2E+02 0.0048 20.6 5.9 47 11-57 30-80 (379)
500 COG4391 Uncharacterized protei 29.3 18 0.00039 19.5 -0.0 4 21-24 51-54 (62)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=100.00 E-value=1e-36 Score=181.40 Aligned_cols=99 Identities=54% Similarity=1.059 Sum_probs=94.4
Q ss_pred HHhhhcCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHh
Q 037937 4 VRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVIS 83 (102)
Q Consensus 4 v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~ 83 (102)
+++++++++|+||++++||||++++++|++++++|+++|||.+++..++++++.+.+|++|+|+|||||++|||++++.+
T Consensus 1 ~~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred ChhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 46789999999999999999999999999999999999999998888888889888999999999999999999999999
Q ss_pred HHHcCcHHHHHHhcccccC
Q 037937 84 LHVDGSLKQMLIDARAIWF 102 (102)
Q Consensus 84 ~~~~g~L~~~l~~~g~~~~ 102 (102)
++++|+|.++|+++|++|+
T Consensus 81 l~~~G~L~~~l~~~~~~~~ 99 (99)
T TIGR02189 81 LHISGSLVPMLKQAGALWL 99 (99)
T ss_pred HHHcCCHHHHHHHhCcccC
Confidence 9999999999999999875
No 2
>PHA03050 glutaredoxin; Provisional
Probab=100.00 E-value=2.4e-35 Score=177.80 Aligned_cols=100 Identities=16% Similarity=0.321 Sum_probs=94.2
Q ss_pred hhHHhhhcCCcEEEEEcCCCchHHHHHHHHHHcCC---CcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEech
Q 037937 2 DRVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGA---SPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSA 78 (102)
Q Consensus 2 ~~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v---~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~ 78 (102)
+++++++++++|+||++++||||++|+++|+++++ +|++++++...+..++++.+.+.+|+.|||+|||||++|||+
T Consensus 4 ~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ 83 (108)
T PHA03050 4 EFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGY 83 (108)
T ss_pred HHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeCh
Confidence 46889999999999999999999999999999999 799999998666677888999999999999999999999999
Q ss_pred HHHHhHHHcCcHHHHHHhccccc
Q 037937 79 KDVISLHVDGSLKQMLIDARAIW 101 (102)
Q Consensus 79 ~~~~~~~~~g~L~~~l~~~g~~~ 101 (102)
+++.+++++|+|.++|+++|++|
T Consensus 84 ddl~~l~~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 84 SDLLEIDNMDALGDILSSIGVLR 106 (108)
T ss_pred HHHHHHHHcCCHHHHHHHccccc
Confidence 99999999999999999999987
No 3
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-34 Score=171.19 Aligned_cols=100 Identities=45% Similarity=0.847 Sum_probs=97.1
Q ss_pred hhHHhhhcCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHH
Q 037937 2 DRVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDV 81 (102)
Q Consensus 2 ~~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~ 81 (102)
+++++++++++|+||++++||||++++.+|.+.++++.++++|.++++.++++++.+.+|++|+|.|||+|++|||.+++
T Consensus 5 ~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl 84 (104)
T KOG1752|consen 5 AKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDL 84 (104)
T ss_pred HHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHcCcHHHHHHhccccc
Q 037937 82 ISLHVDGSLKQMLIDARAIW 101 (102)
Q Consensus 82 ~~~~~~g~L~~~l~~~g~~~ 101 (102)
.+++.+|+|.++|+.+|++|
T Consensus 85 ~~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 85 MALHKSGELVPLLKEAGALW 104 (104)
T ss_pred HHHHHcCCHHHHHHHhhccC
Confidence 99999999999999999875
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=100.00 E-value=7.2e-34 Score=172.46 Aligned_cols=97 Identities=20% Similarity=0.387 Sum_probs=90.2
Q ss_pred hhHHhhhcCCcEEEEEc-----CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEe
Q 037937 2 DRVRDLASKKAAVIFTK-----SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVG 76 (102)
Q Consensus 2 ~~v~~~~~~~~v~iy~~-----~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~ig 76 (102)
+++++++++++|+||++ |+||||++|+++|++++++|.++|++.++ +++..|.+.+|++|||+|||||++||
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~---~~~~~l~~~sg~~TVPQIFI~G~~IG 82 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNP---DIRAELPKYANWPTFPQLWVDGELVG 82 (115)
T ss_pred HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCH---HHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 57899999999999999 49999999999999999999999998653 46778999999999999999999999
Q ss_pred chHHHHhHHHcCcHHHHHHhccccc
Q 037937 77 SAKDVISLHVDGSLKQMLIDARAIW 101 (102)
Q Consensus 77 g~~~~~~~~~~g~L~~~l~~~g~~~ 101 (102)
|+|++.+++++|+|+++|+++|+++
T Consensus 83 G~ddl~~l~~~G~L~~lL~~~~~~~ 107 (115)
T PRK10824 83 GCDIVIEMYQRGELQQLIKETAAKY 107 (115)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHhhh
Confidence 9999999999999999999999865
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.97 E-value=1e-30 Score=155.06 Aligned_cols=90 Identities=19% Similarity=0.466 Sum_probs=82.8
Q ss_pred hhHHhhhcCCcEEEEEc-----CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEe
Q 037937 2 DRVRDLASKKAAVIFTK-----SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVG 76 (102)
Q Consensus 2 ~~v~~~~~~~~v~iy~~-----~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~ig 76 (102)
+++++++++++|+||++ |+||||.+|+++|+++|++|+++|++.+ .+.+.++.+.+|++|+|+|||||++||
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~---~~~~~~l~~~tg~~tvP~vfi~g~~iG 79 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED---PEIRQGIKEYSNWPTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC---HHHHHHHHHHhCCCCCCEEEECCEEEe
Confidence 57899999999999998 8999999999999999999999999755 345677888899999999999999999
Q ss_pred chHHHHhHHHcCcHHHHH
Q 037937 77 SAKDVISLHVDGSLKQML 94 (102)
Q Consensus 77 g~~~~~~~~~~g~L~~~l 94 (102)
|++++.+++++|+|.++|
T Consensus 80 G~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 80 GCDIIMEMYQSGELQTLL 97 (97)
T ss_pred ChHHHHHHHHCcChHHhC
Confidence 999999999999999875
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.96 E-value=9.4e-29 Score=144.80 Aligned_cols=85 Identities=22% Similarity=0.516 Sum_probs=78.0
Q ss_pred HHhhhcCCcEEEEEc-----CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEech
Q 037937 4 VRDLASKKAAVIFTK-----SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSA 78 (102)
Q Consensus 4 v~~~~~~~~v~iy~~-----~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~ 78 (102)
+++++++++|+||++ ++||+|.+++++|++.+++|+.+|++.+ .++++++.+.+|..|+|+|||||++|||+
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~---~~~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED---EEVRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 467899999999998 6999999999999999999999999865 45667888889999999999999999999
Q ss_pred HHHHhHHHcCcHH
Q 037937 79 KDVISLHVDGSLK 91 (102)
Q Consensus 79 ~~~~~~~~~g~L~ 91 (102)
+++.+++++|+|+
T Consensus 78 ~~l~~l~~~g~L~ 90 (90)
T cd03028 78 DIVKEMHESGELQ 90 (90)
T ss_pred HHHHHHHHcCCcC
Confidence 9999999999984
No 7
>PTZ00062 glutaredoxin; Provisional
Probab=99.95 E-value=7.1e-27 Score=154.25 Aligned_cols=92 Identities=16% Similarity=0.393 Sum_probs=84.5
Q ss_pred hhHHhhhcCCcEEEEEc-----CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEe
Q 037937 2 DRVRDLASKKAAVIFTK-----SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVG 76 (102)
Q Consensus 2 ~~v~~~~~~~~v~iy~~-----~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~ig 76 (102)
+++++++++++|++|++ |+||||++++.+|++++++|..+||+.++ ++++.+.+.+|++|+|+|||||++||
T Consensus 104 ~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~---~~~~~l~~~sg~~TvPqVfI~G~~IG 180 (204)
T PTZ00062 104 EKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDP---DLREELKVYSNWPTYPQLYVNGELIG 180 (204)
T ss_pred HHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCH---HHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 46889999999999999 69999999999999999999999998653 45677888899999999999999999
Q ss_pred chHHHHhHHHcCcHHHHHHh
Q 037937 77 SAKDVISLHVDGSLKQMLID 96 (102)
Q Consensus 77 g~~~~~~~~~~g~L~~~l~~ 96 (102)
|+|++.+++++|+|.++|.+
T Consensus 181 G~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 181 GHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred ChHHHHHHHHcCChhhhhhh
Confidence 99999999999999999864
No 8
>PRK10638 glutaredoxin 3; Provisional
Probab=99.95 E-value=6.5e-27 Score=135.01 Aligned_cols=82 Identities=28% Similarity=0.472 Sum_probs=74.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHcCcH
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDGSL 90 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~g~L 90 (102)
.+|++|++++||+|++++.+|++.+++|+++|++.+++ .++.+.+.+|..++|+||+||+++||++++.+++.+|+|
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~---~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l 78 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAA---KREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGL 78 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCH
Confidence 47999999999999999999999999999999986543 335577778999999999999999999999999999999
Q ss_pred HHHHH
Q 037937 91 KQMLI 95 (102)
Q Consensus 91 ~~~l~ 95 (102)
.++|+
T Consensus 79 ~~~~~ 83 (83)
T PRK10638 79 DPLLK 83 (83)
T ss_pred HHHhC
Confidence 99874
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.94 E-value=1.6e-26 Score=131.95 Aligned_cols=79 Identities=28% Similarity=0.478 Sum_probs=71.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHcCcHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQ 92 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~g~L~~ 92 (102)
|++|++++||+|++|+++|++++++|++++++.++. .++.+...+|..++|+||+||+++||++++.+++++|+|++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~---~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~ 77 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPA---LRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDP 77 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHH---HHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhh
Confidence 689999999999999999999999999999987653 33456677889999999999999999999999999999998
Q ss_pred HH
Q 037937 93 ML 94 (102)
Q Consensus 93 ~l 94 (102)
+|
T Consensus 78 ~l 79 (79)
T TIGR02181 78 LL 79 (79)
T ss_pred hC
Confidence 75
No 10
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.94 E-value=3.9e-26 Score=131.15 Aligned_cols=82 Identities=34% Similarity=0.640 Sum_probs=76.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCC--cEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHcCcH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGAS--PAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDGSL 90 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~--~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~g~L 90 (102)
|++|+++|||+|++++++|++.+++ |+.++++.+++..++++.+.+.+|..++|+||+||+++||++++.+++++|+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 6899999999999999999999999 99999998877777777788888999999999999999999999999999999
Q ss_pred HHHH
Q 037937 91 KQML 94 (102)
Q Consensus 91 ~~~l 94 (102)
.++|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 9875
No 11
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.6e-26 Score=130.41 Aligned_cols=78 Identities=29% Similarity=0.506 Sum_probs=70.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHcCcH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDGSL 90 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~g~L 90 (102)
.|+||++++||||.+++++|+++|++|++++++.++. .+.++.+++.+|++|||+|||||+++||++++.++...|.|
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l 79 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL 79 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence 6899999999999999999999999999999998875 44456677777999999999999999999999999888776
No 12
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.93 E-value=1.5e-25 Score=128.29 Aligned_cols=81 Identities=43% Similarity=0.792 Sum_probs=75.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHcCcHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDGSLK 91 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~g~L~ 91 (102)
+|++|++++||+|++++++|++.+++|+.++++.+++..+++..+.+.+|..++|++|+||+++||++++.++.++|+|+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 58999999999999999999999999999999988776667777888899999999999999999999999999999997
Q ss_pred H
Q 037937 92 Q 92 (102)
Q Consensus 92 ~ 92 (102)
+
T Consensus 81 ~ 81 (82)
T cd03419 81 K 81 (82)
T ss_pred C
Confidence 5
No 13
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.9e-25 Score=129.62 Aligned_cols=94 Identities=24% Similarity=0.450 Sum_probs=86.8
Q ss_pred hhHHhhhcCCcEEEEEc-----CCCchHHHHHHHHHHcC-CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEE
Q 037937 2 DRVRDLASKKAAVIFTK-----SSCCMCHSIKTLFYELG-ASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYV 75 (102)
Q Consensus 2 ~~v~~~~~~~~v~iy~~-----~~Cp~C~~~~~~l~~~~-v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~i 75 (102)
++|++.++.++|++|.+ |.|.|+.++..+|...| ++|..+||-.+ .++|+.++++++|+|+||+||||++|
T Consensus 6 ~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d---~eiR~~lk~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 6 DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD---PEIRQGLKEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred HHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC---HHHHhccHhhcCCCCCceeeECCEEe
Confidence 57899999999999998 67999999999999999 78999999876 45667899999999999999999999
Q ss_pred echHHHHhHHHcCcHHHHHHhcc
Q 037937 76 GSAKDVISLHVDGSLKQMLIDAR 98 (102)
Q Consensus 76 gg~~~~~~~~~~g~L~~~l~~~g 98 (102)
||+|-+.+|+++|+|+++|++++
T Consensus 83 GG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 83 GGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred ccHHHHHHHHHcchHHHHHHhcC
Confidence 99999999999999999998864
No 14
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.93 E-value=1.9e-25 Score=140.88 Aligned_cols=83 Identities=28% Similarity=0.499 Sum_probs=72.8
Q ss_pred cEEEEEcC------CCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhC----CCCCccEEEECCEEEechHHH
Q 037937 12 AAVIFTKS------SCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALG----CNPSVPAVFIGGRYVGSAKDV 81 (102)
Q Consensus 12 ~v~iy~~~------~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~----g~~tvP~ifi~g~~igg~~~~ 81 (102)
+|+||+++ +||+|++|+++|++++++|.++||+++++.. ++|++.. ++.++|+|||||++|||++++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~---~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFR---EELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHH---HHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 58999999 9999999999999999999999999775432 3344443 358999999999999999999
Q ss_pred HhHHHcCcHHHHHHhc
Q 037937 82 ISLHVDGSLKQMLIDA 97 (102)
Q Consensus 82 ~~~~~~g~L~~~l~~~ 97 (102)
.+++++|+|.++|+.+
T Consensus 78 ~~L~e~G~L~~lL~~~ 93 (147)
T cd03031 78 LRLNESGELRKLLKGI 93 (147)
T ss_pred HHHHHcCCHHHHHhhc
Confidence 9999999999999875
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.92 E-value=2e-24 Score=121.91 Aligned_cols=74 Identities=26% Similarity=0.452 Sum_probs=64.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCC-CccEEEECCEEEechHHHHhHHHcC
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNP-SVPAVFIGGRYVGSAKDVISLHVDG 88 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~-tvP~ifi~g~~igg~~~~~~~~~~g 88 (102)
+|++|++++||+|++|+.+|++++++|++++++.++ +.++.+.+.+|.. ++|+||+||+++||++++.+++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~---~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDP---ALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCH---HHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 589999999999999999999999999999998763 2334455555656 9999999999999999999999886
No 16
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.91 E-value=3e-24 Score=122.83 Aligned_cols=76 Identities=33% Similarity=0.571 Sum_probs=66.1
Q ss_pred hhhcCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 6 DLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 6 ~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
++.++++|++|++++||+|++++++|++.|++|+.++++.++... .+...+|..++|+||+||+++||++++.++.
T Consensus 3 ~~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~----~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 3 QARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGR----SLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred CcCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHH----HHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 345788999999999999999999999999999999998765443 3455678899999999999999999998764
No 17
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.91 E-value=5.4e-24 Score=120.00 Aligned_cols=71 Identities=21% Similarity=0.371 Sum_probs=63.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
+|++|+.++||+|++|+.+|++.+++|+.+|++.++.. ++.+.+.+|..++|+||+||++|||++++.+++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~---~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPER---KAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHH---HHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 68999999999999999999999999999999976543 356777788899999999999999999998875
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.91 E-value=1.1e-23 Score=118.37 Aligned_cols=70 Identities=33% Similarity=0.533 Sum_probs=62.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
+|+||++++||+|.+|+++|++++++|++++++.++.. ..+...+|..++|+||+||+++||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~----~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITG----RSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhH----HHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 68999999999999999999999999999999876633 34566689999999999999999999998874
No 19
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.90 E-value=2.5e-23 Score=149.64 Aligned_cols=88 Identities=19% Similarity=0.304 Sum_probs=76.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHH-----hhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALR-----ALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~-----~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
.+|+||++++||+|++++++|++.|++|+++||+.++...++.+.+. ..+|..|||+|||||++|||++++..
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~-- 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA-- 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH--
Confidence 47999999999999999999999999999999997776555433332 33688999999999999999999987
Q ss_pred HcCcHHHHHHhcccc
Q 037937 86 VDGSLKQMLIDARAI 100 (102)
Q Consensus 86 ~~g~L~~~l~~~g~~ 100 (102)
.+|+|.++|++.|++
T Consensus 80 ~~g~l~~~~~~~~~~ 94 (410)
T PRK12759 80 RAGEVIARVKGSSLT 94 (410)
T ss_pred HhCCHHHHhcCCccc
Confidence 899999999987764
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.88 E-value=1.6e-22 Score=117.43 Aligned_cols=73 Identities=22% Similarity=0.353 Sum_probs=59.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC-----CCcEEEEeccCCCcHHHHHHHHhhCCC--CCccEEEECCEEEechHHHHhHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELG-----ASPAIHELDQDANGREIEWALRALGCN--PSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~g~--~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
|+||++++||+|.+|+++|++++ ++|+.+|++.+.... +.+...+|. .+||+||+||+++||++++.++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~---~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISK---ADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHH---HHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHH
Confidence 78999999999999999999985 567777777543222 335555665 79999999999999999999998
Q ss_pred HcC
Q 037937 86 VDG 88 (102)
Q Consensus 86 ~~g 88 (102)
+++
T Consensus 79 ~~~ 81 (86)
T TIGR02183 79 KEN 81 (86)
T ss_pred Hhc
Confidence 764
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.88 E-value=1.7e-22 Score=116.94 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=61.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHH-----cCCCcEEEEeccCCCcHHHHHHHHhhCCC--CCccEEEECCEEEechHHHHhH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYE-----LGASPAIHELDQDANGREIEWALRALGCN--PSVPAVFIGGRYVGSAKDVISL 84 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~-----~~v~~~~~~vd~~~~~~~~~~~l~~~~g~--~tvP~ifi~g~~igg~~~~~~~ 84 (102)
+|+||++++||+|++|+++|++ .+++|+.+|++.++... +.+....|. .++|+|||||+++||++++.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~---~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISK---ADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHH---HHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 6999999999999999999999 79999999998654322 234444554 7999999999999999999998
Q ss_pred HHc
Q 037937 85 HVD 87 (102)
Q Consensus 85 ~~~ 87 (102)
.++
T Consensus 79 ~~~ 81 (85)
T PRK11200 79 VKE 81 (85)
T ss_pred HHH
Confidence 754
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.86 E-value=3.8e-21 Score=106.57 Aligned_cols=71 Identities=32% Similarity=0.624 Sum_probs=63.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
+|++|++++||+|++++.+|++++++|..+|++.+++ .++.+...+|..++|++|+||+++||++++.+++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~---~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE---LREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 5899999999999999999999999999999987654 3456777788899999999999999999998875
No 23
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.84 E-value=1.1e-20 Score=102.62 Aligned_cols=60 Identities=32% Similarity=0.594 Sum_probs=53.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYV 75 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~i 75 (102)
|++|++++||+|.+++++|++.|++|+++|++.++ +.++.+++.+|..++|+||+||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~---~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE---EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH---HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch---hHHHHHHHHcCCCccCEEEECCEEC
Confidence 68999999999999999999999999999999886 3345677777999999999999986
No 24
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.6e-20 Score=122.22 Aligned_cols=92 Identities=20% Similarity=0.433 Sum_probs=84.5
Q ss_pred hHHhhhcCCcEEEEEc-----CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEec
Q 037937 3 RVRDLASKKAAVIFTK-----SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGS 77 (102)
Q Consensus 3 ~v~~~~~~~~v~iy~~-----~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg 77 (102)
++.++++.++|++|.+ |.|.+.+++..+|++.+++|..+||-.|++ +|..++..+.|+|+||+||||+++||
T Consensus 131 ~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~Dee---lRqglK~fSdWPTfPQlyI~GEFiGG 207 (227)
T KOG0911|consen 131 RLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEE---LRQGLKEFSDWPTFPQLYVKGEFIGG 207 (227)
T ss_pred HHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHH---HHHHhhhhcCCCCccceeECCEeccC
Confidence 6778899999999998 579999999999999999999999987754 66788899999999999999999999
Q ss_pred hHHHHhHHHcCcHHHHHHhc
Q 037937 78 AKDVISLHVDGSLKQMLIDA 97 (102)
Q Consensus 78 ~~~~~~~~~~g~L~~~l~~~ 97 (102)
+|-+.+|+++|+|...|+++
T Consensus 208 lDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 208 LDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred cHHHHHHhhcccHHHHhhcC
Confidence 99999999999999999864
No 25
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.83 E-value=3.3e-20 Score=108.81 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=66.8
Q ss_pred EEEEEcCC------CchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhC----CCCCccEEEECCEEEechHHHH
Q 037937 13 AVIFTKSS------CCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALG----CNPSVPAVFIGGRYVGSAKDVI 82 (102)
Q Consensus 13 v~iy~~~~------Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~----g~~tvP~ifi~g~~igg~~~~~ 82 (102)
|++|+++- =..|.+++.+|+.++++|+++||+.+++..+ .+.+.+ |..++|+|||||+|+||++++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~---em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQ---WMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHH---HHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 66777653 3468899999999999999999998765543 444443 4689999999999999999999
Q ss_pred hHHHcCcHHHHHH
Q 037937 83 SLHVDGSLKQMLI 95 (102)
Q Consensus 83 ~~~~~g~L~~~l~ 95 (102)
+++++|+|+++|+
T Consensus 79 ~l~e~g~L~~lLk 91 (92)
T cd03030 79 EAKENNTLEEFLK 91 (92)
T ss_pred HHHhCCCHHHHhC
Confidence 9999999999985
No 26
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.78 E-value=1e-18 Score=100.43 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=55.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~ 79 (102)
+|++|++++||+|++++.+|++.|++|+++|++.+++.. +.+.. .|..++|++++++..++||+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~---~~~~~-~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAA---ETLRA-QGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHH---HHHHH-cCCCCcCEEEECCEEEecCC
Confidence 689999999999999999999999999999999765443 33444 48899999999999999996
No 27
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.78 E-value=7.2e-19 Score=98.78 Aligned_cols=64 Identities=17% Similarity=0.287 Sum_probs=54.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCE-EEechHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGR-YVGSAKD 80 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~-~igg~~~ 80 (102)
|++|++++||+|++++++|++.|++|+++|++.++... +.+.. .|..++|+++++|. ++||++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~---~~~~~-~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAI---DYVKA-QGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHH---HHHHH-cCCcccCEEEECCCcEEeccCH
Confidence 57999999999999999999999999999999765443 34544 37889999999775 9999863
No 28
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.4e-16 Score=105.07 Aligned_cols=88 Identities=25% Similarity=0.471 Sum_probs=75.9
Q ss_pred CCcEEEEEcC------CCchHHHHHHHHHHcCCCcEEEEeccCCCcH-HHHHHHHhhCCCCCccEEEECCEEEechHHHH
Q 037937 10 KKAAVIFTKS------SCCMCHSIKTLFYELGASPAIHELDQDANGR-EIEWALRALGCNPSVPAVFIGGRYVGSAKDVI 82 (102)
Q Consensus 10 ~~~v~iy~~~------~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~-~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~ 82 (102)
..+|++|+++ +--.|..++.+|++.+|.|.+.||.++.... ++++.+.......++|+|||+|++|||.+++.
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence 3479999986 6789999999999999999999999986653 35555555344679999999999999999999
Q ss_pred hHHHcCcHHHHHHhc
Q 037937 83 SLHVDGSLKQMLIDA 97 (102)
Q Consensus 83 ~~~~~g~L~~~l~~~ 97 (102)
+|++.|+|.++|+++
T Consensus 210 ~LnE~GkL~~lL~~~ 224 (281)
T KOG2824|consen 210 RLNEEGKLGKLLKGI 224 (281)
T ss_pred hhhhcchHHHHHhcC
Confidence 999999999999875
No 29
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.64 E-value=8.4e-16 Score=85.35 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=54.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~ 79 (102)
+|++|+.+|||+|++++.+|++.+++|..+|++.++... +.+.+..|..++|+++++|+.++|++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~---~~~~~~~~~~~vP~~~~~~~~~~g~~ 65 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAR---EEVLKVLGQRGVPVIVIGHKIIVGFD 65 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHH---HHHHHHhCCCcccEEEECCEEEeeCC
Confidence 478999999999999999999999999999998654332 34455568889999999999998875
No 30
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.61 E-value=4.7e-15 Score=82.20 Aligned_cols=66 Identities=26% Similarity=0.417 Sum_probs=56.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKD 80 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~ 80 (102)
++++|+.++||+|++++.+|++.+++|..++++.++. ..+.+...++..++|+++++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~---~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPE---ALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHH---HHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 4789999999999999999999999999999986533 23445566677899999999999999874
No 31
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.58 E-value=1.1e-14 Score=81.91 Aligned_cols=65 Identities=17% Similarity=0.372 Sum_probs=52.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhC-CCCCccEEEE-CCEEEechH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALG-CNPSVPAVFI-GGRYVGSAK 79 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~-g~~tvP~ifi-~g~~igg~~ 79 (102)
+|++|+++|||+|++++.+|++.+++|..+|++.++... +.+...+ +..++|++++ ||+.+....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~---~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAA---DRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHH---HHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 488999999999999999999999999999998765443 3444444 7889999976 667765543
No 32
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.53 E-value=4e-14 Score=78.00 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=46.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHc-----CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEe
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYEL-----GASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVG 76 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~-----~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~ig 76 (102)
+|++|+++|||+|++++++|++. ++++..+|++.+++ +....|..++|++++||++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~-------l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD-------LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh-------HHHHcCCcccCEEEECCEEEE
Confidence 58999999999999999999876 46677777665432 334467889999999999875
No 33
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.50 E-value=2.5e-13 Score=80.45 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=58.4
Q ss_pred cEEEEEcCCCc------hHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhC---------CCCCccEEEECCEEEe
Q 037937 12 AAVIFTKSSCC------MCHSIKTLFYELGASPAIHELDQDANGREIEWALRALG---------CNPSVPAVFIGGRYVG 76 (102)
Q Consensus 12 ~v~iy~~~~Cp------~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~---------g~~tvP~ifi~g~~ig 76 (102)
.|.+|+++.-. .+.++..+|+..+|+|+.+||..+++.++ .+++.. +....|+||+|++++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~---~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQ---WMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHH---HHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHH---HHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 47788876544 35589999999999999999998665544 333332 4456689999999999
Q ss_pred chHHHHhHHHcCcHHHHHH
Q 037937 77 SAKDVISLHVDGSLKQMLI 95 (102)
Q Consensus 77 g~~~~~~~~~~g~L~~~l~ 95 (102)
+++++.++.+.++|.+.|+
T Consensus 79 dye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 79 DYEDFEEANENGELEEFLK 97 (99)
T ss_dssp EHHHHHHHHCTT-HHHHHT
T ss_pred eHHHHHHHHhhCHHHHHhC
Confidence 9999999999999999985
No 34
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.38 E-value=8.2e-12 Score=67.91 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=58.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISL 84 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~ 84 (102)
++|+.++||+|.+++.+|+..+++|+.++++..+.... .+...++..++|.++.+|..+++...+.++
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 68999999999999999999999999999987655432 355567889999999999999998877665
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.36 E-value=1.1e-11 Score=70.24 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=57.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE--CCEEEechHHHHhHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI--GGRYVGSAKDVISLHV 86 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi--~g~~igg~~~~~~~~~ 86 (102)
+++|+.+.||+|++++.+|+++|++|+.++++..+.. ...+...++..++|++.. +|..+.+.+.+.++.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~---~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPK---RDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHH---HHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 6799999999999999999999999999998643322 234556677889999987 3678888888877654
No 36
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.31 E-value=2.2e-11 Score=67.72 Aligned_cols=68 Identities=12% Similarity=0.220 Sum_probs=55.2
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEEC-CEEEechHHHHhHHH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIG-GRYVGSAKDVISLHV 86 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~-g~~igg~~~~~~~~~ 86 (102)
.+|+.++||+|++++.+|..+|++|+.+.++..+... .+ +.++..++|+++.+ |..+++...+.++.+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~----~~-~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEAT----PI-RMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHH----HH-HhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 5899999999999999999999999999887543221 12 33567899999987 899999999888754
No 37
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.30 E-value=2.5e-11 Score=68.40 Aligned_cols=69 Identities=13% Similarity=0.309 Sum_probs=55.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEEC----CEEEechHHHHhHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIG----GRYVGSAKDVISLHV 86 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~----g~~igg~~~~~~~~~ 86 (102)
++++|+.+.||+|++++.+|.++|++|+.++++... .. .++ .++..++|+++.+ |..+.....+.++.+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-~~----~~~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~ 73 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-RK----EIK-WSSYKKVPILRVESGGDGQQLVDSSVIISTLK 73 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-HH----HHH-HhCCCccCEEEECCCCCccEEEcHHHHHHHHH
Confidence 578999999999999999999999999999885422 11 232 3677899999987 788888888877654
No 38
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.24 E-value=1.9e-10 Score=64.00 Aligned_cols=67 Identities=13% Similarity=0.333 Sum_probs=55.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEEC-CEEEechHHHHhH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIG-GRYVGSAKDVISL 84 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~-g~~igg~~~~~~~ 84 (102)
++|+.++||+|.+++.+|+++|++|+.++++...... .+.+.++..++|.+..+ |..+.....+.++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~----~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPA----EMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCH----HHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 6899999999999999999999999999998754332 34456778899999986 8888777766654
No 39
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.23 E-value=7.3e-11 Score=68.80 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=51.9
Q ss_pred hhHHhhhcCCcEEEEEcCCCchHHHHHHHHHHc-----CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEe
Q 037937 2 DRVRDLASKKAAVIFTKSSCCMCHSIKTLFYEL-----GASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVG 76 (102)
Q Consensus 2 ~~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~-----~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~ig 76 (102)
+.++++-++..+.+|+.+|||+|..+..++++. ++++..+|++..++ +...+|..++|++++||+.++
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e-------~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD-------EVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH-------HHHHcCCccCCEEEECCEEEE
Confidence 345666667789999999999999999998765 46677777764432 233468889999999998765
No 40
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.20 E-value=3.9e-10 Score=62.68 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=56.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
+++|+.+.||+|++++.+|+..|++|+.++++...... .+.+.+...++|.+..+|..+.....+.++..
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPE----DLAELNPYGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCH----HHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 36899999999999999999999999999888654333 34445667899999989888888877776643
No 41
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.18 E-value=2.5e-10 Score=64.64 Aligned_cols=57 Identities=23% Similarity=0.354 Sum_probs=40.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHH----cCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYE----LGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGR 73 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~----~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~ 73 (102)
.|++|+++|||+|+.++..|++ .+..+....+|.+.+.. +.+..|..++|++++||+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~-----~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ-----KAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH-----HHHHcCCccCCEEEECCE
Confidence 5889999999999999999875 34334444555433322 223367889999999997
No 42
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.17 E-value=6.6e-10 Score=64.53 Aligned_cols=71 Identities=10% Similarity=0.091 Sum_probs=58.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEEC-CEEEechHHHHhH
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIG-GRYVGSAKDVISL 84 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~-g~~igg~~~~~~~ 84 (102)
...+++|+.+.||+|++++.+|...|++|+.++++..... +.+.+.++..++|.+.++ |..+....-+.++
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~----~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKP----DWFLEKNPQGKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCc----HHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence 4568999999999999999999999999999998865432 234556777899999998 8888887777665
No 43
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.15 E-value=3.2e-10 Score=62.90 Aligned_cols=70 Identities=11% Similarity=0.159 Sum_probs=53.6
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE-CCEEEechHHHHhH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI-GGRYVGSAKDVISL 84 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi-~g~~igg~~~~~~~ 84 (102)
++|+.++||+|++++.+|+.++++|+.+.++...... ....+.+.++..++|.+.+ ||..+.....+.++
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQ-RSPEFLAKNPAGTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCcc-CCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence 6899999999999999999999999998887543211 0123556677889999997 66677776666554
No 44
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.11 E-value=1.2e-09 Score=60.88 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=56.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
+++|+.+.||+|++++.+|+..|++|+.++++..... ...+.+.+.+...++|.+..+|..+.....+..+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGE-HLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCC-cCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 3689999999999999999999999999988854322 11134556677789999999988887777766653
No 45
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.07 E-value=1.8e-09 Score=60.72 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=58.1
Q ss_pred EEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 15 IFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 15 iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
+|+.++||+|++++-+|+.+|++|+.++++..... ..+...++..++|++..||..+.+...+.++.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~----~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKR----PEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTS----HHHHHHSTTSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccch----hHHHhhcccccceEEEECCEEEeCHHHHHHHHH
Confidence 58999999999999999999999999999866543 235566788899999999999999998887654
No 46
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.07 E-value=5.7e-10 Score=63.12 Aligned_cols=55 Identities=22% Similarity=0.402 Sum_probs=40.9
Q ss_pred cEEEEEcCCCchHHHH----HHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEE
Q 037937 12 AAVIFTKSSCCMCHSI----KTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYV 75 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~----~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~i 75 (102)
.|.+|+ +|||.|+.+ ++++++++.+++.++++. ..+ . ...|..++|++++||+.+
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~----a-~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNE----I-LEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHH----H-HHcCCCcCCEEEECCEEE
Confidence 356666 999999999 556677888888888882 221 1 125789999999999754
No 47
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=99.06 E-value=4.9e-10 Score=67.72 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=37.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcH-HHHHHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGR-EIEWALR 57 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~-~~~~~l~ 57 (102)
|+||+.++||+|++|+++|++.|++|+++|+..++... ++.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~ 46 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE 46 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHH
Confidence 57999999999999999999999999999999877554 4544443
No 48
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=99.05 E-value=7.9e-10 Score=66.04 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=37.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCc-HHHHHHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANG-REIEWALR 57 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~-~~~~~~l~ 57 (102)
|++|++++||+|++|+++|++.|++|+++|+..++.. .++.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999876654 44554443
No 49
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.04 E-value=3.7e-09 Score=58.54 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=54.8
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISL 84 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~ 84 (102)
++|+.+.||+|.+++.+|+..|++|+.++++..... ...+.+.+.+...++|.+..+|..+.....+.++
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGE-TRTPEFLALNPNGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcc-cCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 689999999999999999999999999998753321 1112344556678999999999988877766654
No 50
>PHA02125 thioredoxin-like protein
Probab=99.03 E-value=1.5e-09 Score=61.14 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=41.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYV 75 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~i 75 (102)
|++|+.+||++|+.++.+|++. ++..+++|.++.. .+....+..++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~~-----~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEGV-----ELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCCH-----HHHHHcCCceeCeEE-CCEEE
Confidence 7899999999999999999864 5667777755432 244456788999987 77644
No 51
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.99 E-value=3.7e-09 Score=64.89 Aligned_cols=76 Identities=12% Similarity=0.201 Sum_probs=48.5
Q ss_pred hHHhhhcCCc--EEEEEcCCCchHHHHHHHHHHc----CCCcEEEEeccCC--Cc---HHHHHHHHhh---CCCCCccEE
Q 037937 3 RVRDLASKKA--AVIFTKSSCCMCHSIKTLFYEL----GASPAIHELDQDA--NG---REIEWALRAL---GCNPSVPAV 68 (102)
Q Consensus 3 ~v~~~~~~~~--v~iy~~~~Cp~C~~~~~~l~~~----~v~~~~~~vd~~~--~~---~~~~~~l~~~---~g~~tvP~i 68 (102)
.+++.++... ++.|+++|||+|+.+...|++. ++++..+|+|.+. +. .++.+..... .+..++|++
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~ 94 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTF 94 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEE
Confidence 3455555543 7789999999999988887543 5677888888653 11 1333322222 344569987
Q ss_pred --EECCEEEech
Q 037937 69 --FIGGRYVGSA 78 (102)
Q Consensus 69 --fi~g~~igg~ 78 (102)
|-||+.++..
T Consensus 95 v~~k~Gk~v~~~ 106 (122)
T TIGR01295 95 VHITDGKQVSVR 106 (122)
T ss_pred EEEeCCeEEEEE
Confidence 5688776544
No 52
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.96 E-value=2.4e-09 Score=66.53 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=37.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcH-HHHHHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGR-EIEWALR 57 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~-~~~~~l~ 57 (102)
|+||+.++||+|++|+++|++.|++|+++|+..++... ++.+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~ 47 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILR 47 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHH
Confidence 78999999999999999999999999999998776543 3444333
No 53
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.92 E-value=2.4e-09 Score=65.18 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=38.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcH-HHHHHHHh
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGR-EIEWALRA 58 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~-~~~~~l~~ 58 (102)
|++|+.++||+|++|+++|++.|++|+.+|+..++... ++.+.+..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~ 47 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSL 47 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHH
Confidence 57999999999999999999999999999998776554 35544433
No 54
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.86 E-value=1.2e-08 Score=63.39 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=37.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCc-HHHHHHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANG-REIEWALR 57 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~-~~~~~~l~ 57 (102)
|+||+.++|++|++|+++|++.|++|+.+|+..++.. .++...++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~ 47 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILR 47 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHH
Confidence 7899999999999999999999999999999877654 33544443
No 55
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.86 E-value=1e-08 Score=63.80 Aligned_cols=46 Identities=28% Similarity=0.313 Sum_probs=38.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcH-HHHHHHHh
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGR-EIEWALRA 58 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~-~~~~~l~~ 58 (102)
++||+.++|++|++|+++|++.|++|+++|+..++... ++...+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~ 48 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTK 48 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999998766543 34444433
No 56
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.85 E-value=1.1e-08 Score=62.10 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=37.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCc-HHHHHHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANG-REIEWALR 57 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~-~~~~~~l~ 57 (102)
++||+.++||+|++|+++|++.|++|+.+|+..++.. .++.+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 7899999999999999999999999999999876544 34554444
No 57
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.85 E-value=3.8e-08 Score=54.68 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=48.3
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 19 SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
+.||+|.+++.+|+.+|++|+.++++... .+...++|.+..+|+.+.++..+.++.+
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 38999999999999999999999887532 2445689999999999999988877654
No 58
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.85 E-value=6.1e-08 Score=54.18 Aligned_cols=73 Identities=10% Similarity=0.014 Sum_probs=57.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
+++|+.+.||+|.+++-+|+..|++|+.+.++..... ...+.+.+.+...++|.+..+|..+.....+.++..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGE-HKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccc-cCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 5799999999999999999999999999888764321 111235556777899999999988888888777654
No 59
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.84 E-value=4.3e-08 Score=54.90 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=56.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISL 84 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~ 84 (102)
+++|..+.||+|++++-.|+++|++|+.+.++...... ....+.+.+...++|.+..||..+.....+.++
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~-~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEH-NEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCcc-CCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 46899999999999999999999999999887643211 112355667788999999999988887777655
No 60
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.84 E-value=1.2e-08 Score=61.22 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=38.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCc-HHHHHHHHh
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANG-REIEWALRA 58 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~-~~~~~~l~~ 58 (102)
|++|+.|+|+.|++|+++|++.|++|+++|+..++-. .++.+.++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999887644 446555543
No 61
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.84 E-value=4.7e-08 Score=57.20 Aligned_cols=64 Identities=13% Similarity=0.296 Sum_probs=53.0
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 19 SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
..||||++++-.|.++|++|+.+++|....... +.+.+-...+|.+..+|..+...+.+.++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~----~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPED----LKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHH----HHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 579999999999999999999999987655432 4455566789999999999999888887754
No 62
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.82 E-value=1.1e-07 Score=52.97 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=54.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCC-CCCccEEEECCEEEechHHHHhHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGC-NPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g-~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
+.+|+.+.||+|.+++-+|+..|++|+.++++...... .+.+.+. ..++|.+..+|..+.....+.++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~----~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSE----LLLASNPVHKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCH----HHHHhCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence 36899999999999999999999999998877543222 2333444 3789999999888888887776643
No 63
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.81 E-value=3e-08 Score=60.02 Aligned_cols=59 Identities=24% Similarity=0.427 Sum_probs=40.5
Q ss_pred HhhhcCCcEEEE-EcCCCchHHHHHHHHHHcCC-----CcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 5 RDLASKKAAVIF-TKSSCCMCHSIKTLFYELGA-----SPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 5 ~~~~~~~~v~iy-~~~~Cp~C~~~~~~l~~~~v-----~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
+.+..+.++++| +.+|||+|+.++++|++... .+..+|++.. . .+...++..++|++++
T Consensus 17 ~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~---~----~l~~~~~v~~vPt~~i 81 (113)
T cd02975 17 KEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED---K----EKAEKYGVERVPTTIF 81 (113)
T ss_pred HHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC---H----HHHHHcCCCcCCEEEE
Confidence 345555556665 77999999999999987643 3445555532 2 2445578899999987
No 64
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.75 E-value=1.5e-07 Score=53.71 Aligned_cols=53 Identities=23% Similarity=0.444 Sum_probs=38.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcC----CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECC
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELG----ASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGG 72 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~----v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g 72 (102)
++++|++++|+.|..|+.+|.+.. ++++.+||+.++. +...++ ..+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~-------l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE-------LFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH-------HHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH-------HHHHhc-CCCCEEEEcC
Confidence 589999999999999999999754 3345666663221 444566 5899999999
No 65
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.75 E-value=9.2e-09 Score=76.25 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=49.1
Q ss_pred hhHHhhhcCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEec
Q 037937 2 DRVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGS 77 (102)
Q Consensus 2 ~~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg 77 (102)
++++++-++..+.+|.+++||||..+...+++..+....+..+..+. .+.. .+...++..+||++|+||+.++.
T Consensus 110 ~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~-~~~~-~~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 110 DRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG-ALFQ-DEVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred HHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc-hhCH-HHHHhcCCcccCEEEECCcEEEe
Confidence 34555556778999999999999999999987765422222222111 1111 23344677899999999986643
No 66
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.74 E-value=1.1e-08 Score=75.94 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=48.3
Q ss_pred hhHHhhhcCCcEEEEEcCCCchHHHHHHHHHHcCCC-----cEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEe
Q 037937 2 DRVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGAS-----PAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVG 76 (102)
Q Consensus 2 ~~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~-----~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~ig 76 (102)
++++++-++..+.+|.+++||||..+...+++..+. .+.+|....+ .+...++..+||++|+||+.+.
T Consensus 109 ~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~-------~~~~~~~v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 109 EQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQ-------DEVEARNIMAVPTVFLNGEEFG 181 (517)
T ss_pred HHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCH-------hHHHhcCCcccCEEEECCcEEE
Confidence 356666667789999999999999999998876543 2333322222 2334567789999999997653
No 67
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.72 E-value=2e-07 Score=51.73 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=52.6
Q ss_pred EEEEcCCCchHHHHHHHHHH--cCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE-CCEEEechHHHHhH
Q 037937 14 VIFTKSSCCMCHSIKTLFYE--LGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI-GGRYVGSAKDVISL 84 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~--~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi-~g~~igg~~~~~~~ 84 (102)
++|+.+.||+|.+++-+|.. .|++|+.+.++......+ +...+...++|.+.. ||..+.....+.++
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~----~~~~~p~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDES----LLAVNPLGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChH----HHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence 68999999999999999999 899999999885433332 344566789999985 77888777766654
No 68
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.71 E-value=6.9e-08 Score=58.59 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=38.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCC-cHHHHHHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDAN-GREIEWALR 57 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~-~~~~~~~l~ 57 (102)
.+++|+.|.|+.|++|+++|++.|++|+++|+-.++- ..++...++
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 3789999999999999999999999999999987654 444555554
No 69
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.70 E-value=1.9e-07 Score=51.57 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=54.7
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISL 84 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~ 84 (102)
++|+.+.||.|.+++.+|+..|++|+.+.++..+... ....+.+.+...++|++..+|..+.....+.++
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQ-LSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCc-CChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 5888999999999999999999999998888643211 112345566778999999999888877776655
No 70
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.69 E-value=7.4e-08 Score=53.46 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=49.5
Q ss_pred CCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE-CCEEEechHHHHhHHH
Q 037937 20 SCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI-GGRYVGSAKDVISLHV 86 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi-~g~~igg~~~~~~~~~ 86 (102)
.||||+++.-+|+.+|++|+...+...+........+.+.++..+||.+.. +|+.+.....+.++.+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 599999999999999999998777442222111123556678889999998 8999999988888764
No 71
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.69 E-value=5e-07 Score=50.38 Aligned_cols=71 Identities=11% Similarity=0.018 Sum_probs=56.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
++++|+.+.|+.|.+++-+|+..|++|+.+.++.+ +..+.+...+...++|.+..||..+.....+..+..
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE----EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLG 71 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH----HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 35788989999999999999999999999988752 122345556677899999999999988887777653
No 72
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.65 E-value=5.6e-08 Score=54.85 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=37.1
Q ss_pred cEEEEEcCCCchHHHHHHHH----HHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLF----YELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRY 74 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l----~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~ 74 (102)
+|.+ ..++||+|.++.+++ .+.+++++.+++ .+..+ + ..+|..++|.++|||+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~----~-~~ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEE----I-EKYGVMSVPALVINGKV 59 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHH----H-HHTT-SSSSEEEETTEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHH----H-HHcCCCCCCEEEECCEE
Confidence 4667 567799999877765 455666666665 23332 3 34688999999999984
No 73
>PHA02278 thioredoxin-like protein
Probab=98.63 E-value=4.4e-07 Score=54.18 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=44.1
Q ss_pred HHhhhcCC--cEEEEEcCCCchHHHHHHHHHHcC------CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCE
Q 037937 4 VRDLASKK--AAVIFTKSSCCMCHSIKTLFYELG------ASPAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGR 73 (102)
Q Consensus 4 v~~~~~~~--~v~iy~~~~Cp~C~~~~~~l~~~~------v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~ 73 (102)
+++.++.. -++.|+++||+.|+.+...|++.. +++..+|+|.++... ..+....+..++|++ |-||+
T Consensus 7 ~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~---~~l~~~~~I~~iPT~i~fk~G~ 83 (103)
T PHA02278 7 LNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDR---EKAVKLFDIMSTPVLIGYKDGQ 83 (103)
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccccc---HHHHHHCCCccccEEEEEECCE
Confidence 34444433 366689999999999998886642 345566666543211 124444577888987 56888
Q ss_pred EE
Q 037937 74 YV 75 (102)
Q Consensus 74 ~i 75 (102)
.+
T Consensus 84 ~v 85 (103)
T PHA02278 84 LV 85 (103)
T ss_pred EE
Confidence 65
No 74
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.62 E-value=6.3e-07 Score=50.19 Aligned_cols=63 Identities=10% Similarity=0.106 Sum_probs=51.3
Q ss_pred EEEEEcC-------CCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 13 AVIFTKS-------SCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 13 v~iy~~~-------~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
+++|..+ .||+|.+++.+|+..|++|+.++++.. ..+...++|.+..||+.+.+...+.++.
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 4677777 579999999999999999998887642 2345678999999999999888877765
Q ss_pred H
Q 037937 86 V 86 (102)
Q Consensus 86 ~ 86 (102)
.
T Consensus 71 ~ 71 (75)
T cd03080 71 E 71 (75)
T ss_pred H
Confidence 3
No 75
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.1e-07 Score=55.81 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=67.4
Q ss_pred CcEEEEEcCCCchHH------HHHHHHHHcCCCcEEEEeccCCCcHH-----HHHHHHhhCCCCCccEEEECCEEEechH
Q 037937 11 KAAVIFTKSSCCMCH------SIKTLFYELGASPAIHELDQDANGRE-----IEWALRALGCNPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~------~~~~~l~~~~v~~~~~~vd~~~~~~~-----~~~~l~~~~g~~tvP~ifi~g~~igg~~ 79 (102)
..+.+|+++.-+.-. ++..+|+...+.++.+|+...+..+. +....+...|.+..|+||-++++.|+++
T Consensus 2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye 81 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYE 81 (108)
T ss_pred CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHH
Confidence 356778776655543 67778999999999999987765543 2333445678889999999999999999
Q ss_pred HHHhHHHcCcHHHHHHh
Q 037937 80 DVISLHVDGSLKQMLID 96 (102)
Q Consensus 80 ~~~~~~~~g~L~~~l~~ 96 (102)
.+.+..+++.|.+.|+=
T Consensus 82 ~F~ea~E~ntl~eFL~l 98 (108)
T KOG4023|consen 82 LFFEAVEQNTLQEFLGL 98 (108)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 99999999999998863
No 76
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.60 E-value=8.1e-08 Score=64.00 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=40.3
Q ss_pred hcCCcEEEEEcCCCchHHHHHHHHHHcC-----CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCE
Q 037937 8 ASKKAAVIFTKSSCCMCHSIKTLFYELG-----ASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGR 73 (102)
Q Consensus 8 ~~~~~v~iy~~~~Cp~C~~~~~~l~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~ 73 (102)
-++..|++|+.+|||+|+.++.++++.. +.+..+|++. .. .+....|..++|++++++.
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~--~~-----~~~~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE--NP-----DLAEKYGVMSVPKIVINKG 195 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC--CH-----HHHHHhCCccCCEEEEecC
Confidence 3344677899999999999999988754 3333344433 22 2334468899999998764
No 77
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=98.57 E-value=4.4e-07 Score=60.10 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=54.3
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE-ECCEEEechHHHHhHHHc
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVF-IGGRYVGSAKDVISLHVD 87 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if-i~g~~igg~~~~~~~~~~ 87 (102)
++|+.+.||+|++++-+|+.+|++|+.++++..+... . .+.++..++|++. .||..+.+...+.++..+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~----~-~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEET----P-IRMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchh----H-HHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 3688999999999999999999999998876543221 1 2345567899997 788899999888887653
No 78
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.56 E-value=4.9e-07 Score=51.60 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=51.0
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEEC-CEEEechHHHHhHHH
Q 037937 19 SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIG-GRYVGSAKDVISLHV 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~-g~~igg~~~~~~~~~ 86 (102)
++||+|.+++.+|...|++|+.+.++..... .....+ ..++..++|.+..+ |..+.+...+.++..
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~-~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIP-PILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcc-cccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 6899999999999999999999888754322 112233 45667899999988 888988888877654
No 79
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.55 E-value=8.4e-07 Score=49.11 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=54.8
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
++|..+.|+.|.+++-+|+..|++|+.+.++...... ..+...+...++|.+..+|..+.....+.++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~---~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPE---LDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhh---hhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence 6888899999999999999999999999887532211 22455677789999999999888877776653
No 80
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=98.54 E-value=4.7e-07 Score=55.27 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=39.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcH-HHHHHHHh
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGR-EIEWALRA 58 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~-~~~~~l~~ 58 (102)
.|++|+.|.|..|++|+++|++.|++|+++++..++-.. ++.+.++.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~ 49 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSK 49 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHH
Confidence 489999999999999999999999999999988776544 45544443
No 81
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.54 E-value=2.2e-07 Score=69.56 Aligned_cols=65 Identities=14% Similarity=0.253 Sum_probs=47.7
Q ss_pred hHHhhhcCCcEEEEEcCCCchHHHHHHHHHHc-----CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEE
Q 037937 3 RVRDLASKKAAVIFTKSSCCMCHSIKTLFYEL-----GASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRY 74 (102)
Q Consensus 3 ~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~-----~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~ 74 (102)
+++++-++..|.+|..++||+|..+.+.+++. +++.+.+|+...++ +...++..+||.++|||+.
T Consensus 470 ~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~-------~~~~~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 470 KIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD-------LKDEYGIMSVPAIVVDDQQ 539 (555)
T ss_pred HHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH-------HHHhCCceecCEEEECCEE
Confidence 45555556679999999999999888876543 46667777765432 3334688999999999964
No 82
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.52 E-value=7.3e-07 Score=54.20 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=39.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCC----cEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEEe
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGAS----PAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYVG 76 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~----~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~ig 76 (102)
-|+-|+.+|||.|+.+...|++..-+ ...+.||.+... .+....+..++|++ |-||+.++
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~-----~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP-----DFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH-----HHHHHcCCCCCCEEEEEECCEEEE
Confidence 35569999999999999998765322 233344433332 24445678889987 56888763
No 83
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.52 E-value=1.7e-06 Score=48.89 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=54.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEEC---CEEEechHHHHhHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIG---GRYVGSAKDVISLHV 86 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~---g~~igg~~~~~~~~~ 86 (102)
+++|+.+. |+|.+++.+|+..|++|+.+.++..... ...+.+...+...++|.+..+ |..+.....+.++..
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGE-QKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCc-ccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence 57899886 9999999999999999999888753211 111234455667899999887 788888777776643
No 84
>PRK10026 arsenate reductase; Provisional
Probab=98.51 E-value=6.5e-07 Score=56.29 Aligned_cols=48 Identities=13% Similarity=0.247 Sum_probs=40.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCC-CcHHHHHHHHh
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDA-NGREIEWALRA 58 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~-~~~~~~~~l~~ 58 (102)
..++||+.|.|+.|++|+++|++.|++|+++|+-.++ ...+++..++.
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~ 50 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIAD 50 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHh
Confidence 4689999999999999999999999999999987765 44556665554
No 85
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.50 E-value=1.2e-06 Score=51.72 Aligned_cols=66 Identities=20% Similarity=0.163 Sum_probs=38.1
Q ss_pred HHhhhcCCc--EEEEEcCCCchHHHHHHHH-------HHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 4 VRDLASKKA--AVIFTKSSCCMCHSIKTLF-------YELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 4 v~~~~~~~~--v~iy~~~~Cp~C~~~~~~l-------~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
+.+++++++ ++.|+.+||++|++....+ +.++-.+..+.+|.+.+.... ..+....+..++|++++
T Consensus 4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 4 LAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEI-TALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHH-HHHHHHcCCCCCCEEEE
Confidence 455556665 5679999999999887554 122213444444433222111 23444457789998753
No 86
>PRK10387 glutaredoxin 2; Provisional
Probab=98.49 E-value=1.1e-06 Score=57.70 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=54.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE-EECCEEEechHHHHhHHHc
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAV-FIGGRYVGSAKDVISLHVD 87 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i-fi~g~~igg~~~~~~~~~~ 87 (102)
+++|+.+.||+|.+++-+|+.+|++|+.++++..+... . ....+..+||++ ..||..+.....+.++..+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~----~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT----P-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh----H-HHhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence 36899999999999999999999999998886443221 1 234556799999 4688888888888777643
No 87
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.48 E-value=2.8e-06 Score=47.47 Aligned_cols=72 Identities=7% Similarity=0.037 Sum_probs=55.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
+++|+.+.+|+|++++-+|+..|++|+.+.++..+... ..+.+...+...++|.+..+|..+....-+..+.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl 72 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQ-LTPEFKKINPFGKVPAIVDGDFTLAESVAILRYL 72 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCc-CCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 36899999999999999999999999998887543211 1123445566789999998888887777666654
No 88
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=98.48 E-value=7.9e-07 Score=54.93 Aligned_cols=46 Identities=9% Similarity=0.195 Sum_probs=37.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCC-cHHHHHHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDAN-GREIEWALR 57 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~-~~~~~~~l~ 57 (102)
.+++|+.|.|..|++|+++|++.|++|+++|+-.++- ..+++..+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFG 48 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHH
Confidence 4789999999999999999999999999999876543 344554444
No 89
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=98.47 E-value=2.4e-06 Score=56.48 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=56.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
.+++|+.+.||+|.+++-+|++.|++|+.+.++...... .+...+...+||++..||..+-...-+.++.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~----~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL 79 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQ----DLIDLNPYQSVPTLVDRELTLYESRIIMEYL 79 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCH----HHHHhCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 478999999999999999999999999999998643322 3444566689999999998887777776654
No 90
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.47 E-value=9.6e-07 Score=61.01 Aligned_cols=69 Identities=22% Similarity=0.366 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
.++++|-...||||-+++++|+=.|++|.+++|+.-. + ..+ +.+..+.||.+.+.|+..-..+-++.+.
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~--r---~eI-k~SsykKVPil~~~Geqm~dSsvIIs~l 157 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL--R---QEI-KWSSYKKVPILLIRGEQMVDSSVIISLL 157 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchh--h---hhc-cccccccccEEEeccceechhHHHHHHH
Confidence 3799999999999999999999999999999997432 1 222 3456789999999988766655554443
No 91
>PRK10853 putative reductase; Provisional
Probab=98.47 E-value=6.3e-07 Score=54.77 Aligned_cols=46 Identities=9% Similarity=0.208 Sum_probs=38.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCC-CcHHHHHHHHh
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDA-NGREIEWALRA 58 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~-~~~~~~~~l~~ 58 (102)
+++|+.+.|..|++|+++|++.|++|+++|+-..+ ...++.+.+..
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~ 48 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDE 48 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHH
Confidence 78999999999999999999999999999987765 44455555543
No 92
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=98.46 E-value=7.1e-07 Score=54.15 Aligned_cols=46 Identities=15% Similarity=0.319 Sum_probs=38.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCc-HHHHHHHHh
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANG-REIEWALRA 58 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~-~~~~~~l~~ 58 (102)
|++|+.+.|+.|++|+++|++.|++|+.+|+...+-. .++...++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~ 47 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAK 47 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHH
Confidence 5799999999999999999999999999998876544 445555544
No 93
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=98.45 E-value=7.8e-07 Score=53.80 Aligned_cols=46 Identities=22% Similarity=0.334 Sum_probs=37.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCC-CcHHHHHHHHh
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDA-NGREIEWALRA 58 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~-~~~~~~~~l~~ 58 (102)
+++|+.+.|+.|++|+++|++.+++|+++|+-..+ ...++...+..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~ 47 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAK 47 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHH
Confidence 57999999999999999999999999999987765 44445554443
No 94
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.44 E-value=1.2e-06 Score=58.30 Aligned_cols=65 Identities=23% Similarity=0.345 Sum_probs=44.2
Q ss_pred hhhcCCcEEEEEc---CCCchHHHHHHHHHHcC-----CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE--CCEEE
Q 037937 6 DLASKKAAVIFTK---SSCCMCHSIKTLFYELG-----ASPAIHELDQDANGREIEWALRALGCNPSVPAVFI--GGRYV 75 (102)
Q Consensus 6 ~~~~~~~v~iy~~---~~Cp~C~~~~~~l~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi--~g~~i 75 (102)
++.+...+++|+. +|||+|+.+..++++.. +++..+++|.+... .+....+..++|++.+ ||+.+
T Consensus 16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~-----~l~~~~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK-----EEAEKYGVERVPTTIILEEGKDG 90 (215)
T ss_pred hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH-----HHHHHcCCCccCEEEEEeCCeee
Confidence 3444557889988 99999999999997763 23345666644332 3455568889999865 65443
No 95
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=98.44 E-value=2.7e-06 Score=47.56 Aligned_cols=70 Identities=11% Similarity=-0.036 Sum_probs=53.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEEC-CEEEechHHHHhHH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIG-GRYVGSAKDVISLH 85 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~-g~~igg~~~~~~~~ 85 (102)
++|+.+.||+|.+++-+|+..|++|+.+.++...... .+.+...+...++|.+..+ |..+....-+.++.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~--~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL 72 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENK--TPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYV 72 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccC--CHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHH
Confidence 4789999999999999999999999999888643211 1234555677899999984 77777666666554
No 96
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.41 E-value=2.5e-06 Score=49.96 Aligned_cols=65 Identities=12% Similarity=0.214 Sum_probs=41.8
Q ss_pred HHhhhcCCcEEEEEcCCCchHHHHHHHHHHcC-----CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE--CCE
Q 037937 4 VRDLASKKAAVIFTKSSCCMCHSIKTLFYELG-----ASPAIHELDQDANGREIEWALRALGCNPSVPAVFI--GGR 73 (102)
Q Consensus 4 v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi--~g~ 73 (102)
++++++...++.|+.+|||+|+.....|++.. ..+....+|.+... .+....+..++|++++ +|+
T Consensus 11 f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~-----~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 11 WTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP-----GLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred HHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH-----hHHHHcCCcccCEEEEeCCCC
Confidence 45566677788999999999999988886542 22333344433222 1333456788998864 554
No 97
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.40 E-value=2.6e-06 Score=50.50 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=38.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCC---CcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--ECCEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGA---SPAIHELDQDANGREIEWALRALGCNPSVPAVF--IGGRYV 75 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v---~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if--i~g~~i 75 (102)
-++.|+.+||+.|+.....|++..- ....+.+|.+... +. ..+....+...+|+++ -||+.+
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-~~-~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-ST-MELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-HH-HHHHHHcCCCcCCEEEEEeCCeEE
Confidence 4667999999999999888865421 2234444433322 11 1344445778899764 488754
No 98
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.38 E-value=2.7e-06 Score=47.95 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=39.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHH-----cCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE--CCEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYE-----LGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI--GGRYV 75 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~-----~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi--~g~~i 75 (102)
-+++|+++||++|+.+...+++ .++.+..++.+.... +....+...+|++++ +|+.+
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE-------LAEEYGVRSIPTFLFFKNGKEV 76 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChh-------HHHhcCcccccEEEEEECCEEE
Confidence 4778999999999999999977 455555556554221 223346678999765 77743
No 99
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.38 E-value=3.8e-06 Score=50.78 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=43.5
Q ss_pred HHhhhcCC--cEEEEEcCCCchHHHHHHHHHHcCC---CcEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEEe
Q 037937 4 VRDLASKK--AAVIFTKSSCCMCHSIKTLFYELGA---SPAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYVG 76 (102)
Q Consensus 4 v~~~~~~~--~v~iy~~~~Cp~C~~~~~~l~~~~v---~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~ig 76 (102)
+.+.+++. -++.|+.+||+.|+.+...|++..- ....+.||.+... .+.+..+..++|++ |-+|+.++
T Consensus 15 ~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~-----~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 15 FFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAP-----FLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred HHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCH-----HHHHHCCCccCCEEEEEECCEEEE
Confidence 34444433 3567888999999999988876421 2344555544332 13344577889987 56897664
Q ss_pred ch
Q 037937 77 SA 78 (102)
Q Consensus 77 g~ 78 (102)
..
T Consensus 90 ~~ 91 (113)
T cd02989 90 RI 91 (113)
T ss_pred EE
Confidence 43
No 100
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.36 E-value=1.4e-06 Score=45.32 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=39.0
Q ss_pred EEEEEcCCCchHHHHHHHHHH-----cCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECC
Q 037937 13 AVIFTKSSCCMCHSIKTLFYE-----LGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGG 72 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~-----~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g 72 (102)
+++|+.++||+|.++...+.+ .++.+..++++....... . ....+..++|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEK---E-LKRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhh---H-HHhCCCccccEEEEEe
Confidence 468999999999999999994 455666666665443321 1 1234567899998766
No 101
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=98.34 E-value=9e-06 Score=45.07 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=53.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISL 84 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~ 84 (102)
.+|+.+.+|+|.+++-+|++.|++|+.++++..... ...+.+.+.+...++|.+..+|..+.....+.++
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~-~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGG-LDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEecccccc-ccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence 589999999999999999999999999888753221 1112344556778999999999888777666554
No 102
>PRK09381 trxA thioredoxin; Provisional
Probab=98.33 E-value=4.1e-06 Score=49.76 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=39.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHc----CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--ECCEEEech
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYEL----GASPAIHELDQDANGREIEWALRALGCNPSVPAVF--IGGRYVGSA 78 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~----~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if--i~g~~igg~ 78 (102)
-++.|+++|||.|+.+...|++. +-.+....+|.+.... +....+..++|+++ -+|+.++.+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~-----~~~~~~v~~~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-----TAPKYGIRGIPTLLLFKNGEVAATK 91 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh-----HHHhCCCCcCCEEEEEeCCeEEEEe
Confidence 46779999999999998887643 2223444444433321 22335778999885 488876433
No 103
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2e-06 Score=48.24 Aligned_cols=69 Identities=13% Similarity=0.226 Sum_probs=48.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCc-HH---HH---HHHH--hhCCCCCccEEEECC-EEEechHHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANG-RE---IE---WALR--ALGCNPSVPAVFIGG-RYVGSAKDVI 82 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~-~~---~~---~~l~--~~~g~~tvP~ifi~g-~~igg~~~~~ 82 (102)
-++|++..||.|..+.+.|++.+++|++++|..+-.. .+ +| .++. +..|.-.+|.+..++ +.|=| +++.
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-~Dl~ 82 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-DDLS 82 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-chhh
Confidence 3899999999999999999999999999999865322 11 11 1111 125677899998655 44444 4443
No 104
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=98.30 E-value=8.8e-06 Score=45.47 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=52.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEEC-CEEEechHHHHhHH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIG-GRYVGSAKDVISLH 85 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~-g~~igg~~~~~~~~ 85 (102)
.+|+.+.| .|.+++.+|...|++|+.++++..... ...+.+.+.+...++|.+..+ |..+.....+.++.
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL 72 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKT-QKGADYLAINPKGQVPALVLDDGEVLTESAAILQYL 72 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCc-cCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHH
Confidence 57888876 488999999999999999888865421 111234556778899999887 78787777776664
No 105
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.29 E-value=3.4e-06 Score=49.29 Aligned_cols=60 Identities=18% Similarity=0.360 Sum_probs=37.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHc----CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--ECCEEEec
Q 037937 13 AVIFTKSSCCMCHSIKTLFYEL----GASPAIHELDQDANGREIEWALRALGCNPSVPAVF--IGGRYVGS 77 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~----~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if--i~g~~igg 77 (102)
++.|+.+||+.|+.+...+++. +-.+....+|.+... .+....+..++|+++ -+|+.++.
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~-----~l~~~~~v~~vPt~~i~~~g~~v~~ 82 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ-----EIAEAAGIMGTPTVQFFKDKELVKE 82 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH-----HHHHHCCCeeccEEEEEECCeEEEE
Confidence 6678999999999999888652 212344444443332 133335678899875 47776533
No 106
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.27 E-value=2.5e-06 Score=51.37 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=42.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCC---cEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEEechHHHHh
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGAS---PAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYVGSAKDVIS 83 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~---~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~igg~~~~~~ 83 (102)
++.|+.+||+.|+.+...|++..-. .....+|.+.. + +.+..+..++|++ |-+|+.++.......
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~----l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~ 97 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--F----LVNYLDIKVLPTLLVYKNGELIDNIVGFEE 97 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--H----HHHhcCCCcCCEEEEEECCEEEEEEecHHH
Confidence 5579999999999999888764322 23344443322 2 3444577889977 679987755544333
No 107
>PRK10996 thioredoxin 2; Provisional
Probab=98.25 E-value=1e-05 Score=50.53 Aligned_cols=67 Identities=18% Similarity=0.328 Sum_probs=42.5
Q ss_pred HHhhhcCC--cEEEEEcCCCchHHHHHHHHHHc----CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--ECCEEE
Q 037937 4 VRDLASKK--AAVIFTKSSCCMCHSIKTLFYEL----GASPAIHELDQDANGREIEWALRALGCNPSVPAVF--IGGRYV 75 (102)
Q Consensus 4 v~~~~~~~--~v~iy~~~~Cp~C~~~~~~l~~~----~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if--i~g~~i 75 (102)
++++++.. -++.|+.+||+.|+.....|.+. +-.+..+.+|.+... .+....+..++|+++ -+|+.+
T Consensus 45 ~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-----~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 45 LDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER-----ELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred HHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH-----HHHHhcCCCccCEEEEEECCEEE
Confidence 34444433 36779999999999988777553 333455555544332 233445778899874 488755
No 108
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.2e-06 Score=55.66 Aligned_cols=69 Identities=17% Similarity=0.284 Sum_probs=55.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE-ECCEEEechHHHHhHHHc
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVF-IGGRYVGSAKDVISLHVD 87 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if-i~g~~igg~~~~~~~~~~ 87 (102)
.+|....||||.+|+.++.-+++|++..-++.+++.... ++-|++.||.+. -+|++.+..-|+.++..+
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~-----rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~ 71 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPI-----RMIGQKQVPILQKEDGRAMPESLDIVHYVDE 71 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCcccChh-----hhhcccccceEEccccccchhhhHHHHHHHH
Confidence 478889999999999999999999998888776655432 235889999987 578899888888777643
No 109
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.4e-06 Score=53.97 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=40.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCC----cEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGAS----PAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYV 75 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~----~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~i 75 (102)
++.|+.+||..|+.....|+++--+ +....+|.++..+ +...++...+|++ |.||+.+
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-----la~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-----LAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-----hHhhcceeeeeEEEEEECCEEe
Confidence 6679999999999999999876433 2334444443332 4445788899987 6799765
No 110
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.21 E-value=6.5e-06 Score=50.16 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=38.6
Q ss_pred hHHhhhcCC---cEEEEEcCCCchHHHHHHHHH-------Hc--CCCcEEEEeccCCCcH------HHHHHHHhhCCCCC
Q 037937 3 RVRDLASKK---AAVIFTKSSCCMCHSIKTLFY-------EL--GASPAIHELDQDANGR------EIEWALRALGCNPS 64 (102)
Q Consensus 3 ~v~~~~~~~---~v~iy~~~~Cp~C~~~~~~l~-------~~--~v~~~~~~vd~~~~~~------~~~~~l~~~~g~~t 64 (102)
.++++.+.. -++.|+.+|||+|++....+. .+ ++.+-.++++.+.... .-...+....+..+
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 345555555 366799999999998876542 12 2333344444331100 00123445567788
Q ss_pred ccEE-EECC
Q 037937 65 VPAV-FIGG 72 (102)
Q Consensus 65 vP~i-fi~g 72 (102)
+|++ |+++
T Consensus 85 ~Pt~~~~~~ 93 (125)
T cd02951 85 TPTVIFLDP 93 (125)
T ss_pred ccEEEEEcC
Confidence 9986 4553
No 111
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.7e-05 Score=53.58 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=60.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHc
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVD 87 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~ 87 (102)
..|.+|+.-.|||.+|++-.|+.+||+|+++++|-..... + .++...-+..||.+..||+.|+-.-.+.++.++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~-~--ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe 81 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSE-W--LLEKNPVHKKVPVLEHNGKPICESLIIVEYIDE 81 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCH-H--HHHhccccccCCEEEECCceehhhHHHHHHHHh
Confidence 5699999999999999999999999999999998765332 1 234443678999999999999888888777653
No 112
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.18 E-value=1.1e-05 Score=48.00 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=39.8
Q ss_pred HHhhhcCCc--EEEEEcCCCchHHHHHHHHHHcCC----------CcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--
Q 037937 4 VRDLASKKA--AVIFTKSSCCMCHSIKTLFYELGA----------SPAIHELDQDANGREIEWALRALGCNPSVPAVF-- 69 (102)
Q Consensus 4 v~~~~~~~~--v~iy~~~~Cp~C~~~~~~l~~~~v----------~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if-- 69 (102)
+++.+++.+ ++.|+.+||++|++....+++..- ......+|-+... .+....|..++|+++
T Consensus 11 f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-----~l~~~~~v~~~Ptl~~~ 85 (108)
T cd02996 11 IDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-----DIADRYRINKYPTLKLF 85 (108)
T ss_pred HHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-----HHHHhCCCCcCCEEEEE
Confidence 344555444 567999999999999888854311 1333344433332 234445788999874
Q ss_pred ECCE
Q 037937 70 IGGR 73 (102)
Q Consensus 70 i~g~ 73 (102)
-+|+
T Consensus 86 ~~g~ 89 (108)
T cd02996 86 RNGM 89 (108)
T ss_pred eCCc
Confidence 5665
No 113
>PTZ00051 thioredoxin; Provisional
Probab=98.18 E-value=2.5e-05 Score=45.34 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=41.9
Q ss_pred HHhhhcCCc--EEEEEcCCCchHHHHHHHHHHcCC---CcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--ECCEEEe
Q 037937 4 VRDLASKKA--AVIFTKSSCCMCHSIKTLFYELGA---SPAIHELDQDANGREIEWALRALGCNPSVPAVF--IGGRYVG 76 (102)
Q Consensus 4 v~~~~~~~~--v~iy~~~~Cp~C~~~~~~l~~~~v---~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if--i~g~~ig 76 (102)
++++++.++ ++.|+.+||+.|+.....|.+..- ......+|.+... .+....+..++|+++ -+|+.++
T Consensus 11 ~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 11 FESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS-----EVAEKENITSMPTFKVFKNGSVVD 85 (98)
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH-----HHHHHCCCceeeEEEEEeCCeEEE
Confidence 445555554 567999999999999888866421 2344444443222 233445668889774 5776553
No 114
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.18 E-value=1.6e-05 Score=48.40 Aligned_cols=60 Identities=18% Similarity=0.392 Sum_probs=36.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHc------CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE-E--CCEEEe
Q 037937 13 AVIFTKSSCCMCHSIKTLFYEL------GASPAIHELDQDANGREIEWALRALGCNPSVPAVF-I--GGRYVG 76 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~------~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if-i--~g~~ig 76 (102)
++.|+.+||++|+.....+.+. ...+..++++.+++.. .+.+...+ ..+|+++ + +|+.++
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~--~~~~~~~g--~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPK--DEEFSPDG--GYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCch--hhhcccCC--CccceEEEECCCCCCch
Confidence 5568999999999998887652 3456677777654322 12221111 2488774 4 555543
No 115
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.17 E-value=3.5e-05 Score=42.89 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=50.3
Q ss_pred cCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhH
Q 037937 18 KSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISL 84 (102)
Q Consensus 18 ~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~ 84 (102)
...||+|++++-+|+..|++|+.+.++...... ...+.+.+....+|.+..+|..+.....+.++
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~--~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDT--RARILEFSPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccc--cHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence 357999999999999999999998887543211 13455667778999999999888877766654
No 116
>PRK15113 glutathione S-transferase; Provisional
Probab=98.17 E-value=2.9e-05 Score=51.45 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=55.7
Q ss_pred CcEEEEEcC--CCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 11 KAAVIFTKS--SCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 11 ~~v~iy~~~--~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
..+++|+.+ .||+|++++-+|++.|++|+.+.++..... ...+.+.+.+....||++..||..+-...-+.++.
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~-~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGE-HLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCcc-ccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 457899975 799999999999999999999988864321 11123455666789999999998877766665553
No 117
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=98.17 E-value=2e-05 Score=53.52 Aligned_cols=64 Identities=9% Similarity=0.156 Sum_probs=53.2
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 19 SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
+.||+|++++-.|..+|++|+.+.+|...... .+.+.+...++|++..+|..+.....+.++..
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~----~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPE----DLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCH----HHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 57999999999999999999999998765433 34455666899999999999999888888765
No 118
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.16 E-value=2.3e-05 Score=45.50 Aligned_cols=60 Identities=25% Similarity=0.342 Sum_probs=41.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHc----CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--ECCEEEe
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYEL----GASPAIHELDQDANGREIEWALRALGCNPSVPAVF--IGGRYVG 76 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~----~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if--i~g~~ig 76 (102)
-++.|+++||++|+.....|.+. +-++....+|.+... .+.+..+...+|+++ -+|+.+.
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK-----ELCKKYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH-----HHHHHTTCSSSSEEEEEETTEEEE
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhccc-----hhhhccCCCCCCEEEEEECCcEEE
Confidence 36779999999999999888543 325666666655442 244445778899884 5776653
No 119
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.15 E-value=1.1e-05 Score=46.67 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=38.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHc----CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYEL----GASPAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYV 75 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~----~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~i 75 (102)
++.|+.+||+.|+++...|++. ...+..+.+|.+... .+....+..++|++ |.+|+.+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~-----~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP-----EISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH-----HHHHhcCCccccEEEEEECCEEE
Confidence 6679999999999998888653 234555666554332 23344567889966 5677654
No 120
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=4.6e-06 Score=57.96 Aligned_cols=61 Identities=25% Similarity=0.269 Sum_probs=45.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCC----c--EEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEEechH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGAS----P--AIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYVGSAK 79 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~----~--~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~igg~~ 79 (102)
-++.|+.|||+.|+.....|++.-.. + -.+|+|..+. +....|..++|+| |++|+.|-||.
T Consensus 46 VlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-------vAaqfgiqsIPtV~af~dGqpVdgF~ 114 (304)
T COG3118 46 VLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-------VAAQFGVQSIPTVYAFKDGQPVDGFQ 114 (304)
T ss_pred eEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-------HHHHhCcCcCCeEEEeeCCcCccccC
Confidence 35678999999999999999876433 3 3455554433 3344588999988 79999998885
No 121
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=98.14 E-value=3.4e-05 Score=42.76 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=53.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
.+|+.+. +.|.+++-+|+..|++|+.+.++...... ....+.+.+...++|.+..+|..+.....+.++..
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQ-APPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCcc-CCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 5777775 77999999999999999998887542111 01234455677899999999999988888877653
No 122
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.14 E-value=1.2e-05 Score=47.81 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHc-------CCCcEEEEeccCCCcH---------------HHHHHHHhhCCCCCccE
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYEL-------GASPAIHELDQDANGR---------------EIEWALRALGCNPSVPA 67 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~-------~v~~~~~~vd~~~~~~---------------~~~~~l~~~~g~~tvP~ 67 (102)
...+++|+.+|||+|+++.+.+.+. .-.+..+.++.+.... .....+.+..|...+|+
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt 85 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPT 85 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCE
Confidence 3458889999999999987776531 1134444444332211 11234556668889999
Q ss_pred EEE-C--CE---EEechHHH
Q 037937 68 VFI-G--GR---YVGSAKDV 81 (102)
Q Consensus 68 ifi-~--g~---~igg~~~~ 81 (102)
+++ | |+ .+.|+-.-
T Consensus 86 ~~~~d~~G~~v~~~~G~~~~ 105 (112)
T PF13098_consen 86 IVFLDKDGKIVYRIPGYLSP 105 (112)
T ss_dssp EEECTTTSCEEEEEESS--H
T ss_pred EEEEcCCCCEEEEecCCCCH
Confidence 864 4 66 44565433
No 123
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.13 E-value=1.3e-05 Score=48.46 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=43.7
Q ss_pred CCcEEEEEcCC--CchHHHHHHHHHHcCCCc----EEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEEech
Q 037937 10 KKAAVIFTKSS--CCMCHSIKTLFYELGASP----AIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYVGSA 78 (102)
Q Consensus 10 ~~~v~iy~~~~--Cp~C~~~~~~l~~~~v~~----~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~igg~ 78 (102)
...|+.|+.+| ||.|+.+..+|++..-+| ....++.+... .+....+..++|++ |-||+.++..
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-----~la~~f~V~sIPTli~fkdGk~v~~~ 99 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-----ALAARFGVLRTPALLFFRDGRYVGVL 99 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-----HHHHHcCCCcCCEEEEEECCEEEEEE
Confidence 44577888886 999999999997654433 33344444332 24555688999987 5699887554
No 124
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.12 E-value=2.9e-05 Score=44.97 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=39.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcC----CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--ECCEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELG----ASPAIHELDQDANGREIEWALRALGCNPSVPAVF--IGGRYV 75 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~----v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if--i~g~~i 75 (102)
-++.|+.+||+.|+.....+.+.. -.+....+|.+... .+.+..+..++|+++ -+|+.+
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-----QIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-----HHHHHcCCCCCCEEEEEeCCEEe
Confidence 367799999999999988886543 23444555554432 244445778899885 577654
No 125
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.12 E-value=7.4e-06 Score=50.14 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=33.9
Q ss_pred EEEEEc-------CCCchHHHHHHHHHH----cC--CCcEEEEeccCCCcHHHHHHHHhhCCCC-CccEEEE
Q 037937 13 AVIFTK-------SSCCMCHSIKTLFYE----LG--ASPAIHELDQDANGREIEWALRALGCNP-SVPAVFI 70 (102)
Q Consensus 13 v~iy~~-------~~Cp~C~~~~~~l~~----~~--v~~~~~~vd~~~~~~~~~~~l~~~~g~~-tvP~ifi 70 (102)
++.|+. +|||.|+.+...|++ .. +.+-.+|++..+...+....++...+.. ++|++.+
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 667888 899999988777644 33 3444555554331111012244444555 8998853
No 126
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.11 E-value=9.2e-06 Score=48.00 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=35.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCC---cEEEEeccCCCcHHHHHHHHhhCCCCCccEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGAS---PAIHELDQDANGREIEWALRALGCNPSVPAVF 69 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~---~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if 69 (102)
-++.|+.+||++|++....|++..-. ...+.+|.+.... .+.+..+..++|+++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCCeecCEEE
Confidence 36779999999999999888665322 3344555442222 244446778899875
No 127
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.10 E-value=3.5e-05 Score=44.13 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=39.3
Q ss_pred HHhhhcCC--cEEEEEcCCCchHHHHHHHHHHc------CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE
Q 037937 4 VRDLASKK--AAVIFTKSSCCMCHSIKTLFYEL------GASPAIHELDQDANGREIEWALRALGCNPSVPAVF 69 (102)
Q Consensus 4 v~~~~~~~--~v~iy~~~~Cp~C~~~~~~l~~~------~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if 69 (102)
+.+++.+. -+++|+++||++|+++...+.+. +-.+....++.+.. ..+.+..+...+|+++
T Consensus 8 ~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 8 FDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-----NDLCSEYGVRGYPTIK 76 (101)
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-----HHHHHhCCCCCCCEEE
Confidence 34444444 57789999999999998887553 23345555554332 2344446778999885
No 128
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.09 E-value=2.9e-05 Score=46.34 Aligned_cols=57 Identities=18% Similarity=0.370 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHcC-----CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYELG-----ASPAIHELDQDANGREIEWALRALGCNPSVPAVF 69 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if 69 (102)
..-++.|+.+|||+|++....+.+.. -.+....++.+.+... ...+..+...+|+++
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~---~~~~~~~v~~~Pti~ 83 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQRE---FAKEELQLKSFPTIL 83 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchh---hHHhhcCCCcCCEEE
Confidence 34577899999999999988886542 1234444444332221 122335778899884
No 129
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.09 E-value=6.4e-06 Score=53.49 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=48.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCC---cEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEEe---chHH-HHh
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGAS---PAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYVG---SAKD-VIS 83 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~---~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~ig---g~~~-~~~ 83 (102)
|+-|+.+|||.|+.+...|+++.-+ ...+.|+.+.. + +....+..++|++ |.||+.++ |+++ .-.
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~----l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~ 160 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--G----ASDEFDTDALPALLVYKGGELIGNFVRVTEDLGE 160 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--h----hHHhCCCCCCCEEEEEECCEEEEEEechHHhcCC
Confidence 5558899999999888887655322 34444444322 2 3344577889976 56998764 4343 212
Q ss_pred HHHcCcHHHHHHhcc
Q 037937 84 LHVDGSLKQMLIDAR 98 (102)
Q Consensus 84 ~~~~g~L~~~l~~~g 98 (102)
-.....|+..|...|
T Consensus 161 ~f~~~~le~~L~~~g 175 (175)
T cd02987 161 DFDAEDLESFLVEYG 175 (175)
T ss_pred CCCHHHHHHHHHhcC
Confidence 334446666666544
No 130
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.08 E-value=3.5e-05 Score=45.48 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=39.1
Q ss_pred HhhhcCCc--EEEEEcCCCchHHHHHHHHHHc----CC-CcEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEE
Q 037937 5 RDLASKKA--AVIFTKSSCCMCHSIKTLFYEL----GA-SPAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYV 75 (102)
Q Consensus 5 ~~~~~~~~--v~iy~~~~Cp~C~~~~~~l~~~----~v-~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~i 75 (102)
.+++++.+ ++.|+.+||+.|+.....|.+. +- ......++.+ . .+ +.+..+..++|++ |-||+.+
T Consensus 11 ~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~~----~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 11 EELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-ID----TLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred HHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-HH----HHHHcCCCcCcEEEEEECCEEE
Confidence 34444443 5679999999999998888653 21 1233444433 2 22 2333567888965 5678653
No 131
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.08 E-value=4.5e-05 Score=44.03 Aligned_cols=60 Identities=25% Similarity=0.344 Sum_probs=38.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHc----CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE--CCEEE
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYEL----GASPAIHELDQDANGREIEWALRALGCNPSVPAVFI--GGRYV 75 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~----~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi--~g~~i 75 (102)
.-++.|+.+||++|+.+...|++. +-......+|.+... .+.+..+..++|++++ +|+.+
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP-----DIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH-----HHHHHcCCCcCCEEEEEeCCcEe
Confidence 346678899999999998777553 323445555544332 1333457789998865 77654
No 132
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.07 E-value=2e-05 Score=47.30 Aligned_cols=57 Identities=25% Similarity=0.343 Sum_probs=36.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHc-------CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--ECCEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYEL-------GASPAIHELDQDANGREIEWALRALGCNPSVPAVF--IGGRYV 75 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~-------~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if--i~g~~i 75 (102)
-++.|+.+||+.|+.....+.+. ++.+-.+|++. .. .+....|..++|+++ .+|+.+
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--~~-----~l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--ER-----RLARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--cH-----HHHHHcCCccCCEEEEEECCEEE
Confidence 46679999999999887776433 23334444443 22 133335778999874 688765
No 133
>PLN02378 glutathione S-transferase DHAR1
Probab=98.04 E-value=4.7e-05 Score=50.51 Aligned_cols=64 Identities=13% Similarity=0.204 Sum_probs=50.7
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 19 SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
..||+|+++.-+|++.|++|+.+.++...... .+...+...+||.+..||..+....-+..+..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~----~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKPQ----WFLDISPQGKVPVLKIDDKWVTDSDVIVGILE 81 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCCH----HHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 46999999999999999999999888754332 24455667899999999988877777666654
No 134
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=98.04 E-value=2.1e-05 Score=51.58 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=54.2
Q ss_pred EEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 15 IFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 15 iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
+|+.+.||+|++++-+|..+|++|+.+.++.........+.+...+...++|.+..||..+....-+..+..
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~ 73 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLE 73 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHH
Confidence 688889999999999999999999998887422111111235556677899999999988888877766553
No 135
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=98.04 E-value=1.3e-05 Score=48.19 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=31.5
Q ss_pred EEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCc-HHHHHHHHhhC
Q 037937 16 FTKSSCCMCHSIKTLFYELGASPAIHELDQDANG-REIEWALRALG 60 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~-~~~~~~l~~~~ 60 (102)
|+.+.|..|++|.++|++.|++|+.+|+...+-. .++.+.+...+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 8899999999999999999999999999876544 44655555544
No 136
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.04 E-value=3.1e-05 Score=49.32 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=36.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC-----CcEEEEeccCCCcHHHHHHHHhh--CCCCCccEE--EECCEEEec
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGA-----SPAIHELDQDANGREIEWALRAL--GCNPSVPAV--FIGGRYVGS 77 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v-----~~~~~~vd~~~~~~~~~~~l~~~--~g~~tvP~i--fi~g~~igg 77 (102)
++.|+++|||.|+.....|++..- .+....||.+... ++...+.-. .+.+++|++ |.+|+.++.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~-~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP-NVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH-HHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 778999999999999888755421 2333444433322 211222110 122348876 678887643
No 137
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.04 E-value=2.6e-05 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHc
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYEL 34 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~ 34 (102)
..|++|+-+.||||+++...+.++
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHH
Confidence 458899999999999999888775
No 138
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.02 E-value=1.3e-05 Score=48.54 Aligned_cols=58 Identities=9% Similarity=0.046 Sum_probs=36.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCC----cEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGAS----PAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGR 73 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~----~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~ 73 (102)
-++.|+.+||++|+.+...|++..-. .....||-+.... ......+..++|++ |.+|+
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~----l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG----KCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH----HHHHhcCCcccCEEEEEECCc
Confidence 36789999999999999988765422 2333444332221 12223566788877 56765
No 139
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.01 E-value=4.1e-05 Score=44.84 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=39.1
Q ss_pred HhhhcCCc--EEEEEcCCCchHHHHHHHHHHcCCC----cEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEE
Q 037937 5 RDLASKKA--AVIFTKSSCCMCHSIKTLFYELGAS----PAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRY 74 (102)
Q Consensus 5 ~~~~~~~~--v~iy~~~~Cp~C~~~~~~l~~~~v~----~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~ 74 (102)
++.+...+ ++.|+.+||++|++....+++..-. +....+|-+... .+.+..+..++|++ |-+|+.
T Consensus 12 ~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~ 84 (101)
T cd03003 12 DAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR-----MLCRSQGVNSYPSLYVFPSGMN 84 (101)
T ss_pred HHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH-----HHHHHcCCCccCEEEEEcCCCC
Confidence 34444433 6679999999999998888654322 233334433322 23333567889988 446653
No 140
>PLN02473 glutathione S-transferase
Probab=98.01 E-value=6.8e-05 Score=49.43 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=55.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
.+++|+.+.+|+|.+++-+|.++|++|+.+.++....... ...+...+...++|.+..||..+....-+.++.
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~-~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL 74 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQK-KPEHLLRQPFGQVPAIEDGDLKLFESRAIARYY 74 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccC-CHHHHhhCCCCCCCeEEECCEEEEehHHHHHHH
Confidence 3578999999999999999999999999988775431111 112223456679999999998888887777654
No 141
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.00 E-value=3.3e-05 Score=45.60 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=34.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcC----CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELG----ASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~----v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
-++.|+.+||++|++....+++.. -......++.+.+.. ..+....+..++|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~---~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN---KPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc---HHHHHHcCCCcCCEEEE
Confidence 477899999999999887776542 123333344333211 12333456788998853
No 142
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.00 E-value=1.4e-05 Score=46.37 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=33.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCC------CcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGA------SPAIHELDQDANGREIEWALRALGCNPSVPAVF 69 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v------~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if 69 (102)
-+++|+.+||+.|+.....|.+..- .+....+|.+... .+.+..+...+|.++
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK-----DLASRFGVSGFPTIK 74 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH-----HHHHhCCCCcCCEEE
Confidence 3788999999999988777754321 2334444433322 234445778999884
No 143
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=97.97 E-value=7.3e-05 Score=51.51 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=49.8
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 19 SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
..||+|++++-+|+++|++|+.+.++......+ +...+-..++|.+..+|..+....-+.++.
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~----fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL 133 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEW----FLKISPEGKVPVVKLDEKWVADSDVITQAL 133 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHH----HHhhCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 469999999999999999999988876544332 334456679999999998887777766654
No 144
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.97 E-value=2.3e-05 Score=46.05 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=35.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCC----cEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--ECC
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGAS----PAIHELDQDANGREIEWALRALGCNPSVPAVF--IGG 72 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~----~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if--i~g 72 (102)
-++.|+++||+.|++....+++..-. .....+|-+... .+.+..+..++|+++ -+|
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE-----SLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH-----HHHHHcCCCcccEEEEEcCC
Confidence 46679999999999988887654322 333344433221 233445778899874 465
No 145
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.97 E-value=4.5e-05 Score=44.44 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=35.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHc----C--CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYEL----G--ASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~----~--v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
-++.|+++|||+|++....+.+. . -.+....+|.+.... .+....+..++|++++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK----DLAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch----hhHHhCCCCCcCEEEE
Confidence 37789999999999888877543 2 235556666544212 2333346688998864
No 146
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.94 E-value=4.3e-05 Score=45.09 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=32.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHc-------CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYEL-------GASPAIHELDQDANGREIEWALRALGCNPSVPAVF 69 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~-------~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if 69 (102)
-++.|+.+|||+|++....|++. +..+....++.+... .+.+..+..++|+++
T Consensus 18 vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 18 WLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS-----SIASEFGVRGYPTIK 77 (104)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH-----hHHhhcCCccccEEE
Confidence 36679999999999888777543 222333333332221 233445778899884
No 147
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.93 E-value=4.4e-05 Score=47.02 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=41.1
Q ss_pred HHhhhcCCc-E-EEEEcCCCchHHHHHH-HHHH------cCCCcEEEEeccCC--CcHH-HHHHHHhhCCCCCccEEEE-
Q 037937 4 VRDLASKKA-A-VIFTKSSCCMCHSIKT-LFYE------LGASPAIHELDQDA--NGRE-IEWALRALGCNPSVPAVFI- 70 (102)
Q Consensus 4 v~~~~~~~~-v-~iy~~~~Cp~C~~~~~-~l~~------~~v~~~~~~vd~~~--~~~~-~~~~l~~~~g~~tvP~ifi- 70 (102)
++.+.++++ | +.|+.+||++|++..+ .|.+ ..-.|..+.+|.+. +..+ ..+.+....|...+|++.+
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl 87 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFL 87 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 445555554 3 4488899999998854 3332 23356655565543 2221 2222333456778998754
Q ss_pred --CCEEE
Q 037937 71 --GGRYV 75 (102)
Q Consensus 71 --~g~~i 75 (102)
+|+.+
T Consensus 88 ~~~G~~~ 94 (124)
T cd02955 88 TPDLKPF 94 (124)
T ss_pred CCCCCEE
Confidence 56766
No 148
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.92 E-value=6.7e-05 Score=47.05 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=39.2
Q ss_pred HhhhcCC--cEEEEEcCCCchHHHHHHHHHHc----C--CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE-E--CCE
Q 037937 5 RDLASKK--AAVIFTKSSCCMCHSIKTLFYEL----G--ASPAIHELDQDANGREIEWALRALGCNPSVPAVF-I--GGR 73 (102)
Q Consensus 5 ~~~~~~~--~v~iy~~~~Cp~C~~~~~~l~~~----~--v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if-i--~g~ 73 (102)
++++... -|+.|+.+||++|+.....|.+. + +.+..+++|.... . .+....+...+|+++ + +|+
T Consensus 14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~-~----~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW-L----PEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred HHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc-H----HHHHHcCCCCCCEEEEECCCCC
Confidence 3444444 36679999999999988887653 2 2334445543211 1 123345778899875 4 466
Q ss_pred EE
Q 037937 74 YV 75 (102)
Q Consensus 74 ~i 75 (102)
.+
T Consensus 89 ~v 90 (142)
T cd02950 89 EE 90 (142)
T ss_pred EE
Confidence 44
No 149
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.92 E-value=3.7e-05 Score=51.49 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=46.7
Q ss_pred hHHhhhcCCcEEEEEcCCCchHHHHHHHH----HHcCCCcEEEEeccCCC--cHH--HHHHHHhhCCCCCccEEEE
Q 037937 3 RVRDLASKKAAVIFTKSSCCMCHSIKTLF----YELGASPAIHELDQDAN--GRE--IEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 3 ~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l----~~~~v~~~~~~vd~~~~--~~~--~~~~l~~~~g~~tvP~ifi 70 (102)
.++++.+...+++|++++||+|+....+| +++|++...+.+|.... ... .-..+.+.-|...+|.+|+
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 46777788889999999999999887777 45688888888875311 000 0012233346689999985
No 150
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.91 E-value=6.4e-05 Score=51.99 Aligned_cols=67 Identities=25% Similarity=0.333 Sum_probs=42.1
Q ss_pred HHhhhcCCcEEEEEcCCCchHHHHHHHHHH----cCCCcEEEEeccCCCcH--H--HHHHHHhhCCCCCccEEEE
Q 037937 4 VRDLASKKAAVIFTKSSCCMCHSIKTLFYE----LGASPAIHELDQDANGR--E--IEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 4 v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~----~~v~~~~~~vd~~~~~~--~--~~~~l~~~~g~~tvP~ifi 70 (102)
++++.....++.|+.+|||+|+.....|++ +++.+..+++|...... . ....+....|..++|++|+
T Consensus 161 l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 161 MKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 455556667888999999999988877754 45555556666532110 0 0012333457789999863
No 151
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.88 E-value=9.4e-05 Score=43.08 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=33.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcC----CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELG----ASPAIHELDQDANGREIEWALRALGCNPSVPAVF 69 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~----v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if 69 (102)
-++.|+.+||+.|++....|.+.. -.+....+|.+... .+.+..+..++|+++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~~~i~~~P~~~ 77 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ-----SLAQQYGVRGFPTIK 77 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH-----HHHHHCCCCccCEEE
Confidence 367889999999999988776532 22444455443322 133334678899874
No 152
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=5e-05 Score=45.59 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=38.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCc---EEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASP---AIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRY 74 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~---~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~ 74 (102)
|+-|+.+||+.|+.....+.++..+| ..+.+|.++ .. .+.+..+...+|++ +.+|+-
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-~~----~~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-LE----EVAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-CH----hHHHhcCceEeeEEEEEECCEE
Confidence 45599999999999999998876554 233344333 32 24444567889987 457754
No 153
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=97.86 E-value=3.1e-05 Score=51.42 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=36.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCC-------cE--------EEEeccCCCcHHHHHHHHhhCC--CCCccEEEECCE-E
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGAS-------PA--------IHELDQDANGREIEWALRALGC--NPSVPAVFIGGR-Y 74 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~-------~~--------~~~vd~~~~~~~~~~~l~~~~g--~~tvP~ifi~g~-~ 74 (102)
|.+||+.+|+.|..|-++|.++.-. |+ ..|--..+...+.++......| ....|+++|||+ +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 6799999999999999999765321 11 1121112222334455544444 345799999995 5
Q ss_pred EechH
Q 037937 75 VGSAK 79 (102)
Q Consensus 75 igg~~ 79 (102)
.+|.+
T Consensus 82 ~~g~~ 86 (202)
T PF06764_consen 82 RVGSD 86 (202)
T ss_dssp EETT-
T ss_pred eeccC
Confidence 66665
No 154
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.84 E-value=3.2e-05 Score=45.12 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=35.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHc----C--CCcEEEEeccCCC-cHHHHHHHHhhCCCCCccEE--EECCEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYEL----G--ASPAIHELDQDAN-GREIEWALRALGCNPSVPAV--FIGGRYV 75 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~----~--v~~~~~~vd~~~~-~~~~~~~l~~~~g~~tvP~i--fi~g~~i 75 (102)
-++.|+.+|||+|++....+.+. . -.+....+|.+.+ .. .+....|..++|++ |-+|+.+
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHD----ALKEEYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccH----HHHHhCCCccccEEEEEeCCCee
Confidence 36789999999999887666433 1 1233434443332 22 23344567789987 4455543
No 155
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.82 E-value=0.00011 Score=48.07 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=25.8
Q ss_pred cEEEEEcCCCchHHHHHH----HHHHcCCCcEEEEeccC
Q 037937 12 AAVIFTKSSCCMCHSIKT----LFYELGASPAIHELDQD 46 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~----~l~~~~v~~~~~~vd~~ 46 (102)
+++.|+.+|||+|++... +-+++++++.-+.+|..
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~ 110 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ 110 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 488999999999998744 44556766666666644
No 156
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.82 E-value=8.9e-05 Score=43.12 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=36.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHc----CC---CcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--ECCEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYEL----GA---SPAIHELDQDANGREIEWALRALGCNPSVPAVF--IGGRYV 75 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~----~v---~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if--i~g~~i 75 (102)
-++.|+++||+.|+.....|++. .- .+....+|-+... .+.+..+..++|+++ -+|+.+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 86 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-----ELCSEFQVRGYPTLLLFKDGEKV 86 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-----hhHhhcCCCcCCEEEEEeCCCee
Confidence 45679999999999887777443 21 3445555544332 133335678899864 566543
No 157
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.78 E-value=5.7e-06 Score=51.28 Aligned_cols=64 Identities=13% Similarity=0.262 Sum_probs=33.1
Q ss_pred hHHhhhcCCcEEEEEcCCCchHHHHHHHHHHc-----CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 3 RVRDLASKKAAVIFTKSSCCMCHSIKTLFYEL-----GASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 3 ~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~-----~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
+++..-++..+++++.+|||.|.+...+|.+. +++.+++..|.+.+. +...+ . .|..++|++++
T Consensus 35 ~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el--~~~~l-t-~g~~~IP~~I~ 103 (129)
T PF14595_consen 35 KLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKEL--MDQYL-T-NGGRSIPTFIF 103 (129)
T ss_dssp HHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHH--TTTTT-T--SS--SSEEEE
T ss_pred HHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhH--HHHHH-h-CCCeecCEEEE
Confidence 34455555689999999999999887777543 455555555433221 11112 2 56789999864
No 158
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00016 Score=47.65 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=55.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCE-EEechHHHHhHHH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGR-YVGSAKDVISLHV 86 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~-~igg~~~~~~~~~ 86 (102)
++|+.+.+|+|.++.-.+.++|++|+.+.++... ......+...+....||.+..+|- .+-...-+.++..
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~--~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~ 73 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA--EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLA 73 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc--ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHH
Confidence 5788888899999999999999999999998875 111234556677789999998875 5666666666554
No 159
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.77 E-value=0.00012 Score=44.43 Aligned_cols=56 Identities=11% Similarity=0.241 Sum_probs=37.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCC------cEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGAS------PAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYV 75 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~------~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~i 75 (102)
|+-|+.+|||.|+..-.+|++..-+ +-.+|+|..++ +.+..+....|+. |-||+|+
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-------va~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-------YTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-------HHHhcCceeCcEEEEEECCcEE
Confidence 4459999999999999999876532 33455554333 3344555556754 6788885
No 160
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=97.76 E-value=0.00032 Score=39.57 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=50.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHh--hCCCCCccEEEECCEEEechHHHHhHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRA--LGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~--~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
.++|+.+..+.|.+++-+|+..|++|+.+.++..++ ..+ ... .....++|.+..||..+....-+..+.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~---~~~-~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL 72 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAED---LEK-LKKDGSLMFQQVPMVEIDGMKLVQTRAILNYI 72 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHH---HHh-hccccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence 468888999999999999999999999988875321 111 111 112468999999998887776665554
No 161
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.75 E-value=5.6e-05 Score=49.81 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=46.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCC---cEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEEe---chHHHHh-
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGAS---PAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYVG---SAKDVIS- 83 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~---~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~ig---g~~~~~~- 83 (102)
|+-|+.+||+.|+.+...|+++... ...+.|+.+.. ....+...+|++ |-||+.++ |+.++--
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~--------~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~ 177 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC--------IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGM 177 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh--------HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCC
Confidence 4559999999999998888765432 23444443211 123567889987 56887653 3333210
Q ss_pred HHHcCcHHHHHHhcc
Q 037937 84 LHVDGSLKQMLIDAR 98 (102)
Q Consensus 84 ~~~~g~L~~~l~~~g 98 (102)
-....+|+..|...|
T Consensus 178 ~~~~~~lE~~L~~~g 192 (192)
T cd02988 178 NTTMEDLEWLLVQVG 192 (192)
T ss_pred CCCHHHHHHHHHhcC
Confidence 123346666666554
No 162
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=97.69 E-value=0.00037 Score=46.42 Aligned_cols=63 Identities=10% Similarity=0.196 Sum_probs=52.8
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 19 SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
..||+|+++-..|...+++|.+..||....... +..+++.+.+|.+-.||+++-..+.+.+..
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~----f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~L 81 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEW----FLDISPGGKPPVLKFDEKWVTDSDKIEEFL 81 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHH----HHhhCCCCCCCeEEeCCceeccHHHHHHHH
Confidence 369999999999999999999999988777653 555677788999999999998888776643
No 163
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.68 E-value=0.00039 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.557 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHH
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYE 33 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~ 33 (102)
+..+++|+.+.||||+++...+.+
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhh
Confidence 456889999999999999999874
No 164
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.65 E-value=0.00032 Score=44.64 Aligned_cols=39 Identities=26% Similarity=0.471 Sum_probs=28.3
Q ss_pred hcCCcEEEEEcCCCchHHHHHHHHHH----cCCCcEEEEeccC
Q 037937 8 ASKKAAVIFTKSSCCMCHSIKTLFYE----LGASPAIHELDQD 46 (102)
Q Consensus 8 ~~~~~v~iy~~~~Cp~C~~~~~~l~~----~~v~~~~~~vd~~ 46 (102)
.+...++.|+.+|||+|++....|.+ +++.+..+++|..
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 34556899999999999988887754 4555555666643
No 165
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.64 E-value=0.00073 Score=42.77 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=18.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYE 33 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~ 33 (102)
-++-|+.+|||.|++....|.+
T Consensus 28 vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 28 LLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEEECCCChhHHHHHHHHHH
Confidence 3556899999999998888865
No 166
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.63 E-value=0.00031 Score=47.41 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=38.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCC----CcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--ECCEEE
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGA----SPAIHELDQDANGREIEWALRALGCNPSVPAVF--IGGRYV 75 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v----~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if--i~g~~i 75 (102)
.-++.|+.+|||+|++....+++..- ......+|.+... .+.+..+..++|+++ -+|+.+
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~-----~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL-----NLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH-----HHHHHcCCCcCCEEEEEECCEEE
Confidence 34778999999999999888865421 2333344433221 244445778899774 578765
No 167
>PRK10357 putative glutathione S-transferase; Provisional
Probab=97.63 E-value=0.00046 Score=45.07 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=50.8
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE-CCEEEechHHHHhHH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI-GGRYVGSAKDVISLH 85 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi-~g~~igg~~~~~~~~ 85 (102)
++|+.+.||++++++-+|+..|++|+.++++...... .+.+.+...++|++.. +|..+-...-+..+.
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~----~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL 70 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADN----GVAQYNPLGKVPALVTEEGECWFDSPIIAEYI 70 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCch----hhhhcCCccCCCeEEeCCCCeeecHHHHHHHH
Confidence 5899999999999999999999999998887543322 2334466789999984 676666665555543
No 168
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.61 E-value=9.3e-05 Score=44.66 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=33.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCC-------cEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGAS-------PAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~-------~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
-++.|+.+||+.|+.....+++..-. +....+|-+.+.. ..+.+..+...+|++++
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~---~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN---VALCRDFGVTGYPTLRY 84 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh---HHHHHhCCCCCCCEEEE
Confidence 46679999999999888887654321 2333444222111 12334456688998853
No 169
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.59 E-value=0.00083 Score=40.98 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=16.6
Q ss_pred cEEEEEcCCCchHHHHHHHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFY 32 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~ 32 (102)
-++.|+.+|||.|++....|.
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEEECCCChHHHHHhHHHH
Confidence 466688999999998766664
No 170
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.59 E-value=0.00028 Score=48.31 Aligned_cols=68 Identities=12% Similarity=0.042 Sum_probs=46.2
Q ss_pred hHHhhhcCCcEEEEEcCCCchHHHHHHHH----HHcCCCcEEEEeccCC--CcHHH--HHHHHhhCCCCCccEEEE
Q 037937 3 RVRDLASKKAAVIFTKSSCCMCHSIKTLF----YELGASPAIHELDQDA--NGREI--EWALRALGCNPSVPAVFI 70 (102)
Q Consensus 3 ~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l----~~~~v~~~~~~vd~~~--~~~~~--~~~l~~~~g~~tvP~ifi 70 (102)
.|+++.+...+++|+.+.||+|++.-.++ +++|++..-+.+|... ..... .......-|...+|.+|+
T Consensus 137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEE
Confidence 47778888999999999999999877776 4568877777777522 21100 011112346688999985
No 171
>PTZ00062 glutaredoxin; Provisional
Probab=97.58 E-value=0.00033 Score=46.62 Aligned_cols=64 Identities=8% Similarity=0.040 Sum_probs=43.0
Q ss_pred hHHhhhcC--C-cEEEEEcCCCchHHHHHHHHHHcCCC---cEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEE
Q 037937 3 RVRDLASK--K-AAVIFTKSSCCMCHSIKTLFYELGAS---PAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRY 74 (102)
Q Consensus 3 ~v~~~~~~--~-~v~iy~~~~Cp~C~~~~~~l~~~~v~---~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~ 74 (102)
.+.+++++ . .|..|+.+|||.|+.+...|.++.-+ +..+.|+.+ .+...+|++ |-||+.
T Consensus 8 e~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V~~vPtfv~~~~g~~ 74 (204)
T PTZ00062 8 EKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DANNEYGVFEFYQNSQL 74 (204)
T ss_pred HHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCcccceEEEEEECCEE
Confidence 34556662 2 56667799999999999998776543 455666533 355778865 468887
Q ss_pred EechH
Q 037937 75 VGSAK 79 (102)
Q Consensus 75 igg~~ 79 (102)
++.++
T Consensus 75 i~r~~ 79 (204)
T PTZ00062 75 INSLE 79 (204)
T ss_pred Eeeee
Confidence 76543
No 172
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.58 E-value=0.00028 Score=48.51 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=47.6
Q ss_pred hHHhhhcCCcEEEEEcCCCchHHHHHHHH----HHcCCCcEEEEeccCC--CcHH--HHHHHHhhCCCCCccEEEE
Q 037937 3 RVRDLASKKAAVIFTKSSCCMCHSIKTLF----YELGASPAIHELDQDA--NGRE--IEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 3 ~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l----~~~~v~~~~~~vd~~~--~~~~--~~~~l~~~~g~~tvP~ifi 70 (102)
.++++.+...+++|+++.||+|++...++ +++|++...+.+|... .... .-..+.+.-|...+|.+|+
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 46777888899999999999999887776 5678888888888652 2111 0011222336688999985
No 173
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.57 E-value=0.00061 Score=41.73 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=34.8
Q ss_pred cEEEE-EcCCCc--hHH--HH--------HHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEEe
Q 037937 12 AAVIF-TKSSCC--MCH--SI--------KTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYVG 76 (102)
Q Consensus 12 ~v~iy-~~~~Cp--~C~--~~--------~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~ig 76 (102)
.+++| ..+||+ +|+ .. ..+|++.++.+-.+|+|.++ .+.+..|..++|++ |.||+.+.
T Consensus 29 ~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~-------~La~~~~I~~iPTl~lfk~G~~v~ 101 (120)
T cd03065 29 LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA-------KVAKKLGLDEEDSIYVFKDDEVIE 101 (120)
T ss_pred eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH-------HHHHHcCCccccEEEEEECCEEEE
Confidence 34554 445665 498 22 33333445666666666542 24455688899987 78998663
No 174
>PLN02395 glutathione S-transferase
Probab=97.57 E-value=0.00081 Score=44.24 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=54.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
.+++|+.+.| .+.+++-+|.+.|++|+.+.++...... ..+.+.+.+...+||.+..+|..+....-+.++..
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~-~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEH-KQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCc-CCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 3689987775 4799999999999999998887642210 01234455667899999999988888877777654
No 175
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.57 E-value=0.00041 Score=43.72 Aligned_cols=54 Identities=6% Similarity=0.117 Sum_probs=33.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCC------cEEEEeccCCCcHHHHHHHHhhCCCC-CccEE--EECCE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGAS------PAIHELDQDANGREIEWALRALGCNP-SVPAV--FIGGR 73 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~------~~~~~vd~~~~~~~~~~~l~~~~g~~-tvP~i--fi~g~ 73 (102)
|+-|+.+||+.|+....+|++..-+ +-.+|+|..++ +....+.. ..|.+ |-||+
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d-------la~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD-------FNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH-------HHHHcCccCCCcEEEEEECCe
Confidence 5569999999999999998776422 23455554432 33334555 34555 34665
No 176
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.55 E-value=0.00049 Score=39.03 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=38.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHc------CCCcEEEEeccCCC--------------------cHHHHHH-----HHhhCC
Q 037937 13 AVIFTKSSCCMCHSIKTLFYEL------GASPAIHELDQDAN--------------------GREIEWA-----LRALGC 61 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~------~v~~~~~~vd~~~~--------------------~~~~~~~-----l~~~~g 61 (102)
|.+|+.+.||+|..+...+.+. ++.+..+.+..... ..++.+. +....|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999998888774 24445555444332 1111111 122356
Q ss_pred CCCccEEEECC
Q 037937 62 NPSVPAVFIGG 72 (102)
Q Consensus 62 ~~tvP~ifi~g 72 (102)
...+|+++++|
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 68899999999
No 177
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.55 E-value=0.00027 Score=40.05 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=33.5
Q ss_pred EEEEEcCCCchHHHHHHHHHH-------cCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYE-------LGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~-------~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
++.|+.+||++|++..+.+-+ ..-.|..+.+|.+...... .+.. ..+|++++
T Consensus 21 lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~----~~~P~~~~ 79 (82)
T PF13899_consen 21 LVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDR----QGYPTFFF 79 (82)
T ss_dssp EEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHH----CSSSEEEE
T ss_pred EEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCC----ccCCEEEE
Confidence 567899999999988776521 3345777777765444332 2222 33898865
No 178
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00051 Score=44.90 Aligned_cols=70 Identities=13% Similarity=0.220 Sum_probs=49.5
Q ss_pred EEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHc
Q 037937 16 FTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVD 87 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~ 87 (102)
|+++.|.+ +++-.|.-++++|+++.|+--.+..+.-..+++.+.-.+||++.|||..+-..--++++.++
T Consensus 11 YWrSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeE 80 (217)
T KOG0868|consen 11 YWRSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEE 80 (217)
T ss_pred hhcccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHh
Confidence 45566665 66666777788888887776544333334677777778999999999988777666666543
No 179
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.48 E-value=0.00017 Score=41.96 Aligned_cols=53 Identities=21% Similarity=0.405 Sum_probs=31.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCC------CcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGA------SPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v------~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
-++.|+.+||++|+.....+++..- .+....+|.+.. + +....+..++|++++
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~----~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--D----VPSEFVVDGFPTILF 79 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--h----hhhhccCCCCCEEEE
Confidence 4677999999999998888765431 233334443322 1 112234478998753
No 180
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.46 E-value=0.00098 Score=40.90 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=16.6
Q ss_pred cEEEEEcCCCchHHHHHHHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFY 32 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~ 32 (102)
-++.|+.+|||.|+.....|.
T Consensus 20 vll~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 20 VGLYFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEEEEECCCCchHHHHHHHHH
Confidence 456788999999998766664
No 181
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.46 E-value=0.00085 Score=40.68 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=22.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCC--CcEEEEec
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGA--SPAIHELD 44 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v--~~~~~~vd 44 (102)
-++.|+.+|||.|++....|.+..- .+..+-|+
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~ 62 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMALARQGRVPIYGIN 62 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 4778999999999988777765432 23444444
No 182
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=97.45 E-value=0.0014 Score=36.59 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=44.3
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 19 SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
+.+|+|-++..+|+-.+++|+..... ++.. +....+|.+..+|+.+++++.+.++.+
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~~----------sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPWR----------SPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecC-CCCC----------CCCCccCEEEECCEEecChHHHHHHHH
Confidence 45899999999999999999776333 2211 223569999999999999998888654
No 183
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=97.43 E-value=0.0017 Score=42.93 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=50.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE-----CCE--EEechHHHHhHH
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI-----GGR--YVGSAKDVISLH 85 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi-----~g~--~igg~~~~~~~~ 85 (102)
+++|+.+ +|+|++++-+|+++|++|+.++++..... ...+.+.+.+....||++.. ||. .+-...-+.++.
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGG-QFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccc-cCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 4688877 69999999999999999999888764321 11123555666789999987 452 455555555544
No 184
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.34 E-value=0.00073 Score=50.03 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=35.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcC-------CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELG-------ASPAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGR 73 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~-------v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~ 73 (102)
-++.|+.+|||+|+.....|++.. +.+-.+++|.+.. + ......+..++|++ |.+|.
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~---~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--E---FAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--H---HHHHHcCCCccceEEEEECCC
Confidence 366799999999999988886542 3334455554321 1 12223466788887 45653
No 185
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.29 E-value=0.0017 Score=47.04 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=40.7
Q ss_pred HHhhhcCCc--EEEEEcCCCchHHHHHHHHHH-------cCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECC
Q 037937 4 VRDLASKKA--AVIFTKSSCCMCHSIKTLFYE-------LGASPAIHELDQDANGREIEWALRALGCNPSVPAV--FIGG 72 (102)
Q Consensus 4 v~~~~~~~~--v~iy~~~~Cp~C~~~~~~l~~-------~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g 72 (102)
++++++.++ ++.|+++||++|++....+.+ .+-.+....+|-+... .+.+..+..++|++ |-+|
T Consensus 11 ~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g 85 (462)
T TIGR01130 11 FDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK-----DLAQKYGVSGYPTLKIFRNG 85 (462)
T ss_pred HHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH-----HHHHhCCCccccEEEEEeCC
Confidence 445555554 667999999999988766643 2322444555543332 23444577889987 4566
Q ss_pred EE
Q 037937 73 RY 74 (102)
Q Consensus 73 ~~ 74 (102)
+.
T Consensus 86 ~~ 87 (462)
T TIGR01130 86 ED 87 (462)
T ss_pred cc
Confidence 54
No 186
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=97.26 E-value=0.0063 Score=33.91 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=48.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCC-CCccEEEEC-CEEEechHHHHhHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCN-PSVPAVFIG-GRYVGSAKDVISLH 85 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~-~tvP~ifi~-g~~igg~~~~~~~~ 85 (102)
++.+|..++ .|.+++-+|+..|++|+.+.++....... .+.+.+.... ..+|.+..+ |..+-...-+..+.
T Consensus 2 ~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~-~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YL 74 (76)
T PF02798_consen 2 TLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHK-SPEFLAINPMFGKVPALEDGDGFVLTESNAILRYL 74 (76)
T ss_dssp EEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGG-SHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHH
T ss_pred EEEEECCCC--chHHHHHHHHHhcccCceEEEeccccccc-chhhhhcccccceeeEEEECCCCEEEcHHHHHHHh
Confidence 355666666 88999999999999999998886432210 0234444445 789999999 98888777666543
No 187
>PRK11752 putative S-transferase; Provisional
Probab=97.25 E-value=0.0034 Score=43.10 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=52.8
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHc------CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECC----EEEech
Q 037937 9 SKKAAVIFTKSSCCMCHSIKTLFYEL------GASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGG----RYVGSA 78 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~~~~~~l~~~------~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g----~~igg~ 78 (102)
..+++++|+.+ +|+|++++-+|+++ |++|+.+.++..... ...+.+.+.+...+||++..++ ..+...
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~-~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES 118 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGD-QFSSGFVEINPNSKIPALLDRSGNPPIRVFES 118 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCcccc-ccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcH
Confidence 45578999864 99999999999997 888998887753321 1112345556678999998753 466666
Q ss_pred HHHHhHH
Q 037937 79 KDVISLH 85 (102)
Q Consensus 79 ~~~~~~~ 85 (102)
.-+.++.
T Consensus 119 ~AIl~YL 125 (264)
T PRK11752 119 GAILLYL 125 (264)
T ss_pred HHHHHHH
Confidence 6666654
No 188
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.25 E-value=0.0076 Score=36.73 Aligned_cols=68 Identities=15% Similarity=0.015 Sum_probs=43.2
Q ss_pred HHhhhcCCc--EEEEEc--CCCc---hHHHHHHHHHHcC--CCcEEEEeccCCCcHHHHHHHHhhCCCC--CccEE--EE
Q 037937 4 VRDLASKKA--AVIFTK--SSCC---MCHSIKTLFYELG--ASPAIHELDQDANGREIEWALRALGCNP--SVPAV--FI 70 (102)
Q Consensus 4 v~~~~~~~~--v~iy~~--~~Cp---~C~~~~~~l~~~~--v~~~~~~vd~~~~~~~~~~~l~~~~g~~--tvP~i--fi 70 (102)
+.+.++.++ ++.|.. |||. +|.+...-+.+.. +.+-.+|++...+..+ ..|....|.. .+|++ |.
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~--~~L~~~y~I~~~gyPTl~lF~ 88 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLN--MELGERYKLDKESYPVIYLFH 88 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhh--HHHHHHhCCCcCCCCEEEEEe
Confidence 445566665 567999 8898 8888876665433 4455566654333222 3466667777 89987 67
Q ss_pred CCE
Q 037937 71 GGR 73 (102)
Q Consensus 71 ~g~ 73 (102)
+|.
T Consensus 89 ~g~ 91 (116)
T cd03007 89 GGD 91 (116)
T ss_pred CCC
Confidence 773
No 189
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.25 E-value=0.00081 Score=40.40 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEe
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYELGASPAIHEL 43 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~v 43 (102)
...++.|+.+|||.|+.....|.+..-.+..+-|
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i 54 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSV 54 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhCCEEEE
Confidence 3457788999999999887777654333443333
No 190
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=97.20 E-value=0.0078 Score=34.10 Aligned_cols=71 Identities=8% Similarity=-0.047 Sum_probs=47.6
Q ss_pred EEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCc----HHHHHHHH-hhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 15 IFTKSSCCMCHSIKTLFYELGASPAIHELDQDANG----REIEWALR-ALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 15 iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~----~~~~~~l~-~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
+|+-..-+.|.+++-+|+..|++|+.+.++..... .+...... ...-..++|.+..||..+.-..-+..+.
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHH
Confidence 45555567899999999999999999888764321 12111111 0114568999999998887776666554
No 191
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=97.20 E-value=0.006 Score=34.26 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=43.7
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 19 SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
+..+.|.++..+|+..|++|+.++....+. .+....+|.+..||+.++...-+..+..
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~~----------~~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAEF----------MSPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCccc----------cCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 578899999999999999999885321100 1123579999999999999887776543
No 192
>PTZ00102 disulphide isomerase; Provisional
Probab=97.19 E-value=0.0025 Score=46.66 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=38.3
Q ss_pred HhhhcCC--cEEEEEcCCCchHHHHHHHHHH-------cCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCE
Q 037937 5 RDLASKK--AAVIFTKSSCCMCHSIKTLFYE-------LGASPAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGR 73 (102)
Q Consensus 5 ~~~~~~~--~v~iy~~~~Cp~C~~~~~~l~~-------~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~ 73 (102)
++.++.+ -++.|+.+||++|++....+.+ .+-++....+|-+... .+....+..++|++ |-+|.
T Consensus 43 ~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 43 DKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-----ELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred HHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-----HHHHhcCCCcccEEEEEECCc
Confidence 3444444 4778999999999988765543 2233445555543332 23344567789987 34554
No 193
>PLN02309 5'-adenylylsulfate reductase
Probab=97.18 E-value=0.0019 Score=47.77 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=35.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCC-----CcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--ECC
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGA-----SPAIHELDQDANGREIEWALRALGCNPSVPAVF--IGG 72 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v-----~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if--i~g 72 (102)
-++.|+.|||++|+.+...|++..- .+....+|-+....+ ...+..+..++|+++ .+|
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~---la~~~~~I~~~PTil~f~~g 432 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE---FAKQELQLGSFPTILLFPKN 432 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH---HHHhhCCCceeeEEEEEeCC
Confidence 4778999999999999888865522 233444443312121 122234677899884 444
No 194
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.17 E-value=0.0017 Score=37.26 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=33.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHH----cC--CCcEEEEeccCCCcHHHHHHHHhh
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYE----LG--ASPAIHELDQDANGREIEWALRAL 59 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~----~~--v~~~~~~vd~~~~~~~~~~~l~~~ 59 (102)
.++.|+++||+.|.+....|.+ ++ -.++.+-|..+++..++++.++..
T Consensus 4 ~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 4 VLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 4678999999999987777643 34 567777777776666666666654
No 195
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0016 Score=48.49 Aligned_cols=66 Identities=20% Similarity=0.284 Sum_probs=44.9
Q ss_pred HHhhhcCCcE--EEEEcCCCchHH-------HHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECC
Q 037937 4 VRDLASKKAA--VIFTKSSCCMCH-------SIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAV--FIGG 72 (102)
Q Consensus 4 v~~~~~~~~v--~iy~~~~Cp~C~-------~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g 72 (102)
+.+.|..+.+ +-|+.|||.+|+ +|-..|.+.+-+...-.||-.... .+...++.+.+|++ |.||
T Consensus 35 f~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~-----~~~~~y~v~gyPTlkiFrnG 109 (493)
T KOG0190|consen 35 FKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES-----DLASKYEVRGYPTLKIFRNG 109 (493)
T ss_pred HHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh-----hhHhhhcCCCCCeEEEEecC
Confidence 4556666764 569999999999 455566666656666667654442 35555677888886 7788
Q ss_pred EE
Q 037937 73 RY 74 (102)
Q Consensus 73 ~~ 74 (102)
+.
T Consensus 110 ~~ 111 (493)
T KOG0190|consen 110 RS 111 (493)
T ss_pred Cc
Confidence 74
No 196
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.13 E-value=0.0029 Score=41.14 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=22.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCC-CcEEEEecc
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGA-SPAIHELDQ 45 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v-~~~~~~vd~ 45 (102)
-++.|+.+|||.|++....|.+..- .+.++-|+.
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~ 105 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNY 105 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 4667999999999988777755421 234444543
No 197
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.05 E-value=0.005 Score=46.76 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=34.4
Q ss_pred EEEEEcCCCchHHHHHHH-H------HHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE---CCEE
Q 037937 13 AVIFTKSSCCMCHSIKTL-F------YELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI---GGRY 74 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~-l------~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi---~g~~ 74 (102)
++.|+.+||++|+..... + ++.+ ++..+.+|.+.+..+.+ .+.+..+...+|++++ ||+.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~-~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDV-ALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhH-HHHHHcCCCCCCEEEEECCCCCC
Confidence 556999999999987654 2 1222 34444444333222222 3444467788998854 4554
No 198
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.03 E-value=0.0045 Score=40.46 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=16.2
Q ss_pred cEEEEEcCCCchHHHHHHHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFY 32 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~ 32 (102)
-++.|+.+|||.|++....+.
T Consensus 77 vvl~F~atwCp~C~~~lp~l~ 97 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIK 97 (189)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 466799999999997765553
No 199
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=97.02 E-value=0.0041 Score=36.09 Aligned_cols=65 Identities=11% Similarity=0.140 Sum_probs=34.5
Q ss_pred EEEEcC-CCchHH------HHHHHHHH--------cCCCcEEEEeccCCCcHHHHHHHHhh-CCCCCccEEEECCEEEec
Q 037937 14 VIFTKS-SCCMCH------SIKTLFYE--------LGASPAIHELDQDANGREIEWALRAL-GCNPSVPAVFIGGRYVGS 77 (102)
Q Consensus 14 ~iy~~~-~Cp~C~------~~~~~l~~--------~~v~~~~~~vd~~~~~~~~~~~l~~~-~g~~tvP~ifi~g~~igg 77 (102)
++|+.. -|+.|. ....||+. ..+.++++||...++..+-++...++ ...--.|.|.+||+.||.
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 467776 488775 44455532 13456778887766553333333332 344568999999999975
Q ss_pred h
Q 037937 78 A 78 (102)
Q Consensus 78 ~ 78 (102)
-
T Consensus 81 G 81 (93)
T PF07315_consen 81 G 81 (93)
T ss_dssp S
T ss_pred C
Confidence 3
No 200
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.01 E-value=0.0028 Score=40.21 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcC-----CCcEEEEeccCCCcHHHH-----------------HHHHhhCCCCCccEE
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELG-----ASPAIHELDQDANGREIE-----------------WALRALGCNPSVPAV 68 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~-----v~~~~~~vd~~~~~~~~~-----------------~~l~~~~g~~tvP~i 68 (102)
..++.|+.+|||+|+.....|.+.. -.+..+-++.+....+++ ..+.+..|...+|.+
T Consensus 63 ~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~ 142 (173)
T PRK03147 63 GVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTT 142 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeE
Confidence 3567888999999997665554322 124455554443322211 123344566788975
Q ss_pred E-EC--CEEE
Q 037937 69 F-IG--GRYV 75 (102)
Q Consensus 69 f-i~--g~~i 75 (102)
| +| |+.+
T Consensus 143 ~lid~~g~i~ 152 (173)
T PRK03147 143 FLIDKDGKVV 152 (173)
T ss_pred EEECCCCcEE
Confidence 5 54 6644
No 201
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.01 E-value=0.0045 Score=39.77 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=18.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHc
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYEL 34 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~ 34 (102)
-++.|+.+|||.|++....+++.
T Consensus 66 vll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHH
Confidence 46678899999999887776554
No 202
>PRK10542 glutathionine S-transferase; Provisional
Probab=96.95 E-value=0.005 Score=39.99 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=47.7
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE-CCEEEechHHHHhHH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI-GGRYVGSAKDVISLH 85 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi-~g~~igg~~~~~~~~ 85 (102)
.+|+.+. +.+.++.-+|+++|++|+.+.++.........+.+...+....+|++.+ ||..+-...-+.++.
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL 73 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYL 73 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHH
Confidence 4666553 4577888899999999998888764221000123455566789999986 667777777666654
No 203
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=96.93 E-value=0.0038 Score=36.09 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=28.1
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHcC-----CCcEEEEeccCCC-cHHHHHHH
Q 037937 9 SKKAAVIFTKSSCCMCHSIKTLFYELG-----ASPAIHELDQDAN-GREIEWAL 56 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~~~~~~l~~~~-----v~~~~~~vd~~~~-~~~~~~~l 56 (102)
...-++.|+.+|||.|++....|.+.. -.+..+-|+.++. ..++.+.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~ 72 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFL 72 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHH
Confidence 344577889999999997776665432 1234444444443 33343333
No 204
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0045 Score=41.50 Aligned_cols=61 Identities=25% Similarity=0.323 Sum_probs=43.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEE
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYV 75 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~i 75 (102)
...|.||+..+|-.|...-+.|++.|.--.+.-++...... .+++ .+.-++|.||+||+.+
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f---~~~~--~~V~SvP~Vf~DGel~ 70 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPF---LAFE--KGVISVPSVFIDGELV 70 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChH---HHhh--cceeecceEEEcCeEE
Confidence 44799999999999999999999999854433333221111 1222 3668999999999976
No 205
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.90 E-value=0.0035 Score=38.97 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.0
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLF 31 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l 31 (102)
+++|+++|||+|++..+..
T Consensus 27 mv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 27 MVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred EEEEeCCcCHhHHHHHHHh
Confidence 4568889999999886653
No 206
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=96.89 E-value=0.0022 Score=44.18 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=42.8
Q ss_pred CCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHh
Q 037937 20 SCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVIS 83 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~ 83 (102)
-.|||-++..+|...++||+.++-... ..+...++|-|-.||+++.+.+-+..
T Consensus 60 LSPfClKvEt~lR~~~IpYE~~~~~~~-----------~rSr~G~lPFIELNGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 60 LSPFCLKVETFLRAYDIPYEIVDCSLK-----------RRSRNGTLPFIELNGEHIADSDLIED 112 (281)
T ss_pred CChHHHHHHHHHHHhCCCceeccccce-----------eeccCCCcceEEeCCeeccccHHHHH
Confidence 368999999999999999998876532 12345689999999999999886554
No 207
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.0017 Score=39.72 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=28.3
Q ss_pred CCCchHHHHHHHHHH----cCCC--cEEEEeccCCCcHHHHHHHHhhCCC-CCccEEEE
Q 037937 19 SSCCMCHSIKTLFYE----LGAS--PAIHELDQDANGREIEWALRALGCN-PSVPAVFI 70 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~----~~v~--~~~~~vd~~~~~~~~~~~l~~~~g~-~tvP~ifi 70 (102)
||||+|.+|...+.+ ...+ +-.+++...+....-.-.++...+. .-+|++.-
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlr 101 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLR 101 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeE
Confidence 699999999887654 2333 4445555544432211123332333 55787763
No 208
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.84 E-value=0.0034 Score=37.12 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcC----CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELG----ASPAIHELDQDANGREIEWALRALGCNPSVPAVF 69 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~----v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if 69 (102)
.-++.|+.+|||.|++....+++.. -....+-+. +.+..+..+.+++ .+...+|.++
T Consensus 23 ~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~-~~~~~~p~~~ 83 (114)
T cd02967 23 PTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKK-HGLEAFPYVL 83 (114)
T ss_pred eEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHH-hCCCCCcEEe
Confidence 3467789999999998877776542 123444332 2233333333333 3333467654
No 209
>PTZ00102 disulphide isomerase; Provisional
Probab=96.84 E-value=0.0019 Score=47.29 Aligned_cols=23 Identities=17% Similarity=0.467 Sum_probs=19.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHc
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYEL 34 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~ 34 (102)
-++.|+.+||++|+.....|++.
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~ 400 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNEL 400 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHH
Confidence 46679999999999999888764
No 210
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.0032 Score=36.86 Aligned_cols=71 Identities=7% Similarity=0.082 Sum_probs=43.8
Q ss_pred hcCCcEEEEEcC-CCchHH------HHHHHHHHc------CC--CcEEEEeccCCCcHHHHHHHHhh-CCCCCccEEEEC
Q 037937 8 ASKKAAVIFTKS-SCCMCH------SIKTLFYEL------GA--SPAIHELDQDANGREIEWALRAL-GCNPSVPAVFIG 71 (102)
Q Consensus 8 ~~~~~v~iy~~~-~Cp~C~------~~~~~l~~~------~v--~~~~~~vd~~~~~~~~~~~l~~~-~g~~tvP~ifi~ 71 (102)
....++++|+.. -|..|. ....||+.. +. .|+++||...+......+...++ ....-.|.|.++
T Consensus 2 ~~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivve 81 (106)
T COG4837 2 VNEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVE 81 (106)
T ss_pred CceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEc
Confidence 345678899986 477775 445555432 23 45677776555444333333333 344678999999
Q ss_pred CEEEech
Q 037937 72 GRYVGSA 78 (102)
Q Consensus 72 g~~igg~ 78 (102)
|+.|+.-
T Consensus 82 deiVaeG 88 (106)
T COG4837 82 DEIVAEG 88 (106)
T ss_pred ceEeecC
Confidence 9999643
No 211
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.81 E-value=0.016 Score=36.44 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=51.7
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEech---HHHHhHH
Q 037937 9 SKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSA---KDVISLH 85 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~---~~~~~~~ 85 (102)
....+++|..|+|.=|+.-.+.|+..|++...++.+.. ..+++.+.-.....+==+.+|||.+|=|. +++..+.
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~---~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll 100 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF---LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLL 100 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH---HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHH
Confidence 45578999999999999999999999987776666532 22222221111123445789999999887 4555554
Q ss_pred HcC
Q 037937 86 VDG 88 (102)
Q Consensus 86 ~~g 88 (102)
+++
T Consensus 101 ~~~ 103 (149)
T COG3019 101 AEK 103 (149)
T ss_pred hCC
Confidence 443
No 212
>PTZ00057 glutathione s-transferase; Provisional
Probab=96.78 E-value=0.023 Score=37.36 Aligned_cols=72 Identities=10% Similarity=0.112 Sum_probs=52.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHH--HHHH--hhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIE--WALR--ALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~--~~l~--~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
++++|+.+..+.|.+++-+|+..|++|+.+.++... .+.. +.+. ..+....+|.+.+||..+....-+..+.
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~--~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENG--DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccc--hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 478999888999999999999999999998775321 1111 1112 2456679999999998887776665543
No 213
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=96.77 E-value=0.0017 Score=44.02 Aligned_cols=61 Identities=18% Similarity=0.318 Sum_probs=39.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEE---------------EEeccCCCcHHHHHHHHhhCCCC--CccEEEECCE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAI---------------HELDQDANGREIEWALRALGCNP--SVPAVFIGGR 73 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~---------------~~vd~~~~~~~~~~~l~~~~g~~--tvP~ifi~g~ 73 (102)
|.+||+.+|..|..+-+.|.++.-+..+ .|.-...+..+.+.......|.+ ..|++++||+
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 6799999999999999999877543222 22222233333344444444443 4599999996
No 214
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.73 E-value=0.0053 Score=39.28 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=30.3
Q ss_pred EEEcCCCchHHHH----HHHH---HHcCCCcEEEEeccCCCcHHHHHHHHh
Q 037937 15 IFTKSSCCMCHSI----KTLF---YELGASPAIHELDQDANGREIEWALRA 58 (102)
Q Consensus 15 iy~~~~Cp~C~~~----~~~l---~~~~v~~~~~~vd~~~~~~~~~~~l~~ 58 (102)
.|+..|||.|+.. +.++ ++.+.+++++=|+.+.+..++.+.+..
T Consensus 39 yFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~ 89 (157)
T KOG2501|consen 39 YFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLE 89 (157)
T ss_pred EEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHh
Confidence 3566899999954 3333 344567999999988877665555553
No 215
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.71 E-value=0.0018 Score=44.29 Aligned_cols=23 Identities=13% Similarity=0.366 Sum_probs=19.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYE 33 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~ 33 (102)
..|++|+-+.||||+++..-+..
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHHH
Confidence 35889999999999999776653
No 216
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.70 E-value=0.0091 Score=34.60 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=34.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHcCC----CcEEEEeccCCCcHHHHHHHHhhCCCC--CccEEEE
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYELGA----SPAIHELDQDANGREIEWALRALGCNP--SVPAVFI 70 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~~v----~~~~~~vd~~~~~~~~~~~l~~~~g~~--tvP~ifi 70 (102)
..-+++|+.+||+.|...+..|++..- ......+|.+... + +....|.. ++|++.+
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~-~----~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG-R----HLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH-H----HHHHcCCChhhCCEEEE
Confidence 335677888999999999999876432 2344444433321 1 22334555 8998864
No 217
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.53 E-value=0.029 Score=33.99 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=17.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHc
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYEL 34 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~ 34 (102)
-|+.|+.+|||.|.+....|+++
T Consensus 26 vvl~F~a~~C~~C~~~~p~l~~l 48 (126)
T cd03012 26 VLLDFWTYCCINCLHTLPYLTDL 48 (126)
T ss_pred EEEEEECCCCccHHHHHHHHHHH
Confidence 46678899999999776666443
No 218
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.52 E-value=0.031 Score=33.35 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=30.6
Q ss_pred EEEEEcCCCchHHHHHH-HHHHcCC------CcEEEEeccCC-CcHHHHHHHHhhCCCCCccEEE
Q 037937 13 AVIFTKSSCCMCHSIKT-LFYELGA------SPAIHELDQDA-NGREIEWALRALGCNPSVPAVF 69 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~-~l~~~~v------~~~~~~vd~~~-~~~~~~~~l~~~~g~~tvP~if 69 (102)
++.+..+||++|+...+ .|.+-.+ .|-.+.+|... ++. .+....+...+|.+.
T Consensus 21 lv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~----~~~~~~~~~~~P~~~ 81 (114)
T cd02958 21 LVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQ----RFLQSYKVDKYPHIA 81 (114)
T ss_pred EEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHH----HHHHHhCccCCCeEE
Confidence 44577789999998744 4533222 34444444332 332 244445677899884
No 219
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.026 Score=37.95 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=57.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
+..+|+.+.-|.|+++.-.++..|++++.+.++.... .+...++.......+||++.-+|-.+-....+..+..
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~g-e~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~ 75 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKG-EQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLA 75 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeecccc-ccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHH
Confidence 4679999999999999999999999999987765432 1222345566777899999999888877777666543
No 220
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.01 Score=40.79 Aligned_cols=57 Identities=25% Similarity=0.357 Sum_probs=41.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCc-----EEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASP-----AIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYV 75 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~-----~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~i 75 (102)
-++=|+.+||..|+++..+|..+.-.| -.+|||..... ..-.|....|+. |.||..|
T Consensus 24 v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~t-------aa~~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 24 VVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGT-------AATNGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred EEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhch-------hhhcCcccCceEEEEecCeEe
Confidence 366799999999999999998875444 45666654332 223577788875 7899765
No 221
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.32 E-value=0.038 Score=34.09 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=16.5
Q ss_pred cEEEEEcC-CCchHHHHHHHHHH
Q 037937 12 AAVIFTKS-SCCMCHSIKTLFYE 33 (102)
Q Consensus 12 ~v~iy~~~-~Cp~C~~~~~~l~~ 33 (102)
.|+.|+.+ |||.|+.....|++
T Consensus 31 ~vv~f~~~~~Cp~C~~~~p~l~~ 53 (146)
T PF08534_consen 31 VVVNFWASAWCPPCRKELPYLNE 53 (146)
T ss_dssp EEEEEESTTTSHHHHHHHHHHHH
T ss_pred EEEEEEccCCCCcchhhhhhHHh
Confidence 46778888 99999977655543
No 222
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.15 E-value=0.0056 Score=43.32 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=37.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEE----EeccCCCcHHHHHHHHhhCCCCCccEE-EECCEE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIH----ELDQDANGREIEWALRALGCNPSVPAV-FIGGRY 74 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~----~vd~~~~~~~~~~~l~~~~g~~tvP~i-fi~g~~ 74 (102)
.+-|+.|||.+|++...++++.|.+...+ .|...+..+- .++....|.+.+|+| |..|.+
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f--~aiAnefgiqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF--PAIANEFGIQGYPTIKFFKGDH 111 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc--hhhHhhhccCCCceEEEecCCe
Confidence 67789999999999999998877654322 2222222211 234444577888888 444433
No 223
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.08 E-value=0.0016 Score=39.83 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=23.6
Q ss_pred CCCchHHHHHHHHHH----cCCCcE--EEEeccCCCcHHHHHHHHh--hCCCCCccEEEE
Q 037937 19 SSCCMCHSIKTLFYE----LGASPA--IHELDQDANGREIEWALRA--LGCNPSVPAVFI 70 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~----~~v~~~--~~~vd~~~~~~~~~~~l~~--~~g~~tvP~ifi 70 (102)
+|||+|.+|...+++ ..-... .+.+...+....-.-.++. ......+|+++-
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 599999999877643 222344 3444332111000001222 245578999973
No 224
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.03 E-value=0.016 Score=43.68 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHc
Q 037937 13 AVIFTKSSCCMCHSIKTLFYEL 34 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~ 34 (102)
++.|+.+|||.|++....|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 6679999999999988877654
No 225
>smart00594 UAS UAS domain.
Probab=96.03 E-value=0.078 Score=32.19 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=30.4
Q ss_pred cEEEEEcCCCchHHHHHH-HHHHcCC------CcEEEEeccC-CCcHHHHHHHHhhCCCCCccEEEE
Q 037937 12 AAVIFTKSSCCMCHSIKT-LFYELGA------SPAIHELDQD-ANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~-~l~~~~v------~~~~~~vd~~-~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
.++.+..+||++|+...+ +|.+-.+ .|-..-+|.. +++. .+....+..++|.+.+
T Consensus 30 ~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~----~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 30 LWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQ----RVSQFYKLDSFPYVAI 92 (122)
T ss_pred EEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHH----HHHHhcCcCCCCEEEE
Confidence 456677789999996533 3433221 2333333322 2222 2444566778998854
No 226
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.024 Score=36.50 Aligned_cols=19 Identities=21% Similarity=0.646 Sum_probs=16.6
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLF 31 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l 31 (102)
+.||.+++|+||.+.++-+
T Consensus 46 llmfes~~C~yC~~~KKd~ 64 (182)
T COG2143 46 LLMFESNGCSYCERFKKDL 64 (182)
T ss_pred EEEEcCCCChHHHHHHHhh
Confidence 7899999999999887665
No 227
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.99 E-value=0.014 Score=35.48 Aligned_cols=34 Identities=29% Similarity=0.547 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEec
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGASPAIHELD 44 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd 44 (102)
..+.+|++|.|+-|+-+..+|++..-+|+..-|+
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVN 36 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVN 36 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEE
Confidence 4678999999999999999999888777665443
No 228
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.82 E-value=0.036 Score=41.12 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=51.9
Q ss_pred cCCCchHHHHHHHHHHcC--C-CcEEEEeccCCCcHH-HHHHHHhhCCC--CCccEEEE-------CCEEEechHHHHhH
Q 037937 18 KSSCCMCHSIKTLFYELG--A-SPAIHELDQDANGRE-IEWALRALGCN--PSVPAVFI-------GGRYVGSAKDVISL 84 (102)
Q Consensus 18 ~~~Cp~C~~~~~~l~~~~--v-~~~~~~vd~~~~~~~-~~~~l~~~~g~--~tvP~ifi-------~g~~igg~~~~~~~ 84 (102)
+..|||=.++.-+-+.+. . +|++..|...|+.++ +.+.+....|+ ..-|.|.- .|-.+||++|++++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 468999999988777654 3 489999999988765 44445554554 57799964 67899999999987
Q ss_pred HH
Q 037937 85 HV 86 (102)
Q Consensus 85 ~~ 86 (102)
.+
T Consensus 81 ~~ 82 (452)
T cd05295 81 AE 82 (452)
T ss_pred HH
Confidence 64
No 229
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=95.79 E-value=0.05 Score=33.53 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCcEEEEeccCCCcH----HHHHHHHhhCCCCCccEEEECCEEE--echHHHHhH
Q 037937 26 SIKTLFYELGASPAIHELDQDANGR----EIEWALRALGCNPSVPAVFIGGRYV--GSAKDVISL 84 (102)
Q Consensus 26 ~~~~~l~~~~v~~~~~~vd~~~~~~----~~~~~l~~~~g~~tvP~ifi~g~~i--gg~~~~~~~ 84 (102)
.+..+|++.|++...+++.++|..- .+.+.|.. .|...+|.++|||+.+ |.+-...++
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~-~G~e~LPitlVdGeiv~~G~YPt~eEl 94 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQT-EGAEALPITLVDGEIVKTGRYPTNEEL 94 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHH-H-GGG-SEEEETTEEEEESS---HHHH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHH-cCcccCCEEEECCEEEEecCCCCHHHH
Confidence 5567788999999999999998752 25554543 4668899999999875 666544433
No 230
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.0056 Score=45.68 Aligned_cols=27 Identities=22% Similarity=0.440 Sum_probs=22.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCc
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASP 38 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~ 38 (102)
-.+-|++|||++|++...++++++-.|
T Consensus 387 VLvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 387 VLVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred eEEEEcCcccchhhhhhhHHHHHHHHh
Confidence 366799999999999999998876544
No 231
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.77 E-value=0.011 Score=36.43 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHH
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYE 33 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~ 33 (102)
+..|++|+.+.||+|.+....+.+
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 457889999999999988777665
No 232
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=95.76 E-value=0.096 Score=29.16 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=42.9
Q ss_pred CCchHHHHHHHHHHcCCC---cEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE-CCEEEechHHHHhHH
Q 037937 20 SCCMCHSIKTLFYELGAS---PAIHELDQDANGREIEWALRALGCNPSVPAVFI-GGRYVGSAKDVISLH 85 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~v~---~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi-~g~~igg~~~~~~~~ 85 (102)
--|.|-++..+|+-.+.+ ++++.... +.. +....+|.+.. +|+.+.|+.++.++.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~~----------Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-PWL----------SPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-CCc----------CCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 478999999999999998 55555442 221 23468999999 999999999998764
No 233
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=95.67 E-value=0.07 Score=35.07 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=28.8
Q ss_pred hhcCCcEEEEEcCCCchHHHHHHHHH---HcCCCc------EEEEeccC
Q 037937 7 LASKKAAVIFTKSSCCMCHSIKTLFY---ELGASP------AIHELDQD 46 (102)
Q Consensus 7 ~~~~~~v~iy~~~~Cp~C~~~~~~l~---~~~v~~------~~~~vd~~ 46 (102)
+.....++-|+.+|||.|+.-..+|. +.|++. ..+++|..
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 34445688899999999997777765 456777 66676653
No 234
>PLN02412 probable glutathione peroxidase
Probab=95.62 E-value=0.1 Score=33.35 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=14.1
Q ss_pred cEEEEEcCCCchHHHHHHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLF 31 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l 31 (102)
-|+.|+.+|||.|.+-..-|
T Consensus 32 vlv~f~a~~C~~c~~e~~~l 51 (167)
T PLN02412 32 LLIVNVASKCGLTDSNYKEL 51 (167)
T ss_pred EEEEEeCCCCCChHHHHHHH
Confidence 35558899999999643333
No 235
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.53 E-value=0.045 Score=39.72 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=18.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHc
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYEL 34 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~ 34 (102)
-++.|+.+||++|+.....+.+.
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~~ 389 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEEL 389 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHHH
Confidence 46679999999999888877653
No 236
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.42 E-value=0.058 Score=38.29 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=40.6
Q ss_pred HHhhhcCCcE--EEEEcCCCchHHHHHHHHHHcCCCc-------E--EEEeccCCCcHHHHHHHHhhCCCCCccEE--EE
Q 037937 4 VRDLASKKAA--VIFTKSSCCMCHSIKTLFYELGASP-------A--IHELDQDANGREIEWALRALGCNPSVPAV--FI 70 (102)
Q Consensus 4 v~~~~~~~~v--~iy~~~~Cp~C~~~~~~l~~~~v~~-------~--~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi 70 (102)
+..++..+.+ +-|+.+|||+++..+.+|.+....| . .=.||-+.+ ..+...+....+|++ |.
T Consensus 6 ~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-----~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 6 IDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-----DDIADKYHINKYPTLKVFR 80 (375)
T ss_pred HHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-----hHHhhhhccccCceeeeee
Confidence 4556666654 4599999999999999997754321 1 112222211 234444555667765 88
Q ss_pred CCEEE
Q 037937 71 GGRYV 75 (102)
Q Consensus 71 ~g~~i 75 (102)
||...
T Consensus 81 nG~~~ 85 (375)
T KOG0912|consen 81 NGEMM 85 (375)
T ss_pred ccchh
Confidence 88643
No 237
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.38 E-value=0.085 Score=34.84 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=15.4
Q ss_pred cEEEEEcCCCchHHHHHHHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFY 32 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~ 32 (102)
-++.|+.+|||.|.+-...|.
T Consensus 42 vlv~fwAswC~~C~~e~p~L~ 62 (199)
T PTZ00056 42 LMITNSASKCGLTKKHVDQMN 62 (199)
T ss_pred EEEEEECCCCCChHHHHHHHH
Confidence 466789999999986444443
No 238
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.33 E-value=0.067 Score=33.52 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=15.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYE 33 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~ 33 (102)
-++.|+.+||| |.+-...|.+
T Consensus 25 vvl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 25 LLIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEEcCCCC-chHHHHHHHH
Confidence 45668999999 9876565554
No 239
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.23 Score=33.27 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=55.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHH
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~ 85 (102)
....+++-+....|.-++.+|.-.|++|+...+...+... .++......++|.+-|||..+.....+..+.
T Consensus 2 ~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~----~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 2 PPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWE----ELKDKMPFGQLPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred CceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchh----hhcccCCCCCCCEEeECCEeeccHHHHHHHH
Confidence 3456677788999999999999999999999998765422 2444456779999999999988877666554
No 240
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.29 E-value=0.094 Score=42.73 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=18.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHc
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYEL 34 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~ 34 (102)
-++-|+.+|||.|+.....|+++
T Consensus 423 vll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 423 VILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred EEEEEECCcChhHHhHhHHHHHH
Confidence 36669999999999887777644
No 241
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.047 Score=39.73 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=45.0
Q ss_pred hhHHhhhcCCcEEEEEcCCCchHHHHHHHHHH---cCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEech
Q 037937 2 DRVRDLASKKAAVIFTKSSCCMCHSIKTLFYE---LGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSA 78 (102)
Q Consensus 2 ~~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~---~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~ 78 (102)
+.|+.+-.+..+.-|.+-+|..|..+.+.|.- ++-.....-||-. -++++... -+...||+||.||+..|.-
T Consensus 109 eqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa----~Fq~Evea-r~IMaVPtvflnGe~fg~G 183 (520)
T COG3634 109 EQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGA----LFQDEVEA-RNIMAVPTVFLNGEEFGQG 183 (520)
T ss_pred HHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecch----hhHhHHHh-ccceecceEEEcchhhccc
Confidence 44556656667888888888888766666554 4444555555532 12222221 2457899999999987643
No 242
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.08 E-value=0.16 Score=30.91 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=16.4
Q ss_pred CCcEEEEEcCCCch-HHHHHHHHH
Q 037937 10 KKAAVIFTKSSCCM-CHSIKTLFY 32 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~-C~~~~~~l~ 32 (102)
...|+.|+.+|||+ |.+....|.
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~ 46 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLA 46 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHH
Confidence 33577789999998 986555543
No 243
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=94.96 E-value=0.048 Score=35.17 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=27.4
Q ss_pred EEEEEcCCCchHHHHHH-HHHHcC------CCcEEEEeccC--CCcHH-HHHHHHhhCCCCCccEE-EE--CCEEE
Q 037937 13 AVIFTKSSCCMCHSIKT-LFYELG------ASPAIHELDQD--ANGRE-IEWALRALGCNPSVPAV-FI--GGRYV 75 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~-~l~~~~------v~~~~~~vd~~--~~~~~-~~~~l~~~~g~~tvP~i-fi--~g~~i 75 (102)
++-++.++|.+|+.+.. .|.+-. -.|--+.+|.+ |+... .....+.++|....|.. |+ +|+.+
T Consensus 41 fl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 41 FLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp EEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred EEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 33467799999996543 333222 23444445543 33333 22233334566677754 43 45544
No 244
>PTZ00256 glutathione peroxidase; Provisional
Probab=94.82 E-value=0.14 Score=33.16 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 037937 14 VIFTKSSCCMCHSIKTLFY 32 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~ 32 (102)
++++.+|||.|.+-...|.
T Consensus 46 v~n~atwCp~C~~e~p~l~ 64 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLV 64 (183)
T ss_pred EEEECCCCCchHHHHHHHH
Confidence 4568999999997544443
No 245
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=94.80 E-value=0.24 Score=31.50 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=15.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHH
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFY 32 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~ 32 (102)
..++.|+.+|||.|.+...-|.
T Consensus 27 ~~ll~f~~t~Cp~c~~~~~~l~ 48 (171)
T cd02969 27 ALVVMFICNHCPYVKAIEDRLN 48 (171)
T ss_pred EEEEEEECCCCccHHHHHHHHH
Confidence 3467788899999986544443
No 246
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.057 Score=38.96 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=37.5
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHcC----CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 9 SKKAAVIFTKSSCCMCHSIKTLFYELG----ASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~~~~~~l~~~~----v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
...-++.|..|||++|.+....+.+.. -......||.+.. ..+.+.++...+|++.+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~-----~~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH-----KDLCEKYGIQGFPTLKV 107 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh-----HHHHHhcCCccCcEEEE
Confidence 344688999999999998877766442 2234444543332 23556678888998853
No 247
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.75 E-value=0.035 Score=35.22 Aligned_cols=25 Identities=16% Similarity=0.382 Sum_probs=20.0
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHH
Q 037937 9 SKKAAVIFTKSSCCMCHSIKTLFYE 33 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~~~~~~l~~ 33 (102)
.+..|+.|+...||+|.++...+.+
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHH
Confidence 3557889999999999988776643
No 248
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=94.66 E-value=0.2 Score=34.20 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=16.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHH
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLF 31 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l 31 (102)
..-|+.|+.+|||.|..-...|
T Consensus 100 K~vvl~FwAswCp~c~~e~p~L 121 (236)
T PLN02399 100 KVLLIVNVASKCGLTSSNYSEL 121 (236)
T ss_pred CeEEEEEEcCCCcchHHHHHHH
Confidence 3457789999999998644444
No 249
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.62 E-value=0.076 Score=40.40 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=52.9
Q ss_pred hHHhhhcCCc----EEEEEcCCCchHHHHHHHHHH-c-----CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE-C
Q 037937 3 RVRDLASKKA----AVIFTKSSCCMCHSIKTLFYE-L-----GASPAIHELDQDANGREIEWALRALGCNPSVPAVFI-G 71 (102)
Q Consensus 3 ~v~~~~~~~~----v~iy~~~~Cp~C~~~~~~l~~-~-----~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi-~ 71 (102)
++++...+++ .+=|+.+||-.|+..++..-+ - -..+.....|-..+..+.++.|++. |.-.+|.+++ +
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~-~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRL-GVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHc-CCCCCCEEEEEC
Confidence 4555555555 334999999999988776421 1 1234555666555556666767664 5577888753 3
Q ss_pred --CEEEechHHHHhHHHcCcHHHHHHhc
Q 037937 72 --GRYVGSAKDVISLHVDGSLKQMLIDA 97 (102)
Q Consensus 72 --g~~igg~~~~~~~~~~g~L~~~l~~~ 97 (102)
|...-. +-.....+.+.+.|+++
T Consensus 543 ~~g~e~~~---l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 543 PQGSEPEI---LTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCcCcC---CcceecHHHHHHHHHHh
Confidence 332211 33333445566666543
No 250
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=94.45 E-value=0.32 Score=28.76 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=32.2
Q ss_pred HhhhcCCcEEEEEcC-CCchHHHHHHHHHHc----C-CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 5 RDLASKKAAVIFTKS-SCCMCHSIKTLFYEL----G-ASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 5 ~~~~~~~~v~iy~~~-~Cp~C~~~~~~l~~~----~-v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
.++.....++.|+.+ |||.|.....-|.+. . ..+..+-|..++.. ++.+.++... ..+|.+.-
T Consensus 21 ~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~-~~~~~~~~~~--~~~~~~~D 89 (124)
T PF00578_consen 21 SDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE-EIKQFLEEYG--LPFPVLSD 89 (124)
T ss_dssp GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH-HHHHHHHHHT--CSSEEEEE
T ss_pred HHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc-chhhhhhhhc--cccccccC
Confidence 344333345666666 999998665554432 2 13455555554332 3333333332 45565543
No 251
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.37 E-value=0.044 Score=34.14 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=16.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHH
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLF 31 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l 31 (102)
+..|++|....||+|.+....+
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHH
T ss_pred CeEEEEEECCCCHhHHHHHHHH
Confidence 3468999999999999775554
No 252
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=94.33 E-value=0.17 Score=30.96 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=14.9
Q ss_pred cEEEEE-cCCCchHHHHHHHHHH
Q 037937 12 AAVIFT-KSSCCMCHSIKTLFYE 33 (102)
Q Consensus 12 ~v~iy~-~~~Cp~C~~~~~~l~~ 33 (102)
.+++|. .+|||.|++-..-|.+
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~ 48 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSK 48 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHH
Confidence 445554 6899999976555543
No 253
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=94.30 E-value=0.15 Score=30.30 Aligned_cols=71 Identities=10% Similarity=0.183 Sum_probs=42.4
Q ss_pred EEEcCCCchHHHHHHHHHHcCC--CcEEEEeccCCCcHHHHHHHHhhC--CCCCccEEEECCE-EEechHHHHhHHHc
Q 037937 15 IFTKSSCCMCHSIKTLFYELGA--SPAIHELDQDANGREIEWALRALG--CNPSVPAVFIGGR-YVGSAKDVISLHVD 87 (102)
Q Consensus 15 iy~~~~Cp~C~~~~~~l~~~~v--~~~~~~vd~~~~~~~~~~~l~~~~--g~~tvP~ifi~g~-~igg~~~~~~~~~~ 87 (102)
||+-..||.|.....++.+... .++.+++...++..-. +.. ..+ ...+.-.+.-+|+ ...|.+-+..+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALL-ASY-GISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHH-Hhc-CcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 4677899999999999998864 4666777433222100 000 011 1123334434776 88999877776644
No 254
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=94.15 E-value=0.088 Score=36.49 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=47.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC---CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEEechHHHHhH---
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELG---ASPAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYVGSAKDVISL--- 84 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~---v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~igg~~~~~~~--- 84 (102)
|+-++.+++|-|..+-..|..+. .....+.|...... +........+|+| |.+|..++.+-.+.++
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~------~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~ 223 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP------ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGD 223 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC------TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-T
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC------cccCCcccCCCEEEEEECCEEEEeEEehHHhcCC
Confidence 55688899999998888876553 22344444332211 0111234678987 5699877655333222
Q ss_pred -HHcCcHHHHHHhcccc
Q 037937 85 -HVDGSLKQMLIDARAI 100 (102)
Q Consensus 85 -~~~g~L~~~l~~~g~~ 100 (102)
+...+|+.+|...|+|
T Consensus 224 df~~~dlE~~L~~~G~l 240 (265)
T PF02114_consen 224 DFFTEDLEAFLIEYGVL 240 (265)
T ss_dssp T--HHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 3344799999999986
No 255
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.05 E-value=0.048 Score=30.91 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=16.1
Q ss_pred EEcCCCchHHHHHHHHHHcC
Q 037937 16 FTKSSCCMCHSIKTLFYELG 35 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~~~ 35 (102)
|+++|||+|+.....|.+..
T Consensus 39 f~~~~C~~C~~~~~~l~~~~ 58 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEELA 58 (127)
T ss_pred EEcCcCHHHHhhchhHHHHH
Confidence 36999999999988886543
No 256
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=93.80 E-value=0.25 Score=31.59 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=14.1
Q ss_pred CcEEE-EE-cCCCchHHHHHHHHH
Q 037937 11 KAAVI-FT-KSSCCMCHSIKTLFY 32 (102)
Q Consensus 11 ~~v~i-y~-~~~Cp~C~~~~~~l~ 32 (102)
..++| |+ .+|||.|......|.
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l~ 53 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAFS 53 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHHH
Confidence 34444 44 679999997655553
No 257
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=93.41 E-value=0.29 Score=31.86 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=12.9
Q ss_pred cEEEEE--cCCCchHHHHHHHH
Q 037937 12 AAVIFT--KSSCCMCHSIKTLF 31 (102)
Q Consensus 12 ~v~iy~--~~~Cp~C~~~~~~l 31 (102)
.+++|. ..|||.|..-...|
T Consensus 33 ~vvl~F~p~~~cp~C~~el~~l 54 (187)
T TIGR03137 33 WSVFFFYPADFTFVCPTELEDL 54 (187)
T ss_pred EEEEEEECCCcCCcCHHHHHHH
Confidence 444444 68999999644333
No 258
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=93.09 E-value=0.092 Score=36.50 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=56.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHc
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVD 87 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~ 87 (102)
..++|-.|..-.+++++-.+.++|++++.++|+-. .++....-+-+++....||++.-+...|-...+++++.+.
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~-~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLP-QGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCc-cccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 37789999999999999999999999999998752 2222222344444456799776666678888999888765
No 259
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=92.91 E-value=0.14 Score=32.07 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=14.8
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLF 31 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l 31 (102)
++.|+.+|||+|.+...-|
T Consensus 26 vv~~~as~C~~c~~~~~~l 44 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRAL 44 (153)
T ss_pred EEEEeCCCCCchhhhHHHH
Confidence 6789999999998655433
No 260
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=92.49 E-value=0.18 Score=30.86 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=21.0
Q ss_pred hCCCCCccEEEECCEEEechHHHHhH
Q 037937 59 LGCNPSVPAVFIGGRYVGSAKDVISL 84 (102)
Q Consensus 59 ~~g~~tvP~ifi~g~~igg~~~~~~~ 84 (102)
..|...+|+++|||+.+-|..+...+
T Consensus 124 ~~gi~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 124 ALGITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred HcCCCcCCeEEECCEEecCCCCHHHH
Confidence 35778999999999999998765544
No 261
>PRK13190 putative peroxiredoxin; Provisional
Probab=92.25 E-value=0.35 Score=31.97 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=11.5
Q ss_pred EEcCCCchHHHHHHHH
Q 037937 16 FTKSSCCMCHSIKTLF 31 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l 31 (102)
|..+|||.|..-...|
T Consensus 35 ~p~~~cp~C~~El~~l 50 (202)
T PRK13190 35 HPADFTPVCTTEFIAF 50 (202)
T ss_pred EcCCCCCCCHHHHHHH
Confidence 6778999998544444
No 262
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.98 E-value=0.49 Score=35.90 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=36.0
Q ss_pred hhhcCCcEEEEEcCCCchHHHHHHHHHHcC-----CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 6 DLASKKAAVIFTKSSCCMCHSIKTLFYELG-----ASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 6 ~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
++..+-.+.+|+.+.|++|..++++|++.. +.++.+|...+ . .+.+.++..-+|.+.+
T Consensus 363 ~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~--~-----~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 363 RLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE--P-----ESETLPKITKLPTVAL 425 (555)
T ss_pred hcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccc--h-----hhHhhcCCCcCCEEEE
Confidence 333333577799899999999999998753 23333333222 1 1222345667898876
No 263
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=91.87 E-value=0.2 Score=31.14 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=18.6
Q ss_pred hCCCCCccEEEECCEEEechHHHHh
Q 037937 59 LGCNPSVPAVFIGGRYVGSAKDVIS 83 (102)
Q Consensus 59 ~~g~~tvP~ifi~g~~igg~~~~~~ 83 (102)
..|...+|+++|||+.+.|..++.+
T Consensus 131 ~~~i~~tPt~~inG~~~~~~~~~~~ 155 (162)
T PF13462_consen 131 QLGITGTPTFFINGKYVVGPYTIEE 155 (162)
T ss_dssp HHT-SSSSEEEETTCEEETTTSHHH
T ss_pred HcCCccccEEEECCEEeCCCCCHHH
Confidence 3567899999999999987654433
No 264
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=91.73 E-value=0.53 Score=30.14 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=21.5
Q ss_pred hCCCCCccEEEECCEEEechHHHHhH
Q 037937 59 LGCNPSVPAVFIGGRYVGSAKDVISL 84 (102)
Q Consensus 59 ~~g~~tvP~ifi~g~~igg~~~~~~~ 84 (102)
..|...+|+++|||+.+-|.+.+..+
T Consensus 162 ~~gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 162 ARGVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HcCCCcCCeEEECCeeecccccHHHH
Confidence 35788999999999999898876554
No 265
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=91.58 E-value=0.89 Score=30.28 Aligned_cols=45 Identities=13% Similarity=0.264 Sum_probs=34.0
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHH
Q 037937 9 SKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIE 53 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~ 53 (102)
...++.+|.+..||.|......+-..+-++..+-|++..+...++
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir 152 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIR 152 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHH
Confidence 344789999999999998777777777888888888554544443
No 266
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.51 Score=34.07 Aligned_cols=26 Identities=19% Similarity=0.315 Sum_probs=20.0
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHc
Q 037937 9 SKKAAVIFTKSSCCMCHSIKTLFYEL 34 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~~~~~~l~~~ 34 (102)
+...++.|+.|||++|++....+++.
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~ 187 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKL 187 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHH
Confidence 34468889999999999886666544
No 267
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=91.31 E-value=0.49 Score=31.21 Aligned_cols=30 Identities=10% Similarity=0.011 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHH-------HHHcCCCcEEEEec
Q 037937 15 IFTKSSCCMCHSIKTL-------FYELGASPAIHELD 44 (102)
Q Consensus 15 iy~~~~Cp~C~~~~~~-------l~~~~v~~~~~~vd 44 (102)
.|..+|||.|..-..- |++.|+.+--+.+|
T Consensus 32 ~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D 68 (203)
T cd03016 32 SHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD 68 (203)
T ss_pred EecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3666799999864433 34455554444444
No 268
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.16 E-value=0.097 Score=39.85 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=36.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCC----cEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGAS----PAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~----~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
.++-|..+||++|++....+++...+ ..++.|..-+.+.+.-..+.+..+.+.+|++.-
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlry 122 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRY 122 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeee
Confidence 46678889999999998888876543 122333322222221134555567788998853
No 269
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=90.77 E-value=1.6 Score=28.02 Aligned_cols=72 Identities=8% Similarity=0.122 Sum_probs=47.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhh--CCC--------------------CCccEE--
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRAL--GCN--------------------PSVPAV-- 68 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~--~g~--------------------~tvP~i-- 68 (102)
|+|=+++.-+.-+++..+|+++|++|+..-++-+...+.+.+..+.. .|. +++|.|
T Consensus 7 IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGV 86 (162)
T COG0041 7 IIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGV 86 (162)
T ss_pred EEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEec
Confidence 44455667788899999999999999999888776654443333221 111 455655
Q ss_pred EECCEEEechHHHHhH
Q 037937 69 FIGGRYVGSAKDVISL 84 (102)
Q Consensus 69 fi~g~~igg~~~~~~~ 84 (102)
-+..+..+|.|.+...
T Consensus 87 Pv~s~~L~GlDSL~Si 102 (162)
T COG0041 87 PVQSKALSGLDSLLSI 102 (162)
T ss_pred cCccccccchHHHHHH
Confidence 3566677777766544
No 270
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=90.62 E-value=0.69 Score=28.00 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=12.1
Q ss_pred EEEEE-cCCCchHHHHHHHH
Q 037937 13 AVIFT-KSSCCMCHSIKTLF 31 (102)
Q Consensus 13 v~iy~-~~~Cp~C~~~~~~l 31 (102)
++.|+ ..|||.|.....-|
T Consensus 27 ll~f~~~~~cp~C~~~~~~l 46 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDF 46 (140)
T ss_pred EEEEeCCCCCCchHHHHHHH
Confidence 44455 57899998644333
No 271
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=90.50 E-value=0.94 Score=27.70 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=16.9
Q ss_pred hhhcCCcEEEEEcCC-CchHHHHHHHHHH
Q 037937 6 DLASKKAAVIFTKSS-CCMCHSIKTLFYE 33 (102)
Q Consensus 6 ~~~~~~~v~iy~~~~-Cp~C~~~~~~l~~ 33 (102)
+......|+.|+.+| ||.|.+-...|.+
T Consensus 23 ~~~gk~vvl~f~~~~~c~~C~~e~~~l~~ 51 (143)
T cd03014 23 DFAGKVKVISVFPSIDTPVCATQTKRFNK 51 (143)
T ss_pred HhCCCeEEEEEEcCCCCCcCHHHHHHHHH
Confidence 333333455566666 7999977666543
No 272
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=90.30 E-value=0.32 Score=32.13 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=17.3
Q ss_pred hCCCCCccEEEECCEEEechHH
Q 037937 59 LGCNPSVPAVFIGGRYVGSAKD 80 (102)
Q Consensus 59 ~~g~~tvP~ifi~g~~igg~~~ 80 (102)
..|...+|+++|||+++-+...
T Consensus 162 ~~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 162 DLQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred HcCCCCCCEEEECCEEEEcccc
Confidence 4577899999999999755443
No 273
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=90.11 E-value=1.2 Score=27.32 Aligned_cols=48 Identities=21% Similarity=0.443 Sum_probs=30.7
Q ss_pred CCchHH-----------HHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEE
Q 037937 20 SCCMCH-----------SIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYV 75 (102)
Q Consensus 20 ~Cp~C~-----------~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~i 75 (102)
.|+.|. .++..|...|+......+..++.. +.... -+.|.|.|||+.+
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~------~~~~~--~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEE------FARQP--LESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHH------Hhhcc--cCCCeeeECCEeh
Confidence 899987 445556778887655555443321 22111 5789999999976
No 274
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=89.96 E-value=0.53 Score=28.90 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=13.4
Q ss_pred EEEEE-cCCCchHHHHHHHHH
Q 037937 13 AVIFT-KSSCCMCHSIKTLFY 32 (102)
Q Consensus 13 v~iy~-~~~Cp~C~~~~~~l~ 32 (102)
|++|+ .+|||.|.+...-|.
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~ 52 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALR 52 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHH
Confidence 44454 789999996654443
No 275
>PRK15000 peroxidase; Provisional
Probab=89.66 E-value=1.4 Score=29.04 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=14.0
Q ss_pred CCcEEEEEcC--CCchHHHHHHHH
Q 037937 10 KKAAVIFTKS--SCCMCHSIKTLF 31 (102)
Q Consensus 10 ~~~v~iy~~~--~Cp~C~~~~~~l 31 (102)
...+++|..| +||.|..-..-|
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l 57 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAF 57 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHH
Confidence 4456665555 799999644444
No 276
>PRK13189 peroxiredoxin; Provisional
Probab=89.58 E-value=0.96 Score=30.41 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=9.4
Q ss_pred EEcCCCchHHHH
Q 037937 16 FTKSSCCMCHSI 27 (102)
Q Consensus 16 y~~~~Cp~C~~~ 27 (102)
|..+|||.|..-
T Consensus 43 ~pa~fcpvC~tE 54 (222)
T PRK13189 43 HPADFTPVCTTE 54 (222)
T ss_pred eCCCCCCCCHHH
Confidence 556899999853
No 277
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=89.27 E-value=0.57 Score=28.36 Aligned_cols=21 Identities=19% Similarity=0.293 Sum_probs=13.7
Q ss_pred cEEEEE-cCCCchHHHHHHHHH
Q 037937 12 AAVIFT-KSSCCMCHSIKTLFY 32 (102)
Q Consensus 12 ~v~iy~-~~~Cp~C~~~~~~l~ 32 (102)
.++.|+ ..|||.|.....-|.
T Consensus 25 ~ll~f~~~~~c~~C~~~~~~l~ 46 (140)
T cd02971 25 VVLFFYPKDFTPVCTTELCAFR 46 (140)
T ss_pred EEEEEeCCCCCCcCHHHHHHHH
Confidence 444555 579999987655443
No 278
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=89.15 E-value=0.55 Score=29.63 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=17.1
Q ss_pred hCCCCCccEEEECCEEEechHH
Q 037937 59 LGCNPSVPAVFIGGRYVGSAKD 80 (102)
Q Consensus 59 ~~g~~tvP~ifi~g~~igg~~~ 80 (102)
..|...+|+++|||+.+-+...
T Consensus 138 ~~gi~gTPt~iInG~~~~~~~~ 159 (178)
T cd03019 138 KYKITGVPAFVVNGKYVVNPSA 159 (178)
T ss_pred HcCCCCCCeEEECCEEEEChhh
Confidence 3577899999999998755543
No 279
>PRK13599 putative peroxiredoxin; Provisional
Probab=88.91 E-value=1.1 Score=30.10 Aligned_cols=13 Identities=8% Similarity=0.092 Sum_probs=9.7
Q ss_pred EEEcCCCchHHHH
Q 037937 15 IFTKSSCCMCHSI 27 (102)
Q Consensus 15 iy~~~~Cp~C~~~ 27 (102)
.|...|||.|..-
T Consensus 35 ~~pa~~tpvCt~E 47 (215)
T PRK13599 35 SHPADFTPVCTTE 47 (215)
T ss_pred EeCCCCCCcCHHH
Confidence 4556799999863
No 280
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=88.90 E-value=0.49 Score=30.28 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=24.4
Q ss_pred cEEEEEcCCCchHHHHHHHH----HHc-CCCcEEEEecc
Q 037937 12 AAVIFTKSSCCMCHSIKTLF----YEL-GASPAIHELDQ 45 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l----~~~-~v~~~~~~vd~ 45 (102)
+|++|+...||||-.+...| ++. +++++.+.+.-
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 47899999999998665554 445 67666665553
No 281
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=88.31 E-value=1.4 Score=28.86 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=11.2
Q ss_pred EEEEE-cCCCchHHHHHH
Q 037937 13 AVIFT-KSSCCMCHSIKT 29 (102)
Q Consensus 13 v~iy~-~~~Cp~C~~~~~ 29 (102)
|+.|+ ..|||.|..-..
T Consensus 35 vL~F~P~~~~p~C~~el~ 52 (187)
T PRK10382 35 VFFFYPADFTFVCPTELG 52 (187)
T ss_pred EEEEECCCCCCcCHHHHH
Confidence 34445 689999986433
No 282
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=88.26 E-value=1.9 Score=27.51 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=20.6
Q ss_pred cEEEEEcCC-CchHHHHHHHHHHcC---CCcEEEEeccC
Q 037937 12 AAVIFTKSS-CCMCHSIKTLFYELG---ASPAIHELDQD 46 (102)
Q Consensus 12 ~v~iy~~~~-Cp~C~~~~~~l~~~~---v~~~~~~vd~~ 46 (102)
.|+.|+.+| ||.|.+-..-|.+.. -.+.++-|..+
T Consensus 47 vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D 85 (167)
T PRK00522 47 KVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISAD 85 (167)
T ss_pred EEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 456677777 999997655554321 13455555544
No 283
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=88.01 E-value=3 Score=27.28 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=33.0
Q ss_pred cCCcEEEEEcCCCchHHHHH---HHHHHcC-CCcEEEEe--cc----C-CCcHHHHHHHHhhCCCCCccEE--E-ECCEE
Q 037937 9 SKKAAVIFTKSSCCMCHSIK---TLFYELG-ASPAIHEL--DQ----D-ANGREIEWALRALGCNPSVPAV--F-IGGRY 74 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~~~~---~~l~~~~-v~~~~~~v--d~----~-~~~~~~~~~l~~~~g~~tvP~i--f-i~g~~ 74 (102)
...-+++++.+||++|.... ++.++++ -.+.++-+ ++ . ....++.+.++...| .++|.+ . ++|..
T Consensus 25 GKvvLVvf~AS~C~~~~q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g-~~Fpv~~k~dvnG~~ 103 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG-VTFPMFSKIEVNGEG 103 (183)
T ss_pred CCEEEEEEEeCCCCCcHHHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccC-CCceeEEEEccCCCC
Confidence 33456789999999997432 2222322 12344443 32 1 223445544432344 467865 2 66653
No 284
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=87.51 E-value=4.7 Score=24.92 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=9.5
Q ss_pred EEEEEc-CCCchHHHHH
Q 037937 13 AVIFTK-SSCCMCHSIK 28 (102)
Q Consensus 13 v~iy~~-~~Cp~C~~~~ 28 (102)
++.|+. .+||.|....
T Consensus 34 ll~f~~~~~~p~C~~~~ 50 (154)
T PRK09437 34 LVYFYPKAMTPGCTVQA 50 (154)
T ss_pred EEEEECCCCCCchHHHH
Confidence 444443 4799997543
No 285
>PRK13191 putative peroxiredoxin; Provisional
Probab=87.37 E-value=1.6 Score=29.25 Aligned_cols=17 Identities=12% Similarity=0.051 Sum_probs=11.9
Q ss_pred EEEcCCCchHHHHHHHH
Q 037937 15 IFTKSSCCMCHSIKTLF 31 (102)
Q Consensus 15 iy~~~~Cp~C~~~~~~l 31 (102)
.|..+|||.|..-...|
T Consensus 40 f~pa~ftpvC~tEl~~l 56 (215)
T PRK13191 40 SHPGDFTPVCTTEFYSF 56 (215)
T ss_pred EeCCCCCCcCHHHHHHH
Confidence 45677999999644444
No 286
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=87.12 E-value=4.4 Score=27.68 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=52.2
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCcE---EEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEEechHH----HHhH
Q 037937 14 VIFTKSSCCMCHSIKTLFYELGASPA---IHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYVGSAKD----VISL 84 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~~~~v~~~---~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~igg~~~----~~~~ 84 (102)
+..+.++-+-|...-..+.=+..+|. ...+..+..+.. ..+ ....+|++ +-||+.||.|-. +-+-
T Consensus 164 VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas--~~F----~~n~lP~LliYkgGeLIgNFv~va~qlged 237 (273)
T KOG3171|consen 164 VHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGAS--DRF----SLNVLPTLLIYKGGELIGNFVSVAEQLGED 237 (273)
T ss_pred EEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccch--hhh----cccCCceEEEeeCCchhHHHHHHHHHHhhh
Confidence 34556888888888887776666653 334443332211 222 22457765 679999999954 4444
Q ss_pred HHcCcHHHHHHhcccc
Q 037937 85 HVDGSLKQMLIDARAI 100 (102)
Q Consensus 85 ~~~g~L~~~l~~~g~~ 100 (102)
+..|+|...|++-|++
T Consensus 238 ffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 238 FFAGDLESFLNEYGLL 253 (273)
T ss_pred hhhhhHHHHHHHcCCC
Confidence 5679999999998874
No 287
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=86.94 E-value=3.6 Score=27.91 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=42.8
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHcCcHHHHHHh--
Q 037937 19 SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQMLID-- 96 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~g~L~~~l~~-- 96 (102)
.+-+|-.+++..|.++|.....+.+...+. +++...|.+ .=.|+|+| |.--.+++.-++--|...+++
T Consensus 46 ~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~-~~Ie~~l~~------~d~IyVgG---GNTF~LL~~lke~gld~iIr~~v 115 (224)
T COG3340 46 EDDFYVEKVRNALAKLGLEVSELHLSKPPL-AAIENKLMK------ADIIYVGG---GNTFNLLQELKETGLDDIIRERV 115 (224)
T ss_pred chHHHHHHHHHHHHHcCCeeeeeeccCCCH-HHHHHhhhh------ccEEEECC---chHHHHHHHHHHhCcHHHHHHHH
Confidence 367899999999999999888888776543 334333322 22355555 222344444444445555543
Q ss_pred -ccccc
Q 037937 97 -ARAIW 101 (102)
Q Consensus 97 -~g~~~ 101 (102)
+|++|
T Consensus 116 k~G~~Y 121 (224)
T COG3340 116 KAGTPY 121 (224)
T ss_pred HcCCce
Confidence 45444
No 288
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.73 E-value=1.7 Score=29.57 Aligned_cols=23 Identities=17% Similarity=0.233 Sum_probs=16.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYE 33 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~ 33 (102)
.+|.+|+-.-||+|---++.|++
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~k 28 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEK 28 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHH
Confidence 36788999999999755555443
No 289
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=85.60 E-value=1 Score=24.21 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=29.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGR 73 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~ 73 (102)
+.+|+.+.=.-+..++.+|++.||++...+-...... ...|..+.+.|+|..+
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~~--------g~~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGYA--------GEPGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS-----------S--SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchhh--------cccCccCceEEEECHH
Confidence 4577777777888999999999999988766543331 1124444588888775
No 290
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=85.50 E-value=3.5 Score=26.48 Aligned_cols=74 Identities=7% Similarity=0.086 Sum_probs=49.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhh----------------------CCCCCccEEE-
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRAL----------------------GCNPSVPAVF- 69 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~----------------------~g~~tvP~if- 69 (102)
|++=+.++=|+++++...|+++|++|+..-..-+.....+.+..+.. .+..++|.|=
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgv 82 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGV 82 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEe
Confidence 34445567899999999999999999887777666655544444321 2235677663
Q ss_pred -ECCEEEechHHHHhHHH
Q 037937 70 -IGGRYVGSAKDVISLHV 86 (102)
Q Consensus 70 -i~g~~igg~~~~~~~~~ 86 (102)
+.....+|.|.+..+.+
T Consensus 83 P~~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 83 PVPSKALSGLDSLLSIVQ 100 (156)
T ss_pred cCCccCCCCHHHHHHHhc
Confidence 34445677787777665
No 291
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=85.15 E-value=5.8 Score=24.74 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=32.5
Q ss_pred CCchHHHHHHHHHHc----C-CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEEech
Q 037937 20 SCCMCHSIKTLFYEL----G-ASPAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYVGSA 78 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~----~-v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~igg~ 78 (102)
.+|.+.-+--+|.+. + -......+|.+.+. .+...+|..++|++ |-||+.+|..
T Consensus 47 r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~-----~LA~~fgV~siPTLl~FkdGk~v~~i 107 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE-----AIGDRFGVFRFPATLVFTGGNYRGVL 107 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH-----HHHHHcCCccCCEEEEEECCEEEEEE
Confidence 367776665555443 3 22334444444332 35566788999987 6799987654
No 292
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=85.01 E-value=3.3 Score=27.11 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=16.2
Q ss_pred EEEEE-cCCCchHHHHHHH-------HHHcCCCcEEEEec
Q 037937 13 AVIFT-KSSCCMCHSIKTL-------FYELGASPAIHELD 44 (102)
Q Consensus 13 v~iy~-~~~Cp~C~~~~~~-------l~~~~v~~~~~~vd 44 (102)
++.|+ ..+||.|.....- |.+.|+.+--+.+|
T Consensus 40 lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d 79 (199)
T PTZ00253 40 VLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD 79 (199)
T ss_pred EEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 33444 2568888754333 33445554444444
No 293
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=84.35 E-value=0.33 Score=33.17 Aligned_cols=62 Identities=13% Similarity=0.314 Sum_probs=41.1
Q ss_pred hhhcCCcEEEEEcCCCchHHHHHHHHHHc-------CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE--ECCEE
Q 037937 6 DLASKKAAVIFTKSSCCMCHSIKTLFYEL-------GASPAIHELDQDANGREIEWALRALGCNPSVPAVF--IGGRY 74 (102)
Q Consensus 6 ~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~-------~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if--i~g~~ 74 (102)
.+.+..-.++|+.||||.|...+..+++. ++..-++|+..++...- +. -..-.|+|+ .||++
T Consensus 36 ~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsG------RF-~vtaLptIYHvkDGeF 106 (248)
T KOG0913|consen 36 ELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSG------RF-LVTALPTIYHVKDGEF 106 (248)
T ss_pred hhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccce------ee-EEEecceEEEeecccc
Confidence 33444446688999999999888888654 45567788887765421 11 124578885 67765
No 294
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=84.23 E-value=0.76 Score=30.34 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=16.5
Q ss_pred CCcEEEEEcCCCchHHHHHH
Q 037937 10 KKAAVIFTKSSCCMCHSIKT 29 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~ 29 (102)
...|+-|..-.||+|.+...
T Consensus 38 ~~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CCeEEEEeCCCCccHHHhcc
Confidence 34688999999999998654
No 295
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=84.21 E-value=6.9 Score=23.45 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=35.8
Q ss_pred CCcEEEEEcCC-CchHHHHHHHHHHc----C--CCcEEEEeccCCCcHHHHHHHHhhCCC-CCccEEE--ECCEEE
Q 037937 10 KKAAVIFTKSS-CCMCHSIKTLFYEL----G--ASPAIHELDQDANGREIEWALRALGCN-PSVPAVF--IGGRYV 75 (102)
Q Consensus 10 ~~~v~iy~~~~-Cp~C~~~~~~l~~~----~--v~~~~~~vd~~~~~~~~~~~l~~~~g~-~tvP~if--i~g~~i 75 (102)
..+++||=-++ ||-+..|.+-|++. . +++.+++|-...+. -..+++..|. =.-||++ -||+.+
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~v---Sn~IAe~~~V~HeSPQ~ili~~g~~v 91 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPV---SNAIAEDFGVKHESPQVILIKNGKVV 91 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHH---HHHHHHHHT----SSEEEEEETTEEE
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchh---HHHHHHHhCCCcCCCcEEEEECCEEE
Confidence 56788887775 99999998887543 2 77777787654332 2334443342 3467774 588765
No 296
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=83.84 E-value=3.9 Score=24.25 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.1
Q ss_pred CCchHHH-HHHHHHHcCCCcEEEEeccC
Q 037937 20 SCCMCHS-IKTLFYELGASPAIHELDQD 46 (102)
Q Consensus 20 ~Cp~C~~-~~~~l~~~~v~~~~~~vd~~ 46 (102)
.|-.|.. ++++|.+.+++.+.+.+...
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~ 47 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTG 47 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEec
Confidence 5999975 58899999999999998873
No 297
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=83.11 E-value=1.2 Score=26.57 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=14.4
Q ss_pred cEEEEEcCCCchHHHH
Q 037937 12 AAVIFTKSSCCMCHSI 27 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~ 27 (102)
+|.+|+.+-||+|++.
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 5899999999999974
No 298
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=82.59 E-value=5.9 Score=27.50 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=13.8
Q ss_pred hhhcCCcEEEEE--cCCCchHHHH
Q 037937 6 DLASKKAAVIFT--KSSCCMCHSI 27 (102)
Q Consensus 6 ~~~~~~~v~iy~--~~~Cp~C~~~ 27 (102)
+......+++|. ..|||.|..-
T Consensus 94 d~~kgk~vVL~FyPa~ftpvCt~E 117 (261)
T PTZ00137 94 DYFKDSYGLLVFYPLDFTFVCPSE 117 (261)
T ss_pred HHcCCCeEEEEEECCCCCCCCHHH
Confidence 333444566553 5799999863
No 299
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.17 E-value=2.1 Score=29.24 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=42.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCC-------cEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGAS-------PAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYV 75 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~-------~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~i 75 (102)
++-|.+.|.|.|.+....+.++.++ |-.+||..-++..+-. .....++.+++|++ |-+|+.+
T Consensus 148 lIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kf-ris~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 148 LIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKF-RISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred EEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHhe-eeccCcccccCCeEEEEccchhh
Confidence 5567889999999999998877554 5678988877754311 12223567888877 4566543
No 300
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=82.07 E-value=1.1 Score=24.26 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=14.1
Q ss_pred EEECCEEEechHHHHhHH
Q 037937 68 VFIGGRYVGSAKDVISLH 85 (102)
Q Consensus 68 ifi~g~~igg~~~~~~~~ 85 (102)
||+||.++|=.++-.++.
T Consensus 1 VFlNG~~iG~~~~p~~l~ 18 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELV 18 (63)
T ss_dssp EEETTEEEEEESSHHHHH
T ss_pred CEECCEEEEEEcCHHHHH
Confidence 799999999887655444
No 301
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=81.13 E-value=12 Score=25.17 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=51.5
Q ss_pred HhhhcCCcEE-EEEcCCCchH---HHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCE---EE
Q 037937 5 RDLASKKAAV-IFTKSSCCMC---HSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGR---YV 75 (102)
Q Consensus 5 ~~~~~~~~v~-iy~~~~Cp~C---~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~---~i 75 (102)
+...++.+|+ -|+.+.---| .+=..+|....+.-+.+-|+-.... .|...-+.+.+|.| |.||. +|
T Consensus 79 ~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~P-----Flv~kL~IkVLP~v~l~k~g~~~D~i 153 (211)
T KOG1672|consen 79 EEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAP-----FLVTKLNIKVLPTVALFKNGKTVDYV 153 (211)
T ss_pred HHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCc-----eeeeeeeeeEeeeEEEEEcCEEEEEE
Confidence 3333455555 5888874445 5566677777777666666533222 12222356788987 68886 45
Q ss_pred echHHHHh--HHHcCcHHHHHHhcccc
Q 037937 76 GSAKDVIS--LHVDGSLKQMLIDARAI 100 (102)
Q Consensus 76 gg~~~~~~--~~~~g~L~~~l~~~g~~ 100 (102)
-||.++=. -+....|+..|...|++
T Consensus 154 VGF~dLGnkDdF~te~LE~rL~~S~vi 180 (211)
T KOG1672|consen 154 VGFTDLGNKDDFTTETLENRLAKSGVI 180 (211)
T ss_pred eeHhhcCCCCcCcHHHHHHHHhhccce
Confidence 66665421 12233566666665543
No 302
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=80.94 E-value=2.5 Score=25.60 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=29.9
Q ss_pred CCchHHHHHHHHHHcCC---CcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCE
Q 037937 20 SCCMCHSIKTLFYELGA---SPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGR 73 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~v---~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~ 73 (102)
.||+|..+.-+|..... ...+.-|+-..-..++.+.+.+ ...+.|+++.++.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE--~~QslPvLVL~~~ 77 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGE--ANQSLPVLVLADG 77 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhCh--hccCCCEEEeCCC
Confidence 59999999999986532 2333334332222333333322 2478999987653
No 303
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.47 E-value=2.4 Score=28.45 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=16.6
Q ss_pred CCCCCccEEEECCEEEechHHH
Q 037937 60 GCNPSVPAVFIGGRYVGSAKDV 81 (102)
Q Consensus 60 ~g~~tvP~ifi~g~~igg~~~~ 81 (102)
.|....|++|++|..++|.-++
T Consensus 211 ~gv~gTPt~~v~~~~~~g~~~~ 232 (244)
T COG1651 211 LGVNGTPTFIVNGKLVPGLPDL 232 (244)
T ss_pred cCCCcCCeEEECCeeecCCCCH
Confidence 5667888888888877776653
No 304
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=80.12 E-value=1.4 Score=28.20 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=16.7
Q ss_pred cEEEEEcCCCchHHHHHHHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFY 32 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~ 32 (102)
+|.+|+.+.||+|-.+...|+
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 578999999999986655554
No 305
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=79.95 E-value=6.5 Score=24.63 Aligned_cols=64 Identities=20% Similarity=0.378 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHcCcHHHHHHh
Q 037937 23 MCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQMLID 96 (102)
Q Consensus 23 ~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~g~L~~~l~~ 96 (102)
|-.++++.|.++|+.+..+++...+. .++.+.+.. .-.||+.| |.-..+.+..++-.|.+.|++
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~-~~~~~~i~~------ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRND-ADILEAIRE------ADAIFLGG---GDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGH-HHHHHHHHH------SSEEEE-----S-HHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCCh-HHHHHHHHh------CCEEEECC---CCHHHHHHHHHhCCHHHHHHH
Confidence 34678999999998866666655422 244444433 33467665 222344444455566666655
No 306
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=79.56 E-value=5.1 Score=29.79 Aligned_cols=65 Identities=25% Similarity=0.310 Sum_probs=40.8
Q ss_pred hhhcCCcEEEEEc-----CCCchHHHHHHHHHHcCCCcEEEEecc-CCCcHHHHHHHHhhCCCCCccEEEECCEEE
Q 037937 6 DLASKKAAVIFTK-----SSCCMCHSIKTLFYELGASPAIHELDQ-DANGREIEWALRALGCNPSVPAVFIGGRYV 75 (102)
Q Consensus 6 ~~~~~~~v~iy~~-----~~Cp~C~~~~~~l~~~~v~~~~~~vd~-~~~~~~~~~~l~~~~g~~tvP~ifi~g~~i 75 (102)
.+.+.+.+++=.+ ++|-||+-+++.|...|.+.+.+++-. -++.. ++|...+|...+ +||+.+.|
T Consensus 212 AlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~itclpd~a---~~ltSh~g~khi--tFiGSqpv 282 (583)
T KOG2454|consen 212 ALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVITCLPDTA---EALTSHSGVKHI--TFIGSQPV 282 (583)
T ss_pred HHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhheeecCcchH---hHhhcCCCcceE--EEecCcHH
Confidence 3444555665443 689999999999999999987776543 23332 345544444333 46665543
No 307
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=78.96 E-value=2.9 Score=26.63 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=32.0
Q ss_pred HHHHHHHcCCCcEEEEecc-CCCc-HHHHHHH--HhhCCCCCccEEEECCE-EEechHHHHhH
Q 037937 27 IKTLFYELGASPAIHELDQ-DANG-REIEWAL--RALGCNPSVPAVFIGGR-YVGSAKDVISL 84 (102)
Q Consensus 27 ~~~~l~~~~v~~~~~~vd~-~~~~-~~~~~~l--~~~~g~~tvP~ifi~g~-~igg~~~~~~~ 84 (102)
+..++.+.|++...++-.. ++.. ..+++.. ....|...+|+++|||+ .+-|.+.+..+
T Consensus 126 l~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 126 LAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHH
Confidence 5667777788654322211 1111 1122221 22467789999999999 77887765443
No 308
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=78.20 E-value=4.3 Score=25.88 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=25.2
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHcCCC
Q 037937 9 SKKAAVIFTKSSCCMCHSIKTLFYELGAS 37 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~ 37 (102)
...+|++|..++|+.+..+...|...|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 45689999999999999999999999975
No 309
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=77.73 E-value=11 Score=27.22 Aligned_cols=83 Identities=10% Similarity=-0.047 Sum_probs=54.8
Q ss_pred hHHhhhcCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEE----------eccCCCcHHHHHHHHhhCCCCCccEEEECC
Q 037937 3 RVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHE----------LDQDANGREIEWALRALGCNPSVPAVFIGG 72 (102)
Q Consensus 3 ~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~----------vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g 72 (102)
++.++++..-+.||+-+.|+.-..+.++.+...+|+-... +...|........+-...+++.+=.|+-++
T Consensus 55 ~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI~~~~Wr~~~~iYd~d 134 (372)
T cd06387 55 AFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLLAHYKWEKFVYLYDTE 134 (372)
T ss_pred HHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHHHHHHhcCCCEEEEEecCc
Confidence 4667788888899999999999999999999999975432 222333222222233457888887777555
Q ss_pred EEEechHHHHhHH
Q 037937 73 RYVGSAKDVISLH 85 (102)
Q Consensus 73 ~~igg~~~~~~~~ 85 (102)
.-.+...++.+..
T Consensus 135 ~gl~~Lq~L~~~~ 147 (372)
T cd06387 135 RGFSILQAIMEAA 147 (372)
T ss_pred hhHHHHHHHHHhh
Confidence 5455555554443
No 310
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=77.73 E-value=5.4 Score=26.22 Aligned_cols=31 Identities=0% Similarity=-0.139 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHH----HHcCCCcEEEE
Q 037937 12 AAVIFTKSSCCMCHSIKTLF----YELGASPAIHE 42 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l----~~~~v~~~~~~ 42 (102)
+|.+|+..-||||--+++-| +..+++.++.-
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P 36 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVP 36 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 57799999999998665555 44566554433
No 311
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=76.12 E-value=4.5 Score=26.02 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=14.7
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 037937 13 AVIFTKSSCCMCHSIKTLF 31 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l 31 (102)
|.+|+..-||||--+..-|
T Consensus 1 I~~~~D~~cP~cyl~~~~l 19 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRL 19 (201)
T ss_pred CeEEecCcCccHHHHHHHH
Confidence 4689999999999555444
No 312
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=76.07 E-value=6.7 Score=24.68 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=13.0
Q ss_pred cCCcEEEEEcC--CCchHHHH
Q 037937 9 SKKAAVIFTKS--SCCMCHSI 27 (102)
Q Consensus 9 ~~~~v~iy~~~--~Cp~C~~~ 27 (102)
...++++|..| +||.|..-
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchh
Confidence 34466666665 79999864
No 313
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=75.27 E-value=15 Score=29.01 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=30.3
Q ss_pred EEcCCCchHHHH----------HHHHHHcCCCcEEEEecc--CCCcHH-HHHHHHhhCCCCCccEE
Q 037937 16 FTKSSCCMCHSI----------KTLFYELGASPAIHELDQ--DANGRE-IEWALRALGCNPSVPAV 68 (102)
Q Consensus 16 y~~~~Cp~C~~~----------~~~l~~~~v~~~~~~vd~--~~~~~~-~~~~l~~~~g~~tvP~i 68 (102)
.+.++|.+|+-+ -.+|++ .|.-+.||. .|+-.. .....+.++|+...|.-
T Consensus 50 IGys~CHWChVM~~ESf~d~eiA~~lN~---~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLt 112 (667)
T COG1331 50 IGYSTCHWCHVMAHESFEDPEIAAILNE---NFVPVKVDREERPDVDSLYMNASQAITGQGGWPLT 112 (667)
T ss_pred eccccccchHHHhhhcCCCHHHHHHHHh---CceeeeEChhhccCHHHHHHHHHHHhccCCCCcee
Confidence 556899999843 333333 344455554 455555 34455667888888854
No 314
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=75.13 E-value=5.9 Score=23.08 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=21.3
Q ss_pred hhhcCCcEEEEEcCCCchHHHHHHHHHHcC
Q 037937 6 DLASKKAAVIFTKSSCCMCHSIKTLFYELG 35 (102)
Q Consensus 6 ~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~ 35 (102)
++-.+-.+.+|+.+. ++|..+++++++..
T Consensus 16 ~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a 44 (94)
T cd02974 16 RLENPVELVASLDDS-EKSAELLELLEEIA 44 (94)
T ss_pred hCCCCEEEEEEeCCC-cchHHHHHHHHHHH
Confidence 344444566787767 99999999998754
No 315
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=74.70 E-value=12 Score=23.51 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=26.2
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHcCCC--cEEEEe
Q 037937 9 SKKAAVIFTKSSCCMCHSIKTLFYELGAS--PAIHEL 43 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~--~~~~~v 43 (102)
++...+|++-..||.|.....+|.+..-. +....+
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~ 42 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAAL 42 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEec
Confidence 45567788889999999999999887554 444444
No 316
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=74.08 E-value=22 Score=25.57 Aligned_cols=82 Identities=11% Similarity=-0.027 Sum_probs=54.6
Q ss_pred hHHhhhcCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEe----------ccCCCcH-HHHHHHHhhCCCCCccEEEEC
Q 037937 3 RVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHEL----------DQDANGR-EIEWALRALGCNPSVPAVFIG 71 (102)
Q Consensus 3 ~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~v----------d~~~~~~-~~~~~l~~~~g~~tvP~ifi~ 71 (102)
++.++++..-+.||+-.++..+..+..+.++.++|+-.... ...|... .+.+ +....+++++=.++..
T Consensus 55 ~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~-~i~~~~wk~vaiiYd~ 133 (371)
T cd06388 55 AFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLS-LLDHYEWNRFVFLYDT 133 (371)
T ss_pred HHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHH-HHHhcCceEEEEEecC
Confidence 46677888888899999999999999999999998743221 1122211 1222 3344678888777865
Q ss_pred CEEEechHHHHhHH
Q 037937 72 GRYVGSAKDVISLH 85 (102)
Q Consensus 72 g~~igg~~~~~~~~ 85 (102)
+.-.+..+.+.+..
T Consensus 134 ~~~~~~lq~l~~~~ 147 (371)
T cd06388 134 DRGYSILQAIMEKA 147 (371)
T ss_pred CccHHHHHHHHHhh
Confidence 66556666655543
No 317
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=74.06 E-value=11 Score=24.28 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=17.3
Q ss_pred CCCCCccEEEECCEE-EechHHHH
Q 037937 60 GCNPSVPAVFIGGRY-VGSAKDVI 82 (102)
Q Consensus 60 ~g~~tvP~ifi~g~~-igg~~~~~ 82 (102)
.|...+|+++|||++ +.|.....
T Consensus 171 ~gv~G~Pt~vv~g~~~~~G~~~~~ 194 (201)
T cd03024 171 LGISGVPFFVFNGKYAVSGAQPPE 194 (201)
T ss_pred CCCCcCCEEEECCeEeecCCCCHH
Confidence 577899999999884 56665443
No 318
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=73.52 E-value=3.5 Score=26.27 Aligned_cols=29 Identities=10% Similarity=-0.048 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHH----HcCCCcEEE
Q 037937 13 AVIFTKSSCCMCHSIKTLFY----ELGASPAIH 41 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~----~~~v~~~~~ 41 (102)
|.+|+...||||--+...|+ +++++++..
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~ 33 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYR 33 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEe
Confidence 45899999999987666654 456555543
No 319
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=73.18 E-value=12 Score=27.22 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=23.6
Q ss_pred HHHHHHHcCCCcEEEEeccCCCc-----HHHHHHHHhhCCCCCccEEEECCEEEec
Q 037937 27 IKTLFYELGASPAIHELDQDANG-----REIEWALRALGCNPSVPAVFIGGRYVGS 77 (102)
Q Consensus 27 ~~~~l~~~~v~~~~~~vd~~~~~-----~~~~~~l~~~~g~~tvP~ifi~g~~igg 77 (102)
.+.+.++++++=-+.-....-+. ..+++.+++ ..+|.+.+++.+..+
T Consensus 305 i~~lv~~~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e----~GIP~L~iE~D~~~~ 356 (377)
T TIGR03190 305 VLGLAKEYNVQGAIFLQQKFCDPHEGDYPDLKRHLEA----NGIPTLFLEFDITNP 356 (377)
T ss_pred HHHHHHHhCCCEEEEecccCCCcchhhhHHHHHHHHH----CCCCEEEEecCCCCc
Confidence 34444677776433333332111 123444433 248888888877644
No 320
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.51 E-value=5.4 Score=22.44 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=19.2
Q ss_pred CCchHHHHHHHHHHcCCCcEEEE
Q 037937 20 SCCMCHSIKTLFYELGASPAIHE 42 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~v~~~~~~ 42 (102)
-=.||+++.++|++++++|+.+.
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeec
Confidence 34699999999999999987543
No 321
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=72.28 E-value=22 Score=22.55 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=32.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCcc-EEEEC--CEE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVP-AVFIG--GRY 74 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP-~ifi~--g~~ 74 (102)
+.+++-+....=...++++++.+.+|..+..|.... +....+...+| +++|| |+.
T Consensus 93 ~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~-------~~~~~~v~~~P~~~~id~~G~i 150 (173)
T TIGR00385 93 LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGK-------LGLDLGVYGAPETFLVDGNGVI 150 (173)
T ss_pred CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCc-------hHHhcCCeeCCeEEEEcCCceE
Confidence 444444433334556789999999887665554322 22234667799 56675 653
No 322
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.23 E-value=5.3 Score=26.73 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=10.1
Q ss_pred cEEEEEcCCCchHHHHHHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLF 31 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l 31 (102)
.+++|....||||++...-+
T Consensus 87 ~v~~f~d~~Cp~C~~~~~~l 106 (244)
T COG1651 87 TVVEFFDYTCPYCKEAFPEL 106 (244)
T ss_pred eEEEEecCcCccHHHHHHHH
Confidence 45555555555554443333
No 323
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=71.96 E-value=18 Score=23.92 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHc-CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHcCcHHHHHHh
Q 037937 22 CMCHSIKTLFYEL-GASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQMLID 96 (102)
Q Consensus 22 p~C~~~~~~l~~~-~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~g~L~~~l~~ 96 (102)
.+...+.+.|+++ |.+...+++..+++ ..+.+.. .=.||+.| |....+++..++-.|.+.|++
T Consensus 46 ~~~~~~~~a~~~l~G~~~~~~~~~~~~~---~~~~l~~------ad~I~l~G---G~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 46 EYTARFYAAFESLRGVEVSHLHLFDTED---PLDALLE------ADVIYVGG---GNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred HHHHHHHHHHhhccCcEEEEEeccCccc---HHHHHhc------CCEEEECC---chHHHHHHHHHHcCHHHHHHH
Confidence 5677888999999 88776665543222 2233432 22478888 666666666666677777765
No 324
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.16 E-value=17 Score=24.76 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=48.6
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHc--CcHHHHH
Q 037937 19 SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVD--GSLKQML 94 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~--g~L~~~l 94 (102)
|.-..|-.++.+|+-.+.||.++--+..+ +.+.+| .+|.+-+|...+.++..+....+. ..|..+|
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~Nae--------fmSP~G--~vPllr~g~~~~aef~pIV~fVeak~~~l~s~l 99 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRANAE--------FMSPGG--KVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWL 99 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecCCcc--------ccCCCC--CCceeeecchhhhhhhHHHHHHHHhccchhhhh
Confidence 56788999999999999999877554322 223344 799999999999999988777643 3444444
No 325
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=70.55 E-value=9.4 Score=24.32 Aligned_cols=41 Identities=7% Similarity=0.048 Sum_probs=28.7
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhh
Q 037937 19 SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRAL 59 (102)
Q Consensus 19 ~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~ 59 (102)
++=|+++++...|+++|++|+..-+.-.....++.+.++..
T Consensus 11 SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~ 51 (150)
T PF00731_consen 11 SDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEY 51 (150)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHh
Confidence 46789999999999999999877776666655555555443
No 326
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=70.33 E-value=7 Score=22.95 Aligned_cols=61 Identities=10% Similarity=-0.026 Sum_probs=39.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCC--Cc----HHHHHHHHhhCCCCCccEEEECCE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDA--NG----REIEWALRALGCNPSVPAVFIGGR 73 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~--~~----~~~~~~l~~~~g~~tvP~ifi~g~ 73 (102)
|.+++.|+|.-..-++.+.+..+.++..++..... .. ..+...+...........+|+|+-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEI 67 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETG
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 57899999999999999999999877666655422 11 224444444221112456788874
No 327
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=69.97 E-value=17 Score=22.42 Aligned_cols=36 Identities=8% Similarity=-0.093 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCchHH------------HHHHHHHHcCCCcEEEEecc
Q 037937 10 KKAAVIFTKSSCCMCH------------SIKTLFYELGASPAIHELDQ 45 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~------------~~~~~l~~~~v~~~~~~vd~ 45 (102)
.+.|++.|......+. ...++|++.+++|..+.+..
T Consensus 40 G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 40 GFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred CCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 3455555555555555 77899999999998777654
No 328
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.52 E-value=2.9 Score=29.36 Aligned_cols=10 Identities=30% Similarity=0.776 Sum_probs=8.0
Q ss_pred cCCCchHHHH
Q 037937 18 KSSCCMCHSI 27 (102)
Q Consensus 18 ~~~Cp~C~~~ 27 (102)
+++||||++-
T Consensus 270 kqtCPYCKek 279 (328)
T KOG1734|consen 270 KQTCPYCKEK 279 (328)
T ss_pred CCCCchHHHH
Confidence 4789999864
No 329
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=66.15 E-value=47 Score=23.89 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=31.3
Q ss_pred hHHhhhcCCcEEEEEcCCCchHHHHHHHHHHcCCCcEE
Q 037937 3 RVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAI 40 (102)
Q Consensus 3 ~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~ 40 (102)
.++++++..-+.|++..+++.+..+..++++.++|+-.
T Consensus 54 ~~c~Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is 91 (363)
T cd06381 54 EACDLMNQGILALVTSTGCASAIALQSLTDAMHIPHLF 91 (363)
T ss_pred HHHHHHhcCcEEEEecCChhHHHHHHHHhhCCCCCEEE
Confidence 46677877666789988999999999999999988643
No 330
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=66.06 E-value=23 Score=20.33 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=25.3
Q ss_pred HHhhhcCCcEEEEEcCCCchH--HHHHHHHHHcCCCcEEE
Q 037937 4 VRDLASKKAAVIFTKSSCCMC--HSIKTLFYELGASPAIH 41 (102)
Q Consensus 4 v~~~~~~~~v~iy~~~~Cp~C--~~~~~~l~~~~v~~~~~ 41 (102)
+.+.+....++|+....+.+. ..+++..++.++|+...
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 556666667777766666553 56777777777776554
No 331
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=65.96 E-value=30 Score=24.77 Aligned_cols=83 Identities=11% Similarity=0.004 Sum_probs=53.0
Q ss_pred hhHHhhhcCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEe----------ccCCCcH-HHHHHHHhhCCCCCccEEEE
Q 037937 2 DRVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHEL----------DQDANGR-EIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 2 ~~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~v----------d~~~~~~-~~~~~l~~~~g~~tvP~ifi 70 (102)
+++.++++..-+.||+-..+..+..+..+.+++++|+-.... ...|... .+.+ +-...+++++=.++-
T Consensus 48 ~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d-~i~~~~wk~vailYd 126 (370)
T cd06389 48 NAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLS-LIEYYQWDKFAYLYD 126 (370)
T ss_pred HHHHHHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHHH-HHHhcCCcEEEEEec
Confidence 356677888888899999999999999999999998754321 1122222 2222 233468888877775
Q ss_pred CCEEEechHHHHhHH
Q 037937 71 GGRYVGSAKDVISLH 85 (102)
Q Consensus 71 ~g~~igg~~~~~~~~ 85 (102)
++.-.+..+++.+..
T Consensus 127 sd~gl~~lq~l~~~~ 141 (370)
T cd06389 127 SDRGLSTLQAVLDSA 141 (370)
T ss_pred CchHHHHHHHHHHhh
Confidence 543344445554443
No 332
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=65.74 E-value=21 Score=22.34 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=34.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC---Cc---EEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCEEE
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGA---SP---AIHELDQDANGREIEWALRALGCNPSVPAV--FIGGRYV 75 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v---~~---~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~i 75 (102)
|+=|+..|-|.|.+.-.+|.+... .| -.+|+|+.++. -++.+-...|++ |.|++|+
T Consensus 27 ViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~-------~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 27 VIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDF-------VKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred EEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhh-------hhhhcccCCceEEEEEcCceE
Confidence 445999999999999999876532 23 34555543332 333444555554 6777764
No 333
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=65.39 E-value=39 Score=24.41 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=33.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHH
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALR 57 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~ 57 (102)
.++.|.+.+....-.++...|++.++++..+++..++....+.+.+.
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~ 69 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVA 69 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHH
Confidence 56777776655566778888999999988887666665554555443
No 334
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=63.22 E-value=17 Score=26.40 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=42.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCC--CcHHHHHHHHhhCCCCCccEE--EECC-EEEechHHHHhH
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDA--NGREIEWALRALGCNPSVPAV--FIGG-RYVGSAKDVISL 84 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~--~~~~~~~~l~~~~g~~tvP~i--fi~g-~~igg~~~~~~~ 84 (102)
..+.++|.+..+.||. .+...-+|+....+.+|.+. +..++++.+.+......+|.+ ..-| ...|.+|++.++
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i 216 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEI 216 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHH
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHH
Confidence 3567899999888886 45555567777777777643 224566666554333457733 2344 456777877654
No 335
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=62.87 E-value=5.5 Score=26.65 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=42.1
Q ss_pred cEEEEEc-----CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEE--EechHHHHhH
Q 037937 12 AAVIFTK-----SSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRY--VGSAKDVISL 84 (102)
Q Consensus 12 ~v~iy~~-----~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~--igg~~~~~~~ 84 (102)
+-.+|.+ =.|++|....++=.+.+.++....+ .++.+.++....... =.++-+|++ ..+..++.++
T Consensus 22 r~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~------~~I~~~i~~~~~~~~-~V~lTGGEP~~~~~l~~Ll~~ 94 (212)
T COG0602 22 RPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSA------DEILADIKSLGYKAR-GVSLTGGEPLLQPNLLELLEL 94 (212)
T ss_pred ceeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCH------HHHHHHHHhcCCCcc-eEEEeCCcCCCcccHHHHHHH
Confidence 3456666 2699998766643333333333222 334444544322111 235778887 3366666666
Q ss_pred HHcCcHHHHHHhcccc
Q 037937 85 HVDGSLKQMLIDARAI 100 (102)
Q Consensus 85 ~~~g~L~~~l~~~g~~ 100 (102)
.+.-.++..|+..|.+
T Consensus 95 l~~~g~~~~lETngti 110 (212)
T COG0602 95 LKRLGFRIALETNGTI 110 (212)
T ss_pred HHhCCceEEecCCCCc
Confidence 5544444444444544
No 336
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=62.86 E-value=8.8 Score=22.66 Aligned_cols=60 Identities=8% Similarity=0.020 Sum_probs=34.4
Q ss_pred CchHHHHHHHHHHcC---------CCcEEEEecc--CCCcHHHHHHHHhhCCCCCccEEEECCEEEechHH
Q 037937 21 CCMCHSIKTLFYELG---------ASPAIHELDQ--DANGREIEWALRALGCNPSVPAVFIGGRYVGSAKD 80 (102)
Q Consensus 21 Cp~C~~~~~~l~~~~---------v~~~~~~vd~--~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~ 80 (102)
=|.-...+.++...| -.|+....+. .-...++.+.+.+...--.-|.|..+++.+-|+++
T Consensus 35 p~s~~eL~~~l~~~g~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~LikRPIi~~~~~~~iGf~~ 105 (105)
T cd03035 35 GLDAATLERWLAKVGWETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIKRPVLETGGKVLVGFSE 105 (105)
T ss_pred CCCHHHHHHHHHHhChHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeeecceEEeCCEEEEeeCC
Confidence 344456666666555 4455555442 11224455556555444566988888888878763
No 337
>PRK00766 hypothetical protein; Provisional
Probab=62.78 E-value=16 Score=24.31 Aligned_cols=44 Identities=9% Similarity=0.031 Sum_probs=28.4
Q ss_pred CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechH
Q 037937 36 ASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 36 v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~ 79 (102)
+-+..+.+|-.+..+.+.+.+...-....+=.|+++|--+|||+
T Consensus 43 v~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFN 86 (194)
T PRK00766 43 VLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFN 86 (194)
T ss_pred EEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeE
Confidence 34567777777666655554443222246667889999888886
No 338
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=62.64 E-value=25 Score=19.52 Aligned_cols=56 Identities=13% Similarity=-0.054 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
..++.+.+-+....=...++.+++.+.+...+..+.+. ...+.+..+...+|++++
T Consensus 33 ~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~i~~iP~~~l 88 (95)
T PF13905_consen 33 KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-----NSELLKKYGINGIPTLVL 88 (95)
T ss_dssp TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-----HHHHHHHTT-TSSSEEEE
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-----HHHHHHHCCCCcCCEEEE
Confidence 34555555555577788899999998877766655332 234556677888999875
No 339
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=62.43 E-value=24 Score=24.10 Aligned_cols=45 Identities=9% Similarity=0.199 Sum_probs=31.8
Q ss_pred HHhhhcCCcEEEEEcC-----CCchHHHHHHHHHHc------CCCcEEEEeccCCC
Q 037937 4 VRDLASKKAAVIFTKS-----SCCMCHSIKTLFYEL------GASPAIHELDQDAN 48 (102)
Q Consensus 4 v~~~~~~~~v~iy~~~-----~Cp~C~~~~~~l~~~------~v~~~~~~vd~~~~ 48 (102)
++++-.+-.|++|..+ .-++=..++.+|+++ ++.++++|-+.+++
T Consensus 20 L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~ 75 (271)
T PF09822_consen 20 LKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPS 75 (271)
T ss_pred HHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChH
Confidence 4555556678888887 567778889999887 56677777654443
No 340
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=62.21 E-value=17 Score=23.55 Aligned_cols=65 Identities=9% Similarity=0.016 Sum_probs=33.4
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHcCCC------------cEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEE
Q 037937 9 SKKAAVIFTKSSCCMCHSIKTLFYELGAS------------PAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRY 74 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~------------~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~ 74 (102)
+...+.+-..|.++.=.-|+++|+.++++ +...+|-.......+++ +.+.+|.+.==.+|.|++.
T Consensus 58 ~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~-i~~~tgI~y~eMlFFDDe~ 134 (169)
T PF12689_consen 58 KERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRR-IHRKTGIPYEEMLFFDDES 134 (169)
T ss_dssp HHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHH-HHHHH---GGGEEEEES-H
T ss_pred HHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHH-HHHhcCCChhHEEEecCch
Confidence 33555555555554448999999998887 33455554433344543 4455665544578998874
No 341
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=61.95 E-value=19 Score=21.20 Aligned_cols=54 Identities=9% Similarity=-0.083 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHcCCCcEEEEecc---------------CCCcHHHHHHHHhhCCCCCccEEEECCEEEe
Q 037937 23 MCHSIKTLFYELGASPAIHELDQ---------------DANGREIEWALRALGCNPSVPAVFIGGRYVG 76 (102)
Q Consensus 23 ~C~~~~~~l~~~~v~~~~~~vd~---------------~~~~~~~~~~l~~~~g~~tvP~ifi~g~~ig 76 (102)
-..++++++++.|++++..-... .|.-+...+.+++......+|...|+.+..|
T Consensus 16 la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 16 LANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred HHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHh
Confidence 34588888999998875432221 1222334455666666677999999987666
No 342
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=61.05 E-value=44 Score=21.91 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=43.9
Q ss_pred CCcEEEEEcC---CCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHH
Q 037937 10 KKAAVIFTKS---SCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 10 ~~~v~iy~~~---~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~ 86 (102)
..+|.+.... .+.++....+.|+++|.+...+.+.......++.+.+.. .-.||+.| |....+.+..+
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~------ad~I~~~G---G~~~~~~~~l~ 99 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLE------ADGIFVGG---GNQLRLLSVLR 99 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhh------CCEEEEcC---CcHHHHHHHHH
Confidence 3455555443 367899999999999998766655433344444444433 33477777 44444444433
Q ss_pred c-CcHHHHHH
Q 037937 87 D-GSLKQMLI 95 (102)
Q Consensus 87 ~-g~L~~~l~ 95 (102)
. +-++.+++
T Consensus 100 ~t~~~~~i~~ 109 (210)
T cd03129 100 ETPLLDAILK 109 (210)
T ss_pred hCChHHHHHH
Confidence 3 34444443
No 343
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=60.50 E-value=31 Score=19.96 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=40.7
Q ss_pred CcEEEEEcCC---CchHHHHHHHHHHcCCCcEEEEecc---------------CCCcHHHHHHHHhhCCCCCccEEEECC
Q 037937 11 KAAVIFTKSS---CCMCHSIKTLFYELGASPAIHELDQ---------------DANGREIEWALRALGCNPSVPAVFIGG 72 (102)
Q Consensus 11 ~~v~iy~~~~---Cp~C~~~~~~l~~~~v~~~~~~vd~---------------~~~~~~~~~~l~~~~g~~tvP~ifi~g 72 (102)
.+|.+....+ --...++++++++.|++++..-.+. .|......+.+++......+|...|+.
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeCh
Confidence 3566665543 2345688888999999875432221 122233344455555555689999988
Q ss_pred EEEechH
Q 037937 73 RYVGSAK 79 (102)
Q Consensus 73 ~~igg~~ 79 (102)
+..|-.+
T Consensus 84 ~~Y~~md 90 (95)
T TIGR00853 84 AQYGKLT 90 (95)
T ss_pred hhcccCC
Confidence 7766543
No 344
>PF02288 Dehydratase_MU: Dehydratase medium subunit; InterPro: IPR003208 This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.; PDB: 2D0P_B 2D0O_D 1IWP_E 1MMF_B 1NBW_B 3AUJ_B 1UC5_B 1IWB_B 1EEX_E 1DIO_B ....
Probab=60.41 E-value=25 Score=21.29 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCchHHHHHHHH---HHcCCCcEEEEeccCCCcHH
Q 037937 11 KAAVIFTKSSCCMCHSIKTLF---YELGASPAIHELDQDANGRE 51 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l---~~~~v~~~~~~vd~~~~~~~ 51 (102)
..|.+|..+.|..-...+.++ ++-|++|..+.+....+...
T Consensus 3 Pai~i~~~~~~~~~~~lrev~aGIEEEGip~~~~~~~~~~d~~~ 46 (112)
T PF02288_consen 3 PAIGIYVSKTIEGSDVLREVLAGIEEEGIPYRVVRVSDTSDVAF 46 (112)
T ss_dssp TTECCCEECTTTCHHHHHHHHHHHHCTT-EEEEEEECSSSSHHH
T ss_pred CEEEEEecCCCcchhHHHHHHhHhcccCCCeEEEeecCcccHHH
Confidence 457788888888755556664 78899999977666666544
No 345
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=60.33 E-value=31 Score=20.71 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=33.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGRE 51 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~ 51 (102)
+|.+++.++|.-..-++.+.+..+.++..+.+..+-+..+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~d 40 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEED 40 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccccccc
Confidence 4789999999999999999999988888888877655543
No 346
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=59.46 E-value=27 Score=20.96 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=35.7
Q ss_pred cEEEEEcCCCc----hHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 12 AAVIFTKSSCC----MCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~iy~~~~Cp----~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
++.++.-..-| |=+..++..++.|+.++.+.+..+....++.+.+...+.-.++=.|.+
T Consensus 31 ~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlv 93 (117)
T PF00763_consen 31 KLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILV 93 (117)
T ss_dssp EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEE
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEE
Confidence 34444444334 444566778899999999999887777777777777655455544444
No 347
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=58.98 E-value=33 Score=19.78 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHcCCCcEEEEecc---------------CCCcHHHHHHHHhhCCCCCccEEEECCEEEechH
Q 037937 22 CMCHSIKTLFYELGASPAIHELDQ---------------DANGREIEWALRALGCNPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 22 p~C~~~~~~l~~~~v~~~~~~vd~---------------~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~ 79 (102)
....++++++++.|++++..-.+. .|+.....+.+++......+|...|+....|-.+
T Consensus 14 ~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~d 86 (96)
T cd05564 14 ILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMDYGMMN 86 (96)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHhcccCC
Confidence 456788888999988765433221 1222223344544445578999999998776543
No 348
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=58.78 E-value=38 Score=20.43 Aligned_cols=62 Identities=15% Similarity=0.310 Sum_probs=34.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHcCCCcEE-EEeccCCCcHHHHHHHHhh-CCCCCccEEEECCE
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYELGASPAI-HELDQDANGREIEWALRAL-GCNPSVPAVFIGGR 73 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~-~~vd~~~~~~~~~~~l~~~-~g~~tvP~ifi~g~ 73 (102)
+.+|++.-+-.|++..+++. ..+.|...-. ++.+..+....+ ...... ....++|.++|..+
T Consensus 34 ~g~I~Lv~RG~C~F~~K~~~-Aq~aGA~avII~n~~~~~~~~~~-~m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 34 NGNIALIERGGCSFLTKAIN-AQKAGALAVIITDVNNDSDEYYV-EMIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEECCCCccccce-EecCCCCCCCceEEEEEecHH
Confidence 34688888889999999877 5566765433 333222111100 000010 12247899998764
No 349
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=58.74 E-value=13 Score=27.95 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=21.7
Q ss_pred HhhhcCCcEEEEEcCCCchHHHHHHHHHHcC
Q 037937 5 RDLASKKAAVIFTKSSCCMCHSIKTLFYELG 35 (102)
Q Consensus 5 ~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~ 35 (102)
.++-.+-.+.+|+. .|++|..++++|++..
T Consensus 15 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 44 (517)
T PRK15317 15 ELLERPIELVASLD-DSEKSAELKELLEEIA 44 (517)
T ss_pred HhCCCCEEEEEEeC-CCchHHHHHHHHHHHH
Confidence 34444445666765 7999999999998764
No 350
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=58.62 E-value=10 Score=24.40 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=18.1
Q ss_pred EEEcCCCchHHHHHHHHHHc----C--CCcEEEEeccC
Q 037937 15 IFTKSSCCMCHSIKTLFYEL----G--ASPAIHELDQD 46 (102)
Q Consensus 15 iy~~~~Cp~C~~~~~~l~~~----~--v~~~~~~vd~~ 46 (102)
+|+.|-|++|-.....+.+. + +.++.+.....
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~~~ 39 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGGLM 39 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--SS
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEccch
Confidence 68999999999777666543 3 34455544433
No 351
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=58.22 E-value=65 Score=22.91 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCC---------CCCccEEEECC---------------EEEechH
Q 037937 24 CHSIKTLFYELGASPAIHELDQDANGREIEWALRALGC---------NPSVPAVFIGG---------------RYVGSAK 79 (102)
Q Consensus 24 C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g---------~~tvP~ifi~g---------------~~igg~~ 79 (102)
|.+++.+=+.++.+...+-.++.....+.++.|++... +.++|.+..+| .+-|-.+
T Consensus 39 ~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~ 118 (300)
T cd00897 39 VQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGD 118 (300)
T ss_pred HHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCCccCeEEEecCCcccCccccCccccccCCCcceeeccCCCch
Confidence 34444444455555554444444444444455555432 24456555432 1234456
Q ss_pred HHHhHHHcCcHHHHHHhcccc
Q 037937 80 DVISLHVDGSLKQMLIDARAI 100 (102)
Q Consensus 80 ~~~~~~~~g~L~~~l~~~g~~ 100 (102)
-...+..+|.|+++++ .|.-
T Consensus 119 i~~aL~~sG~L~~l~~-~G~~ 138 (300)
T cd00897 119 IFESLYNSGLLDTLLA-QGKE 138 (300)
T ss_pred HHHHHHHCCcHHHHHh-cCCE
Confidence 6778889999998754 3443
No 352
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=57.03 E-value=27 Score=20.80 Aligned_cols=30 Identities=20% Similarity=-0.003 Sum_probs=20.3
Q ss_pred HHHHHHHHhhCCCCCccEEEECCEEEechH
Q 037937 50 REIEWALRALGCNPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 50 ~~~~~~l~~~~g~~tvP~ifi~g~~igg~~ 79 (102)
.++.+.+.+...--.-|.|..+++.+-|++
T Consensus 77 ~e~i~~l~~~P~LikRPIi~~~~~~~vG~~ 106 (114)
T TIGR00014 77 QELLDAMVAHPILLERPIVVAGDGARIGRP 106 (114)
T ss_pred HHHHHHHHHCcCcccCCeEEECCEEEEcCC
Confidence 344455555554456798998888877876
No 353
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=56.52 E-value=9.7 Score=23.14 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=16.6
Q ss_pred CCCCCccEEEECCEEE-echHHH
Q 037937 60 GCNPSVPAVFIGGRYV-GSAKDV 81 (102)
Q Consensus 60 ~g~~tvP~ifi~g~~i-gg~~~~ 81 (102)
.|.+++|.|++|+++| =|-.|+
T Consensus 80 lGi~k~PAVV~D~~~VVYG~~DV 102 (113)
T TIGR03757 80 LGVTKIPAVVVDRRYVVYGETDV 102 (113)
T ss_pred cCCccCCEEEEcCCeEEecCccH
Confidence 5779999999999985 344433
No 354
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=56.38 E-value=57 Score=21.70 Aligned_cols=78 Identities=22% Similarity=0.263 Sum_probs=42.5
Q ss_pred CCcEEEEEcCC---CchHHHHHHHHHHcCCC-cEEEEeccC--CCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHh
Q 037937 10 KKAAVIFTKSS---CCMCHSIKTLFYELGAS-PAIHELDQD--ANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVIS 83 (102)
Q Consensus 10 ~~~v~iy~~~~---Cp~C~~~~~~l~~~~v~-~~~~~vd~~--~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~ 83 (102)
..+|.+..... +.+|.+....|.++|.. ...+.++.. ....++.+.+.. ...||+.|- .-..+.+
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~------ad~I~~~GG---~~~~~~~ 99 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRD------ADGIFFTGG---DQLRITS 99 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHh------CCEEEEeCC---cHHHHHH
Confidence 34565555443 88899999999999985 556666532 223333444432 334666652 2233334
Q ss_pred HHHcCcHHHHHHh
Q 037937 84 LHVDGSLKQMLID 96 (102)
Q Consensus 84 ~~~~g~L~~~l~~ 96 (102)
....-.+.+.|++
T Consensus 100 ~l~~t~l~~~l~~ 112 (217)
T cd03145 100 ALGGTPLLDALRK 112 (217)
T ss_pred HHcCChHHHHHHH
Confidence 3334344454443
No 355
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.73 E-value=75 Score=22.85 Aligned_cols=65 Identities=8% Similarity=0.038 Sum_probs=42.5
Q ss_pred cEEEEEcC-----CCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECC-EEEechHHHHhHH
Q 037937 12 AAVIFTKS-----SCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGG-RYVGSAKDVISLH 85 (102)
Q Consensus 12 ~v~iy~~~-----~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g-~~igg~~~~~~~~ 85 (102)
.+.+|+.+ -|+.|..+.-+++=.+.+..+. +..++.. ++...+|.+..+. ..|+|++++....
T Consensus 3 ~L~~~~~~~glptid~~sL~~l~y~kl~~~~l~v~-~ssN~~~----------s~sg~LP~l~~~ng~~va~~~~iv~~L 71 (313)
T KOG3028|consen 3 ELHIWSGGYGLPTIDPDSLAALIYLKLAGAPLKVV-VSSNPWR----------SPSGKLPYLITDNGTKVAGPVKIVQFL 71 (313)
T ss_pred eEEEecCCCCCCCcChhHHHHHHHHHHhCCCceeE-eecCCCC----------CCCCCCCeEEecCCceeccHHHHHHHH
Confidence 35566654 3999999998888777443332 2222221 3345699987655 9999999877665
Q ss_pred Hc
Q 037937 86 VD 87 (102)
Q Consensus 86 ~~ 87 (102)
+.
T Consensus 72 ~k 73 (313)
T KOG3028|consen 72 KK 73 (313)
T ss_pred HH
Confidence 43
No 356
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=55.71 E-value=28 Score=24.09 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=48.6
Q ss_pred hcCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEE------eccCC-CcHHHHHHHHhhCCCCCcc-----EEEECCEEE
Q 037937 8 ASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHE------LDQDA-NGREIEWALRALGCNPSVP-----AVFIGGRYV 75 (102)
Q Consensus 8 ~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~------vd~~~-~~~~~~~~l~~~~g~~tvP-----~ifi~g~~i 75 (102)
+..+++.+|+.=.=..-..+...|++.||+|+... |-.++ +..+.+..|... |-+.-. .+|-.+.++
T Consensus 16 l~gC~~~LysgL~~~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~~~~~~Ar~~La~~-GLP~~g~~~~~~lFd~~~l~ 94 (249)
T PRK15348 16 LTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLN-GYPHRQFTTADKMFPANQLV 94 (249)
T ss_pred HhcCChHHHcCCCHHHHHHHHHHHHHcCCCceEeeCCCCeEEEecHHHHHHHHHHHHHc-CCCCCCCccHHHhCCccccc
Confidence 44556667776666667788999999999997531 11111 112234445543 322111 144433443
Q ss_pred echHHHHh---HHHcCcHHHHHHhc
Q 037937 76 GSAKDVIS---LHVDGSLKQMLIDA 97 (102)
Q Consensus 76 gg~~~~~~---~~~~g~L~~~l~~~ 97 (102)
-|..+..+ +..+|+|.+.|+..
T Consensus 95 ~t~te~~qki~y~regELarTI~~i 119 (249)
T PRK15348 95 VSPQEEQQKINFLKEQRIEGMLSQM 119 (249)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHhC
Confidence 33333332 44689999988653
No 357
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=55.68 E-value=75 Score=22.85 Aligned_cols=82 Identities=10% Similarity=-0.055 Sum_probs=52.9
Q ss_pred hHHhhhcCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEE----------EeccCCCcH-HHHHHHHhhCCCCCccEEEEC
Q 037937 3 RVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIH----------ELDQDANGR-EIEWALRALGCNPSVPAVFIG 71 (102)
Q Consensus 3 ~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~----------~vd~~~~~~-~~~~~l~~~~g~~tvP~ifi~ 71 (102)
++.++++..-+.||+-+.|..-..+..+.++..+|+-.. .+...|+.. .+.+ +-...+++.+=.|+.+
T Consensus 48 ~~C~~~~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~~~~~~~~~~~i~~~P~~~~Ai~d-iI~~~~W~~v~iIYd~ 126 (364)
T cd06390 48 TFCSQFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQDALIS-VIEHYKWQKFVYIYDA 126 (364)
T ss_pred HHHHHhhcCceEEEccCChhHHHHHHHhhcCCCCCceecCCCCCCCCceEEEeChhHHHHHHH-HHHHcCCcEEEEEEeC
Confidence 456677778888999888888888888889998886432 122223222 2322 3345788888888876
Q ss_pred CEEEechHHHHhHH
Q 037937 72 GRYVGSAKDVISLH 85 (102)
Q Consensus 72 g~~igg~~~~~~~~ 85 (102)
+.-.++...+.+..
T Consensus 127 d~g~~~lq~l~~~~ 140 (364)
T cd06390 127 DRGLSVLQKVLDTA 140 (364)
T ss_pred CccHHHHHHHHHhh
Confidence 65555555554443
No 358
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=55.36 E-value=37 Score=20.99 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCCcEEEEeccCCCcHH
Q 037937 25 HSIKTLFYELGASPAIHELDQDANGRE 51 (102)
Q Consensus 25 ~~~~~~l~~~~v~~~~~~vd~~~~~~~ 51 (102)
.++.++|++.+++|+.++........+
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~ 28 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEE 28 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHHH
Confidence 467889999999999988776554443
No 359
>PRK08118 topology modulation protein; Reviewed
Probab=55.08 E-value=52 Score=20.86 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=40.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCCCcEEEE-ec-----cCCCcHHHHHHHHhhCCCCCccEEEECCEEEech
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGASPAIHE-LD-----QDANGREIEWALRALGCNPSVPAVFIGGRYVGSA 78 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~-vd-----~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~ 78 (102)
.+|.|.+.++|.-..-++.+-+..++++...| +- ......+..+.+...... +..+++|.+-+..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~---~~wVidG~~~~~~ 72 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKE---DEWIIDGNYGGTM 72 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcC---CCEEEeCCcchHH
Confidence 57999999999999999999999998865444 21 011112233333332221 4578888765444
No 360
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=54.32 E-value=12 Score=25.32 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=15.2
Q ss_pred CCcEEEEEcCCCchHHHH
Q 037937 10 KKAAVIFTKSSCCMCHSI 27 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~ 27 (102)
.-.|++|+.+-||+|.+.
T Consensus 40 ~v~ItlyyEaLCPdc~~F 57 (220)
T KOG3160|consen 40 KVNITLYYEALCPDCSKF 57 (220)
T ss_pred eeEEEEEEEecCccHHHH
Confidence 346899999999999854
No 361
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=54.25 E-value=24 Score=19.35 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=14.7
Q ss_pred CCCccEEEECCEEEechH
Q 037937 62 NPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 62 ~~tvP~ifi~g~~igg~~ 79 (102)
-..=|.+.|||++++...
T Consensus 44 C~~gP~v~V~~~~~~~~t 61 (72)
T cd03082 44 CERAPAALVGQRPVDGAT 61 (72)
T ss_pred cCCCCeEEECCEEeCCcC
Confidence 467899999999987763
No 362
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=53.82 E-value=48 Score=25.69 Aligned_cols=71 Identities=7% Similarity=0.072 Sum_probs=45.9
Q ss_pred EcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhh----------------------CCCCCccEEE--ECC
Q 037937 17 TKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRAL----------------------GCNPSVPAVF--IGG 72 (102)
Q Consensus 17 ~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~----------------------~g~~tvP~if--i~g 72 (102)
+.+.=|.++++...|+++|++|+..-..-+.....+.+..+.. .+..+.|.|= ++.
T Consensus 419 s~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~ 498 (577)
T PLN02948 419 SDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKT 498 (577)
T ss_pred chhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCC
Confidence 4457899999999999999999876666555544433322211 2235667663 333
Q ss_pred EEEechHHHHhHHHc
Q 037937 73 RYVGSAKDVISLHVD 87 (102)
Q Consensus 73 ~~igg~~~~~~~~~~ 87 (102)
...+|.|.+..+.+.
T Consensus 499 ~~~~g~~~l~s~~~~ 513 (577)
T PLN02948 499 SHLDGLDSLLSIVQM 513 (577)
T ss_pred CCCCcHHHHHHHhcC
Confidence 356788877776655
No 363
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=53.62 E-value=51 Score=20.54 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 25 HSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 25 ~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
.++.++|++.+++|+.++.+......+..+.+. ......+-.+++
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~~-~~~~~~~Ktlv~ 46 (156)
T cd04335 2 DELLALLDELGIAYETVEHPPVFTVEEADEVLG-ELPGAHTKNLFL 46 (156)
T ss_pred hHHHHHHHHCCCceEEEecCCcCCHHHHHHhhc-cCCCceEEEEEE
Confidence 367889999999999988775555544433332 233345556664
No 364
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=53.05 E-value=53 Score=24.52 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=29.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEecc
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQ 45 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~ 45 (102)
-+.+|+-|+|.-.--++.+..+.|+++-.++...
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~~i~vsa~e 183 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGE 183 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHH
Confidence 3668999999999999999999999987776554
No 365
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=52.71 E-value=9.1 Score=20.41 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=10.0
Q ss_pred CCCchHHHHHHHH
Q 037937 19 SSCCMCHSIKTLF 31 (102)
Q Consensus 19 ~~Cp~C~~~~~~l 31 (102)
|-||.|+++..-|
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 5799999876544
No 366
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=52.40 E-value=84 Score=22.68 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=32.4
Q ss_pred CcEEEEEcCC---CchHHHHHHHHHHcCCCcEEEE-eccCCCcHHHHHHHHh
Q 037937 11 KAAVIFTKSS---CCMCHSIKTLFYELGASPAIHE-LDQDANGREIEWALRA 58 (102)
Q Consensus 11 ~~v~iy~~~~---Cp~C~~~~~~l~~~~v~~~~~~-vd~~~~~~~~~~~l~~ 58 (102)
.++.+.+.+. -+...+++..|++.++++..++ +..++....+.+....
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~ 78 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEA 78 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHH
Confidence 4666666554 4567899999999999887654 5566666655555444
No 367
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=52.36 E-value=43 Score=20.07 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=25.0
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEec
Q 037937 9 SKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELD 44 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd 44 (102)
...+|++|.......+.++..+|+..|.+ ...++
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~ 118 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLE 118 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeC
Confidence 44578899976677777888888888974 44554
No 368
>PF15616 TerY-C: TerY-C metal binding domain
Probab=52.26 E-value=4.6 Score=25.19 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=10.5
Q ss_pred EEEcCCCchHHHHHH
Q 037937 15 IFTKSSCCMCHSIKT 29 (102)
Q Consensus 15 iy~~~~Cp~C~~~~~ 29 (102)
+...|+||+|-....
T Consensus 74 L~g~PgCP~CGn~~~ 88 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYA 88 (131)
T ss_pred hcCCCCCCCCcChhc
Confidence 455689999976543
No 369
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=52.25 E-value=74 Score=22.67 Aligned_cols=73 Identities=11% Similarity=0.189 Sum_probs=43.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHh-hCC-CCCccEEEECCEEEechHHHHhHHHcC
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRA-LGC-NPSVPAVFIGGRYVGSAKDVISLHVDG 88 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~-~~g-~~tvP~ifi~g~~igg~~~~~~~~~~g 88 (102)
+|++|...+-..+..+..+|...|.+ ...++.. ...++..... ..+ ....|.+.++|....|.+++.+...++
T Consensus 76 ~vvvyC~~gG~RS~~aa~~L~~~G~~--v~~L~GG--~~aw~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~ 150 (311)
T TIGR03167 76 QPLLYCWRGGMRSGSLAWLLAQIGFR--VPRLEGG--YKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANA 150 (311)
T ss_pred cEEEEECCCChHHHHHHHHHHHcCCC--EEEecCh--HHHHHHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcC
Confidence 49999866667888999999999984 3444422 1222222211 111 123344557787777778877765544
No 370
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=51.90 E-value=48 Score=19.73 Aligned_cols=40 Identities=10% Similarity=0.153 Sum_probs=22.5
Q ss_pred HHhhhcCCcEEEEEcCCCchHH----HHHHHHHHcCCCcEEEEec
Q 037937 4 VRDLASKKAAVIFTKSSCCMCH----SIKTLFYELGASPAIHELD 44 (102)
Q Consensus 4 v~~~~~~~~v~iy~~~~Cp~C~----~~~~~l~~~~v~~~~~~vd 44 (102)
++++....+|++++ ..++++. .+..+|+....+...++++
T Consensus 80 l~~l~~~~~I~iW~-~~~~~dq~gl~~~l~~L~~~~~~I~~v~~t 123 (124)
T PF08874_consen 80 LEELPEDDPIVIWY-GDNAYDQLGLRYLLSLLKDKPNRIYVVNVT 123 (124)
T ss_pred HHhCCCCCEEEEEe-CCCHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 44555555565554 4566665 4555566666555666554
No 371
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=51.52 E-value=12 Score=22.22 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=14.1
Q ss_pred CCCCccEEEECCEEEechH
Q 037937 61 CNPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 61 g~~tvP~ifi~g~~igg~~ 79 (102)
+....=++||||.++|.+.
T Consensus 60 g~~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 60 GNAFRASVWVNGWFLGSYW 78 (111)
T ss_dssp STTEEEEEEETTEEEEEEE
T ss_pred CCceEEEEEECCEEeeeec
Confidence 3444557999999999764
No 372
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=51.26 E-value=21 Score=26.94 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=20.8
Q ss_pred hhhcCCcEEEEEcCCCchHHHHHHHHHHcC
Q 037937 6 DLASKKAAVIFTKSSCCMCHSIKTLFYELG 35 (102)
Q Consensus 6 ~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~ 35 (102)
++-.+-.+.+|+. .|++|.+++++|++..
T Consensus 16 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 44 (515)
T TIGR03140 16 SLENPVTLVLSAG-SHEKSKELLELLDEIA 44 (515)
T ss_pred hcCCCEEEEEEeC-CCchhHHHHHHHHHHH
Confidence 3433444556665 7999999999998764
No 373
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=50.91 E-value=56 Score=20.72 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=24.4
Q ss_pred hhHHhhhcCCcEEEEEcC--CCchHHHHHHHHHHcC
Q 037937 2 DRVRDLASKKAAVIFTKS--SCCMCHSIKTLFYELG 35 (102)
Q Consensus 2 ~~v~~~~~~~~v~iy~~~--~Cp~C~~~~~~l~~~~ 35 (102)
+.+.+.+.....+|+.+| +=...-..|.+|+...
T Consensus 57 ~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~ 92 (171)
T TIGR03567 57 KAATAQVAQADGVVVATPVYKASYSGVLKALLDLLP 92 (171)
T ss_pred HHHHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCC
Confidence 356677777888899988 4555567788887653
No 374
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=50.88 E-value=11 Score=26.11 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=15.0
Q ss_pred EEEEEcCCCchHHHH----HHHHHHcCC
Q 037937 13 AVIFTKSSCCMCHSI----KTLFYELGA 36 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~----~~~l~~~~v 36 (102)
|...+..+||+|... -..|.+.|-
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred EEEEecccCccchhhHHHHHHHHHhcCC
Confidence 444456789999844 334566663
No 375
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=50.69 E-value=12 Score=24.78 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=29.1
Q ss_pred CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechH--HHHhHH
Q 037937 36 ASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAK--DVISLH 85 (102)
Q Consensus 36 v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~--~~~~~~ 85 (102)
+-+..+.+|-.+..+.+.+.... ...+.+=.|+++|--+|||+ |+.+++
T Consensus 37 v~~~~itvdG~DaT~~i~~m~~~-~~r~~i~~v~LdGit~agFNiiD~~~l~ 87 (187)
T PF01949_consen 37 VAFGRITVDGMDATEAIIEMVKR-LFRPDIRVVMLDGITFAGFNIIDIERLY 87 (187)
T ss_dssp EEEEEE-TT-S-HHHHHHHHHCC-TTTTTEEEEEESSSEETTTEE--HHHHH
T ss_pred EEEEEEEECCchHHHHHHHHHHh-cccCcceEEEECCEeEEeeEEecHHHHH
Confidence 44566777766666555554443 33456677899999999997 444444
No 376
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=50.59 E-value=31 Score=23.38 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=19.6
Q ss_pred EEEcCCCchHHHHHHHHHHcCCC
Q 037937 15 IFTKSSCCMCHSIKTLFYELGAS 37 (102)
Q Consensus 15 iy~~~~Cp~C~~~~~~l~~~~v~ 37 (102)
++-+..||.++.+++.|++.++.
T Consensus 150 i~~t~~~pla~~~R~~Lrk~~~~ 172 (231)
T cd00755 150 ISKTSGDPLARKVRKRLRKRGIF 172 (231)
T ss_pred EeccccCcHHHHHHHHHHHcCCC
Confidence 45567899999999999999886
No 377
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=50.35 E-value=80 Score=23.14 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE-CCEEEechHHHHhHH
Q 037937 24 CHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI-GGRYVGSAKDVISLH 85 (102)
Q Consensus 24 C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi-~g~~igg~~~~~~~~ 85 (102)
-..++++|+++++.--.+-+..+-...++.+++.. ....+|.+++ |.-..-|.+++..+.
T Consensus 201 ~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~--nrvY~p~l~v~NKiD~~~~e~~~~l~ 261 (365)
T COG1163 201 EDTVRAILREYRIHNADVLIREDVTLDDLIDALEG--NRVYKPALYVVNKIDLPGLEELERLA 261 (365)
T ss_pred HHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhh--cceeeeeEEEEecccccCHHHHHHHH
Confidence 36889999999998877777777666666666543 2457898874 444444466655554
No 378
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=50.29 E-value=14 Score=22.46 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=17.7
Q ss_pred CCCCCccEEEECCEEE-echHHHHh
Q 037937 60 GCNPSVPAVFIGGRYV-GSAKDVIS 83 (102)
Q Consensus 60 ~g~~tvP~ifi~g~~i-gg~~~~~~ 83 (102)
.|...+|.|++|+++| =|-.|+.+
T Consensus 79 lgi~k~PAVVfD~~~VVYG~tDV~~ 103 (114)
T PF07511_consen 79 LGITKYPAVVFDDRYVVYGETDVAR 103 (114)
T ss_pred hCccccCEEEEcCCeEEecccHHHH
Confidence 5779999999999875 45554443
No 379
>PLN02790 transketolase
Probab=49.74 E-value=70 Score=25.20 Aligned_cols=88 Identities=5% Similarity=-0.129 Sum_probs=50.9
Q ss_pred cEEEEEc-CCCchHHHHHHHHHHcCCCcEEEEeccCCCcHH-HHHHHHhhCCCCCccEEEECCEEEechHHH--------
Q 037937 12 AAVIFTK-SSCCMCHSIKTLFYELGASPAIHELDQDANGRE-IEWALRALGCNPSVPAVFIGGRYVGSAKDV-------- 81 (102)
Q Consensus 12 ~v~iy~~-~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~-~~~~l~~~~g~~tvP~ifi~g~~igg~~~~-------- 81 (102)
.+++.+. +-...|.+|.+.|++.|+...++++-.-.-..+ ........-+...-+.|.+.....+|+...
T Consensus 542 dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~~~~~~~~i 621 (654)
T PLN02790 542 DLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKYVGSKGKVI 621 (654)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHHHhcCCCceEE
Confidence 4555443 457788899999999999999998775432222 111121222223334555555555665442
Q ss_pred --HhHHHcCcHHHHHHhccc
Q 037937 82 --ISLHVDGSLKQMLIDARA 99 (102)
Q Consensus 82 --~~~~~~g~L~~~l~~~g~ 99 (102)
..+-.+|..+.+++..|+
T Consensus 622 gvd~Fg~sg~~~~l~~~~Gl 641 (654)
T PLN02790 622 GVDRFGASAPAGILYKEFGF 641 (654)
T ss_pred EeCCCcCcCCHHHHHHHhCC
Confidence 134456777777766654
No 380
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=49.61 E-value=17 Score=20.06 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=14.2
Q ss_pred CCCchHH-HHHHHHHHcCC
Q 037937 19 SSCCMCH-SIKTLFYELGA 36 (102)
Q Consensus 19 ~~Cp~C~-~~~~~l~~~~v 36 (102)
=-||.|+ .|++.+++.++
T Consensus 16 LPC~~Cr~HA~~ai~kNNi 34 (70)
T PF04805_consen 16 LPCPECRIHAKEAIQKNNI 34 (70)
T ss_pred CCCHHHHHHHHHHHHhcCc
Confidence 4599997 67888888776
No 381
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=49.30 E-value=21 Score=21.37 Aligned_cols=14 Identities=36% Similarity=0.859 Sum_probs=7.3
Q ss_pred cEEEEEcC---CCchHH
Q 037937 12 AAVIFTKS---SCCMCH 25 (102)
Q Consensus 12 ~v~iy~~~---~Cp~C~ 25 (102)
.+++|+.. .|+||.
T Consensus 7 ~~~~~t~~Cnl~C~yC~ 23 (139)
T PF13353_consen 7 RVVLFTNGCNLRCKYCF 23 (139)
T ss_dssp EEEEEEC--SB--TT-T
T ss_pred EEEEEcCcccccCcCcC
Confidence 57788664 599994
No 382
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=49.28 E-value=97 Score=22.27 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=32.5
Q ss_pred CcEEEEEcC---CCchHHHHHHHHHHcCCCcEEEE-eccCCCcHHHHHHHHh
Q 037937 11 KAAVIFTKS---SCCMCHSIKTLFYELGASPAIHE-LDQDANGREIEWALRA 58 (102)
Q Consensus 11 ~~v~iy~~~---~Cp~C~~~~~~l~~~~v~~~~~~-vd~~~~~~~~~~~l~~ 58 (102)
.++.+.+.+ ..+...++.+.|++.|+++..++ +..++....+.+.+..
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~ 76 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAA 76 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHH
Confidence 456665543 35678899999999999887664 5566666655555443
No 383
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=48.68 E-value=16 Score=18.43 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=12.5
Q ss_pred CCccEEEECCEEEech
Q 037937 63 PSVPAVFIGGRYVGSA 78 (102)
Q Consensus 63 ~tvP~ifi~g~~igg~ 78 (102)
..++.|||||+.+-.-
T Consensus 18 ~GI~~V~VNG~~vv~~ 33 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVED 33 (48)
T ss_dssp BSEEEEEETTEEEECT
T ss_pred CCEEEEEECCEEEEEC
Confidence 4689999999987443
No 384
>PRK04195 replication factor C large subunit; Provisional
Probab=48.48 E-value=1.1e+02 Score=22.87 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEec
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELD 44 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd 44 (102)
...+.+|+.|+|.-...+..+.++.+.++.+++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence 45688999999999999999999998766655544
No 385
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=48.45 E-value=96 Score=22.10 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=31.0
Q ss_pred CcEEEEEcCCC--chHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHH
Q 037937 11 KAAVIFTKSSC--CMCHSIKTLFYELGASPAIHELDQDANGREIEWALR 57 (102)
Q Consensus 11 ~~v~iy~~~~C--p~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~ 57 (102)
.++++.+.+.. +...++...|++.++.+.+.++..++....+.+..+
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~ 71 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAE 71 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHH
Confidence 45655554322 677788888999999876556776666655554443
No 386
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=48.05 E-value=87 Score=21.36 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=42.2
Q ss_pred hHHhhhcCCcEEEEEc-C-----CCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEe
Q 037937 3 RVRDLASKKAAVIFTK-S-----SCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVG 76 (102)
Q Consensus 3 ~v~~~~~~~~v~iy~~-~-----~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~ig 76 (102)
.+.+++...+-++|.- . +=.|..++++.|+++|++...++.. ++ ..+.+... =.||+.| |
T Consensus 23 ~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~--~d---~~~~l~~a------d~I~v~G---G 88 (233)
T PRK05282 23 LIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV--AD---PVAAIENA------EAIFVGG---G 88 (233)
T ss_pred HHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc--hh---hHHHHhcC------CEEEECC---c
Confidence 3455554444444442 2 2347889999999999875555443 21 12333221 2466666 2
Q ss_pred chHHHHhHHHcCcHHHHHHh
Q 037937 77 SAKDVISLHVDGSLKQMLID 96 (102)
Q Consensus 77 g~~~~~~~~~~g~L~~~l~~ 96 (102)
..-.+.+....-.|.+.|++
T Consensus 89 nt~~l~~~l~~~gl~~~l~~ 108 (233)
T PRK05282 89 NTFQLLKQLYERGLLAPIRE 108 (233)
T ss_pred cHHHHHHHHHHCCcHHHHHH
Confidence 23344444445556666653
No 387
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=47.99 E-value=98 Score=22.44 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=32.1
Q ss_pred CcEEEEEcCC----CchHHHHHHHHHHcCCCcEEEE-eccCCCcHHHHHHHH
Q 037937 11 KAAVIFTKSS----CCMCHSIKTLFYELGASPAIHE-LDQDANGREIEWALR 57 (102)
Q Consensus 11 ~~v~iy~~~~----Cp~C~~~~~~l~~~~v~~~~~~-vd~~~~~~~~~~~l~ 57 (102)
.++.+.+.+. ++...++...|++.++++..++ +..++....+.+...
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~ 78 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAK 78 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHH
Confidence 4566666543 6778899999999999887764 655666555444443
No 388
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=47.94 E-value=49 Score=19.56 Aligned_cols=58 Identities=21% Similarity=0.125 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHcC-----------CCcEEEEeccCC-CcHHHHHHHHhhCCCCCccEEEECCEEEechH
Q 037937 22 CMCHSIKTLFYELG-----------ASPAIHELDQDA-NGREIEWALRALGCNPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 22 p~C~~~~~~l~~~~-----------v~~~~~~vd~~~-~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~ 79 (102)
|.-.....+++..| -.|+....+... ...++.+.+.+...--.-|.|+-+++.+-|+.
T Consensus 36 ~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~vG~~ 105 (112)
T cd03034 36 PTAAELRELLAKLGISPRDLLRTKEAPYKELGLADPELSDEELIDAMAAHPILIERPIVVTGDGAVLGRP 105 (112)
T ss_pred cCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCccCCCHHHHHHHHHhCcCcccCCEEEECCEEEEcCC
Confidence 34445555655555 345544444322 22334555655555556799998888877763
No 389
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=47.62 E-value=26 Score=21.51 Aligned_cols=56 Identities=9% Similarity=-0.002 Sum_probs=32.0
Q ss_pred HHHHHHHHHc-----------CCCcEEEEeccCC-CcHHHHHHHHhhCCCCCccEEEECCEEEechHH
Q 037937 25 HSIKTLFYEL-----------GASPAIHELDQDA-NGREIEWALRALGCNPSVPAVFIGGRYVGSAKD 80 (102)
Q Consensus 25 ~~~~~~l~~~-----------~v~~~~~~vd~~~-~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~ 80 (102)
..++.+++.. +-.|+....+... ...++.+.+.+...--.-|.|+.+++.+-|+++
T Consensus 40 ~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~~~~ls~~e~i~ll~~~p~LikRPIi~~~~~~~vG~~~ 107 (131)
T PRK01655 40 DEIKQILRMTEDGTDEIISTRSKVFQKLNVDVESLSLQDLIKLISDNPGLLRRPIIIDEKRLQVGYNE 107 (131)
T ss_pred HHHHHHHHHhcCCHHHHHhcCcHHHHhCCCCcccCCHHHHHHHHHhCcceEeCCEEEECCEEEecCCH
Confidence 4555556554 3334544444321 223444555554444566999999998888864
No 390
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=47.33 E-value=17 Score=21.66 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=13.8
Q ss_pred CCccEEEECCEEEechH
Q 037937 63 PSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 63 ~tvP~ifi~g~~igg~~ 79 (102)
.-.|.+|.||+.||=-+
T Consensus 80 ECTplvF~n~~LvgWG~ 96 (102)
T PF11399_consen 80 ECTPLVFKNGKLVGWGD 96 (102)
T ss_pred ceEEEEEECCEEEEEcH
Confidence 46899999999987444
No 391
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=47.28 E-value=1.1e+02 Score=22.18 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=33.0
Q ss_pred CcEEEEEcC----CCchHHHHHHHHHHcCCCcEEE-EeccCCCcHHHHHHH
Q 037937 11 KAAVIFTKS----SCCMCHSIKTLFYELGASPAIH-ELDQDANGREIEWAL 56 (102)
Q Consensus 11 ~~v~iy~~~----~Cp~C~~~~~~l~~~~v~~~~~-~vd~~~~~~~~~~~l 56 (102)
.++.|.+.+ ..+...+++..|++.++++.++ ++..++....+.+..
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~ 76 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGA 76 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHH
Confidence 467666654 4678889999999999998766 466677666555443
No 392
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=47.26 E-value=47 Score=22.01 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=31.7
Q ss_pred CCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechH--HHHhHH
Q 037937 35 GASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAK--DVISLH 85 (102)
Q Consensus 35 ~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~--~~~~~~ 85 (102)
++.+..+.+|-.+....+....... ++.-+-.|+.+|--+|||+ |+.+++
T Consensus 41 gv~~~~i~vDG~D~T~~i~~~v~~~-~~~~~rvVlLdGIt~aGFNivDi~~l~ 92 (185)
T COG1628 41 GVAFSLITVDGLDVTDAISDMVNRS-KRRDLRVVLLDGITFAGFNIVDIEALY 92 (185)
T ss_pred eeEEEEEEecCchHHHHHHHHHHHh-hcccccEEEECCeeeccceEecHHHHH
Confidence 3456778888766665554444333 3333777899998888886 444444
No 393
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=47.20 E-value=63 Score=21.66 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHcCCCcEEEEeccCCCc--HHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHcC
Q 037937 23 MCHSIKTLFYELGASPAIHELDQDANG--REIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDG 88 (102)
Q Consensus 23 ~C~~~~~~l~~~~v~~~~~~vd~~~~~--~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~g 88 (102)
....+...+.++++.+-+.|++.+-.. ..+ +.+++......+|.+.-+| ++..+++.++.+.|
T Consensus 142 ~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~-eli~~i~~~~~~pvia~GG--i~s~ed~~~l~~~G 206 (221)
T TIGR00734 142 SLEEVRDFLNSFDYGLIVLDIHSVGTMKGPNL-ELLTKTLELSEHPVMLGGG--ISGVEDLELLKEMG 206 (221)
T ss_pred cHHHHHHHHHhcCCEEEEEECCccccCCCCCH-HHHHHHHhhCCCCEEEeCC--CCCHHHHHHHHHCC
Confidence 455566777777775455566654221 111 2233333345689888777 57888887766544
No 394
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=47.15 E-value=28 Score=17.00 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=18.0
Q ss_pred EEECCEEEech--HHHHhHHHcCcHH
Q 037937 68 VFIGGRYVGSA--KDVISLHVDGSLK 91 (102)
Q Consensus 68 ifi~g~~igg~--~~~~~~~~~g~L~ 91 (102)
+..||+..|-+ +++.++..+|++.
T Consensus 4 ~~~~g~~~GP~s~~el~~l~~~g~i~ 29 (45)
T PF14237_consen 4 YARNGQQQGPFSLEELRQLISSGEID 29 (45)
T ss_pred EeCCCeEECCcCHHHHHHHHHcCCCC
Confidence 34588888876 5788888888874
No 395
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=47.06 E-value=1.1e+02 Score=23.11 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=29.8
Q ss_pred cCCcEEEEEcCCCchHH-------HHHHHHHHcCCCcEEEEeccCCCcHH
Q 037937 9 SKKAAVIFTKSSCCMCH-------SIKTLFYELGASPAIHELDQDANGRE 51 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~-------~~~~~l~~~~v~~~~~~vd~~~~~~~ 51 (102)
.+.++.++..|....-+ .++.+|++.++++..+......+..+
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~ 159 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKE 159 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHH
Confidence 46688899998766432 35568889999888776655544444
No 396
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=46.74 E-value=29 Score=20.56 Aligned_cols=31 Identities=10% Similarity=-0.019 Sum_probs=20.3
Q ss_pred HHHHHHHHhhCCCCCccEEEECCEEEechHH
Q 037937 50 REIEWALRALGCNPSVPAVFIGGRYVGSAKD 80 (102)
Q Consensus 50 ~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~ 80 (102)
.++.+.+.+...--.-|.|..+++.+-|+++
T Consensus 77 ~e~i~~l~~~p~LikRPii~~~~~~~vG~~~ 107 (115)
T cd03032 77 SELIRLISEHPSLLRRPIIIDEKRLQIGYNE 107 (115)
T ss_pred HHHHHHHHhChhheeCCEEEeCCEEEeCCCH
Confidence 3344555554444556999989888888864
No 397
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=46.57 E-value=42 Score=20.57 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHcC---------CCcEEEEeccCC-CcHHHHHHHHhhCCCCCccEEEECCEEEechHH
Q 037937 22 CMCHSIKTLFYELG---------ASPAIHELDQDA-NGREIEWALRALGCNPSVPAVFIGGRYVGSAKD 80 (102)
Q Consensus 22 p~C~~~~~~l~~~~---------v~~~~~~vd~~~-~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~ 80 (102)
|.-...+.+++..| -.|+..+.+... ...++.+.+.+...--.-|.|+.+|+.+-|+++
T Consensus 38 ~t~~eL~~~l~~~g~~~lin~~~~~~r~l~~~~~~ls~~e~i~lm~~~P~LIKRPIi~~~~~~~iGf~~ 106 (126)
T TIGR01616 38 WHADTLRPYFGNKPVGSWFNRAAPRVKSGEVNPDSIDEASALALMVSDPLLIRRPLMDLGGIRCAGFDR 106 (126)
T ss_pred cCHHHHHHHHHHcCHHHHHhccchHhhhCCCCcccCCHHHHHHHHHhCcCeEeCCEEEECCEEEEcCCH
Confidence 44455566665544 345444433322 123344555554444456999999998888874
No 398
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=46.47 E-value=19 Score=21.56 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=13.1
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 037937 14 VIFTKSSCCMCHSIKTLFY 32 (102)
Q Consensus 14 ~iy~~~~Cp~C~~~~~~l~ 32 (102)
.+--.+.||.|.+-+.-|.
T Consensus 27 k~H~~s~Cp~C~kkraeLa 45 (104)
T PF15379_consen 27 KQHNSSQCPSCNKKRAELA 45 (104)
T ss_pred cccCcccChHHHHHHHHHH
Confidence 3444578999998765554
No 399
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=46.46 E-value=26 Score=19.00 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=17.5
Q ss_pred CCCCCccEEEECCEEEechHHHHhH-HHcCcHHHHHHh
Q 037937 60 GCNPSVPAVFIGGRYVGSAKDVISL-HVDGSLKQMLID 96 (102)
Q Consensus 60 ~g~~tvP~ifi~g~~igg~~~~~~~-~~~g~L~~~l~~ 96 (102)
.|...+|.| |||.|=+..- -+.-+|+++|++
T Consensus 13 pGa~~lP~I------IGGSDLi~h~~~knseleeWl~~ 44 (65)
T PF08599_consen 13 PGAGGLPHI------IGGSDLIAHHAGKNSELEEWLRQ 44 (65)
T ss_pred CCCCCCCee------ecchhhhhccccccccHHHHHHH
Confidence 456677765 5555533222 144578888865
No 400
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=46.44 E-value=1.2e+02 Score=22.40 Aligned_cols=82 Identities=9% Similarity=0.083 Sum_probs=52.0
Q ss_pred hHHhhhcCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEE-E-----------e-----------ccCCC--cHHHHHHHH
Q 037937 3 RVRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIH-E-----------L-----------DQDAN--GREIEWALR 57 (102)
Q Consensus 3 ~v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~-~-----------v-----------d~~~~--~~~~~~~l~ 57 (102)
++.++++..-+.||+-..|..-..+..+.+++.||+-.. . . ...+. .......+-
T Consensus 54 ~ac~l~~~gV~AI~Gp~s~~~a~~v~sic~~l~VP~is~~~~~~~~~~~~~~~~p~~~~~~~~~~lrp~~~~~~Ai~dlV 133 (400)
T cd06392 54 EACDLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNSGGSPRTACHLNPSPEGEEYTLAARPPVRLNDVMLKLV 133 (400)
T ss_pred HHHHHHhcCeEEEECCCchhHHHHHHHHhccCcCCcEeecccccccccccccCCCCcCcCceeEEecCchHHHHHHHHHH
Confidence 455677677788888888888888899999999987554 1 1 11121 111122344
Q ss_pred hhCCCCCccEEEECCEEEechHHHHhH
Q 037937 58 ALGCNPSVPAVFIGGRYVGSAKDVISL 84 (102)
Q Consensus 58 ~~~g~~tvP~ifi~g~~igg~~~~~~~ 84 (102)
...+++.|=.||-++.-..+..++.+.
T Consensus 134 ~~~~W~~v~~iYD~d~gl~~lq~L~~~ 160 (400)
T cd06392 134 TELRWQKFIVFYDSEYDIRGLQSFLDQ 160 (400)
T ss_pred HhCCCcEEEEEEECcccHHHHHHHHHH
Confidence 557889998888555555555555443
No 401
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=46.11 E-value=87 Score=21.75 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=41.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHcCC-CcEEEEeccCC--CcHHHHHHHHhhCCCCCccEEEECCEE
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYELGA-SPAIHELDQDA--NGREIEWALRALGCNPSVPAVFIGGRY 74 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~~v-~~~~~~vd~~~--~~~~~~~~l~~~~g~~tvP~ifi~g~~ 74 (102)
.+.+.+|+..+|.-+.-+|.++.++.- ..+.++|+... +..++.+.++ ..+.-=.||+|+=-
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~---~~~~kFIlf~DDLs 116 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLR---DRPYKFILFCDDLS 116 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHh---cCCCCEEEEecCCC
Confidence 456999999999999999999987754 36788887643 3344444443 32222247888843
No 402
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=45.88 E-value=52 Score=18.15 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=19.0
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHHcCCC
Q 037937 9 SKKAAVIFTKSSCCMCHSIKTLFYELGAS 37 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~ 37 (102)
...++++|.. .+..+..+...|.+.|.+
T Consensus 55 ~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 55 RDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred CCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 4446777765 666777777777777764
No 403
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=45.84 E-value=59 Score=18.78 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=17.9
Q ss_pred CCcEEEEEcC-CCchHHHHHHHHHHcCCC
Q 037937 10 KKAAVIFTKS-SCCMCHSIKTLFYELGAS 37 (102)
Q Consensus 10 ~~~v~iy~~~-~Cp~C~~~~~~l~~~~v~ 37 (102)
..+|++|... .|.....+...|.+.|.+
T Consensus 64 ~~~vvvyc~~g~~~~s~~~a~~l~~~G~~ 92 (110)
T cd01521 64 EKLFVVYCDGPGCNGATKAALKLAELGFP 92 (110)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHcCCe
Confidence 4467777654 355566666677777764
No 404
>PLN02590 probable tyrosine decarboxylase
Probab=45.24 E-value=1.4e+02 Score=23.03 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=43.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCC---CcEEEEeccC----CCcHHHHHHHHhhCCCCCccEEEE---CCEEEechHH
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGA---SPAIHELDQD----ANGREIEWALRALGCNPSVPAVFI---GGRYVGSAKD 80 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v---~~~~~~vd~~----~~~~~~~~~l~~~~g~~tvP~ifi---~g~~igg~~~ 80 (102)
.++++|++..+-+|. .+.+.-+|+ ....+.+|.. -+...+++.+.+-......|.+++ +-...|.+|+
T Consensus 228 ~~~vvy~S~~aH~Sv--~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp 305 (539)
T PLN02590 228 PQLVVYGSDQTHSSF--RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP 305 (539)
T ss_pred CCEEEEecCCchHHH--HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC
Confidence 468999999888884 334444455 3566666632 233456666655322345676553 3456788888
Q ss_pred HHhHH
Q 037937 81 VISLH 85 (102)
Q Consensus 81 ~~~~~ 85 (102)
+.++.
T Consensus 306 l~~Ia 310 (539)
T PLN02590 306 LVPLG 310 (539)
T ss_pred HHHHH
Confidence 86654
No 405
>PRK02935 hypothetical protein; Provisional
Probab=45.03 E-value=4.6 Score=24.24 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=14.3
Q ss_pred CCchHHHHHHHHHHcCC
Q 037937 20 SCCMCHSIKTLFYELGA 36 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~v 36 (102)
.||.|++..+.|.+-..
T Consensus 72 ~CP~C~K~TKmLGrvD~ 88 (110)
T PRK02935 72 ICPSCEKPTKMLGRVDA 88 (110)
T ss_pred ECCCCCchhhhccceee
Confidence 79999999999977543
No 406
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=44.98 E-value=1.1e+02 Score=22.89 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCC---------CCCccEEEECCEE-----------------Eec
Q 037937 24 CHSIKTLFYELGASPAIHELDQDANGREIEWALRALGC---------NPSVPAVFIGGRY-----------------VGS 77 (102)
Q Consensus 24 C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g---------~~tvP~ifi~g~~-----------------igg 77 (102)
++++..+=+.++.+...+-.++.....+.++.++++.| +.++|.+..+|.. -|-
T Consensus 92 ~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~Gh 171 (420)
T PF01704_consen 92 VEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGH 171 (420)
T ss_dssp HHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TG
T ss_pred HHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCC
Confidence 45555555667777776666666666666777777544 2567777666621 133
Q ss_pred hHHHHhHHHcCcHHHHHHhcccc
Q 037937 78 AKDVISLHVDGSLKQMLIDARAI 100 (102)
Q Consensus 78 ~~~~~~~~~~g~L~~~l~~~g~~ 100 (102)
-+-...+..+|-|+++++. |.-
T Consensus 172 Gdi~~aL~~sG~Ld~l~~~-G~e 193 (420)
T PF01704_consen 172 GDIYRALYNSGLLDKLLAR-GIE 193 (420)
T ss_dssp GGHHHHHHHTTHHHHHHHT-T--
T ss_pred cceehhhhccChHHHHHHc-CCe
Confidence 4556777788988887644 543
No 407
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=44.67 E-value=55 Score=20.27 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCCcEEEEeccCCC
Q 037937 26 SIKTLFYELGASPAIHELDQDAN 48 (102)
Q Consensus 26 ~~~~~l~~~~v~~~~~~vd~~~~ 48 (102)
.+.++|++++++|+.++-+..+.
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~~~ 24 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVDPD 24 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCCCC
Confidence 47899999999999998876543
No 408
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=44.37 E-value=59 Score=23.69 Aligned_cols=6 Identities=17% Similarity=0.683 Sum_probs=3.8
Q ss_pred ccEEEE
Q 037937 65 VPAVFI 70 (102)
Q Consensus 65 vP~ifi 70 (102)
+|.+.+
T Consensus 352 IP~L~i 357 (380)
T TIGR02263 352 IPQIAF 357 (380)
T ss_pred CCEEEE
Confidence 666665
No 409
>PLN02204 diacylglycerol kinase
Probab=44.02 E-value=1.3e+02 Score=23.81 Aligned_cols=44 Identities=7% Similarity=0.192 Sum_probs=31.2
Q ss_pred cCCcEEEEEcCCCchH------HHHHHHHHHcCCCcEEEEeccCCCcHHH
Q 037937 9 SKKAAVIFTKSSCCMC------HSIKTLFYELGASPAIHELDQDANGREI 52 (102)
Q Consensus 9 ~~~~v~iy~~~~Cp~C------~~~~~~l~~~~v~~~~~~vd~~~~~~~~ 52 (102)
.+.++.+|..|.|.-- .++..+|...++++.++......+..++
T Consensus 158 r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~ 207 (601)
T PLN02204 158 RPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDV 207 (601)
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHH
Confidence 3457889999877643 2678889999999887766655555443
No 410
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=43.21 E-value=19 Score=21.00 Aligned_cols=34 Identities=9% Similarity=0.044 Sum_probs=23.1
Q ss_pred HHhhhcCCcEEEEEcCCCchHHHHHHHHHHcCCCc
Q 037937 4 VRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASP 38 (102)
Q Consensus 4 v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~ 38 (102)
+++.... ++..|..|+..+-..+.+++.+.|..|
T Consensus 89 l~~~~g~-~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 89 LEEITGR-PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp HHHHHSS-EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred HHHHhCC-CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 3343333 677788888888888888888888765
No 411
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=42.79 E-value=1e+02 Score=22.24 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=31.9
Q ss_pred CcEEEEEcCCC---chHHHHHHHHHHcCCCcEEEE-eccCCCcHHHHHHHH
Q 037937 11 KAAVIFTKSSC---CMCHSIKTLFYELGASPAIHE-LDQDANGREIEWALR 57 (102)
Q Consensus 11 ~~v~iy~~~~C---p~C~~~~~~l~~~~v~~~~~~-vd~~~~~~~~~~~l~ 57 (102)
.++.+.+.+.. +.-.++...|++.++++..++ +..++....+.+...
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~ 79 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLA 79 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHH
Confidence 45666665544 567789999999999887664 665666655554443
No 412
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=42.76 E-value=1.1e+02 Score=21.00 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=23.9
Q ss_pred cEEEEEcC---CCchHHHHHHHHHHcCCC-cEEEEecc
Q 037937 12 AAVIFTKS---SCCMCHSIKTLFYELGAS-PAIHELDQ 45 (102)
Q Consensus 12 ~v~iy~~~---~Cp~C~~~~~~l~~~~v~-~~~~~vd~ 45 (102)
+|.+..+. .=.++......|+++|+. ...++++.
T Consensus 30 rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~ 67 (250)
T TIGR02069 30 IIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRE 67 (250)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCC
Confidence 56665432 235688899999999995 67778754
No 413
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=42.71 E-value=72 Score=18.88 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=39.7
Q ss_pred cEEEEEcCCC---chHHHHHHHHHHcCCCcEEEEecc-----------------CCCcHHHHHHHHhhCCCCCccEEEEC
Q 037937 12 AAVIFTKSSC---CMCHSIKTLFYELGASPAIHELDQ-----------------DANGREIEWALRALGCNPSVPAVFIG 71 (102)
Q Consensus 12 ~v~iy~~~~C---p~C~~~~~~l~~~~v~~~~~~vd~-----------------~~~~~~~~~~l~~~~g~~tvP~ifi~ 71 (102)
+|.+....+= -...+.++++++.|++++..-... .|+-+...+.+++......+|...|+
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQIP 82 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEEeC
Confidence 4555544432 445678888999998865422211 11122234455555555789999999
Q ss_pred CEEEec
Q 037937 72 GRYVGS 77 (102)
Q Consensus 72 g~~igg 77 (102)
....|-
T Consensus 83 ~~~Y~~ 88 (104)
T PRK09590 83 PQAYIP 88 (104)
T ss_pred HHHcCC
Confidence 988773
No 414
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=42.61 E-value=1.1e+02 Score=21.02 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=39.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCE
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGR 73 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~ 73 (102)
.+++|+.|+|.-..-++.+.++.+.++.............+...+... ..-..+|||.-
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~vl~iDEi 90 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNL---EEGDVLFIDEI 90 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhc---ccCCEEEEehH
Confidence 488999999999999999999998876665543322333333444332 22356788874
No 415
>PRK01415 hypothetical protein; Validated
Probab=42.60 E-value=49 Score=22.84 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=24.3
Q ss_pred hhcCCcEEEEEcCCCchHHHHHHHHHHcCCC
Q 037937 7 LASKKAAVIFTKSSCCMCHSIKTLFYELGAS 37 (102)
Q Consensus 7 ~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~ 37 (102)
.-+..+|++|.+.+ .-|.++.++|.+.|.+
T Consensus 168 ~~k~k~Iv~yCtgG-iRs~kAa~~L~~~Gf~ 197 (247)
T PRK01415 168 LLKGKKIAMVCTGG-IRCEKSTSLLKSIGYD 197 (247)
T ss_pred hcCCCeEEEECCCC-hHHHHHHHHHHHcCCC
Confidence 34556899999665 7899999999999975
No 416
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=42.52 E-value=1.3e+02 Score=21.78 Aligned_cols=47 Identities=9% Similarity=0.148 Sum_probs=31.6
Q ss_pred CcEEEEEcCC---CchHHHHHHHHHHcCCCcEEEE-eccCCCcHHHHHHHH
Q 037937 11 KAAVIFTKSS---CCMCHSIKTLFYELGASPAIHE-LDQDANGREIEWALR 57 (102)
Q Consensus 11 ~~v~iy~~~~---Cp~C~~~~~~l~~~~v~~~~~~-vd~~~~~~~~~~~l~ 57 (102)
.++.+.+.+. .++..++...|++.++++..++ +..++....+.+.+.
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~ 79 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAE 79 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHH
Confidence 4666666553 3567889999999999887765 555666555555443
No 417
>PRK12559 transcriptional regulator Spx; Provisional
Probab=42.00 E-value=37 Score=20.86 Aligned_cols=59 Identities=8% Similarity=-0.055 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHc-----------CCCcEEEEeccCCC-cHHHHHHHHhhCCCCCccEEEECCEEEechHH
Q 037937 22 CMCHSIKTLFYEL-----------GASPAIHELDQDAN-GREIEWALRALGCNPSVPAVFIGGRYVGSAKD 80 (102)
Q Consensus 22 p~C~~~~~~l~~~-----------~v~~~~~~vd~~~~-~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~ 80 (102)
|.-..++.+|+.. +-.|+...++...- ..++.+.+.+...--.-|.|..+++.+-|+++
T Consensus 37 ~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~iGf~~ 107 (131)
T PRK12559 37 MTVDELKSILRLTEEGATEIISTRSKTFQDLNINIEELSLNEFYKLIIEHPLMLRRPIMLDEKRLQIGFND 107 (131)
T ss_pred CCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCcccCCHHHHHHHHHhCcceEeCCEEEeCCEEEEcCCH
Confidence 3444555555553 33455555443222 23444555554444456988889988888864
No 418
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=41.85 E-value=24 Score=21.05 Aligned_cols=17 Identities=24% Similarity=0.651 Sum_probs=13.7
Q ss_pred CCCccEEEECCEEEech
Q 037937 62 NPSVPAVFIGGRYVGSA 78 (102)
Q Consensus 62 ~~tvP~ifi~g~~igg~ 78 (102)
...-|.|+|||+.+|..
T Consensus 39 ~~~~~~v~vdg~~ig~l 55 (117)
T PF11008_consen 39 SAVKPDVYVDGELIGEL 55 (117)
T ss_pred ccccceEEECCEEEEEe
Confidence 35668999999999864
No 419
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.46 E-value=1.3e+02 Score=21.34 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE
Q 037937 21 CCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAV 68 (102)
Q Consensus 21 Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i 68 (102)
-.|=+...+..++.|++++.+.++.+-...++.+.+.+.+....+=-|
T Consensus 47 ~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GI 94 (285)
T PRK14189 47 QVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGI 94 (285)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeE
Confidence 344456677789999999999998877767777777776654444333
No 420
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=41.32 E-value=51 Score=16.80 Aligned_cols=18 Identities=22% Similarity=0.576 Sum_probs=12.9
Q ss_pred CCCchHH-HHHHHHHHc-CC
Q 037937 19 SSCCMCH-SIKTLFYEL-GA 36 (102)
Q Consensus 19 ~~Cp~C~-~~~~~l~~~-~v 36 (102)
=.|+.|. ++.+.|.+. |+
T Consensus 7 m~C~~C~~~v~~~l~~~~GV 26 (62)
T PF00403_consen 7 MTCEGCAKKVEKALSKLPGV 26 (62)
T ss_dssp TTSHHHHHHHHHHHHTSTTE
T ss_pred cccHHHHHHHHHHHhcCCCC
Confidence 4799996 567777765 55
No 421
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=41.29 E-value=24 Score=18.82 Aligned_cols=12 Identities=33% Similarity=1.126 Sum_probs=9.9
Q ss_pred EEEECCEEEech
Q 037937 67 AVFIGGRYVGSA 78 (102)
Q Consensus 67 ~ifi~g~~igg~ 78 (102)
.|++||+++|-.
T Consensus 14 ~V~vdg~~~G~t 25 (71)
T PF08308_consen 14 EVYVDGKYIGTT 25 (71)
T ss_pred EEEECCEEeccC
Confidence 589999999943
No 422
>PRK10670 hypothetical protein; Provisional
Probab=40.92 E-value=61 Score=20.54 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCCcEEEEeccCC
Q 037937 26 SIKTLFYELGASPAIHELDQDA 47 (102)
Q Consensus 26 ~~~~~l~~~~v~~~~~~vd~~~ 47 (102)
.+.++|++.+++|+..+++.++
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~~ 24 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHDP 24 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccCC
Confidence 4778999999999997776554
No 423
>PF03691 UPF0167: Uncharacterised protein family (UPF0167); InterPro: IPR005363 The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.
Probab=40.84 E-value=46 Score=21.83 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=37.2
Q ss_pred CCchHHHHHHHHHHcCCCcE-EEEeccCCCcHH-HHHHHHhhCCCCCccE-----------EEECCEEEechHHHHhHHH
Q 037937 20 SCCMCHSIKTLFYELGASPA-IHELDQDANGRE-IEWALRALGCNPSVPA-----------VFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~v~~~-~~~vd~~~~~~~-~~~~l~~~~g~~tvP~-----------ifi~g~~igg~~~~~~~~~ 86 (102)
-||+|..-=+.-++....|. ..++.......+ +.+.+.+..|..++-+ -|++- .|..|+.++
T Consensus 51 lCPwCIAdG~AA~kfdg~F~d~~~~~~~~~~~~~~~El~~RTPGy~sWQqe~Wl~hC~D~CaFlG~---vg~~El~~~-- 125 (176)
T PF03691_consen 51 LCPWCIADGSAAKKFDGEFQDDADLEGVGIDPEKLEELFHRTPGYSSWQQEYWLAHCDDYCAFLGY---VGWEELKAM-- 125 (176)
T ss_pred cCHhHhcCcHhHHhcCeEeecchhcccccCCHHHHHHHHhcCCCCcccccchhhhhcCCHHHhcCC---CCHHHHHHH--
Confidence 59999866666666555442 223333212233 3344444445444432 13332 267788777
Q ss_pred cCcHHHHHHh
Q 037937 87 DGSLKQMLID 96 (102)
Q Consensus 87 ~g~L~~~l~~ 96 (102)
.+.+++++.+
T Consensus 126 ~~~~~~~~~~ 135 (176)
T PF03691_consen 126 PEELEEVLED 135 (176)
T ss_pred HHHHHHHHHH
Confidence 4566666654
No 424
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.40 E-value=1.3e+02 Score=21.24 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=39.1
Q ss_pred cEEEEEcCCCc----hHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 12 AAVIFTKSSCC----MCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~iy~~~~Cp----~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
++.+.....-| |=+...+..++.|++++.+.++.+....++.+.+.+.+....+=-|++
T Consensus 33 ~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIiv 95 (282)
T PRK14180 33 KLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILV 95 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 44444444444 444566678899999999999887776777777777655544433433
No 425
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=39.78 E-value=1.3e+02 Score=20.85 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=46.6
Q ss_pred hHHhhhc---CCcEEEEEcCCCc-hHHHH----HHHHHHcCC-CcEEEEeccCCCcHHHHHHHHhh--CCCCCccEEEEC
Q 037937 3 RVRDLAS---KKAAVIFTKSSCC-MCHSI----KTLFYELGA-SPAIHELDQDANGREIEWALRAL--GCNPSVPAVFIG 71 (102)
Q Consensus 3 ~v~~~~~---~~~v~iy~~~~Cp-~C~~~----~~~l~~~~v-~~~~~~vd~~~~~~~~~~~l~~~--~g~~tvP~ifi~ 71 (102)
.+++.+- ...+++|.-.+-. +...+ -.+|++.|. +..+..+...|....+.+.|++. .+..-.|..++.
T Consensus 126 aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvA 205 (265)
T COG4822 126 AIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVA 205 (265)
T ss_pred HHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEee
Confidence 4455443 3446666554332 22222 345677887 56777888888888877777664 344677999999
Q ss_pred CEEE
Q 037937 72 GRYV 75 (102)
Q Consensus 72 g~~i 75 (102)
|.+.
T Consensus 206 G~Ha 209 (265)
T COG4822 206 GDHA 209 (265)
T ss_pred chhh
Confidence 9874
No 426
>PLN02880 tyrosine decarboxylase
Probab=39.50 E-value=1e+02 Score=23.37 Aligned_cols=71 Identities=10% Similarity=0.107 Sum_probs=41.3
Q ss_pred CcEEEEEcCCCchHH-HHHHHHHHcCCC---cEEEEeccC----CCcHHHHHHHHhhCCCCCccEEEE---CCEEEechH
Q 037937 11 KAAVIFTKSSCCMCH-SIKTLFYELGAS---PAIHELDQD----ANGREIEWALRALGCNPSVPAVFI---GGRYVGSAK 79 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~-~~~~~l~~~~v~---~~~~~vd~~----~~~~~~~~~l~~~~g~~tvP~ifi---~g~~igg~~ 79 (102)
.++++|.+..+.+|. ++..+ +|+. ...+.+|.+ -+...+++.+.+.......|.+++ +-...|..|
T Consensus 180 ~~~vv~~S~~aH~Sv~Kaa~~---lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD 256 (490)
T PLN02880 180 EKLVVYASDQTHSALQKACQI---AGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD 256 (490)
T ss_pred CCeEEEEcCCchHHHHHHHHH---cCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC
Confidence 468899988888884 34444 3543 455666532 233456666655322335676654 334567778
Q ss_pred HHHhH
Q 037937 80 DVISL 84 (102)
Q Consensus 80 ~~~~~ 84 (102)
++.++
T Consensus 257 pl~eI 261 (490)
T PLN02880 257 PLLEL 261 (490)
T ss_pred cHHHH
Confidence 77654
No 427
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=39.47 E-value=51 Score=24.56 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCCcEEEEeccCCCc-----HHHHHHHHhhCCCCCccEEEECCEEE
Q 037937 26 SIKTLFYELGASPAIHELDQDANG-----REIEWALRALGCNPSVPAVFIGGRYV 75 (102)
Q Consensus 26 ~~~~~l~~~~v~~~~~~vd~~~~~-----~~~~~~l~~~~g~~tvP~ifi~g~~i 75 (102)
..+++.++++++--+.-....-.. ..+++.+.+ ..+|.+.+++.+.
T Consensus 352 ~l~~li~e~~vDGVI~~~~~~C~~~s~e~~~ik~~l~~----~GIP~L~ietD~~ 402 (430)
T TIGR03191 352 MMLNIARDWNVDGCMLHLNRGCEGLSIGIMENRLAIAK----AGIPIMTFEGNMG 402 (430)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCccchHhHHHHHHHHHH----cCCCEEEEECCCC
Confidence 445556667766444333332221 123333432 3478888777654
No 428
>PHA00729 NTP-binding motif containing protein
Probab=39.11 E-value=1.2e+02 Score=20.60 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcC
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELG 35 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~ 35 (102)
.+++++.|++.-.+-+..+..+.+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999888765
No 429
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=38.86 E-value=87 Score=18.73 Aligned_cols=15 Identities=7% Similarity=0.031 Sum_probs=9.4
Q ss_pred HHhhCCCCCccEEEE
Q 037937 56 LRALGCNPSVPAVFI 70 (102)
Q Consensus 56 l~~~~g~~tvP~ifi 70 (102)
+...-+..++|.+.+
T Consensus 68 la~~l~~~~~P~~~~ 82 (116)
T cd02991 68 VSQALRERTYPFLAM 82 (116)
T ss_pred HHHHhCCCCCCEEEE
Confidence 334446678998843
No 430
>PRK07758 hypothetical protein; Provisional
Probab=38.56 E-value=31 Score=20.34 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=7.4
Q ss_pred HHHHHHHHcCCC
Q 037937 26 SIKTLFYELGAS 37 (102)
Q Consensus 26 ~~~~~l~~~~v~ 37 (102)
++.+.|.+.||.
T Consensus 45 RA~N~Lk~AGI~ 56 (95)
T PRK07758 45 PARRALEHHGIH 56 (95)
T ss_pred HHHHHHHHcCCC
Confidence 556666666664
No 431
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=38.54 E-value=34 Score=22.74 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=19.9
Q ss_pred HHHHHHhhCCCCCccE-EEECCEEEechHHHHhHHH
Q 037937 52 IEWALRALGCNPSVPA-VFIGGRYVGSAKDVISLHV 86 (102)
Q Consensus 52 ~~~~l~~~~g~~tvP~-ifi~g~~igg~~~~~~~~~ 86 (102)
++..|.+.-+-.++|- .||+++---+..++.++..
T Consensus 101 ~rh~l~~~~~~g~vP~IkFV~DK~~~~l~e~d~ll~ 136 (207)
T KOG4700|consen 101 IRHRLEESIGIGTVPEIKFVGDKALLMLQEMDKLLR 136 (207)
T ss_pred HHHHHHHHhccccCCceEEecchHHHHHHHHHHHHH
Confidence 3344444455566765 4898886555555544443
No 432
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=38.51 E-value=1.1e+02 Score=19.99 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=31.7
Q ss_pred EEEEEcCCCchHH-HHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHh-----hCCCCCccEEEECC
Q 037937 13 AVIFTKSSCCMCH-SIKTLFYELGASPAIHELDQDANGREIEWALRA-----LGCNPSVPAVFIGG 72 (102)
Q Consensus 13 v~iy~~~~Cp~C~-~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~-----~~g~~tvP~ifi~g 72 (102)
++=++-++-.++. .+-.++.+...++..+++..+...+++++.+.. ..+++..|.++|.-
T Consensus 36 ~iNLGfsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~ 101 (178)
T PF14606_consen 36 VINLGFSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSP 101 (178)
T ss_dssp EEEEE-TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE-
T ss_pred eEeeeecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 3334444433443 557777887777788887766544443333322 25778999999973
No 433
>CHL00195 ycf46 Ycf46; Provisional
Probab=38.28 E-value=1.3e+02 Score=22.96 Aligned_cols=36 Identities=3% Similarity=0.002 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEecc
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQ 45 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~ 45 (102)
+..+.+|+-|+|.-..-++.+-.+.+.++..++...
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~ 294 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGK 294 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHH
Confidence 446999999999999999999999999987777643
No 434
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=38.12 E-value=51 Score=20.44 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=17.6
Q ss_pred CcEEEEEc-CCCchHHHHHHHHHH
Q 037937 11 KAAVIFTK-SSCCMCHSIKTLFYE 33 (102)
Q Consensus 11 ~~v~iy~~-~~Cp~C~~~~~~l~~ 33 (102)
..|.+|+. +.|+.|..+..-|..
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~ 120 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKK 120 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHH
Confidence 57889997 689999987655544
No 435
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.96 E-value=1.5e+02 Score=21.11 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=38.4
Q ss_pred cEEEEEcCC----CchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE
Q 037937 12 AAVIFTKSS----CCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAV 68 (102)
Q Consensus 12 ~v~iy~~~~----Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i 68 (102)
.+.++.-.. ..|=+.-.+..++.|++++.++++.+-...++.+.+.+.+....+=-|
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GI 93 (295)
T PRK14174 33 GLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGI 93 (295)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEE
Confidence 444444443 445556677789999999999998876666777777776554444333
No 436
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=37.82 E-value=84 Score=18.30 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=11.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCC
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGAS 37 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~ 37 (102)
+|++|...++....++...|...|.+
T Consensus 81 ~vv~~c~~g~~~a~~~~~~l~~~G~~ 106 (122)
T cd01448 81 TVVVYDDGGGFFAARAWWTLRYFGHE 106 (122)
T ss_pred EEEEECCCCCccHHHHHHHHHHcCCC
Confidence 34444444333444444445555543
No 437
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=37.57 E-value=96 Score=18.86 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=43.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEecc--C--CCcHHHHHHHHhhCCCCCccEEEECCE------EEechHHH
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQ--D--ANGREIEWALRALGCNPSVPAVFIGGR------YVGSAKDV 81 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~--~--~~~~~~~~~l~~~~g~~tvP~ifi~g~------~igg~~~~ 81 (102)
+|++|.=.||+|-..-..=..+...|....-|.. . =+...+..+|.. | .-.|+|-|= +..|....
T Consensus 1 kIl~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~--G---ADGV~V~gC~~g~Ch~~~Gn~~a 75 (124)
T PF02662_consen 1 KILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEK--G---ADGVLVAGCHPGDCHYREGNYRA 75 (124)
T ss_pred CEEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHc--C---CCEEEEeCCCCCCCCcchhhHHH
Confidence 5889998999987643333444455543333332 1 122334455543 3 334577443 34444433
Q ss_pred HhHHHcCcHHHHHHhccc
Q 037937 82 ISLHVDGSLKQMLIDARA 99 (102)
Q Consensus 82 ~~~~~~g~L~~~l~~~g~ 99 (102)
.+ .-..+.+.|+..|.
T Consensus 76 ~~--Rv~~~k~~L~~~Gi 91 (124)
T PF02662_consen 76 EK--RVERLKKLLEELGI 91 (124)
T ss_pred HH--HHHHHHHHHHHcCC
Confidence 33 33467778877775
No 438
>COG1631 RPL42A Ribosomal protein L44E [Translation, ribosomal structure and biogenesis]
Probab=37.39 E-value=9.2 Score=22.36 Aligned_cols=9 Identities=22% Similarity=0.840 Sum_probs=6.8
Q ss_pred cCCCchHHH
Q 037937 18 KSSCCMCHS 26 (102)
Q Consensus 18 ~~~Cp~C~~ 26 (102)
..+||+|++
T Consensus 8 ~tyCp~Ckk 16 (94)
T COG1631 8 RTYCPYCKK 16 (94)
T ss_pred eecCccccc
Confidence 468999974
No 439
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=37.34 E-value=50 Score=19.49 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.4
Q ss_pred CCccEEE-ECCEEEechHHHHhHHH
Q 037937 63 PSVPAVF-IGGRYVGSAKDVISLHV 86 (102)
Q Consensus 63 ~tvP~if-i~g~~igg~~~~~~~~~ 86 (102)
..||.+| .+...+-|.||+.+...
T Consensus 3 ~dV~v~~~~~~v~WvgaDEil~IL~ 27 (97)
T PF04512_consen 3 TDVPVFFDVDMVLWVGADEILSILR 27 (97)
T ss_pred CCeeEEEecCceEEecHHHHHHHhC
Confidence 4689999 99999999999887654
No 440
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=37.20 E-value=71 Score=17.21 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=15.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCCC
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGAS 37 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v~ 37 (102)
.+|++|. ..+..+..+...|.+.|.+
T Consensus 57 ~~iv~~c-~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 57 KPVVVYC-RSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CeEEEEe-CCCcHHHHHHHHHHHcCCC
Confidence 3566666 4555666666666666664
No 441
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.76 E-value=1.6e+02 Score=21.04 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=36.2
Q ss_pred CCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 20 SCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
...|=+...+..++.|+.++.+.+..+-...++.+.+.+.+....+=-|.+
T Consensus 45 s~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 95 (297)
T PRK14167 45 SETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILV 95 (297)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 355556677778999999999999887666667777777765554444433
No 442
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.70 E-value=1.5e+02 Score=20.92 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=38.5
Q ss_pred cEEEEEcCC----CchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE
Q 037937 12 AAVIFTKSS----CCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAV 68 (102)
Q Consensus 12 ~v~iy~~~~----Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i 68 (102)
++.++--.. ..|=+...+..++.|+.++.+++..+....++.+.+.+.+.-..+=-|
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GI 94 (284)
T PRK14190 34 GLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGI 94 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEE
Confidence 344444443 445556677788999999999998877767777777776554444333
No 443
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=36.20 E-value=53 Score=20.91 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=22.3
Q ss_pred CCcEEEEE-cCCCchHHHH-HHHHHHcCCCc-EEEEe
Q 037937 10 KKAAVIFT-KSSCCMCHSI-KTLFYELGASP-AIHEL 43 (102)
Q Consensus 10 ~~~v~iy~-~~~Cp~C~~~-~~~l~~~~v~~-~~~~v 43 (102)
...++||. ++-|++|... .++.+++|++. .+++.
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEec
Confidence 33456665 4689999855 56668899974 44443
No 444
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=36.17 E-value=81 Score=19.54 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCCcEEEEeccCCC
Q 037937 26 SIKTLFYELGASPAIHELDQDAN 48 (102)
Q Consensus 26 ~~~~~l~~~~v~~~~~~vd~~~~ 48 (102)
.+.++|++.+++|+.++-+..+.
T Consensus 3 ~~~~~L~~~~i~~~~~~h~~~~~ 25 (152)
T cd00002 3 PAIRLLDKAKIPYELHEYEHDED 25 (152)
T ss_pred HHHHHHHHcCCCeEEEeecCCCC
Confidence 46789999999999999876553
No 445
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=36.05 E-value=81 Score=21.28 Aligned_cols=71 Identities=8% Similarity=0.051 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCcEEEEeccCCCc--HHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHcCcHHHHHHhcc
Q 037937 26 SIKTLFYELGASPAIHELDQDANG--REIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDGSLKQMLIDAR 98 (102)
Q Consensus 26 ~~~~~l~~~~v~~~~~~vd~~~~~--~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~g~L~~~l~~~g 98 (102)
.+..||++-.|+..- +|..|.. --++..|+-.-+--|-|.++.-+++-||.|--.+..--.-|..+..+.|
T Consensus 130 ~a~~WL~~VEI~~~R--iDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~ 202 (258)
T COG4107 130 EAQDWLEEVEIDLDR--IDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG 202 (258)
T ss_pred HHHHHHHhcccCccc--ccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcC
Confidence 566778776665433 3333322 1144555444445678888888899999986554433333344444433
No 446
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=35.99 E-value=1.6e+02 Score=21.10 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=33.4
Q ss_pred EEcCCCchHHHHHHHHHHcC---CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHH
Q 037937 16 FTKSSCCMCHSIKTLFYELG---ASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDV 81 (102)
Q Consensus 16 y~~~~Cp~C~~~~~~l~~~~---v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~ 81 (102)
..--+|..|++++.+|+.+. .++.++-||.+.+. ++....... ...+|.|-+.| .+|.+++.
T Consensus 80 lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~--L~~a~~~L~-~~~~p~l~v~~-l~gdy~~~ 144 (319)
T TIGR03439 80 LVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSE--LQRTLAELP-LGNFSHVRCAG-LLGTYDDG 144 (319)
T ss_pred EEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHH--HHHHHHhhh-hccCCCeEEEE-EEecHHHH
Confidence 33568999999999887653 34566666655332 222333222 13455555543 33444443
No 447
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.86 E-value=1.6e+02 Score=20.84 Aligned_cols=59 Identities=12% Similarity=0.213 Sum_probs=39.5
Q ss_pred cEEEEEcCC----CchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 12 AAVIFTKSS----CCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~iy~~~~----Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
++.+..-.. -.|=+.-.+..++.|+.++.+.++.+-...++.+.+.+.+...++=-|++
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 94 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILV 94 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 444444443 44445667778899999999999887766777777877665554444443
No 448
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.81 E-value=1.6e+02 Score=20.86 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=36.1
Q ss_pred CCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE
Q 037937 20 SCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVF 69 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if 69 (102)
...|=+...+..++.|+.++.+.+..+....++.+.+.+.+.-+.+=-|+
T Consensus 45 s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 94 (285)
T PRK14191 45 SQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGIL 94 (285)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 45555677778899999999999988877677777787776544443333
No 449
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.49 E-value=1.6e+02 Score=20.82 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=38.9
Q ss_pred cEEEEEcCCCc----hHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 12 AAVIFTKSSCC----MCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 12 ~v~iy~~~~Cp----~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
++.+..-..-| |-+.-.+..++.|+.++.+.+..+....++.+.+.+.+...++=-|++
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIiv 96 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILV 96 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 44444444444 445666777889999999999887766677777777665544444433
No 450
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.47 E-value=1.7e+02 Score=21.19 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=15.2
Q ss_pred EEEEEcC----CCchHHHHHHHHH
Q 037937 13 AVIFTKS----SCCMCHSIKTLFY 32 (102)
Q Consensus 13 v~iy~~~----~Cp~C~~~~~~l~ 32 (102)
|++|+.. .|+-|+.+.+-+.
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~ 87 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQ 87 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHH
Confidence 7788873 7999998876653
No 451
>PHA03005 sulfhydryl oxidase; Provisional
Probab=35.43 E-value=33 Score=20.12 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=13.9
Q ss_pred CCCchHH-HHHHHHHHcCC
Q 037937 19 SSCCMCH-SIKTLFYELGA 36 (102)
Q Consensus 19 ~~Cp~C~-~~~~~l~~~~v 36 (102)
=-||.|+ .|++.+++.++
T Consensus 41 LPC~~Cr~HA~~ai~knni 59 (96)
T PHA03005 41 LPCPACRRHAKEAIEKNNI 59 (96)
T ss_pred CCCHHHHHHHHHHHhhcCc
Confidence 3599997 78888887665
No 452
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=35.28 E-value=2e+02 Score=21.97 Aligned_cols=78 Identities=17% Similarity=0.277 Sum_probs=43.6
Q ss_pred hhcCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCc----HHHHHHHHhhCCCCCccEEE---ECCEEEechH
Q 037937 7 LASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANG----REIEWALRALGCNPSVPAVF---IGGRYVGSAK 79 (102)
Q Consensus 7 ~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~----~~~~~~l~~~~g~~tvP~if---i~g~~igg~~ 79 (102)
+..-.+.++|++..|.|+.+--+.+-..|- .+.+.|+.++.+ .++++.+...-....+|.++ .+-...|.+|
T Consensus 192 m~~~p~lilFtSeesHYSi~kaAa~lg~gt-d~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFD 270 (510)
T KOG0629|consen 192 MFALPPLILFTSEESHYSIKKAAAFLGLGT-DHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFD 270 (510)
T ss_pred hhcCCcEEEEecccchhhHHHHHHHhccCC-ceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccC
Confidence 344568999999999999755555544454 333444444433 23333332221223466554 3446678888
Q ss_pred HHHhHH
Q 037937 80 DVISLH 85 (102)
Q Consensus 80 ~~~~~~ 85 (102)
++....
T Consensus 271 dL~~ia 276 (510)
T KOG0629|consen 271 DLNGIA 276 (510)
T ss_pred cHHHHH
Confidence 876543
No 453
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=35.23 E-value=1.5e+02 Score=20.40 Aligned_cols=84 Identities=11% Similarity=0.262 Sum_probs=40.0
Q ss_pred cEEEEEcC--CCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEE-EechHHHHh---H-
Q 037937 12 AAVIFTKS--SCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRY-VGSAKDVIS---L- 84 (102)
Q Consensus 12 ~v~iy~~~--~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~-igg~~~~~~---~- 84 (102)
.+++|.+| .-|-=.+++.+|++.++|.-. |...| ....++++.+.+ +=.|.++-.. ||.-.+++. |
T Consensus 62 Dfvi~isPNpaaPGP~kARE~l~~s~~Paii--igDaP-g~~vkdeleeqG----lGYIivk~DpmiGArREFLDPvEMA 134 (277)
T COG1927 62 DFVIYISPNPAAPGPKKAREILSDSDVPAII--IGDAP-GLKVKDELEEQG----LGYIIVKADPMIGARREFLDPVEMA 134 (277)
T ss_pred CEEEEeCCCCCCCCchHHHHHHhhcCCCEEE--ecCCc-cchhHHHHHhcC----CeEEEecCCcccchhhhhcCHHHHH
Confidence 46666665 356666777777766665432 23333 333444454422 2234443332 333333221 1
Q ss_pred HHcCcHHHHHHhcccccC
Q 037937 85 HVDGSLKQMLIDARAIWF 102 (102)
Q Consensus 85 ~~~g~L~~~l~~~g~~~~ 102 (102)
.-+.++-+.|...|++|+
T Consensus 135 ~fNaDv~kVLa~tGa~R~ 152 (277)
T COG1927 135 SFNADVMKVLAATGAFRL 152 (277)
T ss_pred hhhhHHHHHHHhccHHHH
Confidence 123355566666676653
No 454
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=35.15 E-value=1.4e+02 Score=20.01 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCE
Q 037937 23 MCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGR 73 (102)
Q Consensus 23 ~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~ 73 (102)
....++++|+++++.--.+.+..+....++.+.+. +....+|.+.+..+
T Consensus 137 ~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~--~~~~y~p~iiV~NK 185 (233)
T cd01896 137 DEKTIKAILREYKIHNADVLIREDITVDDLIDVIE--GNRVYIPCLYVYNK 185 (233)
T ss_pred CHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHh--CCceEeeEEEEEEC
Confidence 45789999999999777777766666666666553 33456787776544
No 455
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=35.13 E-value=1.7e+02 Score=21.00 Aligned_cols=46 Identities=9% Similarity=0.287 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCCCcEEEE-eccCCCcHHHHHHH
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGASPAIHE-LDQDANGREIEWAL 56 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~-vd~~~~~~~~~~~l 56 (102)
.++.+.+.+....-..++..|++.++++.+++ +..++....+.+..
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~ 70 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGI 70 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHH
Confidence 46777776665556778888998888776654 66666655544433
No 456
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=35.09 E-value=67 Score=17.76 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=14.9
Q ss_pred CCCccEEEECCEEEechH
Q 037937 62 NPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 62 ~~tvP~ifi~g~~igg~~ 79 (102)
-..-|.+.|||+++++.+
T Consensus 52 C~~gP~~~v~~~~~~~~~ 69 (80)
T cd03081 52 CACSPAAMIDGEVHGRVD 69 (80)
T ss_pred cCCCCEEEECCEEECCCC
Confidence 467899999999998764
No 457
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=35.08 E-value=11 Score=22.86 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHHcCCC-c--EEEEeccCCCcHH
Q 037937 21 CCMCHSIKTLFYELGAS-P--AIHELDQDANGRE 51 (102)
Q Consensus 21 Cp~C~~~~~~l~~~~v~-~--~~~~vd~~~~~~~ 51 (102)
||.|.+....|.+...= | +-..+|.+-++.+
T Consensus 72 CP~C~K~TKmLGr~D~CM~C~~pLTLd~~legke 105 (114)
T PF11023_consen 72 CPNCGKQTKMLGRVDACMHCKEPLTLDPSLEGKE 105 (114)
T ss_pred CCCCCChHhhhchhhccCcCCCcCccCchhhcch
Confidence 99999999999775432 2 3344554444443
No 458
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=33.78 E-value=1.7e+02 Score=20.95 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=38.8
Q ss_pred cEEEEEc-CCCchHHHHHHHHHHcCCCcEEEEeccC-CCcHH-HHHHHHhhCCCCCccEEEECCEEEechHH
Q 037937 12 AAVIFTK-SSCCMCHSIKTLFYELGASPAIHELDQD-ANGRE-IEWALRALGCNPSVPAVFIGGRYVGSAKD 80 (102)
Q Consensus 12 ~v~iy~~-~~Cp~C~~~~~~l~~~~v~~~~~~vd~~-~~~~~-~~~~l~~~~g~~tvP~ifi~g~~igg~~~ 80 (102)
.++|.+. +....|.+|...|++.|++.+++|+-.- |-..+ +.+.+++ ++ .+ .++-++...||+.+
T Consensus 203 ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~-t~--~v-v~vEE~~~~gGlG~ 270 (327)
T CHL00144 203 DITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKK-TH--KV-LIVEECMKTGGIGA 270 (327)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHh-hC--cE-EEEECCCCCCCHHH
Confidence 3444333 4577888999999999999999998764 33333 3333322 22 12 12334445688854
No 459
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.48 E-value=1.7e+02 Score=20.63 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=35.3
Q ss_pred CchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 21 CCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 21 Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
..|=+.-.+..++.|+.++.+++..+....++.+.+.+.+...++=-|++
T Consensus 45 ~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIiv 94 (282)
T PRK14166 45 QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILV 94 (282)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 44555667778899999999999887666667777777665554433433
No 460
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=33.40 E-value=68 Score=18.50 Aligned_cols=21 Identities=29% Similarity=0.743 Sum_probs=13.6
Q ss_pred HHHHHHHHhhCCCCCccEEEECCE
Q 037937 50 REIEWALRALGCNPSVPAVFIGGR 73 (102)
Q Consensus 50 ~~~~~~l~~~~g~~tvP~ifi~g~ 73 (102)
.++++.+++. ..+|.+|+.+.
T Consensus 74 ~~Lr~~lr~~---~GvPvi~l~~~ 94 (101)
T PF04900_consen 74 KELRRRLRKI---PGVPVIYLRRN 94 (101)
T ss_pred HHHHHHHhcC---CCCCEEEEECC
Confidence 4455566533 45999998864
No 461
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=33.35 E-value=49 Score=23.06 Aligned_cols=23 Identities=4% Similarity=0.095 Sum_probs=19.7
Q ss_pred EEEcCCCchHHHHHHHHHH-cCCC
Q 037937 15 IFTKSSCCMCHSIKTLFYE-LGAS 37 (102)
Q Consensus 15 iy~~~~Cp~C~~~~~~l~~-~~v~ 37 (102)
++-+..||.++.+++.|++ +|++
T Consensus 169 i~~t~~~pla~~~R~~lr~~~~~~ 192 (268)
T PRK15116 169 LAKTIQDPLAAKLRERLKSDFGVV 192 (268)
T ss_pred eecccCChHHHHHHHHHHHhhCCC
Confidence 4666789999999999998 7876
No 462
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=33.28 E-value=57 Score=19.13 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=3.6
Q ss_pred HHHHHHcCC
Q 037937 28 KTLFYELGA 36 (102)
Q Consensus 28 ~~~l~~~~v 36 (102)
+...++.++
T Consensus 83 Kk~ie~~~i 91 (101)
T COG5561 83 KKEIEKMGI 91 (101)
T ss_pred HHHHHHhCC
Confidence 333344443
No 463
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=32.86 E-value=1.4e+02 Score=20.14 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCC-cEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHcC
Q 037937 26 SIKTLFYELGAS-PAIHELDQDANGREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDG 88 (102)
Q Consensus 26 ~~~~~l~~~~v~-~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~g 88 (102)
..-+.+.+.|.+ ...+|+|...........+++......+|. .++| -|...+++.++...|
T Consensus 39 ~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v-~vgG-Gir~~edv~~~l~~G 100 (233)
T cd04723 39 DVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGL-WVDG-GIRSLENAQEWLKRG 100 (233)
T ss_pred HHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCE-EEec-CcCCHHHHHHHHHcC
Confidence 344555666886 578888865322222233444433334664 4555 355667777776665
No 464
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.63 E-value=1.8e+02 Score=20.56 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=37.9
Q ss_pred cEEEEEcCCCc----hHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE
Q 037937 12 AAVIFTKSSCC----MCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAV 68 (102)
Q Consensus 12 ~v~iy~~~~Cp----~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i 68 (102)
++.+.....-| |=+...+..++.|+.++.+.++.+....++.+.+.+.+....+=-|
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GI 94 (284)
T PRK14179 34 GLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGI 94 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEE
Confidence 45444444444 4445567788999999999999877767777777776554444333
No 465
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=32.57 E-value=1.4e+02 Score=23.72 Aligned_cols=66 Identities=8% Similarity=-0.002 Sum_probs=41.7
Q ss_pred cEEEEE-cCCCchHHHHHHHHHHcCCCcEEEEecc-CCCcHHHHHHHHhhCCCCCccEEEECCEEEechHH
Q 037937 12 AAVIFT-KSSCCMCHSIKTLFYELGASPAIHELDQ-DANGREIEWALRALGCNPSVPAVFIGGRYVGSAKD 80 (102)
Q Consensus 12 ~v~iy~-~~~Cp~C~~~~~~l~~~~v~~~~~~vd~-~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~ 80 (102)
+|.+.. -.-|+.|..+..-|.+.|+...++|--- .|-..++...|.+. -.+=..+-+|...||+-.
T Consensus 503 ~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~---h~~~vtlEe~~~~GG~Gs 570 (627)
T COG1154 503 KVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKS---HDLVVTLEENVVDGGFGS 570 (627)
T ss_pred cEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhh---cCeEEEEecCcccccHHH
Confidence 444433 3579999999999999999999888554 34444433334332 222234556667888854
No 466
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.53 E-value=1.8e+02 Score=20.58 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=38.1
Q ss_pred cEEEEEcCCC----chHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE
Q 037937 12 AAVIFTKSSC----CMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVF 69 (102)
Q Consensus 12 ~v~iy~~~~C----p~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if 69 (102)
++.+..-..- .|-+.-.+..++.|++++.+.++.+-...++.+.+.+.+....+=-|+
T Consensus 31 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 92 (287)
T PRK14173 31 HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGIL 92 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 4544444433 445566777889999999999987766666667777765544443333
No 467
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=32.51 E-value=93 Score=18.63 Aligned_cols=73 Identities=23% Similarity=0.252 Sum_probs=38.8
Q ss_pred HHhhhcC-CcEEEEEcCC---CchHHHHHHHHHHcC----CCcEEEEeccCCCcHHHHHHHHhhCCCCCccEE--EECCE
Q 037937 4 VRDLASK-KAAVIFTKSS---CCMCHSIKTLFYELG----ASPAIHELDQDANGREIEWALRALGCNPSVPAV--FIGGR 73 (102)
Q Consensus 4 v~~~~~~-~~v~iy~~~~---Cp~C~~~~~~l~~~~----v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~ 73 (102)
+...+.. ...++|.... +|-+.-+--+|-++- -...---+. .+..++|+...|....|.+ |-+|+
T Consensus 19 ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~-----~~~e~~L~~r~gv~~~PaLvf~R~g~ 93 (107)
T PF07449_consen 19 LDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA-----RAAERALAARFGVRRWPALVFFRDGR 93 (107)
T ss_dssp HHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE-----HHHHHHHHHHHT-TSSSEEEEEETTE
T ss_pred HHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC-----chhHHHHHHHhCCccCCeEEEEECCE
Confidence 3444443 3456666654 455555444554432 222322333 2223456666788889976 57999
Q ss_pred EEechHHH
Q 037937 74 YVGSAKDV 81 (102)
Q Consensus 74 ~igg~~~~ 81 (102)
++|....+
T Consensus 94 ~lG~i~gi 101 (107)
T PF07449_consen 94 YLGAIEGI 101 (107)
T ss_dssp EEEEEESS
T ss_pred EEEEecCe
Confidence 98876533
No 468
>PRK13669 hypothetical protein; Provisional
Probab=32.45 E-value=97 Score=17.55 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=14.5
Q ss_pred CCCccEEEECCEEEechH
Q 037937 62 NPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 62 ~~tvP~ifi~g~~igg~~ 79 (102)
-..-|..+|||+.|-|-+
T Consensus 43 C~~~~FAlVng~~V~a~t 60 (78)
T PRK13669 43 CSEGLFALVNGEVVEGET 60 (78)
T ss_pred cccCceEEECCeEeecCC
Confidence 356789999999997754
No 469
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=32.38 E-value=1.1e+02 Score=18.16 Aligned_cols=40 Identities=5% Similarity=0.140 Sum_probs=25.4
Q ss_pred EEEEEcCCCchHH----HHHHHHHHcCCCcEEEEeccCCCcHHH
Q 037937 13 AVIFTKSSCCMCH----SIKTLFYELGASPAIHELDQDANGREI 52 (102)
Q Consensus 13 v~iy~~~~Cp~C~----~~~~~l~~~~v~~~~~~vd~~~~~~~~ 52 (102)
+.++..|....-+ ++.+.|...+.++.++.........++
T Consensus 2 ~~vi~Np~sG~~~~~~~~v~~~l~~~~~~~~~~~t~~~~~~~~~ 45 (130)
T PF00781_consen 2 VLVIINPKSGGGRAKWKKVEPALRAAGIDYEVIETESAGHAEAL 45 (130)
T ss_dssp EEEEEETTSTTSHHHHHHHHHHHHHTTCEEEEEEESSTTHHHHH
T ss_pred EEEEECCCCCCCchhHHHHHHHHHHcCCceEEEEEeccchHHHH
Confidence 4556665444333 568888999988888888763333333
No 470
>KOG3490 consensus Transcription elongation factor SPT4 [Transcription]
Probab=32.36 E-value=42 Score=20.21 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEec
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELD 44 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd 44 (102)
+-.|-+.+||.|. +|+-.|=.-.+.+.+
T Consensus 20 ~~~F~~dGC~Nc~----~l~mkgn~e~V~ecT 47 (111)
T KOG3490|consen 20 LNGFRKDGCENCP----MLNMKGNVENVYECT 47 (111)
T ss_pred hhhhhhcCCCCch----hhhhccCcceeEEec
Confidence 4468889999998 666666433444443
No 471
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=32.27 E-value=1.3e+02 Score=18.88 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=34.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhC--CCCCccEEEECCE
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALG--CNPSVPAVFIGGR 73 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~--g~~tvP~ifi~g~ 73 (102)
..+|++.-+..|+|..+++..-+ .|...-.+ ++..+.. ....+...+ ...++|.++|..+
T Consensus 67 ~g~IvLV~RG~CtF~~Kv~nAq~-aGA~avII-~n~~~~~--~~~m~~~~~~~~~v~IP~v~Is~~ 128 (153)
T cd02123 67 GSFIVLIRRGNCSFETKVRNAQR-AGYKAAIV-YNDESND--LISMSGNDQEIKGIDIPSVFVGKS 128 (153)
T ss_pred CCeEEEEECCCCCHHHHHHHHHH-CCCCEEEE-EECCCCc--ceeccCCCCCCcCCEEEEEEeeHH
Confidence 45788888899999999988555 46554332 1211111 111121111 1347999998765
No 472
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=32.14 E-value=1.1e+02 Score=21.56 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=23.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCc
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASP 38 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~ 38 (102)
++.+.|..+.|.-.++.+.|.++|+..
T Consensus 188 RtalVTAR~apah~RvI~TLr~Wgv~v 214 (264)
T PF06189_consen 188 RTALVTARSAPAHERVIRTLRSWGVRV 214 (264)
T ss_pred EEEEEEcCCCchhHHHHHHHHHcCCcH
Confidence 577888899999999999999999954
No 473
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=32.08 E-value=1e+02 Score=20.20 Aligned_cols=56 Identities=21% Similarity=0.134 Sum_probs=28.0
Q ss_pred CCchHHHH---HHHHHHcCCCcEEEEeccCCCcHH----HHHHHHhhCCCCCccEEEECCEEEechH
Q 037937 20 SCCMCHSI---KTLFYELGASPAIHELDQDANGRE----IEWALRALGCNPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 20 ~Cp~C~~~---~~~l~~~~v~~~~~~vd~~~~~~~----~~~~l~~~~g~~tvP~ifi~g~~igg~~ 79 (102)
..|.+.++ ++.+.+.+....+...+-.....+ +.+.+.+... +.+.+=|.-.||+-
T Consensus 10 Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~~~~----~~~~liGSSlGG~~ 72 (187)
T PF05728_consen 10 SSPQSFKAQALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEELKP----ENVVLIGSSLGGFY 72 (187)
T ss_pred CCCCCHHHHHHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHHhCCC----CCeEEEEEChHHHH
Confidence 35555555 556677776666665554433332 2222222221 11455556677765
No 474
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=32.01 E-value=2.1e+02 Score=21.02 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=32.4
Q ss_pred CcEEEEEcCC---CchHHHHHHHHHHcCCCcEEEE-eccCCCcHHHHHHHH
Q 037937 11 KAAVIFTKSS---CCMCHSIKTLFYELGASPAIHE-LDQDANGREIEWALR 57 (102)
Q Consensus 11 ~~v~iy~~~~---Cp~C~~~~~~l~~~~v~~~~~~-vd~~~~~~~~~~~l~ 57 (102)
.++.+++.+. .+...++...|++.|+++..++ +..++....+.+...
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~ 100 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVA 100 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHH
Confidence 4566666543 5677899999999999987774 655666655555443
No 475
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=31.90 E-value=2e+02 Score=20.85 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=31.6
Q ss_pred CcEEEEEcCC---CchHHHHHHHHHHcCCCcEEEE-eccCCCcHHHHHHH
Q 037937 11 KAAVIFTKSS---CCMCHSIKTLFYELGASPAIHE-LDQDANGREIEWAL 56 (102)
Q Consensus 11 ~~v~iy~~~~---Cp~C~~~~~~l~~~~v~~~~~~-vd~~~~~~~~~~~l 56 (102)
.++.+.+.+. .++..++...|++.++++.+++ +..++....+.+..
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~ 80 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGV 80 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHH
Confidence 4666665543 4678899999999999887774 66666655554443
No 476
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=31.88 E-value=40 Score=19.28 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=16.6
Q ss_pred CCchHHHHHHHHHHcCCC
Q 037937 20 SCCMCHSIKTLFYELGAS 37 (102)
Q Consensus 20 ~Cp~C~~~~~~l~~~~v~ 37 (102)
.|+-|+.|-.+|.+.|+.
T Consensus 28 CC~GC~~V~~~i~~~gL~ 45 (88)
T PF12156_consen 28 CCPGCQAVYQLIHENGLE 45 (88)
T ss_pred ccHHHHHHHHHHHHcchH
Confidence 599999999999999985
No 477
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=31.57 E-value=52 Score=20.50 Aligned_cols=18 Identities=22% Similarity=0.582 Sum_probs=15.0
Q ss_pred CCCccEEEECCEEEechH
Q 037937 62 NPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 62 ~~tvP~ifi~g~~igg~~ 79 (102)
...-|.+.|||++++..+
T Consensus 116 C~~aP~v~V~~~~y~~vt 133 (145)
T PF01257_consen 116 CDQAPVVMVDGEWYGNVT 133 (145)
T ss_dssp GGGSSEEEECCCEEESSS
T ss_pred cCCCCEEEECCEEECCCC
Confidence 356799999999998875
No 478
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=31.57 E-value=22 Score=21.00 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=20.3
Q ss_pred EEEechHHHHhHHHcCcHHHHHHhcc
Q 037937 73 RYVGSAKDVISLHVDGSLKQMLIDAR 98 (102)
Q Consensus 73 ~~igg~~~~~~~~~~g~L~~~l~~~g 98 (102)
.+||..|+..++.++|+|++.=..++
T Consensus 61 ~li~~iD~a~klaqeGnl~eAKaaak 86 (100)
T COG3783 61 ILIGQIDKADKLAQEGNLDEAKAAAK 86 (100)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 35778899999999999988654443
No 479
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=31.51 E-value=1.1e+02 Score=20.82 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=35.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECC
Q 037937 13 AVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGG 72 (102)
Q Consensus 13 v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g 72 (102)
|+=.++.+-|-|.-....|++++..|..+..-..+... .-..+.....|++||=+
T Consensus 115 vvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~-----cIpNYPe~nlPTl~VY~ 169 (240)
T KOG3170|consen 115 VVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATT-----CIPNYPESNLPTLLVYH 169 (240)
T ss_pred EEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccc-----ccCCCcccCCCeEEEee
Confidence 34466789999999999999998877443333322221 11223446789998743
No 480
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=31.50 E-value=98 Score=21.56 Aligned_cols=34 Identities=12% Similarity=-0.038 Sum_probs=26.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcEEEEecc
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQ 45 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~ 45 (102)
++--|-++|.--|+.|..++++-|++...++...
T Consensus 107 PFgtyeS~~sda~knAv~vmk~~g~~~vK~EgGs 140 (306)
T KOG2949|consen 107 PFGTYESSWSDAVKNAVRVMKEGGMDAVKLEGGS 140 (306)
T ss_pred CcccccccHHHHHHHHHHHHHhcCCceEEEccCc
Confidence 3444667788889999999999888777777665
No 481
>PF09248 DUF1965: Domain of unknown function (DUF1965); InterPro: IPR015328 Members of this family of fungal domains adopt a structure that consists of an alpha/beta motif. Their exact function has not, as yet, been determined []. ; PDB: 1N9E_A 1RKY_A 1W7C_A 3PGB_A.
Probab=31.32 E-value=87 Score=17.57 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=23.0
Q ss_pred CccEEEECCEEEechHHHHhHHHcCcHHHHHH
Q 037937 64 SVPAVFIGGRYVGSAKDVISLHVDGSLKQMLI 95 (102)
Q Consensus 64 tvP~ifi~g~~igg~~~~~~~~~~g~L~~~l~ 95 (102)
.+=-++-||++.-..++++++..+|++.+.-.
T Consensus 26 kv~gw~Yn~~fy~tteeFr~A~~~~~f~k~~~ 57 (74)
T PF09248_consen 26 KVLGWVYNGQFYPTTEEFREAWWSGDFKKLGP 57 (74)
T ss_dssp EEEEEEETTEEESSHHHHHHHHCSTT------
T ss_pred EEEEEEECCEEcccHHHHHHHHhCCCceecCC
Confidence 34457899999999999999999999987543
No 482
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=31.30 E-value=1.6e+02 Score=19.43 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=31.8
Q ss_pred HHHHHHHcCCC-cEEEEeccCCC-cHHHHHHHHhhCCCCCccEEEECCEEEechHHHHhHHHcC
Q 037937 27 IKTLFYELGAS-PAIHELDQDAN-GREIEWALRALGCNPSVPAVFIGGRYVGSAKDVISLHVDG 88 (102)
Q Consensus 27 ~~~~l~~~~v~-~~~~~vd~~~~-~~~~~~~l~~~~g~~tvP~ifi~g~~igg~~~~~~~~~~g 88 (102)
+-+.+.+.|++ ..+.|++.... .......+++......+|...-+| |...+++.++.+.|
T Consensus 34 ~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~Gg--I~~~e~~~~~~~~G 95 (234)
T cd04732 34 VAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGG--IRSLEDIERLLDLG 95 (234)
T ss_pred HHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCC--cCCHHHHHHHHHcC
Confidence 33445667876 35566654322 111112222222223578666666 77778887777766
No 483
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=31.25 E-value=1.8e+02 Score=19.99 Aligned_cols=68 Identities=15% Similarity=-0.039 Sum_probs=42.2
Q ss_pred HHhhhcCCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcH-HHHHHHHhhCCCCCccEEEECC
Q 037937 4 VRDLASKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGR-EIEWALRALGCNPSVPAVFIGG 72 (102)
Q Consensus 4 v~~~~~~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~-~~~~~l~~~~g~~tvP~ifi~g 72 (102)
+++.+...+. +|+.-..-.+..+-+++...|.+|-.+|....+-.. ++...+.........|.|-|.+
T Consensus 3 lk~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 3 FRQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 4444444443 233222334457788889999999999999876553 3555555544455677777755
No 484
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.21 E-value=1.9e+02 Score=20.45 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=36.4
Q ss_pred cEEEEEcCCCc----hHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCc
Q 037937 12 AAVIFTKSSCC----MCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSV 65 (102)
Q Consensus 12 ~v~iy~~~~Cp----~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tv 65 (102)
++.+.....-| |=+.-.+..++.|+.++.+.+..+....++.+.+.+.+.-..+
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V 92 (284)
T PRK14177 35 KLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNV 92 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 45555544444 4445567788999999999998776666677777776554444
No 485
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=31.11 E-value=2.1e+02 Score=21.50 Aligned_cols=62 Identities=10% Similarity=-0.047 Sum_probs=40.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccC------CCcHHHHHHHHhhCCCCCccEEEECCE
Q 037937 11 KAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQD------ANGREIEWALRALGCNPSVPAVFIGGR 73 (102)
Q Consensus 11 ~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~------~~~~~~~~~l~~~~g~~tvP~ifi~g~ 73 (102)
..+.+|+-|+|.-..-++.+..+.++++..++.... .....+++.+..... .....||+|.-
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~-~~p~Il~iDEi 156 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKK-NAPCIIFIDEI 156 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHh-cCCCEEEEech
Confidence 359999999999999999999999998776654321 111224444433221 23345788763
No 486
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=31.07 E-value=2e+02 Score=20.55 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=50.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHcCCCcE--EEEeccCCCc-H-HHHHHHHhhCCCCCccEEEECCEEEech----HHHHh
Q 037937 12 AAVIFTKSSCCMCHSIKTLFYELGASPA--IHELDQDANG-R-EIEWALRALGCNPSVPAVFIGGRYVGSA----KDVIS 83 (102)
Q Consensus 12 ~v~iy~~~~Cp~C~~~~~~l~~~~v~~~--~~~vd~~~~~-~-~~~~~l~~~~g~~tvP~ifi~g~~igg~----~~~~~ 83 (102)
.|.+|+ +.|..-..+-......|+... +...|...+. + ++..+....+++..|-.|-|+.+.+-+- +.+.+
T Consensus 78 ~IR~Y~-sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~ 156 (305)
T COG5309 78 SIRTYG-SDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIE 156 (305)
T ss_pred eEEEee-ccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHH
Confidence 577888 777777777777777775532 2333332222 1 2333444567888898999999876443 45555
Q ss_pred HHHcCcHHHHHHhcc
Q 037937 84 LHVDGSLKQMLIDAR 98 (102)
Q Consensus 84 ~~~~g~L~~~l~~~g 98 (102)
+.. ..+..|+++|
T Consensus 157 ~I~--~vrsav~~ag 169 (305)
T COG5309 157 YID--DVRSAVKEAG 169 (305)
T ss_pred HHH--HHHHHHHhcC
Confidence 543 3445555544
No 487
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=31.04 E-value=45 Score=18.00 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=16.4
Q ss_pred cCCCchHHHH--HHHHHHcCCCcE
Q 037937 18 KSSCCMCHSI--KTLFYELGASPA 39 (102)
Q Consensus 18 ~~~Cp~C~~~--~~~l~~~~v~~~ 39 (102)
...||.|... ..++.+.+++..
T Consensus 10 GA~CP~C~~~Dtl~mW~En~ve~v 33 (66)
T COG3529 10 GAVCPACQAQDTLAMWRENNVEIV 33 (66)
T ss_pred cCCCcccchhhHHHHHHhcCCceE
Confidence 3579999865 566788888753
No 488
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=30.74 E-value=1.9e+02 Score=21.04 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=39.3
Q ss_pred cEEEEEc-CCCchHHHHHHHHHHcCCCcEEEEeccCC-CcHH-HHHHHHhhCCCCCccEEEECCEEEechHH
Q 037937 12 AAVIFTK-SSCCMCHSIKTLFYELGASPAIHELDQDA-NGRE-IEWALRALGCNPSVPAVFIGGRYVGSAKD 80 (102)
Q Consensus 12 ~v~iy~~-~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~-~~~~-~~~~l~~~~g~~tvP~ifi~g~~igg~~~ 80 (102)
.+++.+. +....|.++...|++.|++.+++|+-.-. -..+ +.+.+++ ++ .+ .++=++...||+-+
T Consensus 230 dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~-t~--~v-vtvEE~~~~GGlGs 297 (356)
T PLN02683 230 DVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRK-TN--RL-VTVEEGWPQHGVGA 297 (356)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhh-cC--eE-EEEeCCCcCCCHHH
Confidence 4555443 45777888888899999999999987643 2333 3333322 22 23 23334455688854
No 489
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=30.61 E-value=39 Score=16.03 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=8.8
Q ss_pred HHHHHHHHHcCCCc
Q 037937 25 HSIKTLFYELGASP 38 (102)
Q Consensus 25 ~~~~~~l~~~~v~~ 38 (102)
...+++|.+.||+|
T Consensus 7 ~~Lk~iL~~~~I~~ 20 (35)
T PF12949_consen 7 AQLKRILDEHGIEF 20 (35)
T ss_dssp HHHHHHHHHHT---
T ss_pred HHHHHHHHHcCCCC
Confidence 35788899999866
No 490
>PLN02907 glutamate-tRNA ligase
Probab=30.52 E-value=2.9e+02 Score=22.31 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=36.0
Q ss_pred EEEEEcCC-CchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE-CCEEEechHHHHhH
Q 037937 13 AVIFTKSS-CCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI-GGRYVGSAKDVISL 84 (102)
Q Consensus 13 v~iy~~~~-Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi-~g~~igg~~~~~~~ 84 (102)
..+|+.+. ||+ ++..+++..|++|+..+. ....++|.+.. ||..+-+..-+..+
T Consensus 3 ~kLy~~~~S~~~--~v~~~L~~lgv~~e~~~~----------------~p~GkVPvLv~ddG~~L~ES~AIl~Y 58 (722)
T PLN02907 3 AKLSFPPDSPPL--AVIAAAKVAGVPLTIDPS----------------LKSGSAPTLLFSSGEKLTGTNVLLRY 58 (722)
T ss_pred EEEEECCCCChH--HHHHHHHHcCCCcEEeec----------------CCCCCCcEEEECCCCEEECHHHHHHH
Confidence 55777765 444 477789999999988651 12357898886 67666665555443
No 491
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.26 E-value=2e+02 Score=20.30 Aligned_cols=58 Identities=10% Similarity=0.101 Sum_probs=38.2
Q ss_pred cEEEEEcCCCc----hHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE
Q 037937 12 AAVIFTKSSCC----MCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVF 69 (102)
Q Consensus 12 ~v~iy~~~~Cp----~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if 69 (102)
++.+.....-| |=+.-.+..++.|+.++.+.++.+....++.+.+.+.+....+=-|+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIl 95 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIM 95 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEE
Confidence 45444444444 44455677889999999999988777677777777765544443333
No 492
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=29.76 E-value=1.3e+02 Score=17.91 Aligned_cols=61 Identities=25% Similarity=0.259 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEECCE
Q 037937 10 KKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFIGGR 73 (102)
Q Consensus 10 ~~~v~iy~~~~Cp~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi~g~ 73 (102)
..+|++..+..|++..+++. ..+.|...-.+--+..+.... ..+...+...++|.++|..+
T Consensus 43 ~GkIvLv~rg~c~f~~K~~~-A~~aGA~avIi~n~~~~~~~~--~~~~~~~~~~~iP~~~Is~~ 103 (122)
T cd04816 43 KGAIVLVDRGGCPFADKQKV-AAARGAVAVIVVNNSDGGGTA--GTLGAPNIDLKVPVGVITKA 103 (122)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEeCCCCcccc--ccccCCCCCCeeeEEEEcHH
Confidence 45788888999999888775 555576544332122111100 01111112346899988764
No 493
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=29.69 E-value=2.3e+02 Score=20.77 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEEE
Q 037937 22 CMCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVFI 70 (102)
Q Consensus 22 p~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~ifi 70 (102)
.|=+.-.+..++.|+.++.++++.+....++.+.+.+.+.-..+=-|++
T Consensus 102 ~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlV 150 (345)
T PLN02897 102 TYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILV 150 (345)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 3445566677889999999999887766777777777655444433333
No 494
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=29.53 E-value=18 Score=23.01 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=12.5
Q ss_pred EEEcC-CCchHHHHHHHH
Q 037937 15 IFTKS-SCCMCHSIKTLF 31 (102)
Q Consensus 15 iy~~~-~Cp~C~~~~~~l 31 (102)
||+-. .||+|+.....|
T Consensus 5 IFGpei~CPhCRQ~ipAL 22 (163)
T TIGR02652 5 IFGPEIRCPHCRQNIPAL 22 (163)
T ss_pred ccCCcCcCchhhcccchh
Confidence 45543 699999887776
No 495
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.51 E-value=1.1e+02 Score=21.39 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=28.0
Q ss_pred hHHhhhcCCcEEEEEcCCC-chHHHHHHHHHHcCCCcE
Q 037937 3 RVRDLASKKAAVIFTKSSC-CMCHSIKTLFYELGASPA 39 (102)
Q Consensus 3 ~v~~~~~~~~v~iy~~~~C-p~C~~~~~~l~~~~v~~~ 39 (102)
..++++...+|.++.-+.| +.|..+..++++.++++-
T Consensus 61 ~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i 98 (347)
T cd06340 61 EAERLITEEGVVALVGAYQSAVTLAASQVAERYGVPFV 98 (347)
T ss_pred HHHHHhccCCceEEecccchHhHHHHHHHHHHhCCCEE
Confidence 4667788877777776766 457888899999888763
No 496
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=29.39 E-value=49 Score=20.53 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=16.7
Q ss_pred hCCCCCccEEEECCEEEechH
Q 037937 59 LGCNPSVPAVFIGGRYVGSAK 79 (102)
Q Consensus 59 ~~g~~tvP~ifi~g~~igg~~ 79 (102)
..|....-.|+|||+.+|...
T Consensus 91 f~gv~~~a~v~vNG~~vg~~~ 111 (167)
T PF02837_consen 91 FEGVDYAAEVYVNGKLVGSHE 111 (167)
T ss_dssp ESEEESEEEEEETTEEEEEEE
T ss_pred eccceEeeEEEeCCeEEeeeC
Confidence 456677888999999998754
No 497
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.34 E-value=2.1e+02 Score=20.31 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=38.4
Q ss_pred cEEEEEcCCCc----hHHHHHHHHHHcCCCcEEEEeccCCCcHHHHHHHHhhCCCCCccEEE
Q 037937 12 AAVIFTKSSCC----MCHSIKTLFYELGASPAIHELDQDANGREIEWALRALGCNPSVPAVF 69 (102)
Q Consensus 12 ~v~iy~~~~Cp----~C~~~~~~l~~~~v~~~~~~vd~~~~~~~~~~~l~~~~g~~tvP~if 69 (102)
++.+..-..-| |=+.-.+..++.|+.++.+.++.+-...++.+.+.+.+.-..+=-|+
T Consensus 34 ~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIl 95 (296)
T PRK14188 34 GLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGIL 95 (296)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEE
Confidence 44444444433 45566777889999999999988777677777777765544443333
No 498
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=29.32 E-value=1.1e+02 Score=16.98 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=18.2
Q ss_pred CCcEEEEEcCC-CchHHHHHHHHHHcCCC
Q 037937 10 KKAAVIFTKSS-CCMCHSIKTLFYELGAS 37 (102)
Q Consensus 10 ~~~v~iy~~~~-Cp~C~~~~~~l~~~~v~ 37 (102)
..+|++|..++ +.....+...|.+.|.+
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~ 78 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYT 78 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCcc
Confidence 44677887664 44456667777777765
No 499
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=29.28 E-value=2.2e+02 Score=20.58 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=31.0
Q ss_pred CcEEEEEcCC---CchHHHHHHHHHHcCCCcEEEE-eccCCCcHHHHHHHH
Q 037937 11 KAAVIFTKSS---CCMCHSIKTLFYELGASPAIHE-LDQDANGREIEWALR 57 (102)
Q Consensus 11 ~~v~iy~~~~---Cp~C~~~~~~l~~~~v~~~~~~-vd~~~~~~~~~~~l~ 57 (102)
.++.|.+.+. .++..+++..|++.++++..++ +..++....+.+...
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~ 80 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVA 80 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHH
Confidence 4666666553 3466789999999999887764 555666555544443
No 500
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.28 E-value=18 Score=19.55 Aligned_cols=4 Identities=50% Similarity=1.638 Sum_probs=0.0
Q ss_pred CchH
Q 037937 21 CCMC 24 (102)
Q Consensus 21 Cp~C 24 (102)
||||
T Consensus 51 CPYC 54 (62)
T COG4391 51 CPYC 54 (62)
T ss_pred cCcc
Done!